Citrus Sinensis ID: 016507

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
Protein Sequence
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEEEEccccccEEEEEEEccccccEEEEEEEEEEcccccHHccccccccccccEEccccccEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEccEEEEcccccccccEEEEccccccccHHEEEEcccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEccccHHHHHHHccccEEEcccccccccHHHHHHHHccccccEEEEccccHHHHHHHHHHccccccEEEEEEEccccccEEEcccHHEEcccEEEEEEcccccccccHHHHHHHHHcccccccccEEccccHHHHHHHHHHHHccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEEEcHHHHHHHHcccccccccEccccEEEEEEEEEcccccccccccEEEEcccccccccHHHHccccccccccHHHHHccccccccccEEEcccEEEEccccccccEcEEEEEcccEEEccccccHHHHHHHHcHHHHHHHHHHcccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEcHHHcccccHHHEEEEcccccccEEEEEHcHHHHHHHHHHHHHccccEEEEEEEcccccccEEEccHHHHcccEEEEccHHHccHHHHHHHHHHHHHccccccHHHEEEEEEHHHHHHHHHHHHcccccEEEEEEcc
Coil and Loop (DISEMBL)
mdiekpsnktagkpiqcraaiatapgeplvidevivdppnsheVRVRIICTSLChsdvtfwkmkdfpavfprilgHEAIGVVEsvgenvdgvvegdvviphfladctecvgcrskkgnlcsafpfkispwmprdqtsrfkdlrgetihhfvsvssfseytvLDIAHvvkvdptvppnracllscgvstgvgAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKfeigkrfgvtefvnskncgdksvSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVlgvdqpgsqlslssFEVLHSGKILMGslfgglkaksdipILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Flexible Loop (DISEMBL)
mdiekpsnktagkpiqCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSafpfkispwmprdQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRfgvtefvnskncgdksVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Low Complexity Region (SEG)
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIgvvesvgenvdgvvegdvvIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Disordered region (IsUnstruct)
***************QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM**
Disordered Region (DISOPRED)
***************QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG*
Disordered Region (DISEMBL)
************KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Disordered Region (DISPRO)
***********GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	388	2.2.26 [Sep-21-2011]
Q9FH04	390	Alcohol dehydrogenase-lik	yes	no	0.979	0.974	0.740	1e-170
Q9SK87	386	Alcohol dehydrogenase-lik	no	no	0.969	0.974	0.604	1e-131
Q0V7W6	389	Alcohol dehydrogenase-lik	no	no	0.969	0.966	0.598	1e-130
Q9SK86	388	Alcohol dehydrogenase-lik	no	no	0.963	0.963	0.594	1e-130
Q96533	379	Alcohol dehydrogenase cla	no	no	0.951	0.973	0.501	1e-107
A2XAZ3	381	Alcohol dehydrogenase cla	N/A	no	0.966	0.984	0.493	1e-106
Q0DWH1	381	Alcohol dehydrogenase cla	no	no	0.966	0.984	0.493	1e-106
P93629	381	Alcohol dehydrogenase cla	N/A	no	0.963	0.981	0.481	1e-104
P80572	378	Alcohol dehydrogenase cla	N/A	no	0.958	0.984	0.486	1e-103
P25141	382	Alcohol dehydrogenase 1 O	N/A	no	0.971	0.986	0.489	1e-101

>sp|Q9FH04|ADHL7_ARATH Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1

 Score =  598 bits (1542), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 282/381 (74%), Positives = 331/381 (86%), Gaps = 1/381 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC +CV C+S K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FG
Sbjct: 190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFG 249

Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
           VTEFVNS  C    VS++I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD
Sbjct: 250 VTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVD 309

Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
           +PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFEE
Sbjct: 310 KPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEE 369

Query: 367 INSAFDLLIKGKCLRCVIWMG 387
           IN AF LL++GKC+RCV+WMG
Sbjct: 370 INDAFQLLLEGKCIRCVLWMG 390

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1

>sp|Q9SK87|ADHL2_ARATH Alcohol dehydrogenase-like 2 OS=Arabidopsis thaliana GN=At1g22440 PE=2 SV=1

 Score =  467 bits (1202), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 229/379 (60%), Positives = 291/379 (76%), Gaps = 3/379 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-A 68
           T GKPI+C+AAI    GEPLVI+E+ VDPP ++EVR++I+CTSLCH+DVTFWK+   P A
Sbjct: 7   TEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLA 66

Query: 69  VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-I 127
            FPRILGHEA+GVVES+GE VDG  +GDVV+P F   C EC  C S K N C+ +    +
Sbjct: 67  RFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYL 126

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           S       TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V+
Sbjct: 127 SNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVA 186

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TG+GAAW+ A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIGKRFG+
Sbjct: 187 TGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGI 246

Query: 248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 307
           T+FVN   CG+K++S++I +MTD GADY FEC+GLASL++EA+   R G GKTIVLG++Q
Sbjct: 247 TDFVNPALCGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQ 306

Query: 308 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 367
               +SL S+++L  G+ + G+LFGGLK K DIPIL+ RY+ KEL L+  +THE+ FEEI
Sbjct: 307 KALPISLGSYDLLR-GRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEI 365

Query: 368 NSAFDLLIKGKCLRCVIWM 386
           N AF LL +G  +RC+IWM
Sbjct: 366 NKAFHLLAEGNSIRCIIWM 384

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0V7W6|ADHL5_ARATH Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1

 Score =  466 bits (1199), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/379 (59%), Positives = 295/379 (77%), Gaps = 3/379 (0%)

Query: 12  GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
           GKPI+C+AA++  PGE LVI+E+ VDPP ++EVR++IICTSLCH+DV+F K+   P A F
Sbjct: 12  GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
           PRILGHEA+GV+ES+GE+V+G  +GDVV+P F   C EC  C+S K N C+ F    +S 
Sbjct: 72  PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                 TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct: 132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +GAAW+ ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+GK+FG T+
Sbjct: 192 IGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTD 251

Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
           F+NS  CG+  +S++I +MT GG DY FECVGL SL+ EA++  R G GKT+VLG+D+  
Sbjct: 252 FINSTLCGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHL 311

Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
           + +SL SF++L  G+ + GSLFGGLK K DIPIL+  Y+ KEL LD F+THE+KFEEIN 
Sbjct: 312 TPVSLGSFDLLR-GRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINK 370

Query: 370 AFDLLIKGKCLRCVIWMGE 388
           AFDLL++GK LRC++WM +
Sbjct: 371 AFDLLVQGKSLRCILWMNK 389

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9SK86|ADHL1_ARATH Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1

 Score =  465 bits (1197), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/377 (59%), Positives = 291/377 (77%), Gaps = 3/377 (0%)

Query: 12  GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
           GKPI C+AAI    GE LVI+++ VDPP ++EVR++I+CTSLCH+D+TFWK+   P + F
Sbjct: 11  GKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRF 70

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
           PRILGHEA+GVVES+GENVDG  +GDVV+P F   C EC  C+S K N C  +    IS 
Sbjct: 71  PRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISN 130

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                  SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct: 131 TRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTG 190

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +GAAW+ ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+GK+FG T+
Sbjct: 191 IGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTD 250

Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
           F+N   CG+K +S++I +MT+GG DY FECVGLASL+ EA+   R G GKT++LG+++  
Sbjct: 251 FINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHA 310

Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
           + +SL SF++L  G+++ GSLFGGLK+K DIPIL+  Y+ KEL LD F+THE+ F+EIN 
Sbjct: 311 APISLGSFDLLR-GRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINK 369

Query: 370 AFDLLIKGKCLRCVIWM 386
           AF LL +GK LRC++WM
Sbjct: 370 AFALLEEGKSLRCILWM 386

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

>sp|Q96533|ADHX_ARATH Alcohol dehydrogenase class-3 OS=Arabidopsis thaliana GN=ADH2 PE=1 SV=2

 Score =  390 bits (1001), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 190/379 (50%), Positives = 268/379 (70%), Gaps = 10/379 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I C+AA+A  P +PLVI++V V PP + EVR++I+ T+LCH+D   W  KD   +
Sbjct: 3   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGL 62

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC----SAFPF 125
           FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC    SA   
Sbjct: 63  FPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGV 122

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ CLL CG
Sbjct: 123 GI---MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCG 178

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           V TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+E  K+F
Sbjct: 179 VPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF 238

Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           GV EFVN K+  DK + ++I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV
Sbjct: 239 GVNEFVNPKD-HDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 297

Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
              G ++S   F+++ +G++  G+ FGG K+++ +P L+++YM+KE+++D+++TH +   
Sbjct: 298 AASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLG 356

Query: 366 EINSAFDLLIKGKCLRCVI 384
           EIN AFDLL +G CLRCV+
Sbjct: 357 EINKAFDLLHEGTCLRCVL 375

Plays a central role in formaldehyde detoxification.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|A2XAZ3|ADHX_ORYSI Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. indica GN=ADHIII PE=3 SV=1

 Score =  386 bits (991), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/379 (49%), Positives = 266/379 (70%), Gaps = 4/379 (1%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           ++ T G+ I C+AA+A    +P+ I++V V PP + EVRV+I+ T+LCH+D   W  KD 
Sbjct: 2   ASSTQGQVITCKAAVAWEANKPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDP 61

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC      
Sbjct: 62  EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAA 121

Query: 127 ISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL CG
Sbjct: 122 TGVGVMMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCG 180

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           VSTG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+KF++ K F
Sbjct: 181 VSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNF 240

Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           GVTEFVN K+  DK + Q+I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV
Sbjct: 241 GVTEFVNPKD-HDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGV 299

Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
              G ++S   F+++ +G++  G+ FGG K++S +P L+++Y++KE+++D++VTH M   
Sbjct: 300 AASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLT 358

Query: 366 EINSAFDLLIKGKCLRCVI 384
           +IN AFDLL +G CLRCV+
Sbjct: 359 DINKAFDLLHEGGCLRCVL 377

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|Q0DWH1|ADHX_ORYSJ Alcohol dehydrogenase class-3 OS=Oryza sativa subsp. japonica GN=Os02g0815500 PE=2 SV=1

 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 187/379 (49%), Positives = 265/379 (69%), Gaps = 4/379 (1%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           ++ T G+ I C+AA+A     P+ I++V V PP + EVRV+I+ T+LCH+D   W  KD 
Sbjct: 2   ASSTQGQVITCKAAVAWEANRPMTIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDP 61

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC      
Sbjct: 62  EGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAA 121

Query: 127 ISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL CG
Sbjct: 122 TGVGVMMNDRKSRF-SINGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLLGCG 180

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           VSTG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+KF++ K F
Sbjct: 181 VSTGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFDVAKNF 240

Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           GVTEFVN K+  DK + Q+I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV
Sbjct: 241 GVTEFVNPKD-HDKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGV 299

Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
              G ++S   F+++ +G++  G+ FGG K++S +P L+++Y++KE+++D++VTH M   
Sbjct: 300 AASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLNKEIKVDEYVTHSMNLT 358

Query: 366 EINSAFDLLIKGKCLRCVI 384
           +IN AFDLL +G CLRCV+
Sbjct: 359 DINKAFDLLHEGGCLRCVL 377

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P93629|ADHX_MAIZE Alcohol dehydrogenase class-3 OS=Zea mays GN=FDH PE=2 SV=1

 Score =  377 bits (969), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 185/384 (48%), Positives = 265/384 (69%), Gaps = 10/384 (2%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           ++ T G+ I C+AA+A  P +PLVI++V V PP + EVRV+I+ T+LCH+D   W  KD 
Sbjct: 2   ASPTQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRVKILFTALCHTDHYTWSGKDP 61

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC----SA 122
             +FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC    SA
Sbjct: 62  EGLFPCILGHEAAGIVESVGEGVTDVQPGDHVIPCYQAECKECKFCKSGKTNLCGKVRSA 121

Query: 123 FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 182
               +   M  D  SRF  + G+ I+HF+  S+FS+YTV+    V K++P  P ++ CLL
Sbjct: 122 TGVGV---MMNDMKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKINPQAPLDKVCLL 177

Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
            CGV TG+GA W TA VE GS V +FGLG++GLAVAEGA+  GA+R+IG+D+ ++KF++ 
Sbjct: 178 GCGVPTGLGAVWNTAKVESGSVVAVFGLGTVGLAVAEGAKAAGASRVIGIDIDNKKFDVA 237

Query: 243 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 302
           K FGVTEFVN K   DK + Q+++D+TDGG DY FEC+G  S+++ A  C  KGWG +++
Sbjct: 238 KNFGVTEFVNPKE-HDKPIQQVLVDLTDGGVDYSFECIGNVSIMRAALECSDKGWGTSVI 296

Query: 303 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 362
           +GV   G ++S   F+++ +G++  G+ FGG K+++ +P L+ +YM KE+++D+++TH M
Sbjct: 297 VGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVDKYMKKEIKVDEYITHNM 355

Query: 363 KFEEINSAFDLLIKGKCLRCVIWM 386
              +IN AF LL +G CLRCV+ M
Sbjct: 356 NLADINDAFHLLHEGGCLRCVLAM 379

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P80572|ADHX_PEA Alcohol dehydrogenase class-3 OS=Pisum sativum PE=1 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/376 (48%), Positives = 262/376 (69%), Gaps = 4/376 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I C+AA+A  P +PL I++V V PP ++EVR++I+ T+LCH+D      KD   +
Sbjct: 2   TQGQVITCKAAVAWEPNKPLTIEDVEVAPPQANEVRIQILFTALCHTDAYTLGGKDPEGL 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA G+VESVGE V  V  GD VIP + A+C EC  C+S K NLC         
Sbjct: 62  FPCILGHEAAGIVESVGEGVTDVKPGDHVIPSYQAECGECKFCKSPKTNLCGKVRAATGV 121

Query: 130 W-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
             M  D+ SRF  ++G+ I+HF+  S+FS+YTV+    V K+ P  P ++ CLL CGV T
Sbjct: 122 GVMMADRKSRF-SVKGKPIYHFMGTSTFSQYTVVHDVSVAKIHPDAPLDKVCLLGCGVPT 180

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S K++  K FGVT
Sbjct: 181 GLGAVWNTAKVEPGSIVAIFGLGTVGLAVAEGAKSAGASRIIGIDIDSNKYDTAKNFGVT 240

Query: 249 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
           EF+N K+  +K + Q+IID+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV   
Sbjct: 241 EFINPKD-HEKPIQQVIIDLTDGGVDYSFECLGNVSVMRSALECCHKGWGTSVIVGVAAS 299

Query: 309 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 368
           G ++S   F+++ +G++  G+ FGG K++S +P L+++Y+ KE+++D+++TH +   EIN
Sbjct: 300 GQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLLEIN 358

Query: 369 SAFDLLIKGKCLRCVI 384
            AFDLL +G+CLRCV+
Sbjct: 359 KAFDLLHEGQCLRCVL 374

Class-III ADH is remarkably ineffective in oxidizing ethanol, but it readily catalyzes the oxidation of long-chain primary alcohols and the oxidation of S-(hydroxymethyl) glutathione.

Pisum sativum (taxid: 3888)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

EC: 4

>sp|P25141|ADH1_PETHY Alcohol dehydrogenase 1 OS=Petunia hybrida GN=ADH1 PE=3 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/382 (48%), Positives = 251/382 (65%), Gaps = 5/382 (1%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           S+ TAG+ I+C+AA+A   G+PLVI+EV V PP   EVR++I+ TSLCH+DV FW+ K  
Sbjct: 2   SSNTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKMEVRLKILFTSLCHTDVYFWEAKGQ 61

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FPRI GHEA G+VESVGE V  +  GD V+P F  +C +C  C+S++ N+C      
Sbjct: 62  TPLFPRIFGHEAGGIVESVGEGVTDLKPGDHVLPVFTGECQQCRHCKSEESNMCDLLRIN 121

Query: 127 ISPW-MPRDQTSRF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 184
                M  D  +RF KD  G+ I+HFV  S+FSEYTV     V K+DP  P ++ C+LSC
Sbjct: 122 TDRGVMIHDGQTRFSKD--GKPIYHFVGTSTFSEYTVCHSGCVTKIDPQAPLDKVCVLSC 179

Query: 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
           G+STG+GA    A    GSTV IFGLG++GLA AEGAR+ GA+RIIGVD+   +F   K+
Sbjct: 180 GISTGLGATLNVAKPTKGSTVAIFGLGAVGLAAAEGARIAGASRIIGVDLNPSRFNDAKK 239

Query: 245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 304
           FGVTEFVN K+ GDK V Q+I +MTDGG D   EC G  + +  A+ C   GWG  +++G
Sbjct: 240 FGVTEFVNPKDHGDKPVQQVIAEMTDGGVDRSVECTGNVNAMISAFECVHDGWGVAVLVG 299

Query: 305 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 364
           V             +L+  + L G+ FG  K KSDIP ++ +YM KELEL+KF+TH++ F
Sbjct: 300 VPNKDDAFKTHPMNLLNE-RTLKGTFFGNYKPKSDIPSVVDKYMKKELELEKFITHQVPF 358

Query: 365 EEINSAFDLLIKGKCLRCVIWM 386
            EIN AFD ++KG+ +RC+I M
Sbjct: 359 SEINKAFDYMLKGESIRCMITM 380

This protein is responsible for the conversion of alcohols to aldehydes in plants and is important for NAD metabolism during anaerobic respiration.

Petunia hybrida (taxid: 4102)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
255539138	386	alcohol dehydrogenase, putative [Ricinus	0.976	0.981	0.765	1e-174
225459818	384	PREDICTED: alcohol dehydrogenase-like 7	0.979	0.989	0.744	1e-171
7705214	389	alcohol dehydrogenase ADH [Solanum lycop	0.969	0.966	0.742	1e-169
297795321	390	hypothetical protein ARALYDRAFT_494804 [	0.979	0.974	0.732	1e-168
15238330	390	alcohol dehydrogenase-like 7 [Arabidopsi	0.979	0.974	0.740	1e-168
356554319	387	PREDICTED: alcohol dehydrogenase-like 7-	0.987	0.989	0.731	1e-165
356554321	388	PREDICTED: alcohol dehydrogenase-like 7-	0.994	0.994	0.727	1e-165
224065707	398	predicted protein [Populus trichocarpa]	0.992	0.967	0.759	1e-165
7705215	390	alcohol dehydrogenase ADH [Solanum lycop	0.976	0.971	0.733	1e-165
359492331	395	PREDICTED: alcohol dehydrogenase-like 7-	0.976	0.959	0.704	1e-163

>gi|255539138|ref|XP_002510634.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223551335|gb|EEF52821.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  617 bits (1591), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 290/379 (76%), Positives = 334/379 (88%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           + G PI+C+AA+   PGEPLVI+E++V PPN HEVR++IICTSLC SD+TFW++KDFPAV
Sbjct: 8   SVGTPIRCKAAVCRKPGEPLVIEEILVAPPNRHEVRIQIICTSLCQSDITFWRLKDFPAV 67

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FPRILGHEA+GVVESVGE+V    EGD VIP FL DC +C  C SKK NLCS  PFK+SP
Sbjct: 68  FPRILGHEAVGVVESVGEDVKEFKEGDTVIPTFLPDCGDCTDCISKKSNLCSKLPFKVSP 127

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
           WMPR +TSRF DL GE ++HF+SVSSFS+YTV+DIAH+ KVDP++PPNRACLLSCGVSTG
Sbjct: 128 WMPRYETSRFTDLNGEALYHFLSVSSFSQYTVIDIAHLTKVDPSIPPNRACLLSCGVSTG 187

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           VGAAWRTANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD    KFEIGK+FGVTE
Sbjct: 188 VGAAWRTANVEAGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDTNPNKFEIGKKFGVTE 247

Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
           FV++ + G+KS SQ+I +MT GGADYCFECVGLASLV+EAY+CCRKGWGKTIVLGVD+PG
Sbjct: 248 FVSAGDLGNKSASQVINEMTGGGADYCFECVGLASLVREAYSCCRKGWGKTIVLGVDKPG 307

Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
           +QLSLSSF+VLHSGKIL GSLFGGLKAKSDIP+LLKRY  KEL+LD+FVTHE+ FE+IN 
Sbjct: 308 AQLSLSSFDVLHSGKILTGSLFGGLKAKSDIPVLLKRYTAKELQLDEFVTHEINFEDINK 367

Query: 370 AFDLLIKGKCLRCVIWMGE 388
           AFDLLI G+ LRCVIWM +
Sbjct: 368 AFDLLIGGESLRCVIWMNK 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459818|ref|XP_002285916.1| PREDICTED: alcohol dehydrogenase-like 7 [Vitis vinifera] gi|302141683|emb|CBI18886.3| unnamed protein product [Vitis vinifera]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 283/380 (74%), Positives = 335/380 (88%)

Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           + +T GKPI+CRAA+    GEPLV++EV+V PP + EVR+RIICTSLC+SD+TFWK+KD 
Sbjct: 3   AGETRGKPIRCRAAVCWKAGEPLVMEEVMVAPPLAGEVRIRIICTSLCYSDITFWKLKDP 62

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
           P  FPRILGHEA+GVVESVGENV  V EGD+V+P FL DC EC  CRS+K NLCS FPFK
Sbjct: 63  PGCFPRILGHEAVGVVESVGENVSEVTEGDIVLPIFLPDCGECTDCRSEKSNLCSKFPFK 122

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           +SPWMPR ++SRF DL+GE ++HF+ VSSFSEYTV+DIA++ K+DP +PPNRACL SCGV
Sbjct: 123 VSPWMPRYESSRFTDLKGEVLYHFLFVSSFSEYTVVDIANITKIDPNIPPNRACLFSCGV 182

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW+TANVE GSTV IFGLG+IGLAVAEGARLCGA+RIIGVD+  +KFEIGK+FG
Sbjct: 183 STGVGAAWKTANVEKGSTVAIFGLGAIGLAVAEGARLCGASRIIGVDLNPDKFEIGKKFG 242

Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
           VT+FVNS NCG+K V Q+I++MTDGGADYCFECVG ASLV EA+ACCRKGWGKTIVLGVD
Sbjct: 243 VTDFVNSGNCGNKPVKQVIMEMTDGGADYCFECVGAASLVHEAFACCRKGWGKTIVLGVD 302

Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
           +PGS L+  SF++LHSGK LMGSL+GG+K KSDIPILLKRYMDKEL++DKFVTHEM+FE+
Sbjct: 303 RPGSMLNFLSFDILHSGKSLMGSLYGGVKPKSDIPILLKRYMDKELDVDKFVTHEMRFED 362

Query: 367 INSAFDLLIKGKCLRCVIWM 386
           IN AFDLLI+GK LRCV+WM
Sbjct: 363 INKAFDLLIQGKSLRCVLWM 382

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7705214|gb|AAB33480.2| alcohol dehydrogenase ADH [Solanum lycopersicum]

 Score =  600 bits (1548), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 279/376 (74%), Positives = 331/376 (88%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           AGKPI+C+AA+A   GEPLVI+EVIV PP +HEVRV+IICTSLCH+D+T WK+K+FP  F
Sbjct: 11  AGKPIRCKAAVARKAGEPLVIEEVIVAPPKAHEVRVKIICTSLCHTDITLWKLKEFPGCF 70

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           PRILGHEA GVVESVGE+VD + EGD V+P FL DC +CV C+SKK NLCS FP ++SP 
Sbjct: 71  PRILGHEAFGVVESVGEDVDELKEGDSVVPIFLPDCMDCVDCKSKKSNLCSKFPIQVSPL 130

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           + R+ TSRF +  GET+HHF+ +SSFSEYTV+D+ +V K+DP +PPNRACLLSCGVSTGV
Sbjct: 131 LHRNDTSRFSNAAGETLHHFLYISSFSEYTVVDVVNVTKIDPEIPPNRACLLSCGVSTGV 190

Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAAW+TANVE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD+ S KFEIGK+FG+TEF
Sbjct: 191 GAAWKTANVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDINSNKFEIGKQFGITEF 250

Query: 251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 310
           VNSK+C DK +SQ+II+MTDGGADYCFECVGLA+LVQEA+ CCRKGWGKT+VLGVD+P +
Sbjct: 251 VNSKSCVDKPISQVIIEMTDGGADYCFECVGLATLVQEAFTCCRKGWGKTVVLGVDKPDA 310

Query: 311 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
            L+L+SFEVL S K L G+LFGGLK KSD+PIL+KRY+DKEL+L+KFVTHE+ FE+IN A
Sbjct: 311 HLNLNSFEVLQSQKTLTGALFGGLKPKSDVPILVKRYLDKELQLNKFVTHEVNFEDINKA 370

Query: 371 FDLLIKGKCLRCVIWM 386
           FDLLI+GK LRCVIWM
Sbjct: 371 FDLLIQGKSLRCVIWM 386

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297795321|ref|XP_002865545.1| hypothetical protein ARALYDRAFT_494804 [Arabidopsis lyrata subsp. lyrata] gi|297311380|gb|EFH41804.1| hypothetical protein ARALYDRAFT_494804 [Arabidopsis lyrata subsp. lyrata]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 279/381 (73%), Positives = 333/381 (87%), Gaps = 1/381 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP  +EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSRKPIRCKAAVSRKAGEPLVMEEIMVAPPQPYEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC ECV C+S+K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGECVDCKSQKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR + +SRF DL G+T+ HF++VSSFSEYTVLD+A++VK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYENSSRFTDLNGQTLFHFLNVSSFSEYTVLDVANIVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G+ FG
Sbjct: 190 STGVGAAWETAKVEQGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPAKFQVGQNFG 249

Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
           +TEFVNS  C  KSVS++I +MT GGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD
Sbjct: 250 ITEFVNSMTCEKKSVSEVINEMTGGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVD 309

Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
           +PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IP+LLKRY+  ELELDKFVTHEMKFEE
Sbjct: 310 KPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPLLLKRYLSNELELDKFVTHEMKFEE 369

Query: 367 INSAFDLLIKGKCLRCVIWMG 387
           IN AF LL++GKC+RCV+WMG
Sbjct: 370 INDAFQLLLEGKCIRCVLWMG 390

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238330|ref|NP_199040.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana] gi|75333830|sp|Q9FH04.1|ADHL7_ARATH RecName: Full=Alcohol dehydrogenase-like 7 gi|10177010|dbj|BAB10198.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|19698971|gb|AAL91221.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|22136298|gb|AAM91227.1| alcohol dehydrogenase [Arabidopsis thaliana] gi|332007405|gb|AED94788.1| alcohol dehydrogenase-like 7 [Arabidopsis thaliana]

 Score =  598 bits (1542), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 282/381 (74%), Positives = 331/381 (86%), Gaps = 1/381 (0%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct: 10  NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEAIGVVESVGENV  VVEGD V+P F+ DC +CV C+S K NLCS FPFK+
Sbjct: 70  ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query: 128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
           SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct: 130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FG
Sbjct: 190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFG 249

Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
           VTEFVNS  C    VS++I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD
Sbjct: 250 VTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVD 309

Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
           +PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFEE
Sbjct: 310 KPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEE 369

Query: 367 INSAFDLLIKGKCLRCVIWMG 387
           IN AF LL++GKC+RCV+WMG
Sbjct: 370 INDAFQLLLEGKCIRCVLWMG 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554319|ref|XP_003545495.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 1 [Glycine max]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 280/383 (73%), Positives = 329/383 (85%)

Query: 4   EKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM 63
           +K +  + G+PI+C+AAI   PG PL I+E+IV PP   E R+R+ICTSLCHSDVTFWKM
Sbjct: 3   DKLATTSEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTFWKM 62

Query: 64  KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF 123
           +  PA+ PRILGHEA+GVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLCS F
Sbjct: 63  EVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLCSKF 122

Query: 124 PFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 183
           PF++SPWMPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRACLLS
Sbjct: 123 PFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRACLLS 182

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 243
           CGVSTGVGAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E GK
Sbjct: 183 CGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYETGK 242

Query: 244 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 303
           +FG+T+FV++    +KSVSQ+II+MT GGADYCFECVG+A+LVQEAYA CRKGWGK IVL
Sbjct: 243 KFGLTDFVHAGESENKSVSQVIIEMTGGGADYCFECVGMATLVQEAYASCRKGWGKAIVL 302

Query: 304 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 363
           GV++PGS LSLS  EVLHSGK L+G LFGGLK KSD+PILLKRYMDKEL LD+FVTHE++
Sbjct: 303 GVEKPGSMLSLSCNEVLHSGKSLVGCLFGGLKPKSDVPILLKRYMDKELNLDEFVTHEVE 362

Query: 364 FEEINSAFDLLIKGKCLRCVIWM 386
           F++IN AFDLLI+G+CLRCVIWM
Sbjct: 363 FKDINKAFDLLIEGQCLRCVIWM 385

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554321|ref|XP_003545496.1| PREDICTED: alcohol dehydrogenase-like 7-like isoform 2 [Glycine max]

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 281/386 (72%), Positives = 329/386 (85%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           M  +  S+   G+PI+C+AAI   PG PL I+E+IV PP   E R+R+ICTSLCHSDVTF
Sbjct: 1   MASQNSSSLCEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHSDVTF 60

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           WKM+  PA+ PRILGHEA+GVVESVGE+V  V +GDVV+P FL DC EC+ C+S K NLC
Sbjct: 61  WKMEVPPAICPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLPDCGECIDCKSSKSNLC 120

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
           S FPF++SPWMPR  TSRF DL+G+ IHHF+ VSSFSEYTV+DIAH+ K+DP +PPNRAC
Sbjct: 121 SKFPFEVSPWMPRHATSRFTDLKGDIIHHFLFVSSFSEYTVVDIAHLTKIDPAIPPNRAC 180

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           LLSCGVSTGVGAAWRTA VE GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  EK+E
Sbjct: 181 LLSCGVSTGVGAAWRTAGVEPGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVNPEKYE 240

Query: 241 IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT 300
            GK+FG+T+FV++    +KSVSQ+II+MT GGADYCFECVG+A+LVQEAYA CRKGWGK 
Sbjct: 241 TGKKFGLTDFVHAGESENKSVSQVIIEMTGGGADYCFECVGMATLVQEAYASCRKGWGKA 300

Query: 301 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH 360
           IVLGV++PGS LSLS  EVLHSGK L+G LFGGLK KSD+PILLKRYMDKEL LD+FVTH
Sbjct: 301 IVLGVEKPGSMLSLSCNEVLHSGKSLVGCLFGGLKPKSDVPILLKRYMDKELNLDEFVTH 360

Query: 361 EMKFEEINSAFDLLIKGKCLRCVIWM 386
           E++F++IN AFDLLI+G+CLRCVIWM
Sbjct: 361 EVEFKDINKAFDLLIEGQCLRCVIWM 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065707|ref|XP_002301931.1| predicted protein [Populus trichocarpa] gi|222843657|gb|EEE81204.1| predicted protein [Populus trichocarpa]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 293/386 (75%), Positives = 341/386 (88%), Gaps = 1/386 (0%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           MD EK S + AGKPI C+AA+A  PGEPLVI+E+IV PP+ HEVRVRIICTSLC SDVTF
Sbjct: 1   MDGEKFSVE-AGKPILCKAAVARKPGEPLVIEEIIVAPPSHHEVRVRIICTSLCQSDVTF 59

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
           WK+KD PAVFPRILGHEAIGVVESVGE+VD VVEGDVVIP FL DC +C  C+SKK NLC
Sbjct: 60  WKLKDLPAVFPRILGHEAIGVVESVGEDVDEVVEGDVVIPVFLPDCGDCADCKSKKSNLC 119

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
           S  PF++SPWMPRD+TSRF +L+GE ++HF++VSSFSEYTV+D AH+VK+DP++PP++AC
Sbjct: 120 SKLPFQVSPWMPRDKTSRFTNLKGEVLYHFLNVSSFSEYTVVDTAHIVKIDPSIPPSKAC 179

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
           LLSCGVSTGVGAAWRTANVE GSTVVIFGLGSIGLAVAEGAR+ GAT+IIGVDV  EKFE
Sbjct: 180 LLSCGVSTGVGAAWRTANVEAGSTVVIFGLGSIGLAVAEGARISGATKIIGVDVNQEKFE 239

Query: 241 IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT 300
           I K+FGVT+FVN   CGDK VSQ+I +MT GGADYCFECVGL SL+++AYACCRKGWGKT
Sbjct: 240 IAKKFGVTDFVNVGECGDKPVSQVINEMTGGGADYCFECVGLVSLMEQAYACCRKGWGKT 299

Query: 301 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH 360
           I+LGV++P S++SL   +VL SGK L G+LFGGLKAKSDIPILLKRYMDKELELDK+VTH
Sbjct: 300 IILGVEKPESRVSLPCADVLQSGKTLTGALFGGLKAKSDIPILLKRYMDKELELDKYVTH 359

Query: 361 EMKFEEINSAFDLLIKGKCLRCVIWM 386
           E+ F++IN AFDLL++GK LRCVIWM
Sbjct: 360 EINFKDINKAFDLLLEGKSLRCVIWM 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7705215|gb|AAB33481.2| alcohol dehydrogenase ADH [Solanum lycopersicum]

 Score =  586 bits (1510), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 278/379 (73%), Positives = 326/379 (86%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           +KTAGKPI+CRAA+A   GEPLVI+EVIV PP +HEVR++IICTSLCH+D+T WK+K+FP
Sbjct: 10  SKTAGKPIRCRAAVARKAGEPLVIEEVIVAPPKAHEVRLKIICTSLCHTDITLWKLKEFP 69

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
             FPRILGHEA GVVESVGE+VD + EGD V+P FL DC +CV C+SKK NLCS FP + 
Sbjct: 70  GCFPRILGHEAFGVVESVGEDVDHLKEGDSVVPIFLPDCMDCVDCKSKKSNLCSKFPIQS 129

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           S  + RD TSRF +  GET+HH++ +SSFSEYTV+D+ +V K+DP +PPNRACLLSCGVS
Sbjct: 130 SLLLHRDDTSRFTNADGETLHHYLYISSFSEYTVVDVVNVTKIDPEIPPNRACLLSCGVS 189

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TGVGAAW+TANVE GSTVVIFGLGS+GLAVAEGARLCGATRIIGV   S+KFEIGK+FGV
Sbjct: 190 TGVGAAWKTANVEPGSTVVIFGLGSVGLAVAEGARLCGATRIIGVGRNSDKFEIGKQFGV 249

Query: 248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 307
           TEFVNSK+CGDK VSQ+II+MT+GGADYC ECVGL  +VQEA+ACCRKGWGKTIVLGVD+
Sbjct: 250 TEFVNSKSCGDKPVSQVIIEMTNGGADYCNECVGLGRVVQEAFACCRKGWGKTIVLGVDK 309

Query: 308 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 367
           P ++L+L+SFEVL S K LMGS FGGLK KSD+   LKRY+DKELELDKFVTHE+  E+I
Sbjct: 310 PDARLNLNSFEVLQSNKTLMGSFFGGLKPKSDVHTSLKRYLDKELELDKFVTHEVNLEDI 369

Query: 368 NSAFDLLIKGKCLRCVIWM 386
           N AFDLLI+ K LRCVIWM
Sbjct: 370 NKAFDLLIQLKTLRCVIWM 388

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492331|ref|XP_002285917.2| PREDICTED: alcohol dehydrogenase-like 7-like [Vitis vinifera] gi|302141684|emb|CBI18887.3| unnamed protein product [Vitis vinifera]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 267/379 (70%), Positives = 327/379 (86%)

Query: 8   NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
           ++T GKPI+CRAA++   GEPLV++EV+V PP + EVR+RIICTSLCHSD+TFWK+K+ P
Sbjct: 15  SQTRGKPIRCRAAVSRKAGEPLVMEEVMVAPPMAGEVRIRIICTSLCHSDLTFWKLKEPP 74

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
           A FPRILGHEA+GVVESVGENV  V EGD V+P F+ DC EC+ CRS+K NLCS FPF+I
Sbjct: 75  ACFPRILGHEAVGVVESVGENVTEVAEGDTVLPIFIPDCGECMDCRSEKSNLCSKFPFEI 134

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
           SPW+PR ++SRF DL+GE ++HF++VSSFSEYTV+DI ++ K+ P +PPN+ACL SCGVS
Sbjct: 135 SPWLPRHKSSRFTDLKGEVLYHFLNVSSFSEYTVVDIDNITKISPAIPPNKACLFSCGVS 194

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TGVGAAWRTA VE GSTVVIFGLG+IGLAVAEGARLCGA+RIIGVD   EKF++ K+FGV
Sbjct: 195 TGVGAAWRTAKVEKGSTVVIFGLGAIGLAVAEGARLCGASRIIGVDTNLEKFDVAKKFGV 254

Query: 248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 307
           TEFVN +NCGDK VSQ I++MTDGGADYCFECVG ASLVQ+A+A CRKGWGK I++GVD+
Sbjct: 255 TEFVNPRNCGDKPVSQAIVEMTDGGADYCFECVGFASLVQDAFASCRKGWGKAIMVGVDK 314

Query: 308 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 367
           PG+ L+ SS E+LH GK +MGS++GGLK KS IP+LL+R +DKEL +D F+THEMKFE+I
Sbjct: 315 PGAMLNFSSVEMLHCGKSVMGSIYGGLKPKSHIPVLLQRLVDKELNVDNFITHEMKFEDI 374

Query: 368 NSAFDLLIKGKCLRCVIWM 386
           N AFDLL KGK +RCV+WM
Sbjct: 375 NKAFDLLAKGKSIRCVMWM 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	388
TAIR|locus:2157627	390	AT5G42250 [Arabidopsis thalian	0.979	0.974	0.698	7.9e-149
TAIR|locus:2120663	389	AT4G22110 [Arabidopsis thalian	0.969	0.966	0.567	4.5e-114
TAIR|locus:2009512	386	AT1G22440 [Arabidopsis thalian	0.969	0.974	0.567	2.5e-113
TAIR|locus:2009522	388	AT1G22430 [Arabidopsis thalian	0.963	0.963	0.554	5.2e-113
TAIR|locus:2184575	381	AT5G24760 [Arabidopsis thalian	0.943	0.960	0.454	2.9e-87
TAIR|locus:2025237	379	ADH1 "alcohol dehydrogenase 1"	0.966	0.989	0.440	3.3e-86
ZFIN|ZDB-GENE-011003-1	376	adh5 "alcohol dehydrogenase 5"	0.958	0.989	0.434	3.4e-84
TAIR|locus:2035619	394	AT1G32780 [Arabidopsis thalian	0.963	0.949	0.448	1.3e-82
UNIPROTKB|J9PA83	374	ADH5 "Uncharacterized protein"	0.956	0.991	0.414	4.1e-81
UNIPROTKB|F1PLM5	376	F1PLM5 "Uncharacterized protei	0.945	0.976	0.416	8.5e-81

TAIR|locus:2157627 AT5G42250 [Arabidopsis thaliana (taxid:3702)]

 Score = 1453 (516.5 bits), Expect = 7.9e-149, P = 7.9e-149
 Identities = 266/381 (69%), Positives = 315/381 (82%)

Query:     8 NKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP 67
             NK++ KPI+C+AA++   GEPLV++E++V PP   EVR+RIICT+LCHSDVTFWK++  P
Sbjct:    10 NKSSHKPIRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPP 69

Query:    68 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
             A FPRILGHEAI                   +P F+ DC +CV C+S K NLCS FPFK+
Sbjct:    70 ACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKV 129

Query:   128 SPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
             SPWMPR D +SRF DL GET+ HF++VSSFSEYTVLD+A+VVK+D ++PP+RACLLSCGV
Sbjct:   130 SPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGV 189

Query:   187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
             STGVGAAW TA VE GSTVVIFGLGSIGLAVAEGARLCGA+RIIGVD+   KF++G++FG
Sbjct:   190 STGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGASRIIGVDINPTKFQVGQKFG 249

Query:   247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
             VTEFVNS  C    VS++I +MTDGGADYCFECVG +SLVQEAYACCR+GWGKTI LGVD
Sbjct:   250 VTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVD 309

Query:   307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
             +PGSQ+ L SF+VLH GKILMGSLFGGLKAK+ IPILLKRY+  ELELDKFVTHEMKFEE
Sbjct:   310 KPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEE 369

Query:   367 INSAFDLLIKGKCLRCVIWMG 387
             IN AF LL++GKC+RCV+WMG
Sbjct:   370 INDAFQLLLEGKCIRCVLWMG 390

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2120663 AT4G22110 [Arabidopsis thaliana (taxid:3702)]

 Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
 Identities = 215/379 (56%), Positives = 278/379 (73%)

Query:    12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
             GKPI+C+AA++  PGE LVI+E+ VDPP ++EVR++IICTSLCH+DV+F K+   P A F
Sbjct:    12 GKPIRCKAAVSRKPGEALVIEEIHVDPPQAYEVRIKIICTSLCHTDVSFSKIDSGPLARF 71

Query:    71 PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
             PRILGHEA+                   +P F   C EC  C+S K N C+ F    +S 
Sbjct:    72 PRILGHEAVGVIESIGEHVNGFQQGDVVLPVFHPHCEECRDCKSSKSNWCARFADDFLSN 131

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                   TSRFKD  GE I+HF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct:   132 TRRYGMTSRFKDSFGEDIYHFLFVSSFSEYTVVDIAHLVKISPDIPVDKAALLSCGVSTG 191

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
             +GAAW+ ANVE GSTV +FGLG++GLAV EGARL GA +IIGVD+  EKFE+GK+FG T+
Sbjct:   192 IGAAWKVANVEKGSTVAVFGLGAVGLAVGEGARLRGAGKIIGVDLNPEKFELGKKFGFTD 251

Query:   250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
             F+NS  CG+  +S++I +MT GG DY FECVGL SL+ EA++  R G GKT+VLG+D+  
Sbjct:   252 FINSTLCGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHL 311

Query:   310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             + +SL SF++L  G+ + GSLFGGLK K DIPIL+  Y+ KEL LD F+THE+KFEEIN 
Sbjct:   312 TPVSLGSFDLLR-GRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINK 370

Query:   370 AFDLLIKGKCLRCVIWMGE 388
             AFDLL++GK LRC++WM +
Sbjct:   371 AFDLLVQGKSLRCILWMNK 389

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2009512 AT1G22440 [Arabidopsis thaliana (taxid:3702)]

 Score = 1118 (398.6 bits), Expect = 2.5e-113, P = 2.5e-113
 Identities = 215/379 (56%), Positives = 275/379 (72%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-A 68
             T GKPI+C+AAI    GEPLVI+E+ VDPP ++EVR++I+CTSLCH+DVTFWK+   P A
Sbjct:     7 TEGKPIRCKAAILRKAGEPLVIEEIQVDPPQAYEVRIKILCTSLCHTDVTFWKLDSGPLA 66

Query:    69 VFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-I 127
              FPRILGHEA+                   +P F   C EC  C S K N C+ +    +
Sbjct:    67 RFPRILGHEAVGVVESIGEKVDGFKQGDVVLPVFHPQCEECKECISPKSNWCTKYTNDYL 126

Query:   128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
             S       TSRFKD RGE IHHF+ VSSF+EYTV+DIAH+VK+ P +P + A LLSC V+
Sbjct:   127 SNTRRYGMTSRFKDSRGEDIHHFIFVSSFTEYTVVDIAHLVKISPEIPVDIAALLSCSVA 186

Query:   188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
             TG+GAAW+ A+VE GSTVVIFGLG++GLAVAEG RL GA +IIGVD+   KFEIGKRFG+
Sbjct:   187 TGLGAAWKVADVEEGSTVVIFGLGAVGLAVAEGVRLRGAAKIIGVDLNPAKFEIGKRFGI 246

Query:   248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 307
             T+FVN   CG+K++S++I +MTD GADY FEC+GLASL++EA+   R G GKTIVLG++Q
Sbjct:   247 TDFVNPALCGEKTISEVIREMTDVGADYSFECIGLASLMEEAFKSTRPGSGKTIVLGMEQ 306

Query:   308 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 367
                 +SL S+++L  G+ + G+LFGGLK K DIPIL+ RY+ KEL L+  +THE+ FEEI
Sbjct:   307 KALPISLGSYDLLR-GRTVCGTLFGGLKPKLDIPILVDRYLKKELNLEDLITHELSFEEI 365

Query:   368 NSAFDLLIKGKCLRCVIWM 386
             N AF LL +G  +RC+IWM
Sbjct:   366 NKAFHLLAEGNSIRCIIWM 384

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2009522 AT1G22430 [Arabidopsis thaliana (taxid:3702)]

 Score = 1115 (397.6 bits), Expect = 5.2e-113, P = 5.2e-113
 Identities = 209/377 (55%), Positives = 274/377 (72%)

Query:    12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVF 70
             GKPI C+AAI    GE LVI+++ VDPP ++EVR++I+CTSLCH+D+TFWK+   P + F
Sbjct:    11 GKPITCKAAICRKAGEALVIEDIHVDPPQAYEVRIKILCTSLCHTDLTFWKLSFGPISRF 70

Query:    71 PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK-ISP 129
             PRILGHEA+                   +P F   C EC  C+S K N C  +    IS 
Sbjct:    71 PRILGHEAVGVVESIGENVDGFKQGDVVLPVFHPYCEECKDCKSSKTNWCDRYAEDFISN 130

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                    SRFKD  GE IHHF+ VSSFSEYTV+DIAH+VK+ P +P ++A LLSCGVSTG
Sbjct:   131 TRRYGMASRFKDSSGEVIHHFLFVSSFSEYTVVDIAHLVKISPEIPVDKAALLSCGVSTG 190

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
             +GAAW+ ANVE GST+ IFGLG++GLAVAEGARL GA +IIG+D  S+KFE+GK+FG T+
Sbjct:   191 IGAAWKVANVEEGSTIAIFGLGAVGLAVAEGARLRGAAKIIGIDTNSDKFELGKKFGFTD 250

Query:   250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
             F+N   CG+K +S++I +MT+GG DY FECVGLASL+ EA+   R G GKT++LG+++  
Sbjct:   251 FINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHA 310

Query:   310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             + +SL SF++L  G+++ GSLFGGLK+K DIPIL+  Y+ KEL LD F+THE+ F+EIN 
Sbjct:   311 APISLGSFDLLR-GRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINK 369

Query:   370 AFDLLIKGKCLRCVIWM 386
             AF LL +GK LRC++WM
Sbjct:   370 AFALLEEGKSLRCILWM 386

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

TAIR|locus:2184575 AT5G24760 [Arabidopsis thaliana (taxid:3702)]

 Score = 872 (312.0 bits), Expect = 2.9e-87, P = 2.9e-87
 Identities = 169/372 (45%), Positives = 240/372 (64%)

Query:    15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
             I C AA+A   GEPLV++EV V PP   E+R++++CTSLC SD++ W+ +   ++ PRI 
Sbjct:    14 ITCNAAVAWRAGEPLVMEEVEVSPPQPLEIRIKVVCTSLCRSDLSAWESQ---SLLPRIF 70

Query:    75 GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             GHEA                    +  F  +C  C  C S K N+C     +    M  D
Sbjct:    71 GHEAAGIVESIGEGVTEFEKGDHVLAVFTGECGSCRHCISGKSNMCQVLGMERKGLMHSD 130

Query:   135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
             Q +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+GAAW
Sbjct:   131 QKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 189

Query:   195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
               A+V+ GS+VVIFGLG++GL+VA+GA+L GA +I+GVD+   K E  K FGVT+F+NS 
Sbjct:   190 NVADVQKGSSVVIFGLGTVGLSVAQGAKLRGAAQILGVDINPAKAEQAKTFGVTDFINSN 249

Query:   255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 314
             +  +  + Q+I  MT GGAD+ FECVG   +   A   C  GWG T+ LGV +   ++S 
Sbjct:   250 DLSEP-IPQVIKRMTGGGADFSFECVGDTGIATTALQSCSDGWGMTVTLGVPKAKPEVS- 307

Query:   315 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 374
             + + +  SGK L G+LFGG K KSD+P L+ +YM+KE+ +D+F+TH + F+EIN AF L+
Sbjct:   308 AHYGLFLSGKSLKGTLFGGWKPKSDLPSLIDKYMNKEIMIDEFITHNLSFDEINKAFVLM 367

Query:   375 IKGKCLRCVIWM 386
              +GKCLRCV+ M
Sbjct:   368 REGKCLRCVLHM 379

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016747 "transferase activity, transferring acyl groups other than amino-acyl groups" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009611 "response to wounding" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

TAIR|locus:2025237 ADH1 "alcohol dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 862 (308.5 bits), Expect = 3.3e-86, P = 3.3e-86
 Identities = 167/379 (44%), Positives = 234/379 (61%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
             T G+ I+C+AA+A   G+PLVI+EV V PP  HEVR++I+ TSLCH+DV FW+ K    +
Sbjct:     3 TTGQIIRCKAAVAWEAGKPLVIEEVEVAPPQKHEVRIKILFTSLCHTDVYFWEAKGQTPL 62

Query:    70 FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
             FPRI GHEA                    +P F  +C EC  C S++ N+C         
Sbjct:    63 FPRIFGHEAGGIVESVGEGVTDLQPGDHVLPIFTGECGECRHCHSEESNMCDLLRINTER 122

Query:   130 W-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
               M  D  SRF  + G+ I+HF+  S+FSEYTV+    V K++P  P ++ C++SCG+ST
Sbjct:   123 GGMIHDGESRFS-INGKPIYHFLGTSTFSEYTVVHSGQVAKINPDAPLDKVCIVSCGLST 181

Query:   189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
             G+GA    A  + G +V IFGLG++GL  AEGAR+ GA+RIIGVD  S++F+  K FGVT
Sbjct:   182 GLGATLNVAKPKKGQSVAIFGLGAVGLGAAEGARIAGASRIIGVDFNSKRFDQAKEFGVT 241

Query:   249 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
             E VN K+  DK + Q+I +MTDGG D   EC G    + +A+ C   GWG  +++GV   
Sbjct:   242 ECVNPKD-HDKPIQQVIAEMTDGGVDRSVECTGSVQAMIQAFECVHDGWGVAVLVGVPSK 300

Query:   309 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 368
                        L+  + L G+ FG  K K+DIP ++++YM+KELEL+KF+TH + F EIN
Sbjct:   301 DDAFKTHPMNFLNE-RTLKGTFFGNYKPKTDIPGVVEKYMNKELELEKFITHTVPFSEIN 359

Query:   369 SAFDLLIKGKCLRCVIWMG 387
              AFD ++KG+ +RC+I MG
Sbjct:   360 KAFDYMLKGESIRCIITMG 378

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0045333 "cellular respiration" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IGI

GO:0001666 "response to hypoxia" evidence=IEP;RCA

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0004022 "alcohol dehydrogenase (NAD) activity" evidence=ISS;IMP

