Citrus Sinensis ID: 016470

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIYITKSIARSCKKFSSKTGLLVPQCFASLLKRIFCFSECLNDKSTSSSIP
Secondary Structure (PSIPRED)
cHHHHHHHHHcccHHHHHHHHcccccHHHHHHHcccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccccHHHHHHHccccHHHHHHccccccHHHHHHHcccccccccccccHHHHHHHccHHHHHHHHHHHccHHHHHcccccccHEHHEHccccHHHHHHHHHccHHHHHHHcccccccccHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHEEHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcHHHHHcccccccccc
Coil and Loop (DISEMBL)
MELARFLIrrdtsweitdsiqdqskpkihryganpnassvdqkgigessaidnaetplflatKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKidnggntllhmtgikrsdyvpekmegpalVLQEELLWYERVeevsmphfrnhrnnmgftpeELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAaytvpgganeetgypillrhpffvtFTVSDVLSLTFSLAAVVTFLSIlsspfrlqdfkqslpnkltMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSfipvgifalsyfpiyitKSIARSCKkfssktgllvPQCFASLLKRIFCFseclndkstsssip
Flexible Loop (DISEMBL)
melarflirrdtsweitdsiqdqskpkihryganpnassvdqKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKidnggntllhmtgikrsdyvpEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIYITKSIARSCKKFSSKTGLLVPQCFASLLKRIFCFSeclndkstsssip
Low Complexity Region (SEG)
MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSvvavliatvafaaaytvPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIYITKSIARSCKKFSSKTGLLVPQCFASLLKRIFCFSECLNDKSTSSSIP
Disordered region (IsUnstruct)
*****FLIRR***W****************************************ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIYITKSIARSCKKFSSKTGLLVPQCFASLLKRIFCFSECL**********
Disordered Region (DISOPRED)
MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNA***************NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIYITKSIARSCKKFSSKTGLLVPQCFASLLKRIF****************
Disordered Region (DISEMBL)
MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIYITKSIARSCKKFSSKTGLLVPQCFASLLKRIFCFSECL**********
Disordered Region (DISPRO)
*ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESS**DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIYITKSIARSCKKFSSKTGLLVPQCFASLLKRIFCFSECLN*********
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIYITKSIARSCKKFSSKTGLLVPQCFASLLKRIFCFSECLNDKSTSSSIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	389	2.2.26 [Sep-21-2011]
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.740	0.488	0.276	1e-18
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.642	0.477	0.259	2e-09
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.591	0.432	0.243	4e-09

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 157/343 (45%), Gaps = 55/343 (16%)

Query: 53  NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEV 112
           N +  L LA + G +E++K + +  PQ    ID +G+  LH+A+K +  E+ +L++  + 
Sbjct: 231 NNKNALHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDAD- 289

Query: 113 PMRRLVRKIDNGGNTLLHM-TGIKRSDYVPEKMEGP-------------------ALVLQ 152
           P   +V + D   NT LH+ T  KR++ V   +  P                    L L 
Sbjct: 290 PA--IVMQPDKSCNTALHVATRKKRAEIVELLLSLPDTNANTLTRDHKTALDIAEGLPLS 347

Query: 153 EELLWYE---------RVEEVSMPH--FRNH----RNNMGFTPEELFATANN------EL 191
           EE  + +         R  E++ P    R+     +N++    E+   T  N      EL
Sbjct: 348 EESSYIKECLARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKEL 407

Query: 192 RAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDV 251
           R   +E + +     +VVAVL ATVAFAA +TVPGG N + G  +++    F  F + + 
Sbjct: 408 RKLHREGINNATNSVTVVAVLFATVAFAAIFTVPGGDNND-GSAVVVGRASFKIFFIFNA 466

Query: 252 LSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMI 311
           L+L  SLA VV  ++++    + +     + NKL      ++L+     VAF A+  +++
Sbjct: 467 LALFTSLAVVVVQITLVRGETKAEKRVVEVINKL------MWLASMCTSVAFLASSYIVV 520

Query: 312 KNKEHWAKVLLYTC-SFIPVGIFALSYFPIYITKSI-ARSCKK 352
             K  WA  L+      I  G+  L     Y+ KS   RS +K
Sbjct: 521 GRKNEWAAELVTVVGGVIMAGV--LGTMTYYVVKSKRTRSMRK 561

Arabidopsis thaliana (taxid: 3702)

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 134/308 (43%), Gaps = 58/308 (18%)

Query: 50  AIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
           A  N +T L  A ++G   IVK++       V  +D +G+  LH+A+K +  EI +++++
Sbjct: 155 ARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNTEIVDVLME 214

Query: 110 MEVPMRRLVRKIDNGGNTLLHMTGIK-RSDYVP-------------EKMEGPALVLQEEL 155
            +     L+   DN GNT LH+   K R++ V               K    AL + E+ 
Sbjct: 215 AD---GSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYCEVSRVAVNKSGETALDIAEKT 271

Query: 156 LWYERV---EEVSMPHFRNHRNNMGFTP-------EELFATANNELRAQ----------- 194
             +E V   +++ M + R+ +      P       +E  +   +E+  Q           
Sbjct: 272 GLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVHTQLEQTGRTRREI 331

Query: 195 ----------SKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEE-----TGYPI--- 236
                       E L +     ++VA+LIATVAFAA + VPG   ++      GY +   
Sbjct: 332 QGIAKRVNKMHTEGLNNAINSTTLVAILIATVAFAAIFNVPGQYTDDPKDVPPGYSLGEA 391

Query: 237 -LLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLS 295
                P F+ F V D  +L  SLA VV   S++    R +    ++ NKL M  A + +S
Sbjct: 392 RAAPRPEFLIFVVFDSFALFISLAVVVVQTSVVVIERRAKKQMMAIINKL-MWMACIMIS 450

Query: 296 VCLMMVAF 303
           V  + ++F
Sbjct: 451 VAFVSLSF 458

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/279 (24%), Positives = 110/279 (39%), Gaps = 49/279 (17%)

Query: 53  NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEV 112
           N +T L  A + G + IVK +       V   D +G+  LH+A+K R LE+ E ++Q + 
Sbjct: 161 NGKTSLHTAGRYGLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADY 220

Query: 113 PMRRLVRKIDNGGNTLLHMTGIKRSDYVP--------------EKMEGPALVLQEELLWY 158
               ++ + D  GNT LH+   K    +                  +  A+ L ++L + 
Sbjct: 221 T---ILNERDRKGNTALHIATRKARPQITSLLLTFTAIEVNAINNQKETAMDLADKLQYS 277

Query: 159 ERVEEVSMPHFRNHRNNMGFTPEELFATA-----------------------------NN 189
           E   E++         +  F   E  A A                               
Sbjct: 278 ESALEINEALVEAGAKHGRFIGREDEARALKRAVSDIKHEVQSQLLQNEKTNRRVSGIAK 337

Query: 190 ELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGG---ANEETGYPILLRHPFFVTF 246
           ELR   +E + +T    +VVAVL A++AF A + +PG         G   +     F  F
Sbjct: 338 ELRKLHREAVQNTTNSITVVAVLFASIAFLAIFNLPGQYFTEGSHVGQANIAGRTGFRVF 397

Query: 247 TVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKL 285
            + +  SL  SLA VV  +++++   R Q    S+ NKL
Sbjct: 398 CLLNATSLFISLAVVVVQITLVAWDTRAQKKVVSVVNKL 436

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
224115944	579	predicted protein [Populus trichocarpa]	0.868	0.583	0.671	1e-132
224115932	581	predicted protein [Populus trichocarpa]	0.809	0.542	0.673	1e-123
224115940	581	predicted protein [Populus trichocarpa]	0.809	0.542	0.670	1e-123
224115930	551	predicted protein [Populus trichocarpa]	0.814	0.575	0.618	1e-116
224115926	370	predicted protein [Populus trichocarpa]	0.814	0.856	0.638	1e-115
359496761	490	PREDICTED: ankyrin repeat-containing pro	0.886	0.704	0.524	1e-112
147841570	636	hypothetical protein VITISV_039462 [Viti	0.886	0.542	0.522	1e-112
359496086	1514	PREDICTED: uncharacterized protein LOC10	0.768	0.197	0.611	1e-105
359497521	512	PREDICTED: ankyrin repeat-containing pro	0.928	0.705	0.520	1e-104
359496082	702	PREDICTED: uncharacterized protein LOC10	0.928	0.514	0.512	1e-103

>gi|224115944|ref|XP_002317167.1| predicted protein [Populus trichocarpa] gi|222860232|gb|EEE97779.1| predicted protein [Populus trichocarpa]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 233/347 (67%), Positives = 277/347 (79%), Gaps = 9/347 (2%)

Query: 1   MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDN-----AE 55
           +ELA+FL+R+DTSWE+T S  DQSKPKIH+YG        +++ +  S+ I +      E
Sbjct: 196 VELAKFLVRKDTSWELTYSSIDQSKPKIHKYGER---GGQERQEVHLSNKILDKEESLGE 252

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMR 115
           TPL LATKSGC+EIV+EI  +YPQAVEHIDDEGRN+LHVAIKYRQ +IFELV  M+VPM+
Sbjct: 253 TPLILATKSGCVEIVEEILKLYPQAVEHIDDEGRNVLHVAIKYRQRKIFELVKGMDVPMK 312

Query: 116 RLVRKIDNGGNTLLHMTGIKRSDYVP-EKMEGPALVLQEELLWYERVEEVSMPHFRNHRN 174
           RL RKID  GN++LH  G KR D+V  EKMEGPA +LQEELLW+ERV+EV+  HF NH+N
Sbjct: 313 RLTRKIDGDGNSILHTVGRKRKDFVSDEKMEGPAFLLQEELLWFERVKEVTPSHFLNHQN 372

Query: 175 NMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGY 234
           NM  T E  F TAN+ELR  +KEWL  TAEGCSVVAVLIATVAFAAAYTVPGG N+ TG 
Sbjct: 373 NMKLTAEGYFITANSELRNLAKEWLKTTAEGCSVVAVLIATVAFAAAYTVPGGPNQSTGV 432

Query: 235 PILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFL 294
           P+L+  PFFV FTV+DVLSLTF+L +VVTFLSIL+SPFR +DFK +LPNKL +GF FLFL
Sbjct: 433 PVLVNKPFFVVFTVTDVLSLTFALTSVVTFLSILTSPFRFKDFKHTLPNKLMVGFTFLFL 492

Query: 295 SVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIY 341
           SV +MMVAF ATI+LMI +KE W K+ LY  SFIPVGIFALSYFP+Y
Sbjct: 493 SVAMMMVAFGATIILMIYSKESWTKITLYAVSFIPVGIFALSYFPLY 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115932|ref|XP_002317164.1| predicted protein [Populus trichocarpa] gi|222860229|gb|EEE97776.1| predicted protein [Populus trichocarpa]

 Score =  448 bits (1152), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/325 (67%), Positives = 259/325 (79%), Gaps = 10/325 (3%)

Query: 1   MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAI-----DNAE 55
           +ELA+ L R DTSWE+T S  DQSKPKIHRYG         Q+G+  ++ I     D  E
Sbjct: 246 VELAKLLSRNDTSWEVTYSSIDQSKPKIHRYGEIGG-----QEGMSLAARIPERMDDVGE 300

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMR 115
           TPL LATKSG +EIV+EI  +YPQAVEH+DDEGRN+LHVAIKYR+L+IFELV +MEVPM+
Sbjct: 301 TPLILATKSGIVEIVEEILRLYPQAVEHVDDEGRNVLHVAIKYRELKIFELVTKMEVPMK 360

Query: 116 RLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNN 175
           RLVRKIDN GN++LH  GIKR D+V EKMEGPA +LQEELLW+ERVE+V+ PHF +H N+
Sbjct: 361 RLVRKIDNEGNSILHTVGIKRKDFVSEKMEGPAFLLQEELLWFERVEKVTPPHFISHHNS 420

Query: 176 MGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYP 235
              + E LF TAN+ELR+ +KEW+  TAEG SVVAVLIATVAFAAAYTVPGG N+ TG P
Sbjct: 421 QNLSAECLFITANSELRSSAKEWMKSTAEGSSVVAVLIATVAFAAAYTVPGGPNQSTGVP 480

Query: 236 ILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLS 295
           +L+  PFFV FTVSDVLSLTF+L +VVTFLSILSSPFR +DFK +LPNKL  GF FLFLS
Sbjct: 481 VLVNKPFFVVFTVSDVLSLTFALTSVVTFLSILSSPFRFKDFKHTLPNKLMAGFTFLFLS 540

Query: 296 VCLMMVAFAATILLMIKNKEHWAKV 320
           V +MMVAF +TI L I NKE+WAKV
Sbjct: 541 VAMMMVAFGSTIFLTIYNKENWAKV 565

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115940|ref|XP_002317166.1| predicted protein [Populus trichocarpa] gi|222860231|gb|EEE97778.1| predicted protein [Populus trichocarpa]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/325 (67%), Positives = 259/325 (79%), Gaps = 10/325 (3%)

Query: 1   MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAI-----DNAE 55
           +ELA+ L R DTSWE+T S  DQSKPKIHRYG         Q+G+  ++ I     D  E
Sbjct: 246 VELAKLLSRTDTSWEVTYSSIDQSKPKIHRYGEIGG-----QEGMSLAARIPERMDDVGE 300

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMR 115
           TPL LATKSG +EIV+EI  +YPQAVEH+DDEGRN+LHVAIKYR+L+IFELV +MEVPM+
Sbjct: 301 TPLILATKSGIVEIVEEILRLYPQAVEHVDDEGRNVLHVAIKYRELKIFELVTKMEVPMK 360

Query: 116 RLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNN 175
           RLVRKIDN GN++LH  GIKR D+V EK+EGPA +LQEELLW+ERVE+V+ PHF +H N+
Sbjct: 361 RLVRKIDNEGNSILHTVGIKRKDFVSEKIEGPAFLLQEELLWFERVEKVTPPHFISHHNS 420

Query: 176 MGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYP 235
              + E LF TAN+ELR+ +KEW+  TAEG SVVAVLIATVAFAAAYTVPGG N+ TG P
Sbjct: 421 QNLSAECLFITANSELRSSAKEWMKSTAEGSSVVAVLIATVAFAAAYTVPGGPNQSTGVP 480

Query: 236 ILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLS 295
           +L+  PFFV FTVSDVLSLTF+L +VVTFLSILSSPFR +DFK +LPNKL  GF FLFLS
Sbjct: 481 VLVNKPFFVVFTVSDVLSLTFALTSVVTFLSILSSPFRFKDFKHTLPNKLMAGFTFLFLS 540

Query: 296 VCLMMVAFAATILLMIKNKEHWAKV 320
           V +MMVAF +TI L I NKE+WAKV
Sbjct: 541 VAMMMVAFGSTIFLTIYNKENWAKV 565

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115930|ref|XP_002317163.1| predicted protein [Populus trichocarpa] gi|222860228|gb|EEE97775.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 214/346 (61%), Positives = 250/346 (72%), Gaps = 29/346 (8%)

Query: 1   MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS----SVDQKGIGESSAIDNAET 56
           +ELA+FL+R+DTSWE+T S  DQSKPKIH+YG           +  K + +  ++   ET
Sbjct: 196 VELAKFLVRKDTSWELTYSSIDQSKPKIHKYGERGGQERQEVHLSNKILDKEESL--GET 253

Query: 57  PLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRR 116
           PL LATKSGC+EIV+EI  +YPQAVEHIDDEGRN+LH                      R
Sbjct: 254 PLILATKSGCVEIVEEILKLYPQAVEHIDDEGRNVLH----------------------R 291

Query: 117 LVRKIDNGGNTLLHMTGIKRSDYVP-EKMEGPALVLQEELLWYERVEEVSMPHFRNHRNN 175
           L RKID  GN++LH  G KR D+V  EKMEGPA +LQEELLW+ERVE+V+  HF+ HRNN
Sbjct: 292 LTRKIDGDGNSILHTVGRKRKDFVSDEKMEGPAFLLQEELLWFERVEKVTPSHFQGHRNN 351

Query: 176 MGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYP 235
              T E  F TAN+ELR  +KEWL  TAEGCSVVAVLIATVAFAAAYTVPGG N+ TG P
Sbjct: 352 KMLTAEGFFFTANSELRNLAKEWLKTTAEGCSVVAVLIATVAFAAAYTVPGGPNQSTGVP 411

Query: 236 ILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLS 295
           +L+  PFFV FTV+DVLSLTF+L AVVTFLSILSSPFR +DFK  LPNKL +GF FLF S
Sbjct: 412 VLVNKPFFVVFTVADVLSLTFALTAVVTFLSILSSPFRFKDFKHILPNKLMIGFTFLFFS 471

Query: 296 VCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIY 341
           V +MMVAF ATILLMI +KE W K+ LY  SFIPV I AL YFP+Y
Sbjct: 472 VAMMMVAFGATILLMIYSKESWEKITLYAVSFIPVSISALVYFPLY 517

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115926|ref|XP_002317161.1| predicted protein [Populus trichocarpa] gi|222860226|gb|EEE97773.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 214/335 (63%), Positives = 243/335 (72%), Gaps = 18/335 (5%)

Query: 25  KPKIHRYG--ANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVE 82
           KPKIH+YG         V             AETPL LATKSGC+EIV+EI   YPQAVE
Sbjct: 2   KPKIHKYGEKGGQERQEVHLYNTIPDQMESRAETPLILATKSGCVEIVEEILKAYPQAVE 61

Query: 83  HIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP- 141
           HIDD+GRN+LHVAIKYRQL+IF+LV +MEVPM+RL RKID  GN++LH  G K  D V  
Sbjct: 62  HIDDDGRNVLHVAIKYRQLKIFKLVTRMEVPMKRLGRKIDKDGNSILHNVGKKSKDVVSD 121

Query: 142 EKMEGPALVLQEELLWYE---------------RVEEVSMPHFRNHRNNMGFTPEELFAT 186
           EKMEGPA +LQEELLW+E               RVE+V+  HF+ HRNN   T E  F T
Sbjct: 122 EKMEGPAFLLQEELLWFEFFERYVLFVIHVRTQRVEKVTPSHFQGHRNNKMLTAEGFFFT 181

Query: 187 ANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTF 246
           AN+ELR  +KEWL  TAEGCSVVAVLIATVAFAAAYTVPGG N+ TG P+L+  PFFV F
Sbjct: 182 ANSELRNLAKEWLKTTAEGCSVVAVLIATVAFAAAYTVPGGPNQSTGVPVLVNKPFFVVF 241

Query: 247 TVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAAT 306
           TV+DVLSLTF+L AVVTFLSILSSPFR +DFK  LPNKL +GF FLF SV +MMVAF AT
Sbjct: 242 TVADVLSLTFALTAVVTFLSILSSPFRFKDFKHILPNKLMIGFTFLFFSVAMMMVAFGAT 301

Query: 307 ILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIY 341
           ILLMI +KE W K+ LY  SFIPV I AL YFP+Y
Sbjct: 302 ILLMIYSKESWEKITLYAVSFIPVSISALVYFPLY 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496761|ref|XP_003635326.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/391 (52%), Positives = 270/391 (69%), Gaps = 46/391 (11%)

Query: 2   ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGE-------------- 47
           +LA  LI  DTSW++T+  +D+SKP+ HRYG     +S+++KG+G               
Sbjct: 54  KLAELLIPNDTSWKLTNPREDRSKPRTHRYGP---GTSLNEKGLGRDGLQSLSVGNEEKE 110

Query: 48  ---------------------------SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA 80
                                      +  I   ETPLFLAT SG  EIV++I +V+PQA
Sbjct: 111 TPQGQSQESKKSSFTEREGGGEEEDYTTPIIKTGETPLFLATMSGIREIVEQILDVHPQA 170

Query: 81  VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYV 140
           +EHI++ G+NILHVA+KYRQ+EIF LV+  E+  RRLVRK D  GN++LHM G KRS Y+
Sbjct: 171 IEHINNRGKNILHVAVKYRQIEIFNLVVNNEMLARRLVRKTDEWGNSILHMVGKKRSGYI 230

Query: 141 PEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLI 200
            EK++ PAL LQ+ELL +ERV+EVS  +F  H N    TPEELFA   ++L   + +WL 
Sbjct: 231 AEKIQSPALQLQKELLLFERVKEVSKTYFIKHLNENKQTPEELFAKTYSDLHNSATDWLK 290

Query: 201 HTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAA 260
            T+E C++VAVLIATVAFAAAYT+PGG N+ TG P+LL  PFFV FT++DV+SLTF+L +
Sbjct: 291 RTSENCTIVAVLIATVAFAAAYTIPGGPNQSTGLPLLLSQPFFVIFTLTDVISLTFALTS 350

Query: 261 VVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKV 320
           VVTFLSIL+S FRLQDFK SLP KL +GF FL LSV +MMVAFAATI+LMI+NKE W K+
Sbjct: 351 VVTFLSILTSSFRLQDFKNSLPQKLMLGFTFLILSVSMMMVAFAATIVLMIRNKERWTKI 410

Query: 321 LLYTCSFIPVGIFALSYFPIYITKSIARSCK 351
           +LY+ +F+PV +FA+SY P+Y+  S+  +CK
Sbjct: 411 VLYSVAFLPVTLFAISYSPLYL--SLLEACK 439

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841570|emb|CAN77609.1| hypothetical protein VITISV_039462 [Vitis vinifera]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 205/392 (52%), Positives = 270/392 (68%), Gaps = 47/392 (11%)

Query: 2   ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGE-------------- 47
           +LA  LI  DTSW++T+  +D+SKP+ HRYG     +S+++KG+G               
Sbjct: 199 KLAELLIPNDTSWKLTNPREDRSKPRTHRYGPR---TSLNEKGLGRDGLQSLSVGNEEKE 255

Query: 48  ----------------------------SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQ 79
                                       +  I   ETPLFLAT SG  EIV++I +V+PQ
Sbjct: 256 TPQGQSQESKKSSFTEREGGGGEEEDYTTPIIKTGETPLFLATMSGIREIVEQILDVHPQ 315

Query: 80  AVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDY 139
           A+EHI++ G+NILHVA+KYRQ+EIF LV+  E+  RRLVRK D  GN++LHM G KRS Y
Sbjct: 316 AIEHINNRGKNILHVAVKYRQIEIFNLVVNNEMLARRLVRKTDEWGNSILHMVGKKRSGY 375

Query: 140 VPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWL 199
           + EK++ PAL LQ+ELL +ERV+EVS  +F  H N    TPEELFA   ++L   + +WL
Sbjct: 376 IAEKIQSPALQLQKELLLFERVKEVSKTYFIKHLNENKQTPEELFAKTYSDLHNSATDWL 435

Query: 200 IHTAEGCSVVAVLIATVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLA 259
             T+E C++VAVLIATVAFAAAYT+PGG N+ TG P+LL  PFFV FT++DV+SLTF+L 
Sbjct: 436 KRTSENCTIVAVLIATVAFAAAYTIPGGPNQSTGLPLLLSQPFFVIFTLTDVISLTFALT 495

Query: 260 AVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAK 319
           +VVTFLSIL+S FRLQDFK SLP KL +GF FL LSV +MMVAFAATI+LMI+NKE W K
Sbjct: 496 SVVTFLSILTSSFRLQDFKNSLPQKLMLGFTFLILSVSMMMVAFAATIVLMIRNKERWTK 555

Query: 320 VLLYTCSFIPVGIFALSYFPIYITKSIARSCK 351
           ++LY+ +F+PV +FA+SY P+Y+  S+  +CK
Sbjct: 556 IVLYSVAFLPVTLFAISYSPLYL--SLLEACK 585

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496086|ref|XP_003635148.1| PREDICTED: uncharacterized protein LOC100853163 [Vitis vinifera]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 184/301 (61%), Positives = 236/301 (78%), Gaps = 2/301 (0%)

Query: 51  IDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQM 110
           I   ETPLFLAT SG  EIV++I +V+PQA+EHI++ G+NILHVA+KYRQ+EIF LV+  
Sbjct: 517 IKTGETPLFLATMSGIREIVEQILDVHPQAIEHINNRGKNILHVAVKYRQIEIFNLVVNN 576

Query: 111 EVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFR 170
           E+  RRLVRK D  GN++LHM G KRS Y+ EK++ PAL LQ+ELL +ERV+EVS  +F 
Sbjct: 577 EMLARRLVRKTDEWGNSILHMVGKKRSGYIAEKIQSPALQLQKELLLFERVKEVSKTYFI 636

Query: 171 NHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANE 230
            H N    TPEELFA   ++L   + +WL  T+E C++VAVLIATVAFAAAYT+PGG N+
Sbjct: 637 KHLNENKQTPEELFAKTYSDLHNSATDWLKRTSENCTIVAVLIATVAFAAAYTIPGGPNQ 696

Query: 231 ETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFA 290
            TG P+LL  PFFV FT++DV+SLTF+L +VVTFLSIL+S FRLQDFK SLP KL +GF 
Sbjct: 697 STGLPLLLSQPFFVIFTLTDVISLTFALTSVVTFLSILTSSFRLQDFKNSLPQKLMLGFT 756

Query: 291 FLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIYITKSIARSC 350
           FL LSV +MMVAFAATI+LMI+NKE W K++LY+ +F+PV +FA+SY P+Y+  S+  +C
Sbjct: 757 FLILSVSMMMVAFAATIVLMIRNKERWTKIVLYSVAFLPVTLFAISYSPLYL--SLLEAC 814

Query: 351 K 351
           K
Sbjct: 815 K 815

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497521|ref|XP_003635551.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 258/386 (66%), Gaps = 25/386 (6%)

Query: 2   ELARFLIRRDTSWEITD-SIQDQSKPKIHRYGANPNASSVDQKGIGESSA---------- 50
           ELA  L+  DTSWE T+    D+    +   G + + SS ++  +  S A          
Sbjct: 86  ELASKLLESDTSWEATNPQAVDRGSISVQEKGGDSSVSSKEKAKVDPSIALQHPDEKKGK 145

Query: 51  ------------IDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY 98
                       I N ETPLFLAT SG  EIV EI   YPQA+EH +D+GRNILHVAI Y
Sbjct: 146 TSPEVNRTRFNNIRNKETPLFLATMSGIPEIVDEILKKYPQAIEHYNDQGRNILHVAINY 205

Query: 99  RQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY 158
           RQ+EIF+ V++ME+P RRL+R  D  GN++LHM G K   YV  K   PA+ LQEELL +
Sbjct: 206 RQIEIFDRVVKMEMPARRLLRATDAKGNSILHMVGKKGKRYVSRKSRSPAIQLQEELLLF 265

Query: 159 ERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIATVAF 218
           ERV+E S  HF    N+   T +ELFA+   EL  ++KEWL  TAE C++VAVLIATVAF
Sbjct: 266 ERVKEYSKSHFLKVFNHNNQTADELFASNYCELHEEAKEWLKRTAENCTIVAVLIATVAF 325

Query: 219 AAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFK 278
           AAAYT+PGG N+ TG P+LL  PFFV FT++DV+SLT++L +V+TFLSIL+SPF+LQDFK
Sbjct: 326 AAAYTIPGGPNQSTGIPLLLSQPFFVVFTLADVISLTYALTSVITFLSILTSPFQLQDFK 385

Query: 279 QSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYF 338
           +SL  KL +GF FL LSV +MMVAFAATI+LMI NKE W K++LY+ +F+PV IFALSY 
Sbjct: 386 KSLLRKLMLGFTFLILSVSMMMVAFAATIILMIHNKERWTKIVLYSVAFLPVIIFALSYS 445

Query: 339 PIYITKSIARSCKKFSSKTGLLVPQC 364
           P+Y    + ++C    +    L P+C
Sbjct: 446 PLYY--RLLKACTGLLNLALELCPRC 469

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496082|ref|XP_002266101.2| PREDICTED: uncharacterized protein LOC100245282 [Vitis vinifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/390 (51%), Positives = 258/390 (66%), Gaps = 29/390 (7%)

Query: 2   ELARFLIRRDTSWEITD-------------SIQDQS-------------KPKIHRYGANP 35
           ELA  L+  DTSWE T+             S+Q++              KP I     + 
Sbjct: 272 ELASKLLESDTSWEATNPQAVDRGVPTKPISVQEKGGGSLVSSKKREKVKPSIVLQHPDD 331

Query: 36  NASSVDQKGIGES-SAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHV 94
                  KG     + I N ETPLFLAT SG  EIV EI   YPQA+EH +D+GRNILHV
Sbjct: 332 KKGKTSPKGNRTRFNNIRNKETPLFLATMSGIPEIVSEILKKYPQAIEHYNDQGRNILHV 391

Query: 95  AIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEE 154
           AI YRQ+EIF++V++ME+P RRL+R  D  GN++LHM G K   YV  K   PA+ LQEE
Sbjct: 392 AINYRQIEIFDMVVEMEMPARRLLRATDTKGNSILHMIGKKGKRYVSRKTRSPAIQLQEE 451

Query: 155 LLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSVVAVLIA 214
           LL +ERV+E S  HF    N+   T +ELFA+   EL  ++KEWL  TAE C++VAVLIA
Sbjct: 452 LLLFERVKEYSKSHFLKVFNHNNQTADELFASNYCELHEEAKEWLKRTAENCTIVAVLIA 511

Query: 215 TVAFAAAYTVPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRL 274
           TVAFAAAYT+PGG N+ TG P+LL  PFFV FT++DV+SLT++L +V+TFLSIL+SPF+L
Sbjct: 512 TVAFAAAYTIPGGPNQSTGIPLLLSQPFFVVFTLADVISLTYALTSVITFLSILTSPFQL 571

Query: 275 QDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFA 334
           QDFK+SL  KL +GF FL LSV +MMVAF AT++LMI+NKE W K++LY+ +F+PV IFA
Sbjct: 572 QDFKKSLLRKLMLGFTFLILSVSMMMVAFGATVILMIQNKERWTKIVLYSVAFLPVIIFA 631

Query: 335 LSYFPIYITKSIARSCKKFSSKTGLLVPQC 364
           LSY P+Y    + ++C    +    L P+C
Sbjct: 632 LSYSPLYY--RLLKACTGLLNLALELCPRC 659

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	389
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.722	0.466	0.294	5e-31
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.748	0.434	0.280	9.1e-30
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.796	0.893	0.256	2.1e-29
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.740	0.460	0.265	1.2e-28
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.727	0.493	0.273	1.4e-27
TAIR|locus:2075009	607	AT3G09550 [Arabidopsis thalian	0.236	0.151	0.312	7.3e-09
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.205	0.118	0.329	6.2e-08
TAIR|locus:2092522	590	ITN1 "INCREASED TOLERANCE TO N	0.719	0.474	0.251	2.4e-07
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.226	0.162	0.304	8.8e-07
TAIR|locus:2181768	524	ANK1 "ankyrin-like1" [Arabidop	0.244	0.181	0.31	9.9e-07

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 5.0e-31, P = 5.0e-31
 Identities = 84/285 (29%), Positives = 142/285 (49%)

Query:    58 LFLATKSGCIEIVKEIFNVYPQAVEHIDD-EGRNILHVAIKYRQLEIFELVIQMEVPMRR 116
             L  A KSG  +   EI     Q +  ++   GRN+  +A+++++ +IF L+  ++     
Sbjct:   298 LLEAAKSGNRDFFIEIIKCNSQLLWILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVT 357

Query:   117 LVRKIDNGGNTLLHMTG-IKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNN 175
             L+R  D G N +LH+ G +   D +  K+ G AL +Q E  W++ VE +        +N 
Sbjct:   358 LLRSYDKGNNNILHIAGRLSTPDQL-SKISGAALKMQRESQWFKEVESLVSEREVVQKNK 416

Query:   176 MGFTPEELFATANNELRAQSKEWLIHTAEGCSXXXXXXXXXXXXXXXXXPGGANEETGYP 235
                TP ++F   +  LR + +EW+ +TA  CS                 PGG +  +G P
Sbjct:   417 DNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDGTSGSP 476

Query:   236 ILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLS 295
             ++L    F  F  +D L+   S  +V+ FLSIL+S +   DF  SLP K+ +G + LF+S
Sbjct:   477 LILNDLHFRAFIFTDTLAFFASCISVLIFLSILTSRYSFDDFIVSLPRKMILGQSILFIS 536

Query:   296 VCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPI 340
             +  M+VAF  ++   +++K      L    SF P  +F +  +P+
Sbjct:   537 IASMLVAFITSLSASMRHKPALVYPLKPLASF-PSLLFLMLQYPL 580

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 337 (123.7 bits), Expect = 9.1e-30, P = 9.1e-30
 Identities = 85/303 (28%), Positives = 147/303 (48%)

Query:    44 GIGE-SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHV-AIKYRQL 101
             G+ E S  +D A   L  A + G ++ + E+     + +        + L + A+++RQ 
Sbjct:   351 GLKERSETVDEA---LLFAVRYGNVDFLVEMIRNNSELLWSTRTSSSSTLFLLAVEFRQE 407

Query:   102 EIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERV 161
             ++F L+  ++     L+   D  GN +LH+ G          + G  L LQ EL W++ V
Sbjct:   408 KVFSLLYGLDDRKYLLLADKDCDGNGVLHLAGFPSPPSKLSSVVGAPLQLQRELQWFKEV 467

Query:   162 EEVSMPHFRNHR-NNMGFTPEELFATANNELRAQSKEWLIHTAEGCSXXXXXXXXXXXXX 220
             E ++ P     R N    TP E+F   +  LR ++++W+  TA  CS             
Sbjct:   468 ERIA-PEIEKERVNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAA 526

Query:   221 XXXXPGGANEET-GYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQ 279
                 PGG ++ + G P  LR   F+ F VSD++S   S  +V+ FL IL++ +   DF  
Sbjct:   527 VFTVPGGTDDNSKGKPFHLRDRRFIIFIVSDLISCFASCTSVLIFLGILTARYSFDDFLV 586

Query:   280 SLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHW--AKVLLYTCSFIPVGIFALSY 337
              LP K+  G + LF+S+  M++AF++ +  M+  +  W  A  +L+ C  +P  +F L  
Sbjct:   587 FLPTKMIAGLSILFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILFAC--LPALLFVLLQ 644

Query:   338 FPI 340
             +P+
Sbjct:   645 YPL 647

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 83/323 (25%), Positives = 157/323 (48%)

Query:    48 SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
             S  + ++   LF A +SG +E++  +   YP  +  +D + +++ H+A   R  +IF  +
Sbjct:    25 SQFVGSSPMLLFDAAQSGNLELLLILIRSYPDLIWTVDHKNQSLFHIAAINRHEKIFNRI 84

Query:   108 IQMEVPMRRLVR--KIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVS 165
              ++   ++ L+   K     + LLH+          + + G AL +Q E+LWY+ V+E+ 
Sbjct:    85 YELGA-IKDLIAMYKEKESNDNLLHLVARLPPPNRLQVVSGAALQMQREILWYKAVKEIV 143

Query:   166 MPHFRNHRNNMGFTPEELFATANNELRAQSKEWLIHTAEGCSXXXXXXXXXXXXXXXXXP 225
                +   +N       +LF   ++ LR + ++W+  TA  C                  P
Sbjct:   144 PRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLP 203

Query:   226 GGAN-----EETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQS 280
             GG +     +  G+P   +  +F  F +SD ++L  S+ +++ FLSIL+S +    F+ +
Sbjct:   204 GGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSSVTSIMIFLSILTSRYAEASFQTT 263

Query:   281 LPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLL-YTCSFIPVGIFALSYFP 339
             LP KL +G   LF+S+  M++AF AT++L+   +  W+ +LL Y  S   +  F + +F 
Sbjct:   264 LPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKWSLILLVYVASATALS-FVVLHFQ 322

Query:   340 IYITKSIARSCKKF---SSKTGL 359
             ++     +    KF     K+GL
Sbjct:   323 LWFDTLRSAYLSKFLFHGRKSGL 345

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 80/301 (26%), Positives = 145/301 (48%)

Query:    44 GIGE-SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNIL-HVAIKYRQL 101
             G+ E S ++D A   L  A + G ++ + E+        E +   G + L + A++ RQ 
Sbjct:   312 GLKERSESVDEA---LLFAVRYGNVDFLVEMIK---NNSELLWSTGTSTLFNTAVQVRQE 365

Query:   102 EIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERV 161
             ++F L+  +       +   D+ GN++LH+ G    +Y    +    L +Q EL W++ +
Sbjct:   366 KVFSLLYGLGDRKYLFLADKDSDGNSVLHLAGYPPPNYKLATVVSATLQMQRELQWFKEM 425

Query:   162 EEVSMPHFRNHR-NNMGFTPEELFATANNELRAQSKEWLIHTAEGCSXXXXXXXXXXXXX 220
             E + +P   N R N    TP E+F   +  +R ++++W+  TA  CS             
Sbjct:   426 ERI-VPAIENERVNTENLTPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAA 484

Query:   221 XXXXPGGANEETGYPILLRHP-FFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQ 279
                 PGG ++ +G     RH   FV F VSD++S   +  +V+ FL IL++ +   DF  
Sbjct:   485 IFTVPGGTDDNSGGRPFHRHERIFVIFIVSDLISCFAACTSVLIFLGILTARYAFDDFLF 544

Query:   280 SLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFP 339
             SLP  +  G + LF+S+  M+VAF++ +  +  +    A  + + C   P  +F +  +P
Sbjct:   545 SLPANMIAGLSTLFVSIAAMLVAFSSALFTIFNDPWIVAPTIFFAC--FPALLFVMIQYP 602

Query:   340 I 340
             +
Sbjct:   603 L 603

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 1.4e-27, P = 1.4e-27
 Identities = 80/292 (27%), Positives = 141/292 (48%)

Query:    58 LFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRL 117
             LF A + G +EI+  +   +   +  +D+  R + HVA  YR   IF L+ ++   ++ L
Sbjct:   259 LFDAAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYELG-GIKDL 317

Query:   118 VR--KIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNN 175
             +   K     +TLLH+          +   G AL +Q+ELLW++ V+E+    +   +N 
Sbjct:   318 IASYKEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNT 377

Query:   176 MGFTPEELFATANNELRAQSKEWLIHTAEGCSXXXXXXXXXXXXXXXXXPGGANEE---- 231
              G    ++F   +  LR + + W+  TA  C                  PGG ++     
Sbjct:   378 KGELAHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKA 437

Query:   232 --TGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGF 289
                G+P   +   F  FT+SD ++L  S+ ++V FLSI +S +  +DF+  LP KL  G 
Sbjct:   438 NTLGFPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGL 497

Query:   290 AFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCSFIPVGIFALSYFPIY 341
             + LF+S+  M++AF  +++L+   K   + VL+   + +    FA  YF ++
Sbjct:   498 SALFISIISMILAFTFSMILIRVEKASLSLVLISCLASLTALTFAYLYFHLW 549

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2075009 AT3G09550 [Arabidopsis thaliana (taxid:3702)]

 Score = 120 (47.3 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
 Identities = 30/96 (31%), Positives = 54/96 (56%)

Query:    53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEV 112
             N +  L LA + G ++IV+ + +  PQ     D +G+  LH+A+K    ++  L+++ + 
Sbjct:   245 NGKNALHLAARQGHVDIVRTLLDKDPQLARRTDKKGQTSLHMAVKGVSSQVVRLLLRAD- 303

Query:   113 PMRRLVRKIDNGGNTLLHM-TGIKRSDYVPEKMEGP 147
             P   +V   D  GNT+LH+ T  KR++ V E ++ P
Sbjct:   304 PA--IVMLPDKFGNTVLHIATRKKRAEIVNELLQLP 337

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 6.2e-08, Sum P(2) = 6.2e-08
 Identities = 27/82 (32%), Positives = 49/82 (59%)

Query:    52 DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQM- 110
             D+   P+ +A K G ++I+K I    P A+E +D E +N+LHVA K  ++E+ + +++  
Sbjct:   348 DDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCC 407

Query:   111 -EVPMRRLVRKIDNGGNTLLHM 131
              +    +L+ + D  GNT LH+
Sbjct:   408 KDKNKEKLINEEDANGNTPLHL 429

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092522 ITN1 "INCREASED TOLERANCE TO NACL" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 81/322 (25%), Positives = 132/322 (40%)

Query:    51 IDN-AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
             ID   +T L +A K    E+VK + +  P  V   D      LHVA + ++ EI EL++ 
Sbjct:   262 IDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKRAEIVELLLS 321

Query:   110 MEVPMRRLVRKIDNGGNTLL--HMTGIKRSDYVPEKMEGPALVLQEELLWYE---RVEEV 164
             +  P        D   NTL   H T +  ++ +P   E   +   +E L      R  E+
Sbjct:   322 L--P--------DTNANTLTRDHKTALDIAEGLPLSEESSYI---KECLARSGALRANEL 368

Query:   165 SMPH--FRNH----RNNMGFTPEELFATANN------ELRAQSKEWLIHTAEGCSXXXXX 212
             + P    R+     +N++    E+   T  N      ELR   +E + +     +     
Sbjct:   369 NQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREGINNATNSVTVVAVL 428

Query:   213 XXXXXXXXXXXXPGGANEETGYPILLRHPFFVTFTVSDVLSLTFSLAAVVTFLSILSSPF 272
                         PGG N + G  +++    F  F + + L+L  SLA VV  ++++    
Sbjct:   429 FATVAFAAIFTVPGGDNND-GSAVVVGRASFKIFFIFNALALFTSLAVVVVQITLVRGET 487

Query:   273 RLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLMIKNKEHWAKVLLYTCS-FIPVG 331
             + +     + NKL M  A    S+C   VAF A+  +++  K  WA  L+      I  G
Sbjct:   488 KAEKRVVEVINKL-MWLA----SMCTS-VAFLASSYIVVGRKNEWAAELVTVVGGVIMAG 541

Query:   332 IFALSYFPIYITKSI-ARSCKK 352
             +  L     Y+ KS   RS +K
Sbjct:   542 V--LGTMTYYVVKSKRTRSMRK 561

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IPI

GO:0034613 "cellular protein localization" evidence=IDA

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
 Identities = 28/92 (30%), Positives = 49/92 (53%)

Query:    50 AIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
             A  N +T L  A+++G ++++K +    P     +D +G+  LH+A+K   +E+ E +I+
Sbjct:   165 AKSNGKTALHSASRNGHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELIK 224

Query:   110 MEVPMRRLVRKIDNGGNTLLHMTGIK-RSDYV 140
              +   R  +   D  GNT LH+   K RS  V
Sbjct:   225 AD---RSSINIADTKGNTALHIAARKGRSQIV 253

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2181768 ANK1 "ankyrin-like1" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 9.9e-07, Sum P(2) = 9.9e-07
 Identities = 31/100 (31%), Positives = 55/100 (55%)

Query:    43 KGIGESS-AIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL 101
             KG+  ++ A  N +T L  A ++G   IVK++       V  +D +G+  LH+A+K +  
Sbjct:   147 KGVDLAAIARSNGKTALHSAARNGHTVIVKKLIEKKAGMVTRVDKKGQTALHMAVKGQNT 206

Query:   102 EIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIK-RSDYV 140
             EI +++++ +     L+   DN GNT LH+   K R++ V
Sbjct:   207 EIVDVLMEAD---GSLINSADNKGNTPLHIAVRKNRAEIV 243

GO:0005886 "plasma membrane" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	389
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-25
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-09
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-08
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-06
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-05
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.002
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.002

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 98.3 bits (246), Expect = 3e-25
 Identities = 48/118 (40%), Positives = 60/118 (50%), Gaps = 13/118 (11%)

Query: 196 KEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEET-----GYPILLRHP-FFVTFTVS 249
            EWL  T     VVA LIATV FAA +T PGG  ++      G PIL   P  F  F VS
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

Query: 250 DVLSLTFSLAAVVTFLSILSSPFRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATI 307
           + ++   SL AV+  L I+ S  R       LP +L      L+LS+  +MVAFAA  
Sbjct: 61  NTIAFVASLVAVILLLYIVPSFSR------RLP-RLLALLTLLWLSLLSLMVAFAAGS 111

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.9 bits (130), Expect = 5e-09
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 17/102 (16%)

Query: 30  RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
             GA+ NA   D  G           TPL LA K+G +EIVK +       V   D +G 
Sbjct: 28  ENGADVNA--KDNDG----------RTPLHLAAKNGHLEIVKLLLE-KGADVNARDKDGN 74

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
             LH+A +   L++ +L+++        V   D  G T LH+
Sbjct: 75  TPLHLAARNGNLDVVKLLLK----HGADVNARDKDGRTPLHL 112

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 55  ETPLFLATKSGCIEIVKE-IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVP 113
            TPL LA  +G +E+VK  + N     V   D++GR  LH+A K   LEI +L+++    
Sbjct: 8   RTPLHLAASNGHLEVVKLLLENGAD--VNAKDNDGRTPLHLAAKNGHLEIVKLLLE---- 61

Query: 114 MRRLVRKIDNGGNTLLHM 131
               V   D  GNT LH+
Sbjct: 62  KGADVNARDKDGNTPLHL 79

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 47.6 bits (114), Expect = 3e-07
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
           T L LA ++G +EIVK +   +   V   D +G   LH+A +   LEI +L+++
Sbjct: 30  TALHLAARNGNLEIVKLLLE-HGADVNAKDKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 45.5 bits (108), Expect = 4e-06
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 13/79 (16%)

Query: 30  RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
             GA+ NA   D+ G           TPL LA ++G +++VK +   +   V   D +GR
Sbjct: 61  EKGADVNA--RDKDG----------NTPLHLAARNGNLDVVKLLLK-HGADVNARDKDGR 107

Query: 90  NILHVAIKYRQLEIFELVI 108
             LH+A K   LE+ +L++
Sbjct: 108 TPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 13/77 (16%)

Query: 58  LFLATKSGCIEIVKEIFNVYPQAVEHID-DEGRN--ILHVAIKYRQLEIFELVIQMEVPM 114
           L LA K+G +E+VK +        +  D + G     LH+A +   LEI +L+++     
Sbjct: 1   LHLAAKNGNLELVKLLLE------KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGAD- 53

Query: 115 RRLVRKIDNGGNTLLHM 131
              V   D  GNT LH+
Sbjct: 54  ---VNAKDKDGNTALHL 67

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 83  HIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
             D++GR  LH+A     LE+ +L+++        V   DN G T LH+
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGAD----VNAKDNDGRTPLHL 46

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 78  PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           P  +   D  G   LH+A KY  LE+ + +++  V +       D+ G T L +
Sbjct: 6   PIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLR----DSDGLTALDL 55

Length = 56

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	389
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
PF13962	113	PGG: Domain of unknown function	99.93
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.88
PHA02878	477	ankyrin repeat protein; Provisional	99.88
PHA02946	446	ankyin-like protein; Provisional	99.88
PHA02874	434	ankyrin repeat protein; Provisional	99.87
PHA02791	284	ankyrin-like protein; Provisional	99.87
PHA02875	413	ankyrin repeat protein; Provisional	99.87
PHA02791	284	ankyrin-like protein; Provisional	99.87
PHA02859	209	ankyrin repeat protein; Provisional	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA02874	434	ankyrin repeat protein; Provisional	99.87
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.86
PHA03100	480	ankyrin repeat protein; Provisional	99.86
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.86
PHA03100	480	ankyrin repeat protein; Provisional	99.85
PHA02798	489	ankyrin-like protein; Provisional	99.85
PHA02859	209	ankyrin repeat protein; Provisional	99.85
PHA03095	471	ankyrin-like protein; Provisional	99.84
PHA02989	494	ankyrin repeat protein; Provisional	99.84
PHA02875	413	ankyrin repeat protein; Provisional	99.84
PHA02946	446	ankyin-like protein; Provisional	99.84
PHA02798	489	ankyrin-like protein; Provisional	99.83
PHA02989	494	ankyrin repeat protein; Provisional	99.83
PHA03095	471	ankyrin-like protein; Provisional	99.83
KOG0508	615	consensus Ankyrin repeat protein [General function	99.82
PHA02876	682	ankyrin repeat protein; Provisional	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.82
KOG0510	929	consensus Ankyrin repeat protein [General function	99.81
PHA02795	437	ankyrin-like protein; Provisional	99.81
PHA02876	682	ankyrin repeat protein; Provisional	99.8
KOG0508	615	consensus Ankyrin repeat protein [General function	99.8
PHA02795	437	ankyrin-like protein; Provisional	99.8
KOG0510	929	consensus Ankyrin repeat protein [General function	99.78
PHA02743	166	Viral ankyrin protein; Provisional	99.78
PHA02743	166	Viral ankyrin protein; Provisional	99.77
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.77
PHA02917	661	ankyrin-like protein; Provisional	99.77
PHA02741	169	hypothetical protein; Provisional	99.76
PHA02884	300	ankyrin repeat protein; Provisional	99.76
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.76
PHA02917	661	ankyrin-like protein; Provisional	99.75
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.73
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.73
PHA02730	672	ankyrin-like protein; Provisional	99.73
PHA02741	169	hypothetical protein; Provisional	99.72
PHA02736	154	Viral ankyrin protein; Provisional	99.72
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.71
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.69
PHA02730	672	ankyrin-like protein; Provisional	99.68
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.68
PHA02884	300	ankyrin repeat protein; Provisional	99.68
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.67
KOG0514	452	consensus Ankyrin repeat protein [General function	99.67
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.67
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.65
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.63
PHA02792	631	ankyrin-like protein; Provisional	99.63
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.63
KOG0514	452	consensus Ankyrin repeat protein [General function	99.61
PHA02736	154	Viral ankyrin protein; Provisional	99.59
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.56
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.55
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.55
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.54
PHA02792	631	ankyrin-like protein; Provisional	99.52
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.45
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.45
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.45
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.41
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.4
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.4
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.39
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.38
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.37
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.37
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.25
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.23
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.2
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.13
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.12
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.06
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.04
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.92
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.86
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.84
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.84
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.81
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.67
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.61
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.55
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.53
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.52
PF13606	30	Ank_3: Ankyrin repeat	98.51
KOG0522	560	consensus Ankyrin repeat protein [General function	98.48
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.48
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.48
PF13606	30	Ank_3: Ankyrin repeat	98.45
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.35
KOG0522	560	consensus Ankyrin repeat protein [General function	98.23
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.12
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.11
KOG2384	223	consensus Major histocompatibility complex protein	98.0
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.81
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.76
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.75
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.69
KOG0511	516	consensus Ankyrin repeat protein [General function	97.49
KOG0511	516	consensus Ankyrin repeat protein [General function	97.33
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.29
KOG2384	223	consensus Major histocompatibility complex protein	97.12
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.17
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.17
KOG2505	591	consensus Ankyrin repeat protein [General function	96.11
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.09
KOG2505	591	consensus Ankyrin repeat protein [General function	95.54
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	83.85

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.6e-27  Score=198.51  Aligned_cols=156  Identities=26%  Similarity=0.283  Sum_probs=128.1

Q ss_pred             HHHHHhCCC-CCccccccccCCchhhhhhhcCCCch---hhh-hcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            4 ARFLIRRDT-SWEITDSIQDQSKPKIHRYGANPNAS---SVD-QKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         4 v~~Ll~~ga-~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll-~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++.+++... +.|.++  +..+++|||+||.-|+.+   +|+ +.+..+|.+|+.|+||||+|+..|+.|+|+.|+.+.+
T Consensus        19 veel~~s~~kSL~~r~--dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~   96 (226)
T KOG4412|consen   19 VEELIQSDPKSLNARD--DQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSG   96 (226)
T ss_pred             HHHHHhcChhhhhccc--cccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCC
Confidence            455666654 556665  225677899999999887   555 7788899999999999999999999999999996668


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHH
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~  158 (389)
                      +++|..++.|+|+||+|+..|+.+|.++|+++|+.    ++.+|+.|.||||-|+..|+.++++++...           
T Consensus        97 advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~----i~~kD~~~qtplHRAAavGklkvie~Li~~-----------  161 (226)
T KOG4412|consen   97 ADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL----IRIKDKQGQTPLHRAAAVGKLKVIEYLISQ-----------  161 (226)
T ss_pred             CCcceecCCCcceehhhhcCChhhHHHHHHhcCCC----CcccccccCchhHHHHhccchhhHHHHHhc-----------
Confidence            99999999999999999999999999999999988    999999999999999999888777443211           


Q ss_pred             HHHHhhccchhhhhcccCCCChHHHH
Q 016470          159 ERVEEVSMPHFRNHRNNMGFTPEELF  184 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g~tp~~l~  184 (389)
                              ..-.+..|+.|.||++.+
T Consensus       162 --------~a~~n~qDk~G~TpL~~a  179 (226)
T KOG4412|consen  162 --------GAPLNTQDKYGFTPLHHA  179 (226)
T ss_pred             --------CCCCCcccccCccHHHHH
Confidence                    112567888899998877

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.4e-26  Score=192.91  Aligned_cols=158  Identities=21%  Similarity=0.254  Sum_probs=130.7

Q ss_pred             CHHHHHHH-hCCCCCccccccccCCchhhhhhhcCCCch---hhhhc-CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHH
Q 016470            1 MELARFLI-RRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQK-GIGESSAIDNAETPLFLATKSGCIEIVKEIFN   75 (389)
Q Consensus         1 ~eiv~~Ll-~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~-ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~   75 (389)
                      .|++++|+ +.+..+|.+|   +.|.+|||.|+..|+.+   .|+.+ |+|+|..+..|.|+||+|+.+|..|++++|+ 
T Consensus        51 ~eiv~fLlsq~nv~~ddkD---daGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLl-  126 (226)
T KOG4412|consen   51 VEIVYFLLSQPNVKPDDKD---DAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLL-  126 (226)
T ss_pred             hhHHHHHHhcCCCCCCCcc---ccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHH-
Confidence            47899999 4455555554   55556699999999877   67777 9999999999999999999999999999999 


Q ss_pred             HCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHh
Q 016470           76 VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEEL  155 (389)
Q Consensus        76 ~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l  155 (389)
                      .+|+.++.+|..|.||||.|+.-|+.+++++|+..|+.    +|.+|++|+||||.|...++.+..-.            
T Consensus       127 e~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~----~n~qDk~G~TpL~~al~e~~~d~a~l------------  190 (226)
T KOG4412|consen  127 EKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAP----LNTQDKYGFTPLHHALAEGHPDVAVL------------  190 (226)
T ss_pred             hcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCC----CCcccccCccHHHHHHhccCchHHHH------------
Confidence            88999999999999999999999999999999999998    99999999999999966666554311            


Q ss_pred             hHHHHHHhhccchhhhhcccCCCChHHHHHh
Q 016470          156 LWYERVEEVSMPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~  186 (389)
                             .+.........|++| ||+.++..
T Consensus       191 -------LV~~gAd~~~edke~-t~~~~a~~  213 (226)
T KOG4412|consen  191 -------LVRAGADTDREDKEG-TALRIACN  213 (226)
T ss_pred             -------HHHhccceeeccccC-chHHHHHH
Confidence                   111222356778888 99876654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=2e-26  Score=225.03  Aligned_cols=161  Identities=20%  Similarity=0.196  Sum_probs=128.1

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      ++++++|+++|+++|...  ++.+.||||+|+.+|++.   +|+++|||++.+|.+|.||+|.|++.|+.-.|-+++ ..
T Consensus        91 l~v~r~li~~gadvn~~g--G~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll-~~  167 (600)
T KOG0509|consen   91 LDVARYLISHGADVNAIG--GVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLL-SK  167 (600)
T ss_pred             HHHHHHHHHcCCCccccC--CCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHH-Hh
Confidence            468888888888888766  566777788888888876   888888888888888888888888888888888888 66


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccc-cccccccccccccCCCCccccCCCchhhhhHHhh
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKID-NGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELL  156 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d-~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~  156 (389)
                      ++++|.+|.+|+||||+|+.+|....++.|++-|+.    ++.+| ++|+||||+|+..|+...+.++.+.+        
T Consensus       168 ~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~----~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~--------  235 (600)
T KOG0509|consen  168 GADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS----LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGG--------  235 (600)
T ss_pred             cccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc----ccccccccCCchHHHHHhcCCcceEehhhhcC--------
Confidence            788888888888888888888888778888888877    77776 88888888888888877764332222        


Q ss_pred             HHHHHHhhccchhhhhcccCCCChHHHHHhh
Q 016470          157 WYERVEEVSMPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       157 ~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                                 ...+..|.+|+||.++++++
T Consensus       236 -----------~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  236 -----------ADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             -----------CcccccccCCCCHHHHHHHh
Confidence                       12457788899999999776

>PF13962 PGG: Domain of unknown function

Probab=99.93  E-value=8.4e-26  Score=182.30  Aligned_cols=109  Identities=42%  Similarity=0.656  Sum_probs=95.7

Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHhHhhccCCCCCCCC---CCcccccCCc-chhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 016470          196 KEWLIHTAEGCSVVAVLIATVAFAAAYTVPGGANEE---TGYPILLRHP-FFVTFTVSDVLSLTFSLAAVVTFLSILSSP  271 (389)
Q Consensus       196 ~e~~~~~~~s~~vvA~LiATvtFaA~~t~PGG~~~~---~G~~~l~~~~-~f~~F~~~n~~a~~~S~~~~~~~~~~l~~~  271 (389)
                      +||++++++++++||+|||||||+|++|||||++||   .|+|++.+++ .|++|+++|++||++|+++++++++.+   
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~---   77 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL---   77 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            479999999999999999999999999999999875   6999999888 999999999999999999988766322   


Q ss_pred             ccccchhhchhhhHHHHHHHHHHHHHHHHHHHHHHhhHh
Q 016470          272 FRLQDFKQSLPNKLTMGFAFLFLSVCLMMVAFAATILLM  310 (389)
Q Consensus       272 ~~~~~~~~~l~~~l~~~~~~l~~s~~~m~~af~~~~~~v  310 (389)
                         +++.+.+++.+.++..++++++.+|++||++|+|+|
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v  113 (113)
T PF13962_consen   78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV  113 (113)
T ss_pred             ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence               334455556778888999999999999999999865

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.88  E-value=5.5e-23  Score=201.05  Aligned_cols=161  Identities=19%  Similarity=0.192  Sum_probs=137.2

Q ss_pred             CHHHHHHHhC-CCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCc-CCCCCHHHHHHHcCCHHHHHHHHH
Q 016470            1 MELARFLIRR-DTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAI-DNAETPLFLATKSGCIEIVKEIFN   75 (389)
Q Consensus         1 ~eiv~~Ll~~-ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~   75 (389)
                      +|-|+.|++. |.+++..|   +.+.++||+|+.++.++   +|+++|+|+|+.+ .-|.||||+|+++|+..+|+.|+ 
T Consensus        57 l~~v~~lve~~g~~v~~~D---~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLl-  132 (600)
T KOG0509|consen   57 LETVKELVESEGESVNNPD---REGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLL-  132 (600)
T ss_pred             HHHHHHHHhhcCcCCCCCC---cCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHH-
Confidence            3678899988 99988777   56778899999999988   8999999999998 55999999999999999999999 


Q ss_pred             HCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHh
Q 016470           76 VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEEL  155 (389)
Q Consensus        76 ~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l  155 (389)
                      ++|++++.+|.+|.||+|.|++.|+.-++-|++.++++    +|.+|.+|+||||+|+.+++...+          ..-+
T Consensus       133 qhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d----~d~~D~~grTpLmwAaykg~~~~v----------~~LL  198 (600)
T KOG0509|consen  133 QHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD----IDLRDNNGRTPLMWAAYKGFALFV----------RRLL  198 (600)
T ss_pred             HcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhccc----CCCcCCCCCCHHHHHHHhcccHHH----------HHHH
Confidence            99999999999999999999999999999999999998    999999999999999998875432          1111


Q ss_pred             hHHHHHHhhccchhhhhcc-cCCCChHHHHHhhh
Q 016470          156 LWYERVEEVSMPHFRNHRN-NMGFTPEELFATAN  188 (389)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~n-~~g~tp~~l~~~~~  188 (389)
                      .+...         ...+| ++|.||+|.+...+
T Consensus       199 ~f~a~---------~~~~d~~~g~TpLHwa~~~g  223 (600)
T KOG0509|consen  199 KFGAS---------LLLTDDNHGNTPLHWAVVGG  223 (600)
T ss_pred             Hhccc---------ccccccccCCchHHHHHhcC
Confidence            11111         23344 89999999987654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.88  E-value=9.6e-23  Score=205.56  Aligned_cols=158  Identities=19%  Similarity=0.230  Sum_probs=134.7

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|+++|..+  .+.|.||||+|+..|+.+   .|+++|+++|.+|..|.||||.|++.|+.++++.|+ +.|
T Consensus       148 ~iv~~Ll~~gadin~~~--~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll-~~g  224 (477)
T PHA02878        148 EITKLLLSYGADINMKD--RHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILL-ENG  224 (477)
T ss_pred             HHHHHHHHcCCCCCccC--CCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH-HcC
Confidence            58999999999999887  233778899999999877   899999999999999999999999999999999999 889


Q ss_pred             CcccccCCCCCcHHHHHHHc-CChhhHHHHHhcCCccccccccccc-ccccccccccccCCCCccccCCCchhhhhHHhh
Q 016470           79 QAVEHIDDEGRNILHVAIKY-RQLEIFELVIQMEVPMRRLVRKIDN-GGNTLLHMTGIKRSDYVPEKMEGPALVLQEELL  156 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~-g~~~iv~~Ll~~~~~~~~l~~~~d~-~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~  156 (389)
                      ++++.+|..|+||||+|+.. ++.+++++|+++|++    +|.++. .|+||||+|+.  +.++++.             
T Consensus       225 a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad----vn~~~~~~g~TpLh~A~~--~~~~v~~-------------  285 (477)
T PHA02878        225 ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD----VNAKSYILGLTALHSSIK--SERKLKL-------------  285 (477)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC----CCccCCCCCCCHHHHHcc--CHHHHHH-------------
Confidence            99999999999999999976 789999999999999    899886 89999999943  2222211             


Q ss_pred             HHHHHHhhccchhhhhcccCCCChHHHHHhh
Q 016470          157 WYERVEEVSMPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       157 ~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                          +  +.....++..|.+|.||++.+.+.
T Consensus       286 ----L--l~~gadin~~d~~g~TpL~~A~~~  310 (477)
T PHA02878        286 ----L--LEYGADINSLNSYKLTPLSSAVKQ  310 (477)
T ss_pred             ----H--HHCCCCCCCcCCCCCCHHHHHHHH
Confidence                0  112334678899999999998753

>PHA02946 ankyin-like protein; Provisional

Probab=99.88  E-value=3.2e-22  Score=199.23  Aligned_cols=178  Identities=18%  Similarity=0.204  Sum_probs=130.2

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCC--HHHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGC--IEIVKEIFNV   76 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~--~~~v~~Ll~~   76 (389)
                      +++++|+++|+++|.+|   ..|.||||+|+..|+.+   +|+++|+++|.+|.+|+||||+|+..++  .+++++|+ .
T Consensus        53 ~iv~~Ll~~Gadvn~~d---~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl-~  128 (446)
T PHA02946         53 RFVEELLHRGYSPNETD---DDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLV-Q  128 (446)
T ss_pred             HHHHHHHHCcCCCCccC---CCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHH-H
Confidence            68999999999999888   56778899999999877   8899999999999999999999987664  78899888 7


Q ss_pred             CCCcccc-cCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCC--CccccC---------
Q 016470           77 YPQAVEH-IDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSD--YVPEKM---------  144 (389)
Q Consensus        77 ~~~~~~~-~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~--~~~~~l---------  144 (389)
                      +|++++. .|.+|+|||| |+..|+.+++++|++.|++    ++.+|..|+||||+|+..++.  ++++.+         
T Consensus       129 ~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad----~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~  203 (446)
T PHA02946        129 YGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE----ARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK  203 (446)
T ss_pred             cCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc----ccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc
Confidence            8888885 6788888887 5666788888888888877    788888888888887654443  222211         


Q ss_pred             ----CCchhhhhHHh--hHHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          145 ----EGPALVLQEEL--LWYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       145 ----~~~~~~l~~~l--~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                          ..+++.....-  ...+.++-+.+....+.+|++|+||++++.+.+
T Consensus       204 ~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~  253 (446)
T PHA02946        204 PDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTL  253 (446)
T ss_pred             cCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Confidence                11222221111  011222223344557888999999999987764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3.2e-22  Score=199.38  Aligned_cols=128  Identities=20%  Similarity=0.222  Sum_probs=116.1

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.|+++|++++.++   ..+.||||+|+..|+.+   .|+++|++++.+|.+|.||||+|+..|+.++++.|+ +.|
T Consensus       105 ~~i~~ll~~g~d~n~~~---~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll-~~g  180 (434)
T PHA02874        105 DMIKTILDCGIDVNIKD---AELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL-EKG  180 (434)
T ss_pred             HHHHHHHHCcCCCCCCC---CCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHH-HCC
Confidence            45666777777777776   56678899999999877   899999999999999999999999999999999999 889