ZFIN|ZDB-GENE-011003-1 adh5 "alcohol dehydrogenase 5" [Danio rerio (taxid:7955)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 163/375 (43%), Positives = 231/375 (61%)

Query:    10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
             T GK I+C+AA+A   G+PL I+EV V PP +HEVRV+I  T +CH+D       D   +
Sbjct:     3 TTGKVIKCKAAVAWEAGKPLTIEEVEVAPPKAHEVRVKIHATGVCHTDAYTLSGSDPEGL 62

Query:    70 FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
             FP ILGHE                     IP ++  C EC  C++ K NLC         
Sbjct:    63 FPVILGHEGAGTVESVGEGVTKFKPGDTVIPLYVPQCGECKFCKNPKTNLCQKIRVTQGQ 122

Query:   130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +  D TSRF   +G+ + HF+  S+FSEYTV+    + KVD   P ++ CLL CG+STG
Sbjct:   123 GLMPDNTSRFT-CKGKQLFHFMGTSTFSEYTVVAEISLAKVDEHAPLDKVCLLGCGISTG 181

Query:   190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
              GAA  TA VE GST  +FGLG++GLAV  G +  GATRIIG+DV  +KFEI K+FG TE
Sbjct:   182 YGAAINTAKVEAGSTCAVFGLGAVGLAVVMGCKSAGATRIIGIDVNPDKFEIAKKFGATE 241

Query:   250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
             FVN K+   K + ++++++TDGG DY FEC+G   +++ A   C KGWG ++++GV   G
Sbjct:   242 FVNPKD-HSKPIQEVLVELTDGGVDYSFECIGNVGIMRAALEACHKGWGTSVIIGVAGAG 300

Query:   310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
              ++S   F+++ +G+   G+ FGG K+   +P L+  YM+K+L +D+FVTH + F +IN 
Sbjct:   301 QEISTRPFQLV-TGRTWKGTAFGGWKSVESVPKLVNDYMNKKLMVDEFVTHTLPFAQINE 359

Query:   370 AFDLLIKGKCLRCVI 384
             AFDL+  GK +R V+
Sbjct:   360 AFDLMHAGKSIRAVL 374

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2035619 AT1G32780 [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 173/386 (44%), Positives = 237/386 (61%)

Query:     9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFP 67
             +T GK I C+AA+   P  PLVI E+ VDPP   EVRV+I+ +S+CH+D+  W    +  
Sbjct:     3 ETQGKVITCKAAVVWGPKVPLVIQEICVDPPQKMEVRVKILYSSICHTDLGCWNGTNEAE 62

Query:    68 AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF---P 124
               FPRILGHEA+                   IP F  +C EC  C+ ++ NLC  +   P
Sbjct:    63 RAFPRILGHEAVGIVESVGEGVKDVKEGDYVIPTFNGECGECKVCKREESNLCERYHVDP 122

Query:   125 FK---ISPWMPRDQTSRFKD---LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR 178
              K   ++    R  T+  KD    + + I+HF++ S+F+EYTVLD A VVK+DP  P  +
Sbjct:   123 MKRVMVNDGGTRFSTTINKDGGSSQSQPIYHFLNTSTFTEYTVLDSACVVKIDPNSPLKQ 182

Query:   179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
               LLSCGVSTGVGAAW  ANV+ G +  +FGLGS+GLAVAEGAR  GA+RIIGVD  + K
Sbjct:   183 MSLLSCGVSTGVGAAWNIANVKEGKSTAVFGLGSVGLAVAEGARARGASRIIGVDANASK 242

Query:   239 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWG 298
             FE GK  GVT+F+N K+   K V Q+I ++T GG DY FEC G   +++EA+     GWG
Sbjct:   243 FEKGKLMGVTDFINPKDL-TKPVHQMIREITGGGVDYSFECTGNVDVLREAFLSTHVGWG 301

Query:   299 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFV 358
              T+++G+      L L   E L  G+ + GS+FGG K KS +P   ++ M   ++L+ F+
Sbjct:   302 STVLVGIYPTPRTLPLHPME-LFDGRRITGSVFGGFKPKSQLPNFAQQCMKGVVKLEPFI 360

Query:   359 THEMKFEEINSAFDLLIKGKCLRCVI 384
             T+E+ FE+IN AF LL  GK LRC++
Sbjct:   361 TNELPFEKINDAFQLLRDGKSLRCIL 386

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|J9PA83 ADH5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 155/374 (41%), Positives = 229/374 (61%)

Query:    11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
             A + I+C+AA+A   G+PL I+EV V PP +HEVR++II T++CH+D       D    F
Sbjct:     2 ANQVIKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSF 61

Query:    71 PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
             P ILGHE                     IP ++  C EC  C + K NLC          
Sbjct:    62 PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121

Query:   131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
             +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct:   122 LMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180

Query:   191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
             GAA  TA VE GST  +FGLG +GLA   G ++ GA+RIIGVD+  +KF   K FG +E 
Sbjct:   181 GAALNTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASEC 240

Query:   251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 310
             +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++++GV   G 
Sbjct:   241 INPQDFS-KPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGE 299

Query:   311 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
             +++   F+++ +G++  G+ FGG K+   +P L+  YM +++++D+FVTH + F++IN A
Sbjct:   300 EIATRPFQLV-TGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEA 358

Query:   371 FDLLIKGKCLRCVI 384
             FDLL  GK +R V+
Sbjct:   359 FDLLHAGKSIRTVV 372

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PLM5 F1PLM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
 Identities = 154/370 (41%), Positives = 227/370 (61%)

Query:    15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
             I+C+AA+A   G+PL I+EV V PP +HEVR++II T++CH+D       D    FP IL
Sbjct:     8 IKCKAAVAWEAGKPLSIEEVEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGSFPVIL 67

Query:    75 GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             GHE                     IP ++  C EC  C + K NLC          +  D
Sbjct:    68 GHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPD 127

Query:   135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
              TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG GAA 
Sbjct:   128 GTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGYGAAL 186

Query:   195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
              TA VE GST  +FGLG +GLA   G ++ GA+RIIGVD+  +KF   K FG +E +N +
Sbjct:   187 NTAKVEPGSTCAVFGLGGVGLATIMGCKVAGASRIIGVDINKDKFSRAKEFGASECINPQ 246

Query:   255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 314
             +   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++++GV   G +++ 
Sbjct:   247 DFS-KPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVIVGVAASGEEIAT 305

Query:   315 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 374
               F+++ +G++  G+ FGG K+   +P L+  YM +++++D+FVTH + F++IN AFDLL
Sbjct:   306 RPFQLV-TGRVWKGTAFGGWKSVESVPKLVSEYMSRKIKVDEFVTHSLSFDQINEAFDLL 364

Query:   375 IKGKCLRCVI 384
               GK +R V+
Sbjct:   365 HAGKSIRTVV 374

GO:0051903 "S-(hydroxymethyl)glutathione dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006069 "ethanol oxidation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P19854	ADHX_HORSE	1, ., 1, ., 1, ., 2, 8, 4	0.4513	0.9458	0.9812	yes	no
P12711	ADHX_RAT	1, ., 1, ., 1, ., 2, 8, 4	0.4414	0.9613	0.9973	yes	no
P11766	ADHX_HUMAN	1, ., 1, ., 1, ., 2, 8, 4	0.4438	0.9561	0.9919	yes	no
P46415	ADHX_DROME	1, ., 1, ., 1, ., 2, 8, 4	0.4308	0.9613	0.9841	yes	no
Q3ZC42	ADHX_BOVIN	1, ., 1, ., 1, ., 2, 8, 4	0.4438	0.9561	0.9919	yes	no
P32771	FADH_YEAST	1, ., 1, ., 1, ., -	0.4348	0.9819	0.9870	yes	no
Q9FH04	ADHL7_ARATH	1, ., 1, ., 1, ., 1	0.7401	0.9793	0.9743	yes	no
P28474	ADHX_MOUSE	1, ., 1, ., 1, ., 2, 8, 4	0.4308	0.9613	0.9973	yes	no
Q54TC2	ADHX_DICDI	1, ., 1, ., 1, ., 2, 8, 4	0.4588	0.9613	0.9841	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
4th Layer	1.1.1.1	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.8__620__AT5G42250.1	annotation not avaliable (390 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	scaffold_402974.1	annotation not avaliable (284 aa)	•	•	•			•	•		0.597

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	388
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	0.0
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	1e-162
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	1e-159
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	1e-153
PLN02827	378	PLN02827, PLN02827, Alcohol dehydrogenase-like	1e-141
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	1e-133
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-132
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	1e-126
TIGR02818	368	TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutat	1e-125
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	1e-123
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	6e-86
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	2e-83
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	2e-82
TIGR03451	358	TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothi	5e-66
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	2e-56
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	3e-53
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	4e-53
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	7e-50
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	1e-44
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	1e-44
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	2e-43
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	4e-43
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	4e-39
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	4e-39
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	7e-39
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	2e-38
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	5e-38
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	6e-38
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	2e-36
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	2e-35
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	2e-35
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	6e-35
cd08297	341	cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CA	2e-34
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	2e-33
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	8e-32
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	5e-31
cd08245	330	cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD	6e-31
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	1e-30
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	7e-29
PRK13771	334	PRK13771, PRK13771, putative alcohol dehydrogenase	1e-28
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	2e-28
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	1e-27
cd05281	341	cd05281, TDH, Threonine dehydrogenase	2e-27
cd05283	337	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CA	1e-26
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	1e-25
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	7e-25
cd08249	339	cd08249, enoyl_reductase_like, enoyl_reductase_lik	3e-24
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	4e-24
cd08298	329	cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CA	8e-24
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	5e-23
cd08265	384	cd08265, Zn_ADH3, Alcohol dehydrogenases of the MD	1e-22
pfam08240	108	pfam08240, ADH_N, Alcohol dehydrogenase GroES-like	3e-22
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	4e-22
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	6e-22
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	3e-20
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	6e-20
cd08266	342	cd08266, Zn_ADH_like1, Alcohol dehydrogenases of t	6e-20
cd08296	333	cd08296, CAD_like, Cinnamyl alcohol dehydrogenases	1e-18
PRK10083	339	PRK10083, PRK10083, putative oxidoreductase; Provi	9e-18
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	1e-17
PRK10309	347	PRK10309, PRK10309, galactitol-1-phosphate dehydro	1e-17
cd08230	355	cd08230, glucose_DH, Glucose dehydrogenase	2e-17
PRK09422	338	PRK09422, PRK09422, ethanol-active dehydrogenase/a	6e-17
cd05289	309	cd05289, MDR_like_2, alcohol dehydrogenase and qui	3e-16
cd08241	323	cd08241, QOR1, Quinone oxidoreductase (QOR)	2e-13
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	4e-13
cd08271	325	cd08271, MDR5, Medium chain dehydrogenases/reducta	7e-13
cd08272	326	cd08272, MDR6, Medium chain dehydrogenases/reducta	9e-13
cd08264	325	cd08264, Zn_ADH_like2, Alcohol dehydrogenases of t	2e-12
cd08276	336	cd08276, MDR7, Medium chain dehydrogenases/reducta	2e-12
PLN02178	375	PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase	2e-12
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	1e-11
TIGR02819	393	TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenas	3e-10
TIGR03366	280	TIGR03366, HpnZ_proposed, putative phosphonate cat	3e-10
cd05286	320	cd05286, QOR2, Quinone oxidoreductase (QOR)	3e-10
cd08282	375	cd08282, PFDH_like, Pseudomonas putida aldehyde-di	7e-10
cd08273	331	cd08273, MDR8, Medium chain dehydrogenases/reducta	8e-10
cd08268	328	cd08268, MDR2, Medium chain dehydrogenases/reducta	1e-09
PLN02586	360	PLN02586, PLN02586, probable cinnamyl alcohol dehy	1e-09
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	3e-09
cd08267	319	cd08267, MDR1, Medium chain dehydrogenases/reducta	3e-08
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	3e-08
cd08243	320	cd08243, quinone_oxidoreductase_like_1, Quinone ox	9e-08
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	1e-07
PLN02514	357	PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase	1e-07
cd08292	324	cd08292, ETR_like_2, 2-enoyl thioester reductase (	2e-07
cd08290	341	cd08290, ETR, 2-enoyl thioester reductase (ETR)	3e-07
cd05282	323	cd05282, ETR_like, 2-enoyl thioester reductase-lik	4e-07
COG2130	340	COG2130, COG2130, Putative NADP-dependent oxidored	7e-05
cd08274	350	cd08274, MDR9, Medium chain dehydrogenases/reducta	1e-04
cd08291	324	cd08291, ETR_like_1, 2-enoyl thioester reductase (	6e-04
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	7e-04
cd08238	410	cd08238, sorbose_phosphate_red, L-sorbose-1-phosph	7e-04
TIGR02822	329	TIGR02822, adh_fam_2, zinc-binding alcohol dehydro	0.001
cd08250	329	cd08250, Mgc45594_like, Mgc45594 gene product and	0.001
cd05276	323	cd05276, p53_inducible_oxidoreductase, PIG3 p53-in	0.002
PTZ00354	334	PTZ00354, PTZ00354, alcohol dehydrogenase; Provisi	0.002
cd08252	336	cd08252, AL_MDR, Arginate lyase and other MDR fami	0.002

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score =  575 bits (1484), Expect = 0.0
 Identities = 199/372 (53%), Positives = 259/372 (69%), Gaps = 4/372 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I C+AA+A   G+PLVI+EV V PP + EVR++I+ TSLCH+DV FW+ K    +FPRIL
Sbjct: 1   ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRIL 60

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPR 133
           GHEA G+VESVGE V  +  GD V+P F  +C EC  C+S+K N+C           M  
Sbjct: 61  GHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMIN 120

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
           D  SRF    G+ I+HFV  S+FSEYTV+ +  V K++P  P ++ CLLSCGVSTG+GAA
Sbjct: 121 DGKSRFSI-NGKPIYHFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAA 179

Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
           W  A V+ GSTV IFGLG++GLAVAEGAR+ GA+RIIGVD+   KFE  K+FGVTEFVN 
Sbjct: 180 WNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNP 239

Query: 254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 313
           K+  DK V ++I +MT GG DY FEC G    +  A+ C   GWG T++LGV    +  S
Sbjct: 240 KDH-DKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFS 298

Query: 314 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 373
                +L+ G+ L G+LFGG K K+D+P L+++YM KELEL+KF+THE+ F EIN AFDL
Sbjct: 299 THPMNLLN-GRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDL 357

Query: 374 LIKGKCLRCVIW 385
           L+KG+CLRC++ 
Sbjct: 358 LLKGECLRCILH 369

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score =  460 bits (1185), Expect = e-162
 Identities = 184/370 (49%), Positives = 255/370 (68%), Gaps = 6/370 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I+C+AA+A   G+PLVI+E+ V PP ++EVR++++ TS+CH+D+   +      +FP IL
Sbjct: 1   IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGF-KATLFPVIL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G+VESVGE V  +  GD VIP F+  C EC  CRS K NLC  +    S  MP D
Sbjct: 60  GHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMP-D 118

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            TSRF   +G+ I+HF+  S+FS+YTV+D  +V K+DP  P    CLL CG STG GAAW
Sbjct: 119 GTSRFT-CKGKKIYHFLGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAW 177

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
            TA VE GSTV +FGLG++GL+   GA++ GA+RIIGVD+  +KFE  K FG T+F+N K
Sbjct: 178 NTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK 237

Query: 255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 314
           +  DK VS++I +MT GG DY FEC G A L+ EA    + GWG ++V+GV  PG++LS+
Sbjct: 238 DS-DKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGV-PPGAELSI 295

Query: 315 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 374
             F+++  G+   GS FGG K++SD+P L+ +YM+K+ +LD+ +TH + FEEIN  FDL+
Sbjct: 296 RPFQLI-LGRTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLM 354

Query: 375 IKGKCLRCVI 384
             G+C+R VI
Sbjct: 355 KSGECIRTVI 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score =  450 bits (1161), Expect = e-159
 Identities = 176/376 (46%), Positives = 252/376 (67%), Gaps = 15/376 (3%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I C+AA+A   G+PL I+EV V PP + EVR++I+ T +CH+D       D   +FP IL
Sbjct: 1   ITCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVIL 60

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW---- 130
           GHE  G+VESVGE V  V  GD VIP +  +C EC  C+S K NLC     KI       
Sbjct: 61  GHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQ----KIRATQGKG 116

Query: 131 -MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL-DIAHVVKVDPTVPPNRACLLSCGVST 188
            MP D TSRF   +G+ I+HF+  S+FSEYTV+ +I+ V K++P  P ++ CLL CGV+T
Sbjct: 117 LMP-DGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEIS-VAKINPEAPLDKVCLLGCGVTT 173

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G GA   TA VE GSTV +FGLG++GLAV +GA+  GA+RIIG+D+  +KFE+ K+FG T
Sbjct: 174 GYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGAT 233

Query: 249 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
           + VN K+  DK + Q++++MTDGG DY FEC+G   +++ A   C KGWG ++++GV   
Sbjct: 234 DCVNPKDH-DKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAA 292

Query: 309 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 368
           G ++S   F+ L +G++  G+ FGG K++S +P L++ YM  ++++D+F+TH M  +EIN
Sbjct: 293 GQEISTRPFQ-LVTGRVWKGTAFGGWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDEIN 351

Query: 369 SAFDLLIKGKCLRCVI 384
            AFDL+  GK +R V+
Sbjct: 352 EAFDLMHAGKSIRTVV 367

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score =  436 bits (1122), Expect = e-153
 Identities = 195/380 (51%), Positives = 256/380 (67%), Gaps = 9/380 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPA 68
           T GK I C+AA+A  PGEPLV++E+ VDPP   EVR++I+ TS+CH+D++ WK   +   
Sbjct: 4   TQGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQR 63

Query: 69  VFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAF---PF 125
            +PRILGHEA G+VESVGE V+ +  GD VIP F  +C +C  C+  K NLC  +   PF
Sbjct: 64  AYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPF 123

Query: 126 KISPWMPRDQTSRFKDLR-GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC 184
           K    M  D  +RF     G+ I+HF++ S+F+EYTVLD A VVK+DP  P  +  LLSC
Sbjct: 124 KSV--MVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSC 181

Query: 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
           GVSTGVGAAW TANV+ GS+V IFGLG++GLAVAEGAR  GA++IIGVD+  EKFE GK 
Sbjct: 182 GVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241

Query: 245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 304
            G+T+F+N K+  DK V + I +MT GG DY FEC G   +++EA+     GWG T++LG
Sbjct: 242 MGITDFINPKDS-DKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLG 300

Query: 305 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 364
           +      L L   E L  G+ + GS+FG  K KS +P L K+ M   + LD F+THE+ F
Sbjct: 301 IHPTPKMLPLHPME-LFDGRSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPF 359

Query: 365 EEINSAFDLLIKGKCLRCVI 384
           E+IN AF LL  GK LRC++
Sbjct: 360 EKINEAFQLLEDGKALRCLL 379

Length = 381

>gnl|CDD|215442 PLN02827, PLN02827, Alcohol dehydrogenase-like

 Score =  406 bits (1046), Expect = e-141
 Identities = 183/372 (49%), Positives = 254/372 (68%), Gaps = 6/372 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           I CRAA+A   GE LV++EV V PP   E+R++++ TSLC SD++ W+ +   A+FPRI 
Sbjct: 11  ITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQ---ALFPRIF 67

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHEA G+VES+GE V    +GD V+  F  +C  C  C S K N+C     +    M  D
Sbjct: 68  GHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSD 127

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
           Q +RF  ++G+ ++H+ +VSSFSEYTV+     VKVDP  P ++ CLLSCGV+ G+GAAW
Sbjct: 128 QKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAW 186

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
             A+V  GS+VVIFGLG++GL+VA+GA+L GA++IIGVD+  EK E  K FGVT+F+N  
Sbjct: 187 NVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPN 246

Query: 255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 314
           +   + + Q+I  MT GGADY FECVG   +   A   C  GWG T+ LGV +   ++S 
Sbjct: 247 DL-SEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVS- 304

Query: 315 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 374
           + + +  SG+ L GSLFGG K KSD+P L+ +YM+KE+ +D+F+TH + F+EIN AF+L+
Sbjct: 305 AHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELM 364

Query: 375 IKGKCLRCVIWM 386
            +GKCLRCVI M
Sbjct: 365 REGKCLRCVIHM 376

Length = 378

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score =  386 bits (993), Expect = e-133
 Identities = 161/375 (42%), Positives = 228/375 (60%), Gaps = 4/375 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+   P +P  I+E+ V PP +HEVR++I+ T +C SD      K     
Sbjct: 1   TAGKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGK-LVTP 59

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA G+VESVGE V  V  GD VIP F+  C +C  C + + NLC         
Sbjct: 60  FPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQ 119

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            + +D TSRF   +G+ IHHF+  S+FSEYTV+D   V K+D   P  + CL+ CG STG
Sbjct: 120 GLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTG 178

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA V  GST  +FGLG +GL+   G +  GA+RII VD+  +KF   K  G TE
Sbjct: 179 YGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATE 238

Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            +N ++   K + +++ +MTDGG D+ FE +G    ++ A A C +G+G ++++GV    
Sbjct: 239 CINPQDY-KKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSS 297

Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L +G+   G++FGG K+K  +P L+  YM K+  LD  +TH + FE+IN 
Sbjct: 298 QNLSINPMLLL-TGRTWKGAVFGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINE 356

Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  GK +R V+
Sbjct: 357 GFDLLRSGKSIRTVL 371

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score =  384 bits (988), Expect = e-132
 Identities = 167/370 (45%), Positives = 230/370 (62%), Gaps = 6/370 (1%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++ RAA+A   G+PL I+EV +DPP + EV VRI  T +CH+D       D P  FP +L
Sbjct: 1   MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G+VE+VGE V  V  GD VI  F  +C +C  C S K NLC A           D
Sbjct: 60  GHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPD 119

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            T+R     G  ++H++  S+F+EYTV+    +VK+DP  P  +ACLL CGV+TG+GA  
Sbjct: 120 GTTRLSG-NGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVV 178

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
            TA VE G TV +FGLG +GLA  +GA+  GA RII VD+  EK E+ K+FG T FVN K
Sbjct: 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK 238

Query: 255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 314
              D  V + I+++TDGGADY FECVG   ++++A     +  G ++++GV   G ++S 
Sbjct: 239 EVDD--VVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQEIST 295

Query: 315 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 374
             F+ L +G++  GS FGG + +SDIP L+  YM  +L LD+ VTH +  E+IN AFDL+
Sbjct: 296 RPFQ-LVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLM 354

Query: 375 IKGKCLRCVI 384
            +GK +R VI
Sbjct: 355 HEGKSIRSVI 364

Length = 366

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score =  368 bits (947), Expect = e-126
 Identities = 153/369 (41%), Positives = 228/369 (61%), Gaps = 6/369 (1%)

Query: 17  CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           C+AA+    G+PL I+E+ V PP + EVR++++ T +CH+D+     K  P   P ILGH
Sbjct: 1   CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKL-PTPLPVILGH 59

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS-AFPFKISPWMPRDQ 135
           E  G+VES+G  V  +  GD VIP F   C +C  C + + NLCS +        M  D 
Sbjct: 60  EGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMS-DG 118

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
           TSRF   +G+ IHHF+  S+F+EYTV+    + K+DP  P  + CL+ CG STG GAA  
Sbjct: 119 TSRFT-CKGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVN 177

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           TA V  GST  +FGLG +GL+V  G +  GA+RII VD+  +KFE  K+ G TE +N ++
Sbjct: 178 TAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRD 237

Query: 256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 315
             DK + +++ +MTDGG DY FE +G A  +++A    R G G ++V+GV   G++ +L 
Sbjct: 238 -QDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLD 296

Query: 316 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 375
             ++L +G+ + G++FGG K+K  +P L+  Y  K+  LD+ +TH + FEEIN  FDL+ 
Sbjct: 297 PNDLL-TGRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMR 355

Query: 376 KGKCLRCVI 384
            G+ +R ++
Sbjct: 356 SGESIRTIL 364

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|131865 TIGR02818, adh_III_F_hyde, S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

 Score =  365 bits (938), Expect = e-125
 Identities = 171/369 (46%), Positives = 240/369 (65%), Gaps = 3/369 (0%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+A A G+PL I+EV V+ P   EV VRI+ T +CH+D       D   VFP ILGHE
Sbjct: 3   RAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHE 62

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G+VE+VGE V  V  GD VIP + A+C EC  C S K NLC A        +  D TS
Sbjct: 63  GAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTS 122

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           RF    G+ I+H++  S+FSEYTV+    + K++P  P    CLL CGV+TG+GA   TA
Sbjct: 123 RFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTA 181

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            VE G TV +FGLG IGL+V +GAR+  A+RII +D+   KFE+ K+ G T+ VN  +  
Sbjct: 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPND-Y 240

Query: 258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF 317
           DK + ++I+++TDGG DY FEC+G  ++++ A  CC KGWG++I++GV   G ++S   F
Sbjct: 241 DKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPF 300

Query: 318 EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG 377
           + L +G++  GS FGG+K ++++P ++++YM  E+ LD FVTH M  E+IN AFDL+ +G
Sbjct: 301 Q-LVTGRVWRGSAFGGVKGRTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEG 359

Query: 378 KCLRCVIWM 386
           K +R VI  
Sbjct: 360 KSIRTVIHY 368

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols [Cellular processes, Detoxification, Energy metabolism, Fermentation]. Length = 368

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score =  359 bits (925), Expect = e-123
 Identities = 159/368 (43%), Positives = 209/368 (56%), Gaps = 8/368 (2%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+    G+PL I+EV +D P   EV VRI    LCHSD+      D PA  P +LGHE
Sbjct: 2   RAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVT-GDLPAPLPAVLGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             GVVE VG  V GV  GD V+  ++  C  C  C   + NLC      I      D T 
Sbjct: 61  GAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDL-GAGILGGQLPDGTR 119

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           RF    GE +     + +F+EYTV+  A VVK+D  +P +RA LL CGV+TGVGA   TA
Sbjct: 120 RF-TADGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTA 178

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            V  G TV + G G +GL   +GAR+ GA+RII VD + EK E+ +RFG T  VN+    
Sbjct: 179 RVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNA---S 235

Query: 258 DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 316
           +    + + D+TDG GADY FE VG A+ +++A A  RKG G  +V+G+  PG  +SL +
Sbjct: 236 EDDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGETVSLPA 294

Query: 317 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 376
            E+  S K L GSL+G    + DIP LL  Y    L+LD+ VT     +EIN AF  ++ 
Sbjct: 295 LELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLA 354

Query: 377 GKCLRCVI 384
           G+  R VI
Sbjct: 355 GENARGVI 362

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score =  264 bits (678), Expect = 6e-86
 Identities = 127/372 (34%), Positives = 193/372 (51%), Gaps = 10/372 (2%)

Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++  AA+   PG P V+++V +D P   EV VRI+ T +CH+D+   +    P   P +L
Sbjct: 1   MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVV-RDGGLPTPLPAVL 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC-SAFPFKISPWMPR 133
           GHE  GVVE+VG  V G+  GD V+  F A C EC  C S     C + FP   S   P 
Sbjct: 60  GHEGAGVVEAVGSAVTGLKPGDHVVLSF-ASCGECANCLSGHPAYCENFFPLNFSGRRP- 117

Query: 134 DQTSRFKDLRGETIH-HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
           D ++      G  +H HF   SSF+ Y V+   +VVKVD  VP      L CG+ TG GA
Sbjct: 118 DGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGA 177

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
                    GS++ +FG G++GLA    A++ G T II VD++  + E+ K  G T  +N
Sbjct: 178 VLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVIN 237

Query: 253 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 312
            K   ++ +   I ++T GG DY  +  G+ +++++A        G   ++G   PG+++
Sbjct: 238 PK---EEDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEV 293

Query: 313 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 372
           +L   ++L SGK + G + G    +  IP L++ Y   +   DK VT    FE+IN A  
Sbjct: 294 TLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFPFDKLVTF-YPFEDINQAIA 352

Query: 373 LLIKGKCLRCVI 384
               GK ++ V+
Sbjct: 353 DSESGKVIKPVL 364

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score =  258 bits (662), Expect = 2e-83
 Identities = 138/375 (36%), Positives = 193/375 (51%), Gaps = 14/375 (3%)

Query: 18  RAAIATAPG--------EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           RAA+    G         PLVI+EV +DPP   EV V+I    LCHSD++     D P  
Sbjct: 2   RAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVIN-GDRPRP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHEA GVV  VGE V  +  GD V+  F+  C  C  C   +  LC         
Sbjct: 61  LPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGA 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                   R + LRG  I+H + VS+F+EY V+    VVK+D  VP   A L  C V TG
Sbjct: 121 GTLLSGGRRLR-LRGGEINHHLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           VGA   TA V  G +V + GLG +GL+   GA   GA++++ VD+  +K  + +  G T 
Sbjct: 180 VGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA 239

Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN+   GD +  + + ++T GG DY FE  G    ++ AY   R+G G T+  G+  P 
Sbjct: 240 TVNA---GDPNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPE 295

Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
           ++LS+ +  ++   + L GS  G    + DIP  L  Y+   L +DK +TH +  +EIN 
Sbjct: 296 ARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINE 355

Query: 370 AFDLLIKGKCLRCVI 384
            FD L  G+ +R VI
Sbjct: 356 GFDRLAAGEAVRQVI 370

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score =  256 bits (655), Expect = 2e-82
 Identities = 131/374 (35%), Positives = 202/374 (54%), Gaps = 16/374 (4%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK--DFPA-VFPRIL 74
           +AA+   PG+P  ++E+ +D P + EV V+++ + LCHSD     +   D P   +P + 
Sbjct: 3   KAAVLWGPGQPWEVEEIELDDPKAGEVLVKLVASGLCHSD---EHLVTGDLPMPRYPILG 59

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  GVV  VG  V GV  GD V+  F+  C  C  C +   NLC      ++     D
Sbjct: 60  GHEGAGVVTKVGPGVTGVKPGDHVVLSFIPACGRCRWCSTGLQNLCDLGAALLTGSQISD 119

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
            T RF    G+ +     + +FSEYTV+  A VVK+D  +P ++ACL+ CGV TG G+A 
Sbjct: 120 GTYRFH-ADGQDVGQMCLLGTFSEYTVVPEASVVKIDDDIPLDKACLVGCGVPTGWGSAV 178

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
             A+V  G TVV+ G+G +G+   +GA + GA ++I VD +  K E   +FG T    S 
Sbjct: 179 NIADVRPGDTVVVMGIGGVGINAVQGAAVAGARKVIAVDPVEFKREQALKFGATHAFASM 238

Query: 255 NCGDKSVSQIIIDMTDG-GADYCFECVGLA--SLVQEAYACCRKGWGKTIVLGVDQPG-S 310
               +   Q++ ++T+G GAD     VG      + EA +  RKG G+ +V G+      
Sbjct: 239 ----EEAVQLVRELTNGQGADKTIITVGEVDGEHIAEALSATRKG-GRVVVTGLGPMADV 293

Query: 311 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
            + ++ FE+    K L G+LFGG   ++DIP LL+ Y   +L+LD+ +T     ++IN  
Sbjct: 294 DVKVNLFELTLLQKELQGTLFGGANPRADIPRLLELYRAGKLKLDELITRTYTLDQINEG 353

Query: 371 FDLLIKGKCLRCVI 384
           +  ++ GK +R VI
Sbjct: 354 YQDMLDGKNIRGVI 367

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase

 Score =  213 bits (544), Expect = 5e-66
 Identities = 123/368 (33%), Positives = 182/368 (49%), Gaps = 15/368 (4%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           R  IA + G P+ ++ ++V  P   EV V I    +CH+D+ + +       FP +LGHE
Sbjct: 3   RGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHY-REGGINDEFPFLLGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
           A GVVE+VGE V  V  GD V+ ++ A C +C  C+  +   C         +   + T 
Sbjct: 62  AAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYC---------FDTHNATQ 112

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +     G  +   + + +F+E T++      KVDP   P  A LL CGV  G+GAA  T 
Sbjct: 113 KMTLTDGTELSPALGIGAFAEKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTG 172

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            V+ G +V + G G +G A   GA L GA++II VD+   K E  + FG T  VNS   G
Sbjct: 173 GVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS--G 230

Query: 258 DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 316
              V + I  +T G GAD   + VG     ++A+   R   G  +++GV  P   L L  
Sbjct: 231 TDPV-EAIRALTGGFGADVVIDAVGRPETYKQAFY-ARDLAGTVVLVGVPTPDMTLELPL 288

Query: 317 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 376
            +V   G  L  S +G    + D P+L+  Y+   L LD FVT  +  +++  AFD +  
Sbjct: 289 LDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHA 348

Query: 377 GKCLRCVI 384
           G  LR V+
Sbjct: 349 GDVLRSVV 356

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione [Cellular processes, Detoxification]. Length = 358

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score =  188 bits (480), Expect = 2e-56
 Identities = 113/373 (30%), Positives = 177/373 (47%), Gaps = 14/373 (3%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+   P  PL I+E+ V  P   E+ +R+    +CHSD+   K  + P   P +LGHE
Sbjct: 2   KAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLK-GELPFPPPFVLGHE 60

Query: 78  AIGVVESVGENVDGVV---EGDVVIPHFLADCTECVGCRSKKGNLC-SAFPFKISPWMPR 133
             G V  VG NV+       GD V+  F+  C +C  C   K NLC   F +        
Sbjct: 61  ISGEVVEVGPNVENPYGLSVGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLY 120

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
           D T+R   L G  ++ + S+   +EY V+    +  +  ++    + +L C   T  GA 
Sbjct: 121 DGTTRLFRLDGGPVYMY-SMGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGAL 179

Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
              A+V  G TV + G+G +G +  + A+  GA+ II VDV  EK    K  G T  VN+
Sbjct: 180 KHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHTVNA 239

Query: 254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 312
               D      I ++T G G D   E +G     + A    R G G+ +V+G+   G+  
Sbjct: 240 AK-ED--AVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATA 295

Query: 313 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 372
            +    ++  G  ++GS   G + + D+P L+      +L+ +  VTH+ K EEIN A++
Sbjct: 296 EIPITRLVRRGIKIIGSY--GARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYE 353

Query: 373 LLIKGKC-LRCVI 384
            L KG    R ++
Sbjct: 354 NLRKGLIHGRAIV 366

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score =  179 bits (457), Expect = 3e-53
 Identities = 97/373 (26%), Positives = 154/373 (41%), Gaps = 28/373 (7%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV-TFWKMKDFPAVFPRILGH 76
           +AA+    G  + ++E     P   +V +R+  T +C SD+  +   + F      ILGH
Sbjct: 2   KAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGH 61

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G V  VG  V G   GD V+      C  C  CR+ + NLC    F     +     
Sbjct: 62  EFVGEVVEVGV-VRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGL----- 115

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                + G           F+EY  +     +   P      A  L+  ++T        
Sbjct: 116 --GGGIDG----------GFAEYVRVPADFNLAKLPDGIDEEAAALTEPLATAYHGHAER 163

Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
           A V  G TVV+ G G IGL     A+L GA+ +I VD   E+ E+ K  G  + V +   
Sbjct: 164 AAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNP-- 221

Query: 257 GDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 315
            +      I+++T G GAD   E VG    + +A    R G G  +V+GV   G  + L 
Sbjct: 222 SEDDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVY-GGEDIPLP 279

Query: 316 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 375
           +  V+     L GSL      + D    L      +++ +K +TH +  ++   A++L  
Sbjct: 280 AGLVVSKELTLRGSLRPS--GREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFA 337

Query: 376 KGK--CLRCVIWM 386
             K   ++ V+  
Sbjct: 338 DRKEEAIKVVLKP 350

Length = 350

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score =  177 bits (450), Expect = 4e-53
 Identities = 80/304 (26%), Positives = 119/304 (39%), Gaps = 36/304 (11%)

Query: 43  EVRVRIICTSLCHSDVTFWK-MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
           EV VR+    LC +D+   +     P   P ILGHE  GVV  VG  V GV  GD V+  
Sbjct: 1   EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVL 60

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
               C  C  CR                                 I        F+EY V
Sbjct: 61  PNLGCGTCELCRELCPGGG--------------------------ILGEGLDGGFAEYVV 94

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 221
           +   ++V +   +    A LL   ++T   A  R   ++ G TV++ G G +GL  A+ A
Sbjct: 95  VPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGGVGLLAAQLA 154

Query: 222 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG 281
           +  GA R+I  D   EK E+ K  G    ++ K   ++ + + +     GGAD   + VG
Sbjct: 155 KAAGA-RVIVTDRSDEKLELAKELGADHVIDYK---EEDLEEELRLTGGGGADVVIDAVG 210

Query: 282 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIP 341
               + +A    R G G+ +V+G    G         +L     ++GS  G  +   D  
Sbjct: 211 GPETLAQALRLLRPG-GRIVVVGGT-SGGPPLDDLRRLLFKELTIIGSTGGTRE---DFE 265

Query: 342 ILLK 345
             L 
Sbjct: 266 EALD 269

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score =  170 bits (434), Expect = 7e-50
 Identities = 100/367 (27%), Positives = 161/367 (43%), Gaps = 41/367 (11%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPR 72
            +  +AA+    G+PL I+EV V  P   EV +++    +CH+D+   K  D+P    P 
Sbjct: 1   MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAK-GDWPVPKLPL 59

Query: 73  ILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           I GHE +G V  VGE V G+  GD V +   +  C EC  CRS   NLC           
Sbjct: 60  IPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLC----------- 108

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                   + + G T         ++EY V+   +VVK+   +    A  L C   T   
Sbjct: 109 ------PNQKITGYTTD-----GGYAEYVVVPARYVVKIPEGLDLAEAAPLLCAGITTYR 157

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
           A  + ANV+ G  V + G G +G    + A+  GA  +I +    EK E+ K+ G    +
Sbjct: 158 AL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVI 215

Query: 252 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 311
           NS    D    + +       AD   + VG  + ++ +    R+G G  +++G+   G  
Sbjct: 216 NSS---DSDALEAV----KEIADAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPI 266

Query: 312 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 371
             L +F ++     ++GSL G      D+   L      E ++   +   +  +EIN A+
Sbjct: 267 PLLPAFLLILKEISIVGSLVGTRA---DLEEALD--FAAEGKIKPEILETIPLDEINEAY 321

Query: 372 DLLIKGK 378
           + + KGK
Sbjct: 322 ERMEKGK 328

Length = 339

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score =  156 bits (398), Expect = 1e-44
 Identities = 102/372 (27%), Positives = 166/372 (44%), Gaps = 45/372 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A +   PGE L ++EV V  P   EV +++    +C +D+  ++  +F A  P + GHE
Sbjct: 2   KALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYE-GEFGAAPPLVPGHE 59

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             GVV +VG  V G   GD   V P+    C EC  CR  + NLC               
Sbjct: 60  FAGVVVAVGSKVTGFKVGDRVAVDPNIY--CGECFYCRRGRPNLCENL------------ 105

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
                   G T +       F+EY V+    V K+   +    A L   LSC V      
Sbjct: 106 -----TAVGVTRN-----GGFAEYVVVPAKQVYKIPDNLSFEEAALAEPLSCAVH----- 150

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
                 ++ G +V++FG G IGL +A+  +L GA+R+   +   EK E+ K+ G TE V+
Sbjct: 151 GLDLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVD 210

Query: 253 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 312
                 +   +   +    G D   E  G+   +++A    R+G G  +V GV  P +++
Sbjct: 211 ----PSREDPEAQKEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARV 265

Query: 313 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 372
           S+S FE+      ++GS F           LL+     ++++   V+H +  EE+  A +
Sbjct: 266 SISPFEIFQKELTIIGS-FINPYTFPRAIALLES---GKIDVKGLVSHRLPLEEVPEALE 321

Query: 373 LLIKGKCLRCVI 384
            +  G  L+ V+
Sbjct: 322 GMRSGGALKVVV 333

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score =  157 bits (399), Expect = 1e-44
 Identities = 104/379 (27%), Positives = 152/379 (40%), Gaps = 31/379 (8%)

Query: 17  CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
            RAA+ T PG+PL I EV +       V VR+    +C SDV     +      P ILGH
Sbjct: 1   ARAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGH 60

Query: 77  EAIGVVESVGENVD------GVVEGD-VVIPHFLADCTECVGCRSKKGNLC-SAFPFKIS 128
           E +G V ++G  V        +  GD V        C  C  C       C +   +   
Sbjct: 61  EGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAP-CGRCYRCLVGDPTKCENRKKYGHE 119

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHVVKVDPTVPPNRACLLSCGVS 187
                        L G           ++E+  L     +V+V   VP   A   +C ++
Sbjct: 120 ASCDDPH------LSG----------GYAEHIYLPPGTAIVRVPDNVPDEVAAPANCALA 163

Query: 188 TGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           T V AA   A  V  G TVV+ G G +GL     A+L GA R+I +D   E+ E+ + FG
Sbjct: 164 T-VLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFG 222

Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
               ++     D     I+ D+T G GAD   E  G  + V E     R+G G  +++G 
Sbjct: 223 ADATIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGS 281

Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
             P   + L    ++     ++G               L+R  D+     + VTH    E
Sbjct: 282 VAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFP-FAELVTHRYPLE 340

Query: 366 EINSAFDLLIKGKCLRCVI 384
           +IN A +L   G  L+ VI
Sbjct: 341 DINEALELAESGTALKVVI 359

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score =  153 bits (390), Expect = 2e-43
 Identities = 97/377 (25%), Positives = 159/377 (42%), Gaps = 46/377 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+   P + + ++EV V  P   EV V++    +C +DV   +        PRILGHE
Sbjct: 2   KAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G +  VG+ V G   GD V       C EC  C     N+C                 
Sbjct: 61  IAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMC----------------- 103

Query: 138 RFKDLRGETIHHFVSVSSFSEYTV-----LDIAHVVKVDPTVPPNRACL---LSCGVSTG 189
              + +            F+EY       +    V+K+   V    A L   L+C +   
Sbjct: 104 --PNYKKFGNL---YDGGFAEYVRVPAWAVKRGGVLKLPDNVSFEEAALVEPLACCI--- 155

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
              A R A ++ G TV++ G G IGL  A  A+  GA ++I  D+   + E  K+ G   
Sbjct: 156 --NAQRKAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADY 213

Query: 250 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
            +++    ++ + + + ++TDG GAD      G      +A    RKG G+ +  G    
Sbjct: 214 TIDA---AEEDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPK 269

Query: 309 GSQLSLSSFEVLHSGKILMGSLFGGLKAKS-DIPILLKRYMDKELELDKFVTHEMKFEEI 367
           GS +++    ++H  +I   ++ G   A   D    L+     ++++   +TH    E+I
Sbjct: 270 GSTVNI-DPNLIHYREI---TITGSYAASPEDYKEALELIASGKIDVKDLITHRFPLEDI 325

Query: 368 NSAFDLLIKGKCLRCVI 384
             AF+L   GK L+ VI
Sbjct: 326 EEAFELAADGKSLKIVI 342

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score =  153 bits (388), Expect = 4e-43
 Identities = 102/354 (28%), Positives = 145/354 (40%), Gaps = 36/354 (10%)

Query: 26  GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVES 84
              LV++EV V  P   EV V++    +CHSD+             P  LGHE  G V  
Sbjct: 11  KGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVE 70

Query: 85  VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG 144
           VG  V     GD V    +  C  C  CR  +GNLC             +Q      + G
Sbjct: 71  VGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLC------------LNQGMPGLGIDG 118

Query: 145 ETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGST 204
                      F+EY V+    +V V   VP  +A + +  V T   A  R   V+ G T
Sbjct: 119 ----------GFAEYIVVPARALVPVPDGVPFAQAAVATDAVLTPYHAVVRAGEVKPGET 168

Query: 205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQI 264
           V++ GLG +GL   + A+  GA  +I VD+  EK E+ K  G  E +NS    D S    
Sbjct: 169 VLVIGLGGLGLNAVQIAKAMGAA-VIAVDIKEEKLELAKELGADEVLNSL---DDSPKDK 224

Query: 265 IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK 324
                 GG D  F+ VG     ++A    + G G+ +V+G+ +    + LS         
Sbjct: 225 KAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGRDKLTVDLSDLIARE--L 281

Query: 325 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 378
            ++GS FGG     D+P +L      +L            +EI    + L KGK
Sbjct: 282 RIIGS-FGGT--PEDLPEVLDLIAKGKL---DPQVETRPLDEIPEVLERLHKGK 329

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score =  142 bits (360), Expect = 4e-39
 Identities = 96/371 (25%), Positives = 168/371 (45%), Gaps = 47/371 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A + T PG+ L  +++    P   EV V++    +C SD+  + +       P +LGHE
Sbjct: 2   KALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRY-LGTGAYHPPLVLGHE 59

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G VE VG  VD +  GD   V P  L  C +C  C+  + +LCS +            
Sbjct: 60  FSGTVEEVGSGVDDLAVGDRVAVNP--LLPCGKCEYCKKGEYSLCSNY------------ 105

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                D  G          +F+EY  +   +++K+   V    A ++    +  + A   
Sbjct: 106 -----DYIGSRRD-----GAFAEYVSVPARNLIKIPDHVDYEEAAMIE-PAAVALHAVRL 154

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
            A + +G TVV+ G G+IGL   +  ++ GA R+I VD+  EK  + +  G  + +N K 
Sbjct: 155 -AGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE 213

Query: 256 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 314
              + V     ++T+G GAD   E  G  + +++A A  R G GK +++G+      LS 
Sbjct: 214 EDVEKVR----ELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSE 268

Query: 315 SSFE-VLHSGKILMGS------LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 367
            +FE +L     + GS       F G + ++ + +L    +     ++  +TH +  E+ 
Sbjct: 269 EAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIK----VEPLITHRLPLEDG 324

Query: 368 NSAFDLLIKGK 378
            +AF+ L   +
Sbjct: 325 PAAFERLADRE 335

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score =  141 bits (359), Expect = 4e-39
 Identities = 101/363 (27%), Positives = 170/363 (46%), Gaps = 43/363 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A +   PG  L + ++    P + EV VR+    +C SD+  +  ++  A +PRILGHE
Sbjct: 2   KALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G V  VGE V G+  GD  VV P+    C EC  CR  + N C      +        
Sbjct: 61  LSGEVVEVGEGVAGLKVGDRVVVDPYI--SCGECYACRKGRPNCCE----NLQ------- 107

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                 + G  +H       F+EY V+    ++  +  +  ++A L+   ++ G  A  R
Sbjct: 108 ------VLG--VH---RDGGFAEYIVVPADALLVPE-GLSLDQAALVEP-LAIGAHAVRR 154

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
            A V  G TV++ G G IGL V + A+  GA R+I VD+  E+ E  +  G  + +N   
Sbjct: 155 -AGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINV-- 210

Query: 256 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSL 314
            GD+ V+  + ++TDG GAD   +  G  + ++EA      G G+ +++G+ +       
Sbjct: 211 -GDEDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSKGPVTFPD 268

Query: 315 SSFEVLHSGKI-LMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 373
             F   H  ++ ++GS       + D P ++      +++ +  +TH   FE++  AFDL
Sbjct: 269 PEF---HKKELTILGSR---NATREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDL 322

Query: 374 LIK 376
              
Sbjct: 323 WEA 325

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score =  141 bits (359), Expect = 7e-39
 Identities = 84/281 (29%), Positives = 117/281 (41%), Gaps = 27/281 (9%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           RAA+    GEPL I EV    P    V V +    +C SD   W+  D     P + GHE
Sbjct: 2   RAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             GVV  VGE+V     GD V   F+  C  C  CR+   N+C              Q  
Sbjct: 62  FAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVC------------EHQ-- 107

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHV--VKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                       F    SF+EY  +  A V  V++   V    A  L C  +T   A   
Sbjct: 108 --------VQPGFTHPGSFAEYVAVPRADVNLVRLPDDVDFVTAAGLGCRFATAFRALVH 159

Query: 196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
            A V+ G  V + G G +GL+    A   GA R+I VD+  +K E+ +  G    VN+  
Sbjct: 160 QARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNAS- 217

Query: 256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 296
              + V+  + D+T GGA    + +G+    + + A  RK 
Sbjct: 218 -EVEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR 257

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  140 bits (356), Expect = 2e-38
 Identities = 110/385 (28%), Positives = 161/385 (41%), Gaps = 63/385 (16%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM---KDFPAVFPRILG 75
           AA+   PG+ L ++E  +  P   EV VR+    +C SDV ++K     DF    P +LG
Sbjct: 1   AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLG 59

Query: 76  HEAIGVVESVGENVDGVVEGDVV-----IPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           HE+ G V +VG  V  +  GD V     +P     C  C  C+S + NLC    F  +P 
Sbjct: 60  HESAGTVVAVGSGVTHLKVGDRVAIEPGVP-----CRTCEFCKSGRYNLCPDMRFAATP- 113

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVS 187
            P D T                      Y         K+   V      L   LS GV 
Sbjct: 114 -PVDGT-------------------LCRYVNHPADFCHKLPDNVSLEEGALVEPLSVGV- 152

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
                A R A V  G TV++FG G IGL  A  A+  GAT+++  D+   + E  K  G 
Sbjct: 153 ----HACRRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGA 208

Query: 248 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEA-YACCRKGWGKTIVL-G 304
           T  VN +       ++ I ++  G G D   EC G  S +Q A YA    G   T+VL G
Sbjct: 209 THTVNVRTEDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGG---TVVLVG 265

Query: 305 VDQPGSQL---SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHE 361
           + +P   L   + S  E+          + G  +  +  P  ++     ++++   +TH 
Sbjct: 266 MGKPEVTLPLSAASLREI---------DIRGVFRYANTYPTAIELLASGKVDVKPLITHR 316

Query: 362 MKFEEINSAFDLLIKGK--CLRCVI 384
              E+   AF+   KGK   ++ VI
Sbjct: 317 FPLEDAVEAFETAAKGKKGVIKVVI 341

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score =  139 bits (352), Expect = 5e-38
 Identities = 94/349 (26%), Positives = 144/349 (41%), Gaps = 33/349 (9%)

Query: 41  SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIP 100
            H+  VR+  TS+C SD+  ++     A    ILGHE +G V  VG +V  +  GD V  
Sbjct: 25  PHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPGDRVSV 84

Query: 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT 160
             +  C  C  CR      C    +               D               +EY 
Sbjct: 85  PCITFCGRCRFCRRGYHAHCENGLWGWKL-------GNRID------------GGQAEYV 125

Query: 161 VLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 218
            +  A  ++ K+   +P   A +LS  + TG   A   A ++ GSTV + G G +GL   
Sbjct: 126 RVPYADMNLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAV 184

Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF 277
            GARL GA RII VD   E+ ++ K  G T+ +N KN     + + I+++T G G D   
Sbjct: 185 AGARLLGAARIIAVDSNPERLDLAKEAGATDIINPKNG---DIVEQILELTGGRGVDCVI 241

Query: 278 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAK 337
           E VG     ++A    R G G    +GV            E             G +  +
Sbjct: 242 EAVGFEETFEQAVKVVRPG-GTIANVGVYG-KPDPLPLLGEWFGKNLTFKT---GLVPVR 296

Query: 338 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVI 384
           + +P LL    + +++  K +TH    ++I  A+ L       C++ VI
Sbjct: 297 ARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVI 345

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score =  138 bits (351), Expect = 6e-38
 Identities = 91/358 (25%), Positives = 152/358 (42%), Gaps = 34/358 (9%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL-GHEAIGVVESVGE 87
           + + E  V  P   EV +R+  + LC SD+ ++        +  ++ GHE  GVV +VG 
Sbjct: 12  VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGP 71

Query: 88  NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
            V     GD V+ +    C  C  CR     LC++                  +  G   
Sbjct: 72  GVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYG-----------WNRDG--- 117

Query: 148 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 207
                    +EY ++    ++ +   +      LL CG+ T    A R   V    TV++
Sbjct: 118 -------GHAEYMLVPEKTLIPLPDDLSFADGALLLCGIGTA-YHALRRVGVSGRDTVLV 169

Query: 208 FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID 267
            G G +GL     AR  GA  +IGVD   E+ E+ K  G    +NS   G   V +I   
Sbjct: 170 VGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINS---GQDDVQEIREL 226

Query: 268 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS-SFEVLHSGKIL 326
            +  GAD   EC G  +  + A    R  WG+ +++G    G +L++  S +++   + L
Sbjct: 227 TSGAGADVAIECSGNTAARRLALEAVRP-WGRLVLVGE---GGELTIEVSNDLIRKQRTL 282

Query: 327 MGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 384
           +GS +  +    +    L R+   +LE+D+ VTH    ++   A+ L  +G+  + V 
Sbjct: 283 IGSWYFSVPDMEECAEFLARH---KLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVF 337

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score =  135 bits (342), Expect = 2e-36
 Identities = 104/374 (27%), Positives = 154/374 (41%), Gaps = 55/374 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDV-TFWKMKDFPAVFP-RIL 74
           +A      G+   I++ I    PN  +  VR    + C SDV T W     P      IL
Sbjct: 2   KAFAMLGIGKVGWIEKPIPVCGPN--DAIVRPTAVAPCTSDVHTVWG--GAPGERHGMIL 57

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVIPHFLAD--CTECV-GCRSKKGNLCSAFPFKISPW 130
           GHEA+GVVE VG  V     GD V++P    D        G  S+ G +   + F     
Sbjct: 58  GHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKF----- 112

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYT-VLDI-AHVVKVDPTVPPNRACLLSCGVST 188
                 S FKD              F+EY  V D  A++  +   +   +A +L   +ST
Sbjct: 113 ------SNFKD------------GVFAEYFHVNDADANLAPLPDGLTDEQAVMLPDMMST 154

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
           G   A   AN+++G TV +FG+G +GL    GARL GA RII V     + E+ K +G T
Sbjct: 155 GFHGAEL-ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGAT 213

Query: 249 EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 307
           + V+ KN     V + I+ +T G G D      G     ++A    + G G    +    
Sbjct: 214 DIVDYKNG---DVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYG 269

Query: 308 PGSQL--SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD----KELELDKFVTH- 360
               L      + V    K + G L  G + +      ++R         ++  K +TH 
Sbjct: 270 EDDYLPIPREEWGVGMGHKTINGGLCPGGRLR------MERLASLIEYGRVDPSKLLTHH 323

Query: 361 EMKFEEINSAFDLL 374
              F++I  A  L+
Sbjct: 324 FFGFDDIEEALMLM 337

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score =  132 bits (335), Expect = 2e-35
 Identities = 95/383 (24%), Positives = 145/383 (37%), Gaps = 52/383 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW------------KMKD 65
           +AA    PG+PL   E+    P   EV V++    +CHSD+  W             + D
Sbjct: 2   KAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDD 61

Query: 66  FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 125
                P +LGHE +G V +VG +   V  GD V+ +    C EC  C +   NLC+    
Sbjct: 62  RGVKLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCA---- 117

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                         K               ++EY ++  +  +     + P  A  L+C 
Sbjct: 118 --------------KGRALGIFQD----GGYAEYVIVPHSRYLVDPGGLDPALAATLACS 159

Query: 186 VSTGVGAAWRTANVEVGST-VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
             T   A  +     V    VVI G G +GL      +  G   II VD+   K E  K 
Sbjct: 160 GLTAYSAV-KKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA 218

Query: 245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 304
            G    VN  +       + II    GG D   + V  ++    A+    KG GK +++G
Sbjct: 219 AGADVVVNGSDPDAA---KRIIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVG 274

Query: 305 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD--KELELDKFVTHEM 362
           +   G + +L    +      + GS  G L+        L+  +   K  +L      E 
Sbjct: 275 L--FGGEATLPLPLLPLRALTIQGSYVGSLEE-------LRELVALAKAGKLKPIPLTER 325

Query: 363 KFEEINSAFDLLIKGKCL-RCVI 384
              ++N A D L  GK + R V+
Sbjct: 326 PLSDVNDALDDLKAGKVVGRAVL 348

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score =  132 bits (334), Expect = 2e-35
 Identities = 98/376 (26%), Positives = 158/376 (42%), Gaps = 48/376 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +AA     G+PL +++V V  P   +V VR+    +CHSD+           P   P  L
Sbjct: 2   KAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE  G VE VG  VDG+ EGD V+ H    C  C  CR  + N C              
Sbjct: 62  GHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCEN------------ 109

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
             +RF    G           F+EY ++    +VK+   + P  A  L+    T   A  
Sbjct: 110 --ARF---PGIGTD-----GGFAEYLLVPSRRLVKLPRGLDPVEAAPLADAGLTAYHAVK 159

Query: 195 RTANV-EVGSTVVIF---GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           +     + GSTVV+    GLG I + +    R      +I VD   E  ++ +R G    
Sbjct: 160 KALPYLDPGSTVVVIGVGGLGHIAVQI---LRALTPATVIAVDRSEEALKLAERLGADHV 216

Query: 251 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
           +N        V + + ++T G GAD   + VG    +  A     KG G+ +++G    G
Sbjct: 217 LN----ASDDVVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGY---G 268

Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
               L + +++ +   ++GSL+G     +++  ++      ++   K    +   E+ N 
Sbjct: 269 GHGRLPTSDLVPTEISVIGSLWGTR---AELVEVVALAESGKV---KVEITKFPLEDANE 322

Query: 370 AFDLLIKGKCL-RCVI 384
           A D L +G+   R V+
Sbjct: 323 ALDRLREGRVTGRAVL 338

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score =  131 bits (333), Expect = 6e-35
 Identities = 103/402 (25%), Positives = 164/402 (40%), Gaps = 81/402 (20%)

Query: 30  VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP-RILGHEAIGVVESVGEN 88
           V D  I DP    +  VR+  T++C SD+  +     P +    ILGHE +GVVE VG  
Sbjct: 17  VPDPKIEDP---TDAIVRVTATAICGSDLHLY-HGYIPGMKKGDILGHEFMGVVEEVGPE 72

Query: 89  VDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
           V  +  GD VV+P  +A C EC  C+    + C             D T+   ++     
Sbjct: 73  VRNLKVGDRVVVPFTIA-CGECFYCKRGLYSQC-------------DNTNPSAEMAKLYG 118

Query: 148 HHFVSVSSFS-----------EYTVLDIAHV--VKVDPTVPPNRACLLSCGVSTGVGAAW 194
           H    +  +S           EY  +  A V   K+   +   +A  LS  + TG  AA 
Sbjct: 119 HAGAGIFGYSHLTGGYAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA- 177

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
             A V+ G TV ++G G +GL  A  A+L GA R+I +D + E+ E+ +     E +N +
Sbjct: 178 ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAETINFE 237

Query: 255 NCGDKSVSQIIIDMTDG-GADYCFECVGL---------------------ASLVQEAYAC 292
                 V + + ++T G G D C + VG+                        ++EA   
Sbjct: 238 EV--DDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQA 295

Query: 293 CRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF--------GGLKAKSDIPILL 344
            RKG G   ++GV                  K  +G+          G    +  +P LL
Sbjct: 296 VRKG-GTVSIIGVYGGTVN------------KFPIGAAMNKGLTLRMGQTHVQRYLPRLL 342

Query: 345 KRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVI 384
           +     EL+    +TH +  E+   A+ +  K +  C++ V+
Sbjct: 343 ELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVL 384

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176257 cd08297, CAD3, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  129 bits (328), Expect = 2e-34
 Identities = 101/378 (26%), Positives = 160/378 (42%), Gaps = 62/378 (16%)

Query: 17  CRAAIATAPGE-PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRI 73
            +AA+    GE P  + +V V  P   EV V++  + +CH+D+      D+P     P I
Sbjct: 1   MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALG-DWPVKPKLPLI 59

Query: 74  LGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE  GVV +VG  V G+  GD V +      C +C  CR+    LC            
Sbjct: 60  GGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPN---------- 109

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
           +  +    D             +F+EY + D  +V  +   +   +A  L C   T V  
Sbjct: 110 QKNSGYTVD------------GTFAEYAIADARYVTPIPDGLSFEQAAPLLCAGVT-VYK 156

Query: 193 AWRTANVEVGSTVVIFG----LGSIGL--AVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           A + A ++ G  VVI G    LG +G+  A A G       R+I +DV  EK E+ K  G
Sbjct: 157 ALKKAGLKPGDWVVISGAGGGLGHLGVQYAKAMGL------RVIAIDVGDEKLELAKELG 210

Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
              FV+ K        + + ++T G GA         A+  ++A    R G G  + +G+
Sbjct: 211 ADAFVDFK---KSDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGL 266

Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELEL---DKFVTH-- 360
             PG  + L  F+++  G  ++GSL G  +            + + LE     K   H  
Sbjct: 267 -PPGGFIPLDPFDLVLRGITIVGSLVGTRQD-----------LQEALEFAARGKVKPHIQ 314

Query: 361 EMKFEEINSAFDLLIKGK 378
            +  E++N  F+ + +GK
Sbjct: 315 VVPLEDLNEVFEKMEEGK 332

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score =  126 bits (319), Expect = 2e-33
 Identities = 106/373 (28%), Positives = 165/373 (44%), Gaps = 49/373 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGH 76
           +AAI   P +PL I+EV    P   EV +++    +C+ D+ FWK   FP   +P ILGH
Sbjct: 2   KAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWK-GFFPRGKYPLILGH 60

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G VE VGE V+    GD VI ++   C +C  C S + NLC                
Sbjct: 61  EIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLC---------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                 R    +       F+EY  +    +VK+   V    A L +C V T V A  + 
Sbjct: 105 ------RNRAEYGEEVDGGFAEYVKVPERSLVKLPDNVSDESAALAACVVGTAVHAL-KR 157

Query: 197 ANVEVGSTVVI-FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           A V+ G TV++    G +G+   + A+  GA R+I V    EK +I K  G    ++   
Sbjct: 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGSK 216

Query: 256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 315
             +            GGAD   E VG  ++ +   +   KG G+ +++G   P       
Sbjct: 217 FSEDVKKL-------GGADVVIELVGSPTIEESLRS-LNKG-GRLVLIGNVTP------- 260

Query: 316 SFEVLHSGKILMG--SLFGGLKA-KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 372
               L  G +++    + G + A K+D+   LK  + KE ++   +   +  E+IN A +
Sbjct: 261 DPAPLRPGLLILKEIRIIGSISATKADVEEALK--LVKEGKIKPVIDRVVSLEDINEALE 318

Query: 373 LLIKGKCL-RCVI 384
            L  GK + R V+
Sbjct: 319 DLKSGKVVGRIVL 331

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score =  123 bits (310), Expect = 8e-32
 Identities = 86/373 (23%), Positives = 140/373 (37%), Gaps = 69/373 (18%)

Query: 31  IDEVIVDPPNSHEVRVRIICTSLCHSDV-------TFWKMKDFP---------AVFPRIL 74
           ++EV   P    EV++++    +C SD+        F      P            P  L
Sbjct: 14  VEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIF-----IPTEGHPHLTGETAPVTL 68

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  GVV  VG  V G   GD  VV P     C  C  C+    NLC +  F       
Sbjct: 69  GHEFSGVVVEVGSGVTGFKVGDRVVVEPTI--KCGTCGACKRGLYNLCDSLGF------- 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSS--FSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVS 187
                             +      F+EY V+   HV K+   VP   A L   L+    
Sbjct: 120 ----------------IGLGGGGGGFAEYVVVPAYHVHKLPDNVPLEEAALVEPLAVAWH 163

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
                A R +  + G T ++ G G IGL      +  GA++II  +    + E+ +  G 
Sbjct: 164 -----AVRRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA 218

Query: 248 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
           T  ++        V   +  +T G G D  F+C G+ + +  A    R   G  + + + 
Sbjct: 219 TIVLDPTEVD---VVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAI- 273

Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
                +S +  +++   K L GS+      + D   ++      +++ +  +T  +  E+
Sbjct: 274 -WEKPISFNPNDLVLKEKTLTGSI---CYTREDFEEVIDLLASGKIDAEPLITSRIPLED 329

Query: 367 I-NSAFDLLIKGK 378
           I    F+ LI  K
Sbjct: 330 IVEKGFEELINDK 342

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score =  120 bits (303), Expect = 5e-31
 Identities = 100/338 (29%), Positives = 146/338 (43%), Gaps = 50/338 (14%)

Query: 46  VRIICTSLCHSDVTFWKMKDFPAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLA 104
           V+++ T++C +D+   K  D P V P RILGHE +GVVE VG  V     GD V+   ++
Sbjct: 30  VKMLKTTICGTDLHILK-GDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCIS 88

Query: 105 DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH----HFVSV--SSFSE 158
            C  C  CR    + C +       W           + G  I      +V +  +  S 
Sbjct: 89  SCGTCGYCRKGLYSHCES-----GGW-----------ILGNLIDGTQAEYVRIPHADNSL 132

Query: 159 YTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 218
           Y         K+   V    A +LS  + TG         V+ G TV I G G +GLA  
Sbjct: 133 Y---------KLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAAL 183

Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF 277
             A+L   ++II VD+   + E+ K+ G T  VNS         + ++++TDG G D   
Sbjct: 184 LTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNSA---KGDAIEQVLELTDGRGVDVVI 240

Query: 278 ECVGLASLVQEAYACCRK--GWGKTI-VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL 334
           E VG    +   +  C++    G  I  +GV      L L   E L    I + +   GL
Sbjct: 241 EAVG----IPATFELCQELVAPGGHIANVGVHGKPVDLHL---EKLWIKNITITT---GL 290

Query: 335 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 372
              +  P+LLK     +L+  K VTH  K  EI  A+D
Sbjct: 291 VDTNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYD 328

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176207 cd08245, CAD, Cinnamyl alcohol dehydrogenases (CAD) and related proteins

 Score =  120 bits (302), Expect = 6e-31
 Identities = 88/371 (23%), Positives = 144/371 (38%), Gaps = 58/371 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+  A G PL  +EV V  P   EV ++I    +CH+D+   +     + +P + GHE
Sbjct: 1   KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G V  VG  V+G   GD V +   +  C  C  CR    NLC                
Sbjct: 61  IVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKA------------- 107

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                  G     + +   ++EY V D  + V +   +P  +A  L C   T V +A R 
Sbjct: 108 ----VNTG-----YTTQGGYAEYMVADAEYTVLLPDGLPLAQAAPLLCAGIT-VYSALRD 157

Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
           A    G  V + G+G +G    + AR  G    + +    +K E+ ++ G  E V+S   
Sbjct: 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGAE 216

Query: 257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 316
            D            GGAD     V   +  + A    R+G G+ +++G+       S   
Sbjct: 217 LD-------EQAAAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLP-ESPPFSPDI 267

Query: 317 FEVLHSGKILMGSLFGGLK---------AKSDIPILLKRYMDKELELDKFVTHEMKFEEI 367
           F ++   + + GS  GG           A+  +               K +      ++ 
Sbjct: 268 FPLIMKRQSIAGSTHGGRADLQEALDFAAEGKV---------------KPMIETFPLDQA 312

Query: 368 NSAFDLLIKGK 378
           N A++ + KG 
Sbjct: 313 NEAYERMEKGD 323

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes, or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 330

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score =  119 bits (301), Expect = 1e-30
 Identities = 103/366 (28%), Positives = 159/366 (43%), Gaps = 49/366 (13%)

Query: 18  RAAIATAPGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           RA +   PG+     V D VI +P    +  +R++ T +C SD+  ++    P   P  +
Sbjct: 2   RATVIHGPGDIRVEEVPDPVIEEP---TDAVIRVVATCVCGSDLWPYRGVS-PTRAPAPI 57

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHE +GVVE VG  V  V  GD VI  F      C  CR+     C              
Sbjct: 58  GHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSC-------------- 103

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVKVDPTVPPNRACL------LSCGV 186
                  + G     FV      EY  + +A   +VKV P  P +   L      LS  +
Sbjct: 104 -------VHGGFWGAFVD-GGQGEYVRVPLADGTLVKV-PGSPSDDEDLLPSLLALSDVM 154

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
            TG  AA  +A V  GSTVV+ G G++GL     A+  GA RII +    ++  + + FG
Sbjct: 155 GTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFG 213

Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
            T+ V  +  G+++V++ + ++T G GAD   ECVG    +++A A  R G G+   +GV
Sbjct: 214 ATDIVAER--GEEAVAR-VRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGV 269

Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
             P   + L   E+      L G   G    +  +P LL   +   +   +     +  +
Sbjct: 270 --PHGGVELDVRELFFRNVGLAG---GPAPVRRYLPELLDDVLAGRINPGRVFDLTLPLD 324

Query: 366 EINSAF 371
           E+   +
Sbjct: 325 EVAEGY 330

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score =  114 bits (288), Expect = 7e-29
 Identities = 91/352 (25%), Positives = 139/352 (39%), Gaps = 42/352 (11%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILGHEAIGVVESV 85
           L ++E     P   EVRVR+    +C SD+ +++   F  V    P +LGHE  GVVE+V
Sbjct: 9   LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAV 68

Query: 86  GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
           G  V G+  G  V  +    C  C  CR+ + NLC    F  S         RF  ++G 
Sbjct: 69  GPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGS-------AMRFPHVQG- 120

Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV 205
                     F EY V+D +  V +   +   RA  L+  ++  + A  R  ++  G  V
Sbjct: 121 ---------GFREYLVVDASQCVPLPDGLSLRRAA-LAEPLAVALHAVNRAGDL-AGKRV 169

Query: 206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQII 265
           ++ G G IG  V   AR  GA  I+  D+      + +  G  E VN       + +   
Sbjct: 170 LVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLARDPLAAYAADK 229

Query: 266 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV----LGVDQPGSQLSLSSFEVLH 321
                G  D  FE  G  + +  A    R   G T+V    LG   P    +L + E+  
Sbjct: 230 -----GDFDVVFEASGAPAALASALRVVRP--GGTVVQVGMLGGPVPLPLNALVAKEL-- 280

Query: 322 SGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 373
                   L G  +   +    ++      +++   +T     EE   AF L
Sbjct: 281 -------DLRGSFRFDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFAL 325

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|184316 PRK13771, PRK13771, putative alcohol dehydrogenase; Provisional

 Score =  113 bits (286), Expect = 1e-28
 Identities = 96/363 (26%), Positives = 153/363 (42%), Gaps = 42/363 (11%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGH 76
           +A I     +   I+EV    P   EV +++    LC+ D+   +   +P + +P ILGH
Sbjct: 2   KAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQ-GFYPRMKYPVILGH 60

Query: 77  EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           E +G VE VGENV G   GD V     A    C  CRS +   C                
Sbjct: 61  EVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYC---------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            + +   GE +  F     F+EY  + +  +VKV P V    A ++ C          R 
Sbjct: 105 -KNRLGYGEELDGF-----FAEYAKVKVTSLVKVPPNVSDEGAVIVPCVTGMVYRGL-RR 157

Query: 197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           A V+ G TV++ G  G +G+   + A+  GA ++I V     K +I  ++   ++V   +
Sbjct: 158 AGVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKYA--DYVIVGS 214

Query: 256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS 315
              + V +I      GGAD   E VG  +L +E+      G GK I +G   P    SL 
Sbjct: 215 KFSEEVKKI------GGADIVIETVGTPTL-EESLRSLNMG-GKIIQIGNVDPSPTYSLR 266

Query: 316 SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 375
              ++     ++G +      K D+   LK  +  E ++   +  E+   EI+ A + L 
Sbjct: 267 LGYIILKDIEIIGHISAT---KRDVEEALK--LVAEGKIKPVIGAEVSLSEIDKALEELK 321

Query: 376 KGK 378
              
Sbjct: 322 DKS 324

Length = 334

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score =  112 bits (282), Expect = 2e-28
 Identities = 77/364 (21%), Positives = 131/364 (35%), Gaps = 70/364 (19%)

Query: 23  TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAI 79
           T PG    ++E     P   +V VR+    +C SD+  +   +        P   GHE  
Sbjct: 2   TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGW 60

Query: 80  GVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRF 139
           G V ++G  V G+  GD V                                         
Sbjct: 61  GRVVALGPGVRGLAVGDRVA---------------------------------------- 80

Query: 140 KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP--PNRACLLSCGVSTGVGAAWRTA 197
                      +S  +F+EY + D  H V +   +         L C ++      +R  
Sbjct: 81  ----------GLSGGAFAEYDLADADHAVPLPSLLDGQAFPGEPLGCALN-----VFRRG 125

Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            +  G TV + G G IGL   + A   GA R+I +D    +  + +  G TE V   +  
Sbjct: 126 WIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS-- 183

Query: 258 DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG-SQLSLS 315
            +++ + + ++T G GAD   E VG    +  A     +  G+ ++ G  Q G   +   
Sbjct: 184 -EAIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQDGPRPVPFQ 241

Query: 316 SFEVLHSGKILMGSLFGGLKAK-SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLL 374
           +      G  L+ ++    +     +   +K   D  L+L   +THE   EE+  AF+  
Sbjct: 242 T--WNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAA 299

Query: 375 IKGK 378
            +  
Sbjct: 300 RRRP 303

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score =  111 bits (279), Expect = 1e-27
 Identities = 94/345 (27%), Positives = 143/345 (41%), Gaps = 36/345 (10%)

Query: 44  VRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL 103
           V+V     ++C SD+  ++          +LGHE +G V  VG  V  +  GD V+  F 
Sbjct: 30  VKVTA--AAICGSDLHIYRGHIPSTP-GFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFT 86

Query: 104 ADCTECVGCRSKKGNLCS---AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT 160
             C EC  CR  +   C+    F +  SP +   Q              +V V  F++ T
Sbjct: 87  IACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQA------------EYVRVP-FADGT 133

Query: 161 VLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEG 220
           +      +K+   +    A LL   + TG   A + A V  G TV + G G +GL     
Sbjct: 134 L------LKLPDGLSDEAALLLGDILPTGYFGA-KRAQVRPGDTVAVIGCGPVGLCAVLS 186

Query: 221 ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFEC 279
           A++ GA R+  VD + E+ E     G  E +N +   D    + + + T+G GAD   E 
Sbjct: 187 AQVLGAARVFAVDPVPERLERAAALG-AEPINFE---DAEPVERVREATEGRGADVVLEA 242

Query: 280 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD 339
           VG A+ +  A+   R   G    +GV     +      +     K L    FG    +S 
Sbjct: 243 VGGAAALDLAFDLVRP-GGVISSVGVHTAE-EFPFPGLDAY--NKNLTLR-FGRCPVRSL 297

Query: 340 IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 384
            P LL       L+L+  + H M  EE   A+ L  K K L+ V+
Sbjct: 298 FPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVL 342

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score =  110 bits (277), Expect = 2e-27
 Identities = 94/378 (24%), Positives = 155/378 (41%), Gaps = 61/378 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA---VFPRIL 74
           +A + T  G    + EV V  P   EV ++++  S+C +DV  ++  ++       P I 
Sbjct: 2   KAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIF 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVV-----IPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           GHE  G V  VGE V  V  GD V     I      C +C  CR+   ++C         
Sbjct: 62  GHEFAGEVVEVGEGVTRVKVGDYVSAETHIV-----CGKCYQCRTGNYHVC--------- 107

Query: 130 WMPRDQTSRF--KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                Q ++    D  G           F+EY V+   ++ K D  +PP  A      + 
Sbjct: 108 -----QNTKILGVDTDG----------CFAEYVVVPEENLWKNDKDIPPEIA-----SIQ 147

Query: 188 TGVGAAWRTANVE--VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
             +G A  T       G +V+I G G IGL     A+  GA+ +I  D    + E+ K+ 
Sbjct: 148 EPLGNAVHTVLAGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKM 207

Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           G    +N +   ++ V ++       G D   E  G    +++       G G+  +LG+
Sbjct: 208 GADVVINPR---EEDVVEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGL 263

Query: 306 DQPGSQLSLSSFEVLHSGKILMG----SLFGGLKAKSDIPILLKRYMDKELELDKFVTHE 361
                 + L++  V+  G  + G     +F      S    LLK     +++L   +TH+
Sbjct: 264 PPGPVDIDLNN-LVIFKGLTVQGITGRKMFETWYQVSA---LLK---SGKVDLSPVITHK 316

Query: 362 MKFEEINSAFDLLIKGKC 379
           +  E+   AF+L+  GKC
Sbjct: 317 LPLEDFEEAFELMRSGKC 334

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176186 cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  108 bits (272), Expect = 1e-26
 Identities = 87/382 (22%), Positives = 135/382 (35%), Gaps = 69/382 (18%)

Query: 22  ATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGV 81
           A      L        P    +V ++I    +CHSD+   + +  P  +P + GHE +G+
Sbjct: 5   ARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGI 64

Query: 82  VESVGENVDGVVEGDVVIPHFLAD-CTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFK 140
           V +VG  V     GD V      D C  C  C+S +   C           P+   +   
Sbjct: 65  VVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYC-----------PKGVVTYNG 113

Query: 141 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE 200
                TI        ++++ V+D   V K+   +    A  L C   T V +  +   V 
Sbjct: 114 KYPDGTITQ----GGYADHIVVDERFVFKIPEGLDSAAAAPLLCAGIT-VYSPLKRNGVG 168

Query: 201 VGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS---EKFEIGKRFGVTEFVN 252
            G  V + G+G +G      A A GA          V   S    K E   + G  EF+ 
Sbjct: 169 PGKRVGVVGIGGLGHLAVKFAKALGAE---------VTAFSRSPSKKEDALKLGADEFIA 219

Query: 253 SKNCGD-KSVSQ---IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
           +K+    K  +    +IID      D             + Y    K  G  +++G   P
Sbjct: 220 TKDPEAMKKAAGSLDLIIDTVSASHDL------------DPYLSLLKPGGTLVLVGA--P 265

Query: 309 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELD-----KFVTHEMK 363
              L +  F ++   K + GSL GG K              + L+       K     + 
Sbjct: 266 EEPLPVPPFPLIFGRKSVAGSLIGGRKE-----------TQEMLDFAAEHGIKPWVEVIP 314

Query: 364 FEEINSAFDLLIKGKCL-RCVI 384
            + IN A + L KG    R V+
Sbjct: 315 MDGINEALERLEKGDVRYRFVL 336

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score =  104 bits (262), Expect = 1e-25
 Identities = 81/294 (27%), Positives = 131/294 (44%), Gaps = 38/294 (12%)

Query: 18  RAAIATAPGEPLV-IDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           +A + T PG   V + EV    P   EV +++    +C SD+  +K    P   P +LGH
Sbjct: 2   KALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGH 61

Query: 77  EAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           E  G +  VG +V+G   GD VV     + C  C  CR    NLC               
Sbjct: 62  EFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPH------------- 108

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGA 192
               +   G           F+EY ++    + ++   +    A L   L+  V     A
Sbjct: 109 ----RKGIGTQAD-----GGFAEYVLVPEESLHELPENLSLEAAALTEPLAVAVH----A 155

Query: 193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII-GVDVISEKFEIGKRFGVTEFV 251
               + +  G TVV+FG G IGL  A+ A+L GAT ++ G +    + ++ K  G     
Sbjct: 156 VAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGAD--- 212

Query: 252 NSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 304
            + N G++ +++++ ++TDG GAD   EC G    +++A    RKG G+ + +G
Sbjct: 213 -AVNGGEEDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVG 264

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score =  103 bits (259), Expect = 7e-25
 Identities = 92/376 (24%), Positives = 160/376 (42%), Gaps = 48/376 (12%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF-----WKMKDFPAVFPRI 73
           A + T PG    + EV V  P   EV ++++ TS+C +DV       W         P++
Sbjct: 1   ALMKTKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKP--PQV 58

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           +GHE  G V  +G  V+G+  GD V       C +C  CR  + ++C             
Sbjct: 59  VGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVC------------- 105

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGV 190
                    +   I    +   F+EY V+   ++ K   ++PP  A +   L   V T +
Sbjct: 106 ---------QNTKIFGVDTDGCFAEYAVVPAQNIWKNPKSIPPEYATIQEPLGNAVHTVL 156

Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
                 A    G +V++ G G IGL     A+  GA  +I  D    + E+ K+ G T  
Sbjct: 157 ------AGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYV 210

Query: 251 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
           VN      + V + + D+TDG G D   E  G    +++       G G+  +LG+  P 
Sbjct: 211 VNPF---KEDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGL--PP 264

Query: 310 SQLSLS-SFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 368
            ++++  + +V+  G  + G    G         + +     +L+LD  +TH+ KF++  
Sbjct: 265 GKVTIDFTNKVIFKGLTIYG--ITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFE 322

Query: 369 SAFDLLIKGKCLRCVI 384
             F+L+  G+  + ++
Sbjct: 323 KGFELMRSGQTGKVIL 338

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176211 cd08249, enoyl_reductase_like, enoyl_reductase_like

 Score =  101 bits (254), Expect = 3e-24
 Identities = 85/384 (22%), Positives = 134/384 (34%), Gaps = 79/384 (20%)

Query: 18  RAAIATAP-GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRIL 74
           +AA+ T P G  LV+ +V V  P   EV V++   +L   D   WK +D+  +  +P IL
Sbjct: 2   KAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVD---WKHQDYGFIPSYPAIL 58

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  G V  VG  V     GD V                + G                 
Sbjct: 59  GCDFAGTVVEVGSGVTRFKVGDRV----AGFVHGGNPNDPRNG----------------- 97

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST------ 188
                               +F EY V D     K+   +    A  L  G+ T      
Sbjct: 98  --------------------AFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAALALF 137

Query: 189 ---GVGAAWRTAN-VEVGSTVVIFGLGS--IGLAVAEGARLCGATRIIGVDVISEK-FEI 241
              G+       +    G  V+I+G GS  +G    + A+L G  ++I     S K F++
Sbjct: 138 QKLGLPLPPPKPSPASKGKPVLIWG-GSSSVGTLAIQLAKLAGY-KVIT--TASPKNFDL 193

Query: 242 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI 301
            K  G     +     D  V + I   T G   Y  +C+      Q       +  G  +
Sbjct: 194 VKSLGADAVFDYH---DPDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKL 250

Query: 302 V--LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT 359
           V  L V +          + +    +L  ++FG +    +   +  +Y+ + LE  K   
Sbjct: 251 VSLLPVPEET-----EPRKGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKP 305

Query: 360 HEMK-----FEEINSAFDLLIKGK 378
           H ++      E +    DLL KGK
Sbjct: 306 HPVRVVEGGLEGVQEGLDLLRKGK 329

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 339

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score =  101 bits (253), Expect = 4e-24
 Identities = 79/369 (21%), Positives = 126/369 (34%), Gaps = 62/369 (16%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRIL 74
           +A +    G P  L + EV    P   EV VR+    +   DV   +    P    P I 
Sbjct: 2   KAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIP 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G EA GVV +VG  V G   GD V                                    
Sbjct: 62  GSEAAGVVVAVGSGVTGFKVGDRVAALGG------------------------------- 90

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                                ++EY V+    +V +   +    A  L     T   A +
Sbjct: 91  ---------------VGRDGGYAEYVVVPADWLVPLPDGLSFEEAAALPLAGLTAWLALF 135

Query: 195 RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
             A ++ G TV++ G  G +G A  + A+  GAT +  V   SEK E+ K  G    +N 
Sbjct: 136 DRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS-SEKLELLKELGADHVINY 194

Query: 254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 312
           +   ++   + + ++T G G D   + VG       + A    G G+ + +G    G  +
Sbjct: 195 R---EEDFVEQVRELTGGKGVDVVLDTVG-GDTFAASLAALAPG-GRLVSIGALSGGPPV 249

Query: 313 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF---VTHEMKFEEINS 369
            L+   +L     L G   G    ++    L +  +   L   K    +       E  +
Sbjct: 250 PLNLLPLLGKRLTLRGVTLGSRDPEALAEALAE--LFDLLASGKLKPVIDRVYPLAEAPA 307

Query: 370 AFDLLIKGK 378
           A   L+  +
Sbjct: 308 AAAHLLLER 316

Length = 326

>gnl|CDD|176258 cd08298, CAD2, Cinnamyl alcohol dehydrogenases (CAD)

 Score =  100 bits (251), Expect = 8e-24
 Identities = 59/225 (26%), Positives = 87/225 (38%), Gaps = 41/225 (18%)

Query: 18  RAAIATAPG----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAV 69
           +A +   PG     PL + EV V  P   EV +++    +C +D+            P  
Sbjct: 2   KAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLP----PPK 57

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
            P I GHE +G VE+VG  V     GD V +P   + C EC  CRS + NLC    F   
Sbjct: 58  LPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFT-- 115

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST 188
                          G T+        ++EY V D      +        A  L C    
Sbjct: 116 ---------------GYTVD-----GGYAEYMVADERFAYPIPEDYDDEEAAPLLCAGII 155

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATR 228
           G   A + A ++ G  + ++G G+       +A  +GA +   TR
Sbjct: 156 GYR-ALKLAGLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTR 199

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 329

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 97.0 bits (242), Expect = 5e-23
 Identities = 53/230 (23%), Positives = 95/230 (41%), Gaps = 23/230 (10%)

Query: 157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216
           +E  V+    +V +   +PP RA L +   +T +      A   +G  V + GLG +GL 
Sbjct: 55  AERVVVPANLLVPLPDGLPPERAALTALA-ATALNGVRD-AEPRLGERVAVVGLGLVGLL 112

Query: 217 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC 276
            A+ A+  GA  ++GVD  + + E+ +  G  + V +             ++   GAD  
Sbjct: 113 AAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAAD---------TADEIGGRGADVV 163

Query: 277 FECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG--KILMGSLFGGL 334
            E  G  S ++ A    R   G+ +++G       L L   E  H     I    ++G  
Sbjct: 164 IEASGSPSALETALRLLRDR-GRVVLVGWYGLKP-LLLG--EEFHFKRLPIRSSQVYGIG 219

Query: 335 KAKSDIPILLKRYMDKELEL------DKFVTHEMKFEEINSAFDLLIKGK 378
           +          R +++ L+L      +  +TH + FE+   A+ LL +  
Sbjct: 220 RYDRPRRWTEARNLEEALDLLAEGRLEALITHRVPFEDAPEAYRLLFEDP 269

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family

 Score = 98.0 bits (244), Expect = 1e-22
 Identities = 87/366 (23%), Positives = 149/366 (40%), Gaps = 53/366 (14%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM-KD----FPAV--FPRILGHEAIGV 81
           L +++V V      E+ +R+    +C SD+  ++  KD    +P +  FP ++GHE  GV
Sbjct: 39  LRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGV 98

Query: 82  VESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD 141
           VE  G+NV    +GD V    +  C  C  CRS   N C                   K+
Sbjct: 99  VEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCK----------------NLKE 142

Query: 142 LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV---PPNRACLLSCGVS-TGV---GAAW 194
           L       F +  +F+EY  ++  +  +++        ++A      V  T V   G   
Sbjct: 143 L------GFSADGAFAEYIAVNARYAWEINELREIYSEDKAFEAGALVEPTSVAYNGLFI 196

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
           R      G+ VV++G G IGLA    A+  GA+++I  ++  E+  + K  G     N  
Sbjct: 197 RGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERRNLAKEMGADYVFNPT 256

Query: 255 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLV----QEAYACCRKGWGKTIVLGVDQPG 309
              D    + ++++T G GAD   E  G         +++ A      GK + +G  +  
Sbjct: 257 KMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN----GKIVYIG--RAA 310

Query: 310 SQLSLSSFEVLHSGKILMGSLFG--GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 367
           + + L   EVL   +     + G  G       P ++K     ++++ K +T     E I
Sbjct: 311 TTVPL-HLEVLQVRR---AQIVGAQGHSGHGIFPSVIKLMASGKIDMTKIITARFPLEGI 366

Query: 368 NSAFDL 373
             A   
Sbjct: 367 MEAIKA 372

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 384

>gnl|CDD|219758 pfam08240, ADH_N, Alcohol dehydrogenase GroES-like domain

 Score = 90.4 bits (225), Expect = 3e-22
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 22/129 (17%)

Query: 42  HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
            EV VR+    +C SD+  ++ +  P   P ILGHE  G+VE VG  V G+  GD V+ +
Sbjct: 2   GEVLVRVKAAGICGSDLHIYRGEPPPVKLPLILGHEGAGIVEEVGPGVTGLKVGDRVVVY 61

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            L  C +C  CR  + NLC                       G  +        F+EY V
Sbjct: 62  PLIPCGKCAACREGRENLCPN-----------------GKFLGVHLD-----GGFAEYVV 99

Query: 162 LDIAHVVKV 170
           +   ++V +
Sbjct: 100 VPARNLVPL 108

This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure. Length = 108

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 95.7 bits (239), Expect = 4e-22
 Identities = 89/387 (22%), Positives = 157/387 (40%), Gaps = 80/387 (20%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF-----WKMKDFPAVFPR 72
           +A +       L + +V V  P  ++V +++  T++C +DV       W  K  P   P 
Sbjct: 2   KALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPV--PM 59

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIP--HFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           ++GHE +G V  VG  V G   GD V    H +  C  C  CR+ + +LC          
Sbjct: 60  VVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIV--CGHCRNCRAGRRHLC---------- 107

Query: 131 MPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                    ++ +G      V V+   +F+EY V+   +V K+   +P + A +      
Sbjct: 108 ---------RNTKG------VGVNRPGAFAEYLVIPAFNVWKIPDDIPDDLAAIFD---- 148

Query: 188 TGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
              G A  TA   ++ VG  V+I G G IG+  A  A+  GA  ++  DV   + E+ ++
Sbjct: 149 -PFGNAVHTALSFDL-VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARK 206

Query: 245 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 303
            G T  VN      + +  ++ ++    G D   E  G  S  ++       G G+  +L
Sbjct: 207 MGATRAVNV---AKEDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAML 262

Query: 304 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYM-----------DKEL 352
           G+  P   +++   +V+  G  + G ++G             R M              L
Sbjct: 263 GI--PPGDMAIDWNKVIFKGLTIKG-IYG-------------REMFETWYKMSALLQSGL 306

Query: 353 ELDKFVTHEMKFEEINSAFDLLIKGKC 379
           +L   +TH    ++    F+ +  G+ 
Sbjct: 307 DLSPIITHRFPIDDFQKGFEAMRSGQS 333

Length = 341

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score = 95.6 bits (238), Expect = 6e-22
 Identities = 102/363 (28%), Positives = 151/363 (41%), Gaps = 51/363 (14%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MK--DFPAVFPRILGHEAIGVVESV 85
           L I    + P   H+VRVR+    +C SDV + K M+  DF    P ++GHE  G++E V
Sbjct: 29  LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEV 88

Query: 86  GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
           G  V  +V GD V       C  C  C+  + NLC    F  +P                
Sbjct: 89  GSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATP---------------- 132

Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVG 202
            +H      S +   V       K+   V      +   LS GV      A R AN+   
Sbjct: 133 PVH-----GSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVH-----ACRRANIGPE 182

Query: 203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN-SKNCGD--K 259
           + V++ G G IGL     AR  GA RI+ VDV  E+  + K+ G  E V  S N  D   
Sbjct: 183 TNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIVLVSTNIEDVES 242

Query: 260 SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF-- 317
            V +I   M  GG D  F+CVG    +  A    R G GK  ++G+      + L+    
Sbjct: 243 EVEEIQKAMG-GGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHNEMTVPLTPAAA 300

Query: 318 -EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF--EEINSAFDLL 374
            EV          + G  + ++  P+ L+     ++++   +TH   F  +E+  AF+  
Sbjct: 301 REV---------DVVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETS 351

Query: 375 IKG 377
            +G
Sbjct: 352 ARG 354

Length = 364

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 85.4 bits (212), Expect = 3e-20
 Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 6/124 (4%)

Query: 213 IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG- 271
           +GLA  + A+  GA R+I VD   EK E+ K  G    +N +   D+   + + ++T G 
Sbjct: 2   VGLAAVQLAKALGAARVIAVDRSEEKLELAKELGADHVINYR---DEDFVERVRELTGGR 58

Query: 272 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF 331
           G D   +CVG  + +++A    R G    +V         +     ++L     ++GSL 
Sbjct: 59  GVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGA--PVPFPLRDLLLKELTILGSLG 116

Query: 332 GGLK 335
           GG +
Sbjct: 117 GGRE 120

Length = 131

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 89.8 bits (223), Expect = 6e-20
 Identities = 77/293 (26%), Positives = 123/293 (41%), Gaps = 43/293 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV-------TFWKMKDFPAVF 70
           RA +   P +   ++EV V  P   E+ V++    +C  D+       +FW  ++ P   
Sbjct: 2   RAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYV 60

Query: 71  --PRILGHEAIGVVESVGENVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             P I GHE +G V  +GE  +  GV  GD VI   +  C  C  C   +  +C      
Sbjct: 61  KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQK---- 116

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LS 183
                         DL G   +    ++ +  +    I H  KV   +PP  A L   L+
Sbjct: 117 -------------HDLYGFQNNVNGGMAEYMRFPKEAIVH--KVPDDIPPEDAILIEPLA 161

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 243
           C +     A  R AN++    VV+ G G +GL +   ARL    ++I +D+  E+  + +
Sbjct: 162 CALH----AVDR-ANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALAR 216

Query: 244 RFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRK 295
           +FG    +N     +  V + I ++T G G D   E  G  S V++     RK
Sbjct: 217 KFGADVVLNPP---EVDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRK 266

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176227 cd08266, Zn_ADH_like1, Alcohol dehydrogenases of the MDR family

 Score = 89.2 bits (222), Expect = 6e-20
 Identities = 67/288 (23%), Positives = 114/288 (39%), Gaps = 40/288 (13%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           +A +    G P  L   ++    P   EV VR+   +L H D+   +      +  P IL
Sbjct: 2   KAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHIL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVVE+VG  V  V  G  V+ +    C  C  C + + NLC+ +           
Sbjct: 62  GSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQY----------- 110

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                  + GE +        ++EY  +   +++ +   +    A        T    AW
Sbjct: 111 ------GILGEHVDGG-----YAEYVAVPARNLLPIPDNLSFEEAAAAPLTFLT----AW 155

Query: 195 RT----ANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
                 A +  G TV++ G GS +G A  + A+L GAT I       +K E  K  G   
Sbjct: 156 HMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGS-EDKLERAKELGADY 214

Query: 250 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKG 296
            ++ +    +   + + ++T   G D   E VG A+  +++     +G
Sbjct: 215 VIDYRK---EDFVREVRELTGKRGVDVVVEHVGAATW-EKSLKSLARG 258

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 342

>gnl|CDD|176256 cd08296, CAD_like, Cinnamyl alcohol dehydrogenases (CAD)

 Score = 85.8 bits (213), Expect = 1e-18
 Identities = 84/378 (22%), Positives = 147/378 (38%), Gaps = 71/378 (18%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A   T PG PL + E  V  P   EV +++    +CHSD    +       +PR+ GHE
Sbjct: 2   KAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G +++VGE V     GD V +      C  C  CR                       
Sbjct: 62  VVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACR----------------------- 98

Query: 137 SRFKDLRGETIH----HFVSVSS---FSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
                 RG+ +H        V+    ++EY +     + ++   +    A  L C GV+T
Sbjct: 99  ------RGDFVHCENGKVTGVTRDGGYAEYMLAPAEALARIPDDLDAAEAAPLLCAGVTT 152

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
               A R +  + G  V + G+G +G LAV + A   G  R + +   S+K ++ ++ G 
Sbjct: 153 --FNALRNSGAKPGDLVAVQGIGGLGHLAV-QYAAKMG-FRTVAISRGSDKADLARKLGA 208

Query: 248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 307
             ++++     + V++ + ++  GGA         A  +           GK ++LG   
Sbjct: 209 HHYIDTS---KEDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAA- 261

Query: 308 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH------- 360
            G  +++S  +++   K + G   G               +D E  L     H       
Sbjct: 262 -GEPVAVSPLQLIMGRKSIHGWPSG-------------TALDSEDTLKFSALHGVRPMVE 307

Query: 361 EMKFEEINSAFDLLIKGK 378
               E+ N A+D ++ GK
Sbjct: 308 TFPLEKANEAYDRMMSGK 325

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADHs), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 333

>gnl|CDD|182229 PRK10083, PRK10083, putative oxidoreductase; Provisional

 Score = 83.3 bits (206), Expect = 9e-18
 Identities = 75/352 (21%), Positives = 141/352 (40%), Gaps = 48/352 (13%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88
           L I+E  +  P + EVRV++    +C SD   ++  +  A +PR++GHE  GV+++VGE 
Sbjct: 12  LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 71

Query: 89  VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148
           VD    G+ V    +  C  C  C   K N+C++    +   + RD              
Sbjct: 72  VDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSL---VVLGVHRD-------------- 114

Query: 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV--GSTVV 206
                  FSEY V+   +  ++   +    A +    V     AA  T           +
Sbjct: 115 -----GGFSEYAVVPAKNAHRIPDAIADQYAVM----VEPFTIAANVTGRTGPTEQDVAL 165

Query: 207 IFGLGSIGLAVAEG-ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQII 265
           I+G G +GL + +    +     +I  D I E+  + K  G    +N+     + + + +
Sbjct: 166 IYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINN---AQEPLGEAL 222

Query: 266 ----IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH 321
               I  T        +     S+++EA         + +++G     S++         
Sbjct: 223 EEKGIKPT-----LIIDAACHPSILEEAVTLASPA-ARIVLMGFSSEPSEIVQQGI---- 272

Query: 322 SGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 373
           +GK L  S+F      +  P+++       ++ +K +TH   F+ +  A +L
Sbjct: 273 TGKEL--SIFSSRLNANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIEL 322

Length = 339

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 83.0 bits (205), Expect = 1e-17
 Identities = 87/378 (23%), Positives = 154/378 (40%), Gaps = 52/378 (13%)

Query: 23  TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRILGHEAIG 80
           T PG+P+V   V +    + +V V++    +CH+D++++ M         P  LGHE  G
Sbjct: 5   TEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYM-GVRTNHALPLALGHEISG 63

Query: 81  VVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFK 140
            V   G      +   V++P  +  C EC  C++ +G +C            R Q     
Sbjct: 64  RVIQAGAGAASWIGKAVIVPAVIP-CGECELCKTGRGTIC------------RAQKMPGN 110

Query: 141 DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE 200
           D++G    H V  +      V+D A +      +P     +++  V+T   AA + A ++
Sbjct: 111 DMQGGFASHIVVPAKG--LCVVDEARLAAAG--LPLEHVSVVADAVTTPYQAAVQ-AGLK 165

Query: 201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS 260
            G  V++ G G +G  + + A+  GA  ++ +D+  EK E+ K FG    +N K+   + 
Sbjct: 166 KGDLVIVIGAGGVGGYMVQTAKAMGAA-VVAIDIDPEKLEMMKGFGADLTLNPKDKSARE 224

Query: 261 VSQIIIDMTDGGADYC------------FECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
           V ++I         +             FEC G     + A +    G G  +V+G    
Sbjct: 225 VKKLI-------KAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMA 276

Query: 309 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDI-PILLKRYMDKELELDKFV-THEMKFEE 366
            ++  LS+    H+  +      G      D  P  L   +D +++L  FV    +  ++
Sbjct: 277 KTEYRLSNLMAFHARAL------GNWGCPPDRYPAALDLVLDGKIQLGPFVERRPL--DQ 328

Query: 367 INSAFDLLIKGKCLRCVI 384
           I   F      K  R  I
Sbjct: 329 IEHVFAAAHHHKLKRRAI 346

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|182371 PRK10309, PRK10309, galactitol-1-phosphate dehydrogenase; Provisional

 Score = 83.0 bits (205), Expect = 1e-17
 Identities = 71/297 (23%), Positives = 112/297 (37%), Gaps = 56/297 (18%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVF-------PRILGHEAIGVVESVGENVDGVVEG 95
           +V V++  + LC SD+        P +F       P  LGHE  G VE+VG  VD +  G
Sbjct: 27  DVLVKVASSGLCGSDI--------PRIFKNGAHYYPITLGHEFSGYVEAVGSGVDDLHPG 78

Query: 96  DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSS 155
           D V    L  C  C  C     +LC+ + F           SR                 
Sbjct: 79  DAVACVPLLPCFTCPECLRGFYSLCAKYDFI---------GSR-------------RDGG 116

Query: 156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
            +EY V+   ++  +   +P      +   ++ G+ A       E G  V+I G G+IGL
Sbjct: 117 NAEYIVVKRKNLFALPTDMPIEDGAFIE-PITVGLHAFHLAQGCE-GKNVIIIGAGTIGL 174

Query: 216 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY 275
              + A   GA  +  +D+ SEK  + K  G  +  NS+            +M+      
Sbjct: 175 LAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSR------------EMSAPQIQS 222

Query: 276 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 332
               +    L+ E       G  +T+ L ++  G +  L+    LH    L  + FG
Sbjct: 223 VLRELRFDQLILET-----AGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFG 274

Length = 347

>gnl|CDD|176192 cd08230, glucose_DH, Glucose dehydrogenase

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 102/388 (26%), Positives = 146/388 (37%), Gaps = 83/388 (21%)

Query: 20  AIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDV--------TFWKMKDFPAVF 70
           AIA  PG+P V    I +P P   EV VR +   +C +D         T    +DF    
Sbjct: 3   AIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDF---- 58

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
             +LGHEA+GVVE VG+   G+  GD+V+P       +C+ CR  + + C          
Sbjct: 59  -LVLGHEALGVVEEVGDG-SGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCE--------- 107