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCC
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~  137 (389)
                      ++++..|..|+||||+|+..|+.+++++|+++|++    ++.++.+|.||||.|+..+.
T Consensus       181 ~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~----i~~~~~~g~TpL~~A~~~~~  235 (434)
T PHA02874        181 AYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH----IMNKCKNGFTPLHNAIIHNR  235 (434)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CcCCCCCCCCHHHHHHHCCh
Confidence            99999999999999999999999999999999998    89999999999999998654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.87  E-value=5.1e-22  Score=185.40  Aligned_cols=128  Identities=18%  Similarity=0.167  Sum_probs=112.3

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++  ..|   ..+.||||+|+..|+.+   .|+++|++++.+|  |+||||+|+..|+.++++.|+ .+|
T Consensus        13 ~~~~~Lis~~a~--~~D---~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL-~~G   84 (284)
T PHA02791         13 QLKSFLSSKDAF--KAD---VHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILL-FSG   84 (284)
T ss_pred             HHHHHHHhCCCC--CCC---CCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHH-HCC
Confidence            678999999886  445   55678899999999877   8889999988764  689999999999999999999 789


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccc-ccccccccccCCCCcc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGG-NTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G-~TpLhlA~~~~~~~~~  141 (389)
                      ++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+| .||||+|+..++.+++
T Consensus        85 advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad----in~~~~~g~~TpL~~Aa~~g~~eiv  144 (284)
T PHA02791         85 MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR----LMFYGKTGWKTSFYHAVMLNDVSIV  144 (284)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----cCccCCCCCcHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999998    88888888 4899999998887766

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.2e-22  Score=199.37  Aligned_cols=161  Identities=16%  Similarity=0.128  Sum_probs=135.6

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      .|++++|+++|+++|..+   ..|.+|||.|+..|+.+   .|+++|++++.++.+|.||||.|++.|+.++++.|+ ..
T Consensus        15 ~~iv~~Ll~~g~~~n~~~---~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll-~~   90 (413)
T PHA02875         15 LDIARRLLDIGINPNFEI---YDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL-DL   90 (413)
T ss_pred             HHHHHHHHHCCCCCCccC---CCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH-Hc
Confidence            378999999999999877   56778899999999877   899999999999999999999999999999999999 55


Q ss_pred             CCcc-cccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhh
Q 016470           78 PQAV-EHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELL  156 (389)
Q Consensus        78 ~~~~-~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~  156 (389)
                      |... +..+.+|+||||+|+..|+.+++++|+++|++    ++.+|.+|.||||+|+..++.++++.+..          
T Consensus        91 ~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad----~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~----------  156 (413)
T PHA02875         91 GKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD----PDIPNTDKFSPLHLAVMMGDIKGIELLID----------  156 (413)
T ss_pred             CCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHh----------
Confidence            5544 45678899999999999999999999999999    99999999999999999887665522211          


Q ss_pred             HHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          157 WYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       157 ~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                               .+...+.+|..|.||++.+...+
T Consensus       157 ---------~g~~~~~~d~~g~TpL~~A~~~g  179 (413)
T PHA02875        157 ---------HKACLDIEDCCGCTPLIIAMAKG  179 (413)
T ss_pred             ---------cCCCCCCCCCCCCCHHHHHHHcC
Confidence                     11224667888899998887654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.9e-22  Score=188.22  Aligned_cols=131  Identities=15%  Similarity=0.118  Sum_probs=95.5

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..+     +.||||.|+..|+.+   .|+++|++++.+|.+|+||||+|+..|+.++++.|+ ..|
T Consensus        44 eiv~~Ll~~ga~~n~~d-----~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll-~~g  117 (284)
T PHA02791         44 RLVCTLLNAGALKNLLE-----NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFV-KKN  117 (284)
T ss_pred             HHHHHHHHCcCCCcCCC-----CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCC
Confidence            57778888887766543     246688887777765   677788888888888888888888888888888887 677


Q ss_pred             CcccccCCCCC-cHHHHHHHcCChhhHHHHHhcCCcccccccccc-cccccccccccccCCCCccccC
Q 016470           79 QAVEHIDDEGR-NILHVAIKYRQLEIFELVIQMEVPMRRLVRKID-NGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus        79 ~~~~~~d~~G~-t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d-~~G~TpLhlA~~~~~~~~~~~l  144 (389)
                      ++++.++..|+ ||||+|+..|+.+++++|++++.+      ..| ..|+||||+|++.|+.++++.+
T Consensus       118 adin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~------~~d~~~g~TpLh~Aa~~g~~eiv~lL  179 (284)
T PHA02791        118 WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS------TFDLAILLSCIHITIKNGHVDMMILL  179 (284)
T ss_pred             CCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc------ccccccCccHHHHHHHcCCHHHHHHH
Confidence            77777777764 788888888888888888776543      123 2477888888877777766544

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3.4e-22  Score=179.44  Aligned_cols=157  Identities=18%  Similarity=0.162  Sum_probs=125.2

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCC--Cch---hhhhcCCCCCCCc-CCCCCHHHHHHHc---CCHHHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANP--NAS---SVDQKGIGESSAI-DNAETPLFLATKS---GCIEIVK   71 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~--~~~---~Ll~~ga~~n~~d-~~G~tpLh~Aa~~---g~~~~v~   71 (389)
                      +++|+.|++.+   |..+   +.+.||||.|+..+  +.+   +|+++|+++|.++ ..|.||||+|+..   ++.++++
T Consensus        34 ~~~vk~Li~~~---n~~~---~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~  107 (209)
T PHA02859         34 IEGVKKWIKFV---NDCN---DLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILK  107 (209)
T ss_pred             HHHHHHHHHhh---hccC---ccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHH
Confidence            36889998763   3444   56778899988754  444   8999999999997 4899999998764   5799999


Q ss_pred             HHHHHCCCcccccCCCCCcHHHHHHH--cCChhhHHHHHhcCCcccccccccccccccccccc-cccCCCCccccCCCch
Q 016470           72 EIFNVYPQAVEHIDDEGRNILHVAIK--YRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMT-GIKRSDYVPEKMEGPA  148 (389)
Q Consensus        72 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA-~~~~~~~~~~~l~~~~  148 (389)
                      .|+ ++|++++.+|.+|+||||.|+.  .++.+++++|+++|++    ++.+|.+|+||||.+ +..++.++++.+.   
T Consensus       108 ~Ll-~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gad----in~~d~~g~t~Lh~~a~~~~~~~iv~~Ll---  179 (209)
T PHA02859        108 ILI-DSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVS----FLNKDFDNNNILYSYILFHSDKKIFDFLT---  179 (209)
T ss_pred             HHH-HCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC----cccccCCCCcHHHHHHHhcCCHHHHHHHH---
Confidence            999 8999999999999999999986  4689999999999999    999999999999964 4455544442111   


Q ss_pred             hhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhh
Q 016470          149 LVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       149 ~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                                      ......+.+|..|+||++++..+
T Consensus       180 ----------------~~Gadi~~~d~~g~tpl~la~~~  202 (209)
T PHA02859        180 ----------------SLGIDINETNKSGYNCYDLIKFR  202 (209)
T ss_pred             ----------------HcCCCCCCCCCCCCCHHHHHhhh
Confidence                            12223578899999999998754

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=4.8e-22  Score=200.45  Aligned_cols=158  Identities=18%  Similarity=0.189  Sum_probs=131.3

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCc-------------------------------------------
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNA-------------------------------------------   37 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~-------------------------------------------   37 (389)
                      .|+|++|+++|+++|..+   ..|.||||.|+..|+.                                           
T Consensus        50 ~e~vk~Ll~~gadvn~~d---~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~~Ll~~~~~  126 (477)
T PHA02878         50 LDVVKSLLTRGHNVNQPD---HRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFKIILTNRYK  126 (477)
T ss_pred             HHHHHHHHHCCCCCCCCC---CCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHHHHHhCccc
Confidence            378999999999999888   5667889998865321                                           


Q ss_pred             ------------------------hhhhhcCCCCCCCcCC-CCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHH
Q 016470           38 ------------------------SSVDQKGIGESSAIDN-AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNIL   92 (389)
Q Consensus        38 ------------------------~~Ll~~ga~~n~~d~~-G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~L   92 (389)
                                              +.|+++|+++|.+|.. |.||||+|+..|+.++++.|+ .+|++++.+|..|+|||
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll-~~gad~n~~d~~g~tpL  205 (477)
T PHA02878        127 NIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPL  205 (477)
T ss_pred             CcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHH-HCCCCCCCcCCCCCCHH
Confidence                                    1567789999999998 999999999999999999999 88999999999999999


Q ss_pred             HHHHHcCChhhHHHHHhcCCccccccccccccccccccccccc-CCCCccccCCCchhhhhHHhhHHHHHHhhccchhhh
Q 016470           93 HVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIK-RSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRN  171 (389)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~-~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~  171 (389)
                      |.|+..|+.+++++|++.|++    ++.+|.+|+||||+|+.. ++.++++.+.      +             .+...+
T Consensus       206 h~A~~~~~~~iv~~Ll~~ga~----in~~d~~g~TpLh~A~~~~~~~~iv~~Ll------~-------------~gadvn  262 (477)
T PHA02878        206 HHAVKHYNKPIVHILLENGAS----TDARDKCGNTPLHISVGYCKDYDILKLLL------E-------------HGVDVN  262 (477)
T ss_pred             HHHHHhCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHhcCCHHHHHHHH------H-------------cCCCCC
Confidence            999999999999999999999    999999999999999965 4444441111      1             122244


Q ss_pred             hccc-CCCChHHHHH
Q 016470          172 HRNN-MGFTPEELFA  185 (389)
Q Consensus       172 ~~n~-~g~tp~~l~~  185 (389)
                      .++. .|.||++++.
T Consensus       263 ~~~~~~g~TpLh~A~  277 (477)
T PHA02878        263 AKSYILGLTALHSSI  277 (477)
T ss_pred             ccCCCCCCCHHHHHc
Confidence            5554 7999999983

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.87  E-value=6e-22  Score=197.45  Aligned_cols=134  Identities=20%  Similarity=0.210  Sum_probs=99.7

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhh-----------------------cCCCCCCCcCCCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQ-----------------------KGIGESSAIDNAE   55 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~-----------------------~ga~~n~~d~~G~   55 (389)
                      +++++|+++|+++|..+   ..+.+|||.|+..|+.+   +|++                       +|++++.+|..|.
T Consensus        49 ~iv~~Ll~~Ga~~n~~~---~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~  125 (434)
T PHA02874         49 KIVELFIKHGADINHIN---TKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELK  125 (434)
T ss_pred             HHHHHHHHCCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCc
Confidence            67788888888877665   44556688777777654   3443                       4455667777788


Q ss_pred             CHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccccccccccccc
Q 016470           56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIK  135 (389)
Q Consensus        56 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~  135 (389)
                      ||||+|+..|+.++++.|+ +.|++++.+|.+|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..
T Consensus       126 T~Lh~A~~~~~~~~v~~Ll-~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~----~n~~~~~g~tpL~~A~~~  200 (434)
T PHA02874        126 TFLHYAIKKGDLESIKMLF-EYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAY----ANVKDNNGESPLHNAAEY  200 (434)
T ss_pred             cHHHHHHHCCCHHHHHHHH-hCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHc
Confidence            8888888888888888877 67777888888888888888888888888888888877    777788888888888877


Q ss_pred             CCCCcccc
Q 016470          136 RSDYVPEK  143 (389)
Q Consensus       136 ~~~~~~~~  143 (389)
                      ++.++++.
T Consensus       201 g~~~iv~~  208 (434)
T PHA02874        201 GDYACIKL  208 (434)
T ss_pred             CCHHHHHH
Confidence            77666543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.86  E-value=6.1e-22  Score=204.35  Aligned_cols=135  Identities=15%  Similarity=0.185  Sum_probs=91.7

Q ss_pred             HHHHHHHhCC-CCCccc-cccccCCchhhhhhhcC--CC---chhhhhcCCCCCCCcCCCCCHHHHHHHcCC--HHHHHH
Q 016470            2 ELARFLIRRD-TSWEIT-DSIQDQSKPKIHRYGAN--PN---ASSVDQKGIGESSAIDNAETPLFLATKSGC--IEIVKE   72 (389)
Q Consensus         2 eiv~~Ll~~g-a~vn~~-~~~~~~~~~~Lh~a~~~--~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~--~~~v~~   72 (389)
                      |++++|+++| +|+|.. +   +.|.||||.|+..  ++   +++|+++|+++|.+|.+|.||||+|++.|+  .+++++
T Consensus       156 eiVk~LLe~G~ADIN~~~d---~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVkl  232 (764)
T PHA02716        156 DLIKYMVDVGIVNLNYVCK---KTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKK  232 (764)
T ss_pred             HHHHHHHHCCCCCcccccC---CCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHH
Confidence            6777777777 777766 4   4556667765433  22   336777777777777777777777777774  477777


Q ss_pred             HHHHCCCcccccCCCCCcHHHHH-------------------------------------HHcCChhhHHHHHhcCCccc
Q 016470           73 IFNVYPQAVEHIDDEGRNILHVA-------------------------------------IKYRQLEIFELVIQMEVPMR  115 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A-------------------------------------~~~g~~~iv~~Ll~~~~~~~  115 (389)
                      |+ ++|++++.+|..|+||||.|                                     +++|+.+++++|+++|++  
T Consensus       233 LL-e~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAd--  309 (764)
T PHA02716        233 II-ELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVK--  309 (764)
T ss_pred             HH-HcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCc--
Confidence            77 67777777777777777754                                     345677777777777777  


Q ss_pred             ccccccccccccccccccc--cCCCCccccC
Q 016470          116 RLVRKIDNGGNTLLHMTGI--KRSDYVPEKM  144 (389)
Q Consensus       116 ~l~~~~d~~G~TpLhlA~~--~~~~~~~~~l  144 (389)
                        ++.+|.+|+||||+|+.  .++.++++.+
T Consensus       310 --IN~kD~~G~TPLH~Aaa~~~~~~eIVklL  338 (764)
T PHA02716        310 --LHYKDSAGRTCLHQYILRHNISTDIIKLL  338 (764)
T ss_pred             --eeccCCCCCCHHHHHHHHhCCCchHHHHH
Confidence              77777777777777653  3344554433

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.86  E-value=7.6e-22  Score=199.14  Aligned_cols=179  Identities=16%  Similarity=0.131  Sum_probs=122.0

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhh--cCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcC--CHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYG--ANPNAS---SVDQKGIGESSAIDNAETPLFLATKSG--CIEIVKEIF   74 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~--~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g--~~~~v~~Ll   74 (389)
                      |++++|+++|++++..+   ..+.+|||.|+  ..|+.+   .|+++|++++.+|..|.||||+|+..|  +.++++.|+
T Consensus        87 ~iv~~Ll~~ga~i~~~d---~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll  163 (480)
T PHA03100         87 EIVKLLLEYGANVNAPD---NNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLI  163 (480)
T ss_pred             HHHHHHHHCCCCCCCCC---CCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHH
Confidence            67788888888876666   55666788887  777665   777888888888888888888888888  788888877


Q ss_pred             HHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccc------ccccccccccCC--CCccccCCC
Q 016470           75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGG------NTLLHMTGIKRS--DYVPEKMEG  146 (389)
Q Consensus        75 ~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G------~TpLhlA~~~~~--~~~~~~l~~  146 (389)
                       ++|++++.+|..|+||||+|+..|+.+++++|+++|++    ++..+..|      .||||.|+..++  .++++.+..
T Consensus       164 -~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~----~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~  238 (480)
T PHA03100        164 -DKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD----INAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS  238 (480)
T ss_pred             -HCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC----ccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH
Confidence             67777877777888888888888888888888887777    66667666      677777776666  444332211


Q ss_pred             -------------chhhhhHHhhHHHHHHhh-ccchhhhhcccCCCChHHHHHhhh
Q 016470          147 -------------PALVLQEELLWYERVEEV-SMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       147 -------------~~~~l~~~l~~~~~v~~~-~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                                   +++.........+.++.+ ..+...+.+|.+|+||++++.+.+
T Consensus       239 ~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        239 YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhC
Confidence                         112211111111112211 123356789999999999987654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.86  E-value=8e-22  Score=203.47  Aligned_cols=125  Identities=19%  Similarity=0.224  Sum_probs=112.0

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCc-----hhhhhcCCCCCCCcCCCCCHHHHH---------------
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNA-----SSVDQKGIGESSAIDNAETPLFLA---------------   61 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~-----~~Ll~~ga~~n~~d~~G~tpLh~A---------------   61 (389)
                      +++++|+++|+++|.+|   ..|.||||.|+..|+.     +.|+++|+|+|.+|..|.||||.|               
T Consensus       193 eIVklLLe~GADVN~kD---~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiL  269 (764)
T PHA02716        193 DILEWLCNNGVNVNLQN---NHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIY  269 (764)
T ss_pred             HHHHHHHHcCCCCCCCC---CCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHH
Confidence            78999999999999988   5677889999998853     389999999999999999999975               


Q ss_pred             ----------------------HHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHH--cCChhhHHHHHhcCCccccc
Q 016470           62 ----------------------TKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIK--YRQLEIFELVIQMEVPMRRL  117 (389)
Q Consensus        62 ----------------------a~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~--~g~~~iv~~Ll~~~~~~~~l  117 (389)
                                            ++.|+.++++.|+ +.|++++.+|.+|+||||+|+.  +++.+++++|+++|++    
T Consensus       270 ie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLL-e~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GAD----  344 (764)
T PHA02716        270 IESLDGNKVKNIPMILHSYITLARNIDISVVYSFL-QPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGND----  344 (764)
T ss_pred             HHhccccccccchhhhHHHHHHHHcCCHHHHHHHH-hCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCC----
Confidence                                  4567889999999 7899999999999999999874  4688999999999999    


Q ss_pred             ccccccccccccccccc
Q 016470          118 VRKIDNGGNTLLHMTGI  134 (389)
Q Consensus       118 ~~~~d~~G~TpLhlA~~  134 (389)
                      ++.+|.+|+||||+|+.
T Consensus       345 IN~kD~~G~TPLH~A~~  361 (764)
T PHA02716        345 LNEPDNIGNTVLHTYLS  361 (764)
T ss_pred             CccCCCCCCCHHHHHHH
Confidence            99999999999999875

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.85  E-value=1.4e-21  Score=197.25  Aligned_cols=180  Identities=21%  Similarity=0.251  Sum_probs=146.8

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhh-----hhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHH--HcCCHHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHR-----YGANPNAS---SVDQKGIGESSAIDNAETPLFLAT--KSGCIEIV   70 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~-----a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa--~~g~~~~v   70 (389)
                      .+++++|+++|++++..+   ..+.+|+|.     |+..++.+   .|+++|++++..|..|.||||+|+  ..|+.+++
T Consensus        48 ~~ivk~Ll~~g~~~~~~~---~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv  124 (480)
T PHA03100         48 IDVVKILLDNGADINSST---KNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIV  124 (480)
T ss_pred             HHHHHHHHHcCCCCCCcc---ccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHH
Confidence            478999999999998877   556678999     99999877   899999999999999999999999  99999999


Q ss_pred             HHHHHHCCCcccccCCCCCcHHHHHHHcC--ChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCch
Q 016470           71 KEIFNVYPQAVEHIDDEGRNILHVAIKYR--QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPA  148 (389)
Q Consensus        71 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~  148 (389)
                      ++|+ ++|++++..|..|+||||.|+..|  +.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+....
T Consensus       125 ~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d----in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  199 (480)
T PHA03100        125 EYLL-DNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD----INAKNRYGYTPLHIAVEKGNIDVIKFLLDNG  199 (480)
T ss_pred             HHHH-HcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC----cccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            9999 889999999999999999999999  99999999999999    9999999999999999999877775542211


Q ss_pred             -------------------hhhhHHhhH--HHHHHhhc-cchhhhhcccCCCChHHHHHhhh
Q 016470          149 -------------------LVLQEELLW--YERVEEVS-MPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       149 -------------------~~l~~~l~~--~~~v~~~~-~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                                         +........  .+.++.+. .+...+.+|.+|.||++.+...+
T Consensus       200 a~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~  261 (480)
T PHA03100        200 ADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNN  261 (480)
T ss_pred             CCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence                               111111111  12222221 22345778899999999988764

>PHA02798 ankyrin-like protein; Provisional

Probab=99.85  E-value=2.2e-21  Score=196.23  Aligned_cols=126  Identities=17%  Similarity=0.246  Sum_probs=107.9

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcC-----CC---chhhhhcCCCCCCCcCCCCCHHHHHHHcC---CHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGAN-----PN---ASSVDQKGIGESSAIDNAETPLFLATKSG---CIEI   69 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~-----~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g---~~~~   69 (389)
                      .|++++|+++|+++|..+   ..|.||||.++..     +.   ++.|+++|+|+|.+|.+|+||||+|+..|   +.++
T Consensus        51 ~~iv~~Ll~~Gadvn~~d---~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~i  127 (489)
T PHA02798         51 TDIVKLFINLGANVNGLD---NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEI  127 (489)
T ss_pred             HHHHHHHHHCCCCCCCCC---CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHH
Confidence            378999999999999888   5667889977643     22   33899999999999999999999999876   6899


Q ss_pred             HHHHHHHCCCcccccCCCCCcHHHHHHHcCC---hhhHHHHHhcCCcccccccccc-cccccccccccc
Q 016470           70 VKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ---LEIFELVIQMEVPMRRLVRKID-NGGNTLLHMTGI  134 (389)
Q Consensus        70 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~---~~iv~~Ll~~~~~~~~l~~~~d-~~G~TpLhlA~~  134 (389)
                      +++|+ ++|++++.+|.+|.||||+|++.++   .+++++|+++|++    ++.+| ..|.||||.++.
T Consensus       128 v~~Ll-~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad----in~~~~~~~~t~Lh~~~~  191 (489)
T PHA02798        128 LLFMI-ENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD----INTHNNKEKYDTLHCYFK  191 (489)
T ss_pred             HHHHH-HcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC----cccccCcCCCcHHHHHHH
Confidence            99999 8899999999999999999999988   8999999999988    77775 578888887764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.85  E-value=5.3e-21  Score=171.73  Aligned_cols=128  Identities=14%  Similarity=0.239  Sum_probs=112.5

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcC---CCch---hhhhcCCCCCCCcCCCCCHHHHHHH--cCCHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGAN---PNAS---SVDQKGIGESSAIDNAETPLFLATK--SGCIEIVKEI   73 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~---~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~--~g~~~~v~~L   73 (389)
                      |++++|+++|+++|..+  ...+.||||+|+..   +..+   +|+++|+++|.+|.+|.||||.|+.  .++.+++++|
T Consensus        67 eiv~~Ll~~gadvn~~~--~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~L  144 (209)
T PHA02859         67 EILKFLIENGADVNFKT--RDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLL  144 (209)
T ss_pred             HHHHHHHHCCCCCCccC--CCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            78999999999999875  23567889987653   2334   7899999999999999999999886  4689999999


Q ss_pred             HHHCCCcccccCCCCCcHHHH-HHHcCChhhHHHHHhcCCcccccccccccccccccccccccC
Q 016470           74 FNVYPQAVEHIDDEGRNILHV-AIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus        74 l~~~~~~~~~~d~~G~t~Lh~-A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~  136 (389)
                      + ++|++++.+|.+|+||||. |+..++.+++++|+++|++    ++.+|..|.||||+|..++
T Consensus       145 i-~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gad----i~~~d~~g~tpl~la~~~~  203 (209)
T PHA02859        145 I-DSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGID----INETNKSGYNCYDLIKFRN  203 (209)
T ss_pred             H-HcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHhhhh
Confidence            9 8899999999999999996 5678899999999999999    9999999999999998753

>PHA03095 ankyrin-like protein; Provisional

Probab=99.84  E-value=3.6e-21  Score=193.75  Aligned_cols=181  Identities=19%  Similarity=0.157  Sum_probs=139.3

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCC---Cch---hhhhcCCCCCCCcCCCCCHHHHHHHcC-CHHHHHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANP---NAS---SVDQKGIGESSAIDNAETPLFLATKSG-CIEIVKEI   73 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~---~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g-~~~~v~~L   73 (389)
                      +|++++|+++|+++|..+   ..+.||||.|+..+   ..+   .|+++|+|+|.+|..|.||||+|+..| +.+++++|
T Consensus        27 ~~~v~~Ll~~ga~vn~~~---~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lL  103 (471)
T PHA03095         27 VEEVRRLLAAGADVNFRG---EYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLL  103 (471)
T ss_pred             HHHHHHHHHcCCCcccCC---CCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHH
Confidence            478999999999999887   56778899999887   544   899999999999999999999999999 59999999


Q ss_pred             HHHCCCcccccCCCCCcHHHHHH--HcCChhhHHHHHhcCCcccccccccccccccccccccccCC--CCccccCCC---
Q 016470           74 FNVYPQAVEHIDDEGRNILHVAI--KYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS--DYVPEKMEG---  146 (389)
Q Consensus        74 l~~~~~~~~~~d~~G~t~Lh~A~--~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~--~~~~~~l~~---  146 (389)
                      + ++|++++.+|..|+||||+|+  .+++.+++++|+++|++    ++.+|.+|.||||+|+..+.  .++++.+..   
T Consensus       104 l-~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad----~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~  178 (471)
T PHA03095        104 I-KAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGAD----VNALDLYGMTPLAVLLKSRNANVELLRLLIDAGA  178 (471)
T ss_pred             H-HcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCC
Confidence            9 889999999999999999999  55688999999999999    99999999999999987653  223322211   


Q ss_pred             ----------chhhhhHHh--hHHHHHHh-hccchhhhhcccCCCChHHHHHhhhh
Q 016470          147 ----------PALVLQEEL--LWYERVEE-VSMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       147 ----------~~~~l~~~l--~~~~~v~~-~~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                                ..+......  ...+.++. +.....++.+|.+|.||++++...+.
T Consensus       179 ~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~  234 (471)
T PHA03095        179 DVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSS  234 (471)
T ss_pred             CCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCC
Confidence                      111111000  00111111 11233457788899999998887654

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.84  E-value=5.4e-21  Score=193.60  Aligned_cols=126  Identities=11%  Similarity=0.126  Sum_probs=103.0

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhc------CCC---chhhhhcCCCCCCCcCCCCCHHHHHHHc---CCHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGA------NPN---ASSVDQKGIGESSAIDNAETPLFLATKS---GCIEI   69 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~------~~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~---g~~~~   69 (389)
                      |+|++|+++|+++|.++   . +.||||.+..      .+.   +++|+++|+|+|.+|.+|.||||.|+..   |+.++
T Consensus        51 ~iv~~Ll~~GAdvn~~~---~-~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~ei  126 (494)
T PHA02989         51 KIVKLLIDNGADVNYKG---Y-IETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDM  126 (494)
T ss_pred             HHHHHHHHcCCCccCCC---C-CCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHH
Confidence            78999999999999775   2 3567886643      232   4488999999999999999999988755   67899


Q ss_pred             HHHHHHHCCCcc-cccCCCCCcHHHHHHHc--CChhhHHHHHhcCCcccccccc-cccccccccccccccC
Q 016470           70 VKEIFNVYPQAV-EHIDDEGRNILHVAIKY--RQLEIFELVIQMEVPMRRLVRK-IDNGGNTLLHMTGIKR  136 (389)
Q Consensus        70 v~~Ll~~~~~~~-~~~d~~G~t~Lh~A~~~--g~~~iv~~Ll~~~~~~~~l~~~-~d~~G~TpLhlA~~~~  136 (389)
                      +++|+ ++|+++ +.+|..|+||||+|+..  ++.+++++|+++|++    ++. .|..|.||||.|+..+
T Consensus       127 v~~Ll-~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad----i~~~~~~~g~tpL~~a~~~~  192 (494)
T PHA02989        127 LRFLL-SKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN----LFEKTSLYGLTPMNIYLRND  192 (494)
T ss_pred             HHHHH-HCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC----ccccccccCCChHHHHHhcc
Confidence            99999 789999 78899999999998764  578999999999998    777 6788999999886543

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.84  E-value=4.1e-21  Score=190.24  Aligned_cols=134  Identities=17%  Similarity=0.154  Sum_probs=119.3

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCC-CCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGES-SAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n-~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++|++++..+   ..+.+|||.|+..|+.+   .|+++|++.+ ..+.+|.||||+|+..|+.+++++|+ +.
T Consensus        49 ~~v~~Ll~~ga~~~~~~---~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll-~~  124 (413)
T PHA02875         49 EAIKLLMKHGAIPDVKY---PDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLI-AR  124 (413)
T ss_pred             HHHHHHHhCCCCccccC---CCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHH-hC
Confidence            78999999999988776   44567799999999877   8889998764 45778999999999999999999999 88


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcccc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEK  143 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~  143 (389)
                      |++++.+|.+|+||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+..++.++++.
T Consensus       125 gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~----~~~~d~~g~TpL~~A~~~g~~eiv~~  186 (413)
T PHA02875        125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC----LDIEDCCGCTPLIIAMAKGDIAICKM  186 (413)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999998    89999999999999999988776633

>PHA02946 ankyin-like protein; Provisional

Probab=99.84  E-value=2.3e-20  Score=185.90  Aligned_cols=126  Identities=13%  Similarity=0.160  Sum_probs=68.5

Q ss_pred             HHHHHHHhCCCCCcc-ccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCC--HHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEI-TDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGC--IEIVKEIFN   75 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~-~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~--~~~v~~Ll~   75 (389)
                      |++++|+++|+++|. .+   ..+.|||| ++..+..+   .|+++|++++.+|..|+||||.|+..++  .++++.|+ 
T Consensus       121 e~v~lLl~~Gadin~~~d---~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll-  195 (446)
T PHA02946        121 ERINLLVQYGAKINNSVD---EEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMM-  195 (446)
T ss_pred             HHHHHHHHcCCCcccccC---CCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHH-
Confidence            456666666666653 22   34445555 33333333   5555566665556566666655554332  45555555 


Q ss_pred             HCCCcccccCCCCCcHHHHHHHcC--ChhhHHHHHhcCCcccccccccccccccccccccccCC
Q 016470           76 VYPQAVEHIDDEGRNILHVAIKYR--QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        76 ~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~  137 (389)
                      +.|++++.+|.+|+||||+|+.+|  +.+++++|++ |++    +|.+|.+|+||||+|++.++
T Consensus       196 ~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gad----in~~d~~G~TpLh~A~~~~~  254 (446)
T PHA02946        196 KLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STD----VNKQNKFGDSPLTLLIKTLS  254 (446)
T ss_pred             HcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCC----CCCCCCCCCCHHHHHHHhCC
Confidence            555555555656666666665554  4455555553 455    55556666666666555443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.83  E-value=6.7e-21  Score=192.69  Aligned_cols=127  Identities=16%  Similarity=0.191  Sum_probs=103.4

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCC--Cch---hhhhcCCCCCCCcCCCCCHHHHHHHc-----CCHHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANP--NAS---SVDQKGIGESSAIDNAETPLFLATKS-----GCIEIV   70 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~--~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~-----g~~~~v   70 (389)
                      ++.|++|++.+. ++...   + +.++++.+...+  ..+   .|+++|+|+|.+|..|.||||.|+.+     ++.+++
T Consensus        18 ~~~v~~ll~~~~-~~~~~---~-~~~~~~~yl~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv   92 (489)
T PHA02798         18 LSTVKLLIKSCN-PNEIV---N-EYSIFQKYLQRDSPSTDIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIV   92 (489)
T ss_pred             HHHHHHHHhcCC-hhhhc---c-cchHHHHHHhCCCCCHHHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHH
Confidence            468999998753 33322   2 234455344333  333   89999999999999999999998864     678999


Q ss_pred             HHHHHHCCCcccccCCCCCcHHHHHHHcC---ChhhHHHHHhcCCcccccccccccccccccccccccCC
Q 016470           71 KEIFNVYPQAVEHIDDEGRNILHVAIKYR---QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        71 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~  137 (389)
                      +.|+ ++|++++.+|.+|+||||+|+.++   +.+++++|+++|++    ++.+|.+|.||||+|++.++
T Consensus        93 ~~Ll-~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad----vn~~d~~g~tpL~~a~~~~~  157 (489)
T PHA02798         93 KILI-ENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD----TTLLDKDGFTMLQVYLQSNH  157 (489)
T ss_pred             HHHH-HCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC----ccccCCCCCcHHHHHHHcCC
Confidence            9999 889999999999999999999886   67999999999999    99999999999999998776

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.83  E-value=1.2e-20  Score=191.10  Aligned_cols=125  Identities=16%  Similarity=0.155  Sum_probs=103.6

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhh-cC-CC---chhhhhcCCCCCCCcCCCCCHHHHHHHcC------CHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYG-AN-PN---ASSVDQKGIGESSAIDNAETPLFLATKSG------CIEI   69 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~-~~-~~---~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g------~~~~   69 (389)
                      +|++++|+++|+|+|..+   ++ .++||.++ .. ++   +++|+++|+|+|.++ .+.||||.|+.++      +.++
T Consensus        16 ~~~v~~LL~~GadvN~~~---~g-~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~i   90 (494)
T PHA02989         16 KNALEFLLRTGFDVNEEY---RG-NSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKI   90 (494)
T ss_pred             HHHHHHHHHcCCCccccc---CC-CCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHH
Confidence            478999999999999764   33 34566443 33 24   449999999999886 5799999998754      5789


Q ss_pred             HHHHHHHCCCcccccCCCCCcHHHHHHHc---CChhhHHHHHhcCCcccccc-ccccccccccccccccc
Q 016470           70 VKEIFNVYPQAVEHIDDEGRNILHVAIKY---RQLEIFELVIQMEVPMRRLV-RKIDNGGNTLLHMTGIK  135 (389)
Q Consensus        70 v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~l~-~~~d~~G~TpLhlA~~~  135 (389)
                      +++|+ ++|++++.+|.+|+||||.|+..   ++.+++++|+++|++    + +.+|.+|+||||+|+..
T Consensus        91 v~~Ll-~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gad----in~~~d~~g~tpLh~a~~~  155 (494)
T PHA02989         91 VKLLL-KFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGIN----VNDVKNSRGYNLLHMYLES  155 (494)
T ss_pred             HHHHH-HCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCC----cccccCCCCCCHHHHHHHh
Confidence            99999 89999999999999999998766   578999999999999    8 78999999999998653

>PHA03095 ankyrin-like protein; Provisional

Probab=99.83  E-value=1.9e-20  Score=188.51  Aligned_cols=179  Identities=19%  Similarity=0.160  Sum_probs=135.4

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCC-ch---hhhhcCCCCCCCcCCCCCHHHHHH--HcCCHHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPN-AS---SVDQKGIGESSAIDNAETPLFLAT--KSGCIEIVKEIFN   75 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~-~~---~Ll~~ga~~n~~d~~G~tpLh~Aa--~~g~~~~v~~Ll~   75 (389)
                      |++++|+++|+++|..+   ..|.||||+|+..++ .+   +|+++|+++|.+|..|.||||+|+  ..++.++++.|+ 
T Consensus        64 ~iv~~Ll~~Gadin~~~---~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll-  139 (471)
T PHA03095         64 DIVRLLLEAGADVNAPE---RCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLL-  139 (471)
T ss_pred             HHHHHHHHCCCCCCCCC---CCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHH-
Confidence            78999999999999888   467788999999884 44   899999999999999999999999  567889999999 


Q ss_pred             HCCCcccccCCCCCcHHHHHHHcC--ChhhHHHHHhcCCcccccccccccccccccccccccC--CCCccccC-------
Q 016470           76 VYPQAVEHIDDEGRNILHVAIKYR--QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKR--SDYVPEKM-------  144 (389)
Q Consensus        76 ~~~~~~~~~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~--~~~~~~~l-------  144 (389)
                      +.|++++.+|..|+||||+|+..+  +.+++++|+++|++    ++.+|..|+||||+|+...  +..+++.+       
T Consensus       140 ~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~----~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~  215 (471)
T PHA03095        140 RKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGAD----VYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDP  215 (471)
T ss_pred             HcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCC
Confidence            789999999999999999998876  57899999999988    7777889999999887642  22333222       


Q ss_pred             ------CCchhhhhHHhhHH--HHHH-hhccchhhhhcccCCCChHHHHHhhh
Q 016470          145 ------EGPALVLQEELLWY--ERVE-EVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       145 ------~~~~~~l~~~l~~~--~~v~-~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                            ...++.........  ..++ -.......+.+|.+|.||++++...+
T Consensus       216 ~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~  268 (471)
T PHA03095        216 AATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFN  268 (471)
T ss_pred             cccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence                  11122211111000  0111 11233446788999999999998754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=6.4e-21  Score=179.87  Aligned_cols=136  Identities=21%  Similarity=0.218  Sum_probs=119.6

Q ss_pred             HHHHHHHh-CCCCCccc-----cccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHH
Q 016470            2 ELARFLIR-RDTSWEIT-----DSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 eiv~~Ll~-~ga~vn~~-----~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      ++|++|++ .+++++..     |.+.-+|.|||..|+..|+++   .|+++|+++|.......|||-.||..|+.|++++
T Consensus        56 ~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKy  135 (615)
T KOG0508|consen   56 DVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKY  135 (615)
T ss_pred             HHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHH
Confidence            68899998 57776643     223345788888888888887   8999999999998889999999999999999999


Q ss_pred             HHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccc
Q 016470           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE  142 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~  142 (389)
                      |+ +++++++..|..|.|+||+|+..||.+|+++|++.|+|    +|.++..|||+||.++..|+.++++
T Consensus       136 Lv-E~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD----vn~ks~kGNTALH~caEsG~vdivq  200 (615)
T KOG0508|consen  136 LV-EHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD----VNAKSYKGNTALHDCAESGSVDIVQ  200 (615)
T ss_pred             HH-HcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC----cchhcccCchHHHhhhhcccHHHHH
Confidence            99 88999999999999999999999999999999999999    9999999999999999999888773

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.82  E-value=2e-20  Score=196.61  Aligned_cols=178  Identities=15%  Similarity=0.080  Sum_probs=114.2

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCC-ch---hhhhcCCCCCCCcCCCCCHHHHHHHcC-CHHHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPN-AS---SVDQKGIGESSAIDNAETPLFLATKSG-CIEIVKEIFNV   76 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~-~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g-~~~~v~~Ll~~   76 (389)
                      +++++|+++|+++|..|   ..|.||||.|+..|. .+   .|++.|++++.+|..|.||||+|+..+ +.++++.|+ .
T Consensus       288 ~iv~lLl~~gadin~~d---~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl-~  363 (682)
T PHA02876        288 RLVPKLLERGADVNAKN---IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLL-E  363 (682)
T ss_pred             HHHHHHHHCCCCCCCcC---CCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHH-H
Confidence            46778888888887776   456677888877763 22   677777777777777777777777653 566666666 6


Q ss_pred             CCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCC-ccccC-----------
Q 016470           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDY-VPEKM-----------  144 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~-~~~~l-----------  144 (389)
                      .|++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|.||||+|+..++.. +++.+           
T Consensus       364 ~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad----~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d  439 (682)
T PHA02876        364 LGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD----IEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKN  439 (682)
T ss_pred             cCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCC
Confidence            7777777777777777777777777777777777777    6777777777777776543321 11111           


Q ss_pred             --CCchhhhhHHhhH-HHHHHh-hccchhhhhcccCCCChHHHHHhh
Q 016470          145 --EGPALVLQEELLW-YERVEE-VSMPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       145 --~~~~~~l~~~l~~-~~~v~~-~~~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                        ..+++........ .+-++- +..+...+.+|.+|.||++++.+.
T Consensus       440 ~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~a~~~  486 (682)
T PHA02876        440 KDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY  486 (682)
T ss_pred             CCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHh
Confidence              1122222211110 111111 123344678899999999987653

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.82  E-value=2.6e-20  Score=198.88  Aligned_cols=157  Identities=15%  Similarity=0.164  Sum_probs=131.9

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.|+++|+|+|..|   ..|.||||.|+..|+.+   .|+++|+|+|.+|.+|.||||.|+..|+.++++.|+ +.+
T Consensus       539 ~~l~~Ll~~G~d~n~~d---~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~-~~~  614 (823)
T PLN03192        539 ALLEELLKAKLDPDIGD---SKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILY-HFA  614 (823)
T ss_pred             HHHHHHHHCCCCCCCCC---CCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHH-hcC
Confidence            67899999999999888   66778899999999877   889999999999999999999999999999999998 555


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHH
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~  158 (389)
                      +..+  +..|.++||.|+.+|+.++++.|+++|++    +|.+|.+|+||||+|+..|+.++++.+..            
T Consensus       615 ~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad----in~~d~~G~TpLh~A~~~g~~~iv~~Ll~------------  676 (823)
T PLN03192        615 SISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLN----VDSEDHQGATALQVAMAEDHVDMVRLLIM------------  676 (823)
T ss_pred             cccC--cccCchHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHCCcHHHHHHHHH------------
Confidence            5433  35678999999999999999999999999    99999999999999999998777633221            


Q ss_pred             HHHHhhccchhhhhcccCC-CChHHHHHhh
Q 016470          159 ERVEEVSMPHFRNHRNNMG-FTPEELFATA  187 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g-~tp~~l~~~~  187 (389)
                             .....+..|.+| .||.++....
T Consensus       677 -------~GAdv~~~~~~g~~t~~~l~~~~  699 (823)
T PLN03192        677 -------NGADVDKANTDDDFSPTELRELL  699 (823)
T ss_pred             -------cCCCCCCCCCCCCCCHHHHHHHH
Confidence                   112246677777 8998876543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.81  E-value=3.6e-20  Score=184.89  Aligned_cols=184  Identities=18%  Similarity=0.238  Sum_probs=134.0

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC-
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY-   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-   77 (389)
                      ++.++|+++|+|+|..|   +.+.||||.|+..+..|   .|++.|+|+...|.+|.+|+|.|+++|..|+.+..+.++ 
T Consensus       135 s~L~~Ll~~~~dvnl~d---e~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g  211 (929)
T KOG0510|consen  135 SCLKLLLDYGADVNLED---ENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHG  211 (929)
T ss_pred             HHHHHHHHhcCCccccc---cCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhcccc
Confidence            56788888888888777   66777888888888777   678888888888888888888888888888888888533 


Q ss_pred             ---CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCc-----------ccccccccccccccccccccccCCCCcccc
Q 016470           78 ---PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVP-----------MRRLVRKIDNGGNTLLHMTGIKRSDYVPEK  143 (389)
Q Consensus        78 ---~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~-----------~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~  143 (389)
                         ...+|.-|+.|.||||.|++.|+.++++..++.|..           .+.++|.+|++|.||||+|++.|+.+.++.
T Consensus       212 ~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~  291 (929)
T KOG0510|consen  212 YERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDN  291 (929)
T ss_pred             chhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHH
Confidence               345777788888888888888888888888876543           134678889999999999999988887765


Q ss_pred             CCCc-------------hhhhhHHhhHHHHHHhhcc---chhhhhcccCCCChHHHHHhhh
Q 016470          144 MEGP-------------ALVLQEELLWYERVEEVSM---PHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       144 l~~~-------------~~~l~~~l~~~~~v~~~~~---~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      +.+.             .+......+....++++..   ....+..|-.|.||+|++.+.+
T Consensus       292 Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~g  352 (929)
T KOG0510|consen  292 LLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSG  352 (929)
T ss_pred             HHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcC
Confidence            5321             2223333333333443332   2335667778888888887654

>PHA02795 ankyrin-like protein; Provisional

Probab=99.81  E-value=3.7e-20  Score=179.84  Aligned_cols=158  Identities=13%  Similarity=0.029  Sum_probs=130.9

Q ss_pred             HHHHHHHhCCCCCc------cccccccCCchhhhhhhc--CCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHH
Q 016470            2 ELARFLIRRDTSWE------ITDSIQDQSKPKIHRYGA--NPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIV   70 (389)
Q Consensus         2 eiv~~Ll~~ga~vn------~~~~~~~~~~~~Lh~a~~--~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v   70 (389)
                      |++++|+.+|+++|      .++   +...++||.++.  .|+.+   +|+++|||++.+  ++.||+|.|+..|+.+++
T Consensus        91 ~~~~~l~s~~~~~~~~~~~~~~~---~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIV  165 (437)
T PHA02795         91 DIISALVSKNYMEDIFSIIIKNC---NSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVV  165 (437)
T ss_pred             HHHHHHHhcccccchhhhhhhcc---ccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHH
Confidence            78999999999988      544   557788999888  66665   899999999885  458999999999999999


Q ss_pred             HHHHHHCCCcc-ccc-----CCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccC
Q 016470           71 KEIFNVYPQAV-EHI-----DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus        71 ~~Ll~~~~~~~-~~~-----d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l  144 (389)
                      ++|+ ++|++. +..     +..|.+++|.|+.+++.+++++|+++|++    +|.+|.+|+||||+|+..++.++++.+
T Consensus       166 k~Ll-s~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD----IN~kD~~G~TpLh~Aa~~g~~eiVelL  240 (437)
T PHA02795        166 EFIL-NCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED----INQLDAGGRTLLYRAIYAGYIDLVSWL  240 (437)
T ss_pred             HHHH-hcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC----cCcCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999 777643 222     23588999999999999999999999999    999999999999999999987776322


Q ss_pred             CCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          145 EGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       145 ~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      ..                   .+...+.+|.+|.||++.+...+
T Consensus       241 L~-------------------~GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        241 LE-------------------NGANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             HH-------------------CCCCCCCcCCCCCCHHHHHHHcC
Confidence            11                   22336788999999999998765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.7e-19  Score=189.69  Aligned_cols=179  Identities=21%  Similarity=0.208  Sum_probs=143.8

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch----hhhhcCCCCCCCcCCCCCHHHHHHHcC-CHHHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS----SVDQKGIGESSAIDNAETPLFLATKSG-CIEIVKEIFNV   76 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~----~Ll~~ga~~n~~d~~G~tpLh~Aa~~g-~~~~v~~Ll~~   76 (389)
                      +++++|++.|+++|..+   ..|.||||+|+..++.+    +|+++|++++.+|.+|+||||+|+..| +.+.++.|+ .
T Consensus       254 ~~~~~Ll~~g~~vn~~d---~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll-~  329 (682)
T PHA02876        254 ETSLLLYDAGFSVNSID---DCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLI-M  329 (682)
T ss_pred             HHHHHHHHCCCCCCCCC---CCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHH-H
Confidence            67899999999998877   56778899999988753    789999999999999999999999999 589999998 8


Q ss_pred             CCCcccccCCCCCcHHHHHHHc-CChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCC---------
Q 016470           77 YPQAVEHIDDEGRNILHVAIKY-RQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG---------  146 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~-g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~---------  146 (389)
                      .|++++.+|..|+||||+|+.. ++.++++.|++.|++    +|.+|..|+||||+|+..++.++++.+..         
T Consensus       330 ~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad----in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~  405 (682)
T PHA02876        330 LGADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN----VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALS  405 (682)
T ss_pred             cCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC----CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccC
Confidence            8999999999999999999986 468899999999999    99999999999999999988877655422         


Q ss_pred             ----chhhhhHHh-hHHHHHHh-hccchhhhhcccCCCChHHHHHhhh
Q 016470          147 ----PALVLQEEL-LWYERVEE-VSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       147 ----~~~~l~~~l-~~~~~v~~-~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                          .++...... .....++. +..+...+.+|.+|+||++++.+.+
T Consensus       406 ~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~  453 (682)
T PHA02876        406 QKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKN  453 (682)
T ss_pred             CCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhC
Confidence                111111100 00111211 1233456789999999999998754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.80  E-value=1.5e-19  Score=170.72  Aligned_cols=136  Identities=18%  Similarity=0.270  Sum_probs=125.3

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +|+||.|+++|++||...   ..+.|||--||..|+.+   .|+++|+|++..|..|.|.||+||.+||.+++++|+ +.
T Consensus        97 l~vVk~L~~~ga~VN~tT---~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLl-e~  172 (615)
T KOG0508|consen   97 LEVVKLLLRRGASVNDTT---RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLL-EQ  172 (615)
T ss_pred             HHHHHHHHHhcCcccccc---ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHH-Hh
Confidence            489999999999998766   55567799999999988   899999999999999999999999999999999999 88


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCC
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKME  145 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~  145 (389)
                      |+++|.++..|+|+||.|++.|+.+++++|+++|+.    + .+|..|-|||..|+..|+..+++.+.
T Consensus       173 gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~----i-~~d~~GmtPL~~Aa~tG~~~iVe~L~  235 (615)
T KOG0508|consen  173 GADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAK----I-DVDGHGMTPLLLAAVTGHTDIVERLL  235 (615)
T ss_pred             CCCcchhcccCchHHHhhhhcccHHHHHHHHhCCce----e-eecCCCCchHHHHhhhcchHHHHHHh
Confidence            999999999999999999999999999999999986    3 56888999999999999998887664

>PHA02795 ankyrin-like protein; Provisional

Probab=99.80  E-value=1.7e-19  Score=175.22  Aligned_cols=127  Identities=18%  Similarity=0.230  Sum_probs=113.2

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCc------CCCCCHHHHHHHcCCHHHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAI------DNAETPLFLATKSGCIEIVK   71 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d------~~G~tpLh~Aa~~g~~~~v~   71 (389)
                      +|+|++|+++|||++..+     +.+|+|.|+..++.+   +|+++|++.+...      ..|.|++|.|+..++.++++
T Consensus       131 ~eiV~~LI~~GADIn~~~-----~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve  205 (437)
T PHA02795        131 IDIVDFMVDHGAVIYKIE-----CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYK  205 (437)
T ss_pred             HHHHHHHHHCCCCCCCCC-----CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHH
Confidence            489999999999998754     256799999888766   8999998543222      34889999999999999999


Q ss_pred             HHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCC
Q 016470           72 EIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        72 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~  137 (389)
                      .|+ .+|++++.+|..|+||||+|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+..|+
T Consensus       206 ~LI-s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAd----IN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        206 LCI-PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGAN----VNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             HHH-hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCC
Confidence            999 89999999999999999999999999999999999999    99999999999999999885

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.78  E-value=3.1e-19  Score=178.31  Aligned_cols=138  Identities=17%  Similarity=0.125  Sum_probs=123.2

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +.++.|++.|++++.++   ....+|+|.|+..++.+   .|+++|+|+|..|+.|.||||.||..++.|..++|+ +.+
T Consensus       102 ~~i~~Lls~gad~~~~n---~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~A~~~~~~E~~k~Li-~~~  177 (929)
T KOG0510|consen  102 DKIQVLLSYGADTPLRN---LNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHLAARKNKVEAKKELI-NKG  177 (929)
T ss_pred             HHHHHHHhcCCCCChhh---hhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhHHHhcChHHHHHHHH-hcC
Confidence            67999999999999988   44556799999999877   899999999999999999999999999999778888 889


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHh-cCCcccccccccccccccccccccccCCCCcccc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEK  143 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~  143 (389)
                      +++...|.+|+.|+|.|+++|..|+.+..+. +|......+|.-|.+|.||||+|+..|+.+..+.
T Consensus       178 a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~  243 (929)
T KOG0510|consen  178 ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKM  243 (929)
T ss_pred             CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHH
Confidence            9999999999999999999999999999987 3333333489999999999999999999887744

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.78  E-value=1.2e-19  Score=156.99  Aligned_cols=124  Identities=12%  Similarity=0.108  Sum_probs=105.5

Q ss_pred             CCCCCccccccccCCchhhhhhhcCCCch-------hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHH---HHHHHHHCCC
Q 016470           10 RDTSWEITDSIQDQSKPKIHRYGANPNAS-------SVDQKGIGESSAIDNAETPLFLATKSGCIEI---VKEIFNVYPQ   79 (389)
Q Consensus        10 ~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~-------~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~---v~~Ll~~~~~   79 (389)
                      +|++++..+   +.+.+.+|+|+..|+.+       .|.++|++++.+|.+|+||||+|+..|+.+.   +++|+ ..|+
T Consensus         9 ~~~~~~~~~---~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll-~~Ga   84 (166)
T PHA02743          9 NNLGAVEID---EDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLV-NMGA   84 (166)
T ss_pred             cchHHhhhc---cCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHH-HcCC
Confidence            456655555   33344599999999874       4668899999999999999999999998654   78888 8899


Q ss_pred             cccccC-CCCCcHHHHHHHcCChhhHHHHHh-cCCcccccccccccccccccccccccCCCCcc
Q 016470           80 AVEHID-DEGRNILHVAIKYRQLEIFELVIQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        80 ~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      +++.+| ..|+||||+|+.+|+.+++++|++ .|++    ++.+|.+|+||||+|+..++.+++
T Consensus        85 din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad----~~~~d~~g~tpL~~A~~~~~~~iv  144 (166)
T PHA02743         85 DINARELGTGNTLLHIAASTKNYELAEWLCRQLGVN----LGAINYQHETAYHIAYKMRDRRMM  144 (166)
T ss_pred             CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC----ccCcCCCCCCHHHHHHHcCCHHHH
Confidence            999998 589999999999999999999995 7988    899999999999999998876665

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.77  E-value=1.5e-18  Score=150.12  Aligned_cols=119  Identities=14%  Similarity=0.116  Sum_probs=106.4

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCC------chhhhhcCCCCCCCc-CCCCCHHHHHHHcCCHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPN------ASSVDQKGIGESSAI-DNAETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~------~~~Ll~~ga~~n~~d-~~G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      +++++|+++|++++..|   +.+.||||+|+..|.      +++|+++|+++|.+| ..|.||||+|+..|+.+++++|+
T Consensus        38 ~~~~~l~~~g~~~~~~d---~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll  114 (166)
T PHA02743         38 EVAPFISGDGHLLHRYD---HHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLC  114 (166)
T ss_pred             HHHHHHhhcchhhhccC---CCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Confidence            56778889999988777   567788999998875      348999999999998 58999999999999999999999


Q ss_pred             HHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccccc
Q 016470           75 NVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNT  127 (389)
Q Consensus        75 ~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~T  127 (389)
                      +..+++++.+|..|+||||+|+..++.+++++|+++|++    ++.++..|..
T Consensus       115 ~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~----~~~~~~~~~~  163 (166)
T PHA02743        115 RQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAV----CDDPLSIGLS  163 (166)
T ss_pred             hccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcccCCcc
Confidence            558999999999999999999999999999999999999    8888887753

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.77  E-value=1.2e-18  Score=144.66  Aligned_cols=151  Identities=19%  Similarity=0.182  Sum_probs=117.8

Q ss_pred             hhhhhcCCCch---hhhhcCC-CCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhh
Q 016470           28 IHRYGANPNAS---SVDQKGI-GESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEI  103 (389)
Q Consensus        28 Lh~a~~~~~~~---~Ll~~ga-~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~i  103 (389)
                      +.+|+..+.+.   .|++..+ -+|.+|.+|+||||-|+.+|+.++|+.|+ ..|++.+.+...||||||-||+.++.++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll-~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELL-LSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHH-HccCCcccccccCccchhhhhcccchhH
Confidence            44677777655   4555544 47999999999999999999999999999 8999999999999999999999999999


Q ss_pred             HHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHH
Q 016470          104 FELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEEL  183 (389)
Q Consensus       104 v~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l  183 (389)
                      +..|+++|++    +|++.+...||||+|+...+....     ..+.+            ..+...+..+|+.+.||.++
T Consensus       146 a~~LLqhgaD----VnA~t~g~ltpLhlaa~~rn~r~t-----~~~Ll------------~dryi~pg~~nn~eeta~~i  204 (228)
T KOG0512|consen  146 AGRLLQHGAD----VNAQTKGLLTPLHLAAGNRNSRDT-----LELLL------------HDRYIHPGLKNNLEETAFDI  204 (228)
T ss_pred             HHHHHhccCc----ccccccccchhhHHhhcccchHHH-----HHHHh------------hccccChhhhcCccchHHHH
Confidence            9999999999    999999999999999987643322     00111            11122245678899999999


Q ss_pred             HHhh--hhhHHHhHHHHHH
Q 016470          184 FATA--NNELRAQSKEWLI  200 (389)
Q Consensus       184 ~~~~--~~~l~~~~~e~~~  200 (389)
                      +.+.  ...+.+.+++.+.
T Consensus       205 ARRT~~s~~lfe~~e~~~~  223 (228)
T KOG0512|consen  205 ARRTSMSHYLFEIVEGCMN  223 (228)
T ss_pred             HHHhhhhHHHHHHHHHHhh
Confidence            9876  3344444444443

>PHA02917 ankyrin-like protein; Provisional

Probab=99.77  E-value=6.4e-19  Score=182.44  Aligned_cols=119  Identities=12%  Similarity=0.097  Sum_probs=71.8

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcC---CCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHH----HHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGAN---PNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIE----IVK   71 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~---~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~----~v~   71 (389)
                      |.++.|+.+|..++.+|   ..|.+|||.|+..   |+.+   +|+++|++++.+|..|.||||.|+..|+.+    +++
T Consensus        13 ~~~~~l~~~~~~~~~~d---~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~   89 (661)
T PHA02917         13 DELKQMLRDRDPNDTRN---QFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAM   89 (661)
T ss_pred             HHHHHHHhccCcccccC---CCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHH
Confidence            56777777887776656   4556778876444   5555   788888888888888899988888777633    334


Q ss_pred             HHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccc
Q 016470           72 EIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH  130 (389)
Q Consensus        72 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLh  130 (389)
                      .|++..+. .+..|  ..+++|.|+.+++.+++++|+++|++    +|.+|.+|+||||
T Consensus        90 ~Ll~~~~~-~n~~~--~~~~~~~a~~~~~~e~vk~Ll~~Gad----in~~d~~g~T~L~  141 (661)
T PHA02917         90 ALLEATGY-SNIND--FNIFSYMKSKNVDVDLIKVLVEHGFD----LSVKCENHRSVIE  141 (661)
T ss_pred             HHHhccCC-CCCCC--cchHHHHHhhcCCHHHHHHHHHcCCC----CCccCCCCccHHH
Confidence            44422221 22211  12344445555555555555555555    5555555555555

>PHA02741 hypothetical protein; Provisional

Probab=99.76  E-value=7.3e-19  Score=152.63  Aligned_cols=115  Identities=10%  Similarity=0.103  Sum_probs=101.7

Q ss_pred             cCCchhhhhhhcCCCch---hhh------hcCCCCCCCcCCCCCHHHHHHHcCC----HHHHHHHHHHCCCcccccCC-C
Q 016470           22 DQSKPKIHRYGANPNAS---SVD------QKGIGESSAIDNAETPLFLATKSGC----IEIVKEIFNVYPQAVEHIDD-E   87 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll------~~ga~~n~~d~~G~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~-~   87 (389)
                      ..+.++||.|+..|+.+   .|+      ..|++++.+|..|.||||+|+..|+    .++++.|+ .+|++++.+|. +
T Consensus        19 ~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll-~~gadin~~~~~~   97 (169)
T PHA02741         19 SEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLI-ELGADINAQEMLE   97 (169)
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHH-HcCCCCCCCCcCC
Confidence            45667899999999988   332      3478999999999999999999999    58889998 78999999985 9


Q ss_pred             CCcHHHHHHHcCChhhHHHHHh-cCCcccccccccccccccccccccccCCCCcc
Q 016470           88 GRNILHVAIKYRQLEIFELVIQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        88 G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |+||||+|+.+++.+++++|++ .|++    ++.+|.+|.||||+|+..++.+++
T Consensus        98 g~TpLh~A~~~~~~~iv~~Ll~~~g~~----~~~~n~~g~tpL~~A~~~~~~~iv  148 (169)
T PHA02741         98 GDTALHLAAHRRDHDLAEWLCCQPGID----LHFCNADNKSPFELAIDNEDVAMM  148 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCC----CCcCCCCCCCHHHHHHHCCCHHHH
Confidence            9999999999999999999997 5888    899999999999999998876655

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.76  E-value=1.6e-18  Score=162.20  Aligned_cols=116  Identities=10%  Similarity=0.105  Sum_probs=104.2

Q ss_pred             ccCCchhhhhhhcCCCch---hhhhcCCCCCCCc----CCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccC-CCCCcHH
Q 016470           21 QDQSKPKIHRYGANPNAS---SVDQKGIGESSAI----DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID-DEGRNIL   92 (389)
Q Consensus        21 ~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d----~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~L   92 (389)
                      .++.+++||.|+..++.+   .|+++|+|+|.+|    ..|.||||+|+..|+.+++++|+ ++|++++.++ ..|.|||
T Consensus        30 ~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL-~~GADVN~~~~~~g~TpL  108 (300)
T PHA02884         30 KICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLI-RYGADVNRYAEEAKITPL  108 (300)
T ss_pred             cCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCcCcccCCCCCCHH
Confidence            466778888888888766   8999999999874    58999999999999999999999 8999999864 6899999


Q ss_pred             HHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           93 HVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |.|+.+|+.+++++|+++|++    ++.+|.+|.||||+|++.++..+.
T Consensus       109 h~Aa~~~~~eivklLL~~GAd----in~kd~~G~TpL~~A~~~~~~~~~  153 (300)
T PHA02884        109 YISVLHGCLKCLEILLSYGAD----INIQTNDMVTPIELALMICNNFLA  153 (300)
T ss_pred             HHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHhCChhHH
Confidence            999999999999999999999    999999999999999987665544

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.76  E-value=2e-18  Score=182.03  Aligned_cols=164  Identities=19%  Similarity=0.196  Sum_probs=129.2

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.|++.++..+...   +.+.+++|.+...+...   .++++|++++.++.+|+||||.|+.+|+.++|++|+ ++|
T Consensus       488 ~~~~llle~~~~~~~~~---~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLL-e~g  563 (1143)
T KOG4177|consen  488 EVVQLLLEGGANDNLDA---KKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLL-EHG  563 (1143)
T ss_pred             hHHHHhhhcCCccCccc---hhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhh-hCC
Confidence            45556666655444433   44555666666666554   678899999999999999999999999999999999 999


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHH
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~  158 (389)
                      ++++.+|+.|+||||.|+..|+.+++++|+++|++    +|..|.+|.||||+|+..++..+++.+......        
T Consensus       564 Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~----vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~--------  631 (1143)
T KOG4177|consen  564 ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS----VNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT--------  631 (1143)
T ss_pred             ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC----CCcccccCcchhHHHHHhcccchhhHHHhccCc--------
Confidence            99999999999999999999999999999999999    999999999999999999998877433211100        


Q ss_pred             HHHHhhccchhhhhcccCCCChHHHHHhh
Q 016470          159 ERVEEVSMPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                            .........|..|.+|.++.++.
T Consensus       632 ------~~~~~~~~e~~~g~~p~~v~e~~  654 (1143)
T KOG4177|consen  632 ------PAATDPVKENRKGAVPEDVAEEL  654 (1143)
T ss_pred             ------cccccchhhhhcccChhhHHHHh
Confidence                  01111345677888888876654

>PHA02917 ankyrin-like protein; Provisional

Probab=99.75  E-value=2.3e-18  Score=178.40  Aligned_cols=135  Identities=16%  Similarity=0.148  Sum_probs=112.1

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCC-----------------------------------ch---hhhhc
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPN-----------------------------------AS---SVDQK   43 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~-----------------------------------~~---~Ll~~   43 (389)
                      |++++|+++|++++..+   +.|.||||.|+..|+                                   .+   +|+++
T Consensus        49 ~~v~~Ll~~ga~v~~~~---~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~  125 (661)
T PHA02917         49 EVVKLLLDSGTNPLHKN---WRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSYMKSKNVDVDLIKVLVEH  125 (661)
T ss_pred             HHHHHHHHCCCCccccC---CCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHHHHhhcCCHHHHHHHHHc
Confidence            78999999999998776   566777997765442                                   11   67889


Q ss_pred             CCCCCCCcCCCCCHHHHHH--HcCCHHHHHHHHHHCCCcccccCC---CC-----------CcHHHHHHH----------
Q 016470           44 GIGESSAIDNAETPLFLAT--KSGCIEIVKEIFNVYPQAVEHIDD---EG-----------RNILHVAIK----------   97 (389)
Q Consensus        44 ga~~n~~d~~G~tpLh~Aa--~~g~~~~v~~Ll~~~~~~~~~~d~---~G-----------~t~Lh~A~~----------   97 (389)
                      |+|+|.+|.+|+||||.|+  ..|+.+++++|+ ++|++++..|.   .|           .||||+|+.          
T Consensus       126 Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi-~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~  204 (661)
T PHA02917        126 GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFI-ENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTR  204 (661)
T ss_pred             CCCCCccCCCCccHHHHHHHccCCCHHHHHHHH-HcCCCccccccccccccccccccccccccHHHHHHhhccccccccc
Confidence            9999999999999999653  578999999999 88999986653   34           599999986          


Q ss_pred             -cCChhhHHHHHhcCCcccccccccccccccccccccccCCC--CccccC
Q 016470           98 -YRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSD--YVPEKM  144 (389)
Q Consensus        98 -~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~--~~~~~l  144 (389)
                       +++.+++++|+++|++    +|.+|.+|+||||+|++.++.  ++++.+
T Consensus       205 ~~~~~eiv~~Li~~Gad----vn~~d~~G~TpLh~A~~~g~~~~eivk~L  250 (661)
T PHA02917        205 AYVRPEVVKCLINHGIK----PSSIDKNYCTALQYYIKSSHIDIDIVKLL  250 (661)
T ss_pred             ccCcHHHHHHHHHCCCC----cccCCCCCCcHHHHHHHcCCCcHHHHHHH
Confidence             5689999999999999    999999999999999999876  355433