Query: 131 MPRDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                T  + + RG   +H F       EY V D  ++VKV P++  +   L   LS   
Sbjct: 108 -----TGEYTE-RGIKGLHGF-----MREYFVDDPEYLVKVPPSL-ADVGVLLEPLSV-- 153

Query: 187 STGVGAAWRTANVEVGS--------TVVIFGLGSIGL-----AVAEGARLCGATRIIGVD 233
              V  A   A   V            ++ G G IGL         G  +    R    D
Sbjct: 154 ---VEKAIEQA-EAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR---RD 206

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 293
               K +I +  G T +VNS       V         G  D   E  G+  L  EA    
Sbjct: 207 PPDPKADIVEELGAT-YVNSSKTPVAEVK------LVGEFDLIIEATGVPPLAFEALPAL 259

Query: 294 RKGWGKTIVLGVDQPGSQLSLSSFE-----VLHSGKILMGSLFGGLK----AKSDIPILL 344
               G  I+ GV   G +  +   E     VL + K L+GS+    +    A  D+    
Sbjct: 260 APN-GVVILFGVPGGGREFEVDGGELNRDLVLGN-KALVGSVNANKRHFEQAVEDLAQWK 317

Query: 345 KRYMDKELELDKFVTHEMKFEEINSAFD 372
            R+      L++ +T  +  EE   A  
Sbjct: 318 YRWPGV---LERLITRRVPLEEFAEALT 342

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 355

>gnl|CDD|181842 PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

 Score = 80.8 bits (200), Expect = 6e-17
 Identities = 94/377 (24%), Positives = 153/377 (40%), Gaps = 67/377 (17%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +AA+        V+ E  + P    E  V++    +CH+D+      DF     RILGHE
Sbjct: 2   KAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHV-ANGDFGDKTGRILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            IG+V+ VG  V  +  GD V I  F   C  C  C + +  LC                
Sbjct: 61  GIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLC---------------- 104

Query: 137 SRFKDLR--GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
              + ++  G T+         +E  ++   + VKV   + P +A  ++C GV+T    A
Sbjct: 105 ---RSVKNAGYTVD-----GGMAEQCIVTADYAVKVPEGLDPAQASSITCAGVTT--YKA 154

Query: 194 WRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
            + + ++ G  + I+G G +G LA+     +  A ++I VD+  +K  + K  G    +N
Sbjct: 155 IKVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTIN 213

Query: 253 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 312
           SK   D      II    GGA          +   +A    R G G+ + +G+  P   +
Sbjct: 214 SKRVED---VAKIIQEKTGGAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGL--PPESM 267

Query: 313 SLSSFEVLHSGKILMGSLFG-----------GLKAKSDIPILLKRYMDKELELDKFVTHE 361
            LS   ++  G  ++GSL G           G + K  +P +  R               
Sbjct: 268 DLSIPRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKV-VPKVQLR--------------- 311

Query: 362 MKFEEINSAFDLLIKGK 378
              E+IN  FD + +GK
Sbjct: 312 -PLEDINDIFDEMEQGK 327

Length = 338

>gnl|CDD|176191 cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

 Score = 78.4 bits (194), Expect = 3e-16
 Identities = 67/376 (17%), Positives = 115/376 (30%), Gaps = 90/376 (23%)

Query: 18  RAAIATAPGEPLVIDEV-IVDP-PNSHEVRVRIICTSLCHSDVTF---WKMKDFPAVFPR 72
           +A      G P V++   +  P P   EV V++    +   D+          FP   P 
Sbjct: 2   KAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPL 61

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           I GH+  GVV +VG  V G   GD V                                  
Sbjct: 62  IPGHDVAGVVVAVGPGVTGFKVGDEVF----------------------GMTP------- 92

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                            F    +++EY V+    +      +    A      +      
Sbjct: 93  -----------------FTRGGAYAEYVVVPADELALKPANLSFEEA----AALPLAGLT 131

Query: 193 AWRT----ANVEVGSTVVIFG-LGSIG-----LAVAEGARLCGATRIIGVDVISEKFEIG 242
           AW+       ++ G TV+I G  G +G     LA A GAR+            +   +  
Sbjct: 132 AWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATAS-------AANADFL 184

Query: 243 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 302
           +  G  E ++      +  +        GG D   + VG  +L   + A  + G G+  +
Sbjct: 185 RSLGADEVIDYTKGDFERAAAP------GGVDAVLDTVGGETL-ARSLALVKPG-GR--L 234

Query: 303 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 362
           + +  P      +    + +G + +      L         L   ++   +L   V    
Sbjct: 235 VSIAGPPPAEQAAKRRGVRAGFVFVEPDGEQLAE-------LAELVEAG-KLRPVVDRVF 286

Query: 363 KFEEINSAFDLLIKGK 378
             E+   A + L  G 
Sbjct: 287 PLEDAAEAHERLESGH 302

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 309

>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR)

 Score = 70.2 bits (173), Expect = 2e-13
 Identities = 65/272 (23%), Positives = 102/272 (37%), Gaps = 64/272 (23%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
           +A +    G P  LV++EV  +P    EVR+R+    +   D+      +++K  P + P
Sbjct: 2   KAVVCKELGGPEDLVLEEVPPEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVK--PPL-P 58

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            + G E  GVVE+VGE V G   GD V           V                     
Sbjct: 59  FVPGSEVAGVVEAVGEGVTGFKVGDRV-----------VA-------------------- 87

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                                   F+E  V+  A V  +   +    A  L     T   
Sbjct: 88  ------------------LTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYH 129

Query: 192 AAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           A  R A ++ G TV++ G  G +GLA  + A+  GA R+I      EK  + +  G    
Sbjct: 130 ALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHV 188

Query: 251 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVG 281
           ++     D  + + +  +T G G D  ++ VG
Sbjct: 189 IDY---RDPDLRERVKALTGGRGVDVVYDPVG 217

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 66/304 (21%), Positives = 107/304 (35%), Gaps = 56/304 (18%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWK----MKDFPAVFPR 72
           RAA+      PLV+ + + DP P   +V V+++   +C SD+        M D       
Sbjct: 2   RAAVFR--DGPLVVRD-VPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSL 58

Query: 73  -------ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF 125
                  +LGHE  G V   G   +                      + K G   ++ P 
Sbjct: 59  MDLGADIVLGHEFCGEVVDYGPGTER---------------------KLKVGTRVTSLPL 97

Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---L 182
            +             +  G           ++EY +L  A +++V   +    A L   L
Sbjct: 98  LLCGQGASCGIGLSPEAPG----------GYAEYMLLSEALLLRVPDGLSMEDAALTEPL 147

Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
           + G+      A R A +  G   ++ G G IGLAV    +  G   I+  D   E+  + 
Sbjct: 148 AVGLH-----AVRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALA 202

Query: 243 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA-DYCFECVGLASLVQEAYACCRKGWGKTI 301
              G    V+       +     +    G      FECVG   L+Q+       G G+ +
Sbjct: 203 LAMGADIVVDPAADSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIV 261

Query: 302 VLGV 305
           V+GV
Sbjct: 262 VVGV 265

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176232 cd08271, MDR5, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 68.5 bits (168), Expect = 7e-13
 Identities = 64/272 (23%), Positives = 102/272 (37%), Gaps = 61/272 (22%)

Query: 17  CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV---FP 71
            +A +   PG    L ++E+ +  P + EV V++    L   D   WK+  +      +P
Sbjct: 1   MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVD---WKVIAWGPPAWSYP 57

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            + G +  GVV +VG  V G   GD V  H                              
Sbjct: 58  HVPGVDGAGVVVAVGAKVTGWKVGDRVAYH------------------------------ 87

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                S  +              SF+EYTV+D   V+ +  ++    A  L C   T   
Sbjct: 88  ----ASLARG------------GSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQ 131

Query: 192 AAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           A ++   +E G T++I G  G +G    + A+  G  R+I        FE  K  G    
Sbjct: 132 ALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVI-TTCSKRNFEYVKSLGADHV 189

Query: 251 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVG 281
           ++     D+ V + I ++T G G D   + VG
Sbjct: 190 IDYN---DEDVCERIKEITGGRGVDAVLDTVG 218

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 325

>gnl|CDD|176233 cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 68.4 bits (168), Expect = 9e-13
 Identities = 68/285 (23%), Positives = 100/285 (35%), Gaps = 79/285 (27%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           +A +  + G P    + EV    P   +V VR+  + +   D    +         P IL
Sbjct: 2   KALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAIL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVVE+VGE V     GD V            GC                      
Sbjct: 62  GCDVAGVVEAVGEGVTRFRVGDEVY-----------GC---------------------- 88

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLD---IAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                  L+G          S +EY V+D   +A         P N +   +  +     
Sbjct: 89  -AGGLGGLQG----------SLAEYAVVDARLLAL-------KPANLSMREAAALPLVGI 130

Query: 192 AAW----RTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFEI 241
            AW      A V+ G TV+I     G+G +   LA A GAR+  AT        SEK   
Sbjct: 131 TAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVY-AT------ASSEKAAF 183

Query: 242 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL 285
            +  G    +  +     +V + + + T G G D  F+ VG  +L
Sbjct: 184 ARSLGADPIIYYRE----TVVEYVAEHTGGRGFDVVFDTVGGETL 224

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 326

>gnl|CDD|176225 cd08264, Zn_ADH_like2, Alcohol dehydrogenases of the MDR family

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 70/249 (28%), Positives = 106/249 (42%), Gaps = 39/249 (15%)

Query: 18  RAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSD---VTFWKMKDFPAVFPRI 73
           +A +    G E L +++V    P   EV +R+    +   D   +   K+K      P I
Sbjct: 2   KALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAVKVK----PMPHI 57

Query: 74  LGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            G E  GVVE VG++V GV +GD VV+ + + D T C  C S    LC            
Sbjct: 58  PGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGT-CDMCLSGNEMLC------------ 104

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                     R   I   VS   ++EY V+   ++ K+  ++    A  L     T   A
Sbjct: 105 ----------RNGGIIGVVSNGGYAEYIVVPEKNLFKIPDSISDELAASLPVAALTAYHA 154

Query: 193 AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
             +TA +  G TVV+FG  G+ G+   + A++ GA  I     +S K +  K FG  E V
Sbjct: 155 L-KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVI----AVSRK-DWLKEFGADEVV 208

Query: 252 NSKNCGDKS 260
           +     +K 
Sbjct: 209 DYDEVEEKV 217

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|176237 cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 78/329 (23%), Positives = 120/329 (36%), Gaps = 58/329 (17%)

Query: 18  RAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD----FPAVFP 71
           +A   +  G  + L + E  V  P   EV VR+   SL + D+    + +     P   P
Sbjct: 2   KAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLL---ILNGRYPPPVKDP 58

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            I   +  G V +VGE V     GD V+P F  +                        W+
Sbjct: 59  LIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPN------------------------WL 94

Query: 132 --PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
             P         L G  I         +EY VL    +V+    +    A  L C G++ 
Sbjct: 95  DGPPTAEDEASALGG-PIDGV-----LAEYVVLPEEGLVRAPDHLSFEEAATLPCAGLT- 147

Query: 189 GVGAAWR----TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
               AW        ++ G TV++ G G + L   + A+  GA R+I      EK E  K 
Sbjct: 148 ----AWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKA 202

Query: 245 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 303
            G    +N +   D    + ++ +T G G D+  E  G  +L Q +      G G   ++
Sbjct: 203 LGADHVINYRTTPD--WGEEVLKLTGGRGVDHVVEVGGPGTLAQ-SIKAVAPG-GVISLI 258

Query: 304 GVDQPGSQLSLSSFEVLHSGKILMGSLFG 332
           G    G +  +    +L  G  L G   G
Sbjct: 259 GF-LSGFEAPVLLLPLLTKGATLRGIAVG 286

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 336

>gnl|CDD|177834 PLN02178, PLN02178, cinnamyl-alcohol dehydrogenase

 Score = 67.4 bits (164), Expect = 2e-12
 Identities = 88/341 (25%), Positives = 144/341 (42%), Gaps = 41/341 (12%)

Query: 42  HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IP 100
           ++V V+I+   +CHSD+   K     + +P I GHE +G+   VG+NV    EGD V + 
Sbjct: 32  NDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVG 91

Query: 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD-LRGETIHHFVSVSSFSEY 159
             +  C  C  C     N C    F  +        SR  D  R +          +S+ 
Sbjct: 92  VIIGSCQSCESCNQDLENYCPKVVFTYN--------SRSSDGTRNQ--------GGYSDV 135

Query: 160 TVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAV 217
            V+D   V+ +   +P +  A LL  G++      +     E G  + + GLG +G +AV
Sbjct: 136 IVVDHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAV 195

Query: 218 AEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC 276
             G       R+  +   SEK  E   R G   F+ + +      SQ + +   G  D+ 
Sbjct: 196 KIGKAF--GLRVTVISRSSEKEREAIDRLGADSFLVTTD------SQKMKEAV-GTMDFI 246

Query: 277 FECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA 336
            + V     +   ++  +   GK + LG+  P   L L  F ++   K++ GS  GG+K 
Sbjct: 247 IDTVSAEHALLPLFSLLKVS-GKLVALGL--PEKPLDLPIFPLVLGRKMVGGSQIGGMKE 303

Query: 337 KSD-IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 376
             + +    K  +  ++EL       +K  +INSA D L K
Sbjct: 304 TQEMLEFCAKHKIVSDIEL-------IKMSDINSAMDRLAK 337

Length = 375

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 65.3 bits (160), Expect = 1e-11
 Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPP---NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           +A +   PG   V D   V  P   +  +  VRI  T++C SD+  ++     A    +L
Sbjct: 2   KAVVYGGPGNVAVED---VPDPKIEHPTDAIVRITTTAICGSDLHMYR-GRTGAEPGLVL 57

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCS 121
           GHEA+G VE VG  V+ +  GD VV+P F   C  C  C+     +C 
Sbjct: 58  GHEAMGEVEEVGSAVESLKVGDRVVVP-FNVACGRCRNCKRGLTGVCL 104

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|234025 TIGR02819, fdhA_non_GSH, formaldehyde dehydrogenase, glutathione-independent

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 68/248 (27%), Positives = 102/248 (41%), Gaps = 40/248 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDP--------PNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           R  +   PG+  V D  I  P           H V ++++ T++C SD    + +   A 
Sbjct: 4   RGVVYLGPGKVEVQD--IDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRT-TAP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
              +LGHE  G V   G +V+ +  GD+V   F   C  C  C+     +C      ++P
Sbjct: 61  TGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVC----LNVNP 116

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNR--------- 178
                    + D+ G        V   SEY ++  A  +++K      P+R         
Sbjct: 117 ARAGAAYG-YVDMGG-------WVGGQSEYVMVPYADFNLLKF-----PDRDQALEKIRD 163

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
             +LS    TG   A  TA V  GSTV I G G +GLA A  A+L GA  +I  D+   +
Sbjct: 164 LTMLSDIFPTGYHGAV-TAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPAR 222

Query: 239 FEIGKRFG 246
               + FG
Sbjct: 223 LAQARSFG 230

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent [Central intermediary metabolism, One-carbon metabolism]. Length = 393

>gnl|CDD|132409 TIGR03366, HpnZ_proposed, putative phosphonate catabolism associated alcohol dehydrogenase

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 55/250 (22%), Positives = 87/250 (34%), Gaps = 30/250 (12%)

Query: 73  ILGHEAIGVVESVGENVDGVVE------GDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
           +LGHE +G V ++        +      G  V+      C  C  CR      C      
Sbjct: 1   VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCD----- 55

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCG 185
                     S  K         +     ++E+  L     +V V   +P   A    C 
Sbjct: 56  ----------SLRKYGHEALDSGWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCA 105

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            +T V AA   A    G  V++ G G +GL  A  A   GA R++  D   ++ E+   F
Sbjct: 106 TAT-VMAALEAAGDLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164

Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 304
           G T     +   ++        + +G G D   E  G  + V+        G G  ++ G
Sbjct: 165 GATALAEPEVLAERQGG-----LQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAG 218

Query: 305 VDQPGSQLSL 314
              PG  ++L
Sbjct: 219 SVFPGGPVAL 228

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. Length = 280

>gnl|CDD|176189 cd05286, QOR2, Quinone oxidoreductase (QOR)

 Score = 60.5 bits (148), Expect = 3e-10
 Identities = 66/280 (23%), Positives = 102/280 (36%), Gaps = 82/280 (29%)

Query: 18  RAAIATAPGEPLVI--DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +A      G P V+  ++V V  P   EV VR     +   D  F +   +P   P +LG
Sbjct: 1   KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYF-RSGLYPLPLPFVLG 59

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            E  GVVE+VG  V G   GD V                       A P           
Sbjct: 60  VEGAGVVEAVGPGVTGFKVGDRV---------------------AYAGPP---------- 88

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW- 194
                              +++EY V+  + +VK    +P         G+S    AA  
Sbjct: 89  ------------------GAYAEYRVVPASRLVK----LPD--------GISDETAAALL 118

Query: 195 -----------RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
                       T  V+ G TV++    G +GL + + A+  GA  +IG     EK E+ 
Sbjct: 119 LQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELA 177

Query: 243 KRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVG 281
           +  G    +N +   D+   + + ++T G G D  ++ VG
Sbjct: 178 RAAGADHVINYR---DEDFVERVREITGGRGVDVVYDGVG 214

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone and 1,4-naphthoquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 320

>gnl|CDD|176242 cd08282, PFDH_like, Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TG       A V+ G TV +FG G +GL  A  A L GA+R+  VD + E+ ++ +  G 
Sbjct: 164 TGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGA 222

Query: 248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG 281
              ++     D    + I+ +  GG D   +CVG
Sbjct: 223 -IPIDFS---DGDPVEQILGLEPGGVDRAVDCVG 252

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 375

>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 65/291 (22%), Positives = 94/291 (32%), Gaps = 77/291 (26%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVF 70
           R  + T  G P  L + E  +  P + EV V++  + +  +DV      +      P   
Sbjct: 2   REVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFT- 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P   G++ +G V+++G  V G   GD V                                
Sbjct: 61  P---GYDLVGRVDALGSGVTGFEVGDRVAA------------------------------ 87

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
                                 V   +EY  LD  ++V V   V    A    C V   V
Sbjct: 88  -------------------LTRVGGNAEYINLDAKYLVPVPEGVDAAEA---VCLVLNYV 125

Query: 191 GAAW----RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
             A+    R A V  G  V+I G  G +G A+ E A L GA  + G           +  
Sbjct: 126 -TAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGAE-VYGTAS-ERNHAALREL 182

Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKG 296
           G T          K     ++  T GG D  F+ VG  S  +   A    G
Sbjct: 183 GATPIDYR----TKDWLPAML--TPGGVDVVFDGVGGESYEESYAALAPGG 227

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 331

>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 58.8 bits (143), Expect = 1e-09
 Identities = 57/217 (26%), Positives = 81/217 (37%), Gaps = 50/217 (23%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRI 73
           RA      G P  L I+E+ V  P + EV +R+    L  +D   ++   +  P   P  
Sbjct: 2   RAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADA-MFRRGAYIEPPPLPAR 60

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LG+EA GVVE+VG  V G   GD V                            + P    
Sbjct: 61  LGYEAAGVVEAVGAGVTGFAVGDRVS---------------------------VIPAADL 93

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
            Q                   +++EY ++  A VVK+   +    A  L     T  GA 
Sbjct: 94  GQ-----------------YGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGAL 136

Query: 194 WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI 229
              A +  G +V+I     S+GLA  + A   GAT I
Sbjct: 137 VELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVI 173

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 328

>gnl|CDD|166227 PLN02586, PLN02586, probable cinnamyl alcohol dehydrogenase

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 81/337 (24%), Positives = 132/337 (39%), Gaps = 36/337 (10%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPH 101
           +V V+I+   +CHSD+   K +     +P + GHE +G+V  +G+NV    EGD V +  
Sbjct: 39  DVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGV 98

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            +  C  C  C     N C    F  +  +  D T  +                +S+  V
Sbjct: 99  IVGSCKSCESCDQDLENYCPKMIFTYNS-IGHDGTKNY--------------GGYSDMIV 143

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEG 220
           +D   V++    +P +    L C   T           E G  + + GLG +G +AV  G
Sbjct: 144 VDQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIG 203

Query: 221 ARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV 280
                   +I      E   I  R G   F+ S +      +        G  DY  + V
Sbjct: 204 KAFGLKVTVISSSSNKEDEAI-NRLGADSFLVSTDPEKMKAAI-------GTMDYIIDTV 255

Query: 281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSD- 339
                +       +   GK I LG+  P   L L  F ++   K++ GS  GG+K   + 
Sbjct: 256 SAVHALGPLLGLLKVN-GKLITLGL--PEKPLELPIFPLVLGRKLVGGSDIGGIKETQEM 312

Query: 340 IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 376
           +    K  +  ++EL       ++ +EIN+A + L K
Sbjct: 313 LDFCAKHNITADIEL-------IRMDEINTAMERLAK 342

Length = 360

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 51/219 (23%), Positives = 86/219 (39%), Gaps = 24/219 (10%)

Query: 40  NSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96
           N++   V+I    +C SD+ ++   K+ +F    P +LGHE IG +     +  G+ EG 
Sbjct: 26  NNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSSGLKEGQ 83

Query: 97  VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF 156
            V  +    C  C  C S   N C+   F  S          F  + G           F
Sbjct: 84  TVAINPSKPCGHCKYCLSHNENQCTTMRFFGS-------AMYFPHVDG----------GF 126

Query: 157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA 216
           + Y V+D A  +              +  ++  + AA +  ++  G  V + G+G IG  
Sbjct: 127 TRYKVVDTAQCIPYPEKADEKVMA-FAEPLAVAIHAAHQAGDL-QGKRVFVSGVGPIGCL 184

Query: 217 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN 255
           +    +  GA  I+  DV      + +  G  + VN +N
Sbjct: 185 IVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQN 223

Length = 343

>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 59/290 (20%), Positives = 90/290 (31%), Gaps = 77/290 (26%)

Query: 20  AIATAPGEPLVIDEVIVD----PPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV---FPR 72
            + T  G P V+  + V+     P   EV V++   S+   D    +      +   FP 
Sbjct: 1   VVYTRYGSPEVLLLLEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPP 60

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           I G +  G V +VG  V     GD V            G    KG               
Sbjct: 61  IPGMDFAGEVVAVGSGVTRFKVGDEVF-----------GRLPPKG--------------- 94

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA 192
                      G          + +EY V   + + K    V    A  L     T + A
Sbjct: 95  ----------GG----------ALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQA 134

Query: 193 AWRTANVEVGSTVVIFG----LGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
                 V+ G  V+I G    +G+    +A A GA       + GV   +   E+ +  G
Sbjct: 135 LRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA------HVTGVC-STRNAELVRSLG 187

Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDGGA--DYCFECVGLASLVQEAYACCR 294
             E ++             + +T GG   D  F+ VG +      Y    
Sbjct: 188 ADEVIDYTTED-------FVALTAGGEKYDVIFDAVGNSPF--SLYRASL 228

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 63/273 (23%), Positives = 96/273 (35%), Gaps = 60/273 (21%)

Query: 18  RAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWK--MKDFPAVFPRIL 74
           +A +     +  V D  +  P P   E  VR++   +C++D+  +K         FP + 
Sbjct: 2   KALVLDGGLDLRVED--LPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP-----FPGVP 54

Query: 75  GHEAIGVVESVGEN--VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE +G+VE   E   V   V G++ I      C  C  CR      C           P
Sbjct: 55  GHEFVGIVEEGPEAELVGKRVVGEINIA-----CGRCEYCRRGLYTHC-----------P 98

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST---- 188
                   D  G          +F+EY  L + ++  V   VP  +A      V      
Sbjct: 99  NRTVLGIVDRDG----------AFAEYLTLPLENLHVVPDLVPDEQA------VFAEPLA 142

Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
                     +  G  V + G G +GL +A+   L G   ++ V   SEK  + +R GV 
Sbjct: 143 AALEILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVE 201

Query: 249 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG 281
                      +V     +   GG D   E  G
Sbjct: 202 -----------TVLPDEAESEGGGFDVVVEATG 223

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase (QOR)

 Score = 53.0 bits (128), Expect = 9e-08
 Identities = 52/242 (21%), Positives = 84/242 (34%), Gaps = 59/242 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +A +   PG P  L + E+ +  P    V +R+    L  S++   +       FPR+LG
Sbjct: 2   KAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLG 61

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            EA+G VE           G  V               +  G +   F            
Sbjct: 62  IEAVGEVEEAPGG--TFTPGQRVA--------------TAMGGMGRTFD----------- 94

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                              S++EYT++    V  +D  +       L     T  G+ +R
Sbjct: 95  ------------------GSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLFR 136

Query: 196 TANVEVGSTVVI------FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +  ++ G T++I       GL ++ LA A GA +   TR        E+  + K  G  E
Sbjct: 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTR------SPERAALLKELGADE 190

Query: 250 FV 251
            V
Sbjct: 191 VV 192

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 320

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 62/272 (22%), Positives = 101/272 (37%), Gaps = 65/272 (23%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           RA      G P  L + ++ V  P   EV VR+  + +   D                + 
Sbjct: 2   RAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVP 61

Query: 76  H-EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             +  GVVE+VGE VDG+  GD V   +L +    +G   ++G                 
Sbjct: 62  GSDGAGVVEAVGEGVDGLKVGDRV---WLTN----LGWGRRQG----------------- 97

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA-- 192
                               + +EY V+    +V +   V          G + G+ A  
Sbjct: 98  --------------------TAAEYVVVPADQLVPLPDGVSF------EQGAALGIPALT 131

Query: 193 AWRT----ANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           A+R     A  + G TV++ G  G++G A  + AR  GA R+I     +E  E+ ++ G 
Sbjct: 132 AYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGA 190

Query: 248 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFE 278
               N +    + ++  I+  T G G D   E
Sbjct: 191 DAVFNYR---AEDLADRILAATAGQGVDVIIE 219

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

>gnl|CDD|166155 PLN02514, PLN02514, cinnamyl-alcohol dehydrogenase

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 84/342 (24%), Positives = 143/342 (41%), Gaps = 46/342 (13%)

Query: 43  EVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV-IPH 101
           +V +++I   +CH+D+   K     + +P + GHE +G V  VG +V     GD+V +  
Sbjct: 36  DVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGV 95

Query: 102 FLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTV 161
            +  C EC  C+S     C+    +I  W   D  +  K  +G           F+   V
Sbjct: 96  IVGCCGECSPCKSDLEQYCNK---RI--WSYNDVYTDGKPTQG----------GFASAMV 140

Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 221
           +D   VVK+   + P +A  L C   T           + G    I GLG +G    + A
Sbjct: 141 VDQKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIA 200

Query: 222 RLCGATRIIGVDVIS----EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG--ADY 275
           +  G      V VIS    ++ E  +  G  +++         VS    +M +     DY
Sbjct: 201 KAMGHH----VTVISSSDKKREEALEHLGADDYL---------VSSDAAEMQEAADSLDY 247

Query: 276 CFECVGLASLVQEAYACCRKGWGKTIVLGV-DQPGSQLSLSSFEVLHSGKILMGSLFGGL 334
             + V +   + E Y    K  GK I++GV + P   L   +  ++   K++ GS  G +
Sbjct: 248 IIDTVPVFHPL-EPYLSLLKLDGKLILMGVINTP---LQFVTPMLMLGRKVITGSFIGSM 303

Query: 335 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 376
           K   ++   L+   +K L     +   +K + +N+AF+ L K
Sbjct: 304 KETEEM---LEFCKEKGL---TSMIEVVKMDYVNTAFERLEK 339

Length = 357

>gnl|CDD|176252 cd08292, ETR_like_2, 2-enoyl thioester reductase (ETR) like proteins, child 2

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 8/87 (9%)

Query: 18 RAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFP 71
          RAA+ T  G+P   L I EV    P + EV VR   + + + D+  W ++    +    P
Sbjct: 2  RAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDL--WTIRGTYGYKPELP 59

Query: 72 RILGHEAIGVVESVGENVDGVVEGDVV 98
           I G EA+GVV++VGE V G+  G  V
Sbjct: 60 AIGGSEAVGVVDAVGEGVKGLQVGQRV 86

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|176250 cd08290, ETR, 2-enoyl thioester reductase (ETR)

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 17  CRAAIATAPGEPL----VIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFP 67
            +A + T  GEP     +    I  P   +EV V+++   +  +D+      +       
Sbjct: 1   AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTT 60

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPH 101
              P + G+E +G V  VG  V  +  GD VIP 
Sbjct: 61  PEPPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPL 94

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 341

>gnl|CDD|176645 cd05282, ETR_like, 2-enoyl thioester reductase-like

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 7/87 (8%)

Query: 20  AIATAPGEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRI 73
            + T  GEP    L +  + + PP   EV VR++   +  SD+          P   P +
Sbjct: 1   VVYTQFGEPLPLVLELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPP-LPAV 59

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIP 100
            G+E +GVV  VG  V G++ G  V+P
Sbjct: 60  PGNEGVGVVVEVGSGVSGLLVGQRVLP 86

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 323

>gnl|CDD|225041 COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only]

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 10/136 (7%)

Query: 151 VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVI 207
           V VS + EY + D   + K+DP+  P  A L   G+  G+ A +        + G TVV+
Sbjct: 98  VGVSGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM-PGLTAYFGLLDIGQPKAGETVVV 156

Query: 208 FGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTEFVNSKNCGDKSVSQII 265
               G++G  V + A+L G  R++G+   +EK +      G    ++ K    +  +Q +
Sbjct: 157 SAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYK---AEDFAQAL 212

Query: 266 IDMTDGGADYCFECVG 281
            +    G D  FE VG
Sbjct: 213 KEACPKGIDVYFENVG 228

Length = 340

>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 40/170 (23%), Positives = 59/170 (34%), Gaps = 32/170 (18%)

Query: 61  WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC 120
                    FPRI G + +G V +VGE VD    G+ V+                     
Sbjct: 68  AGWWGGTLSFPRIQGADIVGRVVAVGEGVDTARIGERVL--------------------- 106

Query: 121 SAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC 180
                 + P +         D+    I        F+EYTV+   +   V+  +      
Sbjct: 107 ------VDPSIRDPPEDDPADID--YIGSERD-GGFAEYTVVPAENAYPVNSPLSDVELA 157

Query: 181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRI 229
              C  ST      R A V  G TV++ G  G +G A+ + A+  GA  I
Sbjct: 158 TFPCSYSTAENMLER-AGVGAGETVLVTGASGGVGSALVQLAKRRGAIVI 206

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 350

>gnl|CDD|176251 cd08291, ETR_like_1, 2-enoyl thioester reductase (ETR) like proteins, child 1

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 18 RAAIATAPGEPLVIDEVIVDP-----PNSHEVRVRIICTSLCHSDVTFWKMK---DFPAV 69
          +A +    G+PL + E+ +       P   EV +++    +  SD+ F  +K        
Sbjct: 2  KALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGF--LKGQYGSTKA 59

Query: 70 FPRILGHEAIGVVESVGENVDG 91
           P   G E  G V + G     
Sbjct: 60 LPVPPGFEGSGTVVAAGGGPLA 81

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Candida tropicalis enoyl thioester reductase (Etr1p) catalyzes the NADPH-dependent reduction of trans-2-enoyl thioesters in mitochondrial fatty acid synthesis. Etr1p forms homodimers, with each subunit containing a nucleotide-binding Rossmann fold domain and a catalytic domain. Length = 324

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 41.0 bits (97), Expect = 7e-04
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGV 232
           G TV+I GLG IG  +A  A+  G  R+IGV
Sbjct: 134 GKTVLIVGLGDIGREIARRAKAFGM-RVIGV 163

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|176200 cd08238, sorbose_phosphate_red, L-sorbose-1-phosphate reductase

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 38 PPNSHEVRVRIICTSLCHSDVTFWKM-KDFPAVF------PRILGHEAIGVVESVGENVD 90
               E+ VR+I  SLC S         D   V       P ILGHE  G +  VG+   
Sbjct: 23 EIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGKKWQ 82

Query: 91 G 91
          G
Sbjct: 83 G 83

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 410

>gnl|CDD|131869 TIGR02822, adh_fam_2, zinc-binding alcohol dehydrogenase family protein

 Score = 40.7 bits (95), Expect = 0.001
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 28  PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL-GHEAIGVVESVG 86
           PL   E  V  P   E+ VR+    +C +D+   +  D P   PR+  GHE +G V   G
Sbjct: 14  PLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSE-GDLPVHRPRVTPGHEVVGEVAGRG 72

Query: 87  ENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSA 122
            +  G   GD V I      C  C  CR    NLC A
Sbjct: 73  ADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPA 109

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized [Energy metabolism, Fermentation]. Length = 329

>gnl|CDD|176212 cd08250, Mgc45594_like, Mgc45594 gene product and other MDR family members

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 58/245 (23%), Positives = 84/245 (34%), Gaps = 58/245 (23%)

Query: 39  PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI-LGHEAIGVVESVGENVDGVVEGDV 97
           P   EV V+     +  SD+ F   +  P V P    G E +G V +VGE V     GD 
Sbjct: 28  PGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVTDFKVGDA 87

Query: 98  VIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS 157
           V                                                    +S  +F+
Sbjct: 88  VA--------------------------------------------------TMSFGAFA 97

Query: 158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV-VIFGLGSIGLA 216
           EY V+   H V V P + P    LL  G++  + A      ++ G TV V    G  G  
Sbjct: 98  EYQVVPARHAVPV-PELKPEVLPLLVSGLTASI-ALEEVGEMKSGETVLVTAAAGGTGQF 155

Query: 217 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC 276
             + A+L G   +IG     EK E  K  G    +N K    + + +++      G D  
Sbjct: 156 AVQLAKLAGCH-VIGTCSSDEKAEFLKSLGCDRPINYKT---EDLGEVLKKEYPKGVDVV 211

Query: 277 FECVG 281
           +E VG
Sbjct: 212 YESVG 216

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. Length = 329

>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase

 Score = 39.3 bits (93), Expect = 0.002
 Identities = 28/85 (32%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 18 RAAIATAPGEP--LVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRI 73
          +A +   PG P  L + EV   P P   EV +R+    +  +D+   +     P     I
Sbjct: 2  KAIVIKEPGGPEVLELGEV-PKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDI 60

Query: 74 LGHEAIGVVESVGENVDGVVEGDVV 98
          LG E  GVV +VG  V G   GD V
Sbjct: 61 LGLEVAGVVVAVGPGVTGWKVGDRV 85

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 323

>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 26/88 (29%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR--- 72
          RA      G    L I E     P  ++V +++    +  +D    + K  P   P    
Sbjct: 3  RAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPP---PPGSS 59

Query: 73 -ILGHEAIGVVESVGENVDGVVEGDVVI 99
           ILG E  G VE VG +V    EGD V+
Sbjct: 60 EILGLEVAGYVEDVGSDVKRFKEGDRVM 87

Length = 334

>gnl|CDD|176214 cd08252, AL_MDR, Arginate lyase and other MDR family members

 Score = 39.0 bits (92), Expect = 0.002
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 31 IDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV 89
          ID  +  P P   ++ VR+   S+   D             P+ILG +A GVVE+VG  V
Sbjct: 19 IDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEV 78

Query: 90 DGVVEGDVV 98
               GD V
Sbjct: 79 TLFKVGDEV 87

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 336

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	388
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	100.0
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	100.0
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	100.0
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	100.0
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	100.0
PLN02740	381	Alcohol dehydrogenase-like	100.0
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	100.0
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	100.0
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	100.0
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	100.0
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	100.0
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	100.0
PLN02827	378	Alcohol dehydrogenase-like	100.0
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	100.0
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	100.0
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	100.0
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	100.0
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	100.0
PLN02586	360	probable cinnamyl alcohol dehydrogenase	100.0
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	100.0
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	100.0
PLN02178	375	cinnamyl-alcohol dehydrogenase	100.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	100.0
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	100.0
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	100.0
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	100.0
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	100.0
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	100.0
PLN02514	357	cinnamyl-alcohol dehydrogenase	100.0
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	100.0
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	100.0
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	100.0
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	100.0
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	100.0
PRK10083	339	putative oxidoreductase; Provisional	100.0
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	100.0
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	100.0
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	100.0
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	100.0
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	100.0
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	100.0
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	100.0
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	100.0
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	100.0
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	100.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	100.0
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	100.0
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	100.0
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	100.0
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	100.0
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	100.0
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	100.0
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	100.0
PRK13771	334	putative alcohol dehydrogenase; Provisional	100.0
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	100.0
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	100.0
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	100.0
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	100.0
PLN02702	364	L-idonate 5-dehydrogenase	100.0
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	100.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	100.0
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	100.0
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	100.0
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	100.0
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	100.0
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	100.0
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	100.0
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	100.0
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	100.0
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	100.0
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	100.0
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	100.0
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	100.0
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	100.0
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	100.0
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	100.0
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	100.0
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	100.0
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	100.0
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	100.0
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	100.0
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	100.0
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	100.0
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	100.0
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	100.0
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	100.0
PTZ00354	334	alcohol dehydrogenase; Provisional	100.0
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	100.0
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	100.0
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	100.0
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	100.0
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	100.0
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	100.0
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	100.0
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	100.0
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	100.0
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08252	336	AL_MDR Arginate lyase and other MDR family members	100.0
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	100.0
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	100.0
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	100.0
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	100.0
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	100.0
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	100.0
COG2130	340	Putative NADP-dependent oxidoreductases [General f	100.0
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	100.0
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	100.0
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	100.0
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	100.0
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	100.0
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	100.0
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	100.0
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	100.0
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	99.98
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	99.98
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	99.97
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	99.96
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	99.95
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	99.95
PF08240	109	ADH_N: Alcohol dehydrogenase GroES-like domain; In	99.91
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.76
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.53
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	99.38
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.28
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.55
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.48
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.4
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	98.33
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.26
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.14
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	98.13
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.07
PF11017	314	DUF2855: Protein of unknown function (DUF2855); In	97.98
PLN02494	477	adenosylhomocysteinase	97.97
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	97.96
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.82
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.77
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.74
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.68
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.64
PRK08324	681	short chain dehydrogenase; Validated	97.63
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.53
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	97.34
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.23
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	97.19
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	97.17
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.02
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	96.99
TIGR00438	188	rrmJ cell division protein FtsJ.	96.99
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	96.97
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.9
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	96.88
COG0300	265	DltE Short-chain dehydrogenases of various substra	96.82
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.81
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	96.8
PRK05993	277	short chain dehydrogenase; Provisional	96.8
PRK05693	274	short chain dehydrogenase; Provisional	96.76
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	96.73
PRK12742	237	oxidoreductase; Provisional	96.72
PRK14967	223	putative methyltransferase; Provisional	96.7
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	96.68
PRK04148	134	hypothetical protein; Provisional	96.65
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	96.61
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	96.61
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.6
PRK08177	225	short chain dehydrogenase; Provisional	96.58
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	96.57
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	96.56
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	96.55
PRK08017	256	oxidoreductase; Provisional	96.53
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.52
PLN03209	576	translocon at the inner envelope of chloroplast su	96.5
PRK07326	237	short chain dehydrogenase; Provisional	96.48
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.47
COG2910	211	Putative NADH-flavin reductase [General function p	96.46
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.44
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.43
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.42
PRK06182	273	short chain dehydrogenase; Validated	96.41
PRK06949	258	short chain dehydrogenase; Provisional	96.38
PRK07060	245	short chain dehydrogenase; Provisional	96.37
PRK07806	248	short chain dehydrogenase; Provisional	96.34
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.34
PRK06139	330	short chain dehydrogenase; Provisional	96.33
PRK07109	334	short chain dehydrogenase; Provisional	96.31
PRK12829	264	short chain dehydrogenase; Provisional	96.28
PRK06057	255	short chain dehydrogenase; Provisional	96.27
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	96.26
PRK12939	250	short chain dehydrogenase; Provisional	96.24
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.24
PRK08618	325	ornithine cyclodeaminase; Validated	96.22
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.21
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.21
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.21
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	96.19
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.15
PRK08265	261	short chain dehydrogenase; Provisional	96.15
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.15
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	96.14
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.14
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.14
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.1
PRK06841	255	short chain dehydrogenase; Provisional	96.08
PRK05872	296	short chain dehydrogenase; Provisional	96.03
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.03
PRK07831	262	short chain dehydrogenase; Provisional	96.01
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.01
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	95.99
PRK07825	273	short chain dehydrogenase; Provisional	95.98
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.97
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.96
PRK07814	263	short chain dehydrogenase; Provisional	95.95
PRK15116	268	sulfur acceptor protein CsdL; Provisional	95.94
PRK07402	196	precorrin-6B methylase; Provisional	95.93
PRK05866	293	short chain dehydrogenase; Provisional	95.9
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	95.89
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	95.87
PRK12828	239	short chain dehydrogenase; Provisional	95.87
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.87
PRK07574	385	formate dehydrogenase; Provisional	95.87
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.86
PRK06500	249	short chain dehydrogenase; Provisional	95.86
PRK00536	262	speE spermidine synthase; Provisional	95.83
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	95.83
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.79
PRK06953	222	short chain dehydrogenase; Provisional	95.78
PRK07677	252	short chain dehydrogenase; Provisional	95.78
PRK06180	277	short chain dehydrogenase; Provisional	95.77
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.76
PRK09291	257	short chain dehydrogenase; Provisional	95.76
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	95.75
PF02670	129	DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate re	95.75
PRK05867	253	short chain dehydrogenase; Provisional	95.74
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.74
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.72
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	95.72
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	95.71
PRK06128	300	oxidoreductase; Provisional	95.7
PRK06196	315	oxidoreductase; Provisional	95.69
PRK08339	263	short chain dehydrogenase; Provisional	95.68
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	95.64
PRK06484	520	short chain dehydrogenase; Validated	95.61
CHL00194	317	ycf39 Ycf39; Provisional	95.6
PRK05717	255	oxidoreductase; Validated	95.6
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.58
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	95.58
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	95.56
PLN03139	386	formate dehydrogenase; Provisional	95.55
PRK07478	254	short chain dehydrogenase; Provisional	95.55
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.53
PRK07340	304	ornithine cyclodeaminase; Validated	95.52
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.51
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	95.49
PRK07904	253	short chain dehydrogenase; Provisional	95.48
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.47
PRK07774	250	short chain dehydrogenase; Provisional	95.47
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.46
PRK07062	265	short chain dehydrogenase; Provisional	95.46
PRK07523	255	gluconate 5-dehydrogenase; Provisional	95.45
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.44
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.44
PLN02780	320	ketoreductase/ oxidoreductase	95.41
PRK07576	264	short chain dehydrogenase; Provisional	95.41
COG4122	219	Predicted O-methyltransferase [General function pr	95.4
PRK06194	287	hypothetical protein; Provisional	95.4
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	95.39
PRK05875	276	short chain dehydrogenase; Provisional	95.39
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.38
PRK08628	258	short chain dehydrogenase; Provisional	95.35
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	95.35
PRK05884	223	short chain dehydrogenase; Provisional	95.34
PLN02366	308	spermidine synthase	95.34
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.33
PRK08643	256	acetoin reductase; Validated	95.32
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.31
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.29
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.28
PRK07035	252	short chain dehydrogenase; Provisional	95.28
PRK06198	260	short chain dehydrogenase; Provisional	95.28
PRK06172	253	short chain dehydrogenase; Provisional	95.28
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	95.27
PRK11207	197	tellurite resistance protein TehB; Provisional	95.26
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	95.25
PRK07890	258	short chain dehydrogenase; Provisional	95.24
PRK06138	252	short chain dehydrogenase; Provisional	95.24
PRK06181	263	short chain dehydrogenase; Provisional	95.23
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	95.23
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.23
PRK07063	260	short chain dehydrogenase; Provisional	95.22
PRK07454	241	short chain dehydrogenase; Provisional	95.21
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.21
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	95.2
PRK12367	245	short chain dehydrogenase; Provisional	95.18
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.17
PRK09072	263	short chain dehydrogenase; Provisional	95.17
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.17
PRK08703	239	short chain dehydrogenase; Provisional	95.17
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	95.15
PRK06179	270	short chain dehydrogenase; Provisional	95.14
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	95.12
PRK05876	275	short chain dehydrogenase; Provisional	95.11
PRK06101	240	short chain dehydrogenase; Provisional	95.1
PRK08267	260	short chain dehydrogenase; Provisional	95.1
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	95.09
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.08
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.07
PRK06914	280	short chain dehydrogenase; Provisional	95.07
PLN00203	519	glutamyl-tRNA reductase	95.07
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	95.07
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	95.05
PRK00811	283	spermidine synthase; Provisional	95.05
PRK08263	275	short chain dehydrogenase; Provisional	95.04
PRK06483	236	dihydromonapterin reductase; Provisional	95.03
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	95.03
PRK08264	238	short chain dehydrogenase; Validated	95.03
PF13823	23	ADH_N_assoc: Alcohol dehydrogenase GroES-associate	95.02
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.01
PRK06482	276	short chain dehydrogenase; Provisional	95.0
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	94.99
PRK07067	257	sorbitol dehydrogenase; Provisional	94.99
PRK05854	313	short chain dehydrogenase; Provisional	94.99
PRK06114	254	short chain dehydrogenase; Provisional	94.98
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	94.98
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	94.97
PRK08085	254	gluconate 5-dehydrogenase; Provisional	94.97
PRK08277	278	D-mannonate oxidoreductase; Provisional	94.97
PRK08589	272	short chain dehydrogenase; Validated	94.96
PRK06197	306	short chain dehydrogenase; Provisional	94.96
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	94.95
PRK07832	272	short chain dehydrogenase; Provisional	94.94
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.94
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	94.94
PRK06125	259	short chain dehydrogenase; Provisional	94.93
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	94.93
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.92
PRK07024	257	short chain dehydrogenase; Provisional	94.9
PRK09186	256	flagellin modification protein A; Provisional	94.9
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.89
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.87
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	94.86
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	94.85
PRK08226	263	short chain dehydrogenase; Provisional	94.84
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	94.84
COG0569	225	TrkA K+ transport systems, NAD-binding component [	94.84
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	94.84
PRK08862	227	short chain dehydrogenase; Provisional	94.83
PRK06141	314	ornithine cyclodeaminase; Validated	94.82
PRK07453	322	protochlorophyllide oxidoreductase; Validated	94.82
PRK12937	245	short chain dehydrogenase; Provisional	94.82
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	94.8
PLN02253	280	xanthoxin dehydrogenase	94.8
PRK08251	248	short chain dehydrogenase; Provisional	94.8
PRK09242	257	tropinone reductase; Provisional	94.79
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	94.79
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.79
PRK07856	252	short chain dehydrogenase; Provisional	94.79
PRK06398	258	aldose dehydrogenase; Validated	94.72
PRK07985	294	oxidoreductase; Provisional	94.71
PRK10538	248	malonic semialdehyde reductase; Provisional	94.71
PRK13243	333	glyoxylate reductase; Reviewed	94.69
PRK08317	241	hypothetical protein; Provisional	94.66
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	94.66
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	94.65
PRK06720	169	hypothetical protein; Provisional	94.65
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	94.64
PRK07417	279	arogenate dehydrogenase; Reviewed	94.63
PRK07074	257	short chain dehydrogenase; Provisional	94.62
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.6
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.59
PRK08328	231	hypothetical protein; Provisional	94.59
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	94.58
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	94.58
PLN02256	304	arogenate dehydrogenase	94.51
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	94.51
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	94.51
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	94.48
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	94.47
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	94.46
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.44
PRK06849	389	hypothetical protein; Provisional	94.43
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.43
PRK07577	234	short chain dehydrogenase; Provisional	94.43
PRK06124	256	gluconate 5-dehydrogenase; Provisional	94.42
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.42
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	94.41
PRK05562	223	precorrin-2 dehydrogenase; Provisional	94.37
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.34
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.34
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	94.33
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.32
PRK06484	520	short chain dehydrogenase; Validated	94.32
PLN03075	296	nicotianamine synthase; Provisional	94.31
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	94.31
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.3
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	94.3
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.28
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.27
PLN02928	347	oxidoreductase family protein	94.27
COG0673	342	MviM Predicted dehydrogenases and related proteins	94.26
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.25
PRK07791	286	short chain dehydrogenase; Provisional	94.25
PRK08278	273	short chain dehydrogenase; Provisional	94.25
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	94.25
PRK04457	262	spermidine synthase; Provisional	94.24
PRK12743	256	oxidoreductase; Provisional	94.24
PRK06940	275	short chain dehydrogenase; Provisional	94.23
PRK07097	265	gluconate 5-dehydrogenase; Provisional	94.19
PRK10669	558	putative cation:proton antiport protein; Provision	94.16
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	94.15
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	94.14
PRK07102	243	short chain dehydrogenase; Provisional	94.12
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	94.11
PRK08303	305	short chain dehydrogenase; Provisional	94.09
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.08
PLN00016	378	RNA-binding protein; Provisional	94.08
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.08
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	94.07
PRK01581	374	speE spermidine synthase; Validated	94.06
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.02
PRK05650	270	short chain dehydrogenase; Provisional	93.99
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	93.99
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	93.98
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	93.97
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	93.96
PRK08219	227	short chain dehydrogenase; Provisional	93.91
KOG0725	270	consensus Reductases with broad range of substrate	93.9
PLN02476	278	O-methyltransferase	93.89
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	93.88
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.86
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	93.85
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	93.85
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	93.84
PRK07775	274	short chain dehydrogenase; Provisional	93.83
PRK06523	260	short chain dehydrogenase; Provisional	93.81
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	93.78
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	93.75
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	93.74
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	93.73
PRK06701	290	short chain dehydrogenase; Provisional	93.72
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	93.71
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.7
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.68
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	93.66
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	93.66
PRK05447	385	1-deoxy-D-xylulose 5-phosphate reductoisomerase; P	93.65
PRK10258	251	biotin biosynthesis protein BioC; Provisional	93.65
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	93.63
KOG1252	362	consensus Cystathionine beta-synthase and related	93.63
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	93.58
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	93.56
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.55
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	93.54
PRK14903	431	16S rRNA methyltransferase B; Provisional	93.54
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	93.53
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	93.52
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	93.5
PRK04266	226	fibrillarin; Provisional	93.47
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.47
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	93.43
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	93.42
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	93.41
PRK13984	604	putative oxidoreductase; Provisional	93.4
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	93.36
PRK12938	246	acetyacetyl-CoA reductase; Provisional	93.35
PRK08655	437	prephenate dehydrogenase; Provisional	93.35
PRK09135	249	pteridine reductase; Provisional	93.33
PLN02735	1102	carbamoyl-phosphate synthase	93.31
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	93.31
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	93.31
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	93.28
PRK13403	335	ketol-acid reductoisomerase; Provisional	93.28
PLN02823	336	spermine synthase	93.25
PLN02653	340	GDP-mannose 4,6-dehydratase	93.24
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	93.24
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	93.23
PRK12480	330	D-lactate dehydrogenase; Provisional	93.21
KOG2018	430	consensus Predicted dinucleotide-utilizing enzyme	93.2
PLN02589	247	caffeoyl-CoA O-methyltransferase	93.18
PRK08936	261	glucose-1-dehydrogenase; Provisional	93.16
TIGR02415	254	23BDH acetoin reductases. One member of this famil	93.16
PLN02244	340	tocopherol O-methyltransferase	93.15
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	93.05
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	93.04
PLN02896	353	cinnamyl-alcohol dehydrogenase	93.02
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	93.0
PRK06046	326	alanine dehydrogenase; Validated	92.99
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	92.98
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	92.95
PRK06932	314	glycerate dehydrogenase; Provisional	92.91
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	92.9
PRK12814	652	putative NADPH-dependent glutamate synthase small	92.9
PRK06436	303	glycerate dehydrogenase; Provisional	92.9
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	92.9