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.73  E-value=2e-18  Score=153.97  Aligned_cols=125  Identities=22%  Similarity=0.241  Sum_probs=105.4

Q ss_pred             hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccc
Q 016470           39 SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLV  118 (389)
Q Consensus        39 ~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~  118 (389)
                      .|-+..-|.|..|+.|.+|||+||+.|+..+++.|+ ..|+.+|..|....||||+|+.+||.++++.|+++.++    +
T Consensus        19 wld~tehdln~gddhgfsplhwaakegh~aivemll-~rgarvn~tnmgddtplhlaaahghrdivqkll~~kad----v   93 (448)
T KOG0195|consen   19 WLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLL-SRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD----V   93 (448)
T ss_pred             EecCcccccccccccCcchhhhhhhcccHHHHHHHH-hcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcc----c
Confidence            566777888999999999999999999999999999 88999999998889999999999999999999999888    9


Q ss_pred             cccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhh
Q 016470          119 RKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       119 ~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                      |+.|..||||||+||..|...+.|-+..                   .....+.-|++|.||+|.+...
T Consensus        94 navnehgntplhyacfwgydqiaedli~-------------------~ga~v~icnk~g~tpldkakp~  143 (448)
T KOG0195|consen   94 NAVNEHGNTPLHYACFWGYDQIAEDLIS-------------------CGAAVNICNKKGMTPLDKAKPM  143 (448)
T ss_pred             chhhccCCCchhhhhhhcHHHHHHHHHh-------------------ccceeeecccCCCCchhhhchH
Confidence            9999999999999999987766632221                   2223578899999999876543

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.73  E-value=4.2e-18  Score=163.73  Aligned_cols=158  Identities=22%  Similarity=0.220  Sum_probs=131.1

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +=++.|+..|+++|..+   ..+.|+||.++...+.+   +|+++|+++|+.|.+|+||||.|+..|+..++++++ .+|
T Consensus        54 ~ev~~ll~~ga~~~~~n---~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li-~~g  129 (527)
T KOG0505|consen   54 EEVRKLLNRGASPNLCN---VDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLI-QHG  129 (527)
T ss_pred             HHHHHHhccCCCccccC---CccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHH-Hhh
Confidence            34788999999998887   56678899999988877   999999999999999999999999999999999999 444


Q ss_pred             Ccc-----------------------------------------------------------cccCCCCCcHHHHHHHcC
Q 016470           79 QAV-----------------------------------------------------------EHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        79 ~~~-----------------------------------------------------------~~~d~~G~t~Lh~A~~~g   99 (389)
                      +++                                                           +.++..|.|.||+|+.+|
T Consensus       130 A~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~G  209 (527)
T KOG0505|consen  130 ANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANG  209 (527)
T ss_pred             hhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhh
Confidence            333                                                           333445779999999999


Q ss_pred             ChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCC
Q 016470          100 QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFT  179 (389)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~t  179 (389)
                      ..++.++|++.|.+    ++.+|.+|+||||.|+..+..+..+++..                   .....+.+++.|+|
T Consensus       210 y~e~~~lLl~ag~~----~~~~D~dgWtPlHAAA~Wg~~~~~elL~~-------------------~ga~~d~~t~~g~~  266 (527)
T KOG0505|consen  210 YTEVAALLLQAGYS----VNIKDYDGWTPLHAAAHWGQEDACELLVE-------------------HGADMDAKTKMGET  266 (527)
T ss_pred             HHHHHHHHHHhccC----cccccccCCCcccHHHHhhhHhHHHHHHH-------------------hhcccchhhhcCCC
Confidence            99999999999999    99999999999999999988776632211                   11224677888999


Q ss_pred             hHHHHHh
Q 016470          180 PEELFAT  186 (389)
Q Consensus       180 p~~l~~~  186 (389)
                      |++++.+
T Consensus       267 p~dv~de  273 (527)
T KOG0505|consen  267 PLDVADE  273 (527)
T ss_pred             Cccchhh
Confidence            9988766

>PHA02730 ankyrin-like protein; Provisional

Probab=99.73  E-value=4.9e-18  Score=172.60  Aligned_cols=135  Identities=13%  Similarity=0.226  Sum_probs=112.5

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCC----ch---hhhhcCC--CCCCCcCCCCCHHHH---HHHcC---
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPN----AS---SVDQKGI--GESSAIDNAETPLFL---ATKSG---   65 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~----~~---~Ll~~ga--~~n~~d~~G~tpLh~---Aa~~g---   65 (389)
                      +|++++|+++||++|..    +.|.||||.|+..++    .+   +|+++|+  ++|.+|.+|.||||.   |...+   
T Consensus       359 ieIvelLIs~GAdIN~k----~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~  434 (672)
T PHA02730        359 IPILRCMLDNGATMDKT----TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGY  434 (672)
T ss_pred             HHHHHHHHHCCCCCCcC----CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccc
Confidence            37999999999999963    345688998887664    34   8999997  689999999999994   33332   


Q ss_pred             ------CHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccc-cccccccccccc--C
Q 016470           66 ------CIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDN-GGNTLLHMTGIK--R  136 (389)
Q Consensus        66 ------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~-~G~TpLhlA~~~--~  136 (389)
                            ..+++++|+ .+|++++.+|..|+||||+|+..++.+++++|+++|++    +|.+|. .|+||||.|+..  +
T Consensus       435 ~~~e~~~~~ivk~LI-s~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAd----IN~~d~~~g~TaL~~Aa~~~~~  509 (672)
T PHA02730        435 HCYETILIDVFDILS-KYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS----VNTTSRSIINTAIQKSSYRREN  509 (672)
T ss_pred             cccchhHHHHHHHHH-hcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCcCCcCHHHHHHHhhcC
Confidence                  235689999 89999999999999999999999999999999999999    999997 599999999874  4


Q ss_pred             CCCccccC
Q 016470          137 SDYVPEKM  144 (389)
Q Consensus       137 ~~~~~~~l  144 (389)
                      +.++++.+
T Consensus       510 ~~eIv~~L  517 (672)
T PHA02730        510 KTKLVDLL  517 (672)
T ss_pred             cHHHHHHH
Confidence            55565444

>PHA02741 hypothetical protein; Provisional

Probab=99.72  E-value=9.2e-18  Score=145.73  Aligned_cols=121  Identities=20%  Similarity=0.281  Sum_probs=100.4

Q ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHHH-----CCCcccccCCCCCcHHHHHHHcCC----hhhHHHHHhcCCccccc
Q 016470           47 ESSAIDNAETPLFLATKSGCIEIVKEIFNV-----YPQAVEHIDDEGRNILHVAIKYRQ----LEIFELVIQMEVPMRRL  117 (389)
Q Consensus        47 ~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~-----~~~~~~~~d~~G~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~l  117 (389)
                      ++.+|..|.||||+|++.|+.++++.|+..     .+++++.+|..|+||||+|+.+|+    .+++++|+++|++    
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad----   89 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD----   89 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC----
Confidence            467889999999999999999999998642     367899999999999999999999    5899999999999    


Q ss_pred             cccccc-ccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhhh
Q 016470          118 VRKIDN-GGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       118 ~~~~d~-~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                      +|.+|. +|+||||+|+..++.++++.+..                  .+....+.+|.+|.||++++...+.
T Consensus        90 in~~~~~~g~TpLh~A~~~~~~~iv~~Ll~------------------~~g~~~~~~n~~g~tpL~~A~~~~~  144 (169)
T PHA02741         90 INAQEMLEGDTALHLAAHRRDHDLAEWLCC------------------QPGIDLHFCNADNKSPFELAIDNED  144 (169)
T ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHHHh------------------CCCCCCCcCCCCCCCHHHHHHHCCC
Confidence            999985 99999999999988766622211                  0122357789999999999987654

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.72  E-value=2.2e-18  Score=147.23  Aligned_cols=115  Identities=10%  Similarity=0.059  Sum_probs=97.0

Q ss_pred             cCCchhhhhhhcCCCch-hhhhcCCC-------CCCCcCCCCCHHHHHHHcCCHH---HHHHHHHHCCCcccccC-CCCC
Q 016470           22 DQSKPKIHRYGANPNAS-SVDQKGIG-------ESSAIDNAETPLFLATKSGCIE---IVKEIFNVYPQAVEHID-DEGR   89 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~-~Ll~~ga~-------~n~~d~~G~tpLh~Aa~~g~~~---~v~~Ll~~~~~~~~~~d-~~G~   89 (389)
                      ..|.||||+|+..|+.. ++..++..       ++.+|.+|+||||+|+..|+.+   +++.|+ ..|++++.+| .+|+
T Consensus        15 ~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll-~~gadin~~~~~~g~   93 (154)
T PHA02736         15 IEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLM-EWGADINGKERVFGN   93 (154)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHH-HcCCCccccCCCCCC
Confidence            56778899999999865 43333332       2356889999999999999874   678888 8899999998 5999


Q ss_pred             cHHHHHHHcCChhhHHHHHh-cCCcccccccccccccccccccccccCCCCcc
Q 016470           90 NILHVAIKYRQLEIFELVIQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        90 t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      ||||+|+..|+.+++++|++ .|++    ++.+|..|.||||+|+..++.+++
T Consensus        94 T~Lh~A~~~~~~~i~~~Ll~~~g~d----~n~~~~~g~tpL~~A~~~~~~~i~  142 (154)
T PHA02736         94 TPLHIAVYTQNYELATWLCNQPGVN----MEILNYAFKTPYYVACERHDAKMM  142 (154)
T ss_pred             cHHHHHHHhCCHHHHHHHHhCCCCC----CccccCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999997 4888    999999999999999998876665

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.71  E-value=1.3e-17  Score=178.19  Aligned_cols=139  Identities=14%  Similarity=0.162  Sum_probs=118.1

Q ss_pred             CchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCC
Q 016470           24 SKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        24 ~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  100 (389)
                      ..++||.|+..|+.+   .|+++|+|+|.+|.+|+||||+|+.+|+.++++.|+ ++|++++.+|.+|+||||.|+..|+
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~gadin~~d~~G~TpL~~A~~~g~  603 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLL-KHACNVHIRDANGNTALWNAISAKH  603 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH-hcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            345699999999876   788999999999999999999999999999999999 7899999999999999999999999


Q ss_pred             hhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCCh
Q 016470          101 LEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTP  180 (389)
Q Consensus       101 ~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp  180 (389)
                      .+++++|++.++.    .+  +..|.++||.|+..|+.++++.+..                   ....++.+|++|.||
T Consensus       604 ~~iv~~L~~~~~~----~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~-------------------~Gadin~~d~~G~Tp  658 (823)
T PLN03192        604 HKIFRILYHFASI----SD--PHAAGDLLCTAAKRNDLTAMKELLK-------------------QGLNVDSEDHQGATA  658 (823)
T ss_pred             HHHHHHHHhcCcc----cC--cccCchHHHHHHHhCCHHHHHHHHH-------------------CCCCCCCCCCCCCCH
Confidence            9999999987754    22  4567899999999998776622211                   122367889999999


Q ss_pred             HHHHHhhh
Q 016470          181 EELFATAN  188 (389)
Q Consensus       181 ~~l~~~~~  188 (389)
                      ++++...+
T Consensus       659 Lh~A~~~g  666 (823)
T PLN03192        659 LQVAMAED  666 (823)
T ss_pred             HHHHHHCC
Confidence            99987654

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.69  E-value=2.6e-17  Score=173.61  Aligned_cols=161  Identities=20%  Similarity=0.269  Sum_probs=124.5

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCC-Cch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHH--
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANP-NAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFN--   75 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~-~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~--   75 (389)
                      ++++.++++|+++|..+   ..|.|++|.++..| ..+   .+++.|+++|..-..|.||||+|+..|+.++++.+++  
T Consensus       421 ~~v~l~l~~gA~~~~~~---~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~  497 (1143)
T KOG4177|consen  421 RVVKLLLKRGASPNAKA---KLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGG  497 (1143)
T ss_pred             ceEEEEeccCCChhhHh---hcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcC
Confidence            34566677777777766   34466677777776 333   6667777777777777777777777777776666653  


Q ss_pred             ------------------------------HCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccc
Q 016470           76 ------------------------------VYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGG  125 (389)
Q Consensus        76 ------------------------------~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G  125 (389)
                                                    .+|++++.++.+|.||||.|+.+|+.++|++|+++|++    ++.+|+.|
T Consensus       498 ~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd----v~ak~~~G  573 (1143)
T KOG4177|consen  498 ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD----VNAKDKLG  573 (1143)
T ss_pred             CccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcc----ccccCCCC
Confidence                                          35778888999999999999999999999999999999    99999999


Q ss_pred             ccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          126 NTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       126 ~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      .||||.|+..|+.++.+.+..                   .+..++..+.+|.||+.++....
T Consensus       574 ~TPLH~Aa~~G~~~i~~LLlk-------------------~GA~vna~d~~g~TpL~iA~~lg  617 (1143)
T KOG4177|consen  574 YTPLHQAAQQGHNDIAELLLK-------------------HGASVNAADLDGFTPLHIAVRLG  617 (1143)
T ss_pred             CChhhHHHHcChHHHHHHHHH-------------------cCCCCCcccccCcchhHHHHHhc
Confidence            999999999998877733321                   22336888999999999987754

>PHA02730 ankyrin-like protein; Provisional

Probab=99.68  E-value=1.1e-16  Score=162.75  Aligned_cols=136  Identities=14%  Similarity=0.121  Sum_probs=105.7

Q ss_pred             hhhhhhcCCC-c-----hhhhhcCCCCCCCcCCCCCHHHHHHHcCC----HHHHHHHHHHCCC--cccccCCCCCcHHHH
Q 016470           27 KIHRYGANPN-A-----SSVDQKGIGESSAIDNAETPLFLATKSGC----IEIVKEIFNVYPQ--AVEHIDDEGRNILHV   94 (389)
Q Consensus        27 ~Lh~a~~~~~-~-----~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~----~~~v~~Ll~~~~~--~~~~~d~~G~t~Lh~   94 (389)
                      .||.+-..++ +     ++|+++|+|+|.+ ..|.||||+|+..++    .+++++|+ ++|+  +++.+|.+|+||||.
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLI-s~Ga~~dIN~kd~~G~T~Lh~  423 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIV-ENNGHMAINHVSNNGRLCMYG  423 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHH-HcCCCccccccccCCCchHhH
Confidence            3676666553 3     2999999999985 789999999998885    89999999 6766  689999999999994


Q ss_pred             ---HHHcC---------ChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHH
Q 016470           95 ---AIKYR---------QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVE  162 (389)
Q Consensus        95 ---A~~~g---------~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~  162 (389)
                         |...+         ..+++++|+++|++    +|.+|..|+||||+|+..++.++++.+.                 
T Consensus       424 ~i~a~~~n~~~~~~e~~~~~ivk~LIs~GAD----INakD~~G~TPLh~Aa~~~~~eive~LI-----------------  482 (672)
T PHA02730        424 LILSRFNNCGYHCYETILIDVFDILSKYMDD----IDMIDNENKTLLYYAVDVNNIQFARRLL-----------------  482 (672)
T ss_pred             HHHHHhccccccccchhHHHHHHHHHhcccc----hhccCCCCCCHHHHHHHhCCHHHHHHHH-----------------
Confidence               33332         22569999999999    9999999999999999987766552221                 


Q ss_pred             hhccchhhhhccc-CCCChHHHHHhh
Q 016470          163 EVSMPHFRNHRNN-MGFTPEELFATA  187 (389)
Q Consensus       163 ~~~~~~~~~~~n~-~g~tp~~l~~~~  187 (389)
                        ..+...+.+++ .|.||++.+...
T Consensus       483 --~~GAdIN~~d~~~g~TaL~~Aa~~  506 (672)
T PHA02730        483 --EYGASVNTTSRSIINTAIQKSSYR  506 (672)
T ss_pred             --HCCCCCCCCCCcCCcCHHHHHHHh
Confidence              12223567776 599999988753

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.68  E-value=3.3e-17  Score=141.02  Aligned_cols=162  Identities=14%  Similarity=0.047  Sum_probs=119.4

Q ss_pred             HHhCCCCCccccccccCCchhhhhhhcCCCch-hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccC
Q 016470            7 LIRRDTSWEITDSIQDQSKPKIHRYGANPNAS-SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID   85 (389)
Q Consensus         7 Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~-~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d   85 (389)
                      ++.+|+..|..+   -.+.+|+..+..+.+.+ .++.....+|..|+.|.|||.+|+.+|+.++|++|+ ..|++++..-
T Consensus       115 tltN~~rgnevs---~~p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL-~~GAdp~~lg  190 (296)
T KOG0502|consen  115 TLTNGARGNEVS---LMPWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLL-NSGADPDALG  190 (296)
T ss_pred             eecccccCCccc---cccCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHH-HcCCChhhhh
Confidence            344444444333   22333344444444444 222234667889999999999999999999999999 8899999999


Q ss_pred             CCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhc
Q 016470           86 DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVS  165 (389)
Q Consensus        86 ~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~  165 (389)
                      +...++|.+|+..|..+|+++|+.++.+    +|.-|.+|-|||-+|++.++.+++|.+..                   
T Consensus       191 k~resALsLAt~ggytdiV~lLL~r~vd----VNvyDwNGgTpLlyAvrgnhvkcve~Ll~-------------------  247 (296)
T KOG0502|consen  191 KYRESALSLATRGGYTDIVELLLTREVD----VNVYDWNGGTPLLYAVRGNHVKCVESLLN-------------------  247 (296)
T ss_pred             hhhhhhHhHHhcCChHHHHHHHHhcCCC----cceeccCCCceeeeeecCChHHHHHHHHh-------------------
Confidence            9999999999999999999999999988    99999999999999999988877733321                   


Q ss_pred             cchhhhhcccCCCChHHHHHhhhhhHHHhH
Q 016470          166 MPHFRNHRNNMGFTPEELFATANNELRAQS  195 (389)
Q Consensus       166 ~~~~~~~~n~~g~tp~~l~~~~~~~l~~~~  195 (389)
                      ...+.+..+..|.++.+++...+....++.
T Consensus       248 sGAd~t~e~dsGy~~mdlAValGyr~Vqqv  277 (296)
T KOG0502|consen  248 SGADVTQEDDSGYWIMDLAVALGYRIVQQV  277 (296)
T ss_pred             cCCCcccccccCCcHHHHHHHhhhHHHHHH
Confidence            223356677889999998877665554443

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.68  E-value=2.4e-16  Score=147.52  Aligned_cols=121  Identities=10%  Similarity=0.126  Sum_probs=103.9

Q ss_pred             HHHHHHHhCCCCCccccc-cccCCchhhhhhhcCCCch---hhhhcCCCCCCCc-CCCCCHHHHHHHcCCHHHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDS-IQDQSKPKIHRYGANPNAS---SVDQKGIGESSAI-DNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~-~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |++++|+++|+++|.++. .+..+.||||.|+..++.+   .|+++|+|+|.++ ..|.||||.|+..|+.++++.|+ .
T Consensus        47 eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL-~  125 (300)
T PHA02884         47 DIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILL-S  125 (300)
T ss_pred             HHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHH-H
Confidence            789999999999998753 1245678899999999877   8999999999864 57999999999999999999999 8


Q ss_pred             CCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccc
Q 016470           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMT  132 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA  132 (389)
                      +|++++.+|.+|+||||+|++.++.+++..+.  |       +..|..+.+|++++
T Consensus       126 ~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~  172 (300)
T PHA02884        126 YGADINIQTNDMVTPIELALMICNNFLAFMIC--D-------NEISNFYKHPKKIL  172 (300)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc--C-------CcccccccChhhhh
Confidence            89999999999999999999999988876554  2       12567788898875

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.67  E-value=4.6e-17  Score=172.76  Aligned_cols=126  Identities=22%  Similarity=0.191  Sum_probs=87.3

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccC--------------CCCCcHHHHHHHcCChhhHHHHHhcCCccccc
Q 016470           52 DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID--------------DEGRNILHVAIKYRQLEIFELVIQMEVPMRRL  117 (389)
Q Consensus        52 ~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l  117 (389)
                      ..|.||||+|+.+|+.++++.|+ ++|++++.++              ..|+||||.|+..|+.+++++|+++|++    
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL-~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad----  200 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLL-ERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD----  200 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHH-hCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc----
Confidence            45889999999999999999998 7788887653              2588999999999999999999999988    


Q ss_pred             ccccccccccccccccccCCCCccccCCCchhhhhHH-hhHHHH-HHhh-ccchhhhhcccCCCChHHHHHhhh
Q 016470          118 VRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEE-LLWYER-VEEV-SMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       118 ~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~-l~~~~~-v~~~-~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      +|.+|..|+||||+|+..+.....      ...+... ...... .... .+....+.+|++|.||++++.+.+
T Consensus       201 in~~d~~g~T~Lh~A~~~~~~~~~------~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g  268 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMENEFKAE------YEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG  268 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhhhhhHH------HHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC
Confidence            889999999999999876522110      0000000 000000 1111 111223678999999999987654

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.67  E-value=6.9e-17  Score=148.42  Aligned_cols=148  Identities=15%  Similarity=0.161  Sum_probs=124.7

Q ss_pred             CccccccccCCchhhhhhhcCCCch---hhhhcC-CCCCCCcCCCCCHHHHHHHc-----CCHHHHHHHHHHCCCccccc
Q 016470           14 WEITDSIQDQSKPKIHRYGANPNAS---SVDQKG-IGESSAIDNAETPLFLATKS-----GCIEIVKEIFNVYPQAVEHI   84 (389)
Q Consensus        14 vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~g-a~~n~~d~~G~tpLh~Aa~~-----g~~~~v~~Ll~~~~~~~~~~   84 (389)
                      +|..|   ..|.|+|||+...++.+   .|++.| +|+|+++..|+||+++|+-.     .+.++|+.|. ..| ++|.+
T Consensus       261 VNlaD---sNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF-~mg-nVNaK  335 (452)
T KOG0514|consen  261 VNLAD---SNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLF-KMG-DVNAK  335 (452)
T ss_pred             hhhhc---CCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHH-hcc-Ccchh
Confidence            44566   56678899999999877   788888 89999999999999998853     4678999998 665 67775


Q ss_pred             C-CCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHh
Q 016470           85 D-DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEE  163 (389)
Q Consensus        85 d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~  163 (389)
                      - ..|+|+|++|+.+|+.++++.|+..|+|    +|.+|.+|.|+|+.|+.+||.+++.++                  .
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAd----VNiQDdDGSTALMCA~EHGhkEivklL------------------L  393 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGAD----VNIQDDDGSTALMCAAEHGHKEIVKLL------------------L  393 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCC----CccccCCccHHHhhhhhhChHHHHHHH------------------h
Confidence            4 6899999999999999999999999999    999999999999999999999887222                  2


Q ss_pred             hccchhhhhcccCCCChHHHHHhhh
Q 016470          164 VSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       164 ~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      ..|.......|.||-|++.++.+.+
T Consensus       394 A~p~cd~sLtD~DgSTAl~IAleag  418 (452)
T KOG0514|consen  394 AVPSCDISLTDVDGSTALSIALEAG  418 (452)
T ss_pred             ccCcccceeecCCCchhhhhHHhcC
Confidence            2345556788999999999987764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.67  E-value=1.8e-17  Score=142.58  Aligned_cols=120  Identities=17%  Similarity=0.166  Sum_probs=112.6

Q ss_pred             CCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCC
Q 016470           11 DTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDE   87 (389)
Q Consensus        11 ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   87 (389)
                      ...+|..|   +.|.|||.+|+..|+++   +|++.|+|++...++.+++|.+|++.|..++|++|+ .++.++|.-|.+
T Consensus       150 ~n~VN~~D---e~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL-~r~vdVNvyDwN  225 (296)
T KOG0502|consen  150 NNKVNACD---EFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLL-TREVDVNVYDWN  225 (296)
T ss_pred             hccccCcc---ccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHH-hcCCCcceeccC
Confidence            45666777   77888999999999987   999999999999999999999999999999999999 888999999999


Q ss_pred             CCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCC
Q 016470           88 GRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSD  138 (389)
Q Consensus        88 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~  138 (389)
                      |-|||-+|++.+|.++++.|++.|++    ++..|..|++++.+|+..|+.
T Consensus       226 GgTpLlyAvrgnhvkcve~Ll~sGAd----~t~e~dsGy~~mdlAValGyr  272 (296)
T KOG0502|consen  226 GGTPLLYAVRGNHVKCVESLLNSGAD----VTQEDDSGYWIMDLAVALGYR  272 (296)
T ss_pred             CCceeeeeecCChHHHHHHHHhcCCC----cccccccCCcHHHHHHHhhhH
Confidence            99999999999999999999999999    999999999999999998865

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.65  E-value=1.9e-16  Score=141.42  Aligned_cols=114  Identities=22%  Similarity=0.279  Sum_probs=104.8

Q ss_pred             CCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCC
Q 016470           12 TSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEG   88 (389)
Q Consensus        12 a~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G   88 (389)
                      .|.|.-|   |-+.+|||++++.|+..   .|+++|+.+|..+....||||+|+..||.++|+.|+ ++.+++|..|..|
T Consensus        25 hdln~gd---dhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll-~~kadvnavnehg  100 (448)
T KOG0195|consen   25 HDLNVGD---DHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL-SRKADVNAVNEHG  100 (448)
T ss_pred             ccccccc---ccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH-HHhcccchhhccC
Confidence            3444444   77888999999999876   899999999999999999999999999999999999 7789999999999


Q ss_pred             CcHHHHHHHcCChhhHHHHHhcCCccccccccccccccccccccc
Q 016470           89 RNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus        89 ~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~  133 (389)
                      +||||+||..|...+.+-|+..|+.    ++.-|++|.|||..|.
T Consensus       101 ntplhyacfwgydqiaedli~~ga~----v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  101 NTPLHYACFWGYDQIAEDLISCGAA----VNICNKKGMTPLDKAK  141 (448)
T ss_pred             CCchhhhhhhcHHHHHHHHHhccce----eeecccCCCCchhhhc
Confidence            9999999999999999999999998    9999999999999875

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.63  E-value=4.6e-16  Score=129.32  Aligned_cols=127  Identities=17%  Similarity=0.159  Sum_probs=106.4

Q ss_pred             HHHHHHHhCCCC-CccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTS-WEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~-vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +.|+.||+..++ +|.+|   ..+.||||+|+.+|+.+   .|+..|++++.+...|+||||.||+-.+.+++..|+ .+
T Consensus        77 ~eV~~lL~e~an~vNtrD---~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LL-qh  152 (228)
T KOG0512|consen   77 TEVQRLLSEKANHVNTRD---EDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLL-QH  152 (228)
T ss_pred             HHHHHHHHhccccccccc---cccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHH-hc
Confidence            457777776654 66666   44557799999999987   889999999999999999999999999999999999 99


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChh-hHHHHHh-cCCcccccccccccccccccccccccC
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLE-IFELVIQ-MEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~-iv~~Ll~-~~~~~~~l~~~~d~~G~TpLhlA~~~~  136 (389)
                      |++++.+.+...||||+|+..++.. .+++|+. .+.+    ...++..+.||+.+|-+.+
T Consensus       153 gaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~----pg~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  153 GADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIH----PGLKNNLEETAFDIARRTS  209 (228)
T ss_pred             cCcccccccccchhhHHhhcccchHHHHHHHhhccccC----hhhhcCccchHHHHHHHhh
Confidence            9999999999999999999887764 4555554 4444    6778899999999987653

>PHA02792 ankyrin-like protein; Provisional

Probab=99.63  E-value=6.6e-16  Score=155.64  Aligned_cols=124  Identities=19%  Similarity=0.211  Sum_probs=107.3

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCC--CCHHHHHHHcCCHH---HHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNA--ETPLFLATKSGCIE---IVKE   72 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G--~tpLh~Aa~~g~~~---~v~~   72 (389)
                      +|++++|+++|++.+ +.    .....+|.|+..|+.+   .|+++|+|+|.+|.+|  .||||.|+..+..+   +++.
T Consensus       321 ieiIK~LId~Ga~~~-r~----~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~Ilkl  395 (631)
T PHA02792        321 INVIKCMIDEGATLY-RF----KHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKL  395 (631)
T ss_pred             HHHHHHHHHCCCccc-cC----CcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHH
Confidence            378999999999964 22    2233488888888876   8999999999998875  69999988776644   5777


Q ss_pred             HHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccc
Q 016470           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~  134 (389)
                      ++ .+|++++.+|..|+||||+|+..++.+++++|+++|++    +|.+|..|+||||+|+.
T Consensus       396 LI-s~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GAD----IN~kD~~G~TpL~~A~~  452 (631)
T PHA02792        396 CK-PYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGAD----INITTKYGSTCIGICVI  452 (631)
T ss_pred             HH-hcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHH
Confidence            78 89999999999999999999999999999999999999    99999999999999975

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.63  E-value=1.2e-15  Score=117.59  Aligned_cols=86  Identities=27%  Similarity=0.348  Sum_probs=77.3

Q ss_pred             hhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhH
Q 016470           28 IHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIF  104 (389)
Q Consensus        28 Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv  104 (389)
                      ||.|+..|+.+   .|++.+.+++.    |+||||+|+..|+.+++++|+ ++|++++.+|.+|+||||+|+.+|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLL-ENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHH-HTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHH-HhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            68899999987   78889988866    899999999999999999999 88999999999999999999999999999


Q ss_pred             HHHHhcCCcccccccccc
Q 016470          105 ELVIQMEVPMRRLVRKID  122 (389)
Q Consensus       105 ~~Ll~~~~~~~~l~~~~d  122 (389)
                      ++|+++|++    ++.+|
T Consensus        76 ~~Ll~~g~~----~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGAD----VNIRN   89 (89)
T ss_dssp             HHHHHTTT-----TTSS-
T ss_pred             HHHHHcCCC----CCCcC
Confidence            999999998    77765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.61  E-value=1e-15  Score=140.77  Aligned_cols=131  Identities=16%  Similarity=0.227  Sum_probs=109.8

Q ss_pred             HHHHHHHhCC-CCCccccccccCCchhhhhhhcCC-----Cch---hhhhcCCCCCCCcC-CCCCHHHHHHHcCCHHHHH
Q 016470            2 ELARFLIRRD-TSWEITDSIQDQSKPKIHRYGANP-----NAS---SVDQKGIGESSAID-NAETPLFLATKSGCIEIVK   71 (389)
Q Consensus         2 eiv~~Ll~~g-a~vn~~~~~~~~~~~~Lh~a~~~~-----~~~---~Ll~~ga~~n~~d~-~G~tpLh~Aa~~g~~~~v~   71 (389)
                      ++|+.||+.| .++|.++   .-|.+|++.++...     +.+   .|-+. .|+|.+-. .|.|+|++|+.+|++++|+
T Consensus       282 ~VV~~LLDSgvC~VD~qN---rAGYtpiMLaALA~lk~~~d~~vV~~LF~m-gnVNaKAsQ~gQTALMLAVSHGr~d~vk  357 (452)
T KOG0514|consen  282 DVVSILLDSGVCDVDQQN---RAGYTPVMLAALAKLKQPADRTVVERLFKM-GDVNAKASQHGQTALMLAVSHGRVDMVK  357 (452)
T ss_pred             HHHHHHhccCcccccccc---cccccHHHHHHHHhhcchhhHHHHHHHHhc-cCcchhhhhhcchhhhhhhhcCcHHHHH
Confidence            6899999998 7888877   55667777554322     111   33333 67888754 5999999999999999999


Q ss_pred             HHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhc-CCcccccccccccccccccccccccCCCCcc
Q 016470           72 EIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQM-EVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        72 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      .|| .||+++|.+|.+|.|+|++|+++||.||+++|+.. +++    +...|.+|.|+|.+|-..|+.+|.
T Consensus       358 ~LL-acgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd----~sLtD~DgSTAl~IAleagh~eIa  423 (452)
T KOG0514|consen  358 ALL-ACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD----ISLTDVDGSTALSIALEAGHREIA  423 (452)
T ss_pred             HHH-HccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc----ceeecCCCchhhhhHHhcCchHHH
Confidence            999 99999999999999999999999999999999976 455    888999999999999999998875

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.59  E-value=3.8e-15  Score=127.23  Aligned_cols=92  Identities=14%  Similarity=0.100  Sum_probs=84.1

Q ss_pred             cCCchhhhhhhcCCCc------hhhhhcCCCCCCCcC-CCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHH
Q 016470           22 DQSKPKIHRYGANPNA------SSVDQKGIGESSAID-NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHV   94 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~------~~Ll~~ga~~n~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~   94 (389)
                      +.+.|+||.|+..+..      +.|+++|+++|.+|. +|.||||+|+..|+.++++.|++..+++++.+|..|+||||+
T Consensus        53 ~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~  132 (154)
T PHA02736         53 RHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYV  132 (154)
T ss_pred             CCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHH
Confidence            5677889999998865      378999999999984 899999999999999999999955689999999999999999


Q ss_pred             HHHcCChhhHHHHHhcCCc
Q 016470           95 AIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        95 A~~~g~~~iv~~Ll~~~~~  113 (389)
                      |+..|+.+++++|+++|++
T Consensus       133 A~~~~~~~i~~~Ll~~ga~  151 (154)
T PHA02736        133 ACERHDAKMMNILRAKGAQ  151 (154)
T ss_pred             HHHcCCHHHHHHHHHcCCC
Confidence            9999999999999999986

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.56  E-value=1.8e-13  Score=145.47  Aligned_cols=122  Identities=16%  Similarity=0.182  Sum_probs=101.1

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCc--------------CCCCCHHHHHHHcCCHHHHHHHHHHCCCccccc
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAI--------------DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHI   84 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d--------------~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~   84 (389)
                      ..|.||||.|+..|+.+   .|+++|+|++.++              ..|+||||.|+..|+.+++++|+ ++|++++.+
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl-~~gadin~~  204 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLS-EDPADILTA  204 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHh-cCCcchhhH
Confidence            35778899999999987   8999999998653              35999999999999999999999 899999999


Q ss_pred             CCCCCcHHHHHHHcC---------ChhhHHHHHhcCCc---ccccccccccccccccccccccCCCCccccC
Q 016470           85 DDEGRNILHVAIKYR---------QLEIFELVIQMEVP---MRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus        85 d~~G~t~Lh~A~~~g---------~~~iv~~Ll~~~~~---~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l  144 (389)
                      |..|+||||+|+..+         ..++.+++++.++.   ...+.+.+|++|+||||+|+..++.++.+.+
T Consensus       205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lL  276 (743)
T TIGR00870       205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLK  276 (743)
T ss_pred             hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHH
Confidence            999999999999986         23456666665543   1223377899999999999999998887433

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.55  E-value=6.7e-15  Score=141.85  Aligned_cols=125  Identities=19%  Similarity=0.254  Sum_probs=109.9

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhc-----------------------------------
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQK-----------------------------------   43 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~-----------------------------------   43 (389)
                      +||++|+++|++||..|   +.+.+|+|.++..|++.   .|+++                                   
T Consensus        87 e~v~~l~e~ga~Vn~~d---~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~g  163 (527)
T KOG0505|consen   87 EMVKFLVENGANVNAQD---NEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQG  163 (527)
T ss_pred             HHHHHHHHhcCCccccc---cccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhc
Confidence            79999999999999888   56667799888888655   34443                                   


Q ss_pred             ------------------------CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcC
Q 016470           44 ------------------------GIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        44 ------------------------ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g   99 (389)
                                              |.+.+.++..|.|.||.|+.+|..++.++|+ .+|.+++.+|.+||||||.|+..|
T Consensus       164 i~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl-~ag~~~~~~D~dgWtPlHAAA~Wg  242 (527)
T KOG0505|consen  164 IDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLL-QAGYSVNIKDYDGWTPLHAAAHWG  242 (527)
T ss_pred             ccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHH-HhccCcccccccCCCcccHHHHhh
Confidence                                    4444556667999999999999999999999 889999999999999999999999


Q ss_pred             ChhhHHHHHhcCCcccccccccccccccccccccc
Q 016470          100 QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~  134 (389)
                      +.+++++|+++|++    ++.+...|.||+.+|..
T Consensus       243 ~~~~~elL~~~ga~----~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  243 QEDACELLVEHGAD----MDAKTKMGETPLDVADE  273 (527)
T ss_pred             hHhHHHHHHHhhcc----cchhhhcCCCCccchhh
Confidence            99999999999999    99999999999999875

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.55  E-value=1.5e-14  Score=117.32  Aligned_cols=115  Identities=25%  Similarity=0.378  Sum_probs=103.6

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHc
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      +.|.++||.|+..++.+   .|+++|.+.+.+|..|.||+|.|+..++.++++.|+ ..+..++..|..|.||+|.|+..
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL-EKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHHHHHc
Confidence            45668899999999876   889999999999999999999999999999999999 77778888999999999999999


Q ss_pred             CChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           99 RQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      ++.+++++|++++.+    .+..|..|.||+|+|...++.++.
T Consensus        84 ~~~~~~~~L~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~  122 (126)
T cd00204          84 GNLDVVKLLLKHGAD----VNARDKDGRTPLHLAAKNGHLEVV  122 (126)
T ss_pred             CcHHHHHHHHHcCCC----CcccCCCCCCHHHHHHhcCCHHHH
Confidence            999999999999877    888999999999999987654443

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.54  E-value=9.9e-15  Score=145.35  Aligned_cols=189  Identities=15%  Similarity=0.132  Sum_probs=142.0

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++.+-++..+   ..+..|||+|+..|+.+   .++.++..+|..+..|+||||.|+..||.+++.+|+ .++
T Consensus        63 ~is~llle~ea~ldl~d---~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll-~~~  138 (854)
T KOG0507|consen   63 QISKLLLDYEALLDLCD---TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLL-KKN  138 (854)
T ss_pred             HHHHHHhcchhhhhhhh---ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHH-hcC
Confidence            68899999998888888   56667799999999988   677778888999999999999999999999999999 889


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccc----cccccccccccccccccccCCCCccccCCCchhhhhH-
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRR----LVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQE-  153 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~----l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~-  153 (389)
                      ++.-.+|+.+.|++-.|++.|+.++++.|++.......    --..++-.+-+|||+|+++|+.++.+.+..+...... 
T Consensus       139 adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~  218 (854)
T KOG0507|consen  139 ADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYT  218 (854)
T ss_pred             CCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccc
Confidence            99999999999999999999999999999986332111    0234566788999999999999988665433322110 


Q ss_pred             -----------HhhHHHHHH-hhccchhhhhcccCCCChHHHHHhhhhhHHHh
Q 016470          154 -----------ELLWYERVE-EVSMPHFRNHRNNMGFTPEELFATANNELRAQ  194 (389)
Q Consensus       154 -----------~l~~~~~v~-~~~~~~~~~~~n~~g~tp~~l~~~~~~~l~~~  194 (389)
                                 .-+-.+-|. .+.-......+|.+|+|++|+..+.......+
T Consensus       219 t~~gtalheaalcgk~evvr~ll~~gin~h~~n~~~qtaldil~d~~~~~~~e  271 (854)
T KOG0507|consen  219 TEDGTALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALDIIIDLQENRRYE  271 (854)
T ss_pred             cccchhhhhHhhcCcchhhhHHHhhccccccccccchHHHHHHHhcchhhhhh
Confidence                       001111111 11122335678999999999987765544333

>PHA02792 ankyrin-like protein; Provisional

Probab=99.52  E-value=5.3e-15  Score=149.18  Aligned_cols=62  Identities=19%  Similarity=0.148  Sum_probs=54.0

Q ss_pred             ccccCCCCCcHHHHHHHcC-------ChhhHHHHHhcCCcccccccccccccccccccccccC--CCCccccCCC
Q 016470           81 VEHIDDEGRNILHVAIKYR-------QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKR--SDYVPEKMEG  146 (389)
Q Consensus        81 ~~~~d~~G~t~Lh~A~~~g-------~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~--~~~~~~~l~~  146 (389)
                      ++..|..|+||||+|+.++       +.++++.|+++|++    ++.+|..|.||||+|+...  ..++++.+..
T Consensus       168 i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~----~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~  238 (631)
T PHA02792        168 TDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKE----MRYYTYREHTTLYYYVDKCDIKREIFDALFD  238 (631)
T ss_pred             cccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCC----cCccCCCCChHHHHHHHcccchHHHHHHHHh
Confidence            4566778999999999999       89999999999999    9999999999999999988  5566665543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=6.7e-14  Score=98.05  Aligned_cols=55  Identities=24%  Similarity=0.331  Sum_probs=26.3

Q ss_pred             hhhcC-CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHH
Q 016470           40 VDQKG-IGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVA   95 (389)
Q Consensus        40 Ll~~g-a~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A   95 (389)
                      |+++| +++|.+|.+|.||||+|++.|+.+++++|+ ..|++++.+|.+|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            45666 777777777777777777777777777777 77777777777777777776

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.45  E-value=4.9e-14  Score=108.63  Aligned_cols=75  Identities=27%  Similarity=0.393  Sum_probs=68.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCC
Q 016470           58 LFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        58 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~  137 (389)
                      ||+|++.|+.++++.|+ +.+.+++.    |+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++
T Consensus         1 L~~A~~~~~~~~~~~ll-~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLL-EKGADINL----GNTALHYAAENGNLEIVKLLLENGAD----INSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHH-HTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC----TT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHH-HCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc----ccccCCCCCCHHHHHHHcCC
Confidence            79999999999999999 47766665    89999999999999999999999999    99999999999999999988


Q ss_pred             CCcc
Q 016470          138 DYVP  141 (389)
Q Consensus       138 ~~~~  141 (389)
                      .+++
T Consensus        72 ~~~~   75 (89)
T PF12796_consen   72 LEIV   75 (89)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7666

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.45  E-value=3.1e-14  Score=141.86  Aligned_cols=157  Identities=18%  Similarity=0.121  Sum_probs=126.8

Q ss_pred             CCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCC
Q 016470           13 SWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR   89 (389)
Q Consensus        13 ~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~   89 (389)
                      +.|..|   ..+.|.||.|+.+|+.+   +|+++.+-++..|..|.+|||+|+..|+.|+++.++ ..++..|..+..|.
T Consensus        41 s~n~qd---~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll-~q~d~~na~~~e~~  116 (854)
T KOG0507|consen   41 SHNLQD---YSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLL-LQTDILNAVNIENE  116 (854)
T ss_pred             cccccC---ccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHH-hcccCCCcccccCc
Confidence            344555   46778899999999877   889999999999999999999999999999999999 66788999999999


Q ss_pred             cHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchh
Q 016470           90 NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHF  169 (389)
Q Consensus        90 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~  169 (389)
                      ||||.|+++||.+++.+|+++|++    .-.+|+.+.|+|.+|++.|..+++..+....+..+.       .. ..+   
T Consensus       117 tplhlaaqhgh~dvv~~Ll~~~ad----p~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~-------~~-~~~---  181 (854)
T KOG0507|consen  117 TPLHLAAQHGHLEVVFYLLKKNAD----PFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQS-------SL-RVG---  181 (854)
T ss_pred             CccchhhhhcchHHHHHHHhcCCC----ccccCcccccHHHHHHHhhhhHHHHHHhhhccchhh-------cc-cCC---
Confidence            999999999999999999999999    889999999999999999998887444333222221       00 111   


Q ss_pred             hhhcccCCCChHHHHHhhh
Q 016470          170 RNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       170 ~~~~n~~g~tp~~l~~~~~  188 (389)
                      -..+.-.+-+|+|++.+++
T Consensus       182 ~~~~~~~~~~plHlaakng  200 (854)
T KOG0507|consen  182 DIKRPFPAIYPLHLAAKNG  200 (854)
T ss_pred             CCCCCCCCcCCcchhhhcc
Confidence            2334455677888877653

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.45  E-value=5e-14  Score=141.98  Aligned_cols=137  Identities=22%  Similarity=0.216  Sum_probs=113.8

Q ss_pred             HHHHHHHhCCCC-C-ccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCC--------cC---------------C
Q 016470            2 ELARFLIRRDTS-W-EITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSA--------ID---------------N   53 (389)
Q Consensus         2 eiv~~Ll~~ga~-v-n~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~--------d~---------------~   53 (389)
                      |+++.|++.-.. + +....++..|.++||.|..+.+.+   +|++.|||++++        |+               .
T Consensus       160 ~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~Yf  239 (782)
T KOG3676|consen  160 ELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYF  239 (782)
T ss_pred             HHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeee
Confidence            456666654211 1 122223567889999999988877   899999999543        11               3


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccccccccccc
Q 016470           54 AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus        54 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~  133 (389)
                      |+.||..||.-++.|++++|+ ++|+|++.+|.+|+|.||..+.+-..++.++++++|++  .+...+|++|-|||.+|+
T Consensus       240 GEyPLSfAAC~nq~eivrlLl-~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLAa  316 (782)
T KOG3676|consen  240 GEYPLSFAACTNQPEIVRLLL-AHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLAA  316 (782)
T ss_pred             ccCchHHHHHcCCHHHHHHHH-hcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHHH
Confidence            889999999999999999999 79999999999999999999999999999999999986  567889999999999999


Q ss_pred             ccCCCCcc
Q 016470          134 IKRSDYVP  141 (389)
Q Consensus       134 ~~~~~~~~  141 (389)
                      +.|+.++.
T Consensus       317 klGk~emf  324 (782)
T KOG3676|consen  317 KLGKKEMF  324 (782)
T ss_pred             HhhhHHHH
Confidence            99988876

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.41  E-value=1.1e-13  Score=96.88  Aligned_cols=56  Identities=29%  Similarity=0.404  Sum_probs=34.1

Q ss_pred             HHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccc
Q 016470           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMT  132 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA  132 (389)
                      |++..+.+++.+|..|+||||+|+.+|+.+++++|++.|++    ++.+|.+|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d----~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD----PNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC----CCCCcCCCCCHHHhC
Confidence            45444589999999999999999999999999999999999    999999999999987

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.40  E-value=1.3e-12  Score=117.07  Aligned_cols=114  Identities=19%  Similarity=0.221  Sum_probs=102.3

Q ss_pred             CCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCC-----HHHHHHHHHHCCC---cccccCCCCCcH
Q 016470           23 QSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGC-----IEIVKEIFNVYPQ---AVEHIDDEGRNI   91 (389)
Q Consensus        23 ~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~-----~~~v~~Ll~~~~~---~~~~~d~~G~t~   91 (389)
                      ....++|.++..+..+   .+++.|++++.+|.+|.||||+|+..|+     .++++.|+ ..++   ..+.+|.+|+||
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~~~~g~tp  150 (235)
T COG0666          72 DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL-EAGADLDVNNLRDEDGNTP  150 (235)
T ss_pred             cccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHH-HcCCCCCCccccCCCCCch
Confidence            3456688887777655   8899999999999999999999999999     99999999 6666   677779999999


Q ss_pred             HHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           92 LHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        92 Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      ||+|+..|+.++++++++.|++    ++.+|..|.|++|.|+..++..+.
T Consensus       151 l~~A~~~~~~~~~~~ll~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~  196 (235)
T COG0666         151 LHWAALNGDADIVELLLEAGAD----PNSRNSYGVTALDPAAKNGRIELV  196 (235)
T ss_pred             hHHHHHcCchHHHHHHHhcCCC----CcccccCCCcchhhhcccchHHHH
Confidence            9999999999999999999999    899999999999999998876655

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.40  E-value=5.2e-13  Score=108.22  Aligned_cols=115  Identities=31%  Similarity=0.388  Sum_probs=95.8

Q ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccc
Q 016470           49 SAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        49 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~Tp  128 (389)
                      .+|.+|.||||.|++.|+.++++.|+ ..+.+.+.+|..|.||+|.|+..++.+++++|++.+.+    ++..|..|.||
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li-~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~~~   76 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD----VNARDKDGNTP   76 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCH
Confidence            45788999999999999999999999 77777789999999999999999999999999999987    88889999999


Q ss_pred             cccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhh
Q 016470          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       129 LhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                      +|.|+..++.++.+.+...                   ....+..+..|+||++.+...
T Consensus        77 l~~a~~~~~~~~~~~L~~~-------------------~~~~~~~~~~~~~~l~~~~~~  116 (126)
T cd00204          77 LHLAARNGNLDVVKLLLKH-------------------GADVNARDKDGRTPLHLAAKN  116 (126)
T ss_pred             HHHHHHcCcHHHHHHHHHc-------------------CCCCcccCCCCCCHHHHHHhc
Confidence            9999998875554221110                   012356778899999988765

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.39  E-value=8.8e-13  Score=133.10  Aligned_cols=156  Identities=23%  Similarity=0.240  Sum_probs=111.8

Q ss_pred             CCCccccccccCCchhhhhhhcCCC--c-h---hhhhcCCC-CC----CCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCc
Q 016470           12 TSWEITDSIQDQSKPKIHRYGANPN--A-S---SVDQKGIG-ES----SAIDNAETPLFLATKSGCIEIVKEIFNVYPQA   80 (389)
Q Consensus        12 a~vn~~~~~~~~~~~~Lh~a~~~~~--~-~---~Ll~~ga~-~n----~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~   80 (389)
                      ++++.++. +..|.|.||.+..+..  . +   .|++.-.. +|    .....|.||||+|+.+.+.++|++|+ +.|+|
T Consensus       132 ~~w~~~~R-Ga~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl-~~gAD  209 (782)
T KOG3676|consen  132 TDWKLNER-GATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLL-AAGAD  209 (782)
T ss_pred             hhhccccc-cchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHH-HcCCc
Confidence            34444442 4678899997765322  2 2   44443211 12    12356999999999999999999999 88888


Q ss_pred             cccc---------CC--------------CCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCC
Q 016470           81 VEHI---------DD--------------EGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        81 ~~~~---------d~--------------~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~  137 (389)
                      ++++         |.              .|+.||..||..+|++++++|+++|+|    +|++|.+|||.||..+..-.
T Consensus       210 V~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd----~~aqDS~GNTVLH~lVi~~~  285 (782)
T KOG3676|consen  210 VHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD----PNAQDSNGNTVLHMLVIHFV  285 (782)
T ss_pred             hhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCC----CCccccCCChHHHHHHHHHH
Confidence            8764         11              377899999999999999999999999    99999999999999876521


Q ss_pred             CCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhhhh
Q 016470          138 DYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNE  190 (389)
Q Consensus       138 ~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~~~  190 (389)
                                       ...+..............+|++|.||+.++++..+.
T Consensus       286 -----------------~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~  321 (782)
T KOG3676|consen  286 -----------------TEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKK  321 (782)
T ss_pred             -----------------HHHHHHHHhcCCCccccccccCCCChHHHHHHhhhH
Confidence                             112222222222233568999999999999876543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.38  E-value=1e-12  Score=91.40  Aligned_cols=54  Identities=33%  Similarity=0.554  Sum_probs=45.6

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHH
Q 016470           54 AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVI  108 (389)
Q Consensus        54 G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  108 (389)
                      |+||||+|++.|+.++++.|+ +.+.+++.+|.+|+||||+|+.+|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll-~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLL-EHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHH-HTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999 669999999999999999999999999999986

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.37  E-value=1.5e-12  Score=135.94  Aligned_cols=102  Identities=16%  Similarity=0.228  Sum_probs=93.6

Q ss_pred             hhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhh
Q 016470           27 KIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEI  103 (389)
Q Consensus        27 ~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~i  103 (389)
                      .||.++..|+.+   .|+++|+|+|.+|.+|.||||+|+.+|+.+++++|+ ++|++++.+|.+|+||||+|+.+|+.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL-~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLL-EFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            377888899877   889999999999999999999999999999999999 7899999999999999999999999999


Q ss_pred             HHHHHhc-------CCccccccccccccccccccccc
Q 016470          104 FELVIQM-------EVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus       104 v~~Ll~~-------~~~~~~l~~~~d~~G~TpLhlA~  133 (389)
                      +++|+++       |++    .+.++.+|++|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~----~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGAN----AKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCC----CCccccCCCCccchhh
Confidence            9999998       666    7888888888877665

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.37  E-value=1.1e-12  Score=98.19  Aligned_cols=98  Identities=16%  Similarity=0.188  Sum_probs=83.4

Q ss_pred             hhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhH
Q 016470           28 IHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIF  104 (389)
Q Consensus        28 Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv  104 (389)
                      ..++.++|..+   .....|.|+|..- .|++|||+|+-.|..+++++|+ ..|++++.+|+.|-|||..|+..||.++|
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli-~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLI-SIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHH-HhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            45667777766   4556677776554 7999999999999999999999 89999999999999999999999999999


Q ss_pred             HHHHhcCCccccccccccccccccccc
Q 016470          105 ELVIQMEVPMRRLVRKIDNGGNTLLHM  131 (389)
Q Consensus       105 ~~Ll~~~~~~~~l~~~~d~~G~TpLhl  131 (389)
                      ++|+++|++    ...+.-+|.+.+..
T Consensus        84 klLL~~GAd----rt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   84 KLLLQNGAD----RTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHcCcc----cceeCCCchhHHhh
Confidence            999999998    66777777776543

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.25  E-value=2.4e-11  Score=108.73  Aligned_cols=106  Identities=18%  Similarity=0.251  Sum_probs=95.9

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCC-----ch---hhhhcCC---CCCCCcCCCCCHHHHHHHcCCHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPN-----AS---SVDQKGI---GESSAIDNAETPLFLATKSGCIEIV   70 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~-----~~---~Ll~~ga---~~n~~d~~G~tpLh~Aa~~g~~~~v   70 (389)
                      +++++++..|++++.++   ..+.|++|.++..+.     .+   .|++.|+   +.+.+|..|.||||+|+..|+.+++
T Consensus        87 ~~~~~l~~~~~~~~~~~---~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~  163 (235)
T COG0666          87 KIVKLLLASGADVNAKD---ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV  163 (235)
T ss_pred             HHHHHHHHcCCCccccc---CCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHH
Confidence            45678999999998888   667788999999998     44   8999999   5667799999999999999999999


Q ss_pred             HHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcC
Q 016470           71 KEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQME  111 (389)
Q Consensus        71 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  111 (389)
                      +.++ ..+++++.+|..|.|++|.|+..++.++++.+++.+
T Consensus       164 ~~ll-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         164 ELLL-EAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHH-hcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999 789999999999999999999999999999999864

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.23  E-value=2.2e-11  Score=109.20  Aligned_cols=115  Identities=10%  Similarity=0.044  Sum_probs=101.6

Q ss_pred             chhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccc-cCCCCCcHHHHHHHcCC
Q 016470           25 KPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH-IDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        25 ~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~-~d~~G~t~Lh~A~~~g~  100 (389)
                      ..+|..+...|+.+   .|++.--++|.+|..|.++|..|+.+|+.++++.++ +.|+|+|. ++..+.||||.|+.+|+
T Consensus        13 ~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll-~~gaDvN~~qhg~~YTpLmFAALSGn   91 (396)
T KOG1710|consen   13 KSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLL-ELGADVNDKQHGTLYTPLMFAALSGN   91 (396)
T ss_pred             hhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHH-HhCCCcCcccccccccHHHHHHHcCC
Confidence            45577777777776   566665668999999999999999999999999999 88999987 67889999999999999


Q ss_pred             hhhHHHHHhcCCcccccccccccccccccccccccCCCCccccC
Q 016470          101 LEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus       101 ~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l  144 (389)
                      .++.++|++.|+.    ....|.-|+|+-.+|+.-|+.+++..+
T Consensus        92 ~dvcrllldaGa~----~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   92 QDVCRLLLDAGAR----MYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             chHHHHHHhccCc----cccccchhhhHHHHHHHhcchHHHHHH
Confidence            9999999999998    888899999999999999998887544

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.20  E-value=1.4e-11  Score=128.69  Aligned_cols=83  Identities=17%  Similarity=0.198  Sum_probs=77.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccC
Q 016470           57 PLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus        57 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~  136 (389)
                      +|+.|+..|+.+.++.|+ ..|++++.+|.+|+||||+|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+..+
T Consensus        85 ~L~~aa~~G~~~~vk~LL-~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad----vn~~d~~G~TpLh~A~~~g  159 (664)
T PTZ00322         85 ELCQLAASGDAVGARILL-TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD----PTLLDKDGKTPLELAEENG  159 (664)
T ss_pred             HHHHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHCC
Confidence            588999999999999999 78999999999999999999999999999999999999    9999999999999999999


Q ss_pred             CCCccccC
Q 016470          137 SDYVPEKM  144 (389)
Q Consensus       137 ~~~~~~~l  144 (389)
                      +.++++.+
T Consensus       160 ~~~iv~~L  167 (664)
T PTZ00322        160 FREVVQLL  167 (664)
T ss_pred             cHHHHHHH
Confidence            88777444

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.13  E-value=1.1e-10  Score=87.56  Aligned_cols=88  Identities=13%  Similarity=0.070  Sum_probs=74.6

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |-|+-....|.++|..    .++++|||+|+..|..+   +|+..|++++.+|++|-|||..|+..||.++|++|+ +.|
T Consensus        16 DeVk~~v~~g~nVn~~----~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL-~~G   90 (117)
T KOG4214|consen   16 DEVKQSVNEGLNVNEI----YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLL-QNG   90 (117)
T ss_pred             HHHHHHHHccccHHHH----hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHH-HcC
Confidence            4456666677776644    36778899999999876   889999999999999999999999999999999999 899


Q ss_pred             CcccccCCCCCcHHHH
Q 016470           79 QAVEHIDDEGRNILHV   94 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~   94 (389)
                      ++-..+..+|.+.+-.
T Consensus        91 Adrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   91 ADRTIHAPDGTALIEA  106 (117)
T ss_pred             cccceeCCCchhHHhh
Confidence            9988888888876543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.12  E-value=1.3e-11  Score=85.71  Aligned_cols=50  Identities=28%  Similarity=0.383  Sum_probs=41.2

Q ss_pred             CCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           88 GRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        88 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |+||||+|++.|+.+++++|+++|.+    +|.+|.+|+||||+|++.++.+++
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d----in~~d~~g~t~lh~A~~~g~~~~~   50 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD----INAQDEDGRTPLHYAAKNGNIDIV   50 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG----TT-B-TTS--HHHHHHHTT-HHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHccCHHHH
Confidence            78999999999999999999999999    999999999999999999876655

...

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.06  E-value=2.3e-10  Score=110.09  Aligned_cols=99  Identities=17%  Similarity=0.152  Sum_probs=79.6

Q ss_pred             hhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHH
Q 016470           30 RYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFEL  106 (389)
Q Consensus        30 ~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~  106 (389)
                      -|+..|..+   ..+..=-|+.+.+++|-|+||-|+..||.++|++|+ ..|+++|..|.+||||||+|+..++..+++.
T Consensus       556 DaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi-~~ganVNa~DSdGWTPLHCAASCNnv~~ckq  634 (752)
T KOG0515|consen  556 DAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLI-EFGANVNAADSDGWTPLHCAASCNNVPMCKQ  634 (752)
T ss_pred             hhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHH-hcCCcccCccCCCCchhhhhhhcCchHHHHH
Confidence            456666665   233344677888999999999999999999999999 8999999999999999999999999999999


Q ss_pred             HHhcCCcccccccccccccccccccc
Q 016470          107 VIQMEVPMRRLVRKIDNGGNTLLHMT  132 (389)
Q Consensus       107 Ll~~~~~~~~l~~~~d~~G~TpLhlA  132 (389)
                      |++.|+-   ++-..=.++.|+..-+
T Consensus       635 LVe~Gaa---vfAsTlSDmeTa~eKC  657 (752)
T KOG0515|consen  635 LVESGAA---VFASTLSDMETAAEKC  657 (752)
T ss_pred             HHhccce---EEeeecccccchhhhc
Confidence            9999876   2333346677775543

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.04  E-value=1e-10  Score=120.74  Aligned_cols=135  Identities=13%  Similarity=0.095  Sum_probs=114.6

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCC-CcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESS-AIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~-~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      |++++|+.+|++++.+|   ..+.+||..++-.|+..   .|+++.++++. .|..+.|+|.+||..|+.++|++|| ..
T Consensus       771 e~vellv~rganiehrd---kkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl-~~  846 (2131)
T KOG4369|consen  771 EEVELLVVRGANIEHRD---KKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLL-NA  846 (2131)
T ss_pred             HHHHHHHHhcccccccc---cccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHH-Hh
Confidence            78999999999999888   56677788888777765   78888888865 4778999999999999999999999 88


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccc--ccccccccccccccCCCCccccC
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKI--DNGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~--d~~G~TpLhlA~~~~~~~~~~~l  144 (389)
                      |++-+.++....|||.+|...|..++++.|+..|+.    +|.+  .+.|-.||.+|..+++......+
T Consensus       847 gankehrnvsDytPlsla~Sggy~~iI~~llS~Gse----InSrtgSklgisPLmlatmngh~~at~~l  911 (2131)
T KOG4369|consen  847 GANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSE----INSRTGSKLGISPLMLATMNGHQAATLSL  911 (2131)
T ss_pred             hccccccchhhcCchhhhcCcchHHHHHHHhhcccc----cccccccccCcchhhhhhhccccHHHHHH
Confidence            899889999999999999999999999999999977    6655  47788999999998887655333

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.92  E-value=5.6e-10  Score=115.37  Aligned_cols=139  Identities=15%  Similarity=0.143  Sum_probs=124.4

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCC--cCCCCCHHHHHHHcCCHHHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSA--IDNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~--d~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |++.+||...++++.+.   ..|.|||+.++.-|.++   +|+..|+|+|.-  ...-.|+|-+++..||...++.|+ .
T Consensus       940 evv~lLLa~~anvehRa---ktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a~kGh~kfv~~ll-n 1015 (2131)
T KOG4369|consen  940 EVVFLLLAAQANVEHRA---KTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPANKGHTKFVPKLL-N 1015 (2131)
T ss_pred             hHHHHHHHHhhhhhhhc---ccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeecCCCchhhhHHhh-C
Confidence            78899999999988887   67788899999999888   899999999864  334568999999999999999999 7


Q ss_pred             CCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCch
Q 016470           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPA  148 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~  148 (389)
                      ..+.++.+|++|.|+|..|+..|+...+..|++++++    .+.+|+.-++++.-|.++++.+|+.++..++
T Consensus      1016 ~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad----~d~qdnr~~S~~maafRKgh~~iVk~mv~~a 1083 (2131)
T KOG4369|consen 1016 GDATVRVPNKKGCTVLWLASAGGALSSCPILVSSVAD----ADQQDNRTNSRTMAAFRKGHFAIVKKMVPPA 1083 (2131)
T ss_pred             CccceecccCCCCcccchhccCCccccchHHhhcccC----hhhhhcccccccHHHHHhchhheeccccCch
Confidence            7788999999999999999999999999999999999    9999999999999999999999998775544

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.86  E-value=3.1e-09  Score=101.73  Aligned_cols=106  Identities=20%  Similarity=0.249  Sum_probs=88.7

Q ss_pred             CCCcCCCCCH------HHHHHHcCCHHHHHHHHHHCCCcccccC-CCCCcHHHHHHHcCChhhHHHHHhcCCcccccccc
Q 016470           48 SSAIDNAETP------LFLATKSGCIEIVKEIFNVYPQAVEHID-DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRK  120 (389)
Q Consensus        48 n~~d~~G~tp------Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~  120 (389)
                      .-+|++|.+.      ||..++.|+.++.-.|| .-|+++|..+ ..|.||||+|++.|+..-+++|.-+|+|    ++.
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll-~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD----~~a  195 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLL-SLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGAD----PGA  195 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHH-HcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCC----CCC
Confidence            3456776665      89999999999888888 8899999877 6799999999999999999999999999    999


Q ss_pred             cccccccccccccccCCCCccccCCCchhhhhHHhhHH
Q 016470          121 IDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus       121 ~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~  158 (389)
                      .|.+|.||+.+|-..||.++.+.+....+.+-..+.+|
T Consensus       196 ~d~~GmtP~~~AR~~gH~~laeRl~e~~y~vtDR~~f~  233 (669)
T KOG0818|consen  196 QDSSGMTPVDYARQGGHHELAERLVEIQYELTDRLAFY  233 (669)
T ss_pred             CCCCCCcHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998877665555544444443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.84  E-value=8e-09  Score=92.99  Aligned_cols=101  Identities=14%  Similarity=0.121  Sum_probs=86.9

Q ss_pred             HHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCC-cCCCCCHHHHHHHcCCHHHHHHHHHHCCCc
Q 016470            5 RFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSA-IDNAETPLFLATKSGCIEIVKEIFNVYPQA   80 (389)
Q Consensus         5 ~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~-d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~   80 (389)
                      .-||+---++|.+|   +.|.++|..|+.+|+.+   +|++.|+|+|.. +..++||||.|+-.|+.++.+.|+ +.|+.
T Consensus        29 ~~LLs~vr~vn~~D---~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlll-daGa~  104 (396)
T KOG1710|consen   29 LALLSTVRQVNQRD---PSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLL-DAGAR  104 (396)
T ss_pred             HHHHHHhhhhhccC---CCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHH-hccCc
Confidence            34454434477777   77788899999999987   899999999865 667999999999999999999999 88999


Q ss_pred             ccccCCCCCcHHHHHHHcCChhhHHHHHh
Q 016470           81 VEHIDDEGRNILHVAIKYRQLEIFELVIQ  109 (389)
Q Consensus        81 ~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  109 (389)
                      ....|.-|+|+-..|+.-||.++|..+=.
T Consensus       105 ~~~vNsvgrTAaqmAAFVG~H~CV~iINN  133 (396)
T KOG1710|consen  105 MYLVNSVGRTAAQMAAFVGHHECVAIINN  133 (396)
T ss_pred             cccccchhhhHHHHHHHhcchHHHHHHhc
Confidence            99999999999999999999999887643

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.84  E-value=1.6e-09  Score=109.31  Aligned_cols=84  Identities=19%  Similarity=0.185  Sum_probs=79.2

Q ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccC-CCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccc
Q 016470           47 ESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID-DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGG  125 (389)
Q Consensus        47 ~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G  125 (389)
                      .|.+|..|+|+||+|+..|..++++.|+ .+|.++..+| ..|+||||.|+.+|+.+++..|+++|..    +..+|++|
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLl-qhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S----L~i~Dkeg  119 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLL-QHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS----LRIKDKEG  119 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHH-hcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc----eEEecccC
Confidence            5789999999999999999999999999 7799999999 5799999999999999999999999988    99999999


Q ss_pred             cccccccccc
Q 016470          126 NTLLHMTGIK  135 (389)
Q Consensus       126 ~TpLhlA~~~  135 (389)
                      ..||...++-
T Consensus       120 lsplq~~~r~  129 (1267)
T KOG0783|consen  120 LSPLQFLSRV  129 (1267)
T ss_pred             CCHHHHHhhc
Confidence            9999998873

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.81  E-value=2.9e-09  Score=102.74  Aligned_cols=78  Identities=26%  Similarity=0.281  Sum_probs=70.7

Q ss_pred             HHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCC
Q 016470           59 FLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSD  138 (389)
Q Consensus        59 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~  138 (389)
                      .-|+-.|..|+|+.++ ..-.|+...|..|-|+||-|+..||.+||++|++.|++    +|..|.+|+||||.|+.-++.
T Consensus       555 LDaaLeGEldlVq~~i-~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan----VNa~DSdGWTPLHCAASCNnv  629 (752)
T KOG0515|consen  555 LDAALEGELDLVQRII-YEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN----VNAADSDGWTPLHCAASCNNV  629 (752)
T ss_pred             HhhhhcchHHHHHHHH-HhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc----ccCccCCCCchhhhhhhcCch
Confidence            4588999999999999 55568888899999999999999999999999999999    999999999999999987766


Q ss_pred             Ccc
Q 016470          139 YVP  141 (389)
Q Consensus       139 ~~~  141 (389)
                      .++
T Consensus       630 ~~c  632 (752)
T KOG0515|consen  630 PMC  632 (752)
T ss_pred             HHH
Confidence            554

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.67  E-value=1.9e-08  Score=96.02  Aligned_cols=91  Identities=20%  Similarity=0.242  Sum_probs=60.0

Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhc-CCccccccccccccccccc
Q 016470           51 IDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQM-EVPMRRLVRKIDNGGNTLL  129 (389)
Q Consensus        51 d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~l~~~~d~~G~TpL  129 (389)
                      +.++..++.+|++.|++..++.+. -.|.+++..|.+.+|+||+|+..|+.+++++|++. +.+    ++.+|+.|+|||
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~-l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~----~~~kDRw~rtPl  577 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFA-LQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD----PDPKDRWGRTPL  577 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHH-HhcccccccccccchhheeecccCceeHHHHHHHHHcCC----CChhhccCCCcc
Confidence            344556667777777777666665 55667777777777777777777777777777664 333    666777777777


Q ss_pred             ccccccCCCCccccCCC
Q 016470          130 HMTGIKRSDYVPEKMEG  146 (389)
Q Consensus       130 hlA~~~~~~~~~~~l~~  146 (389)
                      +-|...+|.+++.++..
T Consensus       578 DdA~~F~h~~v~k~L~~  594 (622)
T KOG0506|consen  578 DDAKHFKHKEVVKLLEE  594 (622)
T ss_pred             hHhHhcCcHHHHHHHHH
Confidence            77777776666655543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.61  E-value=8.9e-08  Score=91.92  Aligned_cols=81  Identities=21%  Similarity=0.194  Sum_probs=74.0

Q ss_pred             hhhhhcCCCch---hhhhcCCCCCCCcCC-CCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhh
Q 016470           28 IHRYGANPNAS---SVDQKGIGESSAIDN-AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEI  103 (389)
Q Consensus        28 Lh~a~~~~~~~---~Ll~~ga~~n~~d~~-G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~i  103 (389)
                      ||..++.|+.+   .|+..|+++|..+.+ |.||||.|++.|+..-+++|+ -+|+++...|.+|.||+-+|-..||.++
T Consensus       137 LhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~-vYGAD~~a~d~~GmtP~~~AR~~gH~~l  215 (669)
T KOG0818|consen  137 LHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLA-VYGADPGAQDSSGMTPVDYARQGGHHEL  215 (669)
T ss_pred             HHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHh-hccCCCCCCCCCCCcHHHHHHhcCchHH
Confidence            88888889988   788999999998764 999999999999999999988 9999999999999999999999999988


Q ss_pred             HHHHHh
Q 016470          104 FELVIQ  109 (389)
Q Consensus       104 v~~Ll~  109 (389)
                      .+-|++
T Consensus       216 aeRl~e  221 (669)
T KOG0818|consen  216 AERLVE  221 (669)
T ss_pred             HHHHHH
Confidence            777765

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.55  E-value=1e-07  Score=93.12  Aligned_cols=85  Identities=22%  Similarity=0.291  Sum_probs=73.3

Q ss_pred             hhhhhcCCCch---hhhhcCCCC--C--CCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCC
Q 016470           28 IHRYGANPNAS---SVDQKGIGE--S--SAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        28 Lh~a~~~~~~~---~Ll~~ga~~--n--~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  100 (389)
                      |..|....++.   +|+.+|...  |  ..+.+|+|+||+||+.|++.+.++|+ .+|+++-.+|.+|+|+|.+|-+.|.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi-Wyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLI-WYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHH-HhCccceecccCCchhhhhHhhccc
Confidence            44555555555   788888543  3  34678999999999999999999999 9999999999999999999999999


Q ss_pred             hhhHHHHHhcCCc
Q 016470          101 LEIFELVIQMEVP  113 (389)
Q Consensus       101 ~~iv~~Ll~~~~~  113 (389)
                      .+++..|+++|+.
T Consensus       707 qec~d~llq~gcp  719 (749)
T KOG0705|consen  707 QECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999986

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.53  E-value=2.8e-08  Score=94.90  Aligned_cols=85  Identities=21%  Similarity=0.267  Sum_probs=78.4

Q ss_pred             hhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChh
Q 016470           26 PKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~  102 (389)
                      -.+.+|+..|++.   .+.-.|.|.+++|.+.+|+||+||..|+++++++|++.++.+++.+|.+|+|||--|...+|.+
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            3477899999988   4556789999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHhc
Q 016470          103 IFELVIQM  110 (389)
Q Consensus       103 iv~~Ll~~  110 (389)
                      ++++|-+.
T Consensus       588 v~k~L~~~  595 (622)
T KOG0506|consen  588 VVKLLEEA  595 (622)
T ss_pred             HHHHHHHH
Confidence            99999765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.52  E-value=1.3e-07  Score=58.35  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=14.9

Q ss_pred             CCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           88 GRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        88 G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                      |+||||+|+++|+.+++++|+++|++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~   27 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGAD   27 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCC
Confidence            55555555555555555555555555

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=98.51  E-value=1.2e-07  Score=57.05  Aligned_cols=26  Identities=23%  Similarity=0.410  Sum_probs=15.7

Q ss_pred             CCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           88 GRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        88 G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                      |+||||+|+++|+.+++++|+++|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            55666666666666666666666555

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=2.6e-07  Score=89.83  Aligned_cols=84  Identities=19%  Similarity=0.232  Sum_probs=70.9

Q ss_pred             hhhhhhhcCCCch-----hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCC
Q 016470           26 PKIHRYGANPNAS-----SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        26 ~~Lh~a~~~~~~~-----~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  100 (389)
                      .++|++....+.+     ++.+.+..++.+|..|+||||+|+..|+.+.++.|+ ..++++..+|++|+|+||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll-~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILL-SAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHH-hcCCCccccccccccHHHHHHHcCC
Confidence            3488777666554     344455678889999999999999999999999999 8899999999999999999999999


Q ss_pred             hhhHHHHHhc
Q 016470          101 LEIFELVIQM  110 (389)
Q Consensus       101 ~~iv~~Ll~~  110 (389)
                      .+++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            9887766654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.48  E-value=2e-07  Score=57.41  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=30.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCC
Q 016470           53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDD   86 (389)
Q Consensus        53 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   86 (389)
                      +|.||||+|+..|+.+++++|+ ++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll-~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLL-KHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHH-HTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHH-HCcCCCCCCCC
Confidence            5899999999999999999999 79999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.48  E-value=7.8e-08  Score=93.61  Aligned_cols=110  Identities=23%  Similarity=0.225  Sum_probs=91.9

Q ss_pred             hhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCc-ccccCCCCCcHHHHHHHcCChhh
Q 016470           28 IHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEI  103 (389)
Q Consensus        28 Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~-~~~~d~~G~t~Lh~A~~~g~~~i  103 (389)
                      +..++..++.-   ..-..|.+.-.++.+..+.||+|++.|+.|+|++++...|.. .++.|..|+|+||-|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            34556666543   334467777788889999999999999999999999555443 67789999999999999999999


Q ss_pred             HHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470          104 FELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       104 v~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      .++|++.|+.    +...|.+|.||-.-|-+.++.++.
T Consensus       950 c~~lvdagas----l~ktd~kg~tp~eraqqa~d~dla  983 (1004)
T KOG0782|consen  950 CQLLVDAGAS----LRKTDSKGKTPQERAQQAGDPDLA  983 (1004)
T ss_pred             HHHHHhcchh----heecccCCCChHHHHHhcCCchHH
Confidence            9999999999    899999999999988888777665

>PF13606 Ank_3: Ankyrin repeat

Probab=98.45  E-value=2.5e-07  Score=55.59  Aligned_cols=29  Identities=45%  Similarity=0.580  Sum_probs=26.7

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHCCCccc
Q 016470           53 NAETPLFLATKSGCIEIVKEIFNVYPQAVE   82 (389)
Q Consensus        53 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~   82 (389)
                      +|+||||+|++.|+.|++++|+ ++|+++|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll-~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLL-EHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHH-HcCCCCC
Confidence            5899999999999999999999 7788876

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.35  E-value=3.1e-07  Score=93.27  Aligned_cols=76  Identities=17%  Similarity=0.131  Sum_probs=68.5

Q ss_pred             cCCchhhhhhhcCCCc---hhhhhcCCCCCCCcCC-CCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHH
Q 016470           22 DQSKPKIHRYGANPNA---SSVDQKGIGESSAIDN-AETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIK   97 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~---~~Ll~~ga~~n~~d~~-G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~   97 (389)
                      +.|+++||.++..+..   +.|+++|+|++.+|++ |+||||-|...|+.|++..|+ .+|.....+|++|.+||..-++
T Consensus        50 ~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL-~~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen   50 RYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLL-SKGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             hhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHH-hcCCceEEecccCCCHHHHHhh
Confidence            7788899988876654   4899999999999976 999999999999999999999 8999999999999999988776


Q ss_pred             c
Q 016470           98 Y   98 (389)
Q Consensus        98 ~   98 (389)
                      -
T Consensus       129 ~  129 (1267)
T KOG0783|consen  129 V  129 (1267)
T ss_pred             c
Confidence            3

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.23  E-value=7.2e-07  Score=86.82  Aligned_cols=82  Identities=20%  Similarity=0.294  Sum_probs=70.7

Q ss_pred             CHHHHHHHcCCHHHH-HHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccc
Q 016470           56 TPLFLATKSGCIEIV-KEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus        56 tpLh~Aa~~g~~~~v-~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~  134 (389)
                      -|+|.++.....+-. +++..+....++.+|..|+||||+|+..|+.+.++.|+..|++    +..+|++|++|||.|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad----v~~kN~~gWs~L~EAv~   97 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD----VSIKNNEGWSPLHEAVS   97 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC----ccccccccccHHHHHHH
Confidence            469999988776544 4444345567899999999999999999999999999999999    99999999999999999


Q ss_pred             cCCCCcc
Q 016470          135 KRSDYVP  141 (389)
Q Consensus       135 ~~~~~~~  141 (389)
                      .|+.+++
T Consensus        98 ~g~~q~i  104 (560)
T KOG0522|consen   98 TGNEQII  104 (560)
T ss_pred             cCCHHHH
Confidence            9988765

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.12  E-value=1.4e-06  Score=91.49  Aligned_cols=94  Identities=19%  Similarity=0.178  Sum_probs=82.3

Q ss_pred             cCCCCCCC--cCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccc
Q 016470           43 KGIGESSA--IDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRK  120 (389)
Q Consensus        43 ~ga~~n~~--d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~  120 (389)
                      +|+++|-.  -..|.|+||.|+..|..-+++.|+ .+|+++|..|..|+||+|.+...|+...+..++++|++    .++
T Consensus       643 ~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll-~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~----~~a  717 (785)
T KOG0521|consen  643 HGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLL-QNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGAD----PNA  717 (785)
T ss_pred             chhhhccchhhhcccchhhhhhccchHHHHHHHH-hcCCcchhhhccCCCcchhhhhhcccchhhhhcccccc----ccc
Confidence            34444443  346899999999999999999999 89999999999999999999999999999999999999    999


Q ss_pred             cccccccccccccccCCCCcc
Q 016470          121 IDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       121 ~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      .|.+|.+||++|....+.++.
T Consensus       718 ~~~~~~~~l~~a~~~~~~d~~  738 (785)
T KOG0521|consen  718 FDPDGKLPLDIAMEAANADIV  738 (785)
T ss_pred             cCccCcchhhHHhhhccccHH
Confidence            999999999999776555544

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.11  E-value=2.2e-06  Score=83.73  Aligned_cols=110  Identities=20%  Similarity=0.216  Sum_probs=83.4

Q ss_pred             HHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCC
Q 016470           58 LFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        58 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~  137 (389)
                      +..|+..++.--+++.- .+|.+.-.++.+..+.||+|++.|+.++++|++++|.  ..+++..|..|.|+||-|+..++
T Consensus       870 il~av~~~D~~klqE~h-~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p--~elld~~de~get~lhkaa~~~~  946 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETH-LNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGP--SELLDMADETGETALHKAACQRN  946 (1004)
T ss_pred             HHHHHHhccHHHHHHHH-hcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCC--HHHHHHHhhhhhHHHHHHHHhcc
Confidence            44566666544444444 5677888899999999999999999999999999984  46789999999999999998877


Q ss_pred             CCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhhh
Q 016470          138 DYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       138 ~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                      ..+..++..+...                   ....|.+|+||.+-+++...
T Consensus       947 r~vc~~lvdagas-------------------l~ktd~kg~tp~eraqqa~d  979 (1004)
T KOG0782|consen  947 RAVCQLLVDAGAS-------------------LRKTDSKGKTPQERAQQAGD  979 (1004)
T ss_pred             hHHHHHHHhcchh-------------------heecccCCCChHHHHHhcCC
Confidence            6666443332221                   24567889999998877653

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.00  E-value=1.4e-05  Score=68.16  Aligned_cols=69  Identities=14%  Similarity=0.010  Sum_probs=62.6

Q ss_pred             CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC-CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           44 GIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP-QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        44 ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~-~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                      +.++|.+|..|+||++.|+..|+.+.+.+|+ .+| +.+...|..|.+++.+|-+.|+.++++.|-+...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyll-grg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLL-GRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHh-ccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            5688999999999999999999999999999 666 88999999999999999999999999999876444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.81  E-value=6.9e-06  Score=86.06  Aligned_cols=126  Identities=14%  Similarity=0.070  Sum_probs=95.5

Q ss_pred             CCchhhhhhhcCCCch---hhhhc-CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHc
Q 016470           23 QSKPKIHRYGANPNAS---SVDQK-GIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        23 ~~~~~Lh~a~~~~~~~---~Ll~~-ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      .+.+.+|.++..+...   .+++- |...+..|.+|...+|. |..++.+..-+++...|..++.+|..||||||+|+.+
T Consensus       573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~  651 (975)
T KOG0520|consen  573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFR  651 (975)
T ss_pred             cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhc
Confidence            3456688888877655   34443 55556677778888888 5556667777777788999999999999999999999


Q ss_pred             CChhhHHHHHhcCCccccc--ccccccccccccccccccCCCCccccCCCchh
Q 016470           99 RQLEIFELVIQMEVPMRRL--VRKIDNGGNTLLHMTGIKRSDYVPEKMEGPAL  149 (389)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~l--~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~  149 (389)
                      |+..++..|++.|++...+  ++..+-.|.|+-.+|..+++..+...+...++
T Consensus       652 G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~L  704 (975)
T KOG0520|consen  652 GREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKAL  704 (975)
T ss_pred             CHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhHH
Confidence            9999999999888763332  33445579999999999999888766655443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.76  E-value=2e-05  Score=82.85  Aligned_cols=96  Identities=18%  Similarity=0.151  Sum_probs=78.2

Q ss_pred             CCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCC
Q 016470           10 RDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDD   86 (389)
Q Consensus        10 ~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~   86 (389)
                      +|.++|..+.. ..+.++||.++..+...   +|+++|+++|.+|..|+||+|.+...|+...+..++ +++++.+..|.
T Consensus       643 ~~~~~n~~~~~-~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll-~~~a~~~a~~~  720 (785)
T KOG0521|consen  643 HGCCENWPVVL-CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLL-KRGADPNAFDP  720 (785)
T ss_pred             chhhhccchhh-hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhc-cccccccccCc
Confidence            34444433222 33466799998887654   999999999999999999999999999999999999 79999999999


Q ss_pred             CCCcHHHHHHHcCChhhHHHH
Q 016470           87 EGRNILHVAIKYRQLEIFELV  107 (389)
Q Consensus        87 ~G~t~Lh~A~~~g~~~iv~~L  107 (389)
                      +|.+++++|....+.+++-++
T Consensus       721 ~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  721 DGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             cCcchhhHHhhhccccHHHHH
Confidence            999999999888666655443

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.75  E-value=0.0023  Score=66.38  Aligned_cols=91  Identities=16%  Similarity=0.117  Sum_probs=68.5

Q ss_pred             CCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCccc------
Q 016470           12 TSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVE------   82 (389)
Q Consensus        12 a~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~------   82 (389)
                      .++|+.|   ..|..+||.|..+++.+   +|++++.+.       ..+|.+|+..|.++.|+.++ .++....      
T Consensus        53 lninc~d---~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll-~~~~~~~~~~~~~  121 (822)
T KOG3609|consen   53 LNINCRD---PLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLL-VHFVDAPYLERSG  121 (822)
T ss_pred             cchhccC---hHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHH-hcccccchhcccc
Confidence            3556666   56677788888888877   777776555       34788888999999999888 4433321      


Q ss_pred             ----ccCCCCCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           83 ----HIDDEGRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        83 ----~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                          ..-..+-||+.+||..++.||++.|+++|+.
T Consensus       122 d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~  156 (822)
T KOG3609|consen  122 DANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHC  156 (822)
T ss_pred             ccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCC
Confidence                1224577999999999999999999999987

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.69  E-value=6.2e-05  Score=74.10  Aligned_cols=77  Identities=17%  Similarity=0.252  Sum_probs=63.6

Q ss_pred             HHHHHHhCCCCCcccccc-ccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            3 LARFLIRRDTSWEITDSI-QDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         3 iv~~Ll~~ga~vn~~~~~-~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      .+-+||.+|...++.... +.++.|+||.||..|++.   +|+=+|+|+..+|..|+|+|.||-+.|..|++..|+ .+|
T Consensus       639 t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~ll-q~g  717 (749)
T KOG0705|consen  639 TAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLL-QYG  717 (749)
T ss_pred             HHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHH-HcC
Confidence            456788898665444332 345588899999999987   788999999999999999999999999999999999 666


Q ss_pred             Cc
Q 016470           79 QA   80 (389)
Q Consensus        79 ~~   80 (389)
                      ..
T Consensus       718 cp  719 (749)
T KOG0705|consen  718 CP  719 (749)
T ss_pred             CC
Confidence            43

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.49  E-value=0.00021  Score=67.21  Aligned_cols=79  Identities=14%  Similarity=0.197  Sum_probs=59.1

Q ss_pred             hhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhH
Q 016470           28 IHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIF  104 (389)
Q Consensus        28 Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv  104 (389)
                      |..||+.|+.+   .|++.|.++|++|....+||.+|+-.||.++|++|+ ++|+-++.-.-+|.- -|+++.+.+  |-
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLL-enGAiC~rdtf~G~R-C~YgaLnd~--IR  115 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLL-ENGAICSRDTFDGDR-CHYGALNDR--IR  115 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHH-HcCCcccccccCcch-hhhhhhhHH--HH
Confidence            66888888877   788889999999988889999999999999999888 778766554455654 456666543  44


Q ss_pred             HHHHhc
Q 016470          105 ELVIQM  110 (389)
Q Consensus       105 ~~Ll~~  110 (389)
                      +.|+..
T Consensus       116 ~mllsy  121 (516)
T KOG0511|consen  116 RMLLSY  121 (516)
T ss_pred             HHHHHH
Confidence            455544

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.33  E-value=0.00034  Score=65.85  Aligned_cols=58  Identities=16%  Similarity=0.133  Sum_probs=54.6

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           55 ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        55 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                      .--|..||+.|..+.|+.|+ +.|.++|.+|....+||.+|+..||..++++|+++|+-
T Consensus        37 f~elceacR~GD~d~v~~LV-etgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLV-ETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHH-HhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            34689999999999999999 69999999999999999999999999999999999985

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.29  E-value=0.00011  Score=77.26  Aligned_cols=89  Identities=18%  Similarity=0.146  Sum_probs=70.5

Q ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHH-hcCCcccccccccccccc
Q 016470           48 SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVI-QMEVPMRRLVRKIDNGGN  126 (389)
Q Consensus        48 n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll-~~~~~~~~l~~~~d~~G~  126 (389)
                      ....-.|++-+|+++..++...++.+++..+......|.+|...+|.++. ++.+..-++. -.|..    ++.+|..|+
T Consensus       568 ~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~a----i~i~D~~G~  642 (975)
T KOG0520|consen  568 SSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGVA----IDIRDRNGW  642 (975)
T ss_pred             ccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeecccc----cccccCCCC
Confidence            44556799999999999999999999965466667788889999999555 4455444444 34555    899999999


Q ss_pred             cccccccccCCCCcc
Q 016470          127 TLLHMTGIKRSDYVP  141 (389)
Q Consensus       127 TpLhlA~~~~~~~~~  141 (389)
                      ||||+|+..|+..++
T Consensus       643 tpL~wAa~~G~e~l~  657 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLV  657 (975)
T ss_pred             cccchHhhcCHHHHH
Confidence            999999999987766

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=97.12  E-value=0.00015  Score=62.12  Aligned_cols=60  Identities=12%  Similarity=0.002  Sum_probs=54.9

Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcC-CcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQME-VPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~-~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      +.++|.+|..|||+++.|+..|+.+.+.||+++| +.    +...|..|++++.+|-+.|..+++
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~----vgv~d~ssldaaqlaek~g~~~fv   62 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF----VGVTDESSLDAAQLAEKGGAQAFV   62 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCccc----ccccccccchHHHHHHhcChHHHH
Confidence            3578999999999999999999999999999999 66    889999999999999998877665

>smart00248 ANK ankyrin repeats

Probab=96.17  E-value=0.0095  Score=33.61  Aligned_cols=21  Identities=43%  Similarity=0.744  Sum_probs=10.9

Q ss_pred             CCCHHHHHHHcCCHHHHHHHH
Q 016470           54 AETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus        54 G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      |.||+|+|+..|+.++++.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll   22 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLL   22 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHH
Confidence            445555555555555555555

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=96.17  E-value=0.008  Score=33.94  Aligned_cols=27  Identities=30%  Similarity=0.538  Sum_probs=24.7

Q ss_pred             CCCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           87 EGRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        87 ~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                      +|.||+|+|+..++.++++.+++.+.+
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            478999999999999999999998765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.11  E-value=0.045  Score=53.74  Aligned_cols=62  Identities=11%  Similarity=0.057  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHCCCccc------ccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccccccccccc
Q 016470           67 IEIVKEIFNVYPQAVE------HIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus        67 ~~~v~~Ll~~~~~~~~------~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~  133 (389)
                      .+.+++|. .++.+.|      ..|..--|+||+|+.+|..+++.++++.|+|    +..+|..|.||..++.
T Consensus       404 p~~ie~lk-en~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~D----p~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALK-ENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCD----PSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHH-hcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCC----chhcccCCCCcccccc
Confidence            45566665 5554432      3344567999999999999999999999999    9999999999999987

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.09  E-value=0.0026  Score=66.00  Aligned_cols=107  Identities=13%  Similarity=0.043  Sum_probs=78.9

Q ss_pred             hhhhcCCCch----hhhhc---CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCCh
Q 016470           29 HRYGANPNAS----SVDQK---GIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL  101 (389)
Q Consensus        29 h~a~~~~~~~----~Ll~~---ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~  101 (389)
                      ..++..|+..    .|-+.   ..++|..|.-|+++||.|..+.+.|++++|+ +++...       ..+|.+|+..|..
T Consensus        30 L~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl-~~~~~~-------gdALL~aI~~~~v  101 (822)
T KOG3609|consen   30 LLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLL-DTSSEE-------GDALLLAIAVGSV  101 (822)
T ss_pred             HHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHh-cCcccc-------chHHHHHHHHHHH
Confidence            3577777754    22222   2577899999999999999999999999999 554332       4589999999999


Q ss_pred             hhHHHHHhcCCcccccc------cccccccccccccccccCCCCcccc
Q 016470          102 EIFELVIQMEVPMRRLV------RKIDNGGNTLLHMTGIKRSDYVPEK  143 (389)
Q Consensus       102 ~iv~~Ll~~~~~~~~l~------~~~d~~G~TpLhlA~~~~~~~~~~~  143 (389)
                      ++++.++.+.......-      ...-.-+-||+.+||..++.++++.
T Consensus       102 ~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~  149 (822)
T KOG3609|consen  102 PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQC  149 (822)
T ss_pred             HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHH
Confidence            99999998754311111      1222457899999999988887644

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.54  E-value=0.014  Score=57.06  Aligned_cols=59  Identities=15%  Similarity=0.072  Sum_probs=49.0

Q ss_pred             chhhhhcCCCCCC------CcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHH
Q 016470           37 ASSVDQKGIGESS------AIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAI   96 (389)
Q Consensus        37 ~~~Ll~~ga~~n~------~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~   96 (389)
                      ++.|.+++.+.|.      .|.--.|+||+|+..|..++|.++| ..++|+...|..|+||..++.
T Consensus       407 ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~L-eeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  407 IEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFL-EEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             HHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHH-HhcCCchhcccCCCCcccccc
Confidence            3466777766643      2445789999999999999999999 677999999999999999987

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=83.85  E-value=2.2  Score=31.33  Aligned_cols=47  Identities=28%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             CHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhc
Q 016470           56 TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQM  110 (389)
Q Consensus        56 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~  110 (389)
                      .-+..|...|+.|+++.+++...  +   |   ...+..|+...+-+++++|++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~--~---~---~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNK--P---D---NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhc--c---H---HHHHHHHHHHhhHHHHHHHHHh
Confidence            46789999999999999984331  1   1   4579999999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	389
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-04

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 13/80 (16%)
Query: 30  RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
           + GA+ NAS  D  GI          TPL LA  +G +EIV E+   +   V   D++G 
Sbjct: 68  KNGADVNAS--DLTGI----------TPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGH 114
Query: 90  NILHVAIKYRQLEIFELVIQ 109
             LH+A KY  LEI E++++
Sbjct: 115 TPLHLAAKYGHLEIVEVLLK 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	389
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-04
2rfa_A	232	Transient receptor potential cation channel subfa	3e-07
2rfa_A	232	Transient receptor potential cation channel subfa	5e-07
2rfa_A	232	Transient receptor potential cation channel subfa	8e-07
2rfa_A	232	Transient receptor potential cation channel subfa	3e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-07
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-06
2etb_A	256	Transient receptor potential cation channel subfam	4e-07
2etb_A	256	Transient receptor potential cation channel subfam	7e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	4e-04
2pnn_A	273	Transient receptor potential cation channel subfa	5e-06
2pnn_A	273	Transient receptor potential cation channel subfa	9e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-04
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	7e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 19/101 (18%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
             ANPN +     G           TPL +A + G +E V  +     +A    +  +G 
Sbjct: 102 NNANPNLA--TTAG----------HTPLHIAAREGHVETVLALLEK--EASQACMTKKGF 147

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
             LHVA KY ++ + EL+++ +             G T LH
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAH----PNAAGKNGLTPLH 184

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 19/101 (18%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
           G +       + G           TPL +A+  G + IVK +      A     + +   
Sbjct: 4   GISGGGG--GESG----------LTPLHVASFMGHLPIVKNLLQR--GASPNVSNVKVET 49

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
            LH+A +    E+ + ++Q +      V        T LH 
Sbjct: 50  PLHMAARAGHTEVAKYLLQNKAK----VNAKAKDDQTPLHC 86

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           YG + NA     +G           TPL LA + G  E+V  + +         +  G  
Sbjct: 234 YGGSANA--ESVQG----------VTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLT 280

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
            LH+  +   + + +++I+  V     V      G T LH+
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVM----VDATTRMGYTPLHV 317

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 24/101 (23%), Positives = 37/101 (36%), Gaps = 17/101 (16%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
             A+PNA+   + G           TPL +A     ++IVK +              G  
Sbjct: 168 RDAHPNAA--GKNG----------LTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYT 214

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
            LH+A K  Q+E+   ++Q               G T LH+
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGS----ANAESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.7 bits (112), Expect = 8e-06
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 17/101 (16%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
             AN N    ++ G           TPL L  + G + +   +       V+     G  
Sbjct: 267 KQANGNLG--NKSG----------LTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYT 313

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
            LHVA  Y  +++ + ++Q +      V      G + LH 
Sbjct: 314 PLHVASHYGNIKLVKFLLQHQAD----VNAKTKLGYSPLHQ 350

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 19/102 (18%)

Query: 30  RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEG 88
           +  A  NA    +            +TPL  A + G   +VK +      A        G
Sbjct: 68  QNKAKVNA--KAKDD----------QTPLHCAARIGHTNMVKLLLEN--NANPNLATTAG 113

Query: 89  RNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
              LH+A +   +E    +++ E         +   G T LH
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEAS----QACMTKKGFTPLH 151

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 15/100 (15%), Positives = 33/100 (33%), Gaps = 14/100 (14%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           + A+ NA    + G           +PL  A + G  +IV  +          +  +G  
Sbjct: 333 HQADVNAK--TKLG----------YSPLHQAAQQGHTDIVTLLLKNGAS-PNEVSSDGTT 379

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
            L +A +   + + +++  +       V   D    +   
Sbjct: 380 PLAIAKRLGYISVTDVLKVV-TDETSFVLVSDKHRMSFPE 418

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 20/105 (19%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA----VEHIDD 86
            GA+P A   D+            ETPL  A +    E +  + +  P      +++ + 
Sbjct: 162 LGASPTA--KDKAD----------ETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANK 209

Query: 87  EGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           +G + LH AI     ++    ++M +     V   DN     L++
Sbjct: 210 QGNSHLHWAILINWEDVAMRFVEMGID----VNMEDNEHTVPLYL 250

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 31/99 (31%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           G   +                + + P+ LA  +   ++V  +       VE   + G+  
Sbjct: 76  GEVHSL--------------WHGQKPIHLAVMANKTDLVVAL-------VEGAKERGQMP 114

Query: 92  LHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
             +  +  + E+ E+   ++             G T LH
Sbjct: 115 ESLLNECDEREVNEIGSHVK----------HCKGQTALH 143

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 14/112 (12%), Positives = 30/112 (26%), Gaps = 28/112 (25%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVK------------EIFNVYP 78
            G + N    D +             PL+L+ ++  + + K                   
Sbjct: 233 MGIDVNM--EDNEH----------TVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNG 280

Query: 79  QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
             V        + +  A    + E+ +L+ +        V +  N G     
Sbjct: 281 TTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLD----EVVRSLNTGAGGAV 328

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 25/101 (24%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            G +P     ++ G           T L LA K GC++  K + +       H    G+ 
Sbjct: 42  TGVSPTI--QNRFG----------CTALHLACKFGCVDTAKYLAS---VGEVHSLWHGQK 86

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
            +H+A+   + ++             LV      G     +
Sbjct: 87  PIHLAVMANKTDLVVA----------LVEGAKERGQMPESL 117

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 13/130 (10%), Positives = 27/130 (20%), Gaps = 27/130 (20%)

Query: 2   ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLA 61
            L + L+++   + I               G       V                 +  A
Sbjct: 258 LLTKELLQKTDVFLIQACPYH--------NGTTVLPDRVVWL------------DFVPAA 297

Query: 62  TKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRK 120
                 E+++ +        V    + G        K     +  + +    P    VR 
Sbjct: 298 ADPSKQEVLQLLQEK--LDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAP----VRT 351

Query: 121 IDNGGNTLLH 130
                     
Sbjct: 352 RSRSRARSSA 361

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 51.3 bits (124), Expect = 1e-07
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 14/107 (13%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GAN N     +    +        T L  A + G +E++K + +     V   D+ GRN
Sbjct: 127 RGANVNLR--RKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRL------VRKIDNGGNTLLHM 131
            L  A+        E +  +      L      V      G T L +
Sbjct: 185 ALIHALLSSDDSDVEAITHL------LLDHGADVNVRGERGKTPLIL 225

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.9 bits (110), Expect = 1e-05
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 38/117 (32%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVK---------EIFNVYPQAV 81
            GA+ N    D  G           T    A   G ++ +K          +     +  
Sbjct: 94  KGADVNEC--DFYG----------FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQ 141

Query: 82  EHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKI-------DNGGNTLLHM 131
           E +   G   L  A +   +E+ ++          L+ ++       DN G   L  
Sbjct: 142 ERLRKGGATALMDAAEKGHVEVLKI----------LLDEMGADVNACDNMGRNALIH 188

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 17/78 (21%), Positives = 36/78 (46%), Gaps = 12/78 (15%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           +GA+ N     ++G          +TPL LA +   + +V+ +       +   D +G+ 
Sbjct: 208 HGADVNV--RGERG----------KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 91  ILHVAIKYRQLEIFELVI 108
            L +A++ +  +I EL+ 
Sbjct: 256 ALLLAVELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 18/101 (17%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
            GAN N               +   TPL  A +    +IV+ +      A        G 
Sbjct: 27  GGANVNFQE-----------EEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGA 73

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
               +A     +++ +L +         V + D  G T   
Sbjct: 74  TPFLLAAIAGSVKLLKLFLSKGAD----VNECDFYGFTAFM 110

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.1 bits (95), Expect = 6e-04
 Identities = 15/83 (18%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 50  AIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI-LHVAIKYRQLEIFELVI 108
           A+++    L  A ++  +++V+++       V   ++EG    LH A++  + +I EL++
Sbjct: 2   AVED-NHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 109 QMEVPMRRLVRKIDNGGNTLLHM 131
           +               G T   +
Sbjct: 60  RHGAD----PVLRKKNGATPFLL 78

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 20/114 (17%)

Query: 31  YGANPNASSVDQKGIGESSAIDNA-ETPLFLATKSGCIEIVKEIFNVYPQAVEH------ 83
            GA+ +A +           +    E PL  A   G  EIV+ +       +EH      
Sbjct: 97  RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLL-------IEHGADIRA 149

Query: 84  IDDEGRNILHVAIKYRQLEI----FELVIQ--MEVPMRRLVRKIDNGGNTLLHM 131
            D  G  +LH+ I           + L++       ++ L    +N G T   +
Sbjct: 150 QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 49.5 bits (119), Expect = 5e-07
 Identities = 14/113 (12%), Positives = 30/113 (26%), Gaps = 25/113 (22%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDD 86
            G   +       G          ET L +A     +E    +      +  + +     
Sbjct: 26  EGCEVHQ--RGAMG----------ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELY 73

Query: 87  EGRNILHVAIKYRQLEIFELVIQ---------MEVPMRRLVRKIDNGGNTLLH 130
           EG+  LH+A+  + + +   ++                     +   G   L 
Sbjct: 74  EGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLS 126

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 55  ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ--MEV 112
           E+PL LA K   ++ + ++       V      G   LH+A  Y  LE   ++++   E+
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 113 PMRRLVRKIDNGGNTLLHM 131
               +  +    G T LH+
Sbjct: 64  VFEPMTSE-LYEGQTALHI 81

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 21/88 (23%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNV---------YPQAV 81
           +GA+  A   D  G           T L +           +++N+              
Sbjct: 143 HGADIRA--QDSLG----------NTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLE 190

Query: 82  EHIDDEGRNILHVAIKYRQLEIFELVIQ 109
              +++G     +A     + +F+ ++Q
Sbjct: 191 LVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 14/101 (13%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
              N N          +    D+  TP  +A   G +E+VK +++   +  +  I ++G 
Sbjct: 58  KMENVNL---------DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 108

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
             LH+A+  +  E+ + +I+        VR  D      LH
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGAS----VRIKDKFNQIPLH 145

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 47.1 bits (113), Expect = 3e-06
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 20/105 (19%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDD 86
             +       DQ G            PL  +      EI   +     NV     ++ DD
Sbjct: 25  KPSLLLQK--DQDG----------RIPLHWSVSFQAHEITSFLLSKMENV--NLDDYPDD 70

Query: 87  EGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
            G    H+A     LE+ + +    +  +  + KI N G T LH+
Sbjct: 71  SGWTPFHIACSVGNLEVVKSLYDRPL--KPDLNKITNQGVTCLHL 113

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 29/108 (26%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GA+      D+            + PL  A   G +++++ +  +   AV   D +G  
Sbjct: 129 NGASVRI--KDKFN----------QIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWT 176

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRK-------IDNGGNTLLHM 131
            L  A+     +   L          LV K       +DN G     +
Sbjct: 177 PLFHALAEGHGDAAVL----------LVEKYGAEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.4 bits (101), Expect = 8e-05
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 1/76 (1%)

Query: 55  ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPM 114
             PL  A        V+E+ +  P  +   D +GR  LH ++ ++  EI   ++     +
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 62

Query: 115 RRLVRKIDNGGNTLLH 130
                  D+ G T  H
Sbjct: 63  NLDDYP-DDSGWTPFH 77

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.5 bits (119), Expect = 4e-07
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 17/84 (20%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF-----NVYPQAVEHID 85
            G +P     D +G           TPL LA + GC+  V  +            ++  +
Sbjct: 67  AGCDPEL--RDFRG----------NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114

Query: 86  DEGRNILHVAIKYRQLEIFELVIQ 109
             G   LH+A  +  L I EL++ 
Sbjct: 115 YNGHTCLHLASIHGYLGIVELLVS 138

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 20/108 (18%), Positives = 37/108 (34%), Gaps = 27/108 (25%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
            A  N    +             +TPL LA  +   EI + +       +         D
Sbjct: 35  LAFLNF--QNNLQ----------QTPLHLAVITNQPEIAEAL-------LGAGCDPELRD 75

Query: 86  DEGRNILHVAIKYRQLEIFELVIQ--MEVPMRRLVRKIDNGGNTLLHM 131
             G   LH+A +   L    ++ Q      +  +++  +  G+T LH+
Sbjct: 76  FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 49.8 bits (119), Expect = 4e-07
 Identities = 21/142 (14%), Positives = 43/142 (30%), Gaps = 18/142 (12%)

Query: 52  DNAETPLFLATKSGCIEIVK------------EIFNVYPQAVEHIDDEGRNILHVAIKYR 99
               + L +A +   ++ VK                 + +        G   L +A   +
Sbjct: 88  YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147

Query: 100 QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYE 159
           Q ++   +++        +   D+ GNT+LH   +   +         ALV+       +
Sbjct: 148 QWDVVTYLLE-NPHQPASLEATDSLGNTVLHALVMIADNSPENS----ALVIHMYDGLLQ 202

Query: 160 RVEE-VSMPHFRNHRNNMGFTP 180
                          N+ G TP
Sbjct: 203 MGARLCPTVQLEEISNHQGLTP 224

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 15/117 (12%)

Query: 30  RYGANPNASSVDQKGIGESSAIDNA-ETPLFLATKSGCIEIVKE-IFNVYPQA-VEHIDD 86
             GA+ +  +  +             E PL LA  +   ++V   + N +  A +E  D 
Sbjct: 111 ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS 170

Query: 87  EGRNILHVAIKYRQLEIFE--LVIQME----------VPMRRLVRKIDNGGNTLLHM 131
            G  +LH  +           LVI M            P  +L    ++ G T L +
Sbjct: 171 LGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.8 bits (115), Expect = 1e-06
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 25/105 (23%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
           G   +    +             +TPL LA  +    +V+ +       V        +D
Sbjct: 36  GRELDI--YNNLR----------QTPLHLAVITTLPSVVRLL-------VTAGASPMALD 76

Query: 86  DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
             G+   H+A ++R       ++    P    +   +  G T LH
Sbjct: 77  RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH 121

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 52  DNAETPLFLATKSGCIEIVKEIFNVYPQA---VEHIDDEGRNILHVAIKYRQLEIFELVI 108
           ++ +TPL +A   G +  V  + N++ Q    ++  ++  +  LH+A+      +  L++
Sbjct: 7   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66

Query: 109 QMEVPMRRLVRKIDNGGNTLLHM 131
                       +D  G T  H+
Sbjct: 67  TAGAS----PMALDRHGQTAAHL 85

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 15/80 (18%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFN---VYPQAVEHIDDEG 88
           GA+P A  +D+ G          +T   LA +      ++ + +        +E  + +G
Sbjct: 69  GASPMA--LDRHG----------QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDG 116

Query: 89  RNILHVAIKYRQLEIFELVI 108
              LHVA+     E  +L++
Sbjct: 117 LTALHVAVNTECQETVQLLL 136

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.6 bits (104), Expect = 4e-05
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 28/107 (26%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GA+ +A  VD K         +  +PL  A ++  + +V+ +       ++H       
Sbjct: 138 RGADIDA--VDIK---------SGRSPLIHAVENNSLSMVQLL-------LQHGANVNAQ 179

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
              G + LH A     L +   +++            +   +T L +
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGA----DSSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 39.7 bits (94), Expect = 8e-04
 Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 25/84 (29%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           +GAN NA      G           + L  A+  G + +V+ +       V         
Sbjct: 172 HGANVNA--QMYSG----------SSALHSASGRGLLPLVRTL-------VRSGADSSLK 212

Query: 85  DDEGRNILHVAIKYRQLEIFELVI 108
           +      L VA   R ++I     
Sbjct: 213 NCHNDTPLMVARSRRVIDILRGKA 236

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 28/107 (26%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEHI 84
           GA+ NA   D              TPL LA  +    +V        +            
Sbjct: 156 GADVNAM--DCDE----------NTPLMLAVLARRRRLVAYLMKAGADP--------TIY 195

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           +   R+ LH A   R   +   ++         + ++D  G T L +
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGD-IEELDRNGMTALMI 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 10/101 (9%)

Query: 31  YGANPNASSVDQKGIGESSAIDNA-ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
            GA  +     +K      +      T L  A +   + IVK +        +  D++G+
Sbjct: 260 KGAKVDYDGAARK-----DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGK 314

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
             + +A +  ++E+   +IQ        V  +D   +T   
Sbjct: 315 TPIMLAAQEGRIEVVMYLIQQGA----SVEAVDATDHTARQ 351

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 15/82 (18%)

Query: 28  IHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDD 86
           +   G+N +    D+ G          +TP+ LA + G IE+V  +      A VE +D 
Sbjct: 299 VGEKGSNKDKQ--DEDG----------KTPIMLAAQEGRIEVVMYLIQQ--GASVEAVDA 344

Query: 87  EGRNILHVAIKYRQLEIFELVI 108
                  +A       I ++  
Sbjct: 345 TDHTARQLAQANNHHNIVDIFD 366

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 17/108 (15%), Positives = 23/108 (21%), Gaps = 29/108 (26%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH-----IDD 86
              P     + +              L      G   I + I                  
Sbjct: 84  LQIPTEP--EPES----------PIKLHTEAA-GSYAITEPI-------TRESVNIIDPR 123

Query: 87  EGRNILHVAIKYRQLEIFELVIQMEVPMRRL----VRKIDNGGNTLLH 130
             R +LH        E  E +I  E          V  +D   NT L 
Sbjct: 124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLM 171

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.8 bits (115), Expect = 2e-06
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 16/99 (16%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           GA  +    D +G           T L LA K G  E+V+ + +     V   DD G   
Sbjct: 67  GALVDP--KDAEG----------STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP 114

Query: 92  LHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
           +  A +Y+ +++ +L++         +   DN  N  LH
Sbjct: 115 MIWATEYKHVDLVKLLLSKGSD----INIRDNEENICLH 149

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.1 bits (108), Expect = 1e-05
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 16/101 (15%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GAN +     +             TPL  A ++  +E VK +       V+  D EG  
Sbjct: 33  AGANIDT--CSEDQ----------RTPLMEAAENNHLEAVKYLIKAGAL-VDPKDAEGST 79

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
            LH+A K    E+ + ++         V   D+GG T +  
Sbjct: 80  CLHLAAKKGHYEVVQYLLSNGQMD---VNCQDDGGWTPMIW 117

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.2 bits (103), Expect = 5e-05
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 15/80 (18%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
              + +A  V+  G          ++PL +A +    + V    +    + V   + EG 
Sbjct: 166 AKCDLHA--VNIHG----------DSPLHIAARENRYDCVVLFLSR--DSDVTLKNKEGE 211

Query: 90  NILHVAIKYRQLEIFELVIQ 109
             L  A    Q+     + +
Sbjct: 212 TPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.2 bits (98), Expect = 2e-04
 Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 52  DNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVIQM 110
           D   TP+  AT+   +++VK + +    + +   D+E    LH A     ++I E+++  
Sbjct: 109 DGGWTPMIWATEYKHVDLVKLLLSK--GSDINIRDNEENICLHWAAFSGCVDIAEILLAA 166

Query: 111 EVPMRRLVRKIDNGGNTLLHM 131
           +      +  ++  G++ LH+
Sbjct: 167 KCD----LHAVNIHGDSPLHI 183

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 5/80 (6%)

Query: 52  DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQME 111
            N  +PL  A ++G ++I   +       ++   ++ R  L  A +   LE  + +I+  
Sbjct: 9   QNKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAG 67

Query: 112 VPMRRLVRKIDNGGNTLLHM 131
                 V   D  G+T LH+
Sbjct: 68  AL----VDPKDAEGSTCLHL 83

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 47.0 bits (113), Expect = 3e-06
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 16/99 (16%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           GA  +       G       D   TPL  AT+ G + +V ++          ID EG + 
Sbjct: 65  GAIVDQ-----LGG------DLNSTPLHWATRQGHLSMVVQLMKYGAD-PSLIDGEGCSC 112

Query: 92  LHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
           +H+A ++    I   +I         V  +D  G T L 
Sbjct: 113 IHLAAQFGHTSIVAYLIAKGQD----VDMMDQNGMTPLM 147

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 46.8 bits (112), Expect = 3e-06
 Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 34/162 (20%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEH 83
           +G N NA+  D  G           TPL  A     +++ K        +F     A+ +
Sbjct: 92  FGVNVNAA--DSDG----------WTPLHCAASCNNVQVCKFLVESGAAVF-----AMTY 134

Query: 84  IDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEK 143
            D +        ++    +  + +  ++      +  ++ G    L     +  D +P K
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEK----MGIMNKGVIYALWDYEPQNDDELPMK 190

Query: 144 MEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFA 185
                 ++  E        +     +    +  G+ P  L  
Sbjct: 191 EGDCMTIIHREDE------DEIEWWWARLNDKEGYVPRNLLG 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.7 bits (109), Expect = 7e-06
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
           +G     +                   L  ++  G  ++V+ I            +DEG 
Sbjct: 27  HGMRVKFN-------------PLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGI 71

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
             LH A+     EI + ++Q  V     V   D+ G T LH 
Sbjct: 72  TALHNAVCAGHTEIVKFLVQFGVN----VNAADSDGWTPLHC 109

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 16/85 (18%)

Query: 52  DNAETPLFLATKSGCIEIVKEIFNVYPQAVEH-----IDDEGRNILHVAIKYRQLEIFEL 106
              +  L    ++   +   E        + H      +     +L  +    + ++ + 
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSER-------IAHGMRVKFNPLPLALLLDSSLEGEFDLVQR 55

Query: 107 VIQMEVPMRRLVRKIDNGGNTLLHM 131
           +I             ++ G T LH 
Sbjct: 56  IIYEVDD----PSLPNDEGITALHN 76

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 28/106 (26%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH-----ID 85
           +GA  N   V               TPLF A  SG  + V  +       ++H      +
Sbjct: 114 HGAQVNG--VTADW----------HTPLFNACVSGSWDCVNLL-------LQHGASVQPE 154

Query: 86  DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
            +  + +H A +   +E    +I         +    +   T L++
Sbjct: 155 SDLASPIHEAARRGHVECVNSLIAYGGN----IDHKISHLGTPLYL 196

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 16/106 (15%), Positives = 33/106 (31%), Gaps = 28/106 (26%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH-----ID 85
           YG N +                   TPL+LA ++     VK++       +E        
Sbjct: 179 YGGNIDH--KISHL----------GTPLYLACENQQRACVKKL-------LESGADVNQG 219

Query: 86  DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
               + LH  ++    E+  L++          +  +  G   + +
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGA----DTQAKNAEGKRPVEL 261

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 53  NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEV 112
                +F   + G    V+   +     +   DD G + LH A +  +  + E++I    
Sbjct: 4   EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA 63

Query: 113 PMRRLVRKIDNGGNTLLHM 131
                +  ++ G +T LH+
Sbjct: 64  R----INVMNRGDDTPLHL 78

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 25/85 (29%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           Y A+ NA  V++ G            PL  A   G  ++ +++       V +       
Sbjct: 94  YKADINA--VNEHG----------NVPLHYACFWGQDQVAEDL-------VANGALVSIC 134

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQ 109
           +  G   +  A    +  + E   +
Sbjct: 135 NKYGEMPVDKAKAPLRELLRERAEK 159

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 17/86 (19%)

Query: 52  DNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------IDDEGRNILHVAIKYRQLEIFE 105
           D+  +PL  A + G   +V+ +       +        ++      LH+A  +   +I +
Sbjct: 37  DHGFSPLHWACREGRSAVVEML-------IMRGARINVMNRGDDTPLHLAASHGHRDIVQ 89

Query: 106 LVIQMEVPMRRLVRKIDNGGNTLLHM 131
            ++Q +      +  ++  GN  LH 
Sbjct: 90  KLLQYKAD----INAVNEHGNVPLHY 111

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.7 bits (111), Expect = 5e-06
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 16/118 (13%)

Query: 30  RYGANPNASSVDQ--KGIGESSAIDNAETPLFLATKSGCIEIVKE-IFNVYPQA-VEHID 85
             GA+  A++     K           E PL LA  +  + IVK  + N +  A +   D
Sbjct: 122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181

Query: 86  DEGRNILHVAIKYRQLEIF--ELVIQMEVPMRRLVRKI----------DNGGNTLLHM 131
             G  +LH  ++     +   + V  M   +  L  K+          +  G T L +
Sbjct: 182 SVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 39.8 bits (93), Expect = 9e-04
 Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 17/94 (18%)

Query: 55  ETPLFLATKSGCIEIVKEIFNVYPQAVEHI-------DDEGRNILHVA---IKYRQLEIF 104
              +F A      + ++ +     ++ + +        + G+  L  A   +   Q +  
Sbjct: 14  RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTI 73

Query: 105 ELVIQMEVPMRRL-------VRKIDNGGNTLLHM 131
            L++ +      L              G T LH+
Sbjct: 74  ALLLDVARKTDSLKQFVNASYTDSYYKGQTALHI 107

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 44.3 bits (106), Expect = 5e-06
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 19/100 (19%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
           GA+ NA    + G           TPL LA K+G  EIVK +      A V     +G  
Sbjct: 32  GADVNAR--SKDG----------NTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNT 77

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
             H+A K    EI +L+          V     G +   H
Sbjct: 78  PEHLAKKNGHHEIVKLLDAKGAD----VNARSWGSSHHHH 113

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.1 bits (113), Expect = 5e-06
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 31/109 (28%)

Query: 30  RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVE 82
           R GAN N    ++             TPL +A +    ++++       ++         
Sbjct: 235 RKGANVNE--KNKDF----------MTPLHVAAERAHNDVMEVLHKHGAKM--------N 274

Query: 83  HIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
            +D  G+  LH A     L+   L++            I   G T   M
Sbjct: 275 ALDSLGQTALHRAALAGHLQTCRLLLSYGSD----PSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.6 bits (104), Expect = 6e-05
 Identities = 12/101 (11%), Positives = 32/101 (31%), Gaps = 29/101 (28%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           +GA+P     +  G          ++ + +A      E +              + +G +
Sbjct: 146 HGADPTLV--NCHG----------KSAVDMAPTPELRERLT------------YEFKGHS 181

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           +L  A +    ++ + +    +  ++          T LH 
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQ-----PQSHETALHC 217

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.6 bits (104), Expect = 7e-05
 Identities = 19/107 (17%), Positives = 38/107 (35%), Gaps = 29/107 (27%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           +GA+ +A   D+ G            PL  A   G  E+ + +       ++H      +
Sbjct: 80  HGADVHA--KDKGG----------LVPLHNACSYGHYEVTELL-------LKHGACVNAM 120

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           D      LH A    ++E+  L++            ++  G + + M
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGAD----PTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
            A    +             +  +  L  A +SG  E +  +           D      
Sbjct: 14  SAKAVLTG------------EYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 92  LHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           LH+A  Y ++ I +L++Q        V   D GG   LH 
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGAD----VHAKDKGGLVPLHN 97

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 19/115 (16%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
             +       DQ             T L  A  +G  EIV+ +  +     V   DD G 
Sbjct: 29  DKSLATR--TDQDS----------RTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGW 74

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM 144
           + LH+A      EI + ++         V  ++  G T LH    K    +   +
Sbjct: 75  SPLHIAASAGXDEIVKALLVKGAH----VNAVNQNGCTPLHYAASKNRHEIAVML 125

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 19/102 (18%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
                N    D++G           TPL  A   G I +V+ +      A  + +     
Sbjct: 25  QENVINH--TDEEG----------FTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRE 70

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           + L +A      +I ++++   V     V + D  G T L  
Sbjct: 71  SALSLACSKGYTDIVKMLLDCGVD----VNEYDWNGGTPLLY 108

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 41.6 bits (99), Expect = 1e-04
 Identities = 17/101 (16%), Positives = 34/101 (33%), Gaps = 19/101 (18%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
            GA+P    + +            E+ L LA   G  +IVK + +      V   D  G 
Sbjct: 58  NGADPQL--LGKGR----------ESALSLACSKGYTDIVKMLLDC--GVDVNEYDWNGG 103

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
             L  A+    ++  +++++             + G   + 
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGAD----PTIETDSGYNSMD 140

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.8 bits (97), Expect = 2e-04
 Identities = 12/80 (15%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 53  NAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVIQME 111
                +      G +  +        +  + H D+EG   L  A  + Q+ + E ++Q  
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG 59

Query: 112 VPMRRLVRKIDNGGNTLLHM 131
                  + +  G  + L +
Sbjct: 60  AD----PQLLGKGRESALSL 75

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 15/78 (19%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
           G + N    D  G           TPL  A     ++ VK +      A      D G N
Sbjct: 92  GVDVNEY--DWNG----------GTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYN 137

Query: 91  ILHVAIKYRQLEIFELVI 108
            + +A+      + +++ 
Sbjct: 138 SMDLAVALGYRSVQQVIE 155

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 44.7 bits (107), Expect = 8e-06
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           + A+ N    D +G            PL LA K G + +V+ +       V H + +G  
Sbjct: 92  FQADVNI--EDNEG----------NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDT 139

Query: 91  ILHVAIKYRQLEIFELVI 108
              +A  Y + E+  L+ 
Sbjct: 140 ACDLARLYGRNEVVSLMQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.4 bits (101), Expect = 5e-05
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 28/107 (26%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GANP+    D+ G             +  A ++G ++ ++ +       +E        
Sbjct: 59  RGANPDLK--DRTG----------FAVIHDAARAGFLDTLQTL-------LEFQADVNIE 99

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           D+EG   LH+A K   L + E +++        V   ++ G+T   +
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASN---VGHRNHKGDTACDL 143

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 30/106 (28%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
           G +P     + +G          ET L +A+  G I  V+ +       +++       D
Sbjct: 1   GIDPFT---NHRG----------ETLLHIASIKGDIPSVEYL-------LQNGSDPNVKD 40

Query: 86  DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
             G   LH A  +  L++ EL++Q +     LV       ++ LH 
Sbjct: 41  HAGWTPLHEACNHGHLKVVELLLQHKA----LVNTTGYQNDSPLHD 82

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 38.9 bits (92), Expect = 4e-04
 Identities = 12/83 (14%), Positives = 27/83 (32%), Gaps = 21/83 (25%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDD 86
           + A  N +    +           ++PL  A K+G ++IVK +     +        ++ 
Sbjct: 65  HKALVNTT--GYQN----------DSPLHDAAKNGHVDIVKLLLSYGAS-----RNAVNI 107

Query: 87  EGRNILHVAIKYRQLEIFELVIQ 109
            G   +          +  L  +
Sbjct: 108 FGLRPVDYTDDESMKSLLLLPEK 130

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 26/107 (24%)

Query: 30  RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ 83
           R   +P      +  +       N    L  A  +G +E+V+       QAV+       
Sbjct: 6   RKAGSPRK--ARRARL-------NPLVLLLDAALTGELEVVQ-------QAVKEMNDPSQ 49

Query: 84  IDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
            ++EG   LH AI      I + +I         V   D+ G T LH
Sbjct: 50  PNEEGITALHNAICGANYSIVDFLITAGAN----VNSPDSHGWTPLH 92

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 16/106 (15%), Positives = 27/106 (25%), Gaps = 28/106 (26%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
             +P+    +++G           T L  A       IV  +       +         D
Sbjct: 44  MNDPSQP--NEEG----------ITALHNAICGANYSIVDFL-------ITAGANVNSPD 84

Query: 86  DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
             G   LH A       I   ++Q       +     + G T    
Sbjct: 85  SHGWTPLHCAASCNDTVICMALVQHGA---AIFATTLSDGATAFEK 127

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 43.2 bits (103), Expect = 1e-05
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 55  ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPM 114
           +     A K+G ++ VK+        V    + GR  LH A    QLEI E ++      
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGA-- 64

Query: 115 RRLVRKIDNGGNTLLHM 131
              +   D    T L  
Sbjct: 65  --DINAPDKHHITPLLS 79

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 27/116 (23%), Positives = 40/116 (34%), Gaps = 16/116 (13%)

Query: 32  GANPNA--SSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKE-IFNVYPQA-VEHIDDE 87
           GA+ +A       +   E       E PL LA  +    IV     N + QA +   D  
Sbjct: 116 GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSR 175

Query: 88  GRNILHVAIKYR--QLEIFELVIQM----------EVPMRRLVRKIDNGGNTLLHM 131
           G  +LH  +       E  + V +M            P   L   ++N G + L M
Sbjct: 176 GNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 43.9 bits (105), Expect = 1e-05
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 19/99 (19%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           GA       + +           +  L  A K+G +E VK++  V       I+      
Sbjct: 1   GAM-----GNSEA----------DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTP 45

Query: 92  LHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
           LH A  Y ++ + E ++Q        V   D GG   LH
Sbjct: 46  LHFAAGYNRVSVVEYLLQHGAD----VHAKDKGGLVPLH 80

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 29/106 (27%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
             N     ++ +            TPL  A     + +V+ +       ++H       D
Sbjct: 32  SVNCRD--IEGRQ----------STPLHFAAGYNRVSVVEYL-------LQHGADVHAKD 72

Query: 86  DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
             G   LH A  Y   E+ EL+++        V   D    T LH 
Sbjct: 73  KGGLVPLHNACSYGHYEVAELLVKHGAV----VNVADLWKFTPLHE 114

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 39.3 bits (93), Expect = 6e-04
 Identities = 25/106 (23%), Positives = 38/106 (35%), Gaps = 29/106 (27%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           +GA+ +A   D+ G            PL  A   G  E+ + +       V+H       
Sbjct: 64  HGADVHA--KDKGG----------LVPLHNACSYGHYEVAELL-------VKHGAVVNVA 104

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
           D      LH A    + EI +L++Q          K +  GNT L 
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGAD----PTKKNRDGNTPLD 146

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 10/109 (9%), Positives = 26/109 (23%), Gaps = 29/109 (26%)

Query: 28  IHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH---- 83
             +     N    ++ G          +T L  A   G  +IV+ +       +      
Sbjct: 126 FTQPNIELNQQ--NKLG----------DTALHAAAWKGYADIVQLL-------LAKGART 166

Query: 84  --IDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
              + E +    +A       + +     +     +    +        
Sbjct: 167 DLRNIEKKLAFDMATNAACASLLKKKQGTDA----VRTLSNAEDYLDDE 211

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.3 bits (95), Expect = 5e-04
 Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 30/102 (29%)

Query: 43  KGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------IDDEGRNILHVAI 96
                +   ++ + PL  A K G +  ++E        +++      +D  G   L+ A 
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLREC-------LDNRVGVNGLDKAGSTALYWAC 114

Query: 97  KYRQLEIFELVIQMEVPMRRLVRKI-------DNGGNTLLHM 131
                +I E+          L  +        +  G+T LH 
Sbjct: 115 HGGHKDIVEM----------LFTQPNIELNQQNKLGDTALHA 146

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.5 bits (104), Expect = 2e-05
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 19/102 (18%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
            GA+ NA   D  G           TPL LA  +G +EIV+ +      A V  +D  G 
Sbjct: 36  NGADVNA--EDASG----------WTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGM 81

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
             L +A  +  LEI E++++        V   D  G+T LH+
Sbjct: 82  TPLRLAALFGHLEIVEVLLKNGAD----VNANDMEGHTPLHL 119

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 39.7 bits (94), Expect = 5e-04
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 15/80 (18%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
            GA+ NA+  D +G           TPL LA   G +EIV+ +      A V   D  G+
Sbjct: 102 NGADVNAN--DMEG----------HTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGK 147

Query: 90  NILHVAIKYRQLEIFELVIQ 109
               ++I     ++ E++ +
Sbjct: 148 TAFDISIDNGNEDLAEILQK 167

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.4 bits (106), Expect = 2e-05
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 13/78 (16%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GAN +    + +           ETPLFLA + G  E  K + + +    +  D   R 
Sbjct: 179 NGANKDM--QNNRE----------ETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRL 225

Query: 91  ILHVAIKYRQLEIFELVI 108
              +A +    +I  L+ 
Sbjct: 226 PRDIAQERMHHDIVRLLD 243

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 12/106 (11%), Positives = 30/106 (28%), Gaps = 29/106 (27%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
             A+ NA  VD  G          ++ L  A     ++    +       +++       
Sbjct: 146 SHADVNA--VDDLG----------KSALHWAAAVNNVDAAVVL-------LKNGANKDMQ 186

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
           ++     L +A +    E  ++++             D+       
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDRLPRD 228

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 29/124 (23%)

Query: 31  YGANPN------------ASSVDQKGIGE----SSAID-NA-----ETPLFLATKSGCIE 68
             A+ N            A S D +G+ +    + A D +A      TPL LA +     
Sbjct: 79  ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG 138

Query: 69  IVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNT 127
           +++++ N    A V  +DD G++ LH A     ++   ++++            +N   T
Sbjct: 139 MLEDLINS--HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGA----NKDMQNNREET 192

Query: 128 LLHM 131
            L +
Sbjct: 193 PLFL 196

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 40.9 bits (97), Expect = 3e-04
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 33/109 (30%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GA+ +    D+ G          ET L LA +    +  K +       +E        
Sbjct: 45  QGASLHNQ-TDRTG----------ETALHLAARYSRSDAAKRL-------LEASADANIQ 86