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=100.00  E-value=1.1e-67  Score=480.19  Aligned_cols=336  Identities=29%  Similarity=0.465  Sum_probs=309.7

Q ss_pred             CcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCC
Q 016507           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      +++|||+++.++++|+++.+++.|+|+++||+|||+|||+|++|++.++|..+...+|.+||||++|+|+++|++|++|+
T Consensus         1 ~~~mkA~~~~~~~~pl~i~e~~~p~p~~~eVlI~v~~~GVChsDlH~~~G~~~~~~~P~ipGHEivG~V~~vG~~V~~~k   80 (339)
T COG1064           1 MMTMKAAVLKKFGQPLEIEEVPVPEPGPGEVLIKVEACGVCHTDLHVAKGDWPVPKLPLIPGHEIVGTVVEVGEGVTGLK   80 (339)
T ss_pred             CcceEEEEEccCCCCceEEeccCCCCCCCeEEEEEEEEeecchhhhhhcCCCCCCCCCccCCcceEEEEEEecCCCccCC
Confidence            46899999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             CCCEEee-cCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCC
Q 016507           94 EGDVVIP-HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (388)
Q Consensus        94 vGd~V~~-~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~  172 (388)
                      +||||.+ ++..+|+.|.+|++|++++|++...   .|++.+|                   +||||+++++++++++|+
T Consensus        81 ~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~---~gy~~~G-------------------Gyaeyv~v~~~~~~~iP~  138 (339)
T COG1064          81 VGDRVGVGWLVISCGECEYCRSGNENLCPNQKI---TGYTTDG-------------------GYAEYVVVPARYVVKIPE  138 (339)
T ss_pred             CCCEEEecCccCCCCCCccccCcccccCCCccc---cceeecC-------------------cceeEEEEchHHeEECCC
Confidence            9999988 8899999999999999999999776   7888887                   999999999999999999


Q ss_pred             CCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      ++++++||.+.|+..|+|.++ +..+++||++|+|+|+|++|++++|+|+++|+ +|++++++++|+++++++|++++++
T Consensus       139 ~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~lGAd~~i~  216 (339)
T COG1064         139 GLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKLGADHVIN  216 (339)
T ss_pred             CCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHhCCcEEEE
Confidence            999999999999999999976 55999999999999999999999999999998 9999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          253 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      .++   .+..+.+++    .+|++||+++ ...+..+++.|+++ |+++.+|.........++.+.++.+++++.|+..+
T Consensus       217 ~~~---~~~~~~~~~----~~d~ii~tv~-~~~~~~~l~~l~~~-G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g  287 (339)
T COG1064         217 SSD---SDALEAVKE----IADAIIDTVG-PATLEPSLKALRRG-GTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVG  287 (339)
T ss_pred             cCC---chhhHHhHh----hCcEEEECCC-hhhHHHHHHHHhcC-CEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecC
Confidence            776   666666665    3999999999 87799999999998 99999998542344568888899999999999877


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      +   +.++++++++..+|++.+.  +.+.++++|+++|++.|++++. +|+||.+.
T Consensus       288 ~---~~d~~e~l~f~~~g~Ikp~--i~e~~~l~~in~A~~~m~~g~v~gR~Vi~~~  338 (339)
T COG1064         288 T---RADLEEALDFAAEGKIKPE--ILETIPLDEINEAYERMEKGKVRGRAVIDMS  338 (339)
T ss_pred             C---HHHHHHHHHHHHhCCceee--EEeeECHHHHHHHHHHHHcCCeeeEEEecCC
Confidence            6   4799999999999976664  5579999999999999999886 59999875

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=100.00  E-value=3.7e-67  Score=465.94  Aligned_cols=365  Identities=45%  Similarity=0.786  Sum_probs=349.4

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      |++||.+..++++||+++++.+++|+++|||||+.|+|+|++|+...+|.+|.. +|.++|||++|+|++||++|+++++
T Consensus         1 mk~~aAV~~~~~~Pl~i~ei~l~~P~~gEVlVri~AtGVCHTD~~~~~G~~p~~-~P~vLGHEgAGiVe~VG~gVt~vkp   79 (366)
T COG1062           1 MKTRAAVAREAGKPLEIEEVDLDPPRAGEVLVRITATGVCHTDAHTLSGDDPEG-FPAVLGHEGAGIVEAVGEGVTSVKP   79 (366)
T ss_pred             CCceEeeeecCCCCeEEEEEecCCCCCCeEEEEEEEeeccccchhhhcCCCCCC-CceecccccccEEEEecCCccccCC
Confidence            578999999999999999999999999999999999999999999999998876 9999999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||+|+..++..|++|.+|++|+.++|.........|...+|..|++ .++.+.++.++.++|++|.++++..+++++++.
T Consensus        80 GDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~m~dGttrls-~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~  158 (366)
T COG1062          80 GDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGTMPDGTTRLS-GNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDA  158 (366)
T ss_pred             CCEEEEcccCCCCCCchhhCCCcccccchhhhcccccccCCceeee-cCCcceeeeeccccchhheeecccceEECCCCC
Confidence            9999999999999999999999999998887777888899999999 899999999999999999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      +++.++++.|...|.+.++...+++++|++|.|.|-|.+|++++|-|+..|+.+|++++.+++|++++++||+++++|.+
T Consensus       159 p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~  238 (366)
T COG1062         159 PLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPK  238 (366)
T ss_pred             CccceEEEeeeeccChHHhhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCc-cHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          255 NCGDK-SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       255 ~~~~~-~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      +   . +..+.+.++|++++|++|||+|....++.++.+..+ ||+.+.+|.......+++++.+++.. ..|.|++++.
T Consensus       239 ~---~~~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~-~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~  313 (366)
T COG1062         239 E---VDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHR-GGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGG  313 (366)
T ss_pred             h---hhhHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhc-CCeEEEEecCCCCceeecChHHeecc-ceEEEEeecC
Confidence            7   4 699999999999999999999999999999999999 59999999988888888999998885 9999999998


Q ss_pred             CCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          334 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      -..+.+++++++++++|+++++++++++++|+|+++||+.|.+++..|.||.+
T Consensus       314 ~~p~~diP~lv~~y~~Gkl~~d~lvt~~~~Le~INeaf~~m~~G~~IR~Vi~~  366 (366)
T COG1062         314 ARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLEDINEAFDLMHEGKSIRSVIRF  366 (366)
T ss_pred             CccccchhHHHHHHHcCCCchhHHhhccccHHHHHHHHHHHhCCceeeEEecC
Confidence            88889999999999999999999999999999999999999999999988864

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.1e-65  Score=446.12  Aligned_cols=373  Identities=55%  Similarity=0.972  Sum_probs=354.4

Q ss_pred             CCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCC
Q 016507           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      +.++.+|||.+..++++||.++++.+++|+.+||+||++|+++|++|...++|..+...||.++|||++|+|+++|++|+
T Consensus         2 ~gkvI~CKAAV~w~a~~PL~IEei~V~pPka~EVRIKI~~t~vCHTD~~~~~g~~~~~~fP~IlGHEaaGIVESvGegV~   81 (375)
T KOG0022|consen    2 AGKVITCKAAVAWEAGKPLVIEEIEVAPPKAHEVRIKILATGVCHTDAYVWSGKDPEGLFPVILGHEAAGIVESVGEGVT   81 (375)
T ss_pred             CCCceEEeEeeeccCCCCeeEEEEEeCCCCCceEEEEEEEEeeccccceeecCCCccccCceEecccceeEEEEecCCcc
Confidence            45788999999999999999999999999999999999999999999999999987788999999999999999999999


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      .+++||+|+..+...|+.|.+|+++..|.|.........+.+ .||..||+ -+|.+++++.+..+|+||.+++...+.+
T Consensus        82 ~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~-~~gk~iyHfmg~StFsEYTVv~~~~v~k  160 (375)
T KOG0022|consen   82 TVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFT-CKGKPIYHFMGTSTFSEYTVVDDISVAK  160 (375)
T ss_pred             ccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeee-eCCCceEEecccccceeEEEeecceeEe
Confidence            999999999999999999999999999999998887655555 59999999 8899999999999999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +++..+++.++++.|...|+|.+++..+++++|++|.|.|-|++|+++++-||+.|+.+||++|.+++|.+.++++|+++
T Consensus       161 Id~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe  240 (375)
T KOG0022|consen  161 IDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATE  240 (375)
T ss_pred             cCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcce
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      .+|+.+. .....+.+++.|++|+|+-|||+|....+.+++.+...+||.-+.+|.....+.+++.++.++. +..+.|+
T Consensus       241 ~iNp~d~-~~~i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~-GR~~~Gs  318 (375)
T KOG0022|consen  241 FINPKDL-KKPIQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVT-GRTWKGS  318 (375)
T ss_pred             ecChhhc-cccHHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhcc-ccEEEEE
Confidence            9998852 2358899999999999999999999999999999999999999999998888888999888877 9999999


Q ss_pred             eecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          330 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      .++.++.+.+++.+++.+.+++++++.+|+|++||+++++||+.|.++...|.||.+
T Consensus       319 ~FGG~K~~~~iP~lV~~y~~~~l~ld~~ITh~l~f~~In~AF~ll~~GksiR~vl~~  375 (375)
T KOG0022|consen  319 AFGGFKSKSDIPKLVKDYMKKKLNLDEFITHELPFEEINKAFDLLHEGKSIRCVLWM  375 (375)
T ss_pred             ecccccchhhhhHHHHHHHhCccchhhhhhcccCHHHHHHHHHHHhCCceEEEEEeC
Confidence            999999999999999999999999999999999999999999999999999998864

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.1e-61  Score=427.14  Aligned_cols=343  Identities=26%  Similarity=0.452  Sum_probs=303.6

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCC-CCCeEEEEEceeccCcccccccccCCCC---CCCCcccccceeEEEEEecCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      .+|+|+++.++++ ++++++|.|++ .|+||+|++.++|||+||+|.|......   .+.|+++|||.+|+|+++|+.|+
T Consensus         3 ~~~~A~vl~g~~d-i~i~~~p~p~i~~p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~Vk   81 (354)
T KOG0024|consen    3 ADNLALVLRGKGD-IRIEQRPIPTITDPDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEVK   81 (354)
T ss_pred             cccceeEEEccCc-eeEeeCCCCCCCCCCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhccccc
Confidence            4689999999998 99999999987 9999999999999999999999865433   34699999999999999999999


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      ++||||||++.|..+|..|++|++|++|.|++..+   .+.. .+|                   ++++|++.++++++|
T Consensus        82 ~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f---~atpp~~G-------------------~la~y~~~~~dfc~K  139 (354)
T KOG0024|consen   82 HLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVF---CATPPVDG-------------------TLAEYYVHPADFCYK  139 (354)
T ss_pred             ccccCCeEEecCCCccccchhhhCcccccCCcccc---ccCCCcCC-------------------ceEEEEEechHheee
Confidence            99999999999999999999999999999999887   3333 355                   999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      |||++|++++|++. ++++++++ .+.+++++|++|||+|+|++|+.+...||++|+.+|++++..++|+++++++|++.
T Consensus       140 LPd~vs~eeGAl~e-PLsV~~HA-cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~  217 (354)
T KOG0024|consen  140 LPDNVSFEEGALIE-PLSVGVHA-CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATV  217 (354)
T ss_pred             CCCCCchhhccccc-chhhhhhh-hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeE
Confidence            99999999999999 79999996 57899999999999999999999999999999999999999999999999999998


Q ss_pred             EEcCCCCC-CccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEE
Q 016507          250 FVNSKNCG-DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  327 (388)
Q Consensus       250 v~~~~~~~-~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  327 (388)
                      +.+..... .+.+.+.+....+. .+|++|||+|....++.++..++.+ |+++..|.  +....++++.+...+++++.
T Consensus       218 ~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~g-Gt~vlvg~--g~~~~~fpi~~v~~kE~~~~  294 (354)
T KOG0024|consen  218 TDPSSHKSSPQELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSG-GTVVLVGM--GAEEIQFPIIDVALKEVDLR  294 (354)
T ss_pred             EeeccccccHHHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccC-CEEEEecc--CCCccccChhhhhhheeeee
Confidence            87665521 23344444444443 6999999999999999999999997 99888875  45778899999999999999


Q ss_pred             EeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce--eEEEEeeCC
Q 016507          328 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVIWMGE  388 (388)
Q Consensus       328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~--~kvvv~~~~  388 (388)
                      |++-   ..+.+++.+++++++|+++++++|++.|+++++.+||+.+.++..  .|+++...+
T Consensus       295 g~fr---y~~~~y~~ai~li~sGki~~k~lIT~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~~  354 (354)
T KOG0024|consen  295 GSFR---YCNGDYPTAIELVSSGKIDVKPLITHRYKFDDADEAFETLQHGEEGVIKVIITGPE  354 (354)
T ss_pred             eeee---eccccHHHHHHHHHcCCcCchhheecccccchHHHHHHHHHhCcCCceEEEEeCCC
Confidence            9852   224589999999999999999999999999999999999988774  599998653

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.5e-58  Score=406.32  Aligned_cols=347  Identities=26%  Similarity=0.399  Sum_probs=306.5

Q ss_pred             CCCCcceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCC
Q 016507           11 AGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      ...|.+++++++..++..  +++.+++.|+++++||+|||+|||||++|++.++|..+...+|.++|||++|+|+++|++
T Consensus         4 ~~~p~k~~g~~~~~~~G~l~p~~~~~~~~~~g~~dv~vkI~~cGIChsDlH~~~gdwg~s~~PlV~GHEiaG~VvkvGs~   83 (360)
T KOG0023|consen    4 MSIPEKQFGWAARDPSGVLSPEVFSFPVREPGENDVLVKIEYCGVCHSDLHAWKGDWGLSKYPLVPGHEIAGVVVKVGSN   83 (360)
T ss_pred             ccCchhhEEEEEECCCCCCCcceeEcCCCCCCCCcEEEEEEEEeccchhHHHhhccCCcccCCccCCceeeEEEEEECCC
Confidence            445788999999999884  666899999999999999999999999999999999988899999999999999999999


Q ss_pred             CCCCCCCCEE-eecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCce
Q 016507           89 VDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (388)
Q Consensus        89 v~~~~vGd~V-~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~  167 (388)
                      |++|++|||| +.+.+.+|..|++|.++++++|+..-+ .+.|+..+|              ...+|+||+|+++++.++
T Consensus        84 V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~-t~~g~~~DG--------------t~~~ggf~~~~~v~~~~a  148 (360)
T KOG0023|consen   84 VTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHF-TYNGVYHDG--------------TITQGGFQEYAVVDEVFA  148 (360)
T ss_pred             cccccccCeeeeeEEeccccCccccccCCcccCCceeE-eccccccCC--------------CCccCccceeEEEeeeeE
Confidence            9999999999 667789999999999999999993222 236777777              566789999999999999


Q ss_pred             EEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc-hHHHHHHHcC
Q 016507          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKRFG  246 (388)
Q Consensus       168 ~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~~~~~lg  246 (388)
                      +++|++++++.||.+.|+..|.|..| ...++.||++|-|.|+|++|.+++|+||++|+ +|+++++++ .|.+.+++||
T Consensus       149 ~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~-rV~vis~~~~kkeea~~~LG  226 (360)
T KOG0023|consen  149 IKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVGLGGLGHMAVQYAKAMGM-RVTVISTSSKKKEEAIKSLG  226 (360)
T ss_pred             EECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEecCcccchHHHHHHHHhCc-EEEEEeCCchhHHHHHHhcC
Confidence            99999999999999999999999976 56788899999999997799999999999999 999999987 6667778899


Q ss_pred             CcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEE
Q 016507          247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKIL  326 (388)
Q Consensus       247 a~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i  326 (388)
                      |+..++..+  +++..+.+.+.+++++|-|.+.  ....++.++.+++.+ |++|.+|...  .++.++.+++..+.+.|
T Consensus       227 Ad~fv~~~~--d~d~~~~~~~~~dg~~~~v~~~--a~~~~~~~~~~lk~~-Gt~V~vg~p~--~~~~~~~~~lil~~~~I  299 (360)
T KOG0023|consen  227 ADVFVDSTE--DPDIMKAIMKTTDGGIDTVSNL--AEHALEPLLGLLKVN-GTLVLVGLPE--KPLKLDTFPLILGRKSI  299 (360)
T ss_pred             cceeEEecC--CHHHHHHHHHhhcCcceeeeec--cccchHHHHHHhhcC-CEEEEEeCcC--CcccccchhhhcccEEE
Confidence            999998873  2788888888877777777766  555589999999998 9999999843  37889999999999999


Q ss_pred             EEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEEeeC
Q 016507          327 MGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMG  387 (388)
Q Consensus       327 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv~~~  387 (388)
                      .|+.+++.   .+.++++++..++.+...  | +..+++++++|+++|++++.- |.||.+.
T Consensus       300 ~GS~vG~~---ket~E~Ldf~a~~~ik~~--I-E~v~~~~v~~a~erm~kgdV~yRfVvD~s  355 (360)
T KOG0023|consen  300 KGSIVGSR---KETQEALDFVARGLIKSP--I-ELVKLSEVNEAYERMEKGDVRYRFVVDVS  355 (360)
T ss_pred             EeeccccH---HHHHHHHHHHHcCCCcCc--e-EEEehhHHHHHHHHHHhcCeeEEEEEEcc
Confidence            99998874   789999999999976654  4 899999999999999999874 9998764

>PLN02740 Alcohol dehydrogenase-like

Probab=100.00  E-value=2.3e-55  Score=421.97  Aligned_cols=374  Identities=51%  Similarity=0.918  Sum_probs=306.1

Q ss_pred             CCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC-CCCCCcccccceeEEEEEecCCC
Q 016507           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      ..+|++|||+++.++++++.++++|.|+|+++||+|||.++|||++|++.+.|... ...+|.++|||++|+|+++|+++
T Consensus         5 ~~~~~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v   84 (381)
T PLN02740          5 QGKVITCKAAVAWGPGEPLVMEEIRVDPPQKMEVRIKILYTSICHTDLSAWKGENEAQRAYPRILGHEAAGIVESVGEGV   84 (381)
T ss_pred             cccceeeEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEecChhhHHHhCCCCcccCCCCccccccceEEEEEeCCCC
Confidence            34678999999999987788999999999999999999999999999999988753 23578999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCC-CCCCCCcccccc-CCceecccccccceeeeEEeecCce
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW-MPRDQTSRFKDL-RGETIHHFVSVSSFSEYTVLDIAHV  167 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g-~~~~g~~~~~~~-~~~~~~~~~~~g~~a~~~~~~~~~~  167 (388)
                      ++|++||||++.+..+|+.|.+|..+..+.|++.......+ ....|..++... .+.........|+|+||+.++.+++
T Consensus        85 ~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~G~~aey~~v~~~~~  164 (381)
T PLN02740         85 EDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQPIYHFLNTSTFTEYTVLDSACV  164 (381)
T ss_pred             CcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCcccccccCccceeEEEEehHHe
Confidence            99999999999999999999999999999998865321100 000110000000 0000000112469999999999999


Q ss_pred             EEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       168 ~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      +++|+++++++++.+++.+.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+
T Consensus       165 ~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga  244 (381)
T PLN02740        165 VKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI  244 (381)
T ss_pred             EECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence            99999999999999999999999988788899999999999999999999999999999679999999999999999999


Q ss_pred             cEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEE
Q 016507          248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  327 (388)
Q Consensus       248 ~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  327 (388)
                      +++++.++ ...++.+.+++++++++|++||++|....+..+++++++++|+++.+|.......+.++...++ +++++.
T Consensus       245 ~~~i~~~~-~~~~~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~-~~~~i~  322 (381)
T PLN02740        245 TDFINPKD-SDKPVHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELF-DGRSIT  322 (381)
T ss_pred             cEEEeccc-ccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHh-cCCeEE
Confidence            99998765 1124777888877668999999999987799999999883399999997543223445544343 688999


Q ss_pred             EeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          328 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      |++.+.+....+++++++++.++++++.++++++|+|+|+++|++.+.++...|++|++
T Consensus       323 g~~~~~~~~~~~~~~~~~~~~~g~i~~~~~it~~~~l~e~~~A~~~~~~~~~~k~~~~~  381 (381)
T PLN02740        323 GSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFEKINEAFQLLEDGKALRCLLHL  381 (381)
T ss_pred             EEecCCCCcHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHHCCCceeEEEeC
Confidence            98776655445789999999999998888999999999999999999888778999874

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=100.00  E-value=2.5e-55  Score=420.54  Aligned_cols=362  Identities=37%  Similarity=0.631  Sum_probs=304.5

Q ss_pred             eeeeeecCCCC--------CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCC
Q 016507           17 CRAAIATAPGE--------PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        17 ~ka~~~~~~~~--------~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      |||+++.+++.        .++++++|.|+|+++||+|||.+++||++|++.+.|.++ ..+|.++|||++|+|+++|++
T Consensus         1 mka~~~~~~g~~~~~~~~~~l~~~~~~~P~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~   79 (371)
T cd08281           1 MRAAVLRETGAPTPYADSRPLVIEEVELDPPGPGEVLVKIAAAGLCHSDLSVINGDRP-RPLPMALGHEAAGVVVEVGEG   79 (371)
T ss_pred             CcceEEEecccccccccCCCceEEEeecCCCCCCeEEEEEEEEeeCccchHhhcCCCC-CCCCccCCccceeEEEEeCCC
Confidence            79999998653        389999999999999999999999999999999998754 356899999999999999999


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      +++|++||||++.+...|+.|.+|+.|++++|.........|...+|..++.. ++.......+.|+|+||+.++.++++
T Consensus        80 v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~-~~~~~~~~~g~G~~aey~~v~~~~~~  158 (371)
T cd08281          80 VTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRL-RGGEINHHLGVSAFAEYAVVSRRSVV  158 (371)
T ss_pred             CCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccc-cCcccccccCcccceeeEEecccceE
Confidence            99999999999888889999999999999999875432222222221100000 00000001123699999999999999


Q ss_pred             EcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc
Q 016507          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (388)
Q Consensus       169 ~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~  248 (388)
                      ++|+++++++|+.+++.++|||.++.+.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+++++++|++
T Consensus       159 ~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  238 (371)
T cd08281         159 KIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGAT  238 (371)
T ss_pred             ECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999999999999887888899999999999999999999999999996799999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEE
Q 016507          249 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  328 (388)
Q Consensus       249 ~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  328 (388)
                      +++++++   +++.+.+++++++++|++|||+|....+..++++++++ |+++.+|........+++...++.+++++.|
T Consensus       239 ~~i~~~~---~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g  314 (371)
T cd08281         239 ATVNAGD---PNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRG-GTTVTAGLPDPEARLSVPALSLVAEERTLKG  314 (371)
T ss_pred             eEeCCCc---hhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEccCCCCceeeecHHHHhhcCCEEEE
Confidence            9999877   67888888887778999999999887799999999997 9999999754333467788888889999999


Q ss_pred             eeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEE
Q 016507          329 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  384 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv  384 (388)
                      ++...+...++++++++++.+|++++.++++++|+|+|+++|++.+.++...|.||
T Consensus       315 ~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~vi  370 (371)
T cd08281         315 SYMGSCVPRRDIPRYLALYLSGRLPVDKLLTHRLPLDEINEGFDRLAAGEAVRQVI  370 (371)
T ss_pred             EecCCCChHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCceeeee
Confidence            98765544567899999999999998889999999999999999999887764443

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=100.00  E-value=8.7e-55  Score=416.07  Aligned_cols=367  Identities=46%  Similarity=0.841  Sum_probs=302.4

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++..++++++++++|.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++||
T Consensus         2 ~~a~~~~~~~~~l~~~~~~~P~~~~~eVlI~v~a~gi~~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd   81 (368)
T TIGR02818         2 SRAAVAWAAGQPLKIEEVDVEMPQKGEVLVRIVATGVCHTDAFTLSGADPEGVFPVILGHEGAGIVEAVGEGVTSVKVGD   81 (368)
T ss_pred             ceEEEEecCCCCeEEEEecCCCCCCCeEEEEEEEecccHHHHHHhcCCCCCCCCCeeeccccEEEEEEECCCCccCCCCC
Confidence            79999988887799999999999999999999999999999999998765556799999999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      ||++.+..+|+.|.+|+.++.+.|.+.......|+..+|..++. .+|...++..+.|+|+||+.+|.++++++|+++++
T Consensus        82 rV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~lP~~l~~  160 (368)
T TIGR02818        82 HVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFS-KDGQPIYHYMGCSTFSEYTVVPEISLAKINPAAPL  160 (368)
T ss_pred             EEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccc-cCCCcccccccCccceeeEEechhheEECCCCCCH
Confidence            99998889999999999999999987543222343333321110 00100001112469999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      ++++.+++++.|||+++...+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++++++.++ 
T Consensus       161 ~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~-  239 (368)
T TIGR02818       161 EEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPND-  239 (368)
T ss_pred             HHhhhhcchhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccc-
Confidence            9999999999999998877889999999999999999999999999999977999999999999999999999998764 


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCc
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  336 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  336 (388)
                      ...++.+.+++++++++|++|||+|+...+..+++++++++|+++.+|.......+.++...++. +..+.|+..+....
T Consensus       240 ~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~  318 (368)
T TIGR02818       240 YDKPIQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAFGGVKG  318 (368)
T ss_pred             cchhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhc-cceEEEeeccCCCc
Confidence            11456677888777789999999998777899999997723999999975433334455444443 44577775443333


Q ss_pred             cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          337 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      ..++++++++++++++.++++++++|||+|+++|++.++++...|++|++
T Consensus       319 ~~~~~~~~~~~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~k~~v~~  368 (368)
T TIGR02818       319 RTELPGIVEQYMKGEIALDDFVTHTMPLEDINEAFDLMHEGKSIRTVIHY  368 (368)
T ss_pred             HHHHHHHHHHHHCCCCCchhheeEEecHHHHHHHHHHHhCCCceeEEeeC
Confidence            45789999999999998888999999999999999999887777999875

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=100.00  E-value=5.5e-55  Score=416.35  Aligned_cols=355  Identities=34%  Similarity=0.580  Sum_probs=304.8

Q ss_pred             ceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        16 ~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      +|||+++.+++.+++++++|.|+|+++||+|||.++++|++|++.++|..+ ..+|.++|||++|+|+++|+++++|++|
T Consensus         1 ~mka~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (358)
T TIGR03451         1 TVRGVIARSKGAPVELETIVVPDPGPGEVIVDIQACGVCHTDLHYREGGIN-DEFPFLLGHEAAGVVEAVGEGVTDVAPG   79 (358)
T ss_pred             CcEEEEEccCCCCCEEEEEECCCCCCCeEEEEEEEEeecHHHHHHhcCCcc-ccCCcccccceEEEEEEeCCCCcccCCC
Confidence            599999999998899999999999999999999999999999999988653 3578999999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCC-CCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~-~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      |+|++.+...|+.|.+|+.++.++|....... ..++ .+|         .........|+|+||+.++..+++++|+++
T Consensus        80 drV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~-~~g---------~~~~~~~~~G~~aey~~v~~~~~~~ip~~~  149 (358)
T TIGR03451        80 DYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTL-TDG---------TELSPALGIGAFAEKTLVHAGQCTKVDPAA  149 (358)
T ss_pred             CEEEEccCCCCCCChHHhCcCcccCcCcccccccccc-ccC---------cccccccccccccceEEEehhheEECCCCC
Confidence            99999999999999999999999997532110 0000 001         000001224699999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++++|+.+++.+.|||.++...+.+++|++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++|++++++++
T Consensus       150 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~  229 (358)
T TIGR03451       150 DPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSS  229 (358)
T ss_pred             ChhHhhhhcccchhhHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCC
Confidence            99999999999999998877778899999999999999999999999999996699999999999999999999999987


Q ss_pred             CCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          255 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      +   .++.+.+++.+++ ++|+||||+|+...+..++++++++ |+++.+|........++++..++.+++++.+++...
T Consensus       230 ~---~~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  305 (358)
T TIGR03451       230 G---TDPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLA-GTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGD  305 (358)
T ss_pred             C---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCC
Confidence            7   6788888888887 8999999999877799999999997 999999975433345677777888899999887543


Q ss_pred             CCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEe
Q 016507          334 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  385 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~  385 (388)
                      ....++++++++++++|++++.++++++|||+|+++|++.++++...|++|.
T Consensus       306 ~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~~  357 (358)
T TIGR03451       306 CLPERDFPMLVDLYLQGRLPLDAFVTERIGLDDVEEAFDKMHAGDVLRSVVE  357 (358)
T ss_pred             CCcHHHHHHHHHHHHcCCCCchheEEEEecHHHHHHHHHHHhCCCcceeEEe
Confidence            3345678999999999999888899999999999999999988877788875

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=100.00  E-value=2.5e-54  Score=413.16  Aligned_cols=367  Identities=46%  Similarity=0.872  Sum_probs=304.4

Q ss_pred             ceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        16 ~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      +|||+++..++++++++++|.|+|+++||+|||.++++|++|++.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~~a~~~~~~~~~~~~~~~~~P~~~~~eVlIrv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~vG   81 (368)
T cd08300           2 TCKAAVAWEAGKPLSIEEVEVAPPKAGEVRIKILATGVCHTDAYTLSGADPEGLFPVILGHEGAGIVESVGEGVTSVKPG   81 (368)
T ss_pred             cceEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEechhhHHHhcCCCccCCCCceeccceeEEEEEeCCCCccCCCC
Confidence            68999988887779999999999999999999999999999999998876655689999999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |+|+..+..+|+.|.+|++++++.|.+.....+.|...+|..++. .+|.+.....+.|+|+||+.++.++++++|++++
T Consensus        82 drV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~l~  160 (368)
T cd08300          82 DHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFS-CKGKPIYHFMGTSTFSEYTVVAEISVAKINPEAP  160 (368)
T ss_pred             CEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccc-cCCcccccccccccceeEEEEchhceEeCCCCCC
Confidence            999998899999999999999999987543222233333211110 0011111112346999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      +++|+.+++++.|||+++.+.+.+++|++|||+|+|++|++++|+|+.+|+.+|+++++++++.++++++|+++++++++
T Consensus       161 ~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~  240 (368)
T cd08300         161 LDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKD  240 (368)
T ss_pred             hhhhhhhccchhhhHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccc
Confidence            99999999999999998878888999999999999999999999999999967999999999999999999999998775


Q ss_pred             CCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC
Q 016507          256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  335 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  335 (388)
                      . ++++.+.+.+++++++|+||||+|+...+..+++++++++|+++.+|.......+.++...+.. +..+.++..+.+.
T Consensus       241 ~-~~~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~  318 (368)
T cd08300         241 H-DKPIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLVT-GRVWKGTAFGGWK  318 (368)
T ss_pred             c-chHHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHhh-cCeEEEEEecccC
Confidence            1 1257788888877799999999998767899999997733999999975322334444444443 4577777666665


Q ss_pred             ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEe
Q 016507          336 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  385 (388)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~  385 (388)
                      ..++++++++++.++++.+.++++++|+|+|+++|++.+.++...|++|+
T Consensus       319 ~~~~~~~~~~~~~~g~l~~~~~i~~~~~le~~~~A~~~~~~~~~~k~~~~  368 (368)
T cd08300         319 SRSQVPKLVEDYMKGKIKVDEFITHTMPLDEINEAFDLMHAGKSIRTVVK  368 (368)
T ss_pred             cHHHHHHHHHHHHcCCCChhhceeeeEcHHHHHHHHHHHhCCCCceeeeC
Confidence            56789999999999999888899999999999999999988777799885

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=100.00  E-value=6.8e-54  Score=410.59  Aligned_cols=366  Identities=53%  Similarity=0.973  Sum_probs=305.1

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      |+|||+++.+++++++++++|+|+|+++||+|||.+++||++|++.++|..+...+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~ka~~~~~~~~~~~l~~~~~p~~~~~evlIkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~   80 (369)
T cd08301           1 ITCKAAVAWEAGKPLVIEEVEVAPPQAMEVRIKILHTSLCHTDVYFWEAKGQTPLFPRILGHEAAGIVESVGEGVTDLKP   80 (369)
T ss_pred             CccEEEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEEeeCchhHHHhcCCCCCCCCCcccccccceEEEEeCCCCCcccc
Confidence            47999999988888999999999999999999999999999999999987665677999999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCC-CccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ-TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g-~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      ||||++.+..+|+.|.+|+.++++.|.........|....+ -.++. ..|...+.....|+|+||+.++..+++++|++
T Consensus        81 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP~~  159 (369)
T cd08301          81 GDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFS-INGKPIYHFVGTSTFSEYTVVHVGCVAKINPE  159 (369)
T ss_pred             CCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccc-cCCcceeeeeccccceeEEEEecccEEECCCC
Confidence            99999999999999999999999999875432112221100 00000 00000000113469999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++++++.+++.+.|||.++.+..++++|++|||+|+|++|++++|+|+.+|+.+|+++++++++.++++++|++.+++.
T Consensus       160 ~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~  239 (369)
T cd08301         160 APLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNP  239 (369)
T ss_pred             CCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcc
Confidence            99999999999999999988888899999999999999999999999999998679999999999999999999999987


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhc-CCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK-GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~-~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      .+. ...+.+.+++++++++|++|||+|....+..+++++++ + |+++.+|.......++++...++ +++++.|++..
T Consensus       240 ~~~-~~~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~-g~~v~~g~~~~~~~~~~~~~~~~-~~~~i~g~~~~  316 (369)
T cd08301         240 KDH-DKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGW-GVTVLLGVPHKDAVFSTHPMNLL-NGRTLKGTLFG  316 (369)
T ss_pred             ccc-chhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCC-CEEEEECcCCCCcccccCHHHHh-cCCeEEEEecC
Confidence            641 13466777777766899999999988778999999999 4 89999998543334556544444 68999999877


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEE
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  384 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv  384 (388)
                      .+..+.+++++++++.++.+++.++++++|||+|+++|++.+++++..|++|
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~~  368 (369)
T cd08301         317 GYKPKTDLPNLVEKYMKKELELEKFITHELPFSEINKAFDLLLKGECLRCIL  368 (369)
T ss_pred             CCChHHHHHHHHHHHHcCCCCcHHheeeeecHHHHHHHHHHHHCCCceeEEe
Confidence            6655567899999999999988888999999999999999999988889887

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=100.00  E-value=2.2e-53  Score=402.63  Aligned_cols=336  Identities=27%  Similarity=0.430  Sum_probs=294.0

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++.+++. ++++++|.|+|+++||+||+.++++|++|++.+.+.+.. ..+|.++|||++|+|+++|++|+.|++|
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~~~gi~~~D~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   79 (339)
T cd08239           1 MRGAVFPGDRT-VELREFPVPVPGPGEVLLRVKASGLCGSDLHYYYHGHRAPAYQGVIPGHEPAGVVVAVGPGVTHFRVG   79 (339)
T ss_pred             CeEEEEecCCc-eEEEecCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCccCCCCceeccCceEEEEEECCCCccCCCC
Confidence            79999998875 999999999999999999999999999999988775432 2358899999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |+|+..+...|+.|..|+.++++.|.+...  .+|...+|                   +|+||+.++.++++++|++++
T Consensus        80 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~--~~g~~~~G-------------------~~ae~~~v~~~~~~~~P~~~~  138 (339)
T cd08239          80 DRVMVYHYVGCGACRNCRRGWMQLCTSKRA--AYGWNRDG-------------------GHAEYMLVPEKTLIPLPDDLS  138 (339)
T ss_pred             CEEEECCCCCCCCChhhhCcCcccCcCccc--ccccCCCC-------------------cceeEEEechHHeEECCCCCC
Confidence            999999999999999999999999986543  24444444                   999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      +++|+.+++++.|||+++ ..+.+.+|++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++|+++++++++
T Consensus       139 ~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~  217 (339)
T cd08239         139 FADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQ  217 (339)
T ss_pred             HHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCc
Confidence            999999999999999976 5678899999999999999999999999999954999999999999999999999999876


Q ss_pred             CCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCH-HHHHhcCcEEEEeeecC
Q 016507          256 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSGKILMGSLFGG  333 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~i~g~~~~~  333 (388)
                         .+ .+.+.+.+++ ++|++|||+|+...+..++++++++ |+++.+|... ..  .++. ..++.+++++.|++...
T Consensus       218 ---~~-~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~--~~~~~~~~~~~~~~i~g~~~~~  289 (339)
T cd08239         218 ---DD-VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPW-GRLVLVGEGG-EL--TIEVSNDLIRKQRTLIGSWYFS  289 (339)
T ss_pred             ---ch-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcCCC-Cc--ccCcHHHHHhCCCEEEEEecCC
Confidence               45 6677777777 8999999999988678999999997 9999999743 22  2332 45677899999987543


Q ss_pred             CCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          334 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                         .++++++++++.+|++++.++++++|+|+++++|++.++++..+|+||++
T Consensus       290 ---~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~gKvvi~~  339 (339)
T cd08239         290 ---VPDMEECAEFLARHKLEVDRLVTHRFGLDQAPEAYALFAQGESGKVVFVF  339 (339)
T ss_pred             ---HHHHHHHHHHHHcCCCChhHeEEEEecHHHHHHHHHHHHcCCceEEEEeC
Confidence               35799999999999998888999999999999999999887767999875

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PLN02827 Alcohol dehydrogenase-like

Probab=100.00  E-value=8.6e-53  Score=403.17  Aligned_cols=365  Identities=50%  Similarity=0.929  Sum_probs=299.1

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      ..|||+++.++++.++++++|.|+|+++||+|||.+++||++|++.+.+..   .+|.++|||++|+|+++|+++++|++
T Consensus        11 ~~mka~~~~~~~~~~~~~e~~~P~~~~~eVlVkv~~~gic~sD~~~~~g~~---~~p~i~GhE~~G~V~~vG~~v~~~~~   87 (378)
T PLN02827         11 ITCRAAVAWGAGEALVMEEVEVSPPQPLEIRIKVVSTSLCRSDLSAWESQA---LFPRIFGHEASGIVESIGEGVTEFEK   87 (378)
T ss_pred             ceeEEEEEecCCCCceEEEeecCCCCCCEEEEEEEEEecChhHHHHhcCCC---CCCeeecccceEEEEEcCCCCcccCC
Confidence            569999999988669999999999999999999999999999999887742   45889999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCC-CCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR-DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~-~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      ||+|+..+...|+.|.+|+++++++|.+.... ..|... ++..++. ..|......-..|+|+||+.++.+.++++|++
T Consensus        88 GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~~~~~~~-~~g~~~~~~~~~G~~aeyv~v~~~~~~~iP~~  165 (378)
T PLN02827         88 GDHVLTVFTGECGSCRHCISGKSNMCQVLGLE-RKGVMHSDQKTRFS-IKGKPVYHYCAVSSFSEYTVVHSGCAVKVDPL  165 (378)
T ss_pred             CCEEEEecCCCCCCChhhhCcCcccccCcccc-ccccccCCCccccc-ccCcccccccccccceeeEEechhheEECCCC
Confidence            99999998899999999999999999864320 011100 0000000 00000000001369999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++++++.+++.+.++|.+++..+++++|++|||+|+|++|++++|+|+++|+..|+++++++++.++++++|+++++++
T Consensus       166 l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~  245 (378)
T PLN02827        166 APLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINP  245 (378)
T ss_pred             CCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcc
Confidence            99999999998999999877777889999999999999999999999999999668889889999999999999999987


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCH-HHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~i~g~~~~  332 (388)
                      ++ ..+++.+.+++++++++|+||||+|....+..+++.+++++|+++.+|.....  ..++. ..++.+++++.|+...
T Consensus       246 ~~-~~~~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~--~~~~~~~~~~~~~~~i~g~~~~  322 (378)
T PLN02827        246 ND-LSEPIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAK--PEVSAHYGLFLSGRTLKGSLFG  322 (378)
T ss_pred             cc-cchHHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCC--ccccccHHHHhcCceEEeeecC
Confidence            64 11357777888776689999999999866899999999833999999975432  23333 3467789999998776


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEeeC
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  387 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~~  387 (388)
                      .+....+++++++++++|++.+.++++++|+|+++++|++.+++++..|+||.+.
T Consensus       323 ~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~le~~~~A~~~~~~~~~~k~vi~~~  377 (378)
T PLN02827        323 GWKPKSDLPSLVDKYMNKEIMIDEFITHNLSFDEINKAFELMREGKCLRCVIHMP  377 (378)
T ss_pred             CCchhhhHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHCCCceEEEEEec
Confidence            5544567899999999999988889999999999999999999888789999874

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2e-52  Score=396.42  Aligned_cols=338  Identities=19%  Similarity=0.300  Sum_probs=283.4

Q ss_pred             CcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccc-cCCC--CCCCCcccccceeEEEEEecCCCC
Q 016507           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDF--PAVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      ...+||+++.++++ ++++++|.| ++++||||||.++|||++|+++++ |...  ...+|.++|||++|+|+++  +++
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~p-~~~~evlVkv~a~gic~sD~~~~~~g~~~~~~~~~p~v~GhE~~G~V~~v--~v~   77 (343)
T PRK09880          2 QVKTQSCVVAGKKD-VAVTEQEIE-WNNNGTLVQITRGGICGSDLHYYQEGKVGNFVIKAPMVLGHEVIGKIVHS--DSS   77 (343)
T ss_pred             cccceEEEEecCCc-eEEEecCCC-CCCCeEEEEEEEEEECccccHhhccCCcccccccCCcccCcccEEEEEEe--cCc
Confidence            45789999999988 999999987 689999999999999999999875 3322  2357999999999999999  788


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEc
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l  170 (388)
                      +|++||||++.+..+|+.|.+|+.+++++|++...   +|.....              ....|+|+||++++++.++++
T Consensus        78 ~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~~--------------~~~~G~~aey~~v~~~~~~~~  140 (343)
T PRK09880         78 GLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRF---FGSAMYF--------------PHVDGGFTRYKVVDTAQCIPY  140 (343)
T ss_pred             cCCCCCEEEECCCCCCcCChhhcCCChhhCCCcce---eeccccc--------------CCCCCceeeeEEechHHeEEC
Confidence            99999999999999999999999999999987543   2321000              001259999999999999999


Q ss_pred             CCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       171 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      |+++++++++.. .+++|||+++ ......++++|||+|+|++|++++|+|+.+|+++|++++++++++++++++|++++
T Consensus       141 P~~l~~~~aa~~-~~~~~a~~al-~~~~~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~v  218 (343)
T PRK09880        141 PEKADEKVMAFA-EPLAVAIHAA-HQAGDLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL  218 (343)
T ss_pred             CCCCCHHHHHhh-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEE
Confidence            999999876644 4788999976 44566789999999999999999999999999779999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      +|+++   .++.+.. +. .+++|+||||+|++..+..++++++++ |+++.+|...  ....+++..++.+++++.|+.
T Consensus       219 i~~~~---~~~~~~~-~~-~g~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i~g~~  290 (343)
T PRK09880        219 VNPQN---DDLDHYK-AE-KGYFDVSFEVSGHPSSINTCLEVTRAK-GVMVQVGMGG--APPEFPMMTLIVKEISLKGSF  290 (343)
T ss_pred             ecCCc---ccHHHHh-cc-CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCC--CCCccCHHHHHhCCcEEEEEe
Confidence            99876   4444322 22 236999999999977789999999997 9999999743  335677777888999999986


Q ss_pred             ecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          331 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..    .++++++++++++|++++.++++++|+|+|+++|++.+.+++. +|++|.+
T Consensus       291 ~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  343 (343)
T PRK09880        291 RF----TEEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALIFAGDKTQAAKVQLVF  343 (343)
T ss_pred             ec----cccHHHHHHHHHcCCCCchhheEEEEEHHHHHHHHHHHhcCCCceEEEEeC
Confidence            32    3679999999999999888899999999999999999988764 6999864

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=100.00  E-value=3.9e-52  Score=392.80  Aligned_cols=344  Identities=27%  Similarity=0.383  Sum_probs=284.7

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCc-ccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR-ILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~-v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |+++++..++...++++.+.|.+.|+||+|||.++|||+||++.+++..+....|. ++|||++|+|+++| .++.+++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~p~~vlVkv~~~gICGSDlh~~~g~~~~~~~~~~i~GHE~~G~V~evG-~~~~~~~G   79 (350)
T COG1063           1 MKAAVVYVGGGDVRLEEPPPPIPGPGDVLIRVTATGICGSDLHIYRGGEPFVPPGDIILGHEFVGEVVEVG-VVRGFKVG   79 (350)
T ss_pred             CceeEEEecCCccccccCCCCCCCCCeEEEEEEEEeEchhhhhhccCCCCCCCCCCcccCccceEEEEEec-cccCCCCC
Confidence            56777777765354778877778999999999999999999999999876656566 99999999999999 77889999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEE-cCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK-VDPTV  174 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~-lP~~~  174 (388)
                      |||++.+..+|+.|.+|++|.+++|.+.++   +|....+              ....|+|+||+.+|.++.++ +|+++
T Consensus        80 drVvv~~~~~Cg~C~~C~~G~~~~C~~~~~---~g~~~~~--------------~~~~G~~aEyv~vp~~~~~~~~pd~~  142 (350)
T COG1063          80 DRVVVEPNIPCGHCRYCRAGEYNLCENPGF---YGYAGLG--------------GGIDGGFAEYVRVPADFNLAKLPDGI  142 (350)
T ss_pred             CEEEECCCcCCCCChhHhCcCcccCCCccc---ccccccc--------------CCCCCceEEEEEeccccCeecCCCCC
Confidence            999999999999999999999999996654   2222111              00124999999999755555 58888


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNS  253 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~  253 (388)
                       +.+++++..++.+++++........++++|+|+|+|++|++++++++..|+.+|++++.+++|++++++ .|++.+++.
T Consensus       143 -~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~  221 (350)
T COG1063         143 -DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNP  221 (350)
T ss_pred             -ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecC
Confidence             445555555999998764445556666699999999999999999999999999999999999999999 677777766


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      ..   .+..+.+.+.++| ++|++|||+|....+..+++.++++ |+++.+|....... .++...++.+++++.|++. 
T Consensus       222 ~~---~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~g-G~v~~vGv~~~~~~-~~~~~~~~~kel~l~gs~~-  295 (350)
T COG1063         222 SE---DDAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPG-GTVVVVGVYGGEDI-PLPAGLVVSKELTLRGSLR-  295 (350)
T ss_pred             cc---ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCC-CEEEEEeccCCccC-ccCHHHHHhcccEEEeccC-
Confidence            55   4677788889988 9999999999998899999999997 99999998653332 6777788899999999842 


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc--eeEEEEee
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVIWM  386 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~--~~kvvv~~  386 (388)
                       .....+++.+++++.+|++++.++++++++++++++|++.+.++.  ..|+++++
T Consensus       296 -~~~~~~~~~~~~ll~~g~i~~~~lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~  350 (350)
T COG1063         296 -PSGREDFERALDLLASGKIDPEKLITHRLPLDDAAEAYELFADRKEEAIKVVLKP  350 (350)
T ss_pred             -CCCcccHHHHHHHHHcCCCChhHceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence             122468999999999999999999999999999999999998755  34998864

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=100.00  E-value=7.8e-52  Score=395.56  Aligned_cols=365  Identities=49%  Similarity=0.922  Sum_probs=303.2

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      |+|||+++.+++++++++++|.|.++++||+|||.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++.+++
T Consensus         1 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~evlVkv~~~gi~~sD~~~~~g~~~-~~~p~i~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08277           1 IKCKAAVAWEAGKPLVIEEIEVAPPKANEVRIKMLATSVCHTDILAIEGFKA-TLFPVILGHEGAGIVESVGEGVTNLKP   79 (365)
T ss_pred             CccEEEEEccCCCCcEEEEEECCCCCCCEEEEEEEEEeechhhHHHhcCCCC-CCCCeecccceeEEEEeeCCCCccCCC
Confidence            5789999998887799999999999999999999999999999999988754 467899999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||+|+..+...|+.|.+|..+..++|++.... ..|...++..++.. .|.-.....+.|+|+||+.++.++++++|+++
T Consensus        80 GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~~~g~~ae~~~v~~~~~~~lP~~l  157 (365)
T cd08277          80 GDKVIPLFIGQCGECSNCRSGKTNLCQKYRAN-ESGLMPDGTSRFTC-KGKKIYHFLGTSTFSQYTVVDENYVAKIDPAA  157 (365)
T ss_pred             CCEEEECCCCCCCCCchhcCcCcccCcCcccc-ccccccCCcccccc-CCcccccccccccceeeEEEchhheEECCCCC
Confidence            99999988999999999999999999875532 12332222111100 00000001124699999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++++++.+++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++++++.+
T Consensus       158 ~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~  237 (365)
T cd08277         158 PLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPK  237 (365)
T ss_pred             CHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccc
Confidence            99999999999999999877888899999999999999999999999999997799999999999999999999999876


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                      + ....+.+.+++++++++|+||||+|....+..+++++++++|+++.+|... +...+++...++. ++++.|++.+.+
T Consensus       238 ~-~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-~~~~~~~~~~~~~-~~~i~g~~~~~~  314 (365)
T cd08277         238 D-SDKPVSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPP-GAELSIRPFQLIL-GRTWKGSFFGGF  314 (365)
T ss_pred             c-ccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCC-ccccccCHhHHhh-CCEEEeeecCCC
Confidence            5 112356777777766899999999987778999999977239999999753 2334556656654 889999887766


Q ss_pred             CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEe
Q 016507          335 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  385 (388)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~  385 (388)
                      ....++++++++++++.+++.++++++|+|+|+++|++.++++...|+++.
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k~~i~  365 (365)
T cd08277         315 KSRSDVPKLVSKYMNKKFDLDELITHVLPFEEINKGFDLMKSGECIRTVIT  365 (365)
T ss_pred             ChHHHHHHHHHHHHCCCcChhHheeeEEchhhHHHHHHHHHCCCCceEeeC
Confidence            555678999999999998888899999999999999999988876798873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=100.00  E-value=9.1e-52  Score=396.87  Aligned_cols=347  Identities=22%  Similarity=0.302  Sum_probs=279.5

Q ss_pred             ceeeeeecCCCCCeEEEEeecCCCC-------CCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCC
Q 016507           16 QCRAAIATAPGEPLVIDEVIVDPPN-------SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        16 ~~ka~~~~~~~~~~~~~~~~~p~~~-------~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      -|||+++.++++ ++++++|.|+|+       ++||||||.++|||++|++.++|..+ ..+|.++|||++|+|+++|++
T Consensus         2 ~mka~v~~~~~~-~~~~e~~~P~~~~~~~~~~~~eVlVkv~a~gIcgsD~~~~~g~~~-~~~p~i~GhE~~G~V~~vG~~   79 (393)
T TIGR02819         2 GNRGVVYLGPGK-VEVQDIDYPKLELPDGRKCEHGVILKVVTTNICGSDQHMVRGRTT-APTGLVLGHEITGEVIEKGRD   79 (393)
T ss_pred             CceEEEEecCCc-eeEEeccCCcccCCCccCCCCeEEEEEEEeeecHHHHHHHCCCCC-CCCCccccceeEEEEEEEcCc
Confidence            389999999986 999999999874       68999999999999999999988654 356899999999999999999


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCC---CCCCCCCCCCccccccCCceecccccccceeeeEEeecC
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK---ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~---~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~  165 (388)
                      |++|++||||++.+...|+.|.+|++|++++|.+....   ..+|+...|               ...|+|+||+.+|..
T Consensus        80 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~---------------~~~G~~aey~~v~~~  144 (393)
T TIGR02819        80 VEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMG---------------GWVGGQSEYVMVPYA  144 (393)
T ss_pred             cccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccC---------------CCCCceEEEEEechh
Confidence            99999999999999999999999999999999874321   012221100               012599999999964


Q ss_pred             --ceEEcCCCCCc----cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          166 --HVVKVDPTVPP----NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       166 --~~~~lP~~~~~----~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                        +++++|++++.    ..++.+.+.+.|||+++ ...++.++++|||.|+|++|++++|+|+.+|++.|++++++++|+
T Consensus       145 ~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~  223 (393)
T TIGR02819       145 DFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARL  223 (393)
T ss_pred             hCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHH
Confidence              79999998754    35677777899999976 457899999999988899999999999999996677677888899


Q ss_pred             HHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCH--------------HHHHHHHHHhhcCCceEEEEc
Q 016507          240 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA--------------SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       240 ~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~--------------~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ++++++|++.+...++   .++.+.+.+++++ ++|++|||+|.+              ..++.++++++++ |+++.+|
T Consensus       224 ~~a~~~Ga~~v~~~~~---~~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~i~~~G  299 (393)
T TIGR02819       224 AQARSFGCETVDLSKD---ATLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVG-GAIGIPG  299 (393)
T ss_pred             HHHHHcCCeEEecCCc---ccHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCC-CEEEEee
Confidence            9999999985443333   4577778888877 899999999986              3699999999998 9999999


Q ss_pred             cCCCCCc-----------cccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCccee-eeEecchHHHHHH
Q 016507          305 VDQPGSQ-----------LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT-HEMKFEEINSAFD  372 (388)
Q Consensus       305 ~~~~~~~-----------~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~l~~~~~A~~  372 (388)
                      .......           +++.....+.+++++.+..   ....+++.++++++.+|++++.++++ ++|||+|+++||+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~---~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~  376 (393)
T TIGR02819       300 LYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHTGQ---TPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYA  376 (393)
T ss_pred             ecCCcccccccccccccccccchHHhhccCceEEecc---CChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHH
Confidence            8532111           2233444455667776632   11123447899999999999888787 7899999999999


Q ss_pred             HHhcCceeEEEEeeC
Q 016507          373 LLIKGKCLRCVIWMG  387 (388)
Q Consensus       373 ~~~~~~~~kvvv~~~  387 (388)
                      .+.++...|++|+++
T Consensus       377 ~~~~~~~~Kvvi~~~  391 (393)
T TIGR02819       377 EFDAGAAKKFVIDPH  391 (393)
T ss_pred             HHhhCCceEEEEeCC
Confidence            998887789999864

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=100.00  E-value=2.6e-51  Score=382.26  Aligned_cols=316  Identities=25%  Similarity=0.320  Sum_probs=271.2

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccC-CCCCCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+.+.|  ++++++|.|+|++|||||||.|+++|+.|+...+|. .+..++|.++|.|++|+|+++|++|+.|+
T Consensus         1 mka~~~~~~g~~~~l~~~e~~~P~p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~   80 (326)
T COG0604           1 MKAVVVEEFGGPEVLKVVEVPEPEPGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFK   80 (326)
T ss_pred             CeEEEEeccCCCceeEEEecCCCCCCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcC
Confidence            789999988876  888999999999999999999999999999999997 33456899999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||||+..+ ..                        +  .                   .|+|+||+.+|++.++++|++
T Consensus        81 ~GdrV~~~~-~~------------------------~--~-------------------~G~~AEy~~v~a~~~~~~P~~  114 (326)
T COG0604          81 VGDRVAALG-GV------------------------G--R-------------------DGGYAEYVVVPADWLVPLPDG  114 (326)
T ss_pred             CCCEEEEcc-CC------------------------C--C-------------------CCcceeEEEecHHHceeCCCC
Confidence            999998532 00                        0  1                   359999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +|+++||+++++++|||+++....++++|++|||+|+ |++|++++|+||++|+ .++++.+++++.++++++|++++++
T Consensus       115 ls~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~~lGAd~vi~  193 (326)
T COG0604         115 LSFEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLKELGADHVIN  193 (326)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHHhcCCCEEEc
Confidence            9999999999999999999999899999999999986 9999999999999998 6777777778788999999999999


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      +++   +++.+.+++++++ ++|+|||++|+.. +..++++++++ |+++.+|...+.....++...++.+.+.+.|...
T Consensus       194 y~~---~~~~~~v~~~t~g~gvDvv~D~vG~~~-~~~~l~~l~~~-G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~  268 (326)
T COG0604         194 YRE---EDFVEQVRELTGGKGVDVVLDTVGGDT-FAASLAALAPG-GRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTL  268 (326)
T ss_pred             CCc---ccHHHHHHHHcCCCCceEEEECCCHHH-HHHHHHHhccC-CEEEEEecCCCCCccccCHHHHhhccEEEEEecc
Confidence            988   7899999999999 9999999999998 88899999998 9999999865334556777777888888888875


Q ss_pred             cCC---CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcC--ceeEEEEee
Q 016507          332 GGL---KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG--KCLRCVIWM  386 (388)
Q Consensus       332 ~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~--~~~kvvv~~  386 (388)
                      ...   ...+.+.++.+++.+|.++  +.++++|||+|..+|..+....  ..+|+||++
T Consensus       269 ~~~~~~~~~~~~~~l~~~~~~g~l~--~~i~~~~~l~e~~~a~a~~~~~~~~~GKvvl~~  326 (326)
T COG0604         269 GSRDPEALAEALAELFDLLASGKLK--PVIDRVYPLAEAPAAAAHLLLERRTTGKVVLKV  326 (326)
T ss_pred             eecchHHHHHHHHHHHHHHHcCCCc--ceeccEechhhhHHHHHHHHcccCCcceEEEeC
Confidence            543   1234677799999999554  4588999999965555543333  446999874

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=100.00  E-value=1.2e-50  Score=386.08  Aligned_cols=340  Identities=24%  Similarity=0.354  Sum_probs=283.6

Q ss_pred             CCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCC
Q 016507           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      +.-||+++++.+.+....+++.+++.|+|+++||+|||.+++||++|++++.|.++...+|.++|||++|+|+++|++|+
T Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~eVlV~v~~~gic~sD~~~~~g~~~~~~~p~i~GhE~~G~V~~vG~~v~   86 (360)
T PLN02586          7 EEHPQKAFGWAARDPSGVLSPFHFSRRENGDEDVTVKILYCGVCHSDLHTIKNEWGFTRYPIVPGHEIVGIVTKLGKNVK   86 (360)
T ss_pred             hhchhheeEEEecCCCCCceEEeecCCCCCCCeEEEEEEEecCChhhHhhhcCCcCCCCCCccCCcceeEEEEEECCCCC
Confidence            44678888888888776799999999999999999999999999999999988765446789999999999999999999


Q ss_pred             CCCCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCC----CCCCCCCCCccccccCCceecccccccceeeeEEeecC
Q 016507           91 GVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (388)
Q Consensus        91 ~~~vGd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~----~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~  165 (388)
                      +|++||+|++.+. ..|+.|.+|++|+++.|++..+..    ..|...+                   |+|+||+.++.+
T Consensus        87 ~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~  147 (360)
T PLN02586         87 KFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNY-------------------GGYSDMIVVDQH  147 (360)
T ss_pred             ccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCC-------------------CccceEEEEchH
Confidence            9999999986554 579999999999999998754310    0122223                   499999999999


Q ss_pred             ceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchH-HHHHHH
Q 016507          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKR  244 (388)
Q Consensus       166 ~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~-~~~~~~  244 (388)
                      +++++|+++++++|+.+++.+.|+|+++.....+++|++|||.|+|++|++++|+|+.+|+ +|++++.++++ .+.+++
T Consensus       148 ~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~  226 (360)
T PLN02586        148 FVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINR  226 (360)
T ss_pred             HeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHh
Confidence            9999999999999999999999999977666667899999999999999999999999999 78877666655 456678


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCc
Q 016507          245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  324 (388)
Q Consensus       245 lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  324 (388)
                      +|++++++..+   .   +.+++.++ ++|+|||++|....+..++++++++ |+++.+|...  ....+++..++.+++
T Consensus       227 ~Ga~~vi~~~~---~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~vG~~~--~~~~~~~~~~~~~~~  296 (360)
T PLN02586        227 LGADSFLVSTD---P---EKMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVN-GKLITLGLPE--KPLELPIFPLVLGRK  296 (360)
T ss_pred             CCCcEEEcCCC---H---HHHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCC-cEEEEeCCCC--CCCccCHHHHHhCCe
Confidence            99999998665   2   24555443 7999999999877789999999997 9999999643  345677777777888


Q ss_pred             EEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          325 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       325 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      .+.|++.+.   ..+++++++++.+|++++.  + ++|+|+|+++|++.+.+++. +|+|+++
T Consensus       297 ~i~g~~~~~---~~~~~~~~~li~~g~i~~~--~-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  353 (360)
T PLN02586        297 LVGGSDIGG---IKETQEMLDFCAKHNITAD--I-ELIRMDEINTAMERLAKSDVRYRFVIDV  353 (360)
T ss_pred             EEEEcCcCC---HHHHHHHHHHHHhCCCCCc--E-EEEeHHHHHHHHHHHHcCCCcEEEEEEc
Confidence            888876432   3578999999999987653  4 68999999999999998875 5999976

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-49  Score=378.61  Aligned_cols=339  Identities=23%  Similarity=0.352  Sum_probs=283.8

Q ss_pred             eeeeeecCCCCCeEEEEeecCCC-CCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++++++. ++++++|.|+| .++||+|||.++++|++|++.+.+.. ...+|.++|||++|+|+++|+++++|++|
T Consensus         1 Mka~~~~~~~~-~~~~~~~~P~~~~~~evlV~v~~~gi~~~D~~~~~~~~-~~~~p~i~G~e~~G~V~~vG~~v~~~~vG   78 (347)
T PRK10309          1 MKSVVNDTDGI-VRVAESPIPEIKHQDDVLVKVASSGLCGSDIPRIFKNG-AHYYPITLGHEFSGYVEAVGSGVDDLHPG   78 (347)
T ss_pred             CceEEEeCCCc-eEEEECCCCCCCCCCEEEEEEEEEEEchhcHHHHhCCC-CCCCCcccccceEEEEEEeCCCCCCCCCC
Confidence            69999999876 99999999997 59999999999999999987532211 12358899999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |+|++.+..+|+.|.+|..|+++.|.....   .|...+|                   +|+||+.++.+.++++|++++
T Consensus        79 d~V~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~s  136 (347)
T PRK10309         79 DAVACVPLLPCFTCPECLRGFYSLCAKYDF---IGSRRDG-------------------GNAEYIVVKRKNLFALPTDMP  136 (347)
T ss_pred             CEEEECCCcCCCCCcchhCcCcccCCCcce---eccCCCC-------------------ccceeEEeehHHeEECcCCCC
Confidence            999999999999999999999999976432   3433344                   999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      +++|+.+. .+.+++.+ .....+.++++|||+|+|++|++++|+|+.+|++.|+++++++++.++++++|+++++++++
T Consensus       137 ~~~aa~~~-~~~~~~~~-~~~~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~  214 (347)
T PRK10309        137 IEDGAFIE-PITVGLHA-FHLAQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSRE  214 (347)
T ss_pred             HHHhhhhh-HHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcc
Confidence            99998875 55667775 46678899999999999999999999999999955889999999999999999999998776


Q ss_pred             CCCccHHHHHHhhcCC-Ccc-EEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccc-cCHHHHHhcCcEEEEeeec
Q 016507          256 CGDKSVSQIIIDMTDG-GAD-YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g-~~d-vvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~i~g~~~~  332 (388)
                         .. .+.+.+++.+ ++| ++|||+|....+..++++++++ |+++.+|.......++ .++..++.+++++.|++.+
T Consensus       215 ---~~-~~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~  289 (347)
T PRK10309        215 ---MS-APQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPR-AQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMN  289 (347)
T ss_pred             ---cC-HHHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCCCcccChhhhhHHhhcCcEEEEEecc
Confidence               34 4557777766 888 9999999987789999999997 9999999754321111 1223567789999998754


Q ss_pred             CCC--ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          333 GLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       333 ~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ...  ..++++++++++++|.++++++++++|+|+|+++|++.+.++.. +|+|+++
T Consensus       290 ~~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  346 (347)
T PRK10309        290 YSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDLAGNPMPGKVLLQI  346 (347)
T ss_pred             ccCCcchhHHHHHHHHHHcCCCCchhheEEEeeHHHHHHHHHHHhcCCcceEEEEeC
Confidence            221  23578899999999999888999999999999999999988765 5999975

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=100.00  E-value=1.8e-49  Score=377.15  Aligned_cols=335  Identities=24%  Similarity=0.403  Sum_probs=285.9

Q ss_pred             eeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccC-CCCCCCCcccccceeEEEEEecCCCCCCCCCCEE
Q 016507           20 AIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (388)
Q Consensus        20 ~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V   98 (388)
                      +++.+++++++++++|.|+|+++||+|||.++++|++|++.+.+. .+...+|.++|||++|+|+++|++++.+ +||+|
T Consensus         2 ~~~~~~g~~~~~~~~p~P~~~~~evlVrv~~~gic~sD~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~-~GdrV   80 (349)
T TIGR03201         2 WMMTEPGKPMVKTRVEIPELGAGDVVVKVAGCGVCHTDLSYYYMGVRTNHALPLALGHEISGRVIQAGAGAASW-IGKAV   80 (349)
T ss_pred             ceEecCCCCceEEeccCCCCCCCeEEEEEEEEeecccchHHHcCCCCccCCCCeeccccceEEEEEeCCCcCCC-CCCEE
Confidence            456777777899999999999999999999999999999887443 3334568999999999999999999887 99999


Q ss_pred             eecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCC------
Q 016507           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP------  172 (388)
Q Consensus        99 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~------  172 (388)
                      ++.+..+|+.|.+|+++++++|.....   .|...+|                   +|+||+.++.++++++|+      
T Consensus        81 ~~~~~~~cg~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~ae~~~v~~~~~~~ip~~~~~~~  138 (349)
T TIGR03201        81 IVPAVIPCGECELCKTGRGTICRAQKM---PGNDMQG-------------------GFASHIVVPAKGLCVVDEARLAAA  138 (349)
T ss_pred             EECCCCCCCCChhhhCcCcccCCCCCc---cCcCCCC-------------------cccceEEechHHeEECCccccccc
Confidence            999999999999999999999976543   3333334                   999999999999999999      


Q ss_pred             CCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      ++++++++.+.+.+.|+|+++. ...+++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.++++++|++++++
T Consensus       139 ~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~~i~  216 (349)
T TIGR03201       139 GLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKGFGADLTLN  216 (349)
T ss_pred             CCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceEec
Confidence            8999999999999999999764 5789999999999999999999999999999 8999999999999999999999998


Q ss_pred             CCCCCCccHHHHHHhhcCC-Ccc----EEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEE
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GAD----YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  327 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~d----vvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  327 (388)
                      +.+.+.+++.+.+++++++ ++|    +||||+|+...+..++++++++ |+++.+|....  ...+++..++.+++++.
T Consensus       217 ~~~~~~~~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~~~~~~~~~~  293 (349)
T TIGR03201       217 PKDKSAREVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHG-GTLVVVGYTMA--KTEYRLSNLMAFHARAL  293 (349)
T ss_pred             CccccHHHHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcC-CeEEEECcCCC--CcccCHHHHhhcccEEE
Confidence            7662223577778888877 776    8999999988788999999997 99999997532  34566667777788888


Q ss_pred             EeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEEee
Q 016507          328 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  386 (388)
Q Consensus       328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv~~  386 (388)
                      |++...   .++++++++++++|++.+.++++ +|||+|+++||+.+.+++.. |+++++
T Consensus       294 g~~~~~---~~~~~~~~~~i~~g~i~~~~~i~-~~~l~~~~~A~~~~~~~~~~~k~~~~~  349 (349)
T TIGR03201       294 GNWGCP---PDRYPAALDLVLDGKIQLGPFVE-RRPLDQIEHVFAAAHHHKLKRRAILTP  349 (349)
T ss_pred             EEecCC---HHHHHHHHHHHHcCCCCcccceE-EecHHHHHHHHHHHHcCCccceEEecC
Confidence            876322   45799999999999988877774 79999999999999887754 888753

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=2.8e-49  Score=377.85  Aligned_cols=332  Identities=24%  Similarity=0.362  Sum_probs=275.1

Q ss_pred             eeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCCEE
Q 016507           19 AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (388)
Q Consensus        19 a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V   98 (388)
                      +++..+...++++.+++.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++||||
T Consensus         9 ~~~~~~~~~~l~~~~~~~p~~~~~eVlVkV~a~gic~sD~~~~~G~~~~~~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV   88 (375)
T PLN02178          9 GWAANDESGVLSPFHFSRRENGENDVTVKILFCGVCHSDLHTIKNHWGFSRYPIIPGHEIVGIATKVGKNVTKFKEGDRV   88 (375)
T ss_pred             EEEEccCCCCceEEeecCCCCCCCeEEEEEEEEcCchHHHHHhcCCCCCCCCCcccCceeeEEEEEECCCCCccCCCCEE
Confidence            34444544458888999999999999999999999999999998876444568999999999999999999999999999


Q ss_pred             eecCCC-CCCCCccccCCCCCCCCCCCCCC----CCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           99 IPHFLA-DCTECVGCRSKKGNLCSAFPFKI----SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        99 ~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~----~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      ++.+.. .|+.|.+|++|++++|.+..+..    ..|...+                   |+|+||+.++.++++++|++
T Consensus        89 ~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~lP~~  149 (375)
T PLN02178         89 GVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQ-------------------GGYSDVIVVDHRFVLSIPDG  149 (375)
T ss_pred             EEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCC-------------------CccccEEEEchHHeEECCCC
Confidence            876655 69999999999999999765310    0121122                   49999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcC-CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch-HHHHHHHcCCcEEE
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFV  251 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~-~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~-~~~~~~~lga~~v~  251 (388)
                      +++++|+++++...|+|+++..... .++|++|||.|+|++|++++|+|+.+|+ +|++++.+++ +.++++++|+++++
T Consensus       150 ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~Vi~~~~~~~~~~~~a~~lGa~~~i  228 (375)
T PLN02178        150 LPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNGLGGLGHIAVKIGKAFGL-RVTVISRSSEKEREAIDRLGADSFL  228 (375)
T ss_pred             CCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEcccHHHHHHHHHHHHcCC-eEEEEeCChHHhHHHHHhCCCcEEE
Confidence            9999999999999999987644332 3689999999999999999999999999 7888877654 47888899999999


Q ss_pred             cCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          252 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      ++.+   .   +.+.+.++ ++|+||||+|....+..++++++++ |+++.+|...  ....+++..++.+++++.|++.
T Consensus       229 ~~~~---~---~~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~-G~iv~vG~~~--~~~~~~~~~~~~~~~~i~g~~~  298 (375)
T PLN02178        229 VTTD---S---QKMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVS-GKLVALGLPE--KPLDLPIFPLVLGRKMVGGSQI  298 (375)
T ss_pred             cCcC---H---HHHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCC-CEEEEEccCC--CCCccCHHHHHhCCeEEEEeCc
Confidence            8654   2   34555543 7999999999987689999999997 9999999743  3456777788888999999865


Q ss_pred             cCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          332 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..   .++++++++++.+|++.+.  + ++|||+|+++|++.+.+++. +|+|+++
T Consensus       299 ~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gkvvi~~  348 (375)
T PLN02178        299 GG---MKETQEMLEFCAKHKIVSD--I-ELIKMSDINSAMDRLAKSDVRYRFVIDV  348 (375)
T ss_pred             cC---HHHHHHHHHHHHhCCCccc--E-EEEeHHHHHHHHHHHHcCCCceEEEEEe
Confidence            43   3578999999999987654  5 67999999999999998875 5999876

>cd08230 glucose_DH Glucose dehydrogenase

Probab=100.00  E-value=3.1e-49  Score=376.47  Aligned_cols=335  Identities=24%  Similarity=0.333  Sum_probs=267.6

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC---CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++..++.+++++++|.|+|+++||||||.|++||++|++.++|.++.   ..+|.++|||++|+|+++|++ +.|+
T Consensus         1 mka~~~~~~~~~l~~~~~p~p~~~~~evlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~i~G~e~~G~V~~vG~~-~~~~   79 (355)
T cd08230           1 MKAIAVKPGKPGVRVVDIPEPEPTPGEVLVRTLEVGVCGTDREIVAGEYGTAPPGEDFLVLGHEALGVVEEVGDG-SGLS   79 (355)
T ss_pred             CceeEecCCCCCCeEEeCCCCCCCCCeEEEEEEEEEeccccHHHHcCCCCCCCCCCCCeeeccccceEEEEecCC-CCCC
Confidence            689999865444999999999999999999999999999999999987532   246889999999999999999 9999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||||++.+...|+.|.+|++++.+.|+..... ..|...                  ..|+|+||+.++.+.++++|++
T Consensus        80 vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~-~~g~~~------------------~~G~~aey~~~~~~~~~~~P~~  140 (355)
T cd08230          80 PGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYT-ERGIKG------------------LHGFMREYFVDDPEYLVKVPPS  140 (355)
T ss_pred             CCCEEEeccccCCCcChhhhCcCcccCCCccee-ccCcCC------------------CCccceeEEEeccccEEECCCC
Confidence            999999988889999999999999999864421 112210                  1249999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHH------hcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC---CchHHHHHHH
Q 016507          174 VPPNRACLLSCGVSTGVGAAWR------TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKR  244 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~------~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~---~~~~~~~~~~  244 (388)
                      ++ +. +.+..++.+++.++..      ...+++|++|||+|+|++|++++|+|+++|+ +|+++++   +++|.+++++
T Consensus       141 ~~-~~-a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~  217 (355)
T cd08230         141 LA-DV-GVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE  217 (355)
T ss_pred             CC-cc-eeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence            99 44 3444466555543321      2235789999999999999999999999999 8999987   6789999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccC----HHHHH
Q 016507          245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS----SFEVL  320 (388)
Q Consensus       245 lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~----~~~~~  320 (388)
                      +|++. +++.+   +++.+ . + ..+++|+||||+|+...+..+++.++++ |+++.+|........+++    ...++
T Consensus       218 ~Ga~~-v~~~~---~~~~~-~-~-~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~  289 (355)
T cd08230         218 LGATY-VNSSK---TPVAE-V-K-LVGEFDLIIEATGVPPLAFEALPALAPN-GVVILFGVPGGGREFEVDGGELNRDLV  289 (355)
T ss_pred             cCCEE-ecCCc---cchhh-h-h-hcCCCCEEEECcCCHHHHHHHHHHccCC-cEEEEEecCCCCCccccChhhhhhhHh
Confidence            99987 46554   34433 2 1 2238999999999887789999999997 999999976442344455    34567


Q ss_pred             hcCcEEEEeeecCCCccCcHHHHHHHHhCCCC----CCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          321 HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL----ELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       321 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      .+++++.|+....   .++++++++++.++.+    .++++++++|+++|+.+|++.+.++. .|+||++
T Consensus       290 ~k~~~i~g~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~-~K~v~~~  355 (355)
T cd08230         290 LGNKALVGSVNAN---KRHFEQAVEDLAQWKYRWPGVLERLITRRVPLEEFAEALTEKPDGE-IKVVIEW  355 (355)
T ss_pred             hcCcEEEEecCCc---hhhHHHHHHHHHhcccccccchHHheeeeecHHHHHHHHHhcccCC-eEEEeeC
Confidence            7899999985432   4678999999988862    36678899999999999999887544 5999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=7.7e-49  Score=369.28  Aligned_cols=321  Identities=21%  Similarity=0.256  Sum_probs=273.4

Q ss_pred             eeecCCCC----CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           20 AIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        20 ~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      +.+..++.    +++++++|.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~~~~~g~~~~~~l~~~~~p~P~~~~~evlVkv~~~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~G   81 (329)
T TIGR02822         2 WEVERPGPIEDGPLRFVERPVPRPGPGELLVRVRACGVCRTDLHVSEGDLPVHRPRVTPGHEVVGEVAGRGADAGGFAVG   81 (329)
T ss_pred             eeeecCCcCCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCCCCCCCccCCcceEEEEEEECCCCcccCCC
Confidence            44555542    38899999999999999999999999999999999876544457899999999999999999999999


Q ss_pred             CEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        96 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      |+|++.+. ..|+.|.+|..++++.|.+..+   .|+..+|                   +|+||+.++.++++++|+++
T Consensus        82 d~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~lP~~~  139 (329)
T TIGR02822        82 DRVGIAWLRRTCGVCRYCRRGAENLCPASRY---TGWDTDG-------------------GYAEYTTVPAAFAYRLPTGY  139 (329)
T ss_pred             CEEEEcCccCcCCCChHHhCcCcccCCCccc---CCcccCC-------------------cceeEEEeccccEEECCCCC
Confidence            99987664 4699999999999999987654   4443444                   99999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++++++.+++.+.|||+++ ..+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++|.++++++|++++++..
T Consensus       140 ~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~~vi~~~  217 (329)
T TIGR02822       140 DDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAASAGGAY  217 (329)
T ss_pred             CHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCceecccc
Confidence            9999999999999999987 46889999999999999999999999999999 799999999999999999999998854


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                      +   ..         .+++|+++++.+....+..++++++++ |+++.+|..... ...++...++.+++++.+++... 
T Consensus       218 ~---~~---------~~~~d~~i~~~~~~~~~~~~~~~l~~~-G~~v~~G~~~~~-~~~~~~~~~~~~~~~i~g~~~~~-  282 (329)
T TIGR02822       218 D---TP---------PEPLDAAILFAPAGGLVPPALEALDRG-GVLAVAGIHLTD-TPPLNYQRHLFYERQIRSVTSNT-  282 (329)
T ss_pred             c---cC---------cccceEEEECCCcHHHHHHHHHhhCCC-cEEEEEeccCcc-CCCCCHHHHhhCCcEEEEeecCC-
Confidence            3   11         126899999988877799999999997 999999974322 23566667777899999886432 


Q ss_pred             CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          335 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                        +.++.++++++.+|++.   +++++|+|+|+++|++.+.++.. +|+||
T Consensus       283 --~~~~~~~~~l~~~g~i~---~i~~~~~l~~~~~A~~~~~~~~~~Gkvvl  328 (329)
T TIGR02822       283 --RADAREFLELAAQHGVR---VTTHTYPLSEADRALRDLKAGRFDGAAVL  328 (329)
T ss_pred             --HHHHHHHHHHHHhCCCe---eEEEEEeHHHHHHHHHHHHcCCCceEEEe
Confidence              35688899999999774   46799999999999999988776 49887

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=100.00  E-value=4.9e-48  Score=369.17  Aligned_cols=349  Identities=28%  Similarity=0.411  Sum_probs=295.0

Q ss_pred             eeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCC------
Q 016507           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG------   91 (388)
Q Consensus        18 ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~------   91 (388)
                      ||+++.++++.+++++++.|+|+++||+|||.++++|++|+....|.++...+|.++|||++|+|+++|+++++      
T Consensus         2 ka~~~~~~~~~l~~~~~~~p~~~~~evlV~v~a~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~~~~   81 (361)
T cd08231           2 RAAVLTGPGKPLEIREVPLPDLEPGAVLVRVRLAGVCGSDVHTVAGRRPRVPLPIILGHEGVGRVVALGGGVTTDVAGEP   81 (361)
T ss_pred             eEEEEcCCCCCCEEEeccCCCCCCCeEEEEEEEEeecCccHHHhcCCCCCCCCCcccccCCceEEEEeCCCccccccCCc
Confidence            78999998867999999999999999999999999999999999887653467889999999999999999986      


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCC-CCccccccCCceecccccccceeeeEEeecC-ceEE
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-HVVK  169 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~-g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~-~~~~  169 (388)
                      |++||+|+..+..+|+.|..|+.+..+.|.....   .|...+ +.             .-..|+|++|+.++.+ ++++
T Consensus        82 ~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~---~~~~~~~~~-------------~~~~g~~a~~~~v~~~~~~~~  145 (361)
T cd08231          82 LKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKK---YGHEASCDD-------------PHLSGGYAEHIYLPPGTAIVR  145 (361)
T ss_pred             cCCCCEEEEcccCCCCCChhHhCcCccccccchh---ccccccccC-------------CCCCcccceEEEecCCCceEE
Confidence            9999999999999999999999999999987654   332211 00             0012599999999986 7999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +|++++..++++++++++|||+++.+.....++++|||+|+|++|++++++|+.+|+++|+++++++++.++++++|++.
T Consensus       146 lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~  225 (361)
T cd08231         146 VPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADA  225 (361)
T ss_pred             CCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCe
Confidence            99999999999998999999998866666679999999998999999999999999978999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEE
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  328 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  328 (388)
                      +++.++....++...+.+.+++ ++|++|||+|+...+..++++++++ |+++.+|........+++...++.+++++.+
T Consensus       226 vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~  304 (361)
T cd08231         226 TIDIDELPDPQRRAIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG-GTYVLVGSVAPAGTVPLDPERIVRKNLTIIG  304 (361)
T ss_pred             EEcCcccccHHHHHHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC-CEEEEEcCCCCCCccccCHHHHhhcccEEEE
Confidence            9987652112234567788877 8999999999876689999999997 9999999754334456666667888999998


Q ss_pred             eeecCCCccCcHHHHHHHHhCC--CCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          329 SLFGGLKAKSDIPILLKRYMDK--ELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      ++...   .++++++++++.++  .+.+.++++++|+++++++|++.++++..+|+||++
T Consensus       305 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~~~k~vi~~  361 (361)
T cd08231         305 VHNYD---PSHLYRAVRFLERTQDRFPFAELVTHRYPLEDINEALELAESGTALKVVIDP  361 (361)
T ss_pred             cccCC---chhHHHHHHHHHhccCcCCchhheeeeeeHHHHHHHHHHHHcCCceEEEeCC
Confidence            86432   45789999999888  566777889999999999999999888777999864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=100.00  E-value=1.3e-47  Score=367.07  Aligned_cols=370  Identities=43%  Similarity=0.772  Sum_probs=299.3

Q ss_pred             CCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCC
Q 016507           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        12 ~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      .+-.+|||+++..++++++++++|.|++.++||+||+.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++.
T Consensus         3 ~~~~~~~a~~~~~~~~~~~l~~~p~p~~~~~~vlvkv~~~gi~~~D~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~   81 (373)
T cd08299           3 GKVIKCKAAVLWEPKKPFSIEEIEVAPPKAHEVRIKIVATGICRSDDHVVSGKLV-TPFPVILGHEAAGIVESVGEGVTT   81 (373)
T ss_pred             cccceeEEEEEecCCCCcEEEEeecCCCCCCEEEEEEEEEEcCcccHHHhcCCCC-CCCCccccccceEEEEEeCCCCcc
Confidence            3456799999998887799999999999999999999999999999999988763 356889999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      |++||+|++.+..+|+.|.+|+.++.+.|++.......|...++..++. -+|.+.+...+.|+|+||+.++.++++++|
T Consensus        82 ~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~e~~~v~~~~~~~lP  160 (373)
T cd08299          82 VKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFT-CKGKPIHHFLGTSTFSEYTVVDEIAVAKID  160 (373)
T ss_pred             CCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccc-cCCcccccccCCCcccceEEecccceeeCC
Confidence            9999999998889999999999999999987543211122211111110 011111111235799999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      +++++++++++.+++.|||.++...++++++++|||+|+|++|++++++|+.+|+.+|+++++++++.+.++++|+++++
T Consensus       161 ~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i  240 (373)
T cd08299         161 AAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECI  240 (373)
T ss_pred             CCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEe
Confidence            99999999999999999999887888999999999998899999999999999986799999999999999999999999


Q ss_pred             cCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHh-hcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          252 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC-RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      +..+ ...++.+.+.+++.+++|++|||+|+...+..++..+ +.+ |+++.+|.......++++... +.++..+.+++
T Consensus       241 ~~~~-~~~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~-G~~v~~g~~~~~~~~~~~~~~-~~~~~~i~~~~  317 (373)
T cd08299         241 NPQD-YKKPIQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGY-GVSVIVGVPPSSQNLSINPML-LLTGRTWKGAV  317 (373)
T ss_pred             cccc-cchhHHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCC-CEEEEEccCCCCceeecCHHH-HhcCCeEEEEE
Confidence            8765 1123667777776668999999999866677777765 465 999999975332334555432 34678899988


Q ss_pred             ecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          331 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      .+.+...+++.++++.+.++.+.+.++++++|+++++.+|++.+.+.+..|+++.+
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~a~~~~~~~~~~k~~~~~  373 (373)
T cd08299         318 FGGWKSKDSVPKLVADYMAKKFNLDPLITHTLPFEKINEGFDLLRSGKSIRTVLTF  373 (373)
T ss_pred             ecCCccHHHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHhCCCcceEEEeC
Confidence            77665556788888888888777777889999999999999999887777888863

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=4.9e-49  Score=334.32  Aligned_cols=319  Identities=23%  Similarity=0.290  Sum_probs=278.4

Q ss_pred             CCCCcceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCC
Q 016507           11 AGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      ...|+..|.+++++.|.+  ++++++|.|+|.++|++||-.|+|+|..|+.+.+|.+.+.+.|++||-|.+|+|+++|++
T Consensus         3 ~~~p~~~k~i~v~e~Ggydvlk~ed~pv~~papgel~iknka~GlNfid~y~RkGlY~~~plPytpGmEaaGvVvAvG~g   82 (336)
T KOG1197|consen    3 AASPPLLKCIVVTEFGGYDVLKLEDRPVPPPAPGELTIKNKACGLNFIDLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEG   82 (336)
T ss_pred             CCCCchheEEEEeccCCcceEEEeeecCCCCCCCceEEeehhcCccHHHHHHhccccCCCCCCcCCCcccceEEEEecCC
Confidence            345777899999988865  999999999999999999999999999999999999977788999999999999999999


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      |+++++||||+..                            +  +                   +|.|+|++.+|...++
T Consensus        83 vtdrkvGDrVayl----------------------------~--~-------------------~g~yaee~~vP~~kv~  113 (336)
T KOG1197|consen   83 VTDRKVGDRVAYL----------------------------N--P-------------------FGAYAEEVTVPSVKVF  113 (336)
T ss_pred             ccccccccEEEEe----------------------------c--c-------------------chhhheeccccceeec
Confidence            9999999999742                            1  1                   3599999999999999


Q ss_pred             EcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       169 ~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      ++|+.+++++||++...++|||..+++..++++|++||++.| |++|+++.|++++.|+ .+|++.++.+|.+.+++.|+
T Consensus       114 ~vpe~i~~k~aaa~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a-~tI~~asTaeK~~~akenG~  192 (336)
T KOG1197|consen  114 KVPEAITLKEAAALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGA-HTIATASTAEKHEIAKENGA  192 (336)
T ss_pred             cCCcccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCc-EEEEEeccHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999965 9999999999999999 99999999999999999999


Q ss_pred             cEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEE
Q 016507          248 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKIL  326 (388)
Q Consensus       248 ~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i  326 (388)
                      +|.++++.   +++.+.+.++|+| |+|+++|.+|.+. +..++.+|++. |.++.+|+.. ...-+++...+-.+++++
T Consensus       193 ~h~I~y~~---eD~v~~V~kiTngKGVd~vyDsvG~dt-~~~sl~~Lk~~-G~mVSfG~as-gl~~p~~l~~ls~k~l~l  266 (336)
T KOG1197|consen  193 EHPIDYST---EDYVDEVKKITNGKGVDAVYDSVGKDT-FAKSLAALKPM-GKMVSFGNAS-GLIDPIPLNQLSPKALQL  266 (336)
T ss_pred             cceeeccc---hhHHHHHHhccCCCCceeeeccccchh-hHHHHHHhccC-ceEEEecccc-CCCCCeehhhcChhhhhh
Confidence            99999998   9999999999999 9999999999988 99999999998 9999999854 333345555555566665


Q ss_pred             EEeeecCCC-ccCc----HHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          327 MGSLFGGLK-AKSD----IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       327 ~g~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      ....+.+|. .+..    ..+++.++-+|.+++.  |.|+|||+++.+|+.+++++.. +|+++.+.
T Consensus       267 vrpsl~gYi~g~~el~~~v~rl~alvnsg~lk~~--I~~~ypls~vadA~~diesrktvGkvlLlp~  331 (336)
T KOG1197|consen  267 VRPSLLGYIDGEVELVSYVARLFALVNSGHLKIH--IDHVYPLSKVADAHADIESRKTVGKVLLLPG  331 (336)
T ss_pred             ccHhhhcccCCHHHHHHHHHHHHHHhhcCcccee--eeeecchHHHHHHHHHHHhhhccceEEEeCC
Confidence            544333332 2222    3467778888977666  9999999999999999999876 59998653

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=100.00  E-value=1.1e-47  Score=365.44  Aligned_cols=335  Identities=25%  Similarity=0.427  Sum_probs=290.4

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCC---C--------CCCCCcccccceeEEEEEe
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---F--------PAVFPRILGHEAIGVVESV   85 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~--------~~~~p~v~G~e~~G~Vv~v   85 (388)
                      |||+++.++++ ++++++|.|+|+++||+||+.++++|++|++.+.+..   +        ...+|.++|||++|+|+++
T Consensus         1 mka~~~~~~~~-l~~~~~~~p~~~~~evlV~v~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~p~i~G~e~~G~V~~v   79 (351)
T cd08233           1 MKAARYHGRKD-IRVEEVPEPPVKPGEVKIKVAWCGICGSDLHEYLDGPIFIPTEGHPHLTGETAPVTLGHEFSGVVVEV   79 (351)
T ss_pred             CceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEECccchHhhcCCCccccccccccccccCCCceecccceEEEEEe
Confidence            79999998876 9999999999999999999999999999987665321   1        0136889999999999999


Q ss_pred             cCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC
Q 016507           86 GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (388)
Q Consensus        86 G~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~  165 (388)
                      |++++.|++||+|+..+..+|+.|.+|++++.++|....+   .|+..                  ..|+|++|+.++.+
T Consensus        80 G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------~~g~~a~~~~~~~~  138 (351)
T cd08233          80 GSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGF---IGLGG------------------GGGGFAEYVVVPAY  138 (351)
T ss_pred             CCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCce---eccCC------------------CCCceeeEEEechH
Confidence            9999999999999998889999999999999999975432   22211                  02499999999999


Q ss_pred             ceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc
Q 016507          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (388)
Q Consensus       166 ~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l  245 (388)
                      .++++|+++++++++.+ .++.|||.++ ..++++++++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++
T Consensus       139 ~~~~lP~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~  216 (351)
T cd08233         139 HVHKLPDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEEL  216 (351)
T ss_pred             HeEECcCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            99999999999998876 5788999977 778899999999999999999999999999997899999999999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCc
Q 016507          246 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  324 (388)
Q Consensus       246 ga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  324 (388)
                      |++.++++++   .++.+.+++++++ ++|++|||+|....+..++++++++ |+++.+|...  ...+++...++.+++
T Consensus       217 ga~~~i~~~~---~~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~  290 (351)
T cd08233         217 GATIVLDPTE---VDVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPR-GTAVNVAIWE--KPISFNPNDLVLKEK  290 (351)
T ss_pred             CCCEEECCCc---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-CEEEEEccCC--CCCccCHHHHHhhCc
Confidence            9999999887   7788889888877 7999999999876689999999997 9999999754  345677777888899


Q ss_pred             EEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchH-HHHHHHHhcCce--eEEEE
Q 016507          325 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI-NSAFDLLIKGKC--LRCVI  384 (388)
Q Consensus       325 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~-~~A~~~~~~~~~--~kvvv  384 (388)
                      ++.|++...   .+++++++++++++.+++.++++++|+++|+ ++|++.+.++..  +|+||
T Consensus       291 ~i~g~~~~~---~~~~~~~~~~~~~g~l~~~~~i~~~~~l~e~~~~a~~~~~~~~~~~~k~v~  350 (351)
T cd08233         291 TLTGSICYT---REDFEEVIDLLASGKIDAEPLITSRIPLEDIVEKGFEELINDKEQHVKILV  350 (351)
T ss_pred             EEEEEeccC---cchHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHHHhCCCCceEEEe
Confidence            999986432   4689999999999998888888999999996 799999888764  69887

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=100.00  E-value=9.6e-48  Score=366.00  Aligned_cols=341  Identities=22%  Similarity=0.337  Sum_probs=282.2

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      .+++|+++..+++++++++++.|+|+++||+|||.+++||++|++.+.|.++...+|.++|||++|+|+++|+++++|++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~eVlVrv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~Vv~vG~~v~~~~~   87 (357)
T PLN02514          8 KKTTGWAARDPSGHLSPYTYTLRKTGPEDVVIKVIYCGICHTDLHQIKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKFTV   87 (357)
T ss_pred             ceEEEEEEecCCCCceEEeecCCCCCCCcEEEEEEEeccChHHHHhhcCCcCcCCCCccCCceeeEEEEEECCCcccccC
Confidence            34899999999998999999999999999999999999999999999887654457899999999999999999999999


Q ss_pred             CCEEeecCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           95 GDVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        95 Gd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      ||+|++.+.. .|+.|.+|.+++.+.|....+....++ ..|              ....|+|+||+.++...++++|++
T Consensus        88 Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~-~~g--------------~~~~G~~aey~~v~~~~~~~iP~~  152 (357)
T PLN02514         88 GDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVY-TDG--------------KPTQGGFASAMVVDQKFVVKIPEG  152 (357)
T ss_pred             CCEEEEcCccccCCCChhHhCCCcccCCCccccccccc-cCC--------------ccCCCccccEEEEchHHeEECCCC
Confidence            9999876644 699999999999999987532100000 011              111359999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga~~v~~  252 (388)
                      +++++|+.+++.+.|||.++......++|++|+|+|+|++|++++|+|+.+|+ +|+++++++++.+. ++++|++++++
T Consensus       153 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~-~vi~~~~~~~~~~~~~~~~Ga~~~i~  231 (357)
T PLN02514        153 MAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSDKKREEALEHLGADDYLV  231 (357)
T ss_pred             CCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhcCCcEEec
Confidence            99999999999999999987655556899999999989999999999999999 78888777766654 46699998887


Q ss_pred             CCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          253 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      +.+   .   +.+.+.+. ++|++|||+|....+..++++++++ |+++.+|...  ....++...++.+++++.|++..
T Consensus       232 ~~~---~---~~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~  301 (357)
T PLN02514        232 SSD---A---AEMQEAAD-SLDYIIDTVPVFHPLEPYLSLLKLD-GKLILMGVIN--TPLQFVTPMLMLGRKVITGSFIG  301 (357)
T ss_pred             CCC---h---HHHHHhcC-CCcEEEECCCchHHHHHHHHHhccC-CEEEEECCCC--CCCcccHHHHhhCCcEEEEEecC
Confidence            654   2   23444443 7999999999876689999999997 9999999753  23567777788889999998754


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      .   ..+++++++++++|++  .+++ ++|||+|+.+|++.+.++.. +|+|++++
T Consensus       302 ~---~~~~~~~~~~~~~g~l--~~~i-~~~~l~~~~~A~~~~~~~~~~gk~v~~~~  351 (357)
T PLN02514        302 S---MKETEEMLEFCKEKGL--TSMI-EVVKMDYVNTAFERLEKNDVRYRFVVDVA  351 (357)
T ss_pred             C---HHHHHHHHHHHHhCCC--cCcE-EEEcHHHHHHHHHHHHcCCCceeEEEEcc
Confidence            3   3578999999999965  4456 68999999999999998876 59999875

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=100.00  E-value=4e-47  Score=363.08  Aligned_cols=364  Identities=33%  Similarity=0.591  Sum_probs=298.2

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      |+|||+++.+++.++++++.+.|++.++||+|||.++++|++|++...|.++ ..+|.++|||++|+|+++|+++++|++
T Consensus         1 ~~~~a~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~a~gi~~~d~~~~~g~~~-~~~p~v~G~e~~G~V~~vG~~v~~~~~   79 (365)
T cd08278           1 MKTTAAVVREPGGPFVLEDVELDDPRPDEVLVRIVATGICHTDLVVRDGGLP-TPLPAVLGHEGAGVVEAVGSAVTGLKP   79 (365)
T ss_pred             CccEEeeeccCCCcceEEEeecCCCCCCeEEEEEEEeecCcccHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCC
Confidence            6799999999877799999999999999999999999999999999988654 346889999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceec-ccccccceeeeEEeecCceEEcCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH-HFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~-~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      ||+|++.+. .|++|.+|+.+++++|.........|..++|---..+.++.+++ +....|+|++|+.++.++++++|++
T Consensus        80 Gd~V~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~~~iP~~  158 (365)
T cd08278          80 GDHVVLSFA-SCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHGHFFGQSSFATYAVVHERNVVKVDKD  158 (365)
T ss_pred             CCEEEEccc-CCCCChHHhCCCcccccCcccccccccccCCcccccccCCcccccccccccceeeEEEecchhEEECCCC
Confidence            999998764 89999999999999998644222223222220000000000000 1223579999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++++++.+++.+.||+.++.....++++++|||+|+|++|++++++|+..|+++|+++++++++.++++++|+++++++
T Consensus       159 ~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~  238 (365)
T cd08278         159 VPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINP  238 (365)
T ss_pred             CCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecC
Confidence            99999999999999999988888889999999999889999999999999999779999999999999999999999998


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      ++   .++.+.+.+.+++++|+++||+|....+..++++++++ |+++.+|.........+++..++.+++.+.++....
T Consensus       239 ~~---~~~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  314 (365)
T cd08278         239 KE---EDLVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPR-GTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGD  314 (365)
T ss_pred             CC---cCHHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccC-CEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCC
Confidence            76   67778888887339999999999766689999999997 999999975333445677777667899998876544


Q ss_pred             CCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEe
Q 016507          334 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  385 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~  385 (388)
                      ....+.+++++++++++++.+.+++ +.|+++++++|++.+.++...|+||+
T Consensus       315 ~~~~~~~~~~~~~l~~g~l~~~~~~-~~~~l~~~~~a~~~~~~~~~~k~~~~  365 (365)
T cd08278         315 SVPQEFIPRLIELYRQGKFPFDKLV-TFYPFEDINQAIADSESGKVIKPVLR  365 (365)
T ss_pred             cChHHHHHHHHHHHHcCCCChHHhe-EEecHHHHHHHHHHHHCCCceEEEEC
Confidence            3334567889999999987553444 68999999999999988877798874

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=100.00  E-value=4.5e-48  Score=366.01  Aligned_cols=323  Identities=21%  Similarity=0.228  Sum_probs=259.6

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC----CCCCcccccceeEEEEEecCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----AVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      |..||++++++++ ++++++|.|+ +++||||||.++|||++|+++++|.+..    ..+|.++|||++|+|+++|.+  
T Consensus         1 ~~~~~~~~~~~~~-~~~~~~~~P~-~~~eVlVkv~a~gIc~sD~~~~~G~~~~~~~~~~~P~i~GhE~~G~V~~~g~~--   76 (341)
T cd08237           1 MINQVYRLVRPKF-FEVTYEEENL-REDWVIVRPTYLSICHADQRYYQGNRSPEALKKKLPMALIHEGIGVVVSDPTG--   76 (341)
T ss_pred             CcccceEEeccce-EEEeecCCCC-CCCeEEEEEEEEEEcCccHHHHcCCCCcccccCCCCeeccceeEEEEEeeCCC--
Confidence            4578999999987 9999999995 9999999999999999999999987532    357999999999999998864  


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEc
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l  170 (388)
                      .|++||||++.+...|+ |+.|  +..++|.+..+   .|...+|                   +|+||+.+|.++++++
T Consensus        77 ~~~vGdrV~~~~~~~~~-~~~~--~~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  131 (341)
T cd08237          77 TYKVGTKVVMVPNTPVE-KDEI--IPENYLPSSRF---RSSGYDG-------------------FMQDYVFLPPDRLVKL  131 (341)
T ss_pred             ccCCCCEEEECCCCCch-hccc--chhccCCCcce---eEecCCC-------------------ceEEEEEEchHHeEEC
Confidence            79999999998887777 5456  45677876543   2333334                   9999999999999999