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQ---MEVPMRRLVRKIDNGGNTLLH 130
           D+ GR  LH A+      +F+++I+    ++  R       + G T L 
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR------MHDGTTPLI 129

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.1 bits (105), Expect = 3e-05
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 18/101 (17%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GA  N              ++N E PL  A      +IVK +           DD+G  
Sbjct: 53  AGALKNL-------------LEN-EFPLHQAATLEDTKIVKILLFSGLD-DSQFDDKGNT 97

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
            L+ A+    ++  +L ++    +         G  T  + 
Sbjct: 98  ALYYAVDSGNMQTVKLFVKKNWRLM---FYGKTGWKTSFYH 135

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.8 bits (94), Expect = 9e-04
 Identities = 9/102 (8%), Positives = 26/102 (25%), Gaps = 18/102 (17%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
                      + G          +T  + A     + IV    +              +
Sbjct: 117 KNWRLMF--YGKTGW---------KTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAILLS 163

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNT-LLHM 131
            +H+ IK   +++  L++             ++      + +
Sbjct: 164 CIHITIKNGHVDMMILLLDYMTS----TNTNNSLLFIPDIKL 201

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 16/102 (15%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 31  YGANPNASSVDQKGI-GESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
              +    + D      +    D +  P  + ++       +     +   +E  + +G 
Sbjct: 100 PRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
             LHVA+ ++  E+  L+         L +     G T LH+
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHL 198

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 19/91 (20%)

Query: 50  AIDN-AETPLFLATKSGCIEIVKEIFN--VYPQAVEHIDDEGRNILHVAIKYRQLEIFEL 106
            +    +T L LA        +  +       + ++  +D G+  LH+A    +    E 
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 107 VIQMEVPMRRLVRK------IDNGGNTLLHM 131
                     L          + GG+T LH+
Sbjct: 64  ----------LYAAGAGVLVAERGGHTALHL 84

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 14/108 (12%), Positives = 26/108 (24%), Gaps = 30/108 (27%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEH 83
            GA+ N                   TPL LA ++    +++       +           
Sbjct: 180 AGADLNKPE-----------PTCGRTPLHLAVEAQAASVLELLLKAGADP--------TA 220

Query: 84  IDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
               GR  L  A+      +  L+     P      +      +    
Sbjct: 221 RMYGGRTPLGSALLRPNPILARLLRAHGAP----EPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 22/85 (25%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           + A      +D +        D  +T L LA   G    V+++                 
Sbjct: 31  FSAGHEY--LDLQN-------DLGQTALHLAAILGEASTVEKL-------YAAGAGVLVA 74

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQ 109
           +  G   LH+A + R      +++Q
Sbjct: 75  ERGGHTALHLACRVRAHTCACVLLQ 99

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 29/107 (27%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNI 91
           GA+ N    +             ++P   A   G  EI+  +       +   +  G N 
Sbjct: 62  GADINLQ--NSIS----------DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA 109

Query: 92  LHVAIKYRQLEIFELVIQMEVPMRRLVRK-------IDNGGNTLLHM 131
           L  A +   ++  +L          L+          ++ G T L  
Sbjct: 110 LIPAAEKGHIDNVKL----------LLEDGREDIDFQNDFGYTALIE 146

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 18/101 (17%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
               +   VD +G           TPL +A  +  IEI K + +    A +   +    +
Sbjct: 29  TYQVDE--VDTEG----------NTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDS 74

Query: 91  ILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
               A    + EI   +++   P    + K +  G   L  
Sbjct: 75  PYLYAGAQGRTEILAYMLKHATPD---LNKHNRYGGNALIP 112

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 9/81 (11%)

Query: 55  ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ-----LEIFELVIQ 109
              L  A + G I+ VK +     + ++  +D G   L  A+  R+      +I +L+++
Sbjct: 107 GNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME 166

Query: 110 MEVPMRRLVRKIDNGGNTLLH 130
                       DN G T + 
Sbjct: 167 NGAD----QSIKDNSGRTAMD 183

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 13/110 (11%), Positives = 33/110 (30%), Gaps = 24/110 (21%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-------VEHI 84
           GA+  +    ++G           T  F   + G  +I         +        +  +
Sbjct: 65  GADIKS--RTKEG----------TTLFFPLFQGGGNDITGTTELC--KIFLEKGADITAL 110

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRL---VRKIDNGGNTLLHM 131
               + ++   I    ++  E++   ++   +    +   D  G T L  
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 16/90 (17%), Positives = 26/90 (28%), Gaps = 15/90 (16%)

Query: 48  SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELV 107
           S+A+      +  A   G  E   E+F       +       NIL+  ++    E    +
Sbjct: 1   SNAMSE-YRTVSAAAMLGTYEDFLELFE--KGYEDKESVLKSNILYDVLRNNNDEARYKI 57

Query: 108 IQMEVPMRRLVRK------IDNGGNTLLHM 131
                    L+ K          G TL   
Sbjct: 58  SMF------LINKGADIKSRTKEGTTLFFP 81

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 8/84 (9%), Positives = 24/84 (28%), Gaps = 18/84 (21%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY-----PQA-VEHI 84
            GA+  A  + +            +  +F    +  ++  + I             +   
Sbjct: 103 KGADITA--LYKPY----------KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK 150

Query: 85  DDEGRNILHVAIKYRQLEIFELVI 108
           D  G   L    + ++    +++ 
Sbjct: 151 DKWGLTALEFVKRCQKPIALKMME 174

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.8 bits (102), Expect = 7e-05
 Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 25/84 (29%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GAN +    + +           ETPLFLA + G  E   ++       ++H       
Sbjct: 147 NGANKDM--QNNRE----------ETPLFLAAREGSYETA-KVL------LDHFANRDIT 187

Query: 85  DDEGRNILHVAIKYRQLEIFELVI 108
           D   R    +A +    +I  L+ 
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 18/89 (20%), Positives = 32/89 (35%), Gaps = 17/89 (19%)

Query: 51  IDNA-----ETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDDEGRNILHVAIKYRQL 101
           + N      ET L LA +    +  K +     +         D+ GR  LH A+     
Sbjct: 17  LHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-----NIQDNMGRTPLHAAVSADAQ 71

Query: 102 EIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
            +F+++I+        +    + G T L 
Sbjct: 72  GVFQILIRNRAT---DLDARMHDGTTPLI 97

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 39.3 bits (93), Expect = 8e-04
 Identities = 23/129 (17%), Positives = 47/129 (36%), Gaps = 39/129 (30%)

Query: 31  YGANPN------------ASSVDQKGIGE----SSAID-NA-----ETPLFLATKSGCIE 68
             A+ N            A S D +G+ +    + A D +A      TPL LA +     
Sbjct: 47  ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEG 106

Query: 69  IVKEIFNVYPQAVEH------IDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKID 122
           +++++       +        +DD G++ LH A     ++   ++++            +
Sbjct: 107 MLEDL-------INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN----KDMQN 155

Query: 123 NGGNTLLHM 131
           N   T L +
Sbjct: 156 NREETPLFL 164

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 43.1 bits (101), Expect = 8e-05
 Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 40/162 (24%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSG---CIEIVKEIFNVYPQAVEHIDDE 87
           +G+N      D  G          E+ L  A KS         + + +     +   D  
Sbjct: 153 HGSNRLY--GDNMG----------ESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM 200

Query: 88  GRNILHVAIKYRQLEIFELVIQ--MEVPMRRLVR-------KIDNGGNTLLHMTGIKRSD 138
            R ILH  I    +       +  +++ M  +V+          N   +  +    +R D
Sbjct: 201 NRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKD 260

Query: 139 YVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTP 180
            + E ++   ++    +L              N +++ G T 
Sbjct: 261 SILENLDLKWII--ANML--------------NAQDSNGDTC 286

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 20/102 (19%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
            GA+PN    D  G           +P+  A ++G ++ +K +      A V   D  G 
Sbjct: 57  QGASPNV--QDTSG----------TSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGA 102

Query: 90  NILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
             +H+A++     +   +          + + D  G T L +
Sbjct: 103 LPIHLAVQEGHTAVVSFLAA-----ESDLHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.2 bits (98), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 17/82 (20%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
           +GA+ N    D  G            P+ LA + G   +V  +     ++ +   D  G 
Sbjct: 90  HGADVNV--PDGTG----------ALPIHLAVQEGHTAVVSFLAA---ESDLHRRDARGL 134

Query: 90  NILHVAIKYRQLEIFELVI-QM 110
             L +A++    ++ +++   M
Sbjct: 135 TPLELALQRGAQDLVDILQGHM 156

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 29/104 (27%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
            GA+  A  V+ +G          +TPL +A +    E+++            ++ +G +
Sbjct: 128 QGAHVGA--VNSEG----------DTPLDIAEEEAMEELLQN----------EVNRQGVD 165

Query: 91  I---LHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           I        +    +  + +    +       +    G T LH+
Sbjct: 166 IEAARKEEERIMLRDARQWLNSGHIN----DVRHAKSGGTALHV 205

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.7 bits (99), Expect = 2e-04
 Identities = 18/104 (17%), Positives = 31/104 (29%), Gaps = 31/104 (29%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDD 86
            GAN N    D +G            PL  A   G ++I + +     +     V  ++ 
Sbjct: 95  NGANINQP--DNEG----------WIPLHAAASCGYLDIAEYLISQGAH-----VGAVNS 137

Query: 87  EGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
           EG   L +A +    E+ +            V +          
Sbjct: 138 EGDTPLDIAEEEAMEELLQN----------EVNRQGVDIEAARK 171

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 40.2 bits (95), Expect = 6e-04
 Identities = 16/110 (14%), Positives = 27/110 (24%), Gaps = 38/110 (34%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF----NVYPQAVEHIDDE 87
                                +       A  SG  E V  +     +     + + + +
Sbjct: 31  RKKTKVK-------------FDDGAVFLAACSSGDTEEVLRLLERGAD-----INYANVD 72

Query: 88  GRNILHVAIKYRQLEIFELVIQMEVPMRRLVRK------IDNGGNTLLHM 131
           G   LH A     +++ +           LV         DN G   LH 
Sbjct: 73  GLTALHQACIDDNVDMVKF----------LVENGANINQPDNEGWIPLHA 112

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.8 bits (94), Expect = 9e-04
 Identities = 19/105 (18%), Positives = 33/105 (31%), Gaps = 27/105 (25%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGR 89
              N       + G           T L +A   G  E++K +     +  V   D +G 
Sbjct: 188 GHINDVRH--AKSG----------GTALHVAAAKGYTEVLKLLIQA--RYDVNIKDYDGW 233

Query: 90  NILHVAIKYRQLEIFELVI----QMEVPMRRLVRKIDNGGNTLLH 130
             LH A  + + E   +++     ME         ++  G T   
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDME--------AVNKVGQTAFD 270

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 52  DNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVIQM 110
           +   TPL  A+  G IE V+ +      A    +  E  + L +A      +I  L+++ 
Sbjct: 34  ERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLASTGGYTDIVGLLLER 91

Query: 111 EVPMRRLVRKIDNGGNTLLHM 131
           +V     +   D  G T L  
Sbjct: 92  DVD----INIYDWNGGTPLLY 108

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 10/75 (13%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMR 115
             +      G ++ +KE        V   D+ G   L  A  + ++E    +++      
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-- 61

Query: 116 RLVRKIDNGGNTLLH 130
                +     + L 
Sbjct: 62  --PHILAKERESALS 74

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 39.3 bits (93), Expect = 6e-04
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 31/107 (28%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEHI 84
           GA+P+   + ++           E+ L LA+  G  +IV        +I           
Sbjct: 59  GADPHI--LAKER----------ESALSLASTGGYTDIVGLLLERDVDI--------NIY 98

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           D  G   L  A++   ++  E ++         +    + G T + +
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGAD----LTTEADSGYTPMDL 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 25/82 (30%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
           +GA+ NA   D              T L  AT+    E+V+ +       +++       
Sbjct: 89  HGADVNA--KDMLK----------MTALHWATEHNHQEVVELL-------IKYGADVHTQ 129

Query: 85  DDEGRNILHVAIKYRQLEIFEL 106
               +    ++I     ++ E+
Sbjct: 130 SKFCKTAFDISIDNGNEDLAEI 151

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 39.7 bits (94), Expect = 3e-04
 Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 29/106 (27%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            G + +A    +             TPL +A   G   IV+ +       ++H       
Sbjct: 56  AGVSRDAR--TKVD----------RTPLHMAASEGHANIVEVL-------LKHGADVNAK 96

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH 130
           D      LH A ++   E+ EL+I+        V        T   
Sbjct: 97  DMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFD 138

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 21/106 (19%), Positives = 30/106 (28%), Gaps = 30/106 (28%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------ID 85
           GA       D  G           +PL LA + G      E+       +          
Sbjct: 25  GAPFTT---DWLG----------TSPLHLAAQYGHFSTT-EVL------LRAGVSRDART 64

Query: 86  DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
              R  LH+A       I E++++        V   D    T LH 
Sbjct: 65  KVDRTPLHMAASEGHANIVEVLLKHGAD----VNAKDMLKMTALHW 106

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 16/105 (15%), Positives = 32/105 (30%), Gaps = 29/105 (27%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKE-IFNVYPQA-VEHIDDEGR 89
                    D +G           T L  A K+  + I ++ +      + V   D  G+
Sbjct: 58  FDKLED--KDIEG----------STALIWAVKNNRLGIAEKLLSK---GSNVNTKDFSGK 102

Query: 90  NILHVAIKYRQLEIFELVIQ----MEVPMRRLVRKIDNGGNTLLH 130
             L  +I +   E+   +++    +           +  G T L 
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGANVN--------DRNLEGETPLI 139

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 21/85 (24%), Positives = 32/85 (37%), Gaps = 27/85 (31%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEH 83
           +GAN N    + +G          ETPL +A+K G  EIVK       +I          
Sbjct: 123 HGANVND--RNLEG----------ETPLIVASKYGRSEIVKKLLELGADI--------SA 162

Query: 84  IDDEGRNILHVAIKYRQLEIFELVI 108
            D  G      A  + + E+ ++  
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFT 187

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.9 bits (92), Expect = 5e-04
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 15/78 (19%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
           GA+ NA   D+ G           TPL LA ++G +E+VK +      A V   D  GR 
Sbjct: 58  GADVNAK--DKNG----------RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRT 103

Query: 91  ILHVAIKYRQLEIFELVI 108
            LH+A +   LE+ +L++
Sbjct: 104 PLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.5 bits (91), Expect = 5e-04
 Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 31/107 (28%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVK-------EIFNVYPQAVEHI 84
           GA+ NA   D+ G           TPL LA ++G +E+VK       ++           
Sbjct: 25  GADVNA--KDKNG----------RTPLHLAARNGHLEVVKLLLEAGADV--------NAK 64

Query: 85  DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           D  GR  LH+A +   LE+ +L+++        V   D  G T LH+
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHL 107

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.5 bits (91), Expect = 7e-04
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 7/80 (8%)

Query: 53  NAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRNILHVAIKYRQLEIFELVIQME 111
           N  TPL LA ++G +E+VK +      A V   D  GR  LH+A +   LE+ +L+++  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58

Query: 112 VPMRRLVRKIDNGGNTLLHM 131
                 V   D  G T LH+
Sbjct: 59  A----DVNAKDKNGRTPLHL 74

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 25/84 (29%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEH------I 84
            GA+ NA  VD  G           TPL LA   G +EI + +       ++H       
Sbjct: 69  NGADVNA--VDAIG----------FTPLHLAAFIGHLEIAEVL-------LKHGADVNAQ 109

Query: 85  DDEGRNILHVAIKYRQLEIFELVI 108
           D  G+    ++I     ++ E++ 
Sbjct: 110 DKFGKTAFDISIGNGNEDLAEILQ 133

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 37.7 bits (89), Expect = 6e-04
 Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 15/78 (19%)

Query: 32  GANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA-VEHIDDEGRN 90
           GA+ NA   D+ G           TPL LA ++G +E+VK +      A V   D  GR 
Sbjct: 25  GADVNA--KDKNG----------RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRT 70

Query: 91  ILHVAIKYRQLEIFELVI 108
            LH+A +   LE+ +L++
Sbjct: 71  PLHLAARNGHLEVVKLLL 88

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.0 bits (93), Expect = 7e-04
 Identities = 16/124 (12%), Positives = 44/124 (35%), Gaps = 9/124 (7%)

Query: 10  RDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSG--CI 67
                 + ++++ +    + +  A+    +   + I  ++  +  ET L LA +S     
Sbjct: 128 AAKLHSLCEAVKTRDIFGLLQAYADGVDLT---EKIPLANGHEPDETALHLAVRSVDRTS 184

Query: 68  EIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNT 127
             + +        ++    +G   LH        E  +L+++ +      +   +  G T
Sbjct: 185 LHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKAS----IEIANESGET 240

Query: 128 LLHM 131
            L +
Sbjct: 241 PLDI 244

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	389
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.92
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.92
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.92
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.92
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.91
2rfa_A	232	Transient receptor potential cation channel subfa	99.91
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.91
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.91
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.91
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.91
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.91
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.91
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.9
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.9
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.9
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.9
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.9
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.9
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.9
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.9
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.9
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.89
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.89
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.89
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.89
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.89
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.88
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.88
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.88
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.88
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.88
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.88
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.88
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.88
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.88
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.88
2etb_A	256	Transient receptor potential cation channel subfam	99.88
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.87
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.87
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.87
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.87
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.87
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.87
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.87
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.87
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.87
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.87
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.87
2pnn_A	273	Transient receptor potential cation channel subfa	99.87
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.87
2rfa_A	232	Transient receptor potential cation channel subfa	99.87
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.87
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.87
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.86
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.86
2pnn_A	273	Transient receptor potential cation channel subfa	99.86
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.86
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.86
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.86
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.86
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.85
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.85
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.85
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.84
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.84
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.84
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.83
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.83
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.83
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.83
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.82
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.82
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.81
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.81
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.81
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.8
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.77
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.76
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.74
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.74
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.73
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.72
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.65
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.65
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.62

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.95  E-value=7.6e-29  Score=214.19  Aligned_cols=137  Identities=23%  Similarity=0.312  Sum_probs=128.2

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +|+|+.|+++|+|+|.+|   ..+.||||.|+..+..+   .|+++|++++.+|.+|+||||+|+..|+.+++++|+ ++
T Consensus        17 ~~~v~~Ll~~Gadvn~~d---~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll-~~   92 (169)
T 4gpm_A           17 KDRVKDLIENGADVNASD---SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SK   92 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHHCCCCCCCcC---CCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHH-HC
Confidence            378999999999999988   66778899999999877   889999999999999999999999999999999999 88


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCC
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKME  145 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~  145 (389)
                      |++++.+|.+|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|++.++.++++.+.
T Consensus        93 gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad----~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  156 (169)
T 4gpm_A           93 GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD----VNTSDSDGRTPLDLAREHGNEEVVKLLE  156 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             cCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            999999999999999999999999999999999999    9999999999999999999888775443

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=5.2e-27  Score=217.83  Aligned_cols=160  Identities=18%  Similarity=0.165  Sum_probs=135.8

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..|   ..|.||||+|+..|+.+   +|+++|++++.++.+|.||+|.|+..++.++++.|+ ..|
T Consensus        67 ~~v~~Ll~~Gadvn~~d---~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~g  142 (269)
T 4b93_B           67 KRLAKVPASGLGVNVTS---QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLL-DSN  142 (269)
T ss_dssp             --------CCCCTTCCC---TTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHCCCCCCCcC---CCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHH-HCC
Confidence            36789999999999988   56678899999999877   899999999999999999999999999999999999 889


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHH
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~  158 (389)
                      ++++.+|..|+||||+|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+..|+.++++.+.      +      
T Consensus       143 ~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad----vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll------~------  206 (269)
T 4b93_B          143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS----INASNNKGNTALHEAVIEKHVFVVELLL------L------  206 (269)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHHHHHHH------H------
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----CCccccCCCcHHHHHHHcCCHHHHHHHH------H------
Confidence            99999999999999999999999999999999999    9999999999999999999877662221      1      


Q ss_pred             HHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          159 ERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                             ....++.+|++|+||++++.++.
T Consensus       207 -------~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          207 -------HGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             -------TTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             -------CCCCCCCcCCCCCCHHHHHHhCC
Confidence                   12236789999999999987644

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.92  E-value=1.3e-25  Score=202.23  Aligned_cols=161  Identities=17%  Similarity=0.139  Sum_probs=117.4

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..+   ..+.||||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.|
T Consensus        54 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g  129 (231)
T 3aji_A           54 EIVEFLLQLGVPVNDKD---DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGG  129 (231)
T ss_dssp             HHHHHHHHTTCCSCCCC---TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHhCCCCCCcC---CCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            57777777777777666   45566677777777765   677777777777777778888887777777777777 667


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHH
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWY  158 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~  158 (389)
                      ++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+              
T Consensus       130 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~L--------------  191 (231)
T 3aji_A          130 ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS----TNIQDTEGNTPLHLACDEERVEEAKFL--------------  191 (231)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTTCHHHHHHH--------------
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC----ccccCCCCCCHHHHHHHCCCHHHHHHH--------------
Confidence            77777777777888888877777788877777777    777777778888887777665544111              


Q ss_pred             HHHHhhccchhhhhcccCCCChHHHHHhhhh
Q 016470          159 ERVEEVSMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       159 ~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                         .+  .....+.+|.+|+||++++.+.+.
T Consensus       192 ---l~--~ga~~~~~~~~g~t~l~~A~~~~~  217 (231)
T 3aji_A          192 ---VT--QGASIYIENKEEKTPLQVAKGGLG  217 (231)
T ss_dssp             ---HH--TTCCSCCCCTTSCCHHHHSCHHHH
T ss_pred             ---HH--CCCCCCCCCCCCCCHHHHHHhhHH
Confidence               11  122356789999999999876543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.92  E-value=8e-26  Score=207.22  Aligned_cols=182  Identities=13%  Similarity=0.129  Sum_probs=118.8

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++...  ...+.||||+|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|++..+
T Consensus        37 ~~v~~Ll~~g~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  114 (253)
T 1yyh_A           37 AVISDFIYQGASLHNQT--DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA  114 (253)
T ss_dssp             ---------------CC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT
T ss_pred             HHHHHHHHccCCccccc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            67888888888865431  245667788888888776   7888888888888888888888888888888888884444


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCC-------------
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKME-------------  145 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~-------------  145 (389)
                      .+++.+|.+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.             
T Consensus       115 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  190 (253)
T 1yyh_A          115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  190 (253)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC----TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            47888888888888888888888888888888887    8888888888888888877766664431             


Q ss_pred             CchhhhhHHhhHHHHHHhhc-cchhhhhcccCCCChHHHHHhhhh
Q 016470          146 GPALVLQEELLWYERVEEVS-MPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       146 ~~~~~l~~~l~~~~~v~~~~-~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                      ..++.........+.++.+. .....+.+|.+|+||++++.+.+.
T Consensus       191 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHHHHHHcCC
Confidence            11222222112222222211 223356788899999999877653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.92  E-value=8.3e-26  Score=209.14  Aligned_cols=119  Identities=15%  Similarity=0.174  Sum_probs=56.6

Q ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCC-CCcHHHHHHHcCChhhHHHHHhcCCccccccccccccc
Q 016470           47 ESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDE-GRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGG  125 (389)
Q Consensus        47 ~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G  125 (389)
                      ++.+|..|.||||+|+..|+.+++++|+ ++|++++.++.. |+||||+|+.+|+.+++++|+++|++    ++.+|.+|
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad----~~~~d~~g  225 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMVRLLR-DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD----PTARMYGG  225 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTS
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC----CcccccCC
Confidence            4445555556666666666666666555 445555555533 56666666666666666666666555    55556666


Q ss_pred             ccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhhh
Q 016470          126 NTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       126 ~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                      +||||+|+..++.++++.+.                   ......+.+|.+|.||++.+.....
T Consensus       226 ~tpL~~A~~~~~~~~v~~Ll-------------------~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          226 RTPLGSALLRPNPILARLLR-------------------AHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             CCHHHHHHTSSCHHHHHHHH-------------------HTTCCCCCCC---------------
T ss_pred             CCHHHHHHHcCCcHHHHHHH-------------------HcCCCcCcCCCcccccccccCCccc
Confidence            66666665555544431110                   1222356778888888887766543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.92  E-value=1.2e-25  Score=194.18  Aligned_cols=138  Identities=24%  Similarity=0.275  Sum_probs=123.9

Q ss_pred             hhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhh
Q 016470           27 KIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEI  103 (389)
Q Consensus        27 ~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~i  103 (389)
                      .|+.|+..|+.+   .|+++|+|+|.+|.+|+||||+|+..|+.++++.|+ ..|++++.+|.+|+||||+|+.+|+.++
T Consensus         7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll-~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLI-SKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-hcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            399999999988   899999999999999999999999999999999999 8899999999999999999999999999


Q ss_pred             HHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHH
Q 016470          104 FELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEEL  183 (389)
Q Consensus       104 v~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l  183 (389)
                      +++|+++|++    +|.+|.+|+||||+|+..++.++++.+.      +             ....++.+|++|+||+++
T Consensus        86 v~~Ll~~gad----vn~~d~~G~TpLh~A~~~g~~~~v~~Ll------~-------------~gad~~~~d~~G~TpL~~  142 (169)
T 4gpm_A           86 VKLLISKGAD----VNAKDSDGRTPLHHAAENGHKEVVKLLI------S-------------KGADVNTSDSDGRTPLDL  142 (169)
T ss_dssp             HHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH------H-------------TTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHCcCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHH------H-------------cCCCccccCCCCCCHHHH
Confidence            9999999999    9999999999999999999877662221      1             122357889999999999


Q ss_pred             HHhhh
Q 016470          184 FATAN  188 (389)
Q Consensus       184 ~~~~~  188 (389)
                      +.+.+
T Consensus       143 A~~~g  147 (169)
T 4gpm_A          143 AREHG  147 (169)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            98765

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.92  E-value=1.6e-25  Score=209.42  Aligned_cols=160  Identities=19%  Similarity=0.180  Sum_probs=136.7

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..+   ..+.||||.|+..|+.+   .|+++|+++|.+|..|.||||+|+..|+.+++++|+ ++|
T Consensus        54 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll-~~g  129 (299)
T 1s70_B           54 EEVLRLLERGADINYAN---VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI-SQG  129 (299)
T ss_dssp             HHHHHHHHHCCCTTCBC---TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCcccC---CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-hCC
Confidence            78999999999999887   56678899999999887   899999999999999999999999999999999999 677


Q ss_pred             CcccccC------------------------------------------------------------CCCCcHHHHHHHc
Q 016470           79 QAVEHID------------------------------------------------------------DEGRNILHVAIKY   98 (389)
Q Consensus        79 ~~~~~~d------------------------------------------------------------~~G~t~Lh~A~~~   98 (389)
                      ++++.+|                                                            ..|+||||+|+.+
T Consensus       130 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~  209 (299)
T 1s70_B          130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAK  209 (299)
T ss_dssp             CCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHC
Confidence            7776554                                                            3577889999999


Q ss_pred             CChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCC
Q 016470           99 RQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGF  178 (389)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~  178 (389)
                      |+.+++++|+++|++    +|.+|.+|+||||+|+..++.++++.+.      +             .....+.+|.+|+
T Consensus       210 g~~~~v~~Ll~~g~d----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll------~-------------~gad~~~~d~~g~  266 (299)
T 1s70_B          210 GYTEVLKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEACRILV------E-------------NLCDMEAVNKVGQ  266 (299)
T ss_dssp             TCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHH------H-------------TTCCTTCCCTTSC
T ss_pred             CcHHHHHHHHHcCCC----CCCcCCCCCcHHHHHHhcCCHHHHHHHH------H-------------cCCCCCCcCCCCC
Confidence            999999999999998    9999999999999999998876662211      1             1223578899999


Q ss_pred             ChHHHHHhhh
Q 016470          179 TPEELFATAN  188 (389)
Q Consensus       179 tp~~l~~~~~  188 (389)
                      ||++++.+..
T Consensus       267 t~l~~A~~~~  276 (299)
T 1s70_B          267 TAFDVADEDI  276 (299)
T ss_dssp             CTTTSCCSGG
T ss_pred             CHHHHHHHHH
Confidence            9999997654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.91  E-value=7.8e-25  Score=197.84  Aligned_cols=181  Identities=18%  Similarity=0.213  Sum_probs=142.0

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|++++..+   ..+.+|||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|++..+
T Consensus        25 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~  101 (237)
T 3b7b_A           25 DICHMLVQAGANIDTCS---EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQ  101 (237)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTC
T ss_pred             HHHHHHHHcCCCcCccC---CCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Confidence            78999999999988877   55667899999998877   8889999999999999999999999999999999995545


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCC------------
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG------------  146 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~------------  146 (389)
                      .+++..|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+..            
T Consensus       102 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  177 (237)
T 3b7b_A          102 MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD----INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHG  177 (237)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTC
T ss_pred             CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCC
Confidence            88889999999999999999999999999999988    88999999999999998887776654421            


Q ss_pred             -chhhhhHHhhHHHHHHhh-ccchhhhhcccCCCChHHHHHhhhh
Q 016470          147 -PALVLQEELLWYERVEEV-SMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       147 -~~~~l~~~l~~~~~v~~~-~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                       .++.........+.++.+ ......+.+|++|+||++++...+.
T Consensus       178 ~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred             CCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHH
Confidence             222222222222222222 2334467889999999999887654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.91  E-value=1.1e-24  Score=196.32  Aligned_cols=166  Identities=19%  Similarity=0.202  Sum_probs=138.0

Q ss_pred             HHHHHHHhC-CCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCC-----CCCcCCCCCHHHHHHHcCCHHHHHH
Q 016470            2 ELARFLIRR-DTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGE-----SSAIDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 eiv~~Ll~~-ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~-----n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      ++++.|+++ |+++|..+   ..+.||||.|+..|+.+   .|+++|+++     +.+|.+|.||||+|+..|+.+++++
T Consensus        17 ~~v~~Ll~~~g~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~   93 (232)
T 2rfa_A           17 QALSKLLKFEGCEVHQRG---AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA   93 (232)
T ss_dssp             HHHHHHHTTTCSCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCCCcccCC---CCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHH
Confidence            689999998 99999887   66778899999999987   889999987     6778899999999999999999999


Q ss_pred             HHHHCCCcccccCC-------------CCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCC
Q 016470           73 IFNVYPQAVEHIDD-------------EGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDY  139 (389)
Q Consensus        73 Ll~~~~~~~~~~d~-------------~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~  139 (389)
                      |+ ++|++++.++.             +|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+
T Consensus        94 Ll-~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~t~L~~A~~~~~~~  168 (232)
T 2rfa_A           94 LL-ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD----IRAQDSLGNTVLHILILQPNKT  168 (232)
T ss_dssp             HH-HTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHTCSCHH
T ss_pred             HH-hCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCChH
Confidence            99 77899888765             799999999999999999999999999    9999999999999999988765


Q ss_pred             ccccCCCchhhhhHHhhHHHHHHhhcc----chhhhhcccCCCChHHHHHhhh
Q 016470          140 VPEKMEGPALVLQEELLWYERVEEVSM----PHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       140 ~~~~l~~~~~~l~~~l~~~~~v~~~~~----~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      ++..+             .+...+...    ....+.+|.+|+||++++.+.+
T Consensus       169 ~~~~i-------------~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g  208 (232)
T 2rfa_A          169 FACQM-------------YNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEG  208 (232)
T ss_dssp             HHHHH-------------HHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HHHHH-------------HHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcC
Confidence            44100             011111110    1112578999999999998765

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.91  E-value=9.2e-25  Score=195.54  Aligned_cols=181  Identities=13%  Similarity=0.127  Sum_probs=114.4

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|++++...  +..+.||||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|++..+
T Consensus         5 ~~i~~Ll~~g~~~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~   82 (223)
T 2f8y_A            5 AVISDFIYQGASLHNQT--DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA   82 (223)
T ss_dssp             CCEETTEETTCCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTT
T ss_pred             HHHHHHHHcCCCccccc--CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            56677777777765431  144556677777777765   6677777777777777777777777777777777774444


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCC------------
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG------------  146 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~------------  146 (389)
                      .+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+..            
T Consensus        83 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  158 (223)
T 2f8y_A           83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD----VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  158 (223)
T ss_dssp             SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC----CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            46777777777777777777777777777777776    77777777777777777666655543311            


Q ss_pred             -chhhhhHHhhHHHHHHhhc-cchhhhhcccCCCChHHHHHhhh
Q 016470          147 -PALVLQEELLWYERVEEVS-MPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       147 -~~~~l~~~l~~~~~v~~~~-~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                       .++.........+.++.+. .....+.+|.+|.||++++.+.+
T Consensus       159 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  202 (223)
T 2f8y_A          159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERM  202 (223)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             cCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhc
Confidence             1111111111111121111 12235677888888888887654

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.91  E-value=7.8e-25  Score=188.20  Aligned_cols=133  Identities=23%  Similarity=0.262  Sum_probs=124.8

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +|++++|+++|+++|..+   ..+.+|||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++
T Consensus        27 ~~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~  102 (169)
T 2y1l_E           27 DDEVRILMANGADVNAED---ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KN  102 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHHCCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-Hc
Confidence            378999999999999887   56678899999999987   899999999999999999999999999999999999 78


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |++++.+|.+|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus       103 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~  162 (169)
T 2y1l_E          103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD----VNAQDKFGKTAFDISIDNGNEDLA  162 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHhCCHHHH
Confidence            999999999999999999999999999999999999    999999999999999999887665

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.91  E-value=3.6e-25  Score=198.72  Aligned_cols=163  Identities=18%  Similarity=0.141  Sum_probs=108.7

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcC--CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKG--IGESSAIDNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~g--a~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |++++|+++|++++........+.+|||.|+..|+.+   .|+++|  ++++.+|..|.||||+|+..|+.+++++|+ +
T Consensus        50 ~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~  128 (228)
T 2dzn_A           50 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI-E  128 (228)
T ss_dssp             HHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-H
T ss_pred             HHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHH-H
Confidence            5677777777444443312244556677777776655   666666  666777777777777777777777777777 5


Q ss_pred             CCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcC-CcccccccccccccccccccccccCCCCccccCCCchhhhhHHh
Q 016470           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQME-VPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEEL  155 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~-~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l  155 (389)
                      +|++++.+|..|+||||+|+.+|+.+++++|+++| ++    ++.+|.+|+||||+|+..++.++++.+      +    
T Consensus       129 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~~~~~~v~~L------l----  194 (228)
T 2dzn_A          129 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA----VNWQDKQGWTPLFHALAEGHGDAAVLL------V----  194 (228)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC----SCCCCTTSCCHHHHHHHTTCHHHHHHH------H----
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc----ccCcCCCCCCHHHHHHHcCCHHHHHHH------H----
Confidence            67777777777777777777777777777777776 65    677777777777777776655444111      0    


Q ss_pred             hHHHHHHhhccchhhhhcccCCCChHHHHHhh
Q 016470          156 LWYERVEEVSMPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       156 ~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                            +  ..+...+.+|++|+||++++.+.
T Consensus       195 ------~--~~ga~~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          195 ------E--KYGAEYDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             ------H--HHCCCSCCBCTTSCBGGGGCSST
T ss_pred             ------H--hcCCCCCccCCCCCcHHHHHHHH
Confidence                  0  11233678999999999998653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.91  E-value=6.7e-25  Score=193.23  Aligned_cols=166  Identities=13%  Similarity=0.089  Sum_probs=138.4

Q ss_pred             HHHHHHHhCCC-CCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDT-SWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga-~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +.++.|++++. ++|..+   ..+.||||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|++..
T Consensus        19 ~~v~~ll~~~~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~   95 (201)
T 3hra_A           19 KKVKEILQDTTYQVDEVD---TEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA   95 (201)
T ss_dssp             HHHHHHHTCTTCCTTCCC---TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            57788887775 888877   56678899999999887   899999999999999999999999999999999999888


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcC-CcccccccccccccccccccccccCCCCccccCCCchhhhhHHhh
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQME-VPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELL  156 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~-~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~  156 (389)
                      +.+++.+|..|+||||+|+.+|+.+++++|+++| ++    ++.+|.+|+||||+|+..++....            ...
T Consensus        96 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~----~~~~~~~g~t~L~~A~~~~~~~~~------------~~~  159 (201)
T 3hra_A           96 TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGRED----IDFQNDFGYTALIEAVGLREGNQL------------YQD  159 (201)
T ss_dssp             CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC----TTCCCTTSCCHHHHHHHSSCCSHH------------HHH
T ss_pred             CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC----cCCCCCCCCCHHHHHHHhccchhh------------HHH
Confidence            9999999999999999999999999999999998 77    999999999999999987752110            000


Q ss_pred             HHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          157 WYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       157 ~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      ..+...+  .....+.+|.+|.||++++.+.+
T Consensus       160 ~v~~Ll~--~ga~~~~~~~~g~t~l~~A~~~~  189 (201)
T 3hra_A          160 IVKLLME--NGADQSIKDNSGRTAMDYANQKG  189 (201)
T ss_dssp             HHHHHHH--TTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHH--CCCCCCccCCCCCCHHHHHHHcC
Confidence            0011111  12335788999999999998765

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=8.1e-25  Score=184.84  Aligned_cols=131  Identities=18%  Similarity=0.205  Sum_probs=121.7

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++. +   ..+.||||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++|
T Consensus        16 ~~v~~Ll~~g~~~~~-~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g   90 (153)
T 1awc_B           16 DEVRILMANGAPFTT-D---WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHG   90 (153)
T ss_dssp             HHHHHHHHHTCCCCC-C---TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-TTT
T ss_pred             HHHHHHHHcCCCCCc-C---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH-HcC
Confidence            789999999998762 3   45677899999999877   899999999999999999999999999999999999 789


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      ++++.+|.+|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        91 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~i~  149 (153)
T 1awc_B           91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999    999999999999999999887665

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.91  E-value=3.9e-24  Score=195.96  Aligned_cols=167  Identities=17%  Similarity=0.171  Sum_probs=132.5

Q ss_pred             HHHHHHhCCCCCcc----ccccccCCchhhhhhhcC---CCch---hhhhcCCCCCC-----------CcCCCCCHHHHH
Q 016470            3 LARFLIRRDTSWEI----TDSIQDQSKPKIHRYGAN---PNAS---SVDQKGIGESS-----------AIDNAETPLFLA   61 (389)
Q Consensus         3 iv~~Ll~~ga~vn~----~~~~~~~~~~~Lh~a~~~---~~~~---~Ll~~ga~~n~-----------~d~~G~tpLh~A   61 (389)
                      ++++|+++|+++|.    .+   ..+.||||+|+..   |+.+   .|+++|++++.           +|.+|.||||+|
T Consensus        21 ll~~l~~~g~~i~~~~~~~d---~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A   97 (256)
T 2etb_A           21 LLEYLRWNSKYLTDSAYTEG---STGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIA   97 (256)
T ss_dssp             HHHHHHHHTCCTTSGGGSBT---TTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHH
T ss_pred             HHHHHHHcCCCcccccccCC---CCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHH
Confidence            67888889999987    56   6677889999988   7766   89999988763           347899999999


Q ss_pred             HHcCCHHHHHHHHHHCCCcccccCCC-------------CCcHHHHHHHcCChhhHHHHHh---cCCccccccccccccc
Q 016470           62 TKSGCIEIVKEIFNVYPQAVEHIDDE-------------GRNILHVAIKYRQLEIFELVIQ---MEVPMRRLVRKIDNGG  125 (389)
Q Consensus        62 a~~g~~~~v~~Ll~~~~~~~~~~d~~-------------G~t~Lh~A~~~g~~~iv~~Ll~---~~~~~~~l~~~~d~~G  125 (389)
                      +..|+.+++++|+ ++|++++.+|..             |+||||+|+.+|+.+++++|++   +|++    +|.+|.+|
T Consensus        98 ~~~g~~~~v~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~----~n~~d~~g  172 (256)
T 2etb_A           98 IEKRSLQCVKLLV-ENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPAS----LEATDSLG  172 (256)
T ss_dssp             HHTTCHHHHHHHH-HTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC----TTCCCTTS
T ss_pred             HHcCCHHHHHHHH-HcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC----cCccCCCC
Confidence            9999999999999 779999999886             9999999999999999999999   8999    99999999


Q ss_pred             ccccccccc--cCCCC-------ccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhhh
Q 016470          126 NTLLHMTGI--KRSDY-------VPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       126 ~TpLhlA~~--~~~~~-------~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                      +||||+|+.  .++.+       +++.      .++.      ...-.......+.+|.+|+||++++.+.+.
T Consensus       173 ~TpLh~A~~~~~~~~~~~~~~~~iv~~------Ll~~------ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  233 (256)
T 2etb_A          173 NTVLHALVMIADNSPENSALVIHMYDG------LLQM------GARLCPTVQLEEISNHQGLTPLKLAAKEGK  233 (256)
T ss_dssp             CCHHHHHHHHCCSCHHHHHHHHHHHHH------HHHH------HHHHSTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcccCCchhhHHHHHHHHH------HHHc------CCCcccccccccccCCCCCCHHHHHHHhCC
Confidence            999999998  44433       2211      0110      000000001116789999999999987653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.91  E-value=3.5e-25  Score=200.52  Aligned_cols=136  Identities=14%  Similarity=0.047  Sum_probs=117.3

Q ss_pred             HHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCc
Q 016470            4 ARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQA   80 (389)
Q Consensus         4 v~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~   80 (389)
                      ++.|+++|++++..+..+..+.++||.|+..|+.+   .|+++|+++|.+|.+|+||||+|+..|+.+++++|+ +.|++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~ga~   79 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI-TAGAN   79 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCC
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HCCCC
Confidence            57889999999988877777888899999999987   889999999999999999999999999999999999 78999


Q ss_pred             ccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccc-cccccccccc--cccCCCCccccC
Q 016470           81 VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKID-NGGNTLLHMT--GIKRSDYVPEKM  144 (389)
Q Consensus        81 ~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d-~~G~TpLhlA--~~~~~~~~~~~l  144 (389)
                      ++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+| .+|+||||+|  +..++.++++.+
T Consensus        80 ~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~----~~~~~~~~g~tpL~~A~a~~~~~~~~v~~L  142 (229)
T 2vge_A           80 VNSPDSHGWTPLHCAASCNDTVICMALVQHGAA----IFATTLSDGATAFEKCDPYREGYADCATYL  142 (229)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCSSTTCCTGGGCCTTSTTHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----cccccCCCCCCHHHHHHHHhcChHHHHHHH
Confidence            999999999999999999999999999999999    89887 6999999999  888877777544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.91  E-value=2.6e-24  Score=185.13  Aligned_cols=132  Identities=14%  Similarity=0.124  Sum_probs=122.8

Q ss_pred             HHHHHHHhCCCC-CccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTS-WEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~-vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      ++++.|+++|.+ ++..+   ..+.||||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++
T Consensus        16 ~~v~~ll~~~~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~   91 (172)
T 3v30_A           16 DQLKEHLRKGDNLVNKPD---ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL-ER   91 (172)
T ss_dssp             HHHHHHHTTCSGGGGCCC---TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TT
T ss_pred             HHHHHHHHcCcccccCCC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHH-Hc
Confidence            689999999877 66666   56778899999999987   899999999999999999999999999999999999 88


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      +++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        92 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~~  151 (172)
T 3v30_A           92 DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGAD----LTTEADSGYTPMDLAVALGYRKVQ  151 (172)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHhCcHHHH
Confidence            999999999999999999999999999999999999    999999999999999999887766

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=1.7e-24  Score=184.16  Aligned_cols=132  Identities=15%  Similarity=0.225  Sum_probs=122.2

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..+   ..+.+|||.|+. |+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++|
T Consensus        19 ~~v~~Ll~~~~~~~~~~---~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g   93 (162)
T 1ihb_A           19 EQLTSLLQNNVNVNAQN---GFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EFQ   93 (162)
T ss_dssp             HHHHHHTTSCCCTTCCC---TTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHhCCCCccccC---ccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            78999999999998887   567788999988 8876   899999999999999999999999999999999999 789


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      ++++.+|.+|+||||+|+.+|+.+++++|+++|++   .++.+|.+|+||||+|+..++.+++
T Consensus        94 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~~g~t~l~~A~~~~~~~~~  153 (162)
T 1ihb_A           94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLARLYGRNEVV  153 (162)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC---CCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999986   2589999999999999999887766

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.91  E-value=1.1e-24  Score=197.10  Aligned_cols=180  Identities=14%  Similarity=0.109  Sum_probs=107.9

Q ss_pred             HHHHHHHh----CCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHH
Q 016470            2 ELARFLIR----RDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus         2 eiv~~Ll~----~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      |+++.|++    .|.++|..+   ..+.||||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.++++.|+
T Consensus        23 ~~v~~Ll~~~~~~~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll   99 (241)
T 1k1a_A           23 PAVHRLVNLFQQGGRELDIYN---NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL   99 (241)
T ss_dssp             HHHHHHHHHHHHTTCCSCCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCccc---ccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            45555554    566666665   44555677776666655   666667777666666777777777777777777666


Q ss_pred             HHCC---CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccc-cccccccccccccCCCCccccCC-----
Q 016470           75 NVYP---QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKID-NGGNTLLHMTGIKRSDYVPEKME-----  145 (389)
Q Consensus        75 ~~~~---~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d-~~G~TpLhlA~~~~~~~~~~~l~-----  145 (389)
                      +..+   .+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+| .+|+||||+|+..++.++++.+.     
T Consensus       100 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  175 (241)
T 1k1a_A          100 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD----IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN  175 (241)
T ss_dssp             HHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC----cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3322   15666666667777777777777777777766666    66666 56667777776666655553331     


Q ss_pred             --------CchhhhhHHhhHHHHHHhh-ccchhhhhcccCCCChHHHHHhhh
Q 016470          146 --------GPALVLQEELLWYERVEEV-SMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       146 --------~~~~~l~~~l~~~~~v~~~-~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                              ..++.........+.++.+ ......+.+|.+|+||++++.+.+
T Consensus       176 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~  227 (241)
T 1k1a_A          176 VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR  227 (241)
T ss_dssp             TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcC
Confidence                    1122221111111222211 123346788999999999987654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.91  E-value=3.5e-24  Score=198.68  Aligned_cols=129  Identities=14%  Similarity=0.203  Sum_probs=121.0

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      .+++++|+++|++++..+   ..+.+|+|.++..++.+   .|+++|+++|.+|..|+||||+|+..|+.+++++|+ ++
T Consensus        99 ~~~v~~Ll~~~a~~~~~~---~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll-~~  174 (269)
T 4b93_B           99 ADLIPLLLKHGANAGARN---ADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL-QH  174 (269)
T ss_dssp             TTHHHHHHHTTCCTTCCC---TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHH-HT
T ss_pred             HHHHHHHHhcCCCcCccC---CCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-HC
Confidence            478999999999999887   56678899999998876   899999999999999999999999999999999999 88


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCC
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~  137 (389)
                      |++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+++++
T Consensus       175 gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad----~~~~d~~G~TpL~~A~~~~~  230 (269)
T 4b93_B          175 GASINASNNKGNTALHEAVIEKHVFVVELLLLHGAS----VQVLNKRQRTAVDCAEQNSK  230 (269)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCSGGGSCTTCH
T ss_pred             CCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHhCCc
Confidence            999999999999999999999999999999999999    99999999999999987653

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.90  E-value=2.4e-24  Score=194.57  Aligned_cols=168  Identities=18%  Similarity=0.185  Sum_probs=134.6

Q ss_pred             CCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCC
Q 016470           13 SWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR   89 (389)
Q Consensus        13 ~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~   89 (389)
                      +++..+   ..+.+|||.|+..|+.+   .|+++|++++.+|.+|.||||+|+..|+.+++++|+ ++|++++.+|..|+
T Consensus         3 ~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~   78 (237)
T 3b7b_A            3 NFKMEH---QNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KAGALVDPKDAEGS   78 (237)
T ss_dssp             CCCCSS---CCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTTCCCCCCCTTSC
T ss_pred             Cccccc---CCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHH-hCCCCCCCCCCCCC
Confidence            445555   56678899999999987   899999999999999999999999999999999999 88999999999999


Q ss_pred             cHHHHHHHcCChhhHHHHHhcC-CcccccccccccccccccccccccCCCCccccCCC-------------chhhhhHHh
Q 016470           90 NILHVAIKYRQLEIFELVIQME-VPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG-------------PALVLQEEL  155 (389)
Q Consensus        90 t~Lh~A~~~g~~~iv~~Ll~~~-~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~-------------~~~~l~~~l  155 (389)
                      ||||+|+..|+.+++++|++++ .+    ++.+|..|.||||+|+..++.++++.+..             ..+......
T Consensus        79 t~L~~A~~~~~~~~~~~Ll~~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~  154 (237)
T 3b7b_A           79 TCLHLAAKKGHYEVVQYLLSNGQMD----VNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS  154 (237)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhCCCCC----cccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHC
Confidence            9999999999999999999998 66    89999999999999999888777654421             122222222


Q ss_pred             hHHHHHHhhc-cchhhhhcccCCCChHHHHHhhh
Q 016470          156 LWYERVEEVS-MPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       156 ~~~~~v~~~~-~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      ...+.++.+. .....+.+|.+|.||++++.+.+
T Consensus       155 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  188 (237)
T 3b7b_A          155 GCVDIAEILLAAKCDLHAVNIHGDSPLHIAAREN  188 (237)
T ss_dssp             CCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhC
Confidence            2222232221 23345778899999999987654

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.90  E-value=1.1e-24  Score=199.64  Aligned_cols=147  Identities=19%  Similarity=0.161  Sum_probs=100.7

Q ss_pred             chhhhhcCCCCCC-CcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCC-cc
Q 016470           37 ASSVDQKGIGESS-AIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEV-PM  114 (389)
Q Consensus        37 ~~~Ll~~ga~~n~-~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~-~~  114 (389)
                      ++.|+++|++++. .|.+|.||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+..|+.+++++|++++. + 
T Consensus        39 v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-  116 (253)
T 1yyh_A           39 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD-  116 (253)
T ss_dssp             -------------CCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC-
T ss_pred             HHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-
Confidence            3378888988855 4888999999999999999999999 7788999999999999999999999999999999876 5 


Q ss_pred             cccccccccccccccccccccCCCCccccCCC-------------chhhhhHHhhHHHHHHhhc-cchhhhhcccCCCCh
Q 016470          115 RRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG-------------PALVLQEELLWYERVEEVS-MPHFRNHRNNMGFTP  180 (389)
Q Consensus       115 ~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~-------------~~~~l~~~l~~~~~v~~~~-~~~~~~~~n~~g~tp  180 (389)
                         ++.+|.+|+||||+|+..++.++++.+..             ..+.........+.++.+. .....+.+|.+|.||
T Consensus       117 ---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  193 (253)
T 1yyh_A          117 ---LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  193 (253)
T ss_dssp             ---TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ---ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence               88889999999999998888877754421             2222222222222222221 233456788889999


Q ss_pred             HHHHHhhh
Q 016470          181 EELFATAN  188 (389)
Q Consensus       181 ~~l~~~~~  188 (389)
                      ++++...+
T Consensus       194 L~~A~~~~  201 (253)
T 1yyh_A          194 LFLAAREG  201 (253)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHCC
Confidence            99887654

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.90  E-value=7.9e-25  Score=202.53  Aligned_cols=160  Identities=20%  Similarity=0.180  Sum_probs=135.9

Q ss_pred             HHHHHHHhCCCC---CccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHH
Q 016470            2 ELARFLIRRDTS---WEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFN   75 (389)
Q Consensus         2 eiv~~Ll~~ga~---vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~   75 (389)
                      +++++|+++|++   +|.++   ..+.||||+|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ 
T Consensus        23 ~~v~~Ll~~g~~~~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-   98 (282)
T 1oy3_D           23 PFLDFLLGFSAGHEYLDLQN---DLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLL-   98 (282)
T ss_dssp             HHHHHHHHHHTTSGGGGCCC---TTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHS-
T ss_pred             HHHHHHHhcCCCcccccccC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhh-
Confidence            789999999998   55555   66778899999999877   899999999999999999999999999999999999 


Q ss_pred             HCCC-----------------------------------------------cccccCCCCCcHHHHHHHcCChhhHHHHH
Q 016470           76 VYPQ-----------------------------------------------AVEHIDDEGRNILHVAIKYRQLEIFELVI  108 (389)
Q Consensus        76 ~~~~-----------------------------------------------~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll  108 (389)
                      ..++                                               +++.+|..|+||||+|+.+|+.+++++|+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  178 (282)
T 1oy3_D           99 QPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLR  178 (282)
T ss_dssp             SSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             ccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHH
Confidence            5443                                               36778899999999999999999999999


Q ss_pred             hcCCccccccccccc-ccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhh
Q 016470          109 QMEVPMRRLVRKIDN-GGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       109 ~~~~~~~~l~~~~d~-~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                      ++|++    ++.+|. .|+||||+|+..++.++++.+.      +             ....++.+|.+|+||++++...
T Consensus       179 ~~g~~----~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll------~-------------~gad~~~~d~~g~tpL~~A~~~  235 (282)
T 1oy3_D          179 DAGAD----LNKPEPTCGRTPLHLAVEAQAASVLELLL------K-------------AGADPTARMYGGRTPLGSALLR  235 (282)
T ss_dssp             HHTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHH------H-------------TTCCTTCCCTTSCCHHHHHHTS
T ss_pred             HcCCC----CCCCCCCCCcCHHHHHHHcCCHHHHHHHH------H-------------cCCCCcccccCCCCHHHHHHHc
Confidence            99999    898885 4999999999998876662221      1             1223578899999999999876


Q ss_pred             h
Q 016470          188 N  188 (389)
Q Consensus       188 ~  188 (389)
                      +
T Consensus       236 ~  236 (282)
T 1oy3_D          236 P  236 (282)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.90  E-value=9.1e-25  Score=195.57  Aligned_cols=132  Identities=16%  Similarity=0.224  Sum_probs=74.2

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCC-CCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGI-GESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga-~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      |++++|+++|++++..+   ..+.+|||.|+..|+.+   .|+++|. +++.+|..|.||||+|+..|+.++++.|+ ++
T Consensus        39 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~  114 (223)
T 2f8y_A           39 DAAKRLLEASADANIQD---NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NS  114 (223)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHcCCCCCCcC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH-Hc
Confidence            45555555555555544   33444555555555544   4555544 55555555555555555555555555555 45


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      +++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus       115 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v  174 (223)
T 2f8y_A          115 HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN----KDMQNNREETPLFLAAREGSYETA  174 (223)
T ss_dssp             TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             CCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCcCHHHHHHHcCCHHHH
Confidence            555555555555555555555555555555555555    555555555555555555554444

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.90  E-value=6.8e-24  Score=198.14  Aligned_cols=177  Identities=17%  Similarity=0.087  Sum_probs=140.8

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..+   ..+.||||+|+..|+.+   .|+++|++++.+|.+|.||||+|+..|+.+++++|+ +++
T Consensus        73 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g  148 (285)
T 3d9h_A           73 LSLRNLISQGWAVNIIT---ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL-QHG  148 (285)
T ss_dssp             HHHHHHHHTTCCSCEEC---TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHCCCCCCCcC---CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHH-HCC
Confidence            78999999999999888   56778899999999877   889999999999999999999999999999999999 778


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCC------------
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG------------  146 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~------------  146 (389)
                      ++++.. .+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+..            
T Consensus       149 ~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~g~  223 (285)
T 3d9h_A          149 ASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGN----IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQD  223 (285)
T ss_dssp             CCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCC----TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTB
T ss_pred             CCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCCCCCCC
Confidence            887654 4599999999999999999999999998    99999999999999999888777654421            


Q ss_pred             chhhhhHHhhHHHHHHhhc-cchhhhhcccCCCChHHHHHhh
Q 016470          147 PALVLQEELLWYERVEEVS-MPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       147 ~~~~l~~~l~~~~~v~~~~-~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                      .++.........+.++.+. .....+.+|++|+||++++.+.
T Consensus       224 t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~  265 (285)
T 3d9h_A          224 SPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPE  265 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence            1222221111122222211 2344678888999999988743

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.90  E-value=2e-24  Score=189.34  Aligned_cols=133  Identities=20%  Similarity=0.115  Sum_probs=122.8

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      .+++++|+++|++++..+   ..+.||||+|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++
T Consensus        48 ~~~v~~Ll~~~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~  123 (192)
T 2rfm_A           48 ENAIDKLVENFDKLEDKD---IEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL-EH  123 (192)
T ss_dssp             GGGHHHHHHHHCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHHhcccccccc---ccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH-HC
Confidence            378999999999988877   55678899999999877   889999999999999999999999999999999999 78


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus       124 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~v  183 (192)
T 2rfm_A          124 GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGAD----ISARDLTGLTAEASARIFGRQEVI  183 (192)
T ss_dssp             TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHhCcHHHH
Confidence            999999999999999999999999999999999999    999999999999999999887666

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=3.1e-25  Score=211.50  Aligned_cols=164  Identities=15%  Similarity=0.131  Sum_probs=133.3

Q ss_pred             HHHHHHHhCCCCCcc-ccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCC---HHHHHHHH
Q 016470            2 ELARFLIRRDTSWEI-TDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGC---IEIVKEIF   74 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~-~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~---~~~v~~Ll   74 (389)
                      +++++|+++|+++|. .+   ..+.||||+|+..|+.+   +|+++|+++|.+|.+|+||||+|+..|+   .++++.|+
T Consensus       111 ~~~~~l~~~g~dvn~~~d---~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll  187 (327)
T 1sw6_A          111 EVNDAFPNTQLNLNIPVD---EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALL  187 (327)
T ss_dssp             HHHHHCTTSCCCSCSCCS---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHH
T ss_pred             HHHHHHHhcCCCcccccC---CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHH
Confidence            578899999999998 67   66778899999999977   8999999999999999999999999999   68888888


Q ss_pred             HHCCCcccccCCCCCcHHHHHHH----cCChhhHHHHHhcCC--------------------ccc---------------
Q 016470           75 NVYPQAVEHIDDEGRNILHVAIK----YRQLEIFELVIQMEV--------------------PMR---------------  115 (389)
Q Consensus        75 ~~~~~~~~~~d~~G~t~Lh~A~~----~g~~~iv~~Ll~~~~--------------------~~~---------------  115 (389)
                      +...++++.+|.+|+||||+|+.    .|+.+++++|++.+.                    +..               
T Consensus       188 ~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~  267 (327)
T 1sw6_A          188 DYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD  267 (327)
T ss_dssp             HHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS
T ss_pred             HhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH
Confidence            66668899999999999999999    899999999998732                    200               


Q ss_pred             ------ccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhh
Q 016470          116 ------RLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       116 ------~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~  187 (389)
                            ..+|.+|.+|+||||+|+..++.++++.+.                   .....++.+|++|+||++++.+.
T Consensus       268 ~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll-------------------~~Gad~~~~d~~G~TpL~~A~~~  326 (327)
T 1sw6_A          268 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL-------------------DYGADPFIANKSGLRPVDFGAGL  326 (327)
T ss_dssp             HHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHH-------------------HTTCCTTCCCTTSCCGGGGTCC-
T ss_pred             HHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-------------------HcCCCCcccCCCCCCHHHHHHhc
Confidence                  026778888888888888887766552211                   11233678999999999988653

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.90  E-value=2.9e-24  Score=183.86  Aligned_cols=132  Identities=16%  Similarity=0.127  Sum_probs=124.1

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.|+++|+++|..+   ..+.||||+|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++|
T Consensus        17 ~~v~~ll~~~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g   92 (167)
T 3v31_A           17 LYLATRIEQENVINHTD---EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL-DCG   92 (167)
T ss_dssp             HHHHHHHHHSSCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HHT
T ss_pred             HHHHHHHHcCCCcCCCC---CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH-HCC
Confidence            78999999999988887   56778899999999887   889999999999999999999999999999999999 778


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      ++++.+|.+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        93 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~  151 (167)
T 3v31_A           93 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGAD----PTIETDSGYNSMDLAVALGYRSVQ  151 (167)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCcHHHH
Confidence            99999999999999999999999999999999999    999999999999999999887766

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.90  E-value=3.8e-24  Score=203.85  Aligned_cols=178  Identities=15%  Similarity=0.116  Sum_probs=107.0

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..+   ..+.||||+|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++|
T Consensus        72 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g  147 (351)
T 3utm_A           72 RIVQLLLQHGADVHAKD---KGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL-SHG  147 (351)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCCccC---CCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            57777788777777766   45566678777777766   677777777777777778888887777777777777 445


Q ss_pred             CcccccC------------------------------------------------------CCCCcHHHHHHHc---CCh
Q 016470           79 QAVEHID------------------------------------------------------DEGRNILHVAIKY---RQL  101 (389)
Q Consensus        79 ~~~~~~d------------------------------------------------------~~G~t~Lh~A~~~---g~~  101 (389)
                      ++++..|                                                      ..|+||||+|+..   ++.
T Consensus       148 ~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~  227 (351)
T 3utm_A          148 ADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRK  227 (351)
T ss_dssp             CCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHH
T ss_pred             CCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHH
Confidence            5444322                                                      3344555555555   224


Q ss_pred             hhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCC-------------chhhhhHHhhHHHHHHhhc-cc
Q 016470          102 EIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG-------------PALVLQEELLWYERVEEVS-MP  167 (389)
Q Consensus       102 ~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~-------------~~~~l~~~l~~~~~v~~~~-~~  167 (389)
                      +++++|+++|++    ++.+|.+|+||||+|+..++.++++.+..             .++.........+.++-+. ..
T Consensus       228 ~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g  303 (351)
T 3utm_A          228 QVAELLLRKGAN----VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYG  303 (351)
T ss_dssp             HHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCC----cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            555555555555    66667777777777776666655543311             1122111111112222111 22


Q ss_pred             hhhhhcccCCCChHHHHHhh
Q 016470          168 HFRNHRNNMGFTPEELFATA  187 (389)
Q Consensus       168 ~~~~~~n~~g~tp~~l~~~~  187 (389)
                      ..++.+|.+|+||++++.+.
T Consensus       304 ad~~~~~~~g~tal~~a~~~  323 (351)
T 3utm_A          304 SDPSIISLQGFTAAQMGNEA  323 (351)
T ss_dssp             CCTTCCCTTSCCHHHHSCHH
T ss_pred             CCCCCcCCCCCChhhhhhHH
Confidence            33567888888888887443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=7.7e-24  Score=209.01  Aligned_cols=180  Identities=17%  Similarity=0.131  Sum_probs=91.7

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..+   ..+.+|||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ..+
T Consensus       193 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~  268 (437)
T 1n11_A          193 DIVKLLLPRGGSPHSPA---WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLL-SKQ  268 (437)
T ss_dssp             HHHHHHGGGTCCSCCCC---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTT
T ss_pred             HHHHHHHhCCCCCCCcC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH-hcC
Confidence            45555555555554444   23344455555555544   455555555555555555555555555555555555 445


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCC------------
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG------------  146 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~------------  146 (389)
                      ++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|..|+||||+|+..++.++++.+..            
T Consensus       269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g  344 (437)
T 1n11_A          269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM----VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLG  344 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC----TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc----CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCC
Confidence            55555555555555555555555555555555555    55555555555555555555444432211            


Q ss_pred             -chhhhhHHhhHHHHHHhh-ccchhhhhcccCCCChHHHHHhhhh
Q 016470          147 -PALVLQEELLWYERVEEV-SMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       147 -~~~~l~~~l~~~~~v~~~-~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                       .++.........+-++.+ .....++.+|.+|+||++++.+.+.
T Consensus       345 ~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~  389 (437)
T 1n11_A          345 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGY  389 (437)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCc
Confidence             111111111111111111 1223357788999999999877653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.90  E-value=3.5e-24  Score=187.78  Aligned_cols=143  Identities=15%  Similarity=0.075  Sum_probs=126.0

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHc
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      ..+.||||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+.+
T Consensus        33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~  111 (192)
T 2rfm_A           33 SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL-SKGSNVNTKDFSGKTPLMWSIIF  111 (192)
T ss_dssp             TTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHc
Confidence            56778899999999877   889999999999999999999999999999999999 67899999999999999999999


Q ss_pred             CChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCC
Q 016470           99 RQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGF  178 (389)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~  178 (389)
                      |+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.                 +  .....+.+|.+|.
T Consensus       112 ~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----------------~--~ga~~~~~~~~g~  168 (192)
T 2rfm_A          112 GYSEMSYFLLEHGAN----VNDRNLEGETPLIVASKYGRSEIVKKLL-----------------E--LGADISARDLTGL  168 (192)
T ss_dssp             TCHHHHHHHHHTTCC----SSCCCTTCCCHHHHHHHHTCHHHHHHHH-----------------H--TTCCTTCBCTTSC
T ss_pred             CCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHH-----------------H--CCCCCCCcCCCCC
Confidence            999999999999999    9999999999999999988776652211                 1  1223567899999