Q ss_pred             CCCCCccccccccchhhhhHHHHHH--hcCCCCCCEEEEEccchhHHHHHHHHHH-cCCcEEEEEcCCchHHHHHHHcCC
Q 016507          171 DPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       171 P~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~VlI~Gag~vG~~ai~la~~-~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      |+++++++||.+. +++++|+++..  .+.+++|++|||+|+|++|++++|+++. .|..+|++++++++|+++++..++
T Consensus       132 P~~l~~~~aa~~~-~~~~a~~a~~~~~~~~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~  210 (341)
T cd08237         132 PDNVDPEVAAFTE-LVSVGVHAISRFEQIAHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADE  210 (341)
T ss_pred             CCCCChHHhhhhc-hHHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCc
Confidence            9999999887665 88888887643  3457889999999999999999999986 665589999999999999987665


Q ss_pred             cEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCC---HHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcC
Q 016507          248 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL---ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG  323 (388)
Q Consensus       248 ~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  323 (388)
                      +..++       ++.       .+ ++|+|||++|+   +..+..++++++++ |+++.+|...  .+.++++..++.++
T Consensus       211 ~~~~~-------~~~-------~~~g~d~viD~~G~~~~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~  273 (341)
T cd08237         211 TYLID-------DIP-------EDLAVDHAFECVGGRGSQSAINQIIDYIRPQ-GTIGLMGVSE--YPVPINTRMVLEKG  273 (341)
T ss_pred             eeehh-------hhh-------hccCCcEEEECCCCCccHHHHHHHHHhCcCC-cEEEEEeecC--CCcccCHHHHhhCc
Confidence            53321       111       12 79999999994   45689999999997 9999999742  34567777788899


Q ss_pred             cEEEEeeecCCCccCcHHHHHHHHhCC---CCCCCcceeeeEecc---hHHHHHHHHhcCceeEEEEeeC
Q 016507          324 KILMGSLFGGLKAKSDIPILLKRYMDK---ELELDKFVTHEMKFE---EINSAFDLLIKGKCLRCVIWMG  387 (388)
Q Consensus       324 ~~i~g~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~l~---~~~~A~~~~~~~~~~kvvv~~~  387 (388)
                      +++.|+....   .++++++++++.++   ...++++++++|+++   ++++|++.+.++..+|+||+++
T Consensus       274 ~~i~g~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~l~~l~~~~~a~~~~~~~~~gKvvi~~~  340 (341)
T cd08237         274 LTLVGSSRST---REDFERAVELLSRNPEVAEYLRKLVGGVFPVRSINDIHRAFESDLTNSWGKTVMEWE  340 (341)
T ss_pred             eEEEEecccC---HHHHHHHHHHHHhCCcccCChHHHhccccccccHHHHHHHHHHHhhcCcceEEEEee
Confidence            9999985322   35789999999998   346788999999985   6666666665555579999875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=100.00  E-value=6.2e-47  Score=361.73  Aligned_cols=362  Identities=41%  Similarity=0.766  Sum_probs=307.3

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      +||+++.+++.++++++.+.|.+++++|+||+.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++.+++||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~~vlv~v~~~~i~~~d~~~~~g~~~-~~~~~i~g~e~~G~V~~vG~~v~~~~~Gd   79 (365)
T cd05279           1 CKAAVLWEKGKPLSIEEIEVAPPKAGEVRIKVVATGVCHTDLHVIDGKLP-TPLPVILGHEGAGIVESIGPGVTTLKPGD   79 (365)
T ss_pred             CceeEEecCCCCcEEEEeecCCCCCCeEEEEEEEeeecchhHHHhcCCCC-CCCCcccccceeEEEEEeCCCcccCCCCC
Confidence            47899998887799999999999999999999999999999999888754 34678999999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      +|+..+...|+.|.+|+.++.++|+........|...+|..++.. +|.+.++..+.|+|++|+.++.+.++++|+++++
T Consensus        80 ~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~v~~~~~~~lP~~~~~  158 (365)
T cd05279          80 KVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTC-KGKPIHHFLGTSTFAEYTVVSEISLAKIDPDAPL  158 (365)
T ss_pred             EEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeec-cCCccccccccccccceEEecCCceEECCCCCCH
Confidence            999988889999999999999999886654445544444333321 2222333344679999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      ++++.+.+++.+||.++...+++.++++|||+|+|++|++++++|+.+|+..|+++++++++.++++++|++++++.++ 
T Consensus       159 ~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~-  237 (365)
T cd05279         159 EKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKAKQLGATECINPRD-  237 (365)
T ss_pred             HHhhHhccchhHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCeeccccc-
Confidence            9999999999999998888889999999999988999999999999999966888888999999999999999998776 


Q ss_pred             CCc--cHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhh-cCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          257 GDK--SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR-KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       257 ~~~--~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~-~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                        .  ++.+.+.+++++++|++||++|....+..++++++ ++ |+++.+|.........++...+ .++..+.|.+...
T Consensus       238 --~~~~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~  313 (365)
T cd05279         238 --QDKPIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGG-GTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGG  313 (365)
T ss_pred             --ccchHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCC-CEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccC
Confidence              4  67777888775599999999997666899999999 97 9999998753334566777676 6678888887766


Q ss_pred             CCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEe
Q 016507          334 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  385 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~  385 (388)
                      +...+.+.++++++.++.+++.++++++|+++++.+|++.+.+++..|++|+
T Consensus       314 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~~~  365 (365)
T cd05279         314 WKSKDSVPKLVALYRQKKFPLDELITHVLPFEEINDGFDLMRSGESIRTILT  365 (365)
T ss_pred             CchHhHHHHHHHHHHcCCcchhHheeeeecHHHHHHHHHHHhCCCceeeeeC
Confidence            6666789999999999988876678899999999999999988777788763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=100.00  E-value=4e-46  Score=354.69  Aligned_cols=343  Identities=26%  Similarity=0.317  Sum_probs=286.3

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++.+++. +++.+.+.|.+.++||+|||.++++|++|++.+.+.+....+|.++|||++|+|+++|+++++|++||
T Consensus         1 mka~~~~~~~~-~~l~~~~~p~~~~~evlIkv~a~~i~~~d~~~~~g~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd   79 (351)
T cd08285           1 MKAFAMLGIGK-VGWIEKPIPVCGPNDAIVRPTAVAPCTSDVHTVWGGAPGERHGMILGHEAVGVVEEVGSEVKDFKPGD   79 (351)
T ss_pred             CceEEEccCCc-cEEEECCCCCCCCCeEEEEEEEEEechhhHHHhcCCCCCCCCCcccCcceEEEEEEecCCcCccCCCC
Confidence            79999999886 88899999999999999999999999999998887765556689999999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC--ceEEcCCCC
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV  174 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~lP~~~  174 (388)
                      +|+..+..+|+.|..|..++.+.|........++...+                   |+|++|+.++.+  .++++|+++
T Consensus        80 ~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~-------------------g~~~~y~~v~~~~~~~~~lP~~~  140 (351)
T cd08285          80 RVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKD-------------------GVFAEYFHVNDADANLAPLPDGL  140 (351)
T ss_pred             EEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCC-------------------cceeEEEEcchhhCceEECCCCC
Confidence            99988878999999999999999976431101111122                   499999999974  899999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++++++.++..+.||++++ ..+.++++++|||+|+|++|++++|+|+.+|+..|+++++++++.++++++|++++++++
T Consensus       141 ~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~  219 (351)
T cd08285         141 TDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYK  219 (351)
T ss_pred             CHHHhhhhccchhhHHHHH-HccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCC
Confidence            9999999998999999974 678899999999998899999999999999996799999999999999999999999987


Q ss_pred             CCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH--HHhcCcEEEEeee
Q 016507          255 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE--VLHSGKILMGSLF  331 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~--~~~~~~~i~g~~~  331 (388)
                      +   .++.+.+.+++.+ ++|++|||+|+...+..++++++++ |+++.+|.........++...  ...+...+.+.+.
T Consensus       220 ~---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  295 (351)
T cd08285         220 N---GDVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPG-GTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLC  295 (351)
T ss_pred             C---CCHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcC-CEEEEecccCCCceeecChhhhhhhccccEEEEeec
Confidence            7   6778888887776 8999999999877689999999997 999999975433333444222  2234566665432


Q ss_pred             cCCCccCcHHHHHHHHhCCCCCCCcc-eeeeEecchHHHHHHHHhcCc--eeEEEEee
Q 016507          332 GGLKAKSDIPILLKRYMDKELELDKF-VTHEMKFEEINSAFDLLIKGK--CLRCVIWM  386 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~l~~~~~A~~~~~~~~--~~kvvv~~  386 (388)
                      .  ...++++++++++.+|++.+..+ +++.|+++++++|++.+++++  .+|++|++
T Consensus       296 ~--~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~  351 (351)
T cd08285         296 P--GGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF  351 (351)
T ss_pred             C--CccccHHHHHHHHHcCCCChhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence            1  12467999999999998887443 455699999999999998876  35999874

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=100.00  E-value=4.3e-46  Score=360.82  Aligned_cols=333  Identities=20%  Similarity=0.224  Sum_probs=270.2

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCccccccc-ccCCCC------CCCCcccccceeEEEEEecC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP------AVFPRILGHEAIGVVESVGE   87 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~------~~~p~v~G~e~~G~Vv~vG~   87 (388)
                      |+|||+++.+++. ++++++|.|+|+++||+|||.++|||++|++.+ .|....      ..+|.++|||++|+|+++|+
T Consensus         1 m~~~a~~~~~~~~-l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~g~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~   79 (410)
T cd08238           1 MKTKAWRMYGKGD-LRLEKFELPEIADDEILVRVISDSLCFSTWKLALQGSDHKKVPNDLAKEPVILGHEFAGTILKVGK   79 (410)
T ss_pred             CCcEEEEEEcCCc-eEEEecCCCCCCCCeEEEEEEEeccCCCCHHHHhcCCccccCcccccCCCceeccccEEEEEEeCC
Confidence            6799999999986 999999999999999999999999999999976 453211      24688999999999999999


Q ss_pred             CCC-CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC-
Q 016507           88 NVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA-  165 (388)
Q Consensus        88 ~v~-~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~-  165 (388)
                      +|+ .|++||||++.+...|+.|.+|..              +|+..+|                   +|+||+.++.+ 
T Consensus        80 ~v~~~~~vGdrV~~~~~~~c~~~~~c~~--------------~g~~~~G-------------------~~aey~~v~~~~  126 (410)
T cd08238          80 KWQGKYKPGQRFVIQPALILPDGPSCPG--------------YSYTYPG-------------------GLATYHIIPNEV  126 (410)
T ss_pred             CccCCCCCCCEEEEcCCcCCCCCCCCCC--------------ccccCCC-------------------cceEEEEecHHh
Confidence            998 599999999988888998887721              2222334                   99999999986 


Q ss_pred             ---ceEEcCCCCCccccccccc-h-hhhhHHHH--------HHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcC--CcEE
Q 016507          166 ---HVVKVDPTVPPNRACLLSC-G-VSTGVGAA--------WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCG--ATRI  229 (388)
Q Consensus       166 ---~~~~lP~~~~~~~aa~~~~-~-~~ta~~~l--------~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g--~~~V  229 (388)
                         +++++|+++++++|+.+.. . ..+++.++        .+.+++++|++|+|+|+ |++|++++|+|+.+|  +.+|
T Consensus       127 ~~~~~~~lP~~l~~~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~V  206 (410)
T cd08238         127 MEQDCLLIYEGDGYAEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLL  206 (410)
T ss_pred             ccCCeEECCCCCCHHHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceE
Confidence               6899999999999886531 1 11233221        24567899999999985 999999999999975  4579


Q ss_pred             EEEcCCchHHHHHHHc--------CCc-EEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCce
Q 016507          230 IGVDVISEKFEIGKRF--------GVT-EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGK  299 (388)
Q Consensus       230 i~~~~~~~~~~~~~~l--------ga~-~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~  299 (388)
                      ++++++++|+++++++        |++ .++++++  ..++.+.+++++++ ++|++||++|....+..++++++++ |+
T Consensus       207 i~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~--~~~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~-G~  283 (410)
T cd08238         207 VVTDVNDERLARAQRLFPPEAASRGIELLYVNPAT--IDDLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPD-GC  283 (410)
T ss_pred             EEEcCCHHHHHHHHHhccccccccCceEEEECCCc--cccHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccC-Ce
Confidence            9999999999999997        776 5677643  14577888888887 8999999999877799999999997 98


Q ss_pred             EEEEccCC-CCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc
Q 016507          300 TIVLGVDQ-PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK  378 (388)
Q Consensus       300 ~v~~g~~~-~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~  378 (388)
                      ++.++... .....++++..++.+++++.|+....   ..+++++++++++|++++.++++++|||+++++|++.+..+.
T Consensus       284 ~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~li~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~  360 (410)
T cd08238         284 LNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGN---TDDMKEAIDLMAAGKLNPARMVTHIGGLNAAAETTLNLPGIP  360 (410)
T ss_pred             EEEEEccCCCCccccccHHHhhhcCcEEEEeCCCC---HHHHHHHHHHHHcCCCchhhcEEEEecHHHHHHHHHHhhccC
Confidence            88775432 12234677777888999999986332   357899999999999999889999999999999999998444


Q ss_pred             eeEEEEeeC
Q 016507          379 CLRCVIWMG  387 (388)
Q Consensus       379 ~~kvvv~~~  387 (388)
                      .+|+||.++
T Consensus       361 ~gKvvl~~~  369 (410)
T cd08238         361 GGKKLIYTQ  369 (410)
T ss_pred             CceEEEECC
Confidence            569999764

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>PRK10083 putative oxidoreductase; Provisional

Probab=100.00  E-value=1.5e-45  Score=349.13  Aligned_cols=335  Identities=21%  Similarity=0.417  Sum_probs=282.7

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++.+++. ++++++|.|+|+++||+||+.++++|++|++.+.|..+...+|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~~~gi~~~d~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~Gd   79 (339)
T PRK10083          1 MKSIVIEKPNS-LAIEERPIPQPAAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEGVDAARIGE   79 (339)
T ss_pred             CeEEEEecCCe-eEEEeccCCCCCCCeEEEEEEEEEEcccchHHHcCCCCcCCCCcccccceEEEEEEECCCCccCCCCC
Confidence            68999999885 99999999999999999999999999999999888765556789999999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      +|++.+..+|+.|.+|..+++++|.+..+   .++.++                   |+|++|+.++..+++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~~~  137 (339)
T PRK10083         80 RVAVDPVISCGHCYPCSIGKPNVCTSLVV---LGVHRD-------------------GGFSEYAVVPAKNAHRIPDAIAD  137 (339)
T ss_pred             EEEEccccCCCCCccccCcCcccCCCCce---EEEccC-------------------CcceeeEEechHHeEECcCCCCH
Confidence            99999999999999999999999975442   222223                   49999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHH-cCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~-~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      ++++ +...+.+++. +....++++|++|||+|+|++|++++|+|+. +|++.|+++++++++.++++++|++++++.++
T Consensus       138 ~~a~-~~~~~~~a~~-~~~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~  215 (339)
T PRK10083        138 QYAV-MVEPFTIAAN-VTGRTGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQ  215 (339)
T ss_pred             HHHh-hhchHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCcc
Confidence            8876 4457788885 5677889999999999999999999999996 69967888999999999999999999999876


Q ss_pred             CCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          256 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                         ..+.+.+...  + ++|++||++|+...+..++++++++ |+++.+|....  ...++...+..+++++.+...   
T Consensus       216 ---~~~~~~~~~~--g~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~---  284 (339)
T PRK10083        216 ---EPLGEALEEK--GIKPTLIIDAACHPSILEEAVTLASPA-ARIVLMGFSSE--PSEIVQQGITGKELSIFSSRL---  284 (339)
T ss_pred             ---ccHHHHHhcC--CCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC--CceecHHHHhhcceEEEEEec---
Confidence               5566666432  3 5789999999876799999999997 99999997432  333444455567777777643   


Q ss_pred             CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc--eeEEEEeeCC
Q 016507          335 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVIWMGE  388 (388)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~--~~kvvv~~~~  388 (388)
                       ..+.+++++++++++++.+.++++++|+++++++|++.+.++.  .+|+|+.+.|
T Consensus       285 -~~~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~  339 (339)
T PRK10083        285 -NANKFPVVIDWLSKGLIDPEKLITHTFDFQHVADAIELFEKDQRHCCKVLLTFAE  339 (339)
T ss_pred             -ChhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence             2357899999999998877666789999999999999987543  4699998865

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.6e-45  Score=346.58  Aligned_cols=331  Identities=24%  Similarity=0.384  Sum_probs=285.4

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++.+++.+++++++|.|+++++||+||+.++++|++|+..+.|..+...+|.++|||++|+|+++|+++++|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd   80 (333)
T cd08296           1 YKAVQVTEPGGPLELVERDVPLPGPGEVLIKVEACGVCHSDAFVKEGAMPGLSYPRVPGHEVVGRIDAVGEGVSRWKVGD   80 (333)
T ss_pred             CeEEEEccCCCCceEEeccCCCCCCCEEEEEEEEEecchHHHHHHhCCCCCCCCCcccCcceeEEEEEECCCCccCCCCC
Confidence            79999999965699999999999999999999999999999999988764445688999999999999999999999999


Q ss_pred             EEeecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        97 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      +|++.+ ...|++|.+|..|+.+.|.....   .|+..+|                   +|++|+.++.+.++++|++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~---~~~~~~g-------------------~~a~~~~v~~~~~~~lp~~~~  138 (333)
T cd08296          81 RVGVGWHGGHCGTCDACRRGDFVHCENGKV---TGVTRDG-------------------GYAEYMLAPAEALARIPDDLD  138 (333)
T ss_pred             EEEeccccCCCCCChhhhCcCcccCCCCCc---cCcccCC-------------------cceeEEEEchhheEeCCCCCC
Confidence            998754 46799999999999999987664   3333334                   999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      +.+++.+++.+.|||+++. ...+.++++|||+|+|++|++++++|+.+|+ +|+++++++++.++++++|+++++++++
T Consensus       139 ~~~aa~l~~~~~ta~~~~~-~~~~~~~~~vlV~g~g~iG~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~~  216 (333)
T cd08296         139 AAEAAPLLCAGVTTFNALR-NSGAKPGDLVAVQGIGGLGHLAVQYAAKMGF-RTVAISRGSDKADLARKLGAHHYIDTSK  216 (333)
T ss_pred             HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHcCCcEEecCCC
Confidence            9999999999999999774 4589999999999999999999999999999 8999999999999999999999999876


Q ss_pred             CCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC
Q 016507          256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  335 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  335 (388)
                         .++.+.++++  +++|++||++|....+..++++++++ |+++.+|...  ...+++...++.+++++.+.....  
T Consensus       217 ---~~~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~~--  286 (333)
T cd08296         217 ---EDVAEALQEL--GGAKLILATAPNAKAISALVGGLAPR-GKLLILGAAG--EPVAVSPLQLIMGRKSIHGWPSGT--  286 (333)
T ss_pred             ---ccHHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccC-CEEEEEecCC--CCCCcCHHHHhhcccEEEEeCcCC--
Confidence               5677777665  37999999998666689999999997 9999999754  345677677778999999986322  


Q ss_pred             ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          336 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                       ..+++.+++++.++.+.  +++ +.|+++++.+|++.+.+++. +|+|++
T Consensus       287 -~~~~~~~~~~~~~~~l~--~~v-~~~~~~~~~~a~~~~~~~~~~gk~v~~  333 (333)
T cd08296         287 -ALDSEDTLKFSALHGVR--PMV-ETFPLEKANEAYDRMMSGKARFRVVLT  333 (333)
T ss_pred             -HHHHHHHHHHHHhCCCC--ceE-EEEEHHHHHHHHHHHHCCCCceeEEeC
Confidence             35788889998888554  445 68999999999999998776 599875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=100.00  E-value=3.1e-44  Score=343.09  Aligned_cols=361  Identities=43%  Similarity=0.700  Sum_probs=296.5

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++.+++.++++.++|.|++++++|+||+.++++|++|+..+.|.++ ..+|.++|+|++|+|+++|++++.|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd   79 (363)
T cd08279           1 MRAAVLHEVGKPLEIEEVELDDPGPGEVLVRIAAAGLCHSDLHVVTGDLP-APLPAVLGHEGAGVVEEVGPGVTGVKPGD   79 (363)
T ss_pred             CeEEEEecCCCCceEEEeeCCCCCCCeEEEEEEEeecCcHHHHHhcCCCC-CCCCccccccceEEEEEeCCCccccCCCC
Confidence            79999999987899999999999999999999999999999998888665 35678999999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      +|+..+..+|++|.+|++++.+.|...... -.|.-.++..++.. -|.......+.|+|++|+.++.+.++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~  157 (363)
T cd08279          80 HVVLSWIPACGTCRYCSRGQPNLCDLGAGI-LGGQLPDGTRRFTA-DGEPVGAMCGLGTFAEYTVVPEASVVKIDDDIPL  157 (363)
T ss_pred             EEEECCCCCCCCChhhcCCCcccCcccccc-cccccCCCcccccc-cCccccccccCccceeeEEeccccEEECCCCCCh
Confidence            999999999999999999999999754210 00000000000000 0000000123469999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      ++++.+++.+.|||.+++...++.++++|||+|+|++|++++++|+..|+++|+++++++++.++++.+|++++++.+. 
T Consensus       158 ~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g~~~vv~~~~-  236 (363)
T cd08279         158 DRAALLGCGVTTGVGAVVNTARVRPGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFGATHTVNASE-  236 (363)
T ss_pred             HHeehhcchhHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhCCeEEeCCCC-
Confidence            9999999999999998888888999999999988999999999999999955999999999999999999999998877 


Q ss_pred             CCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC
Q 016507          257 GDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  335 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  335 (388)
                        .++...+.+++.+ ++|++||+++....+..++++++++ |+++.+|.........++...+..++..+.++.+....
T Consensus       237 --~~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (363)
T cd08279         237 --DDAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKG-GTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSAN  313 (363)
T ss_pred             --ccHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcC-CeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcC
Confidence              6777888888765 8999999999766689999999997 99999986543345567776666678888887654433


Q ss_pred             ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEE
Q 016507          336 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  384 (388)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv  384 (388)
                      ..+.++++++++.++.+.+..++.++|+++++++|++.+.+++..|.||
T Consensus       314 ~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~  362 (363)
T cd08279         314 PRRDIPRLLDLYRAGRLKLDELVTRRYSLDEINEAFADMLAGENARGVI  362 (363)
T ss_pred             cHHHHHHHHHHHHcCCCCcceeEEEEEcHHHHHHHHHHHhcCCceeEEe
Confidence            4567899999999998876666789999999999999998877666655

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=100.00  E-value=3e-45  Score=341.86  Aligned_cols=303  Identities=19%  Similarity=0.278  Sum_probs=244.0

Q ss_pred             ceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccC-cccccccccCCCC---CCCCcccccceeEEEEEecCCCCC
Q 016507           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLC-HSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        16 ~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~-~~D~~~~~g~~~~---~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      +|||+++.+++. ++++++|.|+|+++||||||.+++|| ++|++.+.|.++.   ..+|.++|||++|+|+++|+++ +
T Consensus         1 ~~ka~~~~~~~~-l~~~e~~~p~~~~~evlVkv~~~gi~~~~D~~~~~G~~~~~~~~~~P~i~GhE~~G~V~~vG~~v-~   78 (308)
T TIGR01202         1 KTQAIVLSGPNQ-IELREVTLTPPSPGDLVVEIWYSGISTGTEKLFWNGLMPPFPGMGYPLVPGYESVGRVVEAGPDT-G   78 (308)
T ss_pred             CceEEEEeCCCe-EEEEEecCCCCCCCeEEEEEEEEeeccCchhHHhcCCCCCCCCCCCCccCcceeEEEEEEecCCC-C
Confidence            479999998876 99999999999999999999999996 7999988887643   3579999999999999999998 6


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      |++||||++.    |..|..|..+                 .                   .|+|+||+.++.+.++++|
T Consensus        79 ~~vGdrV~~~----~~~c~~~~~~-----------------~-------------------~G~~aey~~v~~~~~~~ip  118 (308)
T TIGR01202        79 FRPGDRVFVP----GSNCYEDVRG-----------------L-------------------FGGASKRLVTPASRVCRLD  118 (308)
T ss_pred             CCCCCEEEEe----Cccccccccc-----------------c-------------------CCcccceEEcCHHHceeCC
Confidence            9999999863    2233222110                 0                   1499999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      ++++++. +.++ .+.|||+++.+ . ..++++|||+|+|++|++++|+|+++|++.|++++.++++++.+..+   +++
T Consensus       119 ~~~~~~~-a~~~-~~~~a~~~~~~-~-~~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~---~~i  191 (308)
T TIGR01202       119 PALGPQG-ALLA-LAATARHAVAG-A-EVKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY---EVL  191 (308)
T ss_pred             CCCCHHH-Hhhh-HHHHHHHHHHh-c-ccCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc---ccc
Confidence            9999864 5555 57899997644 3 34688999999999999999999999996677787777777665543   455


Q ss_pred             cCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          252 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      |+.+   .         .+.++|+||||+|+...+..++++++++ |+++.+|...  ....+++..++.+++++.++..
T Consensus       192 ~~~~---~---------~~~g~Dvvid~~G~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~~~~~  256 (308)
T TIGR01202       192 DPEK---D---------PRRDYRAIYDASGDPSLIDTLVRRLAKG-GEIVLAGFYT--EPVNFDFVPAFMKEARLRIAAE  256 (308)
T ss_pred             Chhh---c---------cCCCCCEEEECCCCHHHHHHHHHhhhcC-cEEEEEeecC--CCcccccchhhhcceEEEEecc
Confidence            5432   1         1238999999999987789999999997 9999999753  2345666677788899888753


Q ss_pred             cCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc-eeEEEEe
Q 016507          332 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-CLRCVIW  385 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~kvvv~  385 (388)
                      ..   .++++++++++++|++++.++++++|||+|+++|++.+.++. .+|++|+
T Consensus       257 ~~---~~~~~~~~~l~~~g~i~~~~~it~~~~l~~~~~A~~~~~~~~~~~Kv~~~  308 (308)
T TIGR01202       257 WQ---PGDLHAVRELIESGALSLDGLITHQRPASDAAEAYMTAFSDPDCLKMILD  308 (308)
T ss_pred             cc---hhHHHHHHHHHHcCCCChhhccceeecHHHHHHHHHHHhcCcCceEEEeC
Confidence            22   467999999999999999889999999999999999876654 4699874

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=5.3e-44  Score=339.30  Aligned_cols=338  Identities=28%  Similarity=0.417  Sum_probs=290.9

Q ss_pred             eeeeeecCCCCCeEEEEeecCCC-CCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++.+++. +++.++|.|+| .++||+||+.++++|++|+..+.|.++...+|.++|||++|+|+++|++++.+++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~ev~v~v~a~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~G   79 (345)
T cd08286           1 MKALVYHGPGK-ISWEDRPKPTIQEPTDAIVKMLKTTICGTDLHILKGDVPTVTPGRILGHEGVGVVEEVGSAVTNFKVG   79 (345)
T ss_pred             CceEEEecCCc-eeEEecCCCCCCCCCeEEEEEEEeeecchhhHHHcCCCCCCCCCceecccceEEEEEeccCccccCCC
Confidence            68999998886 99999999986 89999999999999999999998876655568899999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC--ceEEcCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~lP~~  173 (388)
                      |+|++.+..+|+.|.+|..+..+.|....+.  .|...+                   |+|++|+.++.+  .++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~~~lp~~  138 (345)
T cd08286          80 DRVLISCISSCGTCGYCRKGLYSHCESGGWI--LGNLID-------------------GTQAEYVRIPHADNSLYKLPEG  138 (345)
T ss_pred             CEEEECCcCCCCCChHHHCcCcccCCCcccc--cccccC-------------------CeeeeEEEcccccCceEECCCC
Confidence            9999998889999999999999999865431  222223                   499999999987  89999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      ++..+++.+++.++|||.++....++.++++|||+|+|++|.+++|+|+.+|+.+|+++++++++.++++++|++.++++
T Consensus       139 ~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~  218 (345)
T cd08286         139 VDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGATHTVNS  218 (345)
T ss_pred             CCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCceecc
Confidence            99999999999999999877778889999999999889999999999999994489999888999999999999999998


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      ++   .++.+.+.+++.+ ++|++|||++....+..+++.++++ |+++.+|...  ....+++..++.+++++.+....
T Consensus       219 ~~---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~  292 (345)
T cd08286         219 AK---GDAIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPG-GHIANVGVHG--KPVDLHLEKLWIKNITITTGLVD  292 (345)
T ss_pred             cc---ccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCC-cEEEEecccC--CCCCcCHHHHhhcCcEEEeecCc
Confidence            76   5677788888776 8999999999877689999999997 9999999643  23556666667789998875322


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcC---ceeEEEEee
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG---KCLRCVIWM  386 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~---~~~kvvv~~  386 (388)
                          .+.++.++++++++.+.+.++++++|+++++++|++.+.+.   ...|+||++
T Consensus       293 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~  345 (345)
T cd08286         293 ----TNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIEKAYDTFSAAAKHKALKVIIDF  345 (345)
T ss_pred             ----hhhHHHHHHHHHcCCCChHHcEEeEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence                24688899999999887777778999999999999998875   345999874

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=100.00  E-value=7.1e-44  Score=342.92  Aligned_cols=354  Identities=26%  Similarity=0.390  Sum_probs=289.8

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCC-CCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++.++++ +++.++|.|+|. +++|+||+.++++|++|+..+.|.++..++|.++|||++|+|+++|++++++++|
T Consensus         1 m~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   79 (386)
T cd08283           1 MKALVWHGKGD-VRVEEVPDPKIEDPTDAIVRVTATAICGSDLHLYHGYIPGMKKGDILGHEFMGVVEEVGPEVRNLKVG   79 (386)
T ss_pred             CeeEEEecCCC-ceEEeCCCCCCCCCCeEEEEEEEEecchhhhhhhcCCCCCCCCCccccccceEEEEEeCCCCCCCCCC
Confidence            79999998865 999999999984 9999999999999999999999987665678999999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCC-C---CCCCCCCCccccccCCceecccccccceeeeEEeecC--ceEE
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKI-S---PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVK  169 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~-~---~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~  169 (388)
                      |+|+..+..+|+.|.+|..+..++|++..... +   +|....|...+.    ...  ....|+|++|+.++.+  .+++
T Consensus        80 d~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~g~~~~~~~v~~~~~~~~~  153 (386)
T cd08283          80 DRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYS----HLT--GGYAGGQAEYVRVPFADVGPFK  153 (386)
T ss_pred             CEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccc----ccc--CCCCCeeEEEEEcccccCeEEE
Confidence            99999888899999999999999998654321 0   111100000000    000  0113699999999987  8999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +|+++++++|++++..++|||+++ ..+++.++++|||+|+|++|++++++|+..|+.+|+++++++++.+++++++...
T Consensus       154 lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~~  232 (386)
T cd08283         154 IPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGAE  232 (386)
T ss_pred             CCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcE
Confidence            999999999999999999999987 7888999999999988999999999999999856999999999999999984446


Q ss_pred             EEcCCCCCCc-cHHHHHHhhcCC-CccEEEEccCCH---------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          250 FVNSKNCGDK-SVSQIIIDMTDG-GADYCFECVGLA---------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       250 v~~~~~~~~~-~~~~~i~~~~~g-~~dvvid~~g~~---------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +++..+   . ++.+.+++++.+ ++|++|||+|+.                     ..+..++++++++ |+++.+|..
T Consensus       233 vi~~~~---~~~~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~g~~  308 (386)
T cd08283         233 TINFEE---VDDVVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKG-GTVSIIGVY  308 (386)
T ss_pred             EEcCCc---chHHHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccC-CEEEEEcCC
Confidence            777765   4 478888888877 899999999753                     3478899999997 999999875


Q ss_pred             CCCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc--eeEEEE
Q 016507          307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVI  384 (388)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~--~~kvvv  384 (388)
                      ... ...++....+.+++.+.+....   ..+.++++++++.++++.+.+++++.|+++++++|++.+.++.  .+|+||
T Consensus       309 ~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~  384 (386)
T cd08283         309 GGT-VNKFPIGAAMNKGLTLRMGQTH---VQRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVL  384 (386)
T ss_pred             CCC-cCccCHHHHHhCCcEEEeccCC---chHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEe
Confidence            332 3445655667788888887422   2457889999999998877667789999999999999988776  359998


Q ss_pred             ee
Q 016507          385 WM  386 (388)
Q Consensus       385 ~~  386 (388)
                      ++
T Consensus       385 ~~  386 (386)
T cd08283         385 KP  386 (386)
T ss_pred             cC
Confidence            63

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=100.00  E-value=1.3e-43  Score=335.86  Aligned_cols=333  Identities=29%  Similarity=0.447  Sum_probs=287.1

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC---CCCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+++.++++.+.+.|++.+++|+||+.++++|++|+....|.++   ...+|.++|+|++|+|+++|+++..|+
T Consensus         1 ~ka~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~   80 (340)
T cd05284           1 MKAARLYEYGKPLRLEDVPVPEPGPGQVLVRVGGAGVCHSDLHVIDGVWGGILPYKLPFTLGHENAGWVEEVGSGVDGLK   80 (340)
T ss_pred             CeeeEeccCCCCceEEeCCCCCCCCCeEEEEEEEEeecchhHHHHcCCCcccccCCCCeecccceeEEEEEeCCCCCcCc
Confidence            69999998877799999999999999999999999999999998887654   345688999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+..+...|+.|..|+.+.+++|.+...   .|+..+|                   +|++|+.++.++++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~P~~  138 (340)
T cd05284          81 EGDPVVVHPPWGCGTCRYCRRGEENYCENARF---PGIGTDG-------------------GFAEYLLVPSRRLVKLPRG  138 (340)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCCCCcc---cCccCCC-------------------cceeeEEecHHHeEECCCC
Confidence            99999998888999999999999999988775   4444444                   9999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHh-cCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      +++++++.+++.+.|||+++... ..+.++++|||+|+|.+|++++++|+.+| + +|+++++++++.+.++++|+++++
T Consensus       139 ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g~~~vg~~~~~~a~~~g~~-~v~~~~~~~~~~~~~~~~g~~~~~  217 (340)
T cd05284         139 LDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIGVGGLGHIAVQILRALTPA-TVIAVDRSEEALKLAERLGADHVL  217 (340)
T ss_pred             CCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEcCcHHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHhCCcEEE
Confidence            99999999999999999987665 46888999999999789999999999999 6 899998999999999999999999


Q ss_pred             cCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          252 NSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      ++++   . +.+.+++++++ ++|+++|++|+......++++++++ |+++.+|....   ..++....+.+++.+.+..
T Consensus       218 ~~~~---~-~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~---~~~~~~~~~~~~~~~~~~~  289 (340)
T cd05284         218 NASD---D-VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKG-GRYVIVGYGGH---GRLPTSDLVPTEISVIGSL  289 (340)
T ss_pred             cCCc---c-HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEEcCCCC---CccCHHHhhhcceEEEEEe
Confidence            9876   5 78888888876 8999999999866689999999997 99999986432   3444444456788888875


Q ss_pred             ecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          331 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..   ..+.+.++++++.++.+.+   ..+.|+++++++|++.+.+++. +|+|+.+
T Consensus       290 ~~---~~~~~~~~~~~l~~g~l~~---~~~~~~~~~~~~a~~~~~~~~~~gkvv~~~  340 (340)
T cd05284         290 WG---TRAELVEVVALAESGKVKV---EITKFPLEDANEALDRLREGRVTGRAVLVP  340 (340)
T ss_pred             cc---cHHHHHHHHHHHHhCCCCc---ceEEEeHHHHHHHHHHHHcCCccceEEecC
Confidence            33   2457889999999997654   3478999999999999988765 4888753

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.9e-43  Score=336.07  Aligned_cols=335  Identities=26%  Similarity=0.430  Sum_probs=281.7

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC---------CCCCcccccceeEEEEEecC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---------AVFPRILGHEAIGVVESVGE   87 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---------~~~p~v~G~e~~G~Vv~vG~   87 (388)
                      |||+++++++. +++++++.|++.+++|+||+.++++|++|+..+.|....         .++|.++|||++|+|+++|+
T Consensus         1 mka~~~~~~~~-~~~~~~~~p~~~~~~v~V~v~a~~i~~~d~~~~~g~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~   79 (350)
T cd08256           1 MRAVVCHGPQD-YRLEEVPVPRPGPGEILVKVEACGICAGDIKCYHGAPSFWGDENQPPYVKPPMIPGHEFVGRVVELGE   79 (350)
T ss_pred             CeeEEEecCCc-eEEEECCCCCCCCCeEEEEEEEEEEcccchhhhcCCCccccccccCccCCCCcccCcceeEEEEEeCC
Confidence            68999998886 999999999999999999999999999999988875311         14577899999999999999


Q ss_pred             CCC--CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC
Q 016507           88 NVD--GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (388)
Q Consensus        88 ~v~--~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~  165 (388)
                      +++  .|++||+|+..+..+|+.|..|..+..+.|....   .+|+...                 ..|+|++|+.++.+
T Consensus        80 ~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~-----------------~~g~~~~~~~~~~~  139 (350)
T cd08256          80 GAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHD---LYGFQNN-----------------VNGGMAEYMRFPKE  139 (350)
T ss_pred             CcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCcc---ceeeccC-----------------CCCcceeeEEcccc
Confidence            999  8999999999999999999999999999996432   2333110                 12499999999988


Q ss_pred             -ceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          166 -HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       166 -~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                       .++++|+++++++++.+ .++.|+|.++ +.+++.++++|||.|+|.+|++++++|+.+|+..|+++++++++.+++++
T Consensus       140 ~~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  217 (350)
T cd08256         140 AIVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLALARK  217 (350)
T ss_pred             cceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHHHHHH
Confidence             57899999999999988 7999999986 77899999999997779999999999999998678889999999999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH-Hhc
Q 016507          245 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV-LHS  322 (388)
Q Consensus       245 lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~  322 (388)
                      +|++++++.++   .++.+.+.+++++ ++|++||++|....+..++++++++ |+++.+|....  ...++...+ ..+
T Consensus       218 ~g~~~v~~~~~---~~~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~  291 (350)
T cd08256         218 FGADVVLNPPE---VDVVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKL-GRFVEFSVFGD--PVTVDWSIIGDRK  291 (350)
T ss_pred             cCCcEEecCCC---cCHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEccCCC--CCccChhHhhccc
Confidence            99999998876   6788888888877 8999999999766688999999997 99999986432  233443333 346


Q ss_pred             CcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          323 GKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       323 ~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                      ++++.++....    ..+.+++++++++.+.+.+++.+.|+++++++|++.+++++. +|+|+
T Consensus       292 ~~~i~~~~~~~----~~~~~~~~~~~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~kvv~  350 (350)
T cd08256         292 ELDVLGSHLGP----YCYPIAIDLIASGRLPTDGIVTHQFPLEDFEEAFELMARGDDSIKVVL  350 (350)
T ss_pred             ccEEEEeccCc----hhHHHHHHHHHcCCCChhHheEEEeEHHHHHHHHHHHHhCCCceEEeC
Confidence            77777765432    468899999999988776567899999999999999988764 48774

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=100.00  E-value=2.2e-43  Score=335.23  Aligned_cols=341  Identities=29%  Similarity=0.430  Sum_probs=285.5

Q ss_pred             eeeeeecCCCCCeEEEEeecCCC-CCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++.+++. +.+.+.|.|.| .+++|+||+.++++|++|++.+.|.++..++|.++|+|++|+|+++|+++++|++|
T Consensus         1 ~ka~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (347)
T cd05278           1 MKALVYLGPGK-IGLEEVPDPKIQGPHDAIVRVTATSICGSDLHIYRGGVPGAKHGMILGHEFVGEVVEVGSDVKRLKPG   79 (347)
T ss_pred             CceEEEecCCc-eEEEEcCCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCCCCCCceeccceEEEEEEECCCccccCCC
Confidence            68999998887 88999999999 99999999999999999999998877656678999999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC--ceEEcCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~lP~~  173 (388)
                      |+|+..+...|+.|.+|..+...+|.......+.|.                   ...|+|++|+.++.+  +++++|++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~g~~~~~~~v~~~~~~~~~lP~~  140 (347)
T cd05278          80 DRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGN-------------------RIDGGQAEYVRVPYADMNLAKIPDG  140 (347)
T ss_pred             CEEEecCCCCCCCChhHhCcCcccCcCCCccccccc-------------------CCCCeeeEEEEecchhCeEEECCCC
Confidence            999999999999999999999999976443211111                   123599999999987  89999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++++++.+++.+.|||+++ ...+++++++|||.|+|++|++++|+|+.+|+.+|+++++++++.++++++|++.++++
T Consensus       141 ~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~~vi~~  219 (347)
T cd05278         141 LPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGATDIINP  219 (347)
T ss_pred             CCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCcEEEcC
Confidence            99999999999999999986 67889999999998889999999999999996578888888889999999999999998


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      ++   .++.+.+++.+++ ++|++||++++...+..++++++++ |+++.+|........... ...+.+++.+.+....
T Consensus       220 ~~---~~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~  294 (347)
T cd05278         220 KN---GDIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPG-GTIANVGVYGKPDPLPLL-GEWFGKNLTFKTGLVP  294 (347)
T ss_pred             Cc---chHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcC-CEEEEEcCCCCCcccCcc-chhhhceeEEEeeccC
Confidence            77   6688888888776 8999999999855589999999997 999999864322111111 2233567777765322


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce--eEEEEee
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVIWM  386 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~--~kvvv~~  386 (388)
                      .   .+.++++++++.++.+.+..++...|+++++.+|++.+..++.  .|+|+++
T Consensus       295 ~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~  347 (347)
T cd05278         295 V---RARMPELLDLIEEGKIDPSKLITHRFPLDDILKAYRLFDNKPDGCIKVVIRP  347 (347)
T ss_pred             c---hhHHHHHHHHHHcCCCChhHcEEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence            1   4678899999999988765556789999999999999887665  4888763

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=100.00  E-value=1.1e-43  Score=307.03  Aligned_cols=320  Identities=21%  Similarity=0.282  Sum_probs=265.1

Q ss_pred             CCCcceeeeeecCCCCC---eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecC
Q 016507           12 GKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGE   87 (388)
Q Consensus        12 ~~~~~~ka~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~   87 (388)
                      .++...|+++|.+.+.|   ++++++++|....++|+||.+|++|||+|+..++|.|+. +++|.+-|+|++|+|+++|+
T Consensus        15 q~~~~~kalvY~~hgdP~kVlql~~~~~p~~~~s~v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs   94 (354)
T KOG0025|consen   15 QMPARSKALVYSEHGDPAKVLQLKNLELPAVPGSDVLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGS   94 (354)
T ss_pred             ccccccceeeecccCCchhhheeecccCCCCCCCceeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecC
Confidence            45666899999999988   888999999887888999999999999999999999987 67899999999999999999


Q ss_pred             CCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCce
Q 016507           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (388)
Q Consensus        88 ~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~  167 (388)
                      ++++|++||+|+...                                                -+.|.|++|.+.+++.+
T Consensus        95 ~vkgfk~Gd~VIp~~------------------------------------------------a~lGtW~t~~v~~e~~L  126 (354)
T KOG0025|consen   95 NVKGFKPGDWVIPLS------------------------------------------------ANLGTWRTEAVFSESDL  126 (354)
T ss_pred             CcCccCCCCeEeecC------------------------------------------------CCCccceeeEeecccce
Confidence            999999999998532                                                22469999999999999


Q ss_pred             EEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH----HHH
Q 016507          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF----EIG  242 (388)
Q Consensus       168 ~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~----~~~  242 (388)
                      +++++.++++.||++.++.+|||.+|....++.+||+|+-.|| +++|.+.+|+|++.|++.|-++ |+....    +.+
T Consensus       127 i~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvV-RdR~~ieel~~~L  205 (354)
T KOG0025|consen  127 IKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVV-RDRPNIEELKKQL  205 (354)
T ss_pred             EEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEe-ecCccHHHHHHHH
Confidence            9999999999999999999999999988999999999999998 9999999999999999555555 555433    345


Q ss_pred             HHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhc
Q 016507          243 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  322 (388)
Q Consensus       243 ~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  322 (388)
                      +.+||++|+...+..........  ....++.+.|+|+|+.. .....+.|.++ |+++.||+ ++.++++++...++.|
T Consensus       206 k~lGA~~ViTeeel~~~~~~k~~--~~~~~prLalNcVGGks-a~~iar~L~~G-gtmvTYGG-MSkqPv~~~ts~lIFK  280 (354)
T KOG0025|consen  206 KSLGATEVITEEELRDRKMKKFK--GDNPRPRLALNCVGGKS-ATEIARYLERG-GTMVTYGG-MSKQPVTVPTSLLIFK  280 (354)
T ss_pred             HHcCCceEecHHHhcchhhhhhh--ccCCCceEEEeccCchh-HHHHHHHHhcC-ceEEEecC-ccCCCcccccchheec
Confidence            66999999965442111111111  11228999999999998 77889999998 99999999 5788999999999999


Q ss_pred             CcEEEEeeecCCCcc--------CcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce--eEEEEeeC
Q 016507          323 GKILMGSLFGGLKAK--------SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVIWMG  387 (388)
Q Consensus       323 ~~~i~g~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~--~kvvv~~~  387 (388)
                      ++.++|+|+..|...        +.+.++.+++.+|++...  -.+..+|++...|++...+...  +|.++.++
T Consensus       281 dl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~~~G~i~~~--~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e  353 (354)
T KOG0025|consen  281 DLKLRGFWVTRWKKEHKSPEERKEMIDELCDLYRRGKLKAP--NCEKVPLADHKTALDAALSKFGKSGKQIIVLE  353 (354)
T ss_pred             cceeeeeeeeehhhccCCcHHHHHHHHHHHHHHHcCeeccc--cceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence            999999999988642        245678889999976544  4467899999999886655433  36666654

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.1e-42  Score=330.36  Aligned_cols=340  Identities=28%  Similarity=0.405  Sum_probs=290.3

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++..++.++++.+.|.|.+.+++|+||+.++++|++|+....|..+...+|.++|+|++|+|+++|++++.|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~~G~~~~~~~~Gd   80 (345)
T cd08260           1 MRAAVYEEFGEPLEIREVPDPEPPPDGVVVEVEACGVCRSDWHGWQGHDPDVTLPHVPGHEFAGVVVEVGEDVSRWRVGD   80 (345)
T ss_pred             CeeEEEecCCCCcEEEEccCCCCCCCeEEEEEEEeeccHHHHHHhcCCCCCCCCCeeeccceeEEEEEECCCCccCCCCC
Confidence            79999998887799999999999999999999999999999999888766556688999999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC--ceEEcCCCC
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTV  174 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~lP~~~  174 (388)
                      +|+..+...|+.|..|+.|..++|.+...   .|+..+                   |+|++|+.++..  +++++|+++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~~~iP~~~  138 (345)
T cd08260          81 RVTVPFVLGCGTCPYCRAGDSNVCEHQVQ---PGFTHP-------------------GSFAEYVAVPRADVNLVRLPDDV  138 (345)
T ss_pred             EEEECCCCCCCCCccccCcCcccCCCCcc---cccCCC-------------------CcceeEEEcccccCceEECCCCC
Confidence            99887778899999999999999997543   233223                   499999999974  899999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++++++.+++.+.|||+++....++.++++|+|+|+|++|++++++|+..|+ +|+++.+++++.+.++++|++++++.+
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g~g~vg~~~~~~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~i~~~  217 (345)
T cd08260         139 DFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHGCGGVGLSAVMIASALGA-RVIAVDIDDDKLELARELGAVATVNAS  217 (345)
T ss_pred             CHHHhhhhccchHHHHHHHHHccCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHhCCCEEEccc
Confidence            9999999999999999988777889999999999999999999999999999 899999999999999999999999876


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCc-cccCHHHHHhcCcEEEEeeecC
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ-LSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      +  ..++.+.+.++..+++|++|||+|+......++++++++ |+++.+|....... ..+++..++.+++.+.+.... 
T Consensus       218 ~--~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  293 (345)
T cd08260         218 E--VEDVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKR-GRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGM-  293 (345)
T ss_pred             c--chhHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcC-CEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcC-
Confidence            4  135667777776668999999999766688999999997 99999987432222 455666666778888887532 


Q ss_pred             CCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          334 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                        ..+.++.++++++++++.+.+++.+.++++++++|++.+.+++. +|+|++
T Consensus       294 --~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~v~~  344 (345)
T cd08260         294 --PAHRYDAMLALIASGKLDPEPLVGRTISLDEAPDALAAMDDYATAGITVIT  344 (345)
T ss_pred             --CHHHHHHHHHHHHcCCCChhhheeEEecHHHHHHHHHHHHcCCCCceEEec
Confidence              24678899999999988766667899999999999999988765 487764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=100.00  E-value=9.7e-43  Score=331.30  Aligned_cols=336  Identities=27%  Similarity=0.375  Sum_probs=284.6

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC------------CCCCCcccccceeEEEEE
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF------------PAVFPRILGHEAIGVVES   84 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~------------~~~~p~v~G~e~~G~Vv~   84 (388)
                      |||+++..++.++++.++|.|+++++||+||+.++++|++|++.+.|.++            ...+|.++|||++|+|++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~p~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~   80 (350)
T cd08240           1 MKAAAVVEPGKPLEEVEIDTPKPPGTEVLVKVTACGVCHSDLHIWDGGYDLGGGKTMSLDDRGVKLPLVLGHEIVGEVVA   80 (350)
T ss_pred             CeeEEeccCCCCceEEecCCCCCCCCeEEEEEEEEecCchhHHHHcCCCCccccccccccccCCCCCcccccceeEEEEe
Confidence            79999988888799999999999999999999999999999998887643            224567899999999999


Q ss_pred             ecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 016507           85 VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (388)
Q Consensus        85 vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~  164 (388)
                      +|++++.+++||+|+..+...|++|..|.++.++.|....+   .|....                   |+|++|+.++.
T Consensus        81 vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~  138 (350)
T cd08240          81 VGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRA---LGIFQD-------------------GGYAEYVIVPH  138 (350)
T ss_pred             eCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCc---eeeecc-------------------CcceeeEEecH
Confidence            99999999999999999999999999999999999976432   222222                   49999999999