Q ss_pred             ChHHHHHhhh
Q 016470          179 TPEELFATAN  188 (389)
Q Consensus       179 tp~~l~~~~~  188 (389)
                      ||++++...+
T Consensus       169 t~l~~A~~~~  178 (192)
T 2rfm_A          169 TAEASARIFG  178 (192)
T ss_dssp             BHHHHHHHTT
T ss_pred             CHHHHHHHhC
Confidence            9999998765

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=5.9e-24  Score=192.37  Aligned_cols=160  Identities=19%  Similarity=0.198  Sum_probs=120.6

Q ss_pred             HHHHHHHhCCC----CCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHH
Q 016470            2 ELARFLIRRDT----SWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus         2 eiv~~Ll~~ga----~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      +++++|++.+.    ++|..+   ..+.||||+|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+
T Consensus        22 ~~v~~Ll~~~~~~~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   98 (236)
T 1ikn_D           22 ALTMEVIRQVKGDLAFLNFQN---NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLT   98 (236)
T ss_dssp             SSSSCCCC-----CCCCCCCC---TTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHHhhccHHHhhccC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            45566666654    567666   55667799888888876   788888888888888999999999999999999888


Q ss_pred             HHCCCc------ccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccc-ccccccccccccCCCCccccCCCc
Q 016470           75 NVYPQA------VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDN-GGNTLLHMTGIKRSDYVPEKMEGP  147 (389)
Q Consensus        75 ~~~~~~------~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~-~G~TpLhlA~~~~~~~~~~~l~~~  147 (389)
                       ..+.+      ++..|..|+||||+|+.+|+.+++++|+++|++    ++.+|. +|+||||+|+..++.++++.+.. 
T Consensus        99 -~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~-  172 (236)
T 1ikn_D           99 -QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD----VNAQEPCNGRTALHLAVDLQNPDLVSLLLK-  172 (236)
T ss_dssp             -HSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHHT-
T ss_pred             -hcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH-
Confidence             44433      567788889999999999999999999988888    888887 88999999988887665522211 


Q ss_pred             hhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          148 ALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       148 ~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                                        .....+.+|.+|.||++++...+
T Consensus       173 ------------------~ga~~~~~~~~g~tpl~~A~~~~  195 (236)
T 1ikn_D          173 ------------------CGADVNRVTYQGYSPYQLTWGRP  195 (236)
T ss_dssp             ------------------TTCCSCCCCTTCCCGGGGCTTSS
T ss_pred             ------------------cCCCCCcccCCCCCHHHHHHccC
Confidence                              12225677888888888876653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.89  E-value=1.1e-23  Score=178.02  Aligned_cols=130  Identities=14%  Similarity=0.166  Sum_probs=119.2

Q ss_pred             HHHHHHHhC-CCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRR-DTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~-ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      ++++.|+++ +.+++..+   ..+.||||. +..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++
T Consensus        16 ~~v~~ll~~~~~~~~~~~---~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~   90 (156)
T 1bd8_A           16 QEVRRLLHRELVHPDALN---RFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-EH   90 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCC---TTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHhhCcCccccC---CCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-Hc
Confidence            688999988 34777777   567788999 8888877   899999999999999999999999999999999999 78


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |++++.+|.+|+||||+|+.+|+.+++++|+++ ++    ++.+|.+|+||||+|+..++.+++
T Consensus        91 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~----~~~~~~~g~t~l~~A~~~~~~~~v  149 (156)
T 1bd8_A           91 GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD----LHRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC----TTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC----CCCcCCCCCCHHHHHHHcCcHHHH
Confidence            999999999999999999999999999999998 88    999999999999999999887766

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=1.3e-23  Score=182.15  Aligned_cols=132  Identities=17%  Similarity=0.234  Sum_probs=120.7

Q ss_pred             HHHHHHHhC-CCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRR-DTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~-ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++ +.+++..+   ..+.+|||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++
T Consensus        19 ~~v~~ll~~~~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~   94 (179)
T 3f6q_A           19 VAVRLWLDNTENDLNQGD---DHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL-QY   94 (179)
T ss_dssp             HHHHHHHHCTTSCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHhcCcccccccC---CCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-Hc
Confidence            688999988 57777777   56778899999999877   899999999999999999999999999999999999 78


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |++++.+|.+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++.
T Consensus        95 g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~~  154 (179)
T 3f6q_A           95 KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGAL----VSICNKYGEMPVDKAKAPLRELLR  154 (179)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SSBCCTTSCCGGGGSCHHHHHHHH
T ss_pred             CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----cchhccCCCCcHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999    999999999999999886654443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.89  E-value=1.6e-23  Score=178.90  Aligned_cols=131  Identities=19%  Similarity=0.134  Sum_probs=117.5

Q ss_pred             HHHHHHHhC-CCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRR-DTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~-ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      ++++.|++. +.+++..+   ..+.||||.|+..|+.+   .|+++|++++.+|.+|.||||+|+..|+.+++++|+ ++
T Consensus        22 ~~v~~ll~~~~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~   97 (165)
T 3twr_A           22 ETVKKLCTVQSVNCRDIE---GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV-KH   97 (165)
T ss_dssp             HHHHHHCCTTTTTCCCTT---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHcCCCCccccc---cCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHH-hC
Confidence            688999985 45555444   45667899999999977   899999999999999999999999999999999999 88


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|.. ++.+++
T Consensus        98 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~a~~-~~~~i~  156 (165)
T 3twr_A           98 GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD----PTKKNRDGNTPLDLVKD-GDTDIQ  156 (165)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCTGGGSCT-TCHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCChhHhHhc-CChHHH
Confidence            999999999999999999999999999999999999    99999999999999877 655555

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.89  E-value=1.9e-24  Score=195.62  Aligned_cols=160  Identities=16%  Similarity=0.214  Sum_probs=136.1

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCC------CCCCcCCCCCHHHHHHHcCCHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIG------ESSAIDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~------~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +++++|+++|++++..+   ..+.+|||+|+..|+.+   .|+++|++      ++..|..|.||||+|+..|+.+++++
T Consensus        59 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~  135 (236)
T 1ikn_D           59 EIAEALLGAGCDPELRD---FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL  135 (236)
T ss_dssp             HHHHCCCSCCCCSCCCC---TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcC---CCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHH
Confidence            78999999999999888   56678899999999877   88899876      46788899999999999999999999


Q ss_pred             HHHHCCCcccccCC-CCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhh
Q 016470           73 IFNVYPQAVEHIDD-EGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVL  151 (389)
Q Consensus        73 Ll~~~~~~~~~~d~-~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l  151 (389)
                      |+ ++|++++.+|. .|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.      
T Consensus       136 Ll-~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~~~~Ll------  204 (236)
T 1ikn_D          136 LV-SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQQLG------  204 (236)
T ss_dssp             HH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHHHHHH------
T ss_pred             HH-HcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCcccCCCCCHHHHHHccCchHHHHHHH------
Confidence            99 77899999997 999999999999999999999999999    9999999999999999998877663221      


Q ss_pred             hHHhhHHHHHHhhccchhhhhcccCCCChHHHHHh
Q 016470          152 QEELLWYERVEEVSMPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       152 ~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~  186 (389)
                                 +.........+|.+|.||.+...+
T Consensus       205 -----------~~ga~~~~~~~~~~~~~~~~~~~~  228 (236)
T 1ikn_D          205 -----------QLTLENLQMLPESEDEESYDTESE  228 (236)
T ss_dssp             -----------TTSCGGGSSCCCCCTTTCCCCC--
T ss_pred             -----------HcchhhhhcCCccchHHHHhhhcc
Confidence                       122222345788899999876543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.89  E-value=1.7e-23  Score=179.11  Aligned_cols=141  Identities=15%  Similarity=0.133  Sum_probs=124.3

Q ss_pred             CchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCC
Q 016470           24 SKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        24 ~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  100 (389)
                      +.+|||.|+..|+.+   .|++.|.+++.+|..|.||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+.+|+
T Consensus         3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLL-QNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            456799999999988   788999999999999999999999999999999999 7799999999999999999999999


Q ss_pred             hhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCCh
Q 016470          101 LEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTP  180 (389)
Q Consensus       101 ~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp  180 (389)
                      .+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.                 +  .....+.+|.+|.||
T Consensus        82 ~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----------------~--~g~~~~~~~~~g~t~  138 (167)
T 3v31_A           82 TDIVKMLLDCGVD----VNEYDWNGGTPLLYAVHGNHVKCVKMLL-----------------E--SGADPTIETDSGYNS  138 (167)
T ss_dssp             HHHHHHHHHHTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH-----------------H--TTCCTTCCCTTSCCH
T ss_pred             HHHHHHHHHCCCC----CCcCCCCCCCHHHHHHHcCCHHHHHHHH-----------------H--cCCCCCCcCCCCCCH
Confidence            9999999999999    9999999999999999988766652211                 1  122356789999999


Q ss_pred             HHHHHhhh
Q 016470          181 EELFATAN  188 (389)
Q Consensus       181 ~~l~~~~~  188 (389)
                      ++++.+.+
T Consensus       139 l~~A~~~~  146 (167)
T 3v31_A          139 MDLAVALG  146 (167)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHcC
Confidence            99998764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.5e-23  Score=173.63  Aligned_cols=125  Identities=15%  Similarity=0.127  Sum_probs=110.7

Q ss_pred             CCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCC
Q 016470           11 DTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDE   87 (389)
Q Consensus        11 ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   87 (389)
                      |+|+ .+|   ..+.||||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++|++++.+|..
T Consensus         1 G~d~-~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~   75 (137)
T 3c5r_A            1 GIDP-FTN---HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHKALVNTTGYQ   75 (137)
T ss_dssp             ---C-CCC---TTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCGG
T ss_pred             CCCC-CcC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCcccCcCCC
Confidence            5666 344   56678899999999877   889999999999999999999999999999999999 789999999999


Q ss_pred             CCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccC
Q 016470           88 GRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus        88 G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l  144 (389)
                      |+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..+..++++.+
T Consensus        76 g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~l~~l  128 (137)
T 3c5r_A           76 NDSPLHDAAKNGHVDIVKLLLSYGAS----RNAVNIFGLRPVDYTDDESMKSLLLLP  128 (137)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence            99999999999999999999999999    999999999999999987766555433

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.89  E-value=1.6e-23  Score=201.96  Aligned_cols=178  Identities=19%  Similarity=0.124  Sum_probs=101.8

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC-
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY-   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-   77 (389)
                      +++++|+++|+++|..+   ..+.||||+|+..|+.+   +|+++|++++.  .+|.||||+|+..|+.+++++|++.. 
T Consensus        34 ~~v~~Ll~~g~~~~~~d---~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~v~~Ll~~~~  108 (364)
T 3ljn_A           34 DEVRRLIETGVSPTIQN---RFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDLVVALVEGAK  108 (364)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCccccC---CCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHHHHHHHHhcc
Confidence            68899999999988877   55667799998888876   78888886644  34555555555555555555555220 


Q ss_pred             --CCcccc-----------------cCCCCCcHHHHHHHcC--ChhhHHHHHhcCCcccccccccccccccccccccccC
Q 016470           78 --PQAVEH-----------------IDDEGRNILHVAIKYR--QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus        78 --~~~~~~-----------------~d~~G~t~Lh~A~~~g--~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~  136 (389)
                        +.+++.                 +|.+|+||||+|+..|  +.+++++|+++|++    ++.+|.+|+||||+|+..+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~----~~~~d~~g~t~L~~A~~~g  184 (364)
T 3ljn_A          109 ERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS----PTAKDKADETPLMRAMEFR  184 (364)
T ss_dssp             HHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC----TTCCCTTSCCHHHHHHHTT
T ss_pred             ccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHcC
Confidence              333333                 4455555555555555  55555555555555    5555555555555555554


Q ss_pred             CCCccccCCC------------------chhhhhHHhhHHHHHHhh-ccchhhhhcccCCCChHHHHHhhh
Q 016470          137 SDYVPEKMEG------------------PALVLQEELLWYERVEEV-SMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       137 ~~~~~~~l~~------------------~~~~l~~~l~~~~~v~~~-~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      +.++++.+..                  ..+.........+.++.+ .....++.+|.+|.||++++...+
T Consensus       185 ~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g  255 (364)
T 3ljn_A          185 NREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAA  255 (364)
T ss_dssp             CHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTC
T ss_pred             CHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhC
Confidence            4443322210                  111111111111122211 123346788999999999998765

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.89  E-value=3.1e-23  Score=191.52  Aligned_cols=179  Identities=15%  Similarity=0.111  Sum_probs=134.3

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|++++..+   ..+.+|||+|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ +.+
T Consensus        53 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g  128 (285)
T 1wdy_A           53 DIVELLLRHGADPVLRK---KNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLY-KRG  128 (285)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCcccC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHH-HhC
Confidence            68889999998888777   55667799888888876   788889999888888999999999999999999888 777


Q ss_pred             Cccccc----------CCCCCcHHHHHHHcCChhhHHHHHhc-CCcccccccccccccccccccccccCC----CCcccc
Q 016470           79 QAVEHI----------DDEGRNILHVAIKYRQLEIFELVIQM-EVPMRRLVRKIDNGGNTLLHMTGIKRS----DYVPEK  143 (389)
Q Consensus        79 ~~~~~~----------d~~G~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~l~~~~d~~G~TpLhlA~~~~~----~~~~~~  143 (389)
                      ++++..          |..|.||||.|+..|+.+++++|+++ |++    ++.+|.+|+||||+|+..++    .++++.
T Consensus       129 ~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~  204 (285)
T 1wdy_A          129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD----VNACDNMGRNALIHALLSSDDSDVEAITHL  204 (285)
T ss_dssp             CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC----TTCCCTTSCCHHHHHHHCSCTTTHHHHHHH
T ss_pred             CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC----CCccCCCCCCHHHHHHHccccchHHHHHHH
Confidence            777776          77788999999999999999988887 777    88888888888888887776    333322


Q ss_pred             C-------------CCchhhhhHHhhHHHHHHhhc--cchhhhhcccCCCChHHHHHhhh
Q 016470          144 M-------------EGPALVLQEELLWYERVEEVS--MPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       144 l-------------~~~~~~l~~~l~~~~~v~~~~--~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      +             ...++.........+.++.+.  .+...+.+|.+|+||++++.+.+
T Consensus       205 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~  264 (285)
T 1wdy_A          205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             HHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcC
Confidence            2             112233222222223333222  34446788999999999998765

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.89  E-value=2.1e-23  Score=187.18  Aligned_cols=161  Identities=20%  Similarity=0.225  Sum_probs=136.3

Q ss_pred             HHHHHHHhCCCCCcc-ccccccCCchhhhhhhcCCCch---hhhhcC--CCCCC-CcCCCCCHHHHHHHcCCHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEI-TDSIQDQSKPKIHRYGANPNAS---SVDQKG--IGESS-AIDNAETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~-~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~g--a~~n~-~d~~G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      ++++.|+++|.+++. .+   ..+.||||+|+..|+.+   .|+++|  .+++. +|..|.||||+|+..|+.+++++|+
T Consensus        16 ~~v~~Ll~~~~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll   92 (228)
T 2dzn_A           16 FKVQELLHSKPSLLLQKD---QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY   92 (228)
T ss_dssp             HHHHHHHHHCGGGTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHhcCccccccCC---CCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            789999999987543 44   56778899999999877   889999  56666 7889999999999999999999999


Q ss_pred             HHCC--CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhh
Q 016470           75 NVYP--QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQ  152 (389)
Q Consensus        75 ~~~~--~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~  152 (389)
                       +.|  .+++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+...     
T Consensus        93 -~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----  162 (228)
T 2dzn_A           93 -DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS----VRIKDKFNQIPLHRAASVGSLKLIELLCGL-----  162 (228)
T ss_dssp             -SSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTTCHHHHHHHHTT-----
T ss_pred             -hCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC----ccccCCCCCCHHHHHHHcCCHHHHHHHHhc-----
Confidence             666  88999999999999999999999999999999999    999999999999999998876665222110     


Q ss_pred             HHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          153 EELLWYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       153 ~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                                   .....+.+|.+|.||++++...+
T Consensus       163 -------------g~~~~~~~d~~g~t~L~~A~~~~  185 (228)
T 2dzn_A          163 -------------GKSAVNWQDKQGWTPLFHALAEG  185 (228)
T ss_dssp             -------------TCCCSCCCCTTSCCHHHHHHHTT
T ss_pred             -------------CcccccCcCCCCCCHHHHHHHcC
Confidence                         11235678999999999988764

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.88  E-value=6.3e-24  Score=175.95  Aligned_cols=122  Identities=9%  Similarity=0.092  Sum_probs=113.0

Q ss_pred             CCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCC
Q 016470           11 DTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDE   87 (389)
Q Consensus        11 ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~   87 (389)
                      ++++|..+   ..+.+|||.|+..|+.+   .|+++|++++.+|..|+||||+|+. |+.+++++|+ ++|++++.+|..
T Consensus         2 ~~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll-~~g~~~~~~~~~   76 (136)
T 1d9s_A            2 SPGIHMLG---GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL-LHGAEPNCADPA   76 (136)
T ss_dssp             CCCCSCCC---CCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHH-HHTCCSSCCBTT
T ss_pred             CCCccCCC---CCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHH-HCCCCCCCcCCC
Confidence            46777777   56778899999999987   8899999999999999999999999 9999999999 778999999999


Q ss_pred             -CCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           88 -GRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        88 -G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                       |+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~~~~~~~  127 (136)
T 1d9s_A           77 TLTRPVHDAAREGFLDTLVVLHRAGAR----LDVCDAWGRLPVDLAEEQGHRDIA  127 (136)
T ss_dssp             TTBCHHHHHHHHTCHHHHHHHHHTCCC----CCCCSSSSSCHHHHHHHHTCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHHHHcCCHHHH
Confidence             99999999999999999999999999    999999999999999998876665

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.88  E-value=3.3e-23  Score=187.29  Aligned_cols=166  Identities=14%  Similarity=0.079  Sum_probs=130.2

Q ss_pred             cCCchhhhhhhcCCCch---hhhh----cCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHH
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQ----KGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHV   94 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~----~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~   94 (389)
                      +.+.||||.|+..|+.+   .|++    .|++++.+|..|.||||+|+..|+.+++++|+ +.|++++.+|..|+||||+
T Consensus         7 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~   85 (241)
T 1k1a_A            7 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV-TAGASPMALDRHGQTAAHL   85 (241)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHH-HcCCCccccCCCCCCHHHH
Confidence            56678899999999987   4554    89999999999999999999999999999999 7899999999999999999


Q ss_pred             HHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCC--------------CchhhhhHHhhHHHH
Q 016470           95 AIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKME--------------GPALVLQEELLWYER  160 (389)
Q Consensus        95 A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~--------------~~~~~l~~~l~~~~~  160 (389)
                      |+..|+.+++++|++++......++.+|.+|+||||+|+..++.++++.+.              ...+.........+.
T Consensus        86 A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (241)
T 1k1a_A           86 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  165 (241)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHH
Confidence            999999999999999987322238899999999999999988877664431              112222222222222


Q ss_pred             HHhhc-cchhhhhcccCCCChHHHHHhhh
Q 016470          161 VEEVS-MPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       161 v~~~~-~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      ++.+. .....+.+|.+|.||++++...+
T Consensus       166 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  194 (241)
T 1k1a_A          166 VQLLLQHGANVNAQMYSGSSALHSASGRG  194 (241)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHHT
T ss_pred             HHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            22221 23346778999999999987654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.88  E-value=4e-23  Score=192.96  Aligned_cols=174  Identities=16%  Similarity=0.096  Sum_probs=102.4

Q ss_pred             HHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCC
Q 016470            3 LARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQ   79 (389)
Q Consensus         3 iv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~   79 (389)
                      +.++|.++  ++|.+|   ..+.||||+|+..|+.+   .|+++|++++.+|  |+||||+|+..|+.+++++|+ ++|+
T Consensus        15 v~~lL~~~--~~~~~d---~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll-~~ga   86 (285)
T 3kea_A           15 LKSFLSSK--DTFKAD---VHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILL-FSGL   86 (285)
T ss_dssp             HHHHHHST--TTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHH-HTTC
T ss_pred             HHHHHHhC--CCCccC---CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHH-HCCC
Confidence            44555444  344554   44555677666666655   6666666666653  667777777777777777666 5566


Q ss_pred             cccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccc-ccccccccccCCCCccccCCCc-----------
Q 016470           80 AVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGG-NTLLHMTGIKRSDYVPEKMEGP-----------  147 (389)
Q Consensus        80 ~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G-~TpLhlA~~~~~~~~~~~l~~~-----------  147 (389)
                      +++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+| +||||+|+..++.++++.+...           
T Consensus        87 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~  162 (285)
T 3kea_A           87 DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR----LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILL  162 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG----GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHH
T ss_pred             CCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC----CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCc
Confidence            6666666677777777777777777777766666    66666666 5777777666665555333111           


Q ss_pred             -hhhhhHHhhHHHHHHhhc-cchhhhhcccCCCCh-HHHHHhhh
Q 016470          148 -ALVLQEELLWYERVEEVS-MPHFRNHRNNMGFTP-EELFATAN  188 (389)
Q Consensus       148 -~~~l~~~l~~~~~v~~~~-~~~~~~~~n~~g~tp-~~l~~~~~  188 (389)
                       ++.........+.++.+. .....+.+|.+|.|| ++++.+.+
T Consensus       163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~  206 (285)
T 3kea_A          163 SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK  206 (285)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHT
T ss_pred             cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcC
Confidence             111111111111111111 223367889999998 99887654

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=2e-23  Score=189.81  Aligned_cols=133  Identities=14%  Similarity=0.075  Sum_probs=106.8

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.|+++|++++..    ..+.++||.|+..|+.+   .|+++|+++|.+|.+|+||||+|+..|+.+++++|+ ++|
T Consensus        19 ~~~~~ll~~g~~~~~~----~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g   93 (239)
T 1ycs_B           19 KTGSERIAHGMRVKFN----PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFG   93 (239)
T ss_dssp             ----------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHT
T ss_pred             HHHHHHhccCCCcccC----chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            6789999999998854    35678899999999987   889999999999999999999999999999999999 679


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccc-cccccc--cccCCCCcccc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGN-TLLHMT--GIKRSDYVPEK  143 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~-TpLhlA--~~~~~~~~~~~  143 (389)
                      ++++.+|.+|+||||+|+.+|+.+++++|+++|++    ++.+|.+|. ||||+|  +..++.++++.
T Consensus        94 a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~~~~t~l~~a~~~~~g~~~~~~~  157 (239)
T 1ycs_B           94 VNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAA----VFAMTYSDMQTAADKCEEMEEGYTQCSQF  157 (239)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----cceecCCCCcchHHHHHHhhhccHHHHHH
Confidence            99999999999999999999999999999999999    999998887 999999  67777777733

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.88  E-value=1.1e-22  Score=186.64  Aligned_cols=176  Identities=15%  Similarity=0.106  Sum_probs=130.1

Q ss_pred             HHHHHHhCCCCCcccccc-ccCCchhhhhhh---cCCCch---hhhhcCCC-----------CCCCcCCCCCHHHHHHHc
Q 016470            3 LARFLIRRDTSWEITDSI-QDQSKPKIHRYG---ANPNAS---SVDQKGIG-----------ESSAIDNAETPLFLATKS   64 (389)
Q Consensus         3 iv~~Ll~~ga~vn~~~~~-~~~~~~~Lh~a~---~~~~~~---~Ll~~ga~-----------~n~~d~~G~tpLh~Aa~~   64 (389)
                      ++++|+++|++++..+.. +..+.||||+|+   ..|+.+   .|+++|++           .+.+|.+|+||||+|+..
T Consensus        24 ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  103 (260)
T 3jxi_A           24 LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER  103 (260)
T ss_dssp             HHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT
T ss_pred             HHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc
Confidence            456666799998876621 244678899888   667766   88888754           455566899999999999


Q ss_pred             CCHHHHHHHHHHCCCcccccC--------------CCCCcHHHHHHHcCChhhHHHHHh---cCCccccccccccccccc
Q 016470           65 GCIEIVKEIFNVYPQAVEHID--------------DEGRNILHVAIKYRQLEIFELVIQ---MEVPMRRLVRKIDNGGNT  127 (389)
Q Consensus        65 g~~~~v~~Ll~~~~~~~~~~d--------------~~G~t~Lh~A~~~g~~~iv~~Ll~---~~~~~~~l~~~~d~~G~T  127 (389)
                      |+.+++++|+ ++|++++.+|              ..|+||||+|+.+|+.+++++|++   +|++    ++.+|.+|+|
T Consensus       104 g~~~~v~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~----~~~~d~~g~T  178 (260)
T 3jxi_A          104 RCKHYVELLV-EKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD----LRRQDSRGNT  178 (260)
T ss_dssp             TCHHHHHHHH-HTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC----TTCCCTTSCC
T ss_pred             CCHHHHHHHH-hCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC----CcccCCCCCc
Confidence            9999999999 7899999998              689999999999999999999999   8998    9999999999


Q ss_pred             ccccccccCCCCccccCCCchhhhh-HHhhH--HHHHHhhccchhhhhcccCCCChHHHHHhhhh
Q 016470          128 LLHMTGIKRSDYVPEKMEGPALVLQ-EELLW--YERVEEVSMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       128 pLhlA~~~~~~~~~~~l~~~~~~l~-~~l~~--~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                      |||+|+..++....      ..... .-..+  .....-.......+.+|.+|.||++++.+.+.
T Consensus       179 pLh~A~~~~~~~~~------~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          179 VLHALVAIADNTRE------NTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             HHHHHHHHCCSSHH------HHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHhccCchh------HHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            99999986653211      00000 00000  00011000111226789999999999987653

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.88  E-value=4.7e-23  Score=181.35  Aligned_cols=133  Identities=20%  Similarity=0.216  Sum_probs=122.5

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhh-hcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVD-QKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll-~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++|++++..+   ..+.+|||.|+..|+.+   .|+ +.+++++.+|..|.||||+|+..|+.+++++|++..
T Consensus        53 ~~v~~Ll~~g~~~~~~~---~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  129 (201)
T 3hra_A           53 EIAKALIDRGADINLQN---SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG  129 (201)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            78999999999999887   56678899999999987   666 667899999999999999999999999999999666


Q ss_pred             CCcccccCCCCCcHHHHHHHcCC-----hhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQ-----LEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~-----~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      +++++.+|..|+||||+|+..++     .+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus       130 ~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~~  194 (201)
T 3hra_A          130 REDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD----QSIKDNSGRTAMDYANQKGYTEIS  194 (201)
T ss_dssp             CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             CCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC----CCccCCCCCCHHHHHHHcCCHhHH
Confidence            59999999999999999999998     8999999999999    999999999999999999887766

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.88  E-value=2.6e-23  Score=187.10  Aligned_cols=132  Identities=14%  Similarity=0.189  Sum_probs=122.9

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..+   ..+.+|||.|+..++.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ .+|
T Consensus        87 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g  162 (231)
T 3aji_A           87 EIVKALLVKGAHVNAVN---QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILL-FYK  162 (231)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH-hcC
Confidence            78999999999999887   56678899999999877   889999999999999999999999999999999999 789


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      ++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++.
T Consensus       163 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~i~  221 (231)
T 3aji_A          163 ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS----IYIENKEEKTPLQVAKGGLGLILK  221 (231)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHSCHHHHHHHH
T ss_pred             CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHhhHHHHHH
Confidence            99999999999999999999999999999999999    999999999999999887665544

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.88  E-value=3.7e-23  Score=177.70  Aligned_cols=143  Identities=21%  Similarity=0.233  Sum_probs=125.1

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHc
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      ..+.+++|+|+..|+.+   .|+++|+++|.+|.+|.||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+.+
T Consensus        12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           12 SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             -CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHc
Confidence            34556799999999987   899999999999999999999999999999999999 78999999999999999999999


Q ss_pred             CChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCC
Q 016470           99 RQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGF  178 (389)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~  178 (389)
                      |+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.      +             .....+.+|.+|.
T Consensus        91 ~~~~~~~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll------~-------------~g~~~~~~~~~g~  147 (169)
T 2y1l_E           91 GHLEIVEVLLKNGAD----VNANDMEGHTPLHLAAMFGHLEIVEVLL------K-------------NGADVNAQDKFGK  147 (169)
T ss_dssp             TCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH------H-------------TTCCTTCCCTTSC
T ss_pred             CCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHH------H-------------cCCCCCCcCCCCC
Confidence            999999999999999    9999999999999999998766652211      1             1222567899999


Q ss_pred             ChHHHHHhhh
Q 016470          179 TPEELFATAN  188 (389)
Q Consensus       179 tp~~l~~~~~  188 (389)
                      ||++++.+.+
T Consensus       148 t~l~~A~~~~  157 (169)
T 2y1l_E          148 TAFDISIDNG  157 (169)
T ss_dssp             CHHHHHHHTT
T ss_pred             CHHHHHHHhC
Confidence            9999998765

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.88  E-value=1.1e-22  Score=193.84  Aligned_cols=181  Identities=15%  Similarity=0.143  Sum_probs=134.5

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCC------------------------------
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGE------------------------------   47 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~------------------------------   47 (389)
                      +|+|++||++|+++|.++  .+.|.||||+|+..|+.+   +|+++|+++                              
T Consensus        38 ~~~V~~LL~~Gadvn~~~--~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (337)
T 4g8k_A           38 VDLVQQLLEGGANVNFQE--EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKG  115 (337)
T ss_dssp             HHHHHHHHHHTCCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHHHHHCCCCCCccC--CCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhcc
Confidence            479999999999999876  244778899999999877   788887765                              


Q ss_pred             ---CCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCccccc----------CCCCCcHHHHHHHcCChhhHHHHHh-cCCc
Q 016470           48 ---SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHI----------DDEGRNILHVAIKYRQLEIFELVIQ-MEVP  113 (389)
Q Consensus        48 ---n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~----------d~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~  113 (389)
                         +.+|.+|.||+|+|+..|+.++++.++ .+|++++.+          +..|+||||+|+++|+.+++++|++ .|++
T Consensus       116 ~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll-~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad  194 (337)
T 4g8k_A          116 ADVNECDFYGFTAFMEAAVYGKVKALKFLY-KRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD  194 (337)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCC
T ss_pred             chhhhhccCCCCHHHHHHHcCcHHHHHHHH-HcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCC
Confidence               456778999999999999999999999 777776543          4568999999999999999999996 5888


Q ss_pred             ccccccccccccccccccccccCCCC----ccccC-------------CCchhhhhHHhhHHHHHHhhc--cchhhhhcc
Q 016470          114 MRRLVRKIDNGGNTLLHMTGIKRSDY----VPEKM-------------EGPALVLQEELLWYERVEEVS--MPHFRNHRN  174 (389)
Q Consensus       114 ~~~l~~~~d~~G~TpLhlA~~~~~~~----~~~~l-------------~~~~~~l~~~l~~~~~v~~~~--~~~~~~~~n  174 (389)
                          +|.+|..|+||+|.++..+...    +.+.+             ....+.........+.++.+.  .....+.+|
T Consensus       195 ----~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d  270 (337)
T 4g8k_A          195 ----VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD  270 (337)
T ss_dssp             ----TTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC
T ss_pred             ----cCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC
Confidence                8999999999998877544432    22221             111222222222333344332  234567889


Q ss_pred             cCCCChHHHHHhhh
Q 016470          175 NMGFTPEELFATAN  188 (389)
Q Consensus       175 ~~g~tp~~l~~~~~  188 (389)
                      .+|+||++++.+.+
T Consensus       271 ~~G~TpL~~A~~~g  284 (337)
T 4g8k_A          271 SDGKTALLLAVELK  284 (337)
T ss_dssp             TTSCBHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcC
Confidence            99999999987764

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.88  E-value=8.2e-24  Score=196.81  Aligned_cols=161  Identities=16%  Similarity=0.161  Sum_probs=135.5

Q ss_pred             HHHHHHHhCCCC--CccccccccCCchhhhhhhcCCCch---hhhhcCC-CCCCCcCCCCCHHHHHH-----HcCCHHHH
Q 016470            2 ELARFLIRRDTS--WEITDSIQDQSKPKIHRYGANPNAS---SVDQKGI-GESSAIDNAETPLFLAT-----KSGCIEIV   70 (389)
Q Consensus         2 eiv~~Ll~~ga~--vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga-~~n~~d~~G~tpLh~Aa-----~~g~~~~v   70 (389)
                      +.++.+++.+.+  +|..|   ..|.||||+|+..|+.+   .|+++|+ +++.+|..|.||||+|+     ..|+.+++
T Consensus        90 ~~~~~l~~~~~~~~~n~~d---~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v  166 (276)
T 4hbd_A           90 VTFRAMSARLLDYVVNIAD---SNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETV  166 (276)
T ss_dssp             HHHHHHCHHHHHHHHTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCcCCC---CCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHH
Confidence            345666666555  56666   56778899999999987   8999998 99999999999999999     67899999


Q ss_pred             HHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhh
Q 016470           71 KEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALV  150 (389)
Q Consensus        71 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~  150 (389)
                      +.|+ ..|++.+..|..|+||||+|+.+|+.+++++|+++|++    +|.+|.+|+||||+|+..++.++++.+..    
T Consensus       167 ~~Ll-~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad----~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~----  237 (276)
T 4hbd_A          167 LQLF-RLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEAD----VNVQDDDGSTALMCACEHGHKEIAGLLLA----  237 (276)
T ss_dssp             HHHH-HHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHT----
T ss_pred             HHHH-HcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC----CCCCCCCCCCHHHHHHHCCCHHHHHHHHh----
Confidence            9999 67788888999999999999999999999999999999    99999999999999999988766622211    


Q ss_pred             hhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          151 LQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       151 l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                                    ......+.+|.+|.||++++.+.+
T Consensus       238 --------------~~gad~~~~d~~g~TpL~~A~~~g  261 (276)
T 4hbd_A          238 --------------VPSCDISLTDRDGSTALMVALDAG  261 (276)
T ss_dssp             --------------STTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             --------------cCCCCCcCcCCCCCCHHHHHHHcC
Confidence                          022335788999999999998765

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.88  E-value=1.8e-23  Score=191.58  Aligned_cols=137  Identities=17%  Similarity=0.154  Sum_probs=121.1

Q ss_pred             CHHHHHHHhCCCCCcccc--------ccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCC-------------CCC
Q 016470            1 MELARFLIRRDTSWEITD--------SIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDN-------------AET   56 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~--------~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~-------------G~t   56 (389)
                      .|++++|+++|++++..+        .....+.||||+|+..|+.+   .|+++|++++.+|..             |.|
T Consensus        59 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~t  138 (256)
T 2etb_A           59 NACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGEL  138 (256)
T ss_dssp             CTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSS
T ss_pred             HHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCC
Confidence            478999999998876332        01135678899999999987   899999999999886             999


Q ss_pred             HHHHHHHcCCHHHHHHHHHH--CCCcccccCCCCCcHHHHHHH--cCChh-------hHHHHHhcCCcccccc-------
Q 016470           57 PLFLATKSGCIEIVKEIFNV--YPQAVEHIDDEGRNILHVAIK--YRQLE-------IFELVIQMEVPMRRLV-------  118 (389)
Q Consensus        57 pLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~G~t~Lh~A~~--~g~~~-------iv~~Ll~~~~~~~~l~-------  118 (389)
                      |||+|+..|+.+++++|++.  +|++++.+|.+|+||||+|+.  +++.+       ++++|+++|++    +       
T Consensus       139 pL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~----~~~~~~~~  214 (256)
T 2etb_A          139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR----LCPTVQLE  214 (256)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH----HSTTCCGG
T ss_pred             HHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCC----cccccccc
Confidence            99999999999999999943  899999999999999999999  78888       99999999998    7       


Q ss_pred             cccccccccccccccccCCCCcc
Q 016470          119 RKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       119 ~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      +.+|.+|+||||+|+..++.+++
T Consensus       215 ~~~d~~g~tpL~~A~~~g~~~~v  237 (256)
T 2etb_A          215 EISNHQGLTPLKLAAKEGKIEIF  237 (256)
T ss_dssp             GCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccCCCCCCHHHHHHHhCCHHHH
Confidence            89999999999999999988777

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.87  E-value=1e-22  Score=187.95  Aligned_cols=181  Identities=17%  Similarity=0.139  Sum_probs=144.2

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +|++++|+++|++++..+  ...+.+|||.|+..|+.+   .|+++|++++.+|.+|.||||+|+..|+.+++++|+ ++
T Consensus        18 ~~~v~~Ll~~g~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~   94 (285)
T 1wdy_A           18 VDLVQQLLEGGANVNFQE--EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL-SK   94 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHHcCCCccccc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-Hc
Confidence            378999999999988773  256678899999999877   899999999999999999999999999999999999 78


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccc----------ccccccccccccccCCCCccccCCC-
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKI----------DNGGNTLLHMTGIKRSDYVPEKMEG-  146 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~----------d~~G~TpLhlA~~~~~~~~~~~l~~-  146 (389)
                      |++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+          |.+|.||||+|+..++.++++.+.. 
T Consensus        95 g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  170 (285)
T 1wdy_A           95 GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN----VNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDE  170 (285)
T ss_dssp             TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC----TTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC----cccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999999999999999999988    6666          8899999999999888777654421 


Q ss_pred             -------------chhhhhHHhhH----HHHHHhh-ccchhhhhcccCCCChHHHHHhhh
Q 016470          147 -------------PALVLQEELLW----YERVEEV-SMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       147 -------------~~~~l~~~l~~----~~~v~~~-~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                                   ..+........    .+.++.+ ......+.+|.+|.||++++.+.+
T Consensus       171 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~  230 (285)
T 1wdy_A          171 MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKK  230 (285)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTT
T ss_pred             cCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence                         11111100000    1111111 123345678899999999988764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.87  E-value=7.1e-22  Score=177.87  Aligned_cols=179  Identities=19%  Similarity=0.152  Sum_probs=141.5

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcC-CCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAID-NAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~-~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++|++++..+   ..+.+|||.|+..|+.+   .|+++|++++..+. .|.||||+|+..|+.++++.|+ ++
T Consensus        23 ~~~~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll-~~   98 (240)
T 3eu9_A           23 ERCRELVEAGYDVRQPD---KENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM-KY   98 (240)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHcCCCcCCCC---CCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHH-Hc
Confidence            78999999999998887   56778899999999877   89999999986654 4999999999999999999999 78


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCC-CCccccCC-----------
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS-DYVPEKME-----------  145 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~-~~~~~~l~-----------  145 (389)
                      |++++.+|..|+||||.|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++ ..+.+.+.           
T Consensus        99 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~----~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~  174 (240)
T 3eu9_A           99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQD----VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK  174 (240)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCT
T ss_pred             CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCC----ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhc
Confidence            999999999999999999999999999999999998    99999999999999996665 44443221           


Q ss_pred             ---CchhhhhHHhhHHHHHHhhc-cchhhhhcccCCCChHHHHHhhh
Q 016470          146 ---GPALVLQEELLWYERVEEVS-MPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       146 ---~~~~~l~~~l~~~~~v~~~~-~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                         ...+.........+.++.+. .....+.+|.+|+||++++.+.+
T Consensus       175 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  221 (240)
T 3eu9_A          175 YHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRK  221 (240)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence               12222222222222222211 22345678889999999987765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.87  E-value=3.7e-23  Score=200.57  Aligned_cols=178  Identities=13%  Similarity=0.087  Sum_probs=131.9

Q ss_pred             HHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC-
Q 016470            3 LARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP-   78 (389)
Q Consensus         3 iv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~-   78 (389)
                      .++.|+++|+++|..|   ..+.||||+|+..|+.+   +|+++|++++.+|..|.||||+|+..|+.+++++|+ ..+ 
T Consensus       148 ~~~~ll~~ga~vn~~d---~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~~~  223 (373)
T 2fo1_E          148 EAKECIAAGADVNAMD---CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYML-NSTK  223 (373)
T ss_dssp             HHHHHHHTCCCTTCCC---TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHT-TSHH
T ss_pred             HHHHHHhcCCCCcCCC---CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHH-hcCc
Confidence            4567888888888877   55667789888888876   788888988888888899999999999988888888 555 


Q ss_pred             --CcccccCCCCCcHHHHHHHcC---ChhhHHHHHhcCCcccccccc--------cccccccccccccccCCCCccccCC
Q 016470           79 --QAVEHIDDEGRNILHVAIKYR---QLEIFELVIQMEVPMRRLVRK--------IDNGGNTLLHMTGIKRSDYVPEKME  145 (389)
Q Consensus        79 --~~~~~~d~~G~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~l~~~--------~d~~G~TpLhlA~~~~~~~~~~~l~  145 (389)
                        .+++..|.+|+||||+|+..+   +.+++++|+++|++    ++.        +|.+|+||||+|+..++.++++.+.
T Consensus       224 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~----~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll  299 (373)
T 2fo1_E          224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAK----VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLV  299 (373)
T ss_dssp             HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCC----SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHH
T ss_pred             cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCC----cccccccccCcccccCCCHHHHHHHhCCHHHHHHHH
Confidence              678888888888888888887   78888888888877    443        6778888888888888777664442


Q ss_pred             C--------------chhhhhHHhhHHHHHHhhc-cchhhhhcccCCCChHHHHHhhh
Q 016470          146 G--------------PALVLQEELLWYERVEEVS-MPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       146 ~--------------~~~~l~~~l~~~~~v~~~~-~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      .              .++.........+.++.+. .....+.+|.+|+||++++.+.+
T Consensus       300 ~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g  357 (373)
T 2fo1_E          300 GEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANN  357 (373)
T ss_dssp             HHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTT
T ss_pred             HhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcC
Confidence            1              2222222222222222221 23446788999999999998765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.87  E-value=2.8e-23  Score=188.00  Aligned_cols=137  Identities=13%  Similarity=0.077  Sum_probs=122.0

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..|   ..+.||||+|+..|+.+   .|+++|+++|.+|.+|+||||+|+..|+.+++++|+ ++|
T Consensus        35 ~~v~~Ll~~g~~~~~~d---~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~g  110 (229)
T 2vge_A           35 EVVQQAVKEMNDPSQPN---EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV-QHG  110 (229)
T ss_dssp             HHHHHHHHHSSCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-TTT
T ss_pred             HHHHHHHhcCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            78999999999999887   56778899999999877   899999999999999999999999999999999999 889


Q ss_pred             CcccccC-CCCCcHHHHH--HHcCChhhHHHHHhcCCccc----------------------------cccccccccccc
Q 016470           79 QAVEHID-DEGRNILHVA--IKYRQLEIFELVIQMEVPMR----------------------------RLVRKIDNGGNT  127 (389)
Q Consensus        79 ~~~~~~d-~~G~t~Lh~A--~~~g~~~iv~~Ll~~~~~~~----------------------------~l~~~~d~~G~T  127 (389)
                      ++++.+| .+|+||||+|  +..|+.+++++|+++|++..                            ..++.+|.+|+|
T Consensus       111 a~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~T  190 (229)
T 2vge_A          111 AAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEET  190 (229)
T ss_dssp             CCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEEEEESSCTTCS
T ss_pred             CCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCccccccccccccCCCccc
Confidence            9999987 6999999999  99999999999999876520                            115677888999


Q ss_pred             ccccccccCCCCccc
Q 016470          128 LLHMTGIKRSDYVPE  142 (389)
Q Consensus       128 pLhlA~~~~~~~~~~  142 (389)
                      |||+|+..|+.++++
T Consensus       191 pL~~A~~~g~~~~v~  205 (229)
T 2vge_A          191 DWWWAALHGQEGYVP  205 (229)
T ss_dssp             SEEEEEETTEEEEEE
T ss_pred             HHHHHHHcCCcceee
Confidence            999999998888773

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.87  E-value=4.4e-23  Score=176.17  Aligned_cols=144  Identities=19%  Similarity=0.184  Sum_probs=123.3

Q ss_pred             cCCchhhhhhhcCCCch---hhhh-cCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHH
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQ-KGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIK   97 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~-~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~   97 (389)
                      ..+.++||.|+..|+.+   .|++ .+.+++..|..|.||||+|+..|+.+++++|+ ++|++++.+|.+|+||||+|+.
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL-QHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHH-hcCCCCCccCCCCCCHHHHHHH
Confidence            44567899999999988   5555 56788889999999999999999999999999 7899999999999999999999


Q ss_pred             cCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCC
Q 016470           98 YRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMG  177 (389)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g  177 (389)
                      +|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.      +             .....+.+|.+|
T Consensus        85 ~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll------~-------------~ga~~~~~~~~g  141 (165)
T 3twr_A           85 YGHYEVAELLVKHGAV----VNVADLWKFTPLHEAAAKGKYEICKLLL------Q-------------HGADPTKKNRDG  141 (165)
T ss_dssp             TTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHH------H-------------TTCCTTCCCTTS
T ss_pred             cCcHHHHHHHHhCCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHH------H-------------cCCCCcccCCCC
Confidence            9999999999999999    9999999999999999998776652211      1             122357889999


Q ss_pred             CChHHHHHhhhh
Q 016470          178 FTPEELFATANN  189 (389)
Q Consensus       178 ~tp~~l~~~~~~  189 (389)
                      +||++++.+.+.
T Consensus       142 ~t~l~~a~~~~~  153 (165)
T 3twr_A          142 NTPLDLVKDGDT  153 (165)
T ss_dssp             CCTGGGSCTTCH
T ss_pred             CChhHhHhcCCh
Confidence            999999876544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.87  E-value=6.9e-23  Score=176.14  Aligned_cols=140  Identities=20%  Similarity=0.188  Sum_probs=121.8

Q ss_pred             chhhhhhhcCCCch---hhhhcCCC-CCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCC
Q 016470           25 KPKIHRYGANPNAS---SVDQKGIG-ESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        25 ~~~Lh~a~~~~~~~---~Ll~~ga~-~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  100 (389)
                      .+|||.|+..|+.+   .|+++|.+ ++.+|..|.||||+|+..|+.+++++|+ ++|++++.+|..|+||||+|+.+|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLL-EWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCchhhcccCCCHHHHHHHCCC
Confidence            45699999999987   77888876 8999999999999999999999999999 7789999999999999999999999


Q ss_pred             hhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCCh
Q 016470          101 LEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTP  180 (389)
Q Consensus       101 ~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp  180 (389)
                      .+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.      +             .....+.+|.+|.||
T Consensus        82 ~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll------~-------------~ga~~~~~~~~g~t~  138 (172)
T 3v30_A           82 TDIVGLLLERDVD----INIYDWNGGTPLLYAVRGNHVKCVEALL------A-------------RGADLTTEADSGYTP  138 (172)
T ss_dssp             HHHHHHHHTTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH------H-------------TTCCTTCCCTTSCCH
T ss_pred             HHHHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHH------H-------------cCCCccccCCCCCCH
Confidence            9999999999999    9999999999999999998776652211      1             122356789999999


Q ss_pred             HHHHHhhh
Q 016470          181 EELFATAN  188 (389)
Q Consensus       181 ~~l~~~~~  188 (389)
                      ++++...+
T Consensus       139 l~~A~~~~  146 (172)
T 3v30_A          139 MDLAVALG  146 (172)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHhC
Confidence            99998765

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.87  E-value=1.1e-22  Score=172.96  Aligned_cols=142  Identities=20%  Similarity=0.194  Sum_probs=122.9

Q ss_pred             CCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcC
Q 016470           23 QSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g   99 (389)
                      ...++||.|+..|+.+   .|+++|++++.+|..|+||||+|+. |+.+++++|+ +.|++++.+|..|+||||+|+.+|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcC
Confidence            3457799999999987   7899999999999999999999999 9999999999 789999999999999999999999


Q ss_pred             ChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCC
Q 016470          100 QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFT  179 (389)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~t  179 (389)
                      +.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.                 +. .....+.+|.+|.|
T Consensus        82 ~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-----------------~~-g~~~~~~~~~~g~t  139 (162)
T 1ihb_A           82 FLDTLQTLLEFQAD----VNIEDNEGNLPLHLAAKEGHLRVVEFLV-----------------KH-TASNVGHRNHKGDT  139 (162)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH-----------------HH-SCCCTTCCCTTSCC
T ss_pred             CHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHH-----------------Hc-cCCCCCCcCCCCCc
Confidence            99999999999999    9999999999999999988776652211                 10 11113678899999


Q ss_pred             hHHHHHhhh
Q 016470          180 PEELFATAN  188 (389)
Q Consensus       180 p~~l~~~~~  188 (389)
                      |++++.+.+
T Consensus       140 ~l~~A~~~~  148 (162)
T 1ihb_A          140 ACDLARLYG  148 (162)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHcC
Confidence            999998765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.87  E-value=8.2e-23  Score=190.02  Aligned_cols=132  Identities=18%  Similarity=0.212  Sum_probs=120.9

Q ss_pred             HHHHHHHhCCC-CCccccccccCCchhhhhhhcC-----CCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHH
Q 016470            2 ELARFLIRRDT-SWEITDSIQDQSKPKIHRYGAN-----PNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 eiv~~Ll~~ga-~vn~~~~~~~~~~~~Lh~a~~~-----~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +++++|+++|+ ++|..+   ..+.+|||.|+..     ++.+   .|++.|.+.+..|..|.||||+|+..|+.+++++
T Consensus       125 ~~v~~Ll~~g~~~~~~~~---~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~  201 (276)
T 4hbd_A          125 PVVQQLLDSGVCKVDKQN---RAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKA  201 (276)
T ss_dssp             HHHHHHHHTSCCCTTCCC---TTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHCCCCcCCCCC---CCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            78999999998 888887   6677889998843     4433   8899999999999999999999999999999999


Q ss_pred             HHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHh-cCCcccccccccccccccccccccccCCCCcc
Q 016470           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |+ ++|++++.+|.+|+||||+|+.+|+.+++++|++ .|++    ++.+|.+|+||||+|+..++.+++
T Consensus       202 Ll-~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad----~~~~d~~g~TpL~~A~~~g~~~iv  266 (276)
T 4hbd_A          202 LL-ACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD----ISLTDRDGSTALMVALDAGQSEIA  266 (276)
T ss_dssp             HH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC----TTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HH-hCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC----CcCcCCCCCCHHHHHHHcCCHHHH
Confidence            99 8899999999999999999999999999999999 8998    999999999999999999987776

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.87  E-value=1.8e-22  Score=199.17  Aligned_cols=179  Identities=18%  Similarity=0.206  Sum_probs=148.1

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..+   ..+.+|||.|+..++.+   .|+++|++++.++.+|.||||+|+..|+.++++.|+ .+|
T Consensus       160 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g  235 (437)
T 1n11_A          160 RVAELLLERDAHPNAAG---KNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL-QYG  235 (437)
T ss_dssp             HHHHHHHHTTCCTTCCC---SSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHhCCCCCCCCC---CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            78999999999999887   56678899999999877   899999999999999999999999999999999999 889


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCC------------
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG------------  146 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~------------  146 (389)
                      ++++.+|..|+||||+|+..|+.+++++|++++++    ++.+|.+|+||||+|+..++.++++.+..            
T Consensus       236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  311 (437)
T 1n11_A          236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN----GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMG  311 (437)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSC
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCC
Confidence            99999999999999999999999999999999998    99999999999999999988777654421            


Q ss_pred             -chhhhhHHhhHHHHHHhhc-cchhhhhcccCCCChHHHHHhhh
Q 016470          147 -PALVLQEELLWYERVEEVS-MPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       147 -~~~~l~~~l~~~~~v~~~~-~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                       +++.........+.++-+. .....+.+|+.|.||++++.+.+
T Consensus       312 ~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g  355 (437)
T 1n11_A          312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQG  355 (437)
T ss_dssp             CCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCC
Confidence             2232222222122222211 23346788999999999988764

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.87  E-value=1.9e-22  Score=192.06  Aligned_cols=113  Identities=16%  Similarity=0.150  Sum_probs=101.1

Q ss_pred             HHHHHHHh-CCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIR-RDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~-~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +.++.|++ .|.+++..|   ..+.||||.|+..|+.+   .|+++|++++.+|.+|.||||+|+..|+.+++++|+ ++
T Consensus        38 ~~v~~ll~~~~~~~~~~d---~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll-~~  113 (351)
T 3utm_A           38 EKLMALLTPLNVNCHASD---GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL-KH  113 (351)
T ss_dssp             HHHHHHCCTTTTTCCCSS---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHhcCCCcccCC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHH-HC
Confidence            45666665 488888877   56778899999999987   899999999999999999999999999999999999 78


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKID  122 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d  122 (389)
                      |++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|
T Consensus       114 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~~  154 (351)
T 3utm_A          114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD----PTLVN  154 (351)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCC
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----Ccccc
Confidence            999999999999999999999999999999999988    55444

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.87  E-value=9.5e-23  Score=172.07  Aligned_cols=139  Identities=16%  Similarity=0.092  Sum_probs=121.5

Q ss_pred             hhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChh
Q 016470           26 PKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~  102 (389)
                      ++||.|+..|+.+   .|+++|++++ .|..|.||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+.+|+.+
T Consensus         4 ~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~   81 (153)
T 1awc_B            4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcChHH
Confidence            5699999999987   8899999886 5889999999999999999999999 889999999999999999999999999


Q ss_pred             hHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHH
Q 016470          103 IFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEE  182 (389)
Q Consensus       103 iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~  182 (389)
                      ++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.      +             .....+.+|.+|.||++
T Consensus        82 ~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll------~-------------~ga~~~~~~~~g~t~l~  138 (153)
T 1awc_B           82 IVEVLLKHGAD----VNAKDMLKMTALHWATEHNHQEVVELLI------K-------------YGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             HHHHHHTTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH------H-------------TTCCTTCCCTTSCCHHH
T ss_pred             HHHHHHHcCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHHH------H-------------cCCCccccCCCCCCHHH
Confidence            99999999999    9999999999999999988776652211      1             12235678999999999


Q ss_pred             HHHhhhh
Q 016470          183 LFATANN  189 (389)
Q Consensus       183 l~~~~~~  189 (389)
                      ++...+.
T Consensus       139 ~A~~~~~  145 (153)
T 1awc_B          139 ISIDNGN  145 (153)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9987653

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.87  E-value=1.8e-22  Score=186.65  Aligned_cols=176  Identities=16%  Similarity=0.113  Sum_probs=126.8

Q ss_pred             HHHHHHHh----CCCCCcccc-ccccCCchhhhhhhcC---CCch---hhhhcCCCC-------C----CCcCCCCCHHH
Q 016470            2 ELARFLIR----RDTSWEITD-SIQDQSKPKIHRYGAN---PNAS---SVDQKGIGE-------S----SAIDNAETPLF   59 (389)
Q Consensus         2 eiv~~Ll~----~ga~vn~~~-~~~~~~~~~Lh~a~~~---~~~~---~Ll~~ga~~-------n----~~d~~G~tpLh   59 (389)
                      ++++.|++    .+++++..+ .....+.||||+|+..   |+.+   .|+++|+++       |    .+|..|.||||
T Consensus        27 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~  106 (273)
T 2pnn_A           27 QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALH  106 (273)
T ss_dssp             STTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHH
T ss_pred             HHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHH
Confidence            45566665    666655221 1125677889999965   7765   888988653       2    26778999999


Q ss_pred             HHHHcCCHHHHHHHHHHCCCcccccCC--------------CCCcHHHHHHHcCChhhHHHHHh---cCCcccccccccc
Q 016470           60 LATKSGCIEIVKEIFNVYPQAVEHIDD--------------EGRNILHVAIKYRQLEIFELVIQ---MEVPMRRLVRKID  122 (389)
Q Consensus        60 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~G~t~Lh~A~~~g~~~iv~~Ll~---~~~~~~~l~~~~d  122 (389)
                      +|+..|+.+++++|+ ++|++++.+|.              .|+||||+|+.+|+.+++++|++   +|++    ++.+|
T Consensus       107 ~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad----~~~~d  181 (273)
T 2pnn_A          107 IAIERRNMTLVTLLV-ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD----ISARD  181 (273)
T ss_dssp             HHHHTTCHHHHHHHH-HTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC----TTCCC
T ss_pred             HHHHcCCHHHHHHHH-HCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC----ceeeC
Confidence            999999999999999 77999999987              79999999999999999999999   8998    99999


Q ss_pred             cccccccccccccCCCCccccCCCchhhh-hHHhhHH--HHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          123 NGGNTLLHMTGIKRSDYVPEKMEGPALVL-QEELLWY--ERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       123 ~~G~TpLhlA~~~~~~~~~~~l~~~~~~l-~~~l~~~--~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      .+|+||||+|+..++....      .... ..-..+.  ....--......+.+|.+|.||++++.+.+
T Consensus       182 ~~g~tpLh~A~~~~~~~~~------~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g  244 (273)
T 2pnn_A          182 SVGNTVLHALVEVADNTVD------NTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSG  244 (273)
T ss_dssp             TTSCCHHHHHHHHCCSCHH------HHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred             CCCCcHHHHHHHccCcchh------HHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhC
Confidence            9999999999987763221      0000 0000000  000000000112468999999999998765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.87  E-value=8.5e-23  Score=176.97  Aligned_cols=141  Identities=17%  Similarity=0.173  Sum_probs=121.2

Q ss_pred             CchhhhhhhcCCCch---hhhhc-CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcC
Q 016470           24 SKPKIHRYGANPNAS---SVDQK-GIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        24 ~~~~Lh~a~~~~~~~---~Ll~~-ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g   99 (389)
                      +.++||.|+..|+.+   .|+++ +.+++.+|..|.||||+|+..|+.+++++|+ +.|++++.+|.+|+||||+|+.+|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcC
Confidence            445699999999988   56666 7889999999999999999999999999999 789999999999999999999999


Q ss_pred             ChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCC
Q 016470          100 QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFT  179 (389)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~t  179 (389)
                      +.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.      +             .....+.+|.+|+|
T Consensus        84 ~~~~v~~Ll~~g~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll------~-------------~ga~~~~~~~~g~t  140 (179)
T 3f6q_A           84 HRDIVQKLLQYKAD----INAVNEHGNVPLHYACFWGQDQVAEDLV------A-------------NGALVSICNKYGEM  140 (179)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHH------H-------------TTCCSSBCCTTSCC
T ss_pred             CHHHHHHHHHcCCC----CCccCCCCCCHHHHHHHcCCHHHHHHHH------H-------------CCCCcchhccCCCC
Confidence            99999999999999    9999999999999999998766652211      1             12235788999999


Q ss_pred             hHHHHHhhh
Q 016470          180 PEELFATAN  188 (389)
Q Consensus       180 p~~l~~~~~  188 (389)
                      |++++.+..
T Consensus       141 pl~~A~~~~  149 (179)
T 3f6q_A          141 PVDKAKAPL  149 (179)
T ss_dssp             GGGGSCHHH
T ss_pred             cHHHHHHHH
Confidence            999987654

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.87  E-value=1.2e-22  Score=183.01  Aligned_cols=139  Identities=20%  Similarity=0.213  Sum_probs=119.8

Q ss_pred             HHHHHHHhCCCCCccc--cccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcC-------------CCCCHHHHHHH
Q 016470            2 ELARFLIRRDTSWEIT--DSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAID-------------NAETPLFLATK   63 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~--~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~-------------~G~tpLh~Aa~   63 (389)
                      |++++|+++|+++...  +.....+.+|||.|+..|+.+   .|+++|++++.++.             +|.||||+|+.
T Consensus        51 ~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  130 (232)
T 2rfa_A           51 EAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC  130 (232)
T ss_dssp             HHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHH
T ss_pred             HHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHH
Confidence            7899999999886321  111246778899999999877   89999999988765             79999999999


Q ss_pred             cCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhH----HHHHhcCCccc--ccccccccccccccccccccCC
Q 016470           64 SGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIF----ELVIQMEVPMR--RLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        64 ~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv----~~Ll~~~~~~~--~l~~~~d~~G~TpLhlA~~~~~  137 (389)
                      .|+.+++++|+ ++|++++.+|.+|+||||+|+.+|+.+++    ++|+++|++..  .+.+.+|.+|+||||+|+..++
T Consensus       131 ~~~~~~v~~Ll-~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          131 VGSEEIVRLLI-EHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             HTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             cCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence            99999999999 78999999999999999999999999988    99999998711  1226899999999999999998


Q ss_pred             CCcc
Q 016470          138 DYVP  141 (389)
Q Consensus       138 ~~~~  141 (389)
                      .+++
T Consensus       210 ~~~v  213 (232)
T 2rfa_A          210 IVMF  213 (232)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8777

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.87  E-value=7.8e-23  Score=187.55  Aligned_cols=136  Identities=15%  Similarity=0.152  Sum_probs=119.0

Q ss_pred             CHHHHHHHhCCCCCc---------cccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCc--------------CCC
Q 016470            1 MELARFLIRRDTSWE---------ITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAI--------------DNA   54 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn---------~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d--------------~~G   54 (389)
                      .|++++|+++|++++         ..+.+ ..+.||||+|+..|+.+   .|+++|++++.+|              ..|
T Consensus        62 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g  140 (260)
T 3jxi_A           62 NDTIPILLDIAEKTGNMREFINSPFRDVY-YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFG  140 (260)
T ss_dssp             CTHHHHHHHHHHHTTCHHHHHTCCBCCSS-EESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSC
T ss_pred             HHHHHHHHHhcccccchHhhhcccccccc-cCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCC
Confidence            478999999986532         22211 35678899999999987   8999999999998              689


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHH--CCCcccccCCCCCcHHHHHHHcCC---------hhhHHHHHhcCCcccccc-----
Q 016470           55 ETPLFLATKSGCIEIVKEIFNV--YPQAVEHIDDEGRNILHVAIKYRQ---------LEIFELVIQMEVPMRRLV-----  118 (389)
Q Consensus        55 ~tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~G~t~Lh~A~~~g~---------~~iv~~Ll~~~~~~~~l~-----  118 (389)
                      .||||+|+..|+.+++++|++.  +|++++.+|.+|+||||+|+..++         .+++++|+++|++    +     
T Consensus       141 ~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~----~~~~~~  216 (260)
T 3jxi_A          141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK----LFPDTN  216 (260)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHH----HCTTCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcc----cccccc
Confidence            9999999999999999999932  899999999999999999999888         6999999999988    6     


Q ss_pred             --cccccccccccccccccCCCCcc
Q 016470          119 --RKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       119 --~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                        +.+|.+|+||||+|++.++.+++
T Consensus       217 ~~~~~d~~g~tpL~~A~~~g~~~~v  241 (260)
T 3jxi_A          217 LEALLNNDGLSPLMMAAKTGKIGIF  241 (260)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             hhhcccCCCCCHHHHHHHcCCHHHH
Confidence              78999999999999999988777

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.87  E-value=1.2e-22  Score=168.23  Aligned_cols=115  Identities=23%  Similarity=0.264  Sum_probs=108.2

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHc
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      ..+.++||+|+..|+.+   .|+++|+++|.+|..|.||||+|+..|+.+++++|+ ++|++++.+|.+|+||||+|+.+
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHc
Confidence            44567899999999987   889999999999999999999999999999999999 78999999999999999999999


Q ss_pred             CChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           99 RQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        91 ~~~~~v~~Ll~~g~~----~~~~~~~g~tpl~~A~~~~~~~~~  129 (136)
T 2jab_A           91 GHLEIAEVLLKHGAD----VNAQDKFGKTAFDISIGNGNEDLA  129 (136)
T ss_dssp             TCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             CCHHHHHHHHHcCCC----CcCcCCCCCCHHHHHHHCCCHHHH
Confidence            999999999999999    999999999999999999887665

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.86  E-value=1.9e-22  Score=163.87  Aligned_cols=109  Identities=15%  Similarity=0.150  Sum_probs=101.9

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHc
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      ..+.++||.|+..|+.+   .|+++|++++.+|..|+||||+|+..|+.+++++|+ ++|++++.+|.+|+||||+|+..
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHH-TTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHc
Confidence            45668899999999987   789999999999999999999999999999999999 88999999999999999999999


Q ss_pred             CChhhHHHHHhcCCccccccccccccccccccccccc
Q 016470           99 RQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIK  135 (389)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~  135 (389)
                      |+.+++++|+++|++    ++.+|.+|+||||+|...
T Consensus        84 ~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           84 GHVSCVKLLLSKGAD----KTVKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             TCHHHHHHHHHTTCC----TTCCCTTSCCHHHHCCCH
T ss_pred             CCHHHHHHHHHcCCC----CCCcCCCCCCHHHHhCCH
Confidence            999999999999999    999999999999999654

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=4.1e-23  Score=175.13  Aligned_cols=136  Identities=10%  Similarity=0.083  Sum_probs=104.0

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCc-HHHHHHH
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN-ILHVAIK   97 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t-~Lh~A~~   97 (389)
                      ..+.++||.|+..|+.+   .|+++|++++.+|..|+||||+|+ .|+.+++++|+ ++|++++.+|..|+| |||+|+.
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll-~~g~~~~~~d~~g~ttpL~~A~~   87 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAAR   87 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHH-TTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHH
Confidence            45567799999999877   788999999999999999999985 89999999999 778999999999998 9999999


Q ss_pred             cCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCC
Q 016470           98 YRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMG  177 (389)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g  177 (389)
                      +|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+...                   ....+.+|..|
T Consensus        88 ~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-------------------ga~~~~~~~~g  144 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGAR----LDVRDAWGRLPVDLAEELGHRDVARYLRAA-------------------AGGTRGSNHAR  144 (156)
T ss_dssp             HTCHHHHHHHHHHTCC----SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-------------------C----------
T ss_pred             CCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHhCHHHHHHHHHHc-------------------CCCCCccCcCc
Confidence            9999999999999998    899999999999999998887766333222                   12245667777


Q ss_pred             CChHH
Q 016470          178 FTPEE  182 (389)
Q Consensus       178 ~tp~~  182 (389)
                      .||.+
T Consensus       145 ~t~~~  149 (156)
T 1bi7_B          145 IDAAE  149 (156)
T ss_dssp             -----
T ss_pred             Ccccc
Confidence            77765

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.86  E-value=5e-22  Score=168.40  Aligned_cols=122  Identities=13%  Similarity=0.071  Sum_probs=98.0

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCC-HHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAET-PLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~t-pLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++|+++|..+   ..+.+|||.|+ .|+.+   .|+++|++++.+|..|.| |||+|+..|+.+++++|+ ++
T Consensus        26 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll-~~  100 (156)
T 1bi7_B           26 EEVRALLEAGANPNAPN---SYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RA  100 (156)
T ss_dssp             HHHHHHHTTTCCTTCCC---SSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH-HH
T ss_pred             HHHHHHHHcCCCCCCCC---CCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHH-Hc
Confidence            78999999999999887   56678899885 77766   899999999999999999 999999999999999999 67


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMT  132 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA  132 (389)
                      |++++.+|.+|+||||+|+.+|+.+++++|+++|++    ++.+|..|+||.+-+
T Consensus       101 ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~~~~~  151 (156)
T 1bi7_B          101 GARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGG----TRGSNHARIDAAEGP  151 (156)
T ss_dssp             TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------------
T ss_pred             CCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCC----CCccCcCcCcccccC
Confidence            999999999999999999999999999999999999    999999999998743

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.86  E-value=9.2e-23  Score=188.69  Aligned_cols=136  Identities=18%  Similarity=0.225  Sum_probs=119.1

Q ss_pred             CHHHHHHHhCCCCC-------cc--ccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcC--------------CC
Q 016470            1 MELARFLIRRDTSW-------EI--TDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAID--------------NA   54 (389)
Q Consensus         1 ~eiv~~Ll~~ga~v-------n~--~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~--------------~G   54 (389)
                      .|++++|+++|+++       |.  .+.+ ..+.||||+|+..|+.+   +|+++|++++.+|.              .|
T Consensus        70 ~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g  148 (273)
T 2pnn_A           70 NDTIALLLDVARKTDSLKQFVNASYTDSY-YKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFG  148 (273)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHTCCCCSTT-TTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSC
T ss_pred             hHHHHHHHHhhccccchhHHhhccccccc-CCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCC
Confidence            47999999998763       22  1111 35678899999999987   89999999999987              79


Q ss_pred             CCHHHHHHHcCCHHHHHHHHHH--CCCcccccCCCCCcHHHHHHHcCC---------hhhHHHHHhcCCccccccc----
Q 016470           55 ETPLFLATKSGCIEIVKEIFNV--YPQAVEHIDDEGRNILHVAIKYRQ---------LEIFELVIQMEVPMRRLVR----  119 (389)
Q Consensus        55 ~tpLh~Aa~~g~~~~v~~Ll~~--~~~~~~~~d~~G~t~Lh~A~~~g~---------~~iv~~Ll~~~~~~~~l~~----  119 (389)
                      .||||+|+..|+.+++++|++.  +|++++.+|.+|+||||+|+..|+         .+++++|+++|++    ++    
T Consensus       149 ~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~----~n~~~~  224 (273)
T 2pnn_A          149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAK----LHPTLK  224 (273)
T ss_dssp             BSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHH----HCTTCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhh----cccccc
Confidence            9999999999999999999933  899999999999999999999998         7999999999988    65    


Q ss_pred             ---ccccccccccccccccCCCCcc
Q 016470          120 ---KIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       120 ---~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                         .+|.+|+||||+|++.++.+++
T Consensus       225 ~~~~~d~~g~TpL~~A~~~g~~~iv  249 (273)
T 2pnn_A          225 LEEITNRKGLTPLALAASSGKIGVL  249 (273)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccCCCCCCHHHHHHHhChHHHH
Confidence               5899999999999999988776

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.86  E-value=3.3e-22  Score=190.52  Aligned_cols=129  Identities=12%  Similarity=0.136  Sum_probs=112.5

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCC------chhhhhcC-CCCCCCcCCCCCHHHHHHH----cCCHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPN------ASSVDQKG-IGESSAIDNAETPLFLATK----SGCIEI   69 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~------~~~Ll~~g-a~~n~~d~~G~tpLh~Aa~----~g~~~~   69 (389)
                      .|+|++|+++|+++|.++   ..+.||||+|+..|+      ++.|++++ ++++.+|..|+||||+|+.    .|+.++
T Consensus       144 ~~~v~~Ll~~Gad~n~~d---~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~  220 (327)
T 1sw6_A          144 LELVKHLVKHGSNRLYGD---NMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAA  220 (327)
T ss_dssp             HHHHHHHHHTTCCTTBCC---TTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHH
T ss_pred             HHHHHHHHHcCCCCCCcC---CCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHH
Confidence            379999999999999888   567788999999866      24677776 7899999999999999999    899999


Q ss_pred             HHHHHHHC-------------------CC-------------------------cccccCCCCCcHHHHHHHcCChhhHH
Q 016470           70 VKEIFNVY-------------------PQ-------------------------AVEHIDDEGRNILHVAIKYRQLEIFE  105 (389)
Q Consensus        70 v~~Ll~~~-------------------~~-------------------------~~~~~d~~G~t~Lh~A~~~g~~~iv~  105 (389)
                      ++.|++..                   ++                         +++.+|.+|+||||+|+.+|+.++++
T Consensus       221 v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~  300 (327)
T 1sw6_A          221 AKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVD  300 (327)
T ss_dssp             HHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            99998431                   11                         47888999999999999999999999


Q ss_pred             HHHhcCCcccccccccccccccccccccccC
Q 016470          106 LVIQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus       106 ~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~  136 (389)
                      +|+++|++    ++.+|.+|+||||+|++.|
T Consensus       301 ~Ll~~Gad----~~~~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          301 ALLDYGAD----PFIANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHTTCC----TTCCCTTSCCGGGGTCC--
T ss_pred             HHHHcCCC----CcccCCCCCCHHHHHHhcC
Confidence            99999999    9999999999999999764

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.86  E-value=1.5e-22  Score=189.01  Aligned_cols=92  Identities=13%  Similarity=0.108  Sum_probs=69.7

Q ss_pred             CCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccc
Q 016470           46 GESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGG  125 (389)
Q Consensus        46 ~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G  125 (389)
                      ++|.+|.+|.||||+|+..|+.+++++|+ +.|++++.+|  |+||||+|+.+|+.+++++|+++|++    ++.+|.+|
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~----~~~~d~~g   95 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLL-NAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLD----DSQFDDKG   95 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCC----TTCCCTTS
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHH-hCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCC
Confidence            56777777888888888888888888777 5677776663  77888888888888888888887777    77777778


Q ss_pred             ccccccccccCCCCccccC
Q 016470          126 NTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus       126 ~TpLhlA~~~~~~~~~~~l  144 (389)
                      +||||+|+..++.++++.+
T Consensus        96 ~t~L~~A~~~g~~~~v~~L  114 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLF  114 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHH
Confidence            8888888777776666443

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.86  E-value=2.3e-22  Score=169.95  Aligned_cols=138  Identities=16%  Similarity=0.162  Sum_probs=120.4

Q ss_pred             chhhhhhhcCCCch---hhhhc-CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCC
Q 016470           25 KPKIHRYGANPNAS---SVDQK-GIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        25 ~~~Lh~a~~~~~~~---~Ll~~-ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  100 (389)
                      .++||.|+..|+.+   .|+++ +.+++.+|..|.||||+ +..|+.+++++|+ +.|++++.+|..|+||||+|+.+|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            3 GDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             chHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            46799999999988   56666 45999999999999999 9999999999999 7899999999999999999999999


Q ss_pred             hhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCCh
Q 016470          101 LEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTP  180 (389)
Q Consensus       101 ~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp  180 (389)
                      .+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+..                 .   ...+.+|.+|.||
T Consensus        81 ~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----------------~---~~~~~~~~~g~t~  136 (156)
T 1bd8_A           81 LDTLKVLVEHGAD----VNVPDGTGALPIHLAVQEGHTAVVSFLAA-----------------E---SDLHRRDARGLTP  136 (156)
T ss_dssp             HHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHHTCHHHHHHHHT-----------------T---SCTTCCCTTSCCH
T ss_pred             HHHHHHHHHcCCC----CCCcCCCCCcHHHHHHHhChHHHHHHHHh-----------------c---cCCCCcCCCCCCH
Confidence            9999999999999    99999999999999999987766522111                 1   2357789999999


Q ss_pred             HHHHHhhh
Q 016470          181 EELFATAN  188 (389)
Q Consensus       181 ~~l~~~~~  188 (389)
                      ++++.+.+
T Consensus       137 l~~A~~~~  144 (156)
T 1bd8_A          137 LELALQRG  144 (156)
T ss_dssp             HHHHHHSC
T ss_pred             HHHHHHcC
Confidence            99998765

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.86  E-value=7.2e-22  Score=191.50  Aligned_cols=178  Identities=14%  Similarity=0.109  Sum_probs=128.7

Q ss_pred             HHHHHHhCCCCCccccccccCCchhhhhhhc--CCCch--------hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHH
Q 016470            3 LARFLIRRDTSWEITDSIQDQSKPKIHRYGA--NPNAS--------SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         3 iv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~--~~~~~--------~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      ++++|++.+.+.....   ++.++.-.-+..  ...++        .|+++|+++|.+|.+|.||||+|+..|+.+++++
T Consensus       108 ~~~~L~~~~~n~~d~~---~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~  184 (373)
T 2fo1_E          108 ITEPITRESVNIIDPR---HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAY  184 (373)
T ss_dssp             CCSCCSTTTTTTCCCS---SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHHhccccccccCCc---CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHH
Confidence            4455566665544433   344455443322  22222        5679999999999999999999999999999999


Q ss_pred             HHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcC---CcccccccccccccccccccccccC---CCCccccCC-
Q 016470           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQME---VPMRRLVRKIDNGGNTLLHMTGIKR---SDYVPEKME-  145 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~---~~~~~l~~~~d~~G~TpLhlA~~~~---~~~~~~~l~-  145 (389)
                      |+ ++|++++.+|..|+||||+|+.+|+.+++++|++++   ++    ++.+|.+|+||||+|+..+   +.++++.+. 
T Consensus       185 Ll-~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~  259 (373)
T 2fo1_E          185 LM-KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD----IEELDRNGMTALMIVAHNEGRDQVASAKLLVE  259 (373)
T ss_dssp             HH-HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT----TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH
T ss_pred             HH-HCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC----hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHH
Confidence            99 789999999999999999999999999999999987   56    8999999999999999876   444433221 


Q ss_pred             --------------------CchhhhhHHhhHHHHHHhhc--cchhhhhcccCCCChHHHHHhhh
Q 016470          146 --------------------GPALVLQEELLWYERVEEVS--MPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       146 --------------------~~~~~l~~~l~~~~~v~~~~--~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                                          ...+.........+.++.+.  .+...+.+|.+|.||++++...+
T Consensus       260 ~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g  324 (373)
T 2fo1_E          260 KGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEG  324 (373)
T ss_dssp             HTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcC
Confidence                                12222222222223333322  12456788999999999987654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.85  E-value=2.1e-21  Score=181.38  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=106.4

Q ss_pred             CCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcC
Q 016470           23 QSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g   99 (389)
                      .+.++||.|+..|+.+   .|+++|+++|.+|.+|.||||+|+..|+.+++++|+ ++|++++.+|..|+||||+|+.+|
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV-ENGANINQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcC
Confidence            3457799999999987   889999999999999999999999999999999999 789999999999999999999999


Q ss_pred             ChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470          100 QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      +.+++++|+++|++    ++.+|.+|.||||+|+..++.+++
T Consensus       118 ~~~~v~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~  155 (299)
T 1s70_B          118 YLDIAEYLISQGAH----VGAVNSEGDTPLDIAEEEAMEELL  155 (299)
T ss_dssp             CHHHHHHHHHTTCC----TTCCCTTSCCHHHHCCSHHHHHHH
T ss_pred             CHHHHHHHHhCCCC----CCCcCCCCCCHHHHHHhcchHHHH
Confidence            99999999999999    999999999999999987766554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.85  E-value=1.2e-22  Score=177.91  Aligned_cols=131  Identities=14%  Similarity=0.087  Sum_probs=112.3

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCC-------chhhhhcCCCCCCCcCCCCCHHHHHHHcCC------HH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPN-------ASSVDQKGIGESSAIDNAETPLFLATKSGC------IE   68 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~-------~~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~------~~   68 (389)
                      +.++.+++.|.+  ..+  ...|.||||+|+..++       +++|+++|+|+|.+|.+|+||||+|+..|+      .+
T Consensus        20 ~~~~~l~~~~~~--~~~--~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~   95 (186)
T 3t8k_A           20 EDFLELFEKGYE--DKE--SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTE   95 (186)
T ss_dssp             HHHHHHHHHSSS--CHH--HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHhcCcc--ccc--ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHH
Confidence            456677776644  333  2446788999999886       338999999999999999999999999987      68


Q ss_pred             HHHHHHHHCCCcccccCCCCC-cHHHHHHHcCC-----hhhHHHHHh-cCCcccccccccccccccccccccccCCCCcc
Q 016470           69 IVKEIFNVYPQAVEHIDDEGR-NILHVAIKYRQ-----LEIFELVIQ-MEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        69 ~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A~~~g~-----~~iv~~Ll~-~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      ++++|+ ++|++++.+|.+|+ ||||+|+..+.     .+++++|++ +|++    ++.+|.+|+||||+|++.++.+++
T Consensus        96 iv~~Ll-~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad----~~~~d~~G~TpL~~A~~~~~~~~v  170 (186)
T 3t8k_A           96 LCKIFL-EKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ----LLIKDKWGLTALEFVKRCQKPIAL  170 (186)
T ss_dssp             HHHHHH-HTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC----TTCCCTTSCCHHHHHHTTTCHHHH
T ss_pred             HHHHHH-HCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC----CcccCCCCCCHHHHHHHcCCHHHH
Confidence            899999 88999999999999 99999999554     469999999 9999    999999999999999999887665

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.85  E-value=3.9e-22  Score=192.14  Aligned_cols=134  Identities=16%  Similarity=0.120  Sum_probs=120.2

Q ss_pred             HHHHHHHhC----CCCCcc-----------------ccccccCCchhhhhhhcCC--Cch---hhhhcCCCCCCCcCCCC
Q 016470            2 ELARFLIRR----DTSWEI-----------------TDSIQDQSKPKIHRYGANP--NAS---SVDQKGIGESSAIDNAE   55 (389)
Q Consensus         2 eiv~~Ll~~----ga~vn~-----------------~~~~~~~~~~~Lh~a~~~~--~~~---~Ll~~ga~~n~~d~~G~   55 (389)
                      |++++|+++    |++++.                 .+   ..+.||||.|+..|  +.+   .|+++|++++.+|..|.
T Consensus        98 ~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~  174 (364)
T 3ljn_A           98 DLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKH---CKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE  174 (364)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEE---ESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred             HHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCC---CCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC
Confidence            577777777    666665                 55   55678899999999  766   89999999999999999


Q ss_pred             CHHHHHHHcCCHHHHHHHHHHCCCc-----ccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccc
Q 016470           56 TPLFLATKSGCIEIVKEIFNVYPQA-----VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLH  130 (389)
Q Consensus        56 tpLh~Aa~~g~~~~v~~Ll~~~~~~-----~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLh  130 (389)
                      ||||+|+..|+.+++++|+ +++++     ++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||
T Consensus       175 t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad----~~~~d~~g~tpL~  249 (364)
T 3ljn_A          175 TPLMRAMEFRNREALDLMM-DTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID----VNMEDNEHTVPLY  249 (364)
T ss_dssp             CHHHHHHHTTCHHHHHHHH-HHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCC----TTCCCTTSCCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHH-hcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCCCCCCCCCHHH
Confidence            9999999999999999999 66666     999999999999999999999999999999999    9999999999999


Q ss_pred             cccccCCCCcccc
Q 016470          131 MTGIKRSDYVPEK  143 (389)
Q Consensus       131 lA~~~~~~~~~~~  143 (389)
                      +|+..++.++++.
T Consensus       250 ~A~~~g~~~~v~~  262 (364)
T 3ljn_A          250 LSVRAAMVLLTKE  262 (364)
T ss_dssp             HHHHTCCHHHHHH
T ss_pred             HHHHhChHHHHHH
Confidence            9999998887733

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.84  E-value=1.2e-21  Score=170.65  Aligned_cols=110  Identities=16%  Similarity=0.207  Sum_probs=102.4

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccC-CCCCcHHHHHHH
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID-DEGRNILHVAIK   97 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~   97 (389)
                      ..+.||||.|+..|+.+   .|++ |+++|.+|..|+||||+|+..|+.+++++|+ ++|++++.+| .+|+||||+|+.
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHHh
Confidence            35678899999999887   6778 9999999999999999999999999999999 7899999998 899999999999


Q ss_pred             cCChhhHHHHHhcCCcccccccccccccccccccccccCC
Q 016470           98 YRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRS  137 (389)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~  137 (389)
                      .|+.+++++|+++|++    ++.+|.+|+||||+|++.++
T Consensus       120 ~~~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          120 YVRPEVVEALVELGAD----IEVEDERGLTALELAREILK  155 (183)
T ss_dssp             TTCHHHHHHHHHHTCC----TTCCCTTSCCHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCC----CcCCCCCCCCHHHHHHHhcc
Confidence            9999999999999999    99999999999999987543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.84  E-value=1.9e-21  Score=157.49  Aligned_cols=113  Identities=27%  Similarity=0.376  Sum_probs=106.2

Q ss_pred             CchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCC
Q 016470           24 SKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        24 ~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  100 (389)
                      |.||||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++|.+++.+|..|+||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHH-HcCCCCcccCCCCCcHHHHHHHcCh
Confidence            457799999999877   789999999999999999999999999999999999 7899999999999999999999999


Q ss_pred             hhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470          101 LEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       101 ~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      .+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus        81 ~~~~~~Ll~~g~~----~~~~~~~g~t~l~~A~~~~~~~~~  117 (126)
T 1n0r_A           81 LEVVKLLLEAGAD----VNAKDKNGRTPLHLAARNGHLEVV  117 (126)
T ss_dssp             HHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCC----CcccCCCCCCHHHHHHHcCcHHHH
Confidence            9999999999998    999999999999999998876665

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.84  E-value=2.8e-21  Score=180.38  Aligned_cols=133  Identities=14%  Similarity=0.164  Sum_probs=102.6

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..+   ..+.||||.|+..|+.+   .|+++|++++..+ +|.||||+|+..|+.+++++|+ ++|
T Consensus       106 ~~v~~Ll~~ga~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll-~~g  180 (285)
T 3d9h_A          106 SCVKILLKHGAQVNGVT---ADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLI-AYG  180 (285)
T ss_dssp             HHHHHHHHTTCCSSCCC---TTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHCCCCCCCCC---CCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHH-HCC
Confidence            67888888888887776   45567788888877766   7778888876543 4888888888888888888888 677


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccC
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l  144 (389)
                      ++++.+|.+|+||||+|+.+|+.+++++|+++|++    ++ +|.+|+||||+|+..++.++++.+
T Consensus       181 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~-~~~~g~t~L~~A~~~~~~~~v~~L  241 (285)
T 3d9h_A          181 GNIDHKISHLGTPLYLACENQQRACVKKLLESGAD----VN-QGKGQDSPLHAVVRTASEELACLL  241 (285)
T ss_dssp             CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC----TT-CCBTTBCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC----CC-CCCCCCCHHHHHHHcCCHHHHHHH
Confidence            78888888888888888888888888888888877    66 377788888888887776666433

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.83  E-value=1.4e-20  Score=155.55  Aligned_cols=107  Identities=14%  Similarity=0.090  Sum_probs=100.6

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCC-CCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDN-AETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~-G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++|+++|..+   ..+.||||+|+. ++.+   .|+++|++++.+|.. |.||||+|+..|+.+++++|+ ++
T Consensus        26 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll-~~  100 (136)
T 1d9s_A           26 ETVRQLLEAGADPNALN---RFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-RA  100 (136)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHcCCCcCCcC---CCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-Hc
Confidence            78999999999999887   567788999999 8877   899999999999999 999999999999999999999 88


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                      |++++.+|..|+||||+|+.+|+.+++++|+++|++
T Consensus       101 ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          101 GARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999874

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.83  E-value=1.9e-21  Score=160.93  Aligned_cols=120  Identities=22%  Similarity=0.223  Sum_probs=102.5

Q ss_pred             CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccc
Q 016470           44 GIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDN  123 (389)
Q Consensus        44 ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~  123 (389)
                      |+|+ .+|.+|+||||+|+..|+.+++++|+ +.|++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~   74 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL----VNTTGY   74 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCG
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc----ccCcCC
Confidence            6788 78999999999999999999999999 78999999999999999999999999999999999998    999999


Q ss_pred             ccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          124 GGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       124 ~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      +|+||||+|+..++.++++.+.                 +  .....+.+|.+|.||++++....
T Consensus        75 ~g~t~L~~A~~~~~~~~v~~Ll-----------------~--~ga~~~~~~~~g~tpl~~A~~~~  120 (137)
T 3c5r_A           75 QNDSPLHDAAKNGHVDIVKLLL-----------------S--YGASRNAVNIFGLRPVDYTDDES  120 (137)
T ss_dssp             GGCCHHHHHHHTTCHHHHHHHH-----------------H--TTCCTTCCCTTSCCGGGGCCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHH-----------------H--cCCCCCCCCCCCCCHHHHHhhcc
Confidence            9999999999998776652211                 1  12235788999999999987654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.83  E-value=3.6e-21  Score=168.51  Aligned_cols=153  Identities=8%  Similarity=-0.011  Sum_probs=117.6

Q ss_pred             hhhhhhhcCCCch---hhhhcCCCCCCCc-CCCCCHHHHHHHcCCH----HHHHHHHHHCCCcccccCCCCCcHHHHHHH
Q 016470           26 PKIHRYGANPNAS---SVDQKGIGESSAI-DNAETPLFLATKSGCI----EIVKEIFNVYPQAVEHIDDEGRNILHVAIK   97 (389)
Q Consensus        26 ~~Lh~a~~~~~~~---~Ll~~ga~~n~~d-~~G~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~   97 (389)
                      +++|.|+..|+.+   .+++.+  ++.+| ..|+||||+|+.+|+.    +++++|+ +.|++++.+|.+|+||||+|+.
T Consensus         8 ~~l~~Aa~~g~~~~~~~l~~~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll-~~Gadvn~~d~~g~TpLh~a~~   84 (186)
T 3t8k_A            8 RTVSAAAMLGTYEDFLELFEKG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLI-NKGADIKSRTKEGTTLFFPLFQ   84 (186)
T ss_dssp             SSHHHHHHHSCHHHHHHHHHHS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHH-HTTCCSSCCCTTCCCTHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHhcC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHH
Confidence            4499999999988   344444  55566 7799999999999975    5899999 8899999999999999999999


Q ss_pred             cCC------hhhHHHHHhcCCcccccccccccccc-cccccccccCCCCccccCCCchhhhhHHhhHHHHHHh-hc-cch
Q 016470           98 YRQ------LEIFELVIQMEVPMRRLVRKIDNGGN-TLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEE-VS-MPH  168 (389)
Q Consensus        98 ~g~------~~iv~~Ll~~~~~~~~l~~~~d~~G~-TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~-~~-~~~  168 (389)
                      .|+      .+++++|+++|++    +|.+|.+|+ ||||+|+..+.....               ..+.++. +. ...
T Consensus        85 ~~~~~~~~~~~iv~~Ll~~Gad----in~~d~~g~ttpLh~A~~~~~~~~~---------------~~~iv~~Ll~~~ga  145 (186)
T 3t8k_A           85 GGGNDITGTTELCKIFLEKGAD----ITALYKPYKIVVFKNIFNYFVDENE---------------MIPLYKLIFSQSGL  145 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCC----SSSCBGGGTBCTTGGGGGCCSCHHH---------------HHHHHHHHHTSTTC
T ss_pred             cCCcchhhHHHHHHHHHHCCCC----CCccCCCcCchHHHHHHHcCCChhh---------------HHHHHHHHHHhcCC
Confidence            997      4789999999999    999999999 999999985432100               0011111 12 345


Q ss_pred             hhhhcccCCCChHHHHHhhhh-hHHHhHHHHHH
Q 016470          169 FRNHRNNMGFTPEELFATANN-ELRAQSKEWLI  200 (389)
Q Consensus       169 ~~~~~n~~g~tp~~l~~~~~~-~l~~~~~e~~~  200 (389)
                      ..+.+|++|+||++++.+.+. +..+...++.+
T Consensus       146 d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~  178 (186)
T 3t8k_A          146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK  178 (186)
T ss_dssp             CTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHH
Confidence            578999999999999988653 33444444444

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.83  E-value=6e-21  Score=171.75  Aligned_cols=136  Identities=20%  Similarity=0.209  Sum_probs=98.8

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..+  .+.+.+|||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.++++.|+ +.+
T Consensus        56 ~~v~~Ll~~~~~~~~~~--~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~~  132 (240)
T 3eu9_A           56 DLVKYYISKGAIVDQLG--GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI-AKG  132 (240)
T ss_dssp             HHHHHHHHTTCCTTCCB--TTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCcchhhc--CCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHH-hcC
Confidence            67788888887766444  233566688877777765   677778888777778888888888888888888777 667


Q ss_pred             CcccccCCCCCcHHHHHHHcCC-hhhHHHHHhcCCccccccccccc-ccccccccccccCCCCccccC
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQ-LEIFELVIQMEVPMRRLVRKIDN-GGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~-~~iv~~Ll~~~~~~~~l~~~~d~-~G~TpLhlA~~~~~~~~~~~l  144 (389)
                      ++++.+|..|+||||+|+..++ .+++++|++.|++    ++.++. +|+||||+|+..++.++++.+
T Consensus       133 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~L  196 (240)
T 3eu9_A          133 QDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS----VNLGDKYHKNTALHWAVLAGNTTVISLL  196 (240)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC----TTCCCTTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             CCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC----cchhhccCCCcHHHHHHHcCCHHHHHHH
Confidence            7777777777777777776555 6777777777777    677665 777777777777766655443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.82  E-value=2e-21  Score=174.28  Aligned_cols=119  Identities=16%  Similarity=0.167  Sum_probs=107.8

Q ss_pred             CCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcC
Q 016470           23 QSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYR   99 (389)
Q Consensus        23 ~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g   99 (389)
                      .+.++||.|+..|+.+   .|+++|++++.+|..|+||||+|+..|+.+++++|++..|++++.+|.+|+||||+|+.+|
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           72 SIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             EESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcC
Confidence            4567899999999877   8899999999999999999999999999999999994449999999999999999999999


Q ss_pred             ChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCC
Q 016470          100 QLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKME  145 (389)
Q Consensus       100 ~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~  145 (389)
                      +.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+.
T Consensus       152 ~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~l~~l~  193 (222)
T 3ehr_A          152 YADIVQLLLAKGAR----TDLRNIEKKLAFDMATNAACASLLKKKQ  193 (222)
T ss_dssp             CHHHHHHHHHHTCC----SCCCCTTSCCHHHHCCSHHHHHHHC---
T ss_pred             CHHHHHHHHHcCCC----CccccCCCCCHHHHhcchhHHHHHHHHh
Confidence            99999999999999    9999999999999999987776664443

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=1.5e-20  Score=177.17  Aligned_cols=126  Identities=15%  Similarity=0.024  Sum_probs=104.2

Q ss_pred             HHHHHHHhCCCCCccccc---cccCCchhhhhhhcC---CCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDS---IQDQSKPKIHRYGAN---PNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~---~~~~~~~~Lh~a~~~---~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +.++.|+++|++++....   ....+.||||+|+..   +..+   +|+++|+++|.+|.+|+||||+|+..|+.+++++
T Consensus       165 ~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~  244 (301)
T 2b0o_E          165 LSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL  244 (301)
T ss_dssp             HHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            578889999999887310   125677889999986   5555   8999999999999999999999999999999999


Q ss_pred             HHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCC
Q 016470           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSD  138 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~  138 (389)
                      |+ ++|++++.+|.+|+||||+|+..|+.+++++|+++|++          .|+||||+|+..|+.
T Consensus       245 Ll-~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          245 LL-KGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG----------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HH-HTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------TTSSCCC--------
T ss_pred             HH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------CCCChhHHHHhcCCc
Confidence            99 78999999999999999999999999999999998754          589999999988763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.82  E-value=3.4e-20  Score=169.11  Aligned_cols=108  Identities=17%  Similarity=0.218  Sum_probs=101.0

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccC-CCCCcHHHHHHH
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID-DEGRNILHVAIK   97 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~   97 (389)
                      ..+.||||.|+..|+.+   .|++ |+++|.+|..|+||||+|+..|+.+++++|+ ++|++++.+| ..|+||||+|+.
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHH-HTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCcCCCCCCCCHHHHHHH
Confidence            35678899999999987   6777 9999999999999999999999999999999 8899999998 889999999999


Q ss_pred             cCChhhHHHHHhcCCccccccccccccccccccccccc
Q 016470           98 YRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIK  135 (389)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~  135 (389)
                      +|+.+++++|+++|++    ++.+|.+|+||||+|+..
T Consensus       121 ~g~~~~v~~Ll~~ga~----~~~~d~~g~t~l~~A~~~  154 (244)
T 3ui2_A          121 YVRPEVVEALVELGAD----IEVEDERGLTALELAREI  154 (244)
T ss_dssp             TTCHHHHHHHHHTTCC----TTCCCTTCCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC----CCCCCCCCCcHHHHHHHH
Confidence            9999999999999999    999999999999999863

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.81  E-value=6.6e-20  Score=151.57  Aligned_cols=106  Identities=17%  Similarity=0.215  Sum_probs=99.1

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..|   ..+.||||.|+..++.+   .|+++|+++|.+|..|.||||+|+..|+.+++++|+ ++|
T Consensus        28 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~g  103 (136)
T 2jab_A           28 DEVRILMANGADVNAKD---EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-KHG  103 (136)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCCCcC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            78999999999999887   56678899999999877   889999999999999999999999999999999999 789


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcC
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQME  111 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~  111 (389)
                      ++++.+|.+|+||||+|+.+|+.+++++|+++|
T Consensus       104 ~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          104 ADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999999999875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.81  E-value=1.6e-20  Score=178.85  Aligned_cols=129  Identities=14%  Similarity=0.205  Sum_probs=111.4

Q ss_pred             HHHHHHHh-CCCCCccccccccCCchhhhhhhcC---CCc----hhhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHH
Q 016470            2 ELARFLIR-RDTSWEITDSIQDQSKPKIHRYGAN---PNA----SSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEI   73 (389)
Q Consensus         2 eiv~~Ll~-~ga~vn~~~~~~~~~~~~Lh~a~~~---~~~----~~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~L   73 (389)
                      |++++|++ .|+++|..+   ..+.+++|.++..   +..    ++|+++|+++|.+|.+|+||||+|+..|+.++++.|
T Consensus       182 ~~v~~LL~~~gad~n~~d---~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~L  258 (337)
T 4g8k_A          182 EVLKILLDEMGADVNACD---NMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL  258 (337)
T ss_dssp             HHHHHHHHHSCCCTTCCC---TTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhccCCCcCccC---CCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHH
Confidence            78999995 699999888   5556667755433   332    278999999999999999999999999999999999


Q ss_pred             HHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccc
Q 016470           74 FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE  142 (389)
Q Consensus        74 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~  142 (389)
                      ++..+++++.+|.+|+||||+|+++|+.+++++|+++|++    +|.+     ||||+|++.++.++++
T Consensus       259 l~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd----~n~~-----~~L~~A~~~~~~~iv~  318 (337)
T 4g8k_A          259 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TDCG-----DLVMTARRNYDHSLVK  318 (337)
T ss_dssp             HTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS----STTC-----CHHHHHHHTTCHHHHH
T ss_pred             HHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCC-----CHHHHHHHcCCHHHHH
Confidence            9667899999999999999999999999999999999998    6654     5999999999877763

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.81  E-value=3.2e-20  Score=168.58  Aligned_cols=128  Identities=12%  Similarity=0.078  Sum_probs=115.7

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|+++|..|   ..+.||||+|+..|+.+   .|+++|+++|.+|.+|+||||+|+..|+.+++++|+ ++|
T Consensus        51 ~~v~~Ll~~g~~~~~~d---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~g  126 (239)
T 1ycs_B           51 DLVQRIIYEVDDPSLPN---DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV-ESG  126 (239)
T ss_dssp             HHHHHHTSTTSSCCCCC---TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCCCcC---CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcC
Confidence            78999999999999888   56778899999999877   899999999999999999999999999999999999 889


Q ss_pred             CcccccCCCCC-cHHHHH--HHcCChhhHHHHHhcCCccccccccc---------ccccccccccccccCC
Q 016470           79 QAVEHIDDEGR-NILHVA--IKYRQLEIFELVIQMEVPMRRLVRKI---------DNGGNTLLHMTGIKRS  137 (389)
Q Consensus        79 ~~~~~~d~~G~-t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~l~~~~---------d~~G~TpLhlA~~~~~  137 (389)
                      ++++.+|..|. ||||+|  +..|+.+++++|+++|++    ++.+         |..|.++++++.+.|.
T Consensus       127 a~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~----~~~~~~~~~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          127 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEK----MGIMNKGVIYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHH----TTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred             CCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhc----ccccccceEEEEeccCCCCCCcccccCCC
Confidence            99999998877 999999  888999999999999887    4443         6778899999888765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.80  E-value=2.6e-19  Score=144.78  Aligned_cols=108  Identities=24%  Similarity=0.390  Sum_probs=101.3

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +++++|+++|++++..+   ..+.+|||.|+..++.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++|
T Consensus        16 ~~v~~Ll~~~~~~~~~~---~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll-~~g   91 (126)
T 1n0r_A           16 EVVKLLLEAGADVNAKD---KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAG   91 (126)
T ss_dssp             HHHHHHHHHTCCTTCCC---TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCCCcC---CCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHH-HcC
Confidence            78999999999998887   56678899999999877   889999999999999999999999999999999999 789


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                      ++++.+|.+|+||||+|+.+|+.+++++|+++|++
T Consensus        92 ~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           92 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             CCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999875

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=1.5e-19  Score=174.62  Aligned_cols=143  Identities=15%  Similarity=0.117  Sum_probs=107.6

Q ss_pred             CchhhhhhhcC-CCch---hhhhcCCCCCCCc--CCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHH
Q 016470           24 SKPKIHRYGAN-PNAS---SVDQKGIGESSAI--DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIK   97 (389)
Q Consensus        24 ~~~~Lh~a~~~-~~~~---~Ll~~ga~~n~~d--~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~   97 (389)
                      +.++||.|+.. ++.+   .|+++|+|+|..|  .+|.||||+|+..|+.+++++|+ .+|++++.+|.+|+||||+|+.
T Consensus       199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL-~~Gadvn~~d~~G~TpLh~A~~  277 (368)
T 3jue_A          199 PGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL-QNGANVNQADSAGRGPLHHATI  277 (368)
T ss_dssp             HHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHH
Confidence            34579999998 8877   7899999999998  88999999999999999999999 7899999999999999999999


Q ss_pred             cCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCC
Q 016470           98 YRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMG  177 (389)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g  177 (389)
                      .|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.|..      ..          .........+..+
T Consensus       278 ~g~~~~v~~LL~~Gad----~~~~d~~G~TpL~~A~~~g~~~iv~lLl~------~~----------~~~~~~~~~~~~~  337 (368)
T 3jue_A          278 LGHTGLACLFLKRGAD----LGARDSEGRDPLTIAMETANADIVTLLRL------AK----------MREAEAAQGQAGD  337 (368)
T ss_dssp             HTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHH------HH----------C------------
T ss_pred             cCcHHHHHHHHHCcCC----CCCcCCCCCCHHHHHHHCCCHHHHHHHHH------cC----------CCcccccccCCCC
Confidence            9999999999999999    99999999999999999988777632211      10          0111123456678


Q ss_pred             CChHHHHHhh
Q 016470          178 FTPEELFATA  187 (389)
Q Consensus       178 ~tp~~l~~~~  187 (389)
                      .|+++++...
T Consensus       338 ~t~l~i~~~~  347 (368)
T 3jue_A          338 ETYLDIFRDF  347 (368)
T ss_dssp             ----------
T ss_pred             CCHHHHHHHH
Confidence            8888887654

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.78  E-value=4.7e-20  Score=173.70  Aligned_cols=133  Identities=18%  Similarity=0.161  Sum_probs=111.5

Q ss_pred             hhhhhhhcCCCch---hhhhcCCCCCC------CcCCCCCHHHHHHHc---CCHHHHHHHHHHCCCcccccCCCCCcHHH
Q 016470           26 PKIHRYGANPNAS---SVDQKGIGESS------AIDNAETPLFLATKS---GCIEIVKEIFNVYPQAVEHIDDEGRNILH   93 (389)
Q Consensus        26 ~~Lh~a~~~~~~~---~Ll~~ga~~n~------~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh   93 (389)
                      .+||.|+..|+.+   .|++.|++++.      +|..|.||||+|+..   |+.+++++|+ .+|++++.+|.+|+||||
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadvn~~d~~G~TpLh  231 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHH-HHSSCTTCCCTTCCCHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHH-hcCCCCCCCCCCCCCHHH
Confidence            4599999999987   77899999998      689999999999997   8999999999 679999999999999999


Q ss_pred             HHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhc
Q 016470           94 VAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHR  173 (389)
Q Consensus        94 ~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~  173 (389)
                      +|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+      +                   +..
T Consensus       232 ~A~~~g~~~~v~~Ll~~gad----~~~~d~~G~TpL~~A~~~~~~~iv~~L------l-------------------~~g  282 (301)
T 2b0o_E          232 YAALYNQPDCLKLLLKGRAL----VGTVNEAGETALDIARKKHHKECEELL------E-------------------QAQ  282 (301)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC----CSCCCTTSCCHHHHHHHHTCHHHHHHH------H-------------------HHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH------H-------------------Hhc
Confidence            99999999999999999999    999999999999999999887665211      1                   112


Q ss_pred             ccCCCChHHHHHhhh
Q 016470          174 NNMGFTPEELFATAN  188 (389)
Q Consensus       174 n~~g~tp~~l~~~~~  188 (389)
                      ...|.||++++.+.+
T Consensus       283 a~~g~tpLh~A~~~g  297 (301)
T 2b0o_E          283 AGTFAFPLHVDYSWV  297 (301)
T ss_dssp             HHTTSSCCC------
T ss_pred             CCCCCChhHHHHhcC
Confidence            236889999987654

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=4.6e-19  Score=136.57  Aligned_cols=89  Identities=26%  Similarity=0.393  Sum_probs=68.6

Q ss_pred             CchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCC
Q 016470           24 SKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        24 ~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  100 (389)
                      |.||||.|+..|+.+   .|+++|+++|.+|.+|.||||+|+..|+.+++++|+ ++|++++.+|.+|+||||+|+..|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCC
Confidence            346688887777766   677778888888888888888888888888888777 6777788888888888888888888


Q ss_pred             hhhHHHHHhcCCc
Q 016470          101 LEIFELVIQMEVP  113 (389)
Q Consensus       101 ~~iv~~Ll~~~~~  113 (389)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            8888888877753

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.77  E-value=1.1e-19  Score=147.38  Aligned_cols=113  Identities=19%  Similarity=0.150  Sum_probs=95.3

Q ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccccccc
Q 016470           50 AIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLL  129 (389)
Q Consensus        50 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpL  129 (389)
                      .+..|.||||.|+..|+.++++.|+ +.+.+++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+|||
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----~~~~d~~g~tpL   77 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD----INAPDKHHITPL   77 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHH-HTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC----TTCCCTTSCCHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHH-HcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC----CCcCCCCCCCHH
Confidence            3567899999999999999999999 78899999999999999999999999999999999999    999999999999


Q ss_pred             ccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHh
Q 016470          130 HMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       130 hlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~  186 (389)
                      |+|+..++.++++.+.                 +  .....+.+|.+|.||++++..
T Consensus        78 ~~A~~~~~~~~v~~Ll-----------------~--~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           78 LSAVYEGHVSCVKLLL-----------------S--KGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHHTCHHHHHHHH-----------------H--TTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHHHcCCHHHHHHHH-----------------H--cCCCCCCcCCCCCCHHHHhCC
Confidence            9999998766652211                 1  122257889999999998843

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.77  E-value=2.2e-19  Score=138.41  Aligned_cols=84  Identities=32%  Similarity=0.471  Sum_probs=78.8

Q ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccc
Q 016470           53 NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMT  132 (389)
Q Consensus        53 ~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA  132 (389)
                      +|+||||+|+..|+.+++++|+ +.|++++.+|.+|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll-~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~t~l~~A   75 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLA   75 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCccCCCCCCHHHHH
Confidence            5899999999999999999999 78999999999999999999999999999999999999    999999999999999


Q ss_pred             cccCCCCcc
Q 016470          133 GIKRSDYVP  141 (389)
Q Consensus       133 ~~~~~~~~~  141 (389)
                      +..++.+++
T Consensus        76 ~~~~~~~~~   84 (93)
T 1n0q_A           76 ARNGHLEVV   84 (93)
T ss_dssp             HHTTCHHHH
T ss_pred             HHcCCHHHH
Confidence            999887666

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.76  E-value=3.7e-19  Score=142.42  Aligned_cols=103  Identities=25%  Similarity=0.294  Sum_probs=94.9

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHc
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      ..+.++||.|+..|+.+   .|+++|++++.+|..|.||||+|+..|+.+++++|+ ++|++++.+|..|+||||+|+..
T Consensus         7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~g~tpl~~A~~~   85 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AKGADVNARSKDGNTPEHLAKKN   85 (115)
T ss_dssp             CSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHT-TTTCCTTCCCTTCCCTTHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHC
Confidence            55677899999999877   889999999999999999999999999999999999 78999999999999999999999


Q ss_pred             CChhhHHHHHhcCCccccccccccccccccc
Q 016470           99 RQLEIFELVIQMEVPMRRLVRKIDNGGNTLL  129 (389)
Q Consensus        99 g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpL  129 (389)
                      |+.+++++|+++|++    +|.++.+|.||-
T Consensus        86 ~~~~~~~~Ll~~ga~----~n~~~~~~~~~~  112 (115)
T 2l6b_A           86 GHHEIVKLLDAKGAD----VNARSWGSSHHH  112 (115)
T ss_dssp             TCHHHHHHHHTTSSS----HHHHSCCCC---
T ss_pred             CCHHHHHHHHHcCCC----CCcCCccccccc
Confidence            999999999999999    999999999983

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=3.6e-19  Score=165.68  Aligned_cols=112  Identities=15%  Similarity=0.207  Sum_probs=101.9

Q ss_pred             chhhhhhhcCCCch---hhhhcCCCC------CCCcCCCCCHHHHHHHc---CCHHHHHHHHHHCCCcccccCCCCCcHH
Q 016470           25 KPKIHRYGANPNAS---SVDQKGIGE------SSAIDNAETPLFLATKS---GCIEIVKEIFNVYPQAVEHIDDEGRNIL   92 (389)
Q Consensus        25 ~~~Lh~a~~~~~~~---~Ll~~ga~~------n~~d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~L   92 (389)
                      .++||.|+..++.+   .+++.|+++      +..|..|+||||+|+..   |+.+++++|+ ++|++++.+|.+|+|||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll-~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH-HHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHH-HCCCCccccCCCCCCHH
Confidence            34588899999887   678899995      44588999999999999   8999999999 77999999999999999


Q ss_pred             HHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           93 HVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        93 h~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.+++
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad----~~~~d~~g~tpL~~A~~~~~~~~v  254 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKAS----IEIANESGETPLDIAKRLKHEHCE  254 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC----CCCccCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999999999    999999999999999999887766

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=1.9e-18  Score=160.84  Aligned_cols=122  Identities=11%  Similarity=0.010  Sum_probs=104.9

Q ss_pred             HHHHHHHhCCCCCccc---cccccCCchhhhhhhcC---CCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHH
Q 016470            2 ELARFLIRRDTSWEIT---DSIQDQSKPKIHRYGAN---PNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~---~~~~~~~~~~Lh~a~~~---~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +.++.+++.|++++..   +...+.+.||||+|+..   ++.+   +|+++|+++|.+|.+|+||||+|+..|+.+++++
T Consensus       144 ~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~  223 (278)
T 1dcq_A          144 FGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL  223 (278)
T ss_dssp             HHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence            4678899999996633   12225677889999998   6655   8999999999999999999999999999999999


Q ss_pred             HHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccC
Q 016470           73 IFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKR  136 (389)
Q Consensus        73 Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~  136 (389)
                      |+ ++|++++.+|.+|+||||+|+..|+.+++++|+++|++            .+++|.++...
T Consensus       224 Ll-~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------~~~~~~~v~~~  274 (278)
T 1dcq_A          224 LL-RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG------------RFNSHVHVEYE  274 (278)
T ss_dssp             HH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT------------CCCSSCCCCCC
T ss_pred             HH-HcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCCcceeeecc
Confidence            99 79999999999999999999999999999999998864            56777776543

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.74  E-value=5.1e-18  Score=163.90  Aligned_cols=131  Identities=15%  Similarity=0.100  Sum_probs=100.3

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.|+++|+++|..+.+ ..+.||||+|+..|+.+   +|+++|+++|.+|..|+||||+|+..|+.+++++|+ .+|
T Consensus       214 ~~v~~LL~~Gadvn~~~~~-~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL-~~G  291 (368)
T 3jue_A          214 PTMADALAHGADVNWVNGG-QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFL-KRG  291 (368)
T ss_dssp             HHHHHHHHTTCCTTCCCTT-TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HTT
T ss_pred             HHHHHHHHcCCCCCccccc-cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH-HCc
Confidence            6899999999999987743 34567799999999877   899999999999999999999999999999999999 789


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccccccccccccc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIK  135 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~  135 (389)
                      ++++.+|.+|+||||+|+..|+.+++++|++.+.. .......+..+.|+++++...
T Consensus       292 ad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~-~~~~~~~~~~~~t~l~i~~~~  347 (368)
T 3jue_A          292 ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR-EAEAAQGQAGDETYLDIFRDF  347 (368)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred             CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccccccCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999987654 223455667888999887654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.74  E-value=7.9e-19  Score=152.65  Aligned_cols=114  Identities=20%  Similarity=0.261  Sum_probs=98.2

Q ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccc-cccccc
Q 016470           50 AIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKID-NGGNTL  128 (389)
Q Consensus        50 ~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d-~~G~Tp  128 (389)
                      .|.+|.||||.|+..|+.++++.|+ . +.+++.+|.+|+||||+|+.+|+.+++++|+++|++    +|.+| .+|+||
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll-~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~~g~tp  113 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLL-E-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD----LDHRDMRGGLTA  113 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHT-T-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCSSSSCCH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHH-h-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCcCCCCCCCCH
Confidence            3678999999999999999999999 4 889999999999999999999999999999999999    99998 899999


Q ss_pred             cccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       129 LhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      ||+|+..++.++++.+      ++             .....+.+|.+|+||++++.+..
T Consensus       114 L~~A~~~~~~~~v~~L------l~-------------~ga~~~~~d~~g~tpl~~A~~~~  154 (183)
T 3deo_A          114 LHMAAGYVRPEVVEAL------VE-------------LGADIEVEDERGLTALELAREIL  154 (183)
T ss_dssp             HHHHHHTTCHHHHHHH------HH-------------HTCCTTCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHH------HH-------------cCCCCcCCCCCCCCHHHHHHHhc
Confidence            9999999887665221      11             11235688999999999998754

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.74  E-value=8.7e-19  Score=176.30  Aligned_cols=114  Identities=19%  Similarity=0.230  Sum_probs=105.9

Q ss_pred             hhhhhhhcCCCch---hhhhcCCCCCCC------cCCCCCHHHHHHH---cCCHHHHHHHHHHCCCcccccCCCCCcHHH
Q 016470           26 PKIHRYGANPNAS---SVDQKGIGESSA------IDNAETPLFLATK---SGCIEIVKEIFNVYPQAVEHIDDEGRNILH   93 (389)
Q Consensus        26 ~~Lh~a~~~~~~~---~Ll~~ga~~n~~------d~~G~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh   93 (389)
                      ..||.|+..|+.+   .|+++|+|+|.+      |..|.||||+|+.   .|+.+++++|+ ++|+++|.+|.+|+||||
T Consensus       134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll-~~ga~vn~~d~~g~TpLh  212 (497)
T 3lvq_E          134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-QNGGHLDAKAADGNTALH  212 (497)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHH-HHSCCTTCCCSSSCCHHH
T ss_pred             HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHH-HcCCCCCccCCCCCcHHH
Confidence            4599999999987   889999999987      8899999999976   99999999999 789999999999999999


Q ss_pred             HHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccC
Q 016470           94 VAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus        94 ~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l  144 (389)
                      +|+.+|+.+++++|+++|++    ++.+|.+|+||||+|+..++.++++.+
T Consensus       213 ~A~~~g~~~~v~~Ll~~ga~----~~~~d~~g~tpl~~A~~~~~~~~~~~L  259 (497)
T 3lvq_E          213 YAALYNQPDCLKLLLKGRAL----VGTVNEAGETALDIARKKHHKECEELL  259 (497)
T ss_dssp             HHTTTTCHHHHHHHHHTCCC----CSCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            99999999999999999999    999999999999999999988877443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.73  E-value=1.7e-18  Score=154.97  Aligned_cols=108  Identities=10%  Similarity=0.025  Sum_probs=94.1

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhc-CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQK-GIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~-ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +++++|+++|+++|..+   ..+.||||+|+..|+.+   .|+++ |+++|.+|..|.||||+|+..|+.+++++|+ ++
T Consensus        87 ~~v~~Ll~~g~~~~~~~---~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~  162 (222)
T 3ehr_A           87 SWLRECLDNRVGVNGLD---KAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLL-AK  162 (222)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HH
T ss_pred             HHHHHHHhCCCCccccC---CCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHH-Hc
Confidence            78999999999999888   56778899999999877   78888 9999999999999999999999999999999 66


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                      |++++.+|.+|+||||+|+..|+.++++.|++.++.
T Consensus       163 ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~  198 (222)
T 3ehr_A          163 GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAV  198 (222)
T ss_dssp             TCCSCCCCTTSCCHHHHCCSHHHHHHHC--------
T ss_pred             CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchh
Confidence            999999999999999999999999999999999887

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.72  E-value=1.2e-18  Score=139.36  Aligned_cols=109  Identities=23%  Similarity=0.236  Sum_probs=92.1

Q ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccc
Q 016470           49 SAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        49 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~Tp  128 (389)
                      .+|.+|+||||+|+..|+.++++.|+ +.+++++.+|..|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~d~~g~tp   78 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD----VNARSKDGNTP   78 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHT-TTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC----TTCCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----CcccCCCCCCH
Confidence            47899999999999999999999999 78999999999999999999999999999999999999    99999999999


Q ss_pred             cccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChH
Q 016470          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPE  181 (389)
Q Consensus       129 LhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~  181 (389)
                      ||+|+..++.++++.+..                   .....+.++..|.+|.
T Consensus        79 l~~A~~~~~~~~~~~Ll~-------------------~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDA-------------------KGADVNARSWGSSHHH  112 (115)
T ss_dssp             THHHHTTTCHHHHHHHHT-------------------TSSSHHHHSCCCC---
T ss_pred             HHHHHHCCCHHHHHHHHH-------------------cCCCCCcCCccccccc
Confidence            999999987766622211                   1222566777787775

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.70  E-value=5.1e-18  Score=154.68  Aligned_cols=114  Identities=13%  Similarity=0.105  Sum_probs=98.5

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCc-CCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAI-DNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d-~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      ++++.|++ |+++|..|   ..+.||||.|+..|+.+   +|+++|+++|.+| ..|.||||+|+..|+.+++++|+ .+
T Consensus        59 ~~v~~Ll~-~~~~~~~d---~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~  133 (244)
T 3ui2_A           59 QALSQLLE-DRDVDAVD---ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-EL  133 (244)
T ss_dssp             HHHHHTTT-TCCTTCBC---TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHc-CCCCCCcC---CCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHH-HC
Confidence            68999999 99999888   56778899999999877   8999999999998 78999999999999999999999 78


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |++++.+|.+|+||||+|+..++                     +..|.||||+|+..++.+++
T Consensus       134 ga~~~~~d~~g~t~l~~A~~~~~---------------------~~~~~~~l~~a~~~g~~~iv  176 (244)
T 3ui2_A          134 GADIEVEDERGLTALELAREILK---------------------TTPKGNPMQFGRRIGLEKVI  176 (244)
T ss_dssp             TCCTTCCCTTCCCHHHHHHHHHT---------------------TCCCSSHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCcHHHHHHHHHh---------------------ccCCCCHHHHHHHcChHHHH
Confidence            99999999999999999985221                     23467788888877766555

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=4.8e-18  Score=135.25  Aligned_cols=90  Identities=20%  Similarity=0.252  Sum_probs=78.2

Q ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccc
Q 016470           47 ESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGN  126 (389)
Q Consensus        47 ~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~  126 (389)
                      .+..|.+|.||||+|+..|+.+++++|+ +.+++++.+|..|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~   91 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD----VXAQDKFGK   91 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSC
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccccccCCC
Confidence            3566888999999999999999999999 77899999999999999999999999999999999998    899999999


Q ss_pred             cccccccccCCCCcc
Q 016470          127 TLLHMTGIKRSDYVP  141 (389)
Q Consensus       127 TpLhlA~~~~~~~~~  141 (389)
                      ||||+|+..++.+++
T Consensus        92 tpl~~A~~~~~~~~~  106 (110)
T 2zgd_A           92 TAFDISIDNGNEDLA  106 (110)
T ss_dssp             CHHHHHHHHTCHHHH
T ss_pred             cHHHHHHHcCCHHHH
Confidence            999999998876655

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.65  E-value=4.3e-18  Score=164.94  Aligned_cols=129  Identities=7%  Similarity=0.023  Sum_probs=83.1

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCC---CCCcCCCCCHHHHHHHcCCHHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGE---SSAIDNAETPLFLATKSGCIEIVKEIFN   75 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~---n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~   75 (389)
                      +++++++++|.+.          .||||.|+..|+.+   .|+++|++.   +..|..|.||||+|++.|+.++|++|+ 
T Consensus        80 ~~~~~l~~~g~~~----------~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll-  148 (376)
T 2aja_A           80 QLWSDAHKKGIKS----------EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC-  148 (376)
T ss_dssp             THHHHHHHHTCCH----------HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred             HHHHHHHHcCCCc----------CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHH-
Confidence            3456666666542          25677777777766   667777622   233445667777777777777777777 


Q ss_pred             HCCCc---ccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccc--ccccccccccccc-ccCCCCccccCCC
Q 016470           76 VYPQA---VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRK--IDNGGNTLLHMTG-IKRSDYVPEKMEG  146 (389)
Q Consensus        76 ~~~~~---~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~--~d~~G~TpLhlA~-~~~~~~~~~~l~~  146 (389)
                      ++|++   .+..+.+ +||||+|+.+|+.+++++|+++|++    ++.  +|.+|+||||+|+ ..|+.++++.+..
T Consensus       149 ~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~----~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~  220 (376)
T 2aja_A          149 ELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPT----EATAMIQAENYYAFRWAAVGRGHHNVINFLLD  220 (376)
T ss_dssp             HSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGG----GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             hCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCc----cchhccCCCCCCHHHHHHHHCCCHHHHHHHHh
Confidence            55543   2222222 7777777777777777777777776    665  7777777777777 7777777765543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.65  E-value=5.7e-18  Score=164.13  Aligned_cols=131  Identities=15%  Similarity=0.048  Sum_probs=104.5

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCC---CCCcCCCCCHHHHHHHcCCHHHHHHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGE---SSAIDNAETPLFLATKSGCIEIVKEIF   74 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~---n~~d~~G~tpLh~Aa~~g~~~~v~~Ll   74 (389)
                      +|++++|+++|+.....+.-...+.+|||.|+..|+.+   +|+++|+|+   +..+.+ .||||+|+..|+.+++++|+
T Consensus       105 ~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll  183 (376)
T 2aja_A          105 SSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLC  183 (376)
T ss_dssp             HHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHH
Confidence            37899999999832211111134456899999999987   899999863   333333 99999999999999999999


Q ss_pred             HHCCCcccc--cCCCCCcHHHHHH-HcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccC
Q 016470           75 NVYPQAVEH--IDDEGRNILHVAI-KYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus        75 ~~~~~~~~~--~d~~G~t~Lh~A~-~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l  144 (389)
                       ++|++++.  +|.+|+||||+|+ .+|+.+++++|+++|+           .|+||||+|+..|+.++++.+
T Consensus       184 -~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-----------~~~taL~~Aa~~g~~evv~lL  244 (376)
T 2aja_A          184 -ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-----------MLAYAEIHEFEYGEKYVNPFI  244 (376)
T ss_dssp             -HSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-----------HHHHHHHCTTTTTTTTHHHHH
T ss_pred             -HcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-----------ccchHHHHHHHCCCHHHHHHH
Confidence             78889887  8999999999999 9999999999998653           289999999999999887443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.62  E-value=7.4e-16  Score=122.44  Aligned_cols=85  Identities=20%  Similarity=0.295  Sum_probs=79.8

Q ss_pred             cCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHc
Q 016470           22 DQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKY   98 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~   98 (389)
                      ..+.++||.|+..|+.+   .|+++|+++|.+|..|.||||+|+..|+.+++++|+ .+|++++.+|..|+||||+|+.+
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll-~~ga~~~~~d~~g~tpl~~A~~~  100 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL-EAGADVXAQDKFGKTAFDISIDN  100 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH-HcCCCccccccCCCcHHHHHHHc
Confidence            45667799999999987   789999999999999999999999999999999999 77999999999999999999999


Q ss_pred             CChhhHHHH
Q 016470           99 RQLEIFELV  107 (389)
Q Consensus        99 g~~~iv~~L  107 (389)
                      |+.+++++|
T Consensus       101 ~~~~~~~~L  109 (110)
T 2zgd_A          101 GNEDLAEIL  109 (110)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHHh
Confidence            999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	389
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	6e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	9e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-07
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 5/76 (6%)

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMR 115
           TPL +A+  G + IVK +      +    + +    LH+A +    E+ + ++Q +    
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK-- 58

Query: 116 RLVRKIDNGGNTLLHM 131
             V        T LH 
Sbjct: 59  --VNAKAKDDQTPLHC 72

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 34/81 (41%), Gaps = 13/81 (16%)

Query: 30  RYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR 89
           + GA+PN    + K           ETPL +A ++G  E+ K +       V     + +
Sbjct: 21  QRGASPNV--SNVKV----------ETPLHMAARAGHTEVAKYLLQ-NKAKVNAKAKDDQ 67

Query: 90  NILHVAIKYRQLEIFELVIQM 110
             LH A +     + +L+++ 
Sbjct: 68  TPLHCAARIGHTNMVKLLLEN 88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-04
 Identities = 16/106 (15%), Positives = 37/106 (34%), Gaps = 1/106 (0%)

Query: 1   MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFL 60
           + +A  LI+     + T  +          YG       + Q     ++      +PL  
Sbjct: 277 VPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 336

Query: 61  ATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFEL 106
           A + G  +IV  +      +   +  +G   L +A +   + + ++
Sbjct: 337 AAQQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDV 381

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (93), Expect = 3e-04
 Identities = 28/180 (15%), Positives = 59/180 (32%), Gaps = 24/180 (13%)

Query: 1   MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNASSVDQKGIGESSAIDNAETPLFL 60
           +++ + L+ R  S                +      A S+ Q G   ++      TPL L
Sbjct: 178 LDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 237

Query: 61  ATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRK 120
           A + G  E+V  + +         +  G   LH+  +   + + +++I+  V     V  
Sbjct: 238 AAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM----VDA 292

Query: 121 IDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTP 180
               G T LH+     +  + + +                          N +  +G++P
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVKFLL-------------------QHQADVNAKTKLGYSP 333

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 12/79 (15%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRN 90
           +GA+ N     ++G          +TPL LA +   + +V+ +       +   D +G+ 
Sbjct: 208 HGADVNV--RGERG----------KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKT 255

Query: 91  ILHVAIKYRQLEIFELVIQ 109
            L +A++ +  +I EL+ +
Sbjct: 256 ALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 30/152 (19%), Positives = 50/152 (32%), Gaps = 18/152 (11%)

Query: 29  HRYGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEG 88
             Y    N +   +    +        T L  A + G +E++K + +     V   D+ G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182

Query: 89  RNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPA 148
           RN L  A+        E +  + +     V      G T L +   K+            
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH----------- 231

Query: 149 LVLQEELLWYERVEEVSMPHFRNHRNNMGFTP 180
           L L + LL  E +E        N  ++ G T 
Sbjct: 232 LGLVQRLLEQEHIE-------INDTDSDGKTA 256

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 11/66 (16%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 49  SAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVI 108
           +A+++    L  A ++  +++V+++           ++ G   LH A++  + +I EL++
Sbjct: 1   AAVED-NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

Query: 109 QMEVPM 114
           +     
Sbjct: 60  RHGADP 65

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 15/104 (14%), Positives = 34/104 (32%), Gaps = 5/104 (4%)

Query: 31  YGANPNASSVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNV--YPQAVEHIDDEG 88
           Y A+ N ++  Q           +E   F+A  +GC   +  +  +    + V+ I  E 
Sbjct: 68  YYAHYNRNAK-QLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAEN 126

Query: 89  RNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMT 132
                +A +   L +   + ++       +  I         + 
Sbjct: 127 YQAFRLAAENGHLHVLNRLCELAPTEI--MAMIQAENYHAFRLA 168

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.9 bits (99), Expect = 2e-05
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 56  TPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL 101
            PL  A        V+E+ +  P  +   D +GR  LH ++ ++  
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 52  DNAETPLFLATKSGCIEIVKEIFNVYPQA---VEHIDDEGRNILHVAIKYRQ 100
           ++ +TPL +A   G +  V  + N++ Q    ++  ++  +  LH+A+    
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 10/46 (21%), Positives = 20/46 (43%)

Query: 86  DEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           ++G   LH+A+    L     ++ +     R +   +N   T LH+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHL 46

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 9/83 (10%)

Query: 55  ETPLFLATK-SGCIEIVKEIFNVYPQAVEHIDDE-GRNILHVAIKYRQLEIFELVIQMEV 112
           E+P+ L T+ +G   I + I     ++V  ID    R +LH        E  E +I  E 
Sbjct: 1   ESPIKLHTEAAGSYAITEPITR---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

Query: 113 PMRRL----VRKIDNGGNTLLHM 131
                    V  +D   NT L +
Sbjct: 58  KECIAAGADVNAMDCDENTPLML 80

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 8e-05
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 4/79 (5%)

Query: 53  NAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEV 112
              T L  A +   + IVK +        +  D++G+  + +A +  ++E+   +IQ   
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGA 245

Query: 113 PMRRLVRKIDNGGNTLLHM 131
                V  +D   +T   +
Sbjct: 246 S----VEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 52  DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
           ++ +TP+ LA + G IE+V  +      +VE +D        +A       I ++  +
Sbjct: 219 EDGKTPIMLAAQEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.0 bits (97), Expect = 5e-05
 Identities = 8/49 (16%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 83  HIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHM 131
           ++ ++G   LH+A+ ++     + ++         +   ++ G T LH+
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAG-HEYLDLQNDLGQTALHL 51

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 2e-04
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 52  DNAETPLFLATKSGCIEIVKEI--FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ 109
           ++ +T L LA        +  +  F+   + ++  +D G+  LH+A    +    E +  
Sbjct: 7   EDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYA 66

Query: 110 MEVPM 114
               +
Sbjct: 67  AGAGV 71

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 52  DNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQME 111
            +  T L +A   G  E++K +       V   D +G   LH A  + + E   ++++  
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 112 VPMRRLVRKIDNGGNTLLHM 131
                 +  ++  G T   +
Sbjct: 256 CD----MEAVNKVGQTAFDV 271

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 14/90 (15%), Positives = 30/90 (33%)

Query: 87  EGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG 146
           +G + LH+AI + +  +   VI+        +   +N   T LH+  I     + E + G
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 147 PALVLQEELLWYERVEEVSMPHFRNHRNNM 176
                +           ++          +
Sbjct: 61  AGCDPELRDFRGNTPLHLACEQGCLASVGV 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	389
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.86
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.85
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.85
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.85
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.85
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.85
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.83
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.82
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.82
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.82
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.81
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.8
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.8
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.79
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.79
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.79
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.78
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.77
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.77
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.76
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.74
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.74
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.72
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.68
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.66
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.59

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.5e-25  Score=195.44  Aligned_cols=163  Identities=17%  Similarity=0.126  Sum_probs=123.0

Q ss_pred             HHH-HHHHhCCCCCccccccccCCchhhhhhhcCCCch------------------------------------hhhhcC
Q 016470            2 ELA-RFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS------------------------------------SVDQKG   44 (389)
Q Consensus         2 eiv-~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~------------------------------------~Ll~~g   44 (389)
                      |.+ ++|.+++.+++.+|   ..|.||||+|+..|+.+                                    .|+++|
T Consensus        17 ~~v~~~l~~~~~~~~~~D---~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~   93 (223)
T d1uoha_          17 EELKESILADKSLATRTD---QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG   93 (223)
T ss_dssp             HHHHHHHHHCGGGGGCCC---TTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCcCcCcC---CCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccC
Confidence            344 44556667777777   56677799888887544                                    466778


Q ss_pred             CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccc
Q 016470           45 IGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNG  124 (389)
Q Consensus        45 a~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~  124 (389)
                      ++++.+|.+|.||||+|+..|+.+++++|+ ++|++++.+|..|.||||+|+..++.+++++|.+.+.+    ++.+|.+
T Consensus        94 ~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll-~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~----i~~~d~~  168 (223)
T d1uoha_          94 AQVNAVNQNGCTPLHYAASKNRHEIAVMLL-EGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS----TNIQDTE  168 (223)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTT
T ss_pred             ceeEeeCCCCCchhhHHHHcCCHHHHHHHH-HCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccce----eeeccCC
Confidence            888888888888888888888888888888 67788888888888888888888888888888888877    8888888


Q ss_pred             cccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhhhhH
Q 016470          125 GNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANNEL  191 (389)
Q Consensus       125 G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~~~l  191 (389)
                      |+||||+|+..++.++++.+.                   ..+..++.+|++|+||++++...+.+.
T Consensus       169 g~TpL~~Aa~~g~~~~v~~LL-------------------~~Gad~~~~d~~g~tpl~~A~~~~~~i  216 (223)
T d1uoha_         169 GNTPLHLACDEERVEEAKLLV-------------------SQGASIYIENKEEKTPLQVAKGGLGLI  216 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHH-------------------HTTCCSCCCCTTSCCHHHHCCTTHHHH
T ss_pred             CCceeccccccCcHHHHHHHH-------------------HCCCCCCCCCCCCCCHHHHHHCCCHHH
Confidence            888888888877665552111                   112336789999999999986655443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.1e-23  Score=168.66  Aligned_cols=105  Identities=16%  Similarity=0.159  Sum_probs=100.3

Q ss_pred             chhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCCh
Q 016470           25 KPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQL  101 (389)
Q Consensus        25 ~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~  101 (389)
                      .+||++|+..|+.+   .|+++|+|+|.+|.+|+||||+|+..|+.+++++++ ..|++++.+|.+|+||||+|+.+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll-~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLL-LKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHH-HSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccc-cccceeeecccccccchhhhhhcCch
Confidence            36799999999988   899999999999999999999999999999999999 88999999999999999999999999


Q ss_pred             hhHHHHHhcCCcccccccccccccccccccccc
Q 016470          102 EIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus       102 ~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~  134 (389)
                      +++++|+++|++    ++.+|.+|+||||+|..
T Consensus        82 ~~v~~Ll~~Gad----~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          82 SCVKLLLSKGAD----KTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HHHHHHHTTCCC----SSSSSSSTCCCCCTCSS
T ss_pred             hhhhhhhccccc----ceeeCCCCCCHHHHHhH
Confidence            999999999999    99999999999999954

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.4e-23  Score=185.18  Aligned_cols=131  Identities=14%  Similarity=0.215  Sum_probs=120.4

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      |++++|+++|++++..|   ..+.||||.|+..|+.+   .|+++|++++.+|.+|.||||+|+..|+.++++.|+ ..+
T Consensus        84 ~i~~~Ll~~~~d~~~~d---~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~-~~~  159 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVN---QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILL-YYK  159 (223)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             chhHHHhccCceeEeeC---CCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhc-ccc
Confidence            78999999999999888   55667899999999877   889999999999999999999999999999999988 889


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      .+++.+|.+|+||||+|+.+|+.+++++|+++|++    ++.+|.+|+||||+|. .++.+++
T Consensus       160 ~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad----~~~~d~~g~tpl~~A~-~~~~~i~  217 (223)
T d1uoha_         160 ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQVAK-GGLGLIL  217 (223)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHCC-TTHHHHH
T ss_pred             ceeeeccCCCCceeccccccCcHHHHHHHHHCCCC----CCCCCCCCCCHHHHHH-CCCHHHH
Confidence            99999999999999999999999999999999999    9999999999999985 4555444

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.8e-23  Score=188.82  Aligned_cols=165  Identities=21%  Similarity=0.174  Sum_probs=127.0

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC-
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY-   77 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~-   77 (389)
                      +++++|+++|++++..+.....|.||||+|+..|+.+   .|+++|++++.+|.+|.||||+|+..|+.++++.|++.. 
T Consensus        23 ~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~  102 (255)
T d1oy3d_          23 PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRP  102 (255)
T ss_dssp             HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCC
T ss_pred             HHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHHHHHhhcc
Confidence            6889999998886655544466778899999888877   788899999999999999999999999999888876311 


Q ss_pred             ---------------------------------------------CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCC
Q 016470           78 ---------------------------------------------PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEV  112 (389)
Q Consensus        78 ---------------------------------------------~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~  112 (389)
                                                                   +.+++.+|.+|+||||+|+++++.+++++|++.++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~  182 (255)
T d1oy3d_         103 SHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA  182 (255)
T ss_dssp             SSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred             chhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhcccc
Confidence                                                         12235567788999999999999999999999887


Q ss_pred             ccccccc-ccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhhh
Q 016470          113 PMRRLVR-KIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       113 ~~~~l~~-~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                      +    .+ .++..|+||||+|++.++.++++.+      +          +   ....++.+|++|+||++++.+.+.
T Consensus       183 ~----~~~~~~~~g~TpL~~A~~~~~~~~v~~L------l----------~---~gadin~~d~~g~t~L~~A~~~~~  237 (255)
T d1oy3d_         183 D----LNKPEPTCGRTPLHLAVEAQAASVLELL------L----------K---AGADPTARMYGGRTPLGSALLRPN  237 (255)
T ss_dssp             C----TTCCCTTTCCCHHHHHHHTTCHHHHHHH------H----------H---TTCCTTCCCTTSCCHHHHHHTSSC
T ss_pred             c----ccccccccccccccccccccHHHHHHHH------H----------H---CCCCCCCCCCCCCCHHHHHHHCCC
Confidence            7    44 4567899999999988876655111      1          1   122367899999999999877653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=5.7e-23  Score=179.79  Aligned_cols=97  Identities=12%  Similarity=0.054  Sum_probs=88.9

Q ss_pred             hhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccc
Q 016470           41 DQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRK  120 (389)
Q Consensus        41 l~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~  120 (389)
                      .++|++++.+|..|.||||.|+..|..++++.++ ..+.+++.+|.+|+||||+|+.+|+.+++++|+++|++    ++.
T Consensus       110 ~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~-~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad----~n~  184 (209)
T d1ot8a_         110 ITADADINAADNSGKTALHWAAAVNNTEAVNILL-MHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFAN----REI  184 (209)
T ss_dssp             HHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTC
T ss_pred             hhhcccccccCCCCCCcchhhcccCcceeeeeec-cccccccccccccccccchhccccHHHHHHHHHHCCCC----CCC
Confidence            3367777788888999999999999999999999 77889999999999999999999999999999999999    999


Q ss_pred             cccccccccccccccCCCCccc
Q 016470          121 IDNGGNTLLHMTGIKRSDYVPE  142 (389)
Q Consensus       121 ~d~~G~TpLhlA~~~~~~~~~~  142 (389)
                      +|.+|+||||+|+++++.++++
T Consensus       185 ~d~~g~Tpl~~A~~~~~~~iv~  206 (209)
T d1ot8a_         185 TDHMDRLPRDVASERLHHDIVR  206 (209)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHh
Confidence            9999999999999999887763

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=6.2e-23  Score=165.99  Aligned_cols=114  Identities=10%  Similarity=0.080  Sum_probs=103.8

Q ss_pred             chhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCC-cHHHHHHHcCC
Q 016470           25 KPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGR-NILHVAIKYRQ  100 (389)
Q Consensus        25 ~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A~~~g~  100 (389)
                      .++||.|+..|+.+   .|+++|+|+|.+|.+|.||+|.|+ .|+.+++++|+ ++|++++.+|..|. ||||+|+++|+
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll-~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLL-LHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHH-TTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccccc
Confidence            35699999999988   889999999999999999999775 79999999999 88999999998876 69999999999


Q ss_pred             hhhHHHHHhcCCcccccccccccccccccccccccCCCCccccC
Q 016470          101 LEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM  144 (389)
Q Consensus       101 ~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l  144 (389)
                      .+++++|+++|++    ++.+|.+|+||||+|++.|+.++++.|
T Consensus        82 ~~~v~~Ll~~ga~----~~~~d~~G~T~l~~A~~~g~~~~v~~L  121 (125)
T d1bi7b_          82 LDTLVVLHRAGAR----LDVRDAWGRLPVDLAEELGHRDVARYL  121 (125)
T ss_dssp             HHHHHHHHHHTCC----SSCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccc----cccccCCCCCHHHHHHHcCCHHHHHHH
Confidence            9999999999999    999999999999999999988877544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.85  E-value=2.8e-22  Score=184.40  Aligned_cols=161  Identities=19%  Similarity=0.164  Sum_probs=134.7

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +|+|++|+++|+|+|..|   ..|.||||+|+..|+.+   +|+++|++.+..+..+.+|||.|+..|+.++++.|+ .+
T Consensus        53 ~~~v~~Ll~~Gadvn~~d---~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~-~~  128 (291)
T d1s70b_          53 TEEVLRLLERGADINYAN---VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI-SQ  128 (291)
T ss_dssp             HHHHHHHHHHCCCTTCBC---TTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHHCCCCCCccC---CCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhccc-cc
Confidence            378999999999999888   55677899999999987   899999999999999999999999999999999998 44


Q ss_pred             CCccc------------------------------------------------------------ccCCCCCcHHHHHHH
Q 016470           78 PQAVE------------------------------------------------------------HIDDEGRNILHVAIK   97 (389)
Q Consensus        78 ~~~~~------------------------------------------------------------~~d~~G~t~Lh~A~~   97 (389)
                      +...+                                                            ..+..|.||||.|+.
T Consensus       129 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~  208 (291)
T d1s70b_         129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAA  208 (291)
T ss_dssp             TCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHH
T ss_pred             CcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHH
Confidence            43332                                                            234567899999999


Q ss_pred             cCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCC
Q 016470           98 YRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMG  177 (389)
Q Consensus        98 ~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g  177 (389)
                      .|+.++++.|++.|++    +|.+|.+|+||||+|++.|+.++++.+.      +             ....++.+|++|
T Consensus       209 ~~~~~~~~~Ll~~g~d----in~~~~~g~TpL~~A~~~g~~~iv~lLl------~-------------~Gadv~~~d~~G  265 (291)
T d1s70b_         209 KGYTEVLKLLIQARYD----VNIKDYDGWTPLHAAAHWGKEEACRILV------E-------------NLCDMEAVNKVG  265 (291)
T ss_dssp             HTCHHHHHHHHTTTCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHH------H-------------TTCCTTCCCTTS
T ss_pred             cCChhhhcccccceec----ccccccCCCCHHHHHHHcCCHHHHHHHH------H-------------CCCCCCCcCCCC
Confidence            9999999999999999    9999999999999999999877762221      1             122357889999


Q ss_pred             CChHHHHHhhh
Q 016470          178 FTPEELFATAN  188 (389)
Q Consensus       178 ~tp~~l~~~~~  188 (389)
                      +||++++.+..
T Consensus       266 ~TaL~~A~e~~  276 (291)
T d1s70b_         266 QTAFDVADEDI  276 (291)
T ss_dssp             CCTTTSCCSGG
T ss_pred             CCHHHHHHHHH
Confidence            99999997643

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.4e-22  Score=166.31  Aligned_cols=132  Identities=14%  Similarity=0.191  Sum_probs=117.5

Q ss_pred             CHHHHHHHhC-CCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHH
Q 016470            1 MELARFLIRR-DTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         1 ~eiv~~Ll~~-ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      +|+|+.|+++ |+++|..|   ..+.||||.|+. ++.+   .|++++.+++.++..|.+|++.++..++.++++.++ +
T Consensus        15 ~~~vk~lL~~~~~~~n~~d---~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l-~   89 (156)
T d1bd8a_          15 VQEVRRLLHRELVHPDALN---RFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV-E   89 (156)
T ss_dssp             HHHHHHHHHTTCCCTTCCC---TTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-H
T ss_pred             HHHHHHHHHhCCCCCCccC---CCCCcccccccc-ccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            3788988875 78998888   566788998764 5555   788999999999999999999999999999999999 7


Q ss_pred             CCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccc
Q 016470           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE  142 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~  142 (389)
                      .+.+++.+|.+|+||||+|++.|+.+++++|+ .|++    ++.+|.+|+||||+|++.++.++++
T Consensus        90 ~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~----~~~~d~~G~TpL~~A~~~g~~~iv~  150 (156)
T d1bd8a_          90 HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESD----LHRRDARGLTPLELALQRGAQDLVD  150 (156)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSC----TTCCCTTSCCHHHHHHHSCCHHHHH
T ss_pred             cccccccccCCCCeeecccccccccccccccc-cccc----ccccCCCCCCHHHHHHHcCCHHHHH
Confidence            88899999999999999999999999999887 5788    8999999999999999999887763

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5e-22  Score=165.91  Aligned_cols=133  Identities=15%  Similarity=0.226  Sum_probs=121.3

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      +|+|+.|+++|+|+|.+|   ..|.||||.|+ .++.+   .|+++|++++.++..|.+|++.++..|+.+.++.++ .+
T Consensus        14 ~~~v~~Ll~~g~d~n~~d---~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~   88 (156)
T d1ihba_          14 LEQLTSLLQNNVNVNAQN---GFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EF   88 (156)
T ss_dssp             HHHHHHHTTSCCCTTCCC---TTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH-HT
T ss_pred             HHHHHHHHHCCCCcCccC---Ccccccccccc-cccccccccccccccccccccccCcccccccccccccccccccc-cc
Confidence            479999999999999988   66778899775 67776   889999999999999999999999999999999999 78


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      +.+++..|..|.+|+|+|+..++.+++++|+++++.   ..+.+|.+|.||||+|++.++.+++
T Consensus        89 ~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~---~~~~~d~~g~TpL~~A~~~~~~~iv  149 (156)
T d1ihba_          89 QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS---NVGHRNHKGDTACDLARLYGRNEVV  149 (156)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC---CTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccc---cccccCCCCCCHHHHHHHcCCHHHH
Confidence            889999999999999999999999999999999862   2899999999999999999987776

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=8.9e-22  Score=177.48  Aligned_cols=132  Identities=15%  Similarity=0.141  Sum_probs=112.7

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhh------------------------------------
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQ------------------------------------   42 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~------------------------------------   42 (389)
                      |++++|+++|++++..|   ..+.+|||.|+..++.+   .|++                                    
T Consensus        59 ~iv~~Ll~~ga~i~~~d---~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (255)
T d1oy3d_          59 STVEKLYAAGAGVLVAE---RGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPN  135 (255)
T ss_dssp             HHHHHHHHTTCCSSCCC---TTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------
T ss_pred             ccccccccccccccccc---cccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcc
Confidence            78999999999999988   55667899998877544   2221                                    


Q ss_pred             -----------cCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCccc-ccCCCCCcHHHHHHHcCChhhHHHHHhc
Q 016470           43 -----------KGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVE-HIDDEGRNILHVAIKYRQLEIFELVIQM  110 (389)
Q Consensus        43 -----------~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~-~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~  110 (389)
                                 .+.+++.+|.+|.||||+|++.|+.++++.|++ ++++.+ ..+..|+||||+|++.|+.+++++|+++
T Consensus       136 ~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~-~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~  214 (255)
T d1oy3d_         136 PENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA  214 (255)
T ss_dssp             --------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             hhHHHHHHhhhcCcccccccccCcccccccccccccccccchhc-ccccccccccccccccccccccccHHHHHHHHHHC
Confidence                       244456788999999999999999999999994 455555 4578899999999999999999999999


Q ss_pred             CCcccccccccccccccccccccccCCCCcc
Q 016470          111 EVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       111 ~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      |++    ++.+|.+|+||||+|+..++.+++
T Consensus       215 gad----in~~d~~g~t~L~~A~~~~~~~i~  241 (255)
T d1oy3d_         215 GAD----PTARMYGGRTPLGSALLRPNPILA  241 (255)
T ss_dssp             TCC----TTCCCTTSCCHHHHHHTSSCHHHH
T ss_pred             CCC----CCCCCCCCCCHHHHHHHCCCHHHH
Confidence            999    999999999999999999988777

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.6e-21  Score=158.75  Aligned_cols=112  Identities=16%  Similarity=0.115  Sum_probs=100.7

Q ss_pred             hhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChh
Q 016470           26 PKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~  102 (389)
                      +.||.|+..|+.+   .|+++|+|+|.+|.+|+||||+|+..|+.+++++|+ ++|++++.+|.+|+||||+|+.+|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll-~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-QFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccc-ccccccccccccCcccccccchhhHHH
Confidence            5689999999987   899999999999999999999999999999999999 678999999999999999999999999


Q ss_pred             hHHHHHhcCCccccccccccc-ccccccccc--cccCCCCccc
Q 016470          103 IFELVIQMEVPMRRLVRKIDN-GGNTLLHMT--GIKRSDYVPE  142 (389)
Q Consensus       103 iv~~Ll~~~~~~~~l~~~~d~-~G~TpLhlA--~~~~~~~~~~  142 (389)
                      ++++|+++|++    ++.+|. +|+||++++  .+.|+.++++
T Consensus        82 ~v~~Ll~~ga~----v~~~~~~~~~~~~~~~~a~~~g~~eiv~  120 (130)
T d1ycsb1          82 VCKFLVESGAA----VFAMTYSDMQTAADKCEEMEEGYTQCSQ  120 (130)
T ss_dssp             HHHHHHHTTCC----TTCCCSSSCCCHHHHCCSSSTTCCCHHH
T ss_pred             HHHHHHHcCCC----cccccCCCCCCHHHHHHHHHcChHHHHH
Confidence            99999999999    887764 588886655  5667777763

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=3.6e-21  Score=160.05  Aligned_cols=133  Identities=20%  Similarity=0.211  Sum_probs=118.8

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      .|+|++|+++|++++ .+   ..|.||||+|+..+..+   .+.+.....+..+..+.++++.++...+.+.++.++ .+
T Consensus        15 ~~~v~~LL~~ga~~~-~~---~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~   89 (153)
T d1awcb_          15 DDEVRILMANGAPFT-TD---WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KH   89 (153)
T ss_dssp             HHHHHHHHHHTCCCC-CC---TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH-TT
T ss_pred             HHHHHHHHHcCCCcc-cc---cCCCccccccccccccccccccccccccccccccccccccccccccccceeeeccc-cc
Confidence            379999999999877 34   45677899999988877   556666777777888999999999999999999998 88


Q ss_pred             CCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccc
Q 016470           78 PQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE  142 (389)
Q Consensus        78 ~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~  142 (389)
                      +.+.+.+|.+|+||||+|+..|+.+++++|+++|++    ++.+|.+|+||||+|+..|+.++++
T Consensus        90 ~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad----~~~~d~~g~Tpl~~A~~~g~~eiv~  150 (153)
T d1awcb_          90 GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD----VHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             CCccccccccCchHHHhhhhcchhheeeeccccccC----CcccCCCCCCHHHHHHHcCCHHHHH
Confidence            889999999999999999999999999999999999    9999999999999999999887764

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.82  E-value=5.5e-21  Score=173.92  Aligned_cols=131  Identities=13%  Similarity=0.144  Sum_probs=104.9

Q ss_pred             HHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCC---------------
Q 016470            5 RFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGC---------------   66 (389)
Q Consensus         5 ~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~---------------   66 (389)
                      +.++++|+|+|.+|   ..|.||||+|+..|+.+   .|+++|+|++.+|.+|.||+|.|...|+               
T Consensus        58 ~~~l~~Gadvn~~d---~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~  134 (277)
T d2fo1e1          58 KECIAAGADVNAMD---CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG  134 (277)
T ss_dssp             HHHHHTCCCTTCCC---TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHH
T ss_pred             hHHHHcCCCccccC---CCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccc
Confidence            44567788888777   55667788888777765   7778888887777777777777776553               


Q ss_pred             -----------------------------------------------------------------HHHHHHHHHHCCCcc
Q 016470           67 -----------------------------------------------------------------IEIVKEIFNVYPQAV   81 (389)
Q Consensus        67 -----------------------------------------------------------------~~~v~~Ll~~~~~~~   81 (389)
                                                                                       .+.++.++...+.+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~  214 (277)
T d2fo1e1         135 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK  214 (277)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             cccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccc
Confidence                                                                             344444444566677


Q ss_pred             cccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccc
Q 016470           82 EHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPE  142 (389)
Q Consensus        82 ~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~  142 (389)
                      +.+|..|+||||+|+++|+.+++++|+++|++    +|.+|.+|+||||+|++.++.++++
T Consensus       215 ~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad----in~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         215 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC----CCCcCCCCCCHHHHHHHcCCHHHHH
Confidence            77899999999999999999999999999999    9999999999999999999887773

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.1e-21  Score=171.97  Aligned_cols=160  Identities=18%  Similarity=0.189  Sum_probs=127.5

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.+.++|+++|.+|   ..|.||||+|+..|+.+   .|+++|+|++.+|.+|.||||.|+..|+.++++.+++ .+
T Consensus        20 ~li~~~~~~~~~in~~d---~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~-~~   95 (221)
T d1iknd_          20 EVIRQVKGDLAFLNFQN---NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ-SC   95 (221)
T ss_dssp             CCCC-----CCCCCCCC---TTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHH-ST
T ss_pred             HHHHHHHhCCCCcccCC---CCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhh-hc
Confidence            45677888999999888   56778899999999877   8899999999999999999999999999999999984 33


Q ss_pred             Cc------ccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccc-cccccccccccccCCCCccccCCCchhhh
Q 016470           79 QA------VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKID-NGGNTLLHMTGIKRSDYVPEKMEGPALVL  151 (389)
Q Consensus        79 ~~------~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d-~~G~TpLhlA~~~~~~~~~~~l~~~~~~l  151 (389)
                      ..      ......+|.||||.|+..++.+.++++++.|..    ++.++ .+|+||||+|++.++.++++.+.      
T Consensus        96 ~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~----~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll------  165 (221)
T d1iknd_          96 TTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD----VNAQEPCNGRTALHLAVDLQNPDLVSLLL------  165 (221)
T ss_dssp             TTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC----TTCCCTTTCCCHHHHHHHTTCHHHHHHHH------
T ss_pred             ccccccccccccccccchhhhHHhhcCChhheeeecccCcc----cccccccCCCCccccccccccHHHHHHHH------
Confidence            22      334456789999999999999999999999887    66654 67999999999999877662221      


Q ss_pred             hHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          152 QEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       152 ~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                                   ......+.+|.+|+||++++.+.+
T Consensus       166 -------------~~gad~~~~~~~G~tpl~~A~~~~  189 (221)
T d1iknd_         166 -------------KCGADVNRVTYQGYSPYQLTWGRP  189 (221)
T ss_dssp             -------------TTTCCSCCCCTTCCCGGGGCTTSS
T ss_pred             -------------hcCCcccccCCCCCCHHHHHHHCC
Confidence                         122336789999999999987654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.82  E-value=1.2e-21  Score=178.31  Aligned_cols=182  Identities=15%  Similarity=0.121  Sum_probs=126.9

Q ss_pred             HHHHHHhCCCCCccccccccCCchhhhhhhcCCCch-----------hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHH
Q 016470            3 LARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS-----------SVDQKGIGESSAIDNAETPLFLATKSGCIEIVK   71 (389)
Q Consensus         3 iv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~-----------~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~   71 (389)
                      +++.|.+.+++.  .+  .+.+.||||+|+..|+.+           .++++|+|+|.+|.+|+||||+|++.|+.++++
T Consensus        16 ~~~~l~~~~~n~--~~--~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~   91 (277)
T d2fo1e1          16 ITEPITRESVNI--ID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVA   91 (277)
T ss_dssp             CCSCCSTTTTTT--CC--CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhcCCCc--CC--CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccc
Confidence            455566666553  33  234678899999999876           246789999999999999999999999999999


Q ss_pred             HHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCc--------------------------------------
Q 016470           72 EIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVP--------------------------------------  113 (389)
Q Consensus        72 ~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~--------------------------------------  113 (389)
                      +|+ ++|++++.+|.+|+||+|.|+..++.++++++...+..                                      
T Consensus        92 ~Ll-~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (277)
T d2fo1e1          92 YLM-KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGA  170 (277)
T ss_dssp             HHH-HTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTC
T ss_pred             ccc-ccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccc
Confidence            999 78999999999999999999999998888777543210                                      


Q ss_pred             -----ccccccccccccccccccccccCCCCccccC--------------CCchhhhhHHhhHHHHHHhhc-cchhhhhc
Q 016470          114 -----MRRLVRKIDNGGNTLLHMTGIKRSDYVPEKM--------------EGPALVLQEELLWYERVEEVS-MPHFRNHR  173 (389)
Q Consensus       114 -----~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l--------------~~~~~~l~~~l~~~~~v~~~~-~~~~~~~~  173 (389)
                           .....+..+.+|.||||.++..++.+..+.+              ....++..-..+..+.++-+. ....++.+
T Consensus       171 ~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~  250 (277)
T d2fo1e1         171 KVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAV  250 (277)
T ss_dssp             CSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCC
T ss_pred             cccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCc
Confidence                 0011334556778888888766654433211              112222222222222232221 23346789


Q ss_pred             ccCCCChHHHHHhhhh
Q 016470          174 NNMGFTPEELFATANN  189 (389)
Q Consensus       174 n~~g~tp~~l~~~~~~  189 (389)
                      |++|.||++++.+.+.
T Consensus       251 d~~G~T~L~~A~~~~~  266 (277)
T d2fo1e1         251 DATDHTARQLAQANNH  266 (277)
T ss_dssp             CSSSCCHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHcCC
Confidence            9999999999987763

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=4.2e-20  Score=163.59  Aligned_cols=130  Identities=17%  Similarity=0.186  Sum_probs=109.2

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch--------------------------------------hhhhc
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS--------------------------------------SVDQK   43 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~--------------------------------------~Ll~~   43 (389)
                      |++++|+++|++++..+..+..+.+++|.+...+..+                                      .|++.
T Consensus        48 ~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  127 (229)
T d1ixva_          48 EITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN  127 (229)
T ss_dssp             HHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccchhhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence            6888999999888876665566667777555443221                                      46678


Q ss_pred             CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHh-cCCcccccccccc
Q 016470           44 GIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ-MEVPMRRLVRKID  122 (389)
Q Consensus        44 ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~l~~~~d  122 (389)
                      |.+.+.+|.+|+||||+|+..|+.++++.|++..+.+++.+|.+|+||||+|+.+|+.+++++|++ .|++    ++.+|
T Consensus       128 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad----~~~~d  203 (229)
T d1ixva_         128 GASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVD  203 (229)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC----SCCCC
T ss_pred             cccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCC----CCCcC
Confidence            888888999999999999999999999999966667899999999999999999999999999996 5888    99999


Q ss_pred             ccccccccccccc
Q 016470          123 NGGNTLLHMTGIK  135 (389)
Q Consensus       123 ~~G~TpLhlA~~~  135 (389)
                      .+|+||||+|+..
T Consensus       204 ~~g~t~l~~A~~~  216 (229)
T d1ixva_         204 NKGAKAEDVALNE  216 (229)
T ss_dssp             TTSCCTGGGCSCH
T ss_pred             CCCCCHHHHHhhH
Confidence            9999999999853

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=9.2e-21  Score=158.66  Aligned_cols=138  Identities=16%  Similarity=0.157  Sum_probs=118.4

Q ss_pred             chhhhhhhcCCCch---hhh-hcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCC
Q 016470           25 KPKIHRYGANPNAS---SVD-QKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        25 ~~~Lh~a~~~~~~~---~Ll-~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  100 (389)
                      .+ ||.|+..|+.+   .|+ +.|+++|.+|..|+||||+|+ .|+.+++++|+ ..+.+++..+.+|.+|++.++..++
T Consensus         4 ~~-L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll-~~~~~~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DR-LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELL-KQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HH-HHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HH-HHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccc-ccccccccccccccccccccccccc
Confidence            44 99999999988   445 468999999999999999986 58899999999 7788999999999999999999999


Q ss_pred             hhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCCh
Q 016470          101 LEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTP  180 (389)
Q Consensus       101 ~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp  180 (389)
                      .++++.++++|++    +|.+|.+|+||||+|++.++.++++.+.                    .....+.+|.+|+||
T Consensus        81 ~~~~~~~l~~~~~----~n~~~~~~~t~L~~A~~~~~~~i~~~L~--------------------~~~~~~~~d~~G~Tp  136 (156)
T d1bd8a_          81 LDTLKVLVEHGAD----VNVPDGTGALPIHLAVQEGHTAVVSFLA--------------------AESDLHRRDARGLTP  136 (156)
T ss_dssp             HHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHHTCHHHHHHHH--------------------TTSCTTCCCTTSCCH
T ss_pred             ccccccccccccc----cccccCCCCeeecccccccccccccccc--------------------ccccccccCCCCCCH
Confidence            9999999999998    9999999999999999998876652211                    112357889999999


Q ss_pred             HHHHHhhhh
Q 016470          181 EELFATANN  189 (389)
Q Consensus       181 ~~l~~~~~~  189 (389)
                      ++++.+.+.
T Consensus       137 L~~A~~~g~  145 (156)
T d1bd8a_         137 LELALQRGA  145 (156)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHHcCC
Confidence            999987654

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.4e-20  Score=157.51  Aligned_cols=109  Identities=16%  Similarity=0.218  Sum_probs=89.5

Q ss_pred             hhhhhcCCCch---hhhhcCCCCCCC------cCCCCCHHHHHHHc---CCHHHHHHHHHHCCCcccccCCCCCcHHHHH
Q 016470           28 IHRYGANPNAS---SVDQKGIGESSA------IDNAETPLFLATKS---GCIEIVKEIFNVYPQAVEHIDDEGRNILHVA   95 (389)
Q Consensus        28 Lh~a~~~~~~~---~Ll~~ga~~n~~------d~~G~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A   95 (389)
                      |+.|...+++.   .++..|.|++.+      +..|+||||+|++.   |+.+++++|+ ++|++++.+|.+|+||||+|
T Consensus        10 L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1          10 LCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV-QNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH-HHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHH-HcCCChhhhhhhhccccccc
Confidence            44667777766   445677776554      66789999999874   6788999888 66888999999999999999


Q ss_pred             HHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           96 IKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        96 ~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      +..|+.+++++|+++|++    ++.+|.+|+||||+|++.++.+++
T Consensus        89 ~~~~~~~~v~~Ll~~gad----~~~~d~~g~tpL~~A~~~~~~~i~  130 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKAS----IEIANESGETPLDIAKRLKHEHCE  130 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             cccccccccccccccCcc----ccccCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999988    888999999999999988877766

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7.9e-20  Score=147.44  Aligned_cols=104  Identities=13%  Similarity=0.118  Sum_probs=93.2

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCC-CHHHHHHHcCCHHHHHHHHHH
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAE-TPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~-tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      +|++++|+++|+++|..+   ..+.+++|.+ ..|+.+   .|+++|+++|.+|..|. ||||+|++.|+.+++++|+ +
T Consensus        16 ~~~v~~Ll~~gad~n~~~---~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll-~   90 (125)
T d1bi7b_          16 VEEVRALLEAGANPNAPN---SYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH-R   90 (125)
T ss_dssp             HHHHHHHHTTTCCTTCCC---SSSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH-H
T ss_pred             HHHHHHHHHcCCcccccc---cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence            379999999999999888   5566779855 467766   89999999999998876 6999999999999999999 6


Q ss_pred             CCCcccccCCCCCcHHHHHHHcCChhhHHHHHh
Q 016470           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQ  109 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~  109 (389)
                      +|++++.+|.+|+||||+|+++|+.+++++|+.
T Consensus        91 ~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          91 AGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            689999999999999999999999999999874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.1e-20  Score=178.14  Aligned_cols=132  Identities=17%  Similarity=0.236  Sum_probs=121.9

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      ++++.+++.+.+.+..+   ..+.+|+|.++..++.+   .|+++|++++..+..+.||||.|+..++.++++.++ ..|
T Consensus       245 ~~~~~~~~~~~~~~~~~---~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll-~~g  320 (408)
T d1n11a_         245 EMVALLLSKQANGNLGN---KSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL-QHQ  320 (408)
T ss_dssp             HHHHHHHTTTCCTTCCC---TTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHH-HTT
T ss_pred             hHhhhhhcccccccccc---CCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeec-ccc
Confidence            57888888888888776   45567799999998877   889999999999999999999999999999999999 789


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      ++++.+|.+|+||||+|+++|+.+++++|+++|++    +|.+|.+|+||||+|++.|+.+++
T Consensus       321 ~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd----~n~~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         321 ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS----PNEVSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCSSSCCHHHHHHHTTCHHHH
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999    999999999999999999987766

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.8e-20  Score=153.65  Aligned_cols=139  Identities=20%  Similarity=0.207  Sum_probs=120.5

Q ss_pred             hhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChh
Q 016470           26 PKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~  102 (389)
                      ++||.|+..|+.+   .|+++|+|+|.+|.+|.||||+|+ .|+.+++++|+ .++++++.++.+|.++++.++.+++.+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll-~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-LRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-ccccccccccc-ccccccccccccCcccccccccccccc
Confidence            4699999999988   899999999999999999999886 79999999999 788999999999999999999999999


Q ss_pred             hHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHH
Q 016470          103 IFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEE  182 (389)
Q Consensus       103 iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~  182 (389)
                      .++.+++.+.+    ++..|..|.+|+|+|+..++.++++.                 +.+. .+...+.+|++|+||++
T Consensus        81 ~~~~l~~~~~~----~~~~~~~~~~~l~~a~~~~~~~~~~~-----------------Ll~~-~~~~~~~~d~~g~TpL~  138 (156)
T d1ihba_          81 TLQTLLEFQAD----VNIEDNEGNLPLHLAAKEGHLRVVEF-----------------LVKH-TASNVGHRNHKGDTACD  138 (156)
T ss_dssp             HHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHH-----------------HHHH-SCCCTTCCCTTSCCHHH
T ss_pred             ccccccccccc----cccccccccccccccccccccccccc-----------------cccc-ccccccccCCCCCCHHH
Confidence            99999999988    89999999999999999887655411                 1111 12235788999999999


Q ss_pred             HHHhhh
Q 016470          183 LFATAN  188 (389)
Q Consensus       183 l~~~~~  188 (389)
                      ++.+.+
T Consensus       139 ~A~~~~  144 (156)
T d1ihba_         139 LARLYG  144 (156)
T ss_dssp             HHHHTT
T ss_pred             HHHHcC
Confidence            988764

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=1.4e-19  Score=168.07  Aligned_cols=117  Identities=14%  Similarity=0.184  Sum_probs=92.5

Q ss_pred             CCCCCccc-cccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCH-------HHHHHH-----
Q 016470           10 RDTSWEIT-DSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCI-------EIVKEI-----   73 (389)
Q Consensus        10 ~ga~vn~~-~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~-------~~v~~L-----   73 (389)
                      .+.++|.. |   +.|.||||+|+..|+.+   .|+++|+|++.+|..|+||||.|+..|+.       ++++++     
T Consensus        95 ~~~dvn~~~D---~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~  171 (301)
T d1sw6a_          95 TQLNLNIPVD---EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  171 (301)
T ss_dssp             SCCCSCSCCS---TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             cCCCcCcCcC---CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhh
Confidence            46666654 4   45667899999999877   78899999999999999999999976541       222221     


Q ss_pred             -------------------------------------HHHCCC------------------------------------c
Q 016470           74 -------------------------------------FNVYPQ------------------------------------A   80 (389)
Q Consensus        74 -------------------------------------l~~~~~------------------------------------~   80 (389)
                                                           ++....                                    .
T Consensus       172 ~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (301)
T d1sw6a_         172 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM  251 (301)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHT
T ss_pred             hcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC
Confidence                                                 111100                                    1


Q ss_pred             ccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccccccccccc
Q 016470           81 VEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTG  133 (389)
Q Consensus        81 ~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~  133 (389)
                      +|.+|.+|+||||+|+++|+.+++++|+++|++    ++.+|++|.||||+|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd----~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD----PFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC----TTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHcC
Confidence            577899999999999999999999999999999    9999999999999996

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=9.2e-21  Score=151.45  Aligned_cols=107  Identities=21%  Similarity=0.182  Sum_probs=94.6

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccc
Q 016470           55 ETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGI  134 (389)
Q Consensus        55 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~  134 (389)
                      .|||++|+++|+.++++.|+ +.|++++.+|.+|+||||+|+.+|+.+++++++++|++    +|.+|.+|+||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll-~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d----in~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD----INAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHH-TTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT----TTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHH-Hhhhccccccccccccccccccccccccccccccccce----eeecccccccchhhhhh
Confidence            47999999999999999999 78999999999999999999999999999999999999    99999999999999999


Q ss_pred             cCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHH
Q 016470          135 KRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFA  185 (389)
Q Consensus       135 ~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~  185 (389)
                      .++.++++.+..                   ....++.+|++|+||++++.
T Consensus        78 ~~~~~~v~~Ll~-------------------~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          78 EGHVSCVKLLLS-------------------KGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTCCHHHHHHHT-------------------TCCCSSSSSSSTCCCCCTCS
T ss_pred             cCchhhhhhhhc-------------------ccccceeeCCCCCCHHHHHh
Confidence            998877632211                   12236788999999999874

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.3e-19  Score=160.42  Aligned_cols=160  Identities=17%  Similarity=0.099  Sum_probs=120.9

Q ss_pred             HHHHHHHh-CCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCC---CcCCCCCHHHHHHHcC---------
Q 016470            2 ELARFLIR-RDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESS---AIDNAETPLFLATKSG---------   65 (389)
Q Consensus         2 eiv~~Ll~-~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~---~d~~G~tpLh~Aa~~g---------   65 (389)
                      ++++.|++ ++.+++.+|   ..|.||||+|+..|..+   .|+++|++++.   .|..|.+|+|+++..+         
T Consensus        14 ~~v~~Ll~~~~~~~~~~d---~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (229)
T d1ixva_          14 FKVQELLHSKPSLLLQKD---QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY   90 (229)
T ss_dssp             HHHHHHHHHCGGGTTCCC---TTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccC---CCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccccccc
Confidence            67777776 457777777   56778899999999876   88999998853   4556777777776654         


Q ss_pred             --------------------------CHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccc
Q 016470           66 --------------------------CIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVR  119 (389)
Q Consensus        66 --------------------------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~  119 (389)
                                                +.++++.|+ ..+...+.+|.+|+||||+|+.+|+.+++++|++.+..   .++
T Consensus        91 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~---~in  166 (229)
T d1ixva_          91 DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI-ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKS---AVN  166 (229)
T ss_dssp             SSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCC---CSC
T ss_pred             cccccccccccccccccccccccccchhhhhhhhh-hhcccccccCCCCCCccchhhhcccccccccccccccc---ccc
Confidence                                      445555555 55666777888999999999999999999999988632   278


Q ss_pred             ccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHh
Q 016470          120 KIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFAT  186 (389)
Q Consensus       120 ~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~  186 (389)
                      .+|.+|+||||+|+..++.++++.+      +          ++  .+..++.+|++|+||++++.+
T Consensus       167 ~~d~~g~TpLh~A~~~~~~~~v~~L------l----------~~--~gad~~~~d~~g~t~l~~A~~  215 (229)
T d1ixva_         167 WQDKQGWTPLFHALAEGHGDAAVLL------V----------EK--YGAEYDLVDNKGAKAEDVALN  215 (229)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHH------H----------HH--HCCCSCCCCTTSCCTGGGCSC
T ss_pred             ccccccCCchhhhcccccHHHHHHH------H----------Hh--cCCCCCCcCCCCCCHHHHHhh
Confidence            9999999999999998877665211      1          00  122367899999999999864

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=5.7e-20  Score=160.06  Aligned_cols=154  Identities=14%  Similarity=0.091  Sum_probs=94.5

Q ss_pred             hCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC-------
Q 016470            9 RRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP-------   78 (389)
Q Consensus         9 ~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~-------   78 (389)
                      ++|+++|..|   ..|.||||+|+..|+.+   .|+++|++.+..+..|.++++.|...++.++++.......       
T Consensus        28 ~~g~~in~~d---~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  104 (228)
T d1k1aa_          28 QGGRELDIYN---NLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE  104 (228)
T ss_dssp             HTTCCSCCCC---TTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTT
T ss_pred             HCCCCCCccC---CCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhcccccccccc
Confidence            3555555554   33344555555555544   4555555555555555555555555555544444432110       


Q ss_pred             ------------------------------CcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccc
Q 016470           79 ------------------------------QAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        79 ------------------------------~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~Tp  128 (389)
                                                    ......+..|.+++|.|+..+..++.+.++++|.+    .+.+|.+|+||
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~----~~~~d~~g~t~  180 (228)
T d1k1aa_         105 ARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN----VNAQMYSGSSA  180 (228)
T ss_dssp             CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBH
T ss_pred             ccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc----cccccccCcch
Confidence                                          00111233566788888888888888888888777    78888899999


Q ss_pred             cccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       129 LhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                      ||+|+..++.++++.|.                 +  .+..++.+|.+|.||++++.+++
T Consensus       181 L~~A~~~g~~~~v~~Ll-----------------~--~Gad~n~~d~~G~TpL~~A~~~~  221 (228)
T d1k1aa_         181 LHSASGRGLLPLVRTLV-----------------R--SGADSSLKNCHNDTPLMVARSRR  221 (228)
T ss_dssp             HHHHHHHTCHHHHHHHH-----------------H--TTCCTTCCCTTSCCTTTTCSSHH
T ss_pred             HHHHHHcCCHHHHHHHH-----------------H--CCCCCCCCCCCCCCHHHHHHhCC
Confidence            99999888766552111                 1  12236788999999999987654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=3.8e-19  Score=157.13  Aligned_cols=132  Identities=20%  Similarity=0.239  Sum_probs=113.2

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCC------CCCcCCCCCHHHHHHHcCCHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGE------SSAIDNAETPLFLATKSGCIEIVKE   72 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~------n~~d~~G~tpLh~Aa~~g~~~~v~~   72 (389)
                      +++++|+++|++++..|   ..+.+|||.++..+..+   .+++.+.+.      +.....|.||||.|+..|+.+.++.
T Consensus        53 ~iv~~L~~~g~d~~~~d---~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~  129 (221)
T d1iknd_          53 EIAEALLGAGCDPELRD---FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVEL  129 (221)
T ss_dssp             HHHHCCCSCCCCSCCCC---TTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ccccccccccccccccc---cccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheee
Confidence            68999999999999888   55667899999888766   667766554      3345568999999999999999999


Q ss_pred             HHHHCCCccccc-CCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCcc
Q 016470           73 IFNVYPQAVEHI-DDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus        73 Ll~~~~~~~~~~-d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      ++ ..+..++.. +.+|+||||+|++.|+.+++++|+++|++    ++.+|.+|+||||+|++.++.+++
T Consensus       130 l~-~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad----~~~~~~~G~tpl~~A~~~~~~~~~  194 (221)
T d1iknd_         130 LV-SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQ  194 (221)
T ss_dssp             HH-HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred             ec-ccCcccccccccCCCCccccccccccHHHHHHHHhcCCc----ccccCCCCCCHHHHHHHCCCHHHH
Confidence            99 556666665 46799999999999999999999999999    999999999999999998877665

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=6.3e-19  Score=147.36  Aligned_cols=110  Identities=12%  Similarity=0.033  Sum_probs=93.5

Q ss_pred             HHHHHHhCCCCCccccc---cccCCchhhhhhhcC---CCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHH
Q 016470            3 LARFLIRRDTSWEITDS---IQDQSKPKIHRYGAN---PNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEI   73 (389)
Q Consensus         3 iv~~Ll~~ga~vn~~~~---~~~~~~~~Lh~a~~~---~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~L   73 (389)
                      .+..++..|+|++....   ....|.||||+|+..   +..+   +|+++|+|+|.+|.+|+||||+|++.|+.+++++|
T Consensus        21 ~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~L  100 (154)
T d1dcqa1          21 GLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL  100 (154)
T ss_dssp             HHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccc
Confidence            45667788888665421   124567889998864   4433   79999999999999999999999999999999999


Q ss_pred             HHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           74 FNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        74 l~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                      + ++|++++.+|.+|+||||+|+++|+.+++++|++.+..
T Consensus       101 l-~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         101 L-RGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             H-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             c-ccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9 78999999999999999999999999999999987654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2e-19  Score=149.36  Aligned_cols=139  Identities=16%  Similarity=0.091  Sum_probs=119.7

Q ss_pred             hhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChh
Q 016470           26 PKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLE  102 (389)
Q Consensus        26 ~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~  102 (389)
                      +|||.|+..|+.+   .|+++|++++ .|..|+||||+|+..++.++++.++ ..+...+..+..+.+++|.++...+.+
T Consensus         4 t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           4 KKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccc-cccccccccccccccccccccccccce
Confidence            5699999999988   8999999987 6999999999999999999999998 666677778889999999999999999


Q ss_pred             hHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHH
Q 016470          103 IFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEE  182 (389)
Q Consensus       103 iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~  182 (389)
                      +++++.+++++    .+.+|.+|+||||+|+..++.++++.+                 .+  ....++.+|++|.||++
T Consensus        82 ~~~~l~~~~~~----~~~~~~~g~T~L~~A~~~g~~~iv~~l-----------------l~--~gad~~~~d~~g~Tpl~  138 (153)
T d1awcb_          82 IVEVLLKHGAD----VNAKDMLKMTALHWATEHNHQEVVELL-----------------IK--YGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             HHHHHHTTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHH-----------------HH--TTCCTTCCCTTSCCHHH
T ss_pred             eeecccccCCc----cccccccCchHHHhhhhcchhheeeec-----------------cc--cccCCcccCCCCCCHHH
Confidence            99999999998    899999999999999999987666211                 11  12235788999999999


Q ss_pred             HHHhhhh
Q 016470          183 LFATANN  189 (389)
Q Consensus       183 l~~~~~~  189 (389)
                      ++.+.+.
T Consensus       139 ~A~~~g~  145 (153)
T d1awcb_         139 ISIDNGN  145 (153)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            9987654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=1.2e-18  Score=159.71  Aligned_cols=82  Identities=18%  Similarity=0.261  Sum_probs=77.3

Q ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccccccc
Q 016470           48 SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNT  127 (389)
Q Consensus        48 n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~T  127 (389)
                      ...+.+|.||||.|+..|+.++++.|+ ..|++++.+|.+|+||||+|++.|+.+++++|+++|++    ++.+|.+|+|
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll-~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gad----v~~~d~~G~T  267 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLI-QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCD----MEAVNKVGQT  267 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHH-TTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCC
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccc-cceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCC
Confidence            345677899999999999999999999 88999999999999999999999999999999999999    9999999999


Q ss_pred             ccccccc
Q 016470          128 LLHMTGI  134 (389)
Q Consensus       128 pLhlA~~  134 (389)
                      |||+|++
T Consensus       268 aL~~A~e  274 (291)
T d1s70b_         268 AFDVADE  274 (291)
T ss_dssp             TTTSCCS
T ss_pred             HHHHHHH
Confidence            9999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.8e-19  Score=152.34  Aligned_cols=132  Identities=15%  Similarity=0.168  Sum_probs=106.8

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch----------------------------------------hhh
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS----------------------------------------SVD   41 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~----------------------------------------~Ll   41 (389)
                      |++++|+++|++++...   ..+.++++.+...+..+                                        .+.
T Consensus        54 ~iv~~Ll~~ga~~~~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~  130 (228)
T d1k1aa_          54 SVVRLLVTAGASPMALD---RHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL  130 (228)
T ss_dssp             HHHHHHHHTTCCTTCCC---TTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             ccccccccccccccccc---cccccccccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhh
Confidence            78999999999988776   33445566554443322                                        222


Q ss_pred             hcCCCC-CCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccc
Q 016470           42 QKGIGE-SSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRK  120 (389)
Q Consensus        42 ~~ga~~-n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~  120 (389)
                      ....+. ...+..|.+|+|.|+..+..++++.++ ..+...+.+|.+|+||||+|+.+|+.+++++|+++|++    +|.
T Consensus       131 ~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~-~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad----~n~  205 (228)
T d1k1aa_         131 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD----SSL  205 (228)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTC
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhhh-hhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCC----CCC
Confidence            233333 334567999999999999999999999 78899999999999999999999999999999999999    999


Q ss_pred             cccccccccccccccCCCCcc
Q 016470          121 IDNGGNTLLHMTGIKRSDYVP  141 (389)
Q Consensus       121 ~d~~G~TpLhlA~~~~~~~~~  141 (389)
                      +|.+|+||||+|+++++.+++
T Consensus       206 ~d~~G~TpL~~A~~~~~~div  226 (228)
T d1k1aa_         206 KNCHNDTPLMVARSRRVIDIL  226 (228)
T ss_dssp             CCTTSCCTTTTCSSHHHHHHH
T ss_pred             CCCCCCCHHHHHHhCCCcccc
Confidence            999999999999988765443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.6e-19  Score=143.37  Aligned_cols=107  Identities=13%  Similarity=0.132  Sum_probs=95.5

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHC
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVY   77 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~   77 (389)
                      .|+|+.|+++|+|+|.+|   +.|.||||+|+..++.+   .|+++|+++|.+|.+|+||||+|+..|+.+++++|+ ++
T Consensus        14 ~~~v~~Ll~~g~d~n~~d---~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll-~~   89 (130)
T d1ycsb1          14 FDLVQRIIYEVDDPSLPN---DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV-ES   89 (130)
T ss_dssp             HHHHHHHTSTTSSCCCCC---TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HT
T ss_pred             HHHHHHHHHcCCCccccc---cccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHH-Hc
Confidence            378999999999999988   56778899999999877   889999999999999999999999999999999999 78


Q ss_pred             CCcccccCC-CCCcHHHHH--HHcCChhhHHHHHhcC
Q 016470           78 PQAVEHIDD-EGRNILHVA--IKYRQLEIFELVIQME  111 (389)
Q Consensus        78 ~~~~~~~d~-~G~t~Lh~A--~~~g~~~iv~~Ll~~~  111 (389)
                      |++++.++. +|+|+++++  +++|+.+++++|+..+
T Consensus        90 ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          90 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             CCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999998774 588887765  5778999999998753

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=9.9e-19  Score=167.52  Aligned_cols=164  Identities=17%  Similarity=0.180  Sum_probs=128.5

Q ss_pred             HHHHHHHhCCCCCccccccc------------------------------cCCchhhhhhhcCCCch---hhhhcCCCCC
Q 016470            2 ELARFLIRRDTSWEITDSIQ------------------------------DQSKPKIHRYGANPNAS---SVDQKGIGES   48 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~------------------------------~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n   48 (389)
                      +++++|+++|++++..+..+                              ..+.+|+|.|+..+..+   .+.+.+.+.+
T Consensus       179 ~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~  258 (408)
T d1n11a_         179 DIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN  258 (408)
T ss_dssp             HHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT
T ss_pred             HHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhccccccc
Confidence            67889999998887655211                              11223344444444433   5556677788


Q ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCcccccccccccccccc
Q 016470           49 SAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTL  128 (389)
Q Consensus        49 ~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~Tp  128 (389)
                      ..|..|.||+|.|++.++.+++++|+ +.|++++..+..+.||||.++..++.++++++++.|++    +|.+|.+|+||
T Consensus       259 ~~~~~g~~~l~~a~~~~~~~i~~~Ll-~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~----in~~d~~G~T~  333 (408)
T d1n11a_         259 LGNKSGLTPLHLVAQEGHVPVADVLI-KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD----VNAKTKLGYSP  333 (408)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHH-HHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC----TTCCCTTSCCH
T ss_pred             cccCCCCChhhhhhhcCcHHHHHHHH-HCCCccccccccccccchhhcccCcceeeeeecccccc----ccccCCCCCCH
Confidence            88889999999999999999999999 67889999999999999999999999999999999998    99999999999


Q ss_pred             cccccccCCCCccccCCCchhhhhHHhhHHHHHHhhccchhhhhcccCCCChHHHHHhhhh
Q 016470          129 LHMTGIKRSDYVPEKMEGPALVLQEELLWYERVEEVSMPHFRNHRNNMGFTPEELFATANN  189 (389)
Q Consensus       129 LhlA~~~~~~~~~~~l~~~~~~l~~~l~~~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~~  189 (389)
                      ||+|++.|+.++++.+.                 +  .+..++.+|++|+||++++.+.+.
T Consensus       334 Lh~A~~~g~~~iv~~Ll-----------------~--~GAd~n~~d~~G~t~L~~A~~~~~  375 (408)
T d1n11a_         334 LHQAAQQGHTDIVTLLL-----------------K--NGASPNEVSSDGTTPLAIAKRLGY  375 (408)
T ss_dssp             HHHHHHTTCHHHHHHHH-----------------H--TTCCSCCCCSSSCCHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHH-----------------H--CCCCCCCCCCCCCCHHHHHHHcCC
Confidence            99999998877662221                 1  122367899999999999988753

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4.1e-18  Score=155.21  Aligned_cols=118  Identities=15%  Similarity=0.230  Sum_probs=96.3

Q ss_pred             HHHHHHHhC-CCCCccccccccCCchhhhhhhcCCCch----hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHH
Q 016470            2 ELARFLIRR-DTSWEITDSIQDQSKPKIHRYGANPNAS----SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 eiv~~Ll~~-ga~vn~~~~~~~~~~~~Lh~a~~~~~~~----~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      +++++|+++ |++++..+..+.........++..+..+    .|+++|++++.+|.+|.||||.|++.|+.+++++|++.
T Consensus       162 ~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~  241 (285)
T d1wdya_         162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ  241 (285)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS
T ss_pred             HHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHc
Confidence            678888864 7898887733222222222344444433    68899999999999999999999999999999999977


Q ss_pred             CCCcccccCCCCCcHHHHHHHcCChhhHHHHHhcCCccccccccccc
Q 016470           77 YPQAVEHIDDEGRNILHVAIKYRQLEIFELVIQMEVPMRRLVRKIDN  123 (389)
Q Consensus        77 ~~~~~~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~  123 (389)
                      +|++++.+|.+|+||||+|+++|+.+++++|+++|++    +|.+|.
T Consensus       242 ~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd----~n~~d~  284 (285)
T d1wdya_         242 EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TDCGDL  284 (285)
T ss_dssp             SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC----SCCSSC
T ss_pred             CCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCcccC
Confidence            8999999999999999999999999999999999999    888873

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=4e-18  Score=155.31  Aligned_cols=164  Identities=18%  Similarity=0.177  Sum_probs=113.7

Q ss_pred             CHHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCC------------------------------
Q 016470            1 MELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGE------------------------------   47 (389)
Q Consensus         1 ~eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~------------------------------   47 (389)
                      +|+|++|+++|+++|.++  ...+.||||+|+..|+.+   .|++.|.+.                              
T Consensus        18 ~e~vk~Ll~~G~din~~~--~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (285)
T d1wdya_          18 VDLVQQLLEGGANVNFQE--EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG   95 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCC--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCCcCccC--CCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccchhhhhc
Confidence            479999999999998776  346778899999988755   333322221                              


Q ss_pred             ------------------------------------C----------CCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcc
Q 016470           48 ------------------------------------S----------SAIDNAETPLFLATKSGCIEIVKEIFNVYPQAV   81 (389)
Q Consensus        48 ------------------------------------n----------~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~   81 (389)
                                                          +          ..+..|.||||+|+++|+.+++++|++..|+++
T Consensus        96 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i  175 (285)
T d1wdya_          96 ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV  175 (285)
T ss_dssp             CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT
T ss_pred             ccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCc
Confidence                                                1          112346777777777777777777776667777


Q ss_pred             cccCCCCCcHHHHHHHcCC----hhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCCchhhhhHHhhH
Q 016470           82 EHIDDEGRNILHVAIKYRQ----LEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEGPALVLQEELLW  157 (389)
Q Consensus        82 ~~~d~~G~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~l~~~l~~  157 (389)
                      +..|..|.++.+.+...+.    .+++++|+++|++    ++.+|.+|+||||.|++.++.++++.+             
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~----~n~~~~~g~t~L~~a~~~~~~~~v~~l-------------  238 (285)
T d1wdya_         176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD----VNVRGERGKTPLILAVEKKHLGLVQRL-------------  238 (285)
T ss_dssp             TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC----SSCCCTTSCCHHHHHHHTTCHHHHHHH-------------
T ss_pred             ccccCCCCcccccccccccchHHHHHHHHHHHCCCC----CCccCCCCCCccchhhhcCcHHHHHHH-------------
Confidence            7777777776666554432    3567777777777    788889999999999988775544111             


Q ss_pred             HHHHHhhccchhhhhcccCCCChHHHHHhhh
Q 016470          158 YERVEEVSMPHFRNHRNNMGFTPEELFATAN  188 (389)
Q Consensus       158 ~~~v~~~~~~~~~~~~n~~g~tp~~l~~~~~  188 (389)
                          .. ..+..++.+|.+|.||++++.+.+
T Consensus       239 ----L~-~~g~din~~d~~G~TpL~~A~~~~  264 (285)
T d1wdya_         239 ----LE-QEHIEINDTDSDGKTALLLAVELK  264 (285)
T ss_dssp             ----HH-SSSCCTTCCCTTSCCHHHHHHHTT
T ss_pred             ----HH-cCCCCCcCCCCCCCCHHHHHHHcC
Confidence                00 123346789999999999998775

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.72  E-value=6.2e-20  Score=173.91  Aligned_cols=123  Identities=7%  Similarity=-0.036  Sum_probs=102.0

Q ss_pred             cCCchhhhhhhcCCCch------hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccC--CCCCcHHH
Q 016470           22 DQSKPKIHRYGANPNAS------SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHID--DEGRNILH   93 (389)
Q Consensus        22 ~~~~~~Lh~a~~~~~~~------~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--~~G~t~Lh   93 (389)
                      ..+.|+||.|+..|+.+      .|+++|+++|.+|.+|+||||+||++|+.++|++|+ +.|++++..|  .+|+||||
T Consensus        88 ~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll-~~g~~~~~~~~~~~g~t~L~  166 (346)
T d2ajaa1          88 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLC-ELAPTEIMAMIQAENYHAFR  166 (346)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHH-HSCTTTHHHHHSHHHHHHHH
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHH-HcCCCccccccccCCCChhH
Confidence            45678899999999864      488999999999999999999999999999999999 7788888765  46999999


Q ss_pred             HHHHcCChhhHHHHHhcCCcccccccccccccccccccccccCCCCccccCCC
Q 016470           94 VAIKYRQLEIFELVIQMEVPMRRLVRKIDNGGNTLLHMTGIKRSDYVPEKMEG  146 (389)
Q Consensus        94 ~A~~~g~~~iv~~Ll~~~~~~~~l~~~~d~~G~TpLhlA~~~~~~~~~~~l~~  146 (389)
                      +|+++||.+++++|++.|++ ....+.++.+|.||+|.|+.+|+.++++.+..
T Consensus       167 ~Aa~~g~~~iv~~Ll~~~~~-~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~  218 (346)
T d2ajaa1         167 LAAENGHLHVLNRLCELAPT-EATAMIQAENYYAFRWAAVGRGHHNVINFLLD  218 (346)
T ss_dssp             HHHHTTCHHHHHHHHHSCGG-GHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT
T ss_pred             HHHHHhhHHHHHHHHHcCCc-ccccccccCCCcchhhHHhhcCHHHHHHHHHh
Confidence            99999999999999999875 22245566778899999999999988865543

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=6.1e-18  Score=156.77  Aligned_cols=58  Identities=21%  Similarity=0.187  Sum_probs=53.1

Q ss_pred             hcCCCCCCC-cCCCCCHHHHHHHcCCHHHHHHHHHHCCCcccccCCCCCcHHHHHHHcCC
Q 016470           42 QKGIGESSA-IDNAETPLFLATKSGCIEIVKEIFNVYPQAVEHIDDEGRNILHVAIKYRQ  100 (389)
Q Consensus        42 ~~ga~~n~~-d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~g~  100 (389)
                      ..+.|+|.+ |.+|+||||+||..|+.++|++|+ +.|++++.+|..|+||||.|+..++
T Consensus        94 ~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll-~~gad~~~~d~~G~TpL~~A~~~~~  152 (301)
T d1sw6a_          94 NTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVN  152 (301)
T ss_dssp             TSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred             ccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCcCCcccccHHHHhhhccc
Confidence            357788876 999999999999999999999999 8899999999999999999998764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.66  E-value=1.9e-16  Score=137.63  Aligned_cols=102  Identities=25%  Similarity=0.267  Sum_probs=93.3

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHHHCC
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAIDNAETPLFLATKSGCIEIVKEIFNVYP   78 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d~~G~tpLh~Aa~~g~~~~v~~Ll~~~~   78 (389)
                      +..+.|.++|++++..+   ..+.|+||+++..+..+   .+++++.+++.+|.+|.||||+|+..|+.++++.|+ ++|
T Consensus       104 ~~~~~L~~~~~~~~~~~---~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll-~~g  179 (209)
T d1ot8a_         104 GMVEDLITADADINAAD---NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALL-DNF  179 (209)
T ss_dssp             THHHHHHHTTCCTTCBC---TTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH-HTT
T ss_pred             hhhhhhhhhcccccccC---CCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHH-HCC
Confidence            45678899999998887   55667899999988876   788999999999999999999999999999999999 789


Q ss_pred             CcccccCCCCCcHHHHHHHcCChhhHHHH
Q 016470           79 QAVEHIDDEGRNILHVAIKYRQLEIFELV  107 (389)
Q Consensus        79 ~~~~~~d~~G~t~Lh~A~~~g~~~iv~~L  107 (389)
                      ++++.+|.+|+||||+|+++|+.+++++|
T Consensus       180 ad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         180 ANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.59  E-value=1.2e-17  Score=157.87  Aligned_cols=108  Identities=9%  Similarity=0.103  Sum_probs=88.8

Q ss_pred             HHHHHHHhCCCCCccccccccCCchhhhhhhcCCCch---hhhhcCCCCCCCc--CCCCCHHHHHHHcCCHHHHHHHHHH
Q 016470            2 ELARFLIRRDTSWEITDSIQDQSKPKIHRYGANPNAS---SVDQKGIGESSAI--DNAETPLFLATKSGCIEIVKEIFNV   76 (389)
Q Consensus         2 eiv~~Ll~~ga~vn~~~~~~~~~~~~Lh~a~~~~~~~---~Ll~~ga~~n~~d--~~G~tpLh~Aa~~g~~~~v~~Ll~~   76 (389)
                      |+++.|+++|+++|..+   ..+.||||.|+..|+.+   .|+++|++++..|  .+|.||||+|+++|+.++|++|+ +
T Consensus       107 ~~~~~L~~~~~~in~~~---~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll-~  182 (346)
T d2ajaa1         107 DTLCLLLTSDEIVKVIQ---AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLC-E  182 (346)
T ss_dssp             HHHTTC--CCSSCC--C---HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHH-H
T ss_pred             HHHHHHHhCCCcccccC---CCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHH-H
Confidence            45566899999999988   56678899999999988   8999999998876  45999999999999999999999 5


Q ss_pred             CCCcc---cccCCCCCcHHHHHHHcCChhhHHHHHhcCCc
Q 016470           77 YPQAV---EHIDDEGRNILHVAIKYRQLEIFELVIQMEVP  113 (389)
Q Consensus        77 ~~~~~---~~~d~~G~t~Lh~A~~~g~~~iv~~Ll~~~~~  113 (389)
                      .+++.   +..+.+|.||+|.|+.+|+.+++++|++.|++
T Consensus       183 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~  222 (346)
T d2ajaa1         183 LAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  222 (346)
T ss_dssp             SCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             cCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCC
Confidence            55543   34556678888999999999999999999877