Q ss_pred             CceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       165 ~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      ++++++|+++++.+++.+.+.+.|||+++.....+.++++|||+|+|++|++++|+|+..|+++|+++++++++.+.+++
T Consensus       139 ~~~~~~p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~  218 (350)
T cd08240         139 SRYLVDPGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKA  218 (350)
T ss_pred             HHeeeCCCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence            99999999999999999999999999987666666789999999889999999999999999778999899999999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCc
Q 016507          245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  324 (388)
Q Consensus       245 lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  324 (388)
                      +|++.+++.++   ..+.+.+.+..++++|++||++|....+..++++++++ |+++.+|.....  ...+......++.
T Consensus       219 ~g~~~~~~~~~---~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~--~~~~~~~~~~~~~  292 (350)
T cd08240         219 AGADVVVNGSD---PDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKG-GKLVLVGLFGGE--ATLPLPLLPLRAL  292 (350)
T ss_pred             hCCcEEecCCC---ccHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcC-CeEEEECCCCCC--CcccHHHHhhcCc
Confidence            99999988776   56777777776668999999999766699999999997 999999875432  2233333445788


Q ss_pred             EEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          325 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       325 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      .+.++....   .+++.+++++++++.+.+.  ..+.|+++++++|++.+.+++. +|++++
T Consensus       293 ~i~~~~~~~---~~~~~~~~~ll~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  349 (350)
T cd08240         293 TIQGSYVGS---LEELRELVALAKAGKLKPI--PLTERPLSDVNDALDDLKAGKVVGRAVLK  349 (350)
T ss_pred             EEEEcccCC---HHHHHHHHHHHHcCCCccc--eeeEEcHHHHHHHHHHHHcCCccceEEec
Confidence            888876443   2678899999999976543  5678999999999999887664 488875

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=100.00  E-value=3.3e-43  Score=330.94  Aligned_cols=310  Identities=18%  Similarity=0.199  Sum_probs=258.9

Q ss_pred             eeeeeecCCCCC-----eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCC
Q 016507           17 CRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        17 ~ka~~~~~~~~~-----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      |||+++.+++.|     +++.++|.|.|+++||+||+.++++|++|++.+.|.++. ..+|.++|||++|+|+++|++++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~gi~~~d~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~   80 (324)
T cd08291           1 MKALLLEEYGKPLEVKELSLPEPEVPEPGPGEVLIKVEAAPINPSDLGFLKGQYGSTKALPVPPGFEGSGTVVAAGGGPL   80 (324)
T ss_pred             CeEEEEeecCCCccccEEEecccCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCcCCCcceEEEEEEECCCcc
Confidence            689999988753     788899999999999999999999999999999887643 45689999999999999999999


Q ss_pred             C-CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           91 G-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        91 ~-~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      + |++||+|+..+.                             .+                   |+|++|+.++.+.+++
T Consensus        81 ~~~~vGd~V~~~~~-----------------------------~~-------------------g~~a~~~~v~~~~~~~  112 (324)
T cd08291          81 AQSLIGKRVAFLAG-----------------------------SY-------------------GTYAEYAVADAQQCLP  112 (324)
T ss_pred             ccCCCCCEEEecCC-----------------------------CC-------------------CcchheeeecHHHeEE
Confidence            6 999999974210                             01                   4999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEE-c-cchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-G-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~-G-ag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      +|+++++++++++++.++|||. +...... ++++++|+ | +|++|++++|+|+.+|+ +|+++++++++.++++++|+
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~-~~~~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~  189 (324)
T cd08291         113 LPDGVSFEQGASSFVNPLTALG-MLETARE-EGAKAVVHTAAASALGRMLVRLCKADGI-KVINIVRRKEQVDLLKKIGA  189 (324)
T ss_pred             CCCCCCHHHHhhhcccHHHHHH-HHHhhcc-CCCcEEEEccCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC
Confidence            9999999999988889999985 4455555 55666665 5 59999999999999999 89999999999999999999


Q ss_pred             cEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEE
Q 016507          248 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKIL  326 (388)
Q Consensus       248 ~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i  326 (388)
                      ++++++++   .++.+.+++++.+ ++|++||++|+.. ....+++++++ |+++.+|.........++...++.+++++
T Consensus       190 ~~~i~~~~---~~~~~~v~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~  264 (324)
T cd08291         190 EYVLNSSD---PDFLEDLKELIAKLNATIFFDAVGGGL-TGQILLAMPYG-STLYVYGYLSGKLDEPIDPVDLIFKNKSI  264 (324)
T ss_pred             cEEEECCC---ccHHHHHHHHhCCCCCcEEEECCCcHH-HHHHHHhhCCC-CEEEEEEecCCCCcccCCHHHHhhcCcEE
Confidence            99999887   7788889988887 8999999999887 67889999997 99999997533222235666777889999


Q ss_pred             EEeeecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          327 MGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       327 ~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      .+++...+..   .+++++++++++ +  .++++++++|+|+|+.+|++.+.+++. +|++|.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~i~~~~~l~~~~~a~~~~~~~~~~Gkvv~~  324 (324)
T cd08291         265 EGFWLTTWLQKLGPEVVKKLKKLVK-T--ELKTTFASRYPLALTLEAIAFYSKNMSTGKKLLI  324 (324)
T ss_pred             EEEEHHHhhcccCHHHHHHHHHHHh-C--ccccceeeEEcHHHHHHHHHHHHhCCCCCeEEeC
Confidence            9987655421   345778888887 6  456678999999999999999988654 699873

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=100.00  E-value=2e-42  Score=328.51  Aligned_cols=336  Identities=27%  Similarity=0.418  Sum_probs=283.3

Q ss_pred             eeeeeecCCCCCeEEEEeecCCC-CCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++.++++ +++.+.|+|+| +++||+||+.++++|++|+..+.|.++. .+|.++|||++|+|+++|++++.+++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~ev~V~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (345)
T cd08287           1 MRATVIHGPGD-IRVEEVPDPVIEEPTDAVIRVVATCVCGSDLWPYRGVSPT-RAPAPIGHEFVGVVEEVGSEVTSVKPG   78 (345)
T ss_pred             CceeEEecCCc-eeEEeCCCCCCCCCCeEEEEEeeeeecccchhhhcCCCCC-CCCcccccceEEEEEEeCCCCCccCCC
Confidence            68999998876 99999999996 8999999999999999999988887643 457899999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC--ceEEcCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~lP~~  173 (388)
                      |+|+..+...|+.|.+|..++.++|....+   .|...+|                   +|++|+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~~lP~~  136 (345)
T cd08287          79 DFVIAPFAISDGTCPFCRAGFTTSCVHGGF---WGAFVDG-------------------GQGEYVRVPLADGTLVKVPGS  136 (345)
T ss_pred             CEEEeccccCCCCChhhhCcCcccCCCCCc---ccCCCCC-------------------ceEEEEEcchhhCceEECCCC
Confidence            999886778899999999999999986543   4433444                   99999999975  99999999


Q ss_pred             CCccccc-----cccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc
Q 016507          174 VPPNRAC-----LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (388)
Q Consensus       174 ~~~~~aa-----~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~  248 (388)
                      +++..+.     .+...+.||+.++ ..+.+.++++|+|.|+|++|++++++|+.+|++.++++++++++.++++++|++
T Consensus       137 l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vg~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~ga~  215 (345)
T cd08287         137 PSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVGDGAVGLCAVLAAKRLGAERIIAMSRHEDRQALAREFGAT  215 (345)
T ss_pred             CChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence            9882221     2225678888875 577899999999988899999999999999996689998888899999999999


Q ss_pred             EEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEE
Q 016507          249 EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  327 (388)
Q Consensus       249 ~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  327 (388)
                      +++++++   ..+.+.+.+.+++ ++|+++||+|+...+..++++++++ |+++.+|...  ....++....+.+++.+.
T Consensus       216 ~v~~~~~---~~~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~-g~~v~~g~~~--~~~~~~~~~~~~~~~~~~  289 (345)
T cd08287         216 DIVAERG---EEAVARVRELTGGVGADAVLECVGTQESMEQAIAIARPG-GRVGYVGVPH--GGVELDVRELFFRNVGLA  289 (345)
T ss_pred             eEecCCc---ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccC-CEEEEecccC--CCCccCHHHHHhcceEEE
Confidence            9999887   6788888888777 8999999999877799999999997 9999998654  234566555677899988


Q ss_pred             EeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          328 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      +....   ..+.++++++++.++.+.+.+++++.++++++++|++.+.+.+..|++|++
T Consensus       290 ~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~~~~~  345 (345)
T cd08287         290 GGPAP---VRRYLPELLDDVLAGRINPGRVFDLTLPLDEVAEGYRAMDERRAIKVLLRP  345 (345)
T ss_pred             EecCC---cHHHHHHHHHHHHcCCCCHHHhEEeeecHHHHHHHHHHHhCCCceEEEeCC
Confidence            75322   235789999999999887766678999999999999998887767999863

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.9e-42  Score=331.30  Aligned_cols=359  Identities=30%  Similarity=0.468  Sum_probs=293.1

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCC---CC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG---VV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~---~~   93 (388)
                      |||+++..++.++++.+.|.|.++++||+||+.++++|++|+.+..+.++. .+|.++|||++|+|+++|+++++   |+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~-~~p~~~g~e~~G~v~~vG~~~~~~~~~~   79 (367)
T cd08263           1 MKAAVLKGPNPPLTIEEIPVPRPKEGEILIRVAACGVCHSDLHVLKGELPF-PPPFVLGHEISGEVVEVGPNVENPYGLS   79 (367)
T ss_pred             CeeEEEecCCCCcEEEEeeCCCCCCCeEEEEEEEeeeCcchHHHhcCCCCC-CCCcccccccceEEEEeCCCCCCCCcCC
Confidence            689999998767899999999999999999999999999999988887654 56889999999999999999988   99


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCC-CCCCCCCCCCccccccCCceecc--cccccceeeeEEeecCceEEc
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-ISPWMPRDQTSRFKDLRGETIHH--FVSVSSFSEYTVLDIAHVVKV  170 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~-~~~g~~~~g~~~~~~~~~~~~~~--~~~~g~~a~~~~~~~~~~~~l  170 (388)
                      +||+|+..+..+|+.|..|..+++++|....+- ...|...+|...+.   +....+  ....|+|++|+.++.+.++++
T Consensus        80 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  156 (367)
T cd08263          80 VGDRVVGSFIMPCGKCRYCARGKENLCEDFFAYNRLKGTLYDGTTRLF---RLDGGPVYMYSMGGLAEYAVVPATALAPL  156 (367)
T ss_pred             CCCEEEEcCCCCCCCChHHhCcCcccCcCccccccccccccCCccccc---ccCCCccccccCCcceeEEEechhhEEEC
Confidence            999999988899999999999999999864310 00010111100000   000000  012469999999999999999


Q ss_pred             CCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       171 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      |+++++.+++.+++.+.|||.++.....+.++++|||+|+|++|++++++|+..|+.+|+++++++++.++++++|++.+
T Consensus       157 P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g~~~v  236 (367)
T cd08263         157 PESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELGATHT  236 (367)
T ss_pred             CCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCceE
Confidence            99999999999999999999988777888999999999889999999999999999559999889999999999999999


Q ss_pred             EcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          251 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      ++.++   .++.+.+++.+++ ++|++||++++......++++++++ |+++.+|.........++...++.+++.+.++
T Consensus       237 ~~~~~---~~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~  312 (367)
T cd08263         237 VNAAK---EDAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDG-GRAVVVGLAPGGATAEIPITRLVRRGIKIIGS  312 (367)
T ss_pred             ecCCc---ccHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcC-CEEEEEccCCCCCccccCHHHHhhCCeEEEec
Confidence            99877   6788888888766 8999999999974489999999997 99999986543334456666665778888775


Q ss_pred             eecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          330 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      +.  ....+.+++++++++++.+.+..++++.|+++++.+|++.+.+++. +|+||.
T Consensus       313 ~~--~~~~~~~~~~~~ll~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~  367 (367)
T cd08263         313 YG--ARPRQDLPELVGLAASGKLDPEALVTHKYKLEEINEAYENLRKGLIHGRAIVE  367 (367)
T ss_pred             CC--CCcHHHHHHHHHHHHcCCCCcccceeEEecHHHHHHHHHHHhcCCccceeeeC
Confidence            32  2223578899999999987766667899999999999999988775 488873

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=100.00  E-value=1.2e-42  Score=335.58  Aligned_cols=342  Identities=18%  Similarity=0.211  Sum_probs=280.8

Q ss_pred             CCcceeeeeecC--CCC---CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC----------CCCCCcccccc
Q 016507           13 KPIQCRAAIATA--PGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF----------PAVFPRILGHE   77 (388)
Q Consensus        13 ~~~~~ka~~~~~--~~~---~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p~v~G~e   77 (388)
                      .|.+|||+++..  .+.   .++++++|.|.++++||+||+.+++||++|++...|...          ....+.++|||
T Consensus         9 ~~~~~~a~~~~~~~~g~~~~~~~~~~~~~p~l~~~evlI~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~G~e   88 (393)
T cd08246           9 VPEKMYAFAIRPERYGDPAQAIQLEDVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAARQRRGRDEPYHIGGSD   88 (393)
T ss_pred             CchhhhheeeecccCCCcccceEEeecCCCCCCCCEEEEEEEEEeeccchhhhhcCCCccccccccccCCCCCccccccc
Confidence            577899998853  222   378889999999999999999999999999988776411          01123589999


Q ss_pred             eeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccccccee
Q 016507           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS  157 (388)
Q Consensus        78 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a  157 (388)
                      ++|+|+++|++++.|++||+|+..+...|+.|..|..+..++|....+   +|+..                  ..|+|+
T Consensus        89 ~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~------------------~~g~~a  147 (393)
T cd08246          89 ASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRI---WGYET------------------NYGSFA  147 (393)
T ss_pred             eEEEEEEeCCCCCcCCCCCEEEEeccccccCccccccccccccccccc---ccccC------------------CCCcce
Confidence            999999999999999999999999899999999999999999975433   44321                  124999


Q ss_pred             eeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHh--cCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC
Q 016507          158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       158 ~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      +|+.++..+++++|+++++++++.+.+.+.|||+++...  ++++++++|||+|+ |++|++++++|+.+|+ +++++++
T Consensus       148 ~y~~v~~~~l~~iP~~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~-~vv~~~~  226 (393)
T cd08246         148 QFALVQATQLMPKPKHLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGA-NPVAVVS  226 (393)
T ss_pred             eEEEechHHeEECCCCCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCC-eEEEEeC
Confidence            999999999999999999999999999999999987654  67899999999997 9999999999999999 7888888


Q ss_pred             CchHHHHHHHcCCcEEEcCCCCC-------------------CccHHHHHHhhcCC--CccEEEEccCCHHHHHHHHHHh
Q 016507          235 ISEKFEIGKRFGVTEFVNSKNCG-------------------DKSVSQIIIDMTDG--GADYCFECVGLASLVQEAYACC  293 (388)
Q Consensus       235 ~~~~~~~~~~lga~~v~~~~~~~-------------------~~~~~~~i~~~~~g--~~dvvid~~g~~~~~~~~~~~l  293 (388)
                      ++++.++++++|++++++.++.+                   ...+.+.+.+++++  ++|++|||+|+.. +..+++++
T Consensus       227 s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~g~d~vid~~g~~~-~~~~~~~l  305 (393)
T cd08246         227 SEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARRFGKAIWDILGGREDPDIVFEHPGRAT-FPTSVFVC  305 (393)
T ss_pred             CHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccchHHHHHHHHhCCCCCCeEEEECCchHh-HHHHHHHh
Confidence            99999999999999999875410                   01356777888776  6999999999854 89999999


Q ss_pred             hcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHH
Q 016507          294 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL  373 (388)
Q Consensus       294 ~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~  373 (388)
                      +++ |+++.+|.... ....++...++.++.++.+++...   .+++.+++++++++.+.  +.++++|+++++++|++.
T Consensus       306 ~~~-G~~v~~g~~~~-~~~~~~~~~l~~~~~~i~g~~~~~---~~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~  378 (393)
T cd08246         306 DRG-GMVVICAGTTG-YNHTYDNRYLWMRQKRIQGSHFAN---DREAAEANRLVMKGRID--PCLSKVFSLDETPDAHQL  378 (393)
T ss_pred             ccC-CEEEEEcccCC-CCCCCcHHHHhhheeEEEecccCc---HHHHHHHHHHHHcCCce--eeeeEEEeHHHHHHHHHH
Confidence            997 99999986432 234556666777788888875443   35788999999999665  347799999999999999


Q ss_pred             HhcC-ce-eEEEE
Q 016507          374 LIKG-KC-LRCVI  384 (388)
Q Consensus       374 ~~~~-~~-~kvvv  384 (388)
                      +.++ .. +|+|+
T Consensus       379 ~~~~~~~~gkvvv  391 (393)
T cd08246         379 MHRNQHHVGNMAV  391 (393)
T ss_pred             HHhCccccceEEE
Confidence            9877 44 58776

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=100.00  E-value=3.1e-42  Score=326.66  Aligned_cols=337  Identities=23%  Similarity=0.380  Sum_probs=279.4

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCC---CCCCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      ||++++.++++.+++.+.|.|.|.++||+||+.++++|++|+.++.+..   ....+|.++|||++|+|+++|++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~p~~~~~evlV~v~~~~v~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~   80 (341)
T PRK05396          1 MKALVKLKAEPGLWLTDVPVPEPGPNDVLIKVKKTAICGTDVHIYNWDEWAQKTIPVPMVVGHEFVGEVVEVGSEVTGFK   80 (341)
T ss_pred             CceEEEecCCCceEEEECCCCCCCCCeEEEEEEEEEEcccchHhhcCCCcccccCCCCcccceeeEEEEEEeCCCCCcCC
Confidence            6899999888779999999999999999999999999999998766531   1234678899999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+..+..+|+.|.+|..+..++|....+   .+...+                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~iP~~  138 (341)
T PRK05396         81 VGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKG---VGVNRP-------------------GAFAEYLVIPAFNVWKIPDD  138 (341)
T ss_pred             CCCEEEECCCCCCCCChhhhCcChhhCCCcce---eeecCC-------------------CcceeeEEechHHeEECcCC
Confidence            99999999999999999999999999975432   222233                   49999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++.+++.+ ..+.+++.++..  ...+|++|+|.|+|++|++++++|+.+|+++|+++++++++.++++++|+++++++
T Consensus       139 l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~~~~~~~  215 (341)
T PRK05396        139 IPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGATRAVNV  215 (341)
T ss_pred             CCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCcEEecC
Confidence            999888755 466666655432  34689999999889999999999999999668888888999999999999999988


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      ++   .++.+.+++++++ ++|++|||.|+...+..++++++++ |+++.+|....  ...++...+..+++.+.++...
T Consensus       216 ~~---~~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~l~~~~~~  289 (341)
T PRK05396        216 AK---EDLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHG-GRIAMLGIPPG--DMAIDWNKVIFKGLTIKGIYGR  289 (341)
T ss_pred             cc---ccHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCC--CCcccHHHHhhcceEEEEEEcc
Confidence            77   6788888888876 8999999999887789999999997 99999987542  2344456666778888876522


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEeeC
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  387 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~~  387 (388)
                      .  ..+.+..+++++.++ +.+.+++.+.|+++++++|++.+.++..+|+|++++
T Consensus       290 ~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~a~~~~~~~~~gk~vv~~~  341 (341)
T PRK05396        290 E--MFETWYKMSALLQSG-LDLSPIITHRFPIDDFQKGFEAMRSGQSGKVILDWD  341 (341)
T ss_pred             C--ccchHHHHHHHHHcC-CChhHheEEEEeHHHHHHHHHHHhcCCCceEEEecC
Confidence            2  134566788888888 556566789999999999999988776569999764

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=100.00  E-value=4e-42  Score=329.76  Aligned_cols=347  Identities=24%  Similarity=0.327  Sum_probs=282.6

Q ss_pred             eeeeeecCCCCCeEEEEeecCCC-CCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      ||++++.+++. ++++++|+|++ +++||+|||.++++|++|++.+.|..+ ..+|.++|||++|+|+++|++++.+++|
T Consensus         1 m~~~~~~~~~~-~~~~~~~~p~~~~~~evlv~v~a~~i~~~D~~~~~g~~~-~~~p~~~g~e~~G~V~~vG~~v~~~~~G   78 (375)
T cd08282           1 MKAVVYGGPGN-VAVEDVPDPKIEHPTDAIVRITTTAICGSDLHMYRGRTG-AEPGLVLGHEAMGEVEEVGSAVESLKVG   78 (375)
T ss_pred             CceEEEecCCc-eeEEeCCCCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCC-CCCCceeccccEEEEEEeCCCCCcCCCC
Confidence            68999988874 99999999996 799999999999999999999988765 3568899999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC--ceEEcCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~lP~~  173 (388)
                      |+|+..+..+|+.|..|+.++.++|......  ++....|....          ....|+|++|+.++..  .++++|++
T Consensus        79 d~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~--~~~~~~~~~~~----------~~~~g~~a~y~~v~~~~~~~~~lP~~  146 (375)
T cd08282          79 DRVVVPFNVACGRCRNCKRGLTGVCLTVNPG--RAGGAYGYVDM----------GPYGGGQAEYLRVPYADFNLLKLPDR  146 (375)
T ss_pred             CEEEEeCCCCCCCCHHHHCcCcccCCCCCcc--ccccccccccc----------CCCCCeeeeEEEeecccCcEEECCCC
Confidence            9999999999999999999999999764321  00000010000          0012599999999976  89999999


Q ss_pred             CCcc---ccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          174 VPPN---RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       174 ~~~~---~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      ++++   +++.+.+.++|||+++ ..+++.+|++|||.|+|++|++++|+|++.|+.+|+++++++++.++++++|+. .
T Consensus       147 ~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g~g~vg~~~~~~a~~~G~~~vi~~~~~~~~~~~~~~~g~~-~  224 (375)
T cd08282         147 DGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFGAGPVGLMAAYSAILRGASRVYVVDHVPERLDLAESIGAI-P  224 (375)
T ss_pred             CChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCe-E
Confidence            9998   5678888999999987 778899999999988899999999999999976788899999999999999984 5


Q ss_pred             EcCCCCCCccHHHHHHhhcCCCccEEEEccCCHH-----------HHHHHHHHhhcCCceEEEEccCCCC----------
Q 016507          251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS-----------LVQEAYACCRKGWGKTIVLGVDQPG----------  309 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~-----------~~~~~~~~l~~~~G~~v~~g~~~~~----------  309 (388)
                      +++++   .++.+.+.+++++++|++|||+|+..           .+..++++++++ |+++.+|.....          
T Consensus       225 v~~~~---~~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~g~~~~~~~~~~~~~~~  300 (375)
T cd08282         225 IDFSD---GDPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPG-GGIGIVGVYVAEDPGAGDAAAK  300 (375)
T ss_pred             eccCc---ccHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcC-cEEEEEeccCCccccccccccc
Confidence            67665   66778888776668999999998762           478999999997 999988764311          


Q ss_pred             -CccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          310 -SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       310 -~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                       ....++...++.++..+.+...   ...+.++++++++.++.+.+..+++++|+++++++|++.+.++...|+|+++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~kvvv~~  375 (375)
T cd08282         301 QGELSFDFGLLWAKGLSFGTGQA---PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRLETKVVIKP  375 (375)
T ss_pred             CccccccHHHHHhcCcEEEEecC---CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCCceEEEeCC
Confidence             1234566667777777766532   2246788999999999887766688999999999999999887755998863

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=100.00  E-value=7.8e-42  Score=324.28  Aligned_cols=339  Identities=26%  Similarity=0.400  Sum_probs=282.4

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCC-CCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++..++. ++++++|+|+|. ++||+||+.++++|++|+....|.++ ..+|.++|+|++|+|+++|++++.+++|
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~-~~~~~~~g~e~~G~V~~vG~~v~~~~~G   78 (344)
T cd08284           1 MKAVVFKGPGD-VRVEEVPIPQIQDPTDAIVKVTAAAICGSDLHIYRGHIP-STPGFVLGHEFVGEVVEVGPEVRTLKVG   78 (344)
T ss_pred             CeeEEEecCCC-ceEEeccCCCCCCCCeEEEEEEEeeccccchhhhcCCCC-CCCCcccccceEEEEEeeCCCccccCCC
Confidence            68999988764 999999999985 99999999999999999998888654 3457889999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC--ceEEcCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~lP~~  173 (388)
                      |+|+..+..+|+.|.+|++++.+.|+....   +|..  +             .....|+|++|+.++.+  .++++|++
T Consensus        79 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~-------------~~~~~g~~~~~~~v~~~~~~~~~~p~~  140 (344)
T cd08284          79 DRVVSPFTIACGECFYCRRGQSGRCAKGGL---FGYA--G-------------SPNLDGAQAEYVRVPFADGTLLKLPDG  140 (344)
T ss_pred             CEEEEcccCCCCCChHHhCcCcccCCCCcc---cccc--c-------------cCCCCCceeEEEEcccccCceEECCCC
Confidence            999988889999999999999999975421   2110  0             00113599999999864  99999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++++++.+++++.|||+++. ...+.++++|||+|+|++|++++++|+.+|+.+|+++++++++.++++++|+. +++.
T Consensus       141 l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~-~~~~  218 (344)
T cd08284         141 LSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAE-PINF  218 (344)
T ss_pred             CCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCe-EEec
Confidence            999999999999999999874 47889999999998899999999999999975799998888999999999986 4666


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      +.   .++.+.+.+++++ ++|++|||+++...+..++++++++ |+++.+|.... ..........+.+++.+.+..  
T Consensus       219 ~~---~~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~--  291 (344)
T cd08284         219 ED---AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPG-GVISSVGVHTA-EEFPFPGLDAYNKNLTLRFGR--  291 (344)
T ss_pred             CC---cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccC-CEEEEECcCCC-CCccccHHHHhhcCcEEEEec--
Confidence            55   5677888888876 8999999999876689999999997 99999997542 233445556677788877542  


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEe
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  385 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~  385 (388)
                       ....+.++.+++++.++.+.+.+++.+.|+++++++|++.+.++..+|+|++
T Consensus       292 -~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~Vi~  343 (344)
T cd08284         292 -CPVRSLFPELLPLLESGRLDLEFLIDHRMPLEEAPEAYRLFDKRKVLKVVLD  343 (344)
T ss_pred             -CCcchhHHHHHHHHHcCCCChHHhEeeeecHHHHHHHHHHHhcCCceEEEec
Confidence             2235678999999999988766667899999999999998887655788875

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1.8e-41  Score=321.00  Aligned_cols=334  Identities=29%  Similarity=0.521  Sum_probs=283.9

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++..++. +++.+++.|+++++||+|||.++++|+.|+....+.++...+|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~~~~~~v~v~v~~~~l~~~d~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (337)
T cd08261           1 MKALVCEKPGR-LEVVDIPEPVPGAGEVLVRVKRVGICGSDLHIYHGRNPFASYPRILGHELSGEVVEVGEGVAGLKVGD   79 (337)
T ss_pred             CeEEEEeCCCc-eEEEECCCCCCCCCeEEEEEEEEeEcccChHHHcCCCCcCCCCcccccccEEEEEEeCCCCCCCCCCC
Confidence            68999998875 89999999999999999999999999999999888765555688999999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      +|+..+...|+.|..|..++.+.|...+.   .++...                   |+|++|+.++.+ ++++|+++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~-~~~~p~~~~~  136 (337)
T cd08261          80 RVVVDPYISCGECYACRKGRPNCCENLQV---LGVHRD-------------------GGFAEYIVVPAD-ALLVPEGLSL  136 (337)
T ss_pred             EEEECCCCCCCCChhhhCcCcccCCCCCe---eeecCC-------------------CcceeEEEechh-eEECCCCCCH
Confidence            99988888999999999999999953322   222222                   499999999999 9999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      ++++++ ..+.+++.++ ...++.++++|||+|+|.+|.+++++|+.+|+ +|+++.+++++.++++++|+++++++++ 
T Consensus       137 ~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~-~v~~~~~s~~~~~~~~~~g~~~v~~~~~-  212 (337)
T cd08261         137 DQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVGAGPIGLGVIQVAKARGA-RVIVVDIDDERLEFARELGADDTINVGD-  212 (337)
T ss_pred             HHhhhh-chHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEECCCHHHHHHHHHhCCCEEecCcc-
Confidence            999887 4778888865 77889999999999889999999999999999 8999988999999999999999999887 


Q ss_pred             CCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC
Q 016507          257 GDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  335 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  335 (388)
                        .++.+.+.+++++ ++|++|||+|+...+..++++++++ |+++.+|...  ....++...+..+++.+.+..   ..
T Consensus       213 --~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~i~~g~~~--~~~~~~~~~~~~~~~~~~~~~---~~  284 (337)
T cd08261         213 --EDVAARLRELTDGEGADVVIDATGNPASMEEAVELVAHG-GRVVLVGLSK--GPVTFPDPEFHKKELTILGSR---NA  284 (337)
T ss_pred             --cCHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEcCCC--CCCccCHHHHHhCCCEEEEec---cC
Confidence              6788888888777 8999999998876689999999997 9999998653  334455556666788887763   22


Q ss_pred             ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc-e-eEEEEee
Q 016507          336 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-C-LRCVIWM  386 (388)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~-~kvvv~~  386 (388)
                      ..+.++++++++.++.+.+.+.+...++++++++|++.+.+++ . +|+|+++
T Consensus       285 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~  337 (337)
T cd08261         285 TREDFPDVIDLLESGKVDPEALITHRFPFEDVPEAFDLWEAPPGGVIKVLIEF  337 (337)
T ss_pred             ChhhHHHHHHHHHcCCCChhhheEEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            3457889999999998776334778999999999999998763 4 5999874

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=100.00  E-value=5.8e-42  Score=323.84  Aligned_cols=331  Identities=27%  Similarity=0.382  Sum_probs=279.3

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++.+++++++++++|.|.+.++|++||+.++++|++|++...|..+..++|.++|||++|+|+++|++++.+++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~G~   80 (334)
T PRK13771          1 MKAVILPGFKQGYRIEEVPDPKPGKDEVVIKVNYAGLCYRDLLQLQGFYPRMKYPVILGHEVVGTVEEVGENVKGFKPGD   80 (334)
T ss_pred             CeeEEEcCCCCCcEEEeCCCCCCCCCeEEEEEEEEeechhhHHHhcCCCCCCCCCeeccccceEEEEEeCCCCccCCCCC
Confidence            68999999998899999999999999999999999999999998888766556688999999999999999998999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      +|++.+..+|+.|.+|..+..+.|.....   .|...+|                   +|++|+.++.+.++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~~~  138 (334)
T PRK13771         81 RVASLLYAPDGTCEYCRSGEEAYCKNRLG---YGEELDG-------------------FFAEYAKVKVTSLVKVPPNVSD  138 (334)
T ss_pred             EEEECCCCCCcCChhhcCCCcccCccccc---cccccCc-------------------eeeeeeecchhceEECCCCCCH
Confidence            99998888999999999999999987543   3433344                   9999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      .+++.+++.+.+||+++... .+.++++|||+|+ |.+|++++++|+.+|+ +|+++++++++.+.++++ ++++++.+ 
T Consensus       139 ~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~-~vi~~~~~~~~~~~~~~~-~~~~~~~~-  214 (334)
T PRK13771        139 EGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGA-KVIAVTSSESKAKIVSKY-ADYVIVGS-  214 (334)
T ss_pred             HHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHH-HHHhcCch-
Confidence            99999999999999987554 8999999999997 9999999999999999 899999999999999888 77776543 


Q ss_pred             CCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC
Q 016507          256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  335 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  335 (388)
                          .+.+.++++  +++|++|||+|+.. ...++++++++ |+++.+|.........+.....+.+++++.+...   .
T Consensus       215 ----~~~~~v~~~--~~~d~~ld~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  283 (334)
T PRK13771        215 ----KFSEEVKKI--GGADIVIETVGTPT-LEESLRSLNMG-GKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHIS---A  283 (334)
T ss_pred             ----hHHHHHHhc--CCCcEEEEcCChHH-HHHHHHHHhcC-CEEEEEeccCCCCCcccCHHHHHhcccEEEEecC---C
Confidence                245556554  37999999999875 88999999997 9999999753322222344444567888887742   2


Q ss_pred             ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          336 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..++++++++++.++.+.  +++.+.|+++++++|++.+.++.. +|+++++
T Consensus       284 ~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  333 (334)
T PRK13771        284 TKRDVEEALKLVAEGKIK--PVIGAEVSLSEIDKALEELKDKSRIGKILVKP  333 (334)
T ss_pred             CHHHHHHHHHHHHcCCCc--ceEeeeEcHHHHHHHHHHHHcCCCcceEEEec
Confidence            346789999999999664  447799999999999999987654 5988865

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=100.00  E-value=1.4e-41  Score=322.44  Aligned_cols=337  Identities=28%  Similarity=0.431  Sum_probs=286.0

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++.+++. +.+++.+.|++.+++|+||+.++++|+.|+.++.|.++...+|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~~~~~~~~~~-~~~~~~~~~~l~~~~v~i~v~~~~l~~~d~~~~~g~~~~~~~~~~~g~~~~G~V~~~G~~v~~~~~Gd   79 (343)
T cd08235           1 MKAAVLHGPND-VRLEEVPVPEPGPGEVLVKVRACGICGTDVKKIRGGHTDLKPPRILGHEIAGEIVEVGDGVTGFKVGD   79 (343)
T ss_pred             CeEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEeeeccccHHHHcCCCccCCCCcccccceEEEEEeeCCCCCCCCCCC
Confidence            68999988875 99999999999999999999999999999998888764344577899999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCc-----eEEcC
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-----VVKVD  171 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~-----~~~lP  171 (388)
                      +|+..++..|+.|..|..++.++|.....   +|....                   |+|++|+.++.++     ++++|
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~v~v~~~~~~~~~~~~lP  137 (343)
T cd08235          80 RVFVAPHVPCGECHYCLRGNENMCPNYKK---FGNLYD-------------------GGFAEYVRVPAWAVKRGGVLKLP  137 (343)
T ss_pred             EEEEccCCCCCCChHHHCcCcccCCCcce---eccCCC-------------------CcceeeEEecccccccccEEECC
Confidence            99999999999999999999999976553   333333                   4999999999988     99999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      +++++.+|+.+ +.+.+||+++. ..++.++++|||+|+|.+|++++++|+..|++.|+++.+++++.+.++++|+++++
T Consensus       138 ~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~~~~~~g~~~~~  215 (343)
T cd08235         138 DNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLEFAKKLGADYTI  215 (343)
T ss_pred             CCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEe
Confidence            99999999876 68899999774 45899999999998899999999999999994399998899999999899999999


Q ss_pred             cCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          252 NSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      ++++   .++.+.+++.+.+ ++|++|||+++...+..++++++++ |+++.+|.........++...+..+++.+.+..
T Consensus       216 ~~~~---~~~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  291 (343)
T cd08235         216 DAAE---EDLVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKG-GRILFFGGLPKGSTVNIDPNLIHYREITITGSY  291 (343)
T ss_pred             cCCc---cCHHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEeccCCCCCcccCHHHHhhCceEEEEEe
Confidence            9887   6788888888777 8999999999876689999999997 999999865433334555566667788887765


Q ss_pred             ecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEe
Q 016507          331 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  385 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~  385 (388)
                      ..   ..+.++.+++++.++.+.+.+.+...|+++++.+|++.+.+++.+|+|++
T Consensus       292 ~~---~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi~  343 (343)
T cd08235         292 AA---SPEDYKEALELIASGKIDVKDLITHRFPLEDIEEAFELAADGKSLKIVIT  343 (343)
T ss_pred             cC---ChhhHHHHHHHHHcCCCChHHheeeEeeHHHHHHHHHHHhCCCcEEEEeC
Confidence            32   23578889999999987654557789999999999999988774488873

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=9.6e-42  Score=328.04  Aligned_cols=340  Identities=22%  Similarity=0.355  Sum_probs=278.3

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCC------C-CCCCCcccccceeEEEEEecC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD------F-PAVFPRILGHEAIGVVESVGE   87 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~------~-~~~~p~v~G~e~~G~Vv~vG~   87 (388)
                      .++.+.++..+  .++++++|.|++++++|+||+.++++|++|++.+.+..      + ...+|.++|||++|+|+++|+
T Consensus        27 ~~~~~~~~~~~--~~~~~~~~~p~~~~~ev~V~v~a~gi~~~D~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~  104 (384)
T cd08265          27 TNLGSKVWRYP--ELRVEDVPVPNLKPDEILIRVKACGICGSDIHLYETDKDGYILYPGLTEFPVVIGHEFSGVVEKTGK  104 (384)
T ss_pred             ccceeEEEeCC--CEEEEECCCCCCCCCEEEEEEEEEEEcHhHHHHHcCCCCcccccCcccCCCcccccceEEEEEEECC
Confidence            34556666654  39999999999999999999999999999998876321      1 134678999999999999999


Q ss_pred             CCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCce
Q 016507           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (388)
Q Consensus        88 ~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~  167 (388)
                      +++.|++||+|+..+..+|+.|..|..++.++|.....   .|+..+|                   +|++|+.++.+.+
T Consensus       105 ~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~v~v~~~~~  162 (384)
T cd08265         105 NVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKE---LGFSADG-------------------AFAEYIAVNARYA  162 (384)
T ss_pred             CCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcce---eeecCCC-------------------cceeeEEechHHe
Confidence            99999999999999999999999999999999986553   4443344                   9999999999999


Q ss_pred             EEcCCCC-------CccccccccchhhhhHHHHHHh-cCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          168 VKVDPTV-------PPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       168 ~~lP~~~-------~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      +++|+++       +.. ++++..++.+||+++... .++++|++|||+|+|++|++++++|+.+|+.+|+++++++++.
T Consensus       163 ~~lP~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g~g~vG~~ai~lA~~~G~~~vi~~~~~~~~~  241 (384)
T cd08265         163 WEINELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYGAGPIGLAAIALAKAAGASKVIAFEISEERR  241 (384)
T ss_pred             EECCccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHH
Confidence            9999864       344 556666889999987665 6899999999998899999999999999987799999888999


Q ss_pred             HHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCH-HHHHHHHHHhhcCCceEEEEccCCCCCccccCHH
Q 016507          240 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF  317 (388)
Q Consensus       240 ~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~  317 (388)
                      ++++++|+++++++++....++.+.+.+++.+ ++|+|+|++|.. ..+..++++++++ |+++.+|....  ...+++.
T Consensus       242 ~~~~~~g~~~~v~~~~~~~~~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~  318 (384)
T cd08265         242 NLAKEMGADYVFNPTKMRDCLSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAIN-GKIVYIGRAAT--TVPLHLE  318 (384)
T ss_pred             HHHHHcCCCEEEcccccccccHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcC-CEEEEECCCCC--CCcccHH
Confidence            99999999999987751113678888888887 899999999973 4578999999997 99999986432  3445555


Q ss_pred             HHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEE
Q 016507          318 EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  384 (388)
Q Consensus       318 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv  384 (388)
                      .+..+..++.+.+...  ....++++++++.++.+.+..++++.|+++++++|++.+.++..+|+|+
T Consensus       319 ~~~~~~~~l~~~~~~~--~~~~~~~~~~ll~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~kvvv  383 (384)
T cd08265         319 VLQVRRAQIVGAQGHS--GHGIFPSVIKLMASGKIDMTKIITARFPLEGIMEAIKAASERTDGKITI  383 (384)
T ss_pred             HHhhCceEEEEeeccC--CcchHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEe
Confidence            5666677888775322  2346899999999998877666789999999999999977766568775

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1e-41  Score=320.10  Aligned_cols=317  Identities=23%  Similarity=0.369  Sum_probs=269.1

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++.+++. ++++++|.|+++++||+||+.++++|++|+....|..+   +|.++|||++|+|+++|++   +++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~p~~~~~~vlV~v~a~~i~~~d~~~~~g~~~---~~~~~G~e~~G~Vv~~G~~---~~~G~   73 (319)
T cd08242           1 MKALVLDGGLD-LRVEDLPKPEPPPGEALVRVLLAGICNTDLEIYKGYYP---FPGVPGHEFVGIVEEGPEA---ELVGK   73 (319)
T ss_pred             CeeEEEeCCCc-EEEEECCCCCCCCCeEEEEEEEEEEccccHHHHcCCCC---CCCccCceEEEEEEEeCCC---CCCCC
Confidence            68999998764 99999999999999999999999999999998888653   5788999999999999997   78999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      +|...+..+|+.|.+|..+..+.|.....   .+.. .+                   |+|++|+.++.++++++|++++
T Consensus        74 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~  131 (319)
T cd08242          74 RVVGEINIACGRCEYCRRGLYTHCPNRTV---LGIVDRD-------------------GAFAEYLTLPLENLHVVPDLVP  131 (319)
T ss_pred             eEEECCCcCCCCChhhhCcCcccCCCCcc---cCccCCC-------------------CceEEEEEechHHeEECcCCCC
Confidence            99999999999999999999999886543   2321 23                   4999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      .++++.+ ..+.+++. +.+..++.++++|||+|+|.+|++++|+|+.+|+ +|++++.++++.++++++|++.+++.++
T Consensus       132 ~~~aa~~-~~~~~~~~-~~~~~~~~~g~~vlV~g~g~vg~~~~q~a~~~G~-~vi~~~~~~~~~~~~~~~g~~~~~~~~~  208 (319)
T cd08242         132 DEQAVFA-EPLAAALE-ILEQVPITPGDKVAVLGDGKLGLLIAQVLALTGP-DVVLVGRHSEKLALARRLGVETVLPDEA  208 (319)
T ss_pred             HHHhhhh-hHHHHHHH-HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEeCccc
Confidence            9888864 35556665 5577889999999999889999999999999999 7999999999999999999998887654


Q ss_pred             CCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          256 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                         .         +.+ ++|++|||+|+...+..++++++++ |+++..+...  ....++...+..++.++.+.+..  
T Consensus       209 ---~---------~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~--  271 (319)
T cd08242         209 ---E---------SEGGGFDVVVEATGSPSGLELALRLVRPR-GTVVLKSTYA--GPASFDLTKAVVNEITLVGSRCG--  271 (319)
T ss_pred             ---c---------ccCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccC--CCCccCHHHheecceEEEEEecc--
Confidence               1         233 8999999999876689999999997 9999877533  33456666667778888887532  


Q ss_pred             CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          335 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                          .+++++++++++++++.+++++.|+++++++||+.+.++..+|+||++
T Consensus       272 ----~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~k~vi~~  319 (319)
T cd08242         272 ----PFAPALRLLRKGLVDVDPLITAVYPLEEALEAFERAAEPGALKVLLRP  319 (319)
T ss_pred             ----cHHHHHHHHHcCCCChhhceEEEEeHHHHHHHHHHHhcCCceEEEeCC
Confidence                378899999999887667788999999999999999877767999863

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=100.00  E-value=1.1e-41  Score=329.14  Aligned_cols=345  Identities=21%  Similarity=0.235  Sum_probs=281.1

Q ss_pred             CCcceeeeeecC--CCC---CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC----------CCCCC-ccccc
Q 016507           13 KPIQCRAAIATA--PGE---PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF----------PAVFP-RILGH   76 (388)
Q Consensus        13 ~~~~~ka~~~~~--~~~---~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~----------~~~~p-~v~G~   76 (388)
                      .|.+|||+++..  +++   .+++.++|.|.|.+++|+||+.++++|++|++...+...          ....| .++||
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~p~l~~~evlV~v~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~G~   83 (398)
T TIGR01751         4 VPETMYAFAIREERDGDPRQAIQLEVVPVPELGPGEVLVAVMAAGVNYNNVWAALGEPVSTFAFLRKYGRDDLPFHIIGS   83 (398)
T ss_pred             cchhhhheEEecccCCCcccceEEeecCCCCCCCCeEEEEEEEEecCchhhhhhcCCccchhhhhcccCCCCCCceeccc
Confidence            467799999954  443   388899999999999999999999999999876655321          11223 37999


Q ss_pred             ceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccce
Q 016507           77 EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF  156 (388)
Q Consensus        77 e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  156 (388)
                      |++|+|+++|++++.|++||+|+..+...|+.|.+|+.++.++|.....   .|...                  ..|+|
T Consensus        84 e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~------------------~~g~~  142 (398)
T TIGR01751        84 DASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRI---WGYET------------------NFGSF  142 (398)
T ss_pred             ceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCcccccccccc---ccccC------------------CCccc
Confidence            9999999999999999999999999999999999999999999965332   22211                  12499


Q ss_pred             eeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHH--hcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEc
Q 016507          157 SEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (388)
Q Consensus       157 a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~  233 (388)
                      ++|+.++.++++++|+++++++++.+.+.+.|||.++..  ..++.++++|||+|+ |++|++++++|+.+|+ ++++++
T Consensus       143 ae~~~v~~~~~~~vP~~l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~-~vi~~~  221 (398)
T TIGR01751       143 AEFALVKDYQLMPKPKHLTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGG-NPVAVV  221 (398)
T ss_pred             eEEEEechHHeEECCCCCCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-eEEEEc
Confidence            999999999999999999999999999999999998654  467899999999997 9999999999999999 788888


Q ss_pred             CCchHHHHHHHcCCcEEEcCCCCC-------------------CccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHh
Q 016507          234 VISEKFEIGKRFGVTEFVNSKNCG-------------------DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACC  293 (388)
Q Consensus       234 ~~~~~~~~~~~lga~~v~~~~~~~-------------------~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l  293 (388)
                      +++++.++++++|++.++|+++.+                   ...+.+.+.+++++ ++|++|||+|... +..+++++
T Consensus       222 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~vld~~g~~~-~~~~~~~l  300 (398)
T TIGR01751       222 SSPEKAEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSFKRFGKRIRELTGGEDPDIVFEHPGRAT-FPTSVFVC  300 (398)
T ss_pred             CCHHHHHHHHHcCCCEEecCCCcchhhccccccccccchhhhcchhHHHHHHHHcCCCCceEEEECCcHHH-HHHHHHhh
Confidence            888999999999999999875410                   01255667777776 8999999999755 88999999


Q ss_pred             hcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHH
Q 016507          294 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL  373 (388)
Q Consensus       294 ~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~  373 (388)
                      +++ |+++.+|... .....++...++.++..+.++....+   .++++++++++++.+.  +.+++++++++++++++.
T Consensus       301 ~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~--~~~~~~~~l~~~~~a~~~  373 (398)
T TIGR01751       301 RRG-GMVVICGGTT-GYNHDYDNRYLWMRQKRIQGSHFANL---REAWEANRLVAKGRID--PTLSKVYPLEEIGQAHQD  373 (398)
T ss_pred             ccC-CEEEEEcccc-CCCCCcCHHHHhhcccEEEccccCcH---HHHHHHHHHHHCCCcc--cceeeEEcHHHHHHHHHH
Confidence            997 9999999753 22345566666677788887754432   4578899999999665  347899999999999999


Q ss_pred             HhcCce-eEEEEeeC
Q 016507          374 LIKGKC-LRCVIWMG  387 (388)
Q Consensus       374 ~~~~~~-~kvvv~~~  387 (388)
                      +.++.. +|+|+++.
T Consensus       374 ~~~~~~~gkvvv~~~  388 (398)
T TIGR01751       374 VHRNHHQGNVAVLVL  388 (398)
T ss_pred             HHcCCCCceEEEEeC
Confidence            987765 49998764

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>PLN02702 L-idonate 5-dehydrogenase

Probab=100.00  E-value=3.3e-41  Score=322.39  Aligned_cols=339  Identities=27%  Similarity=0.446  Sum_probs=273.3

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC---CCCCCcccccceeEEEEEecCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      .+|+++++.+++. +++++.+.|++.++||+||+.++++|++|++.+.+...   ...+|.++|||++|+|+++|++++.
T Consensus        16 ~~~~~~~~~~~~~-l~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~p~~~G~e~~G~V~~vG~~v~~   94 (364)
T PLN02702         16 EENMAAWLVGVNT-LKIQPFKLPPLGPHDVRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEVGSEVKH   94 (364)
T ss_pred             cccceEEEecCCc-eEEEeccCCCCCCCeEEEEEEEEEEchhhhHHHcCCCCccccCCCCcccccceeEEEEEECCCCCC
Confidence            3455666666655 88889999999999999999999999999998876321   1235778999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      |++||+|+..+..+|+.|..|+.|.++.|+....   ++..                  ...|+|++|+.++.+.++++|
T Consensus        95 ~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~---~~~~------------------~~~g~~~~y~~v~~~~~~~~P  153 (364)
T PLN02702         95 LVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKF---FATP------------------PVHGSLANQVVHPADLCFKLP  153 (364)
T ss_pred             CCCCCEEEEcCCCCCCCCcchhCcCcccCCCccc---cCCC------------------CCCCcccceEEcchHHeEECC
Confidence            9999999999999999999999999999976332   2211                  112499999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      +++++.+++... .+.+++.++ ...++.++++|||+|+|++|++++++|+.+|+..|+++++++++.++++++|+++++
T Consensus       154 ~~l~~~~aa~~~-~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~  231 (364)
T PLN02702        154 ENVSLEEGAMCE-PLSVGVHAC-RRANIGPETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSVAKQLGADEIV  231 (364)
T ss_pred             CCCCHHHHhhhh-HHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEE
Confidence            999999887633 455577765 778899999999999899999999999999996788888889999999999999887


Q ss_pred             cCCCCCCccHHHHHHhh---cCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEE
Q 016507          252 NSKNCGDKSVSQIIIDM---TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  328 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~---~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  328 (388)
                      +... ...++.+.+.++   +++++|++|||+|+...+..++++++++ |+++.+|....  ...++...+..+++++.+
T Consensus       232 ~~~~-~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~  307 (364)
T PLN02702        232 LVST-NIEDVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAG-GKVCLVGMGHN--EMTVPLTPAAAREVDVVG  307 (364)
T ss_pred             ecCc-ccccHHHHHHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCCC--CCcccHHHHHhCccEEEE
Confidence            6432 014566666554   2338999999999766699999999997 99999996432  234556667778899988


Q ss_pred             eeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEec--chHHHHHHHHhcCce-eEEEEe
Q 016507          329 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF--EEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l--~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      ++..    ...++.++++++++.+.+.++++++|++  +++++|++.+.+++. +|+||.
T Consensus       308 ~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~~kvv~~  363 (364)
T PLN02702        308 VFRY----RNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFN  363 (364)
T ss_pred             eccC----hHHHHHHHHHHHcCCCCchHheEEEeccChHHHHHHHHHHhcCCCceEEEEe
Confidence            7532    2468889999999988766667888666  799999999887654 599885

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=100.00  E-value=4.4e-41  Score=319.05  Aligned_cols=332  Identities=30%  Similarity=0.492  Sum_probs=276.1

Q ss_pred             eeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCC-C--CCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           19 AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-F--PAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        19 a~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~--~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |++++++.. +++++.|.|.+.++||+|||.++++|+.|++.+.+.. .  ...+|.++|+|++|+|+++|+++++|++|
T Consensus         1 ~~~~~~~~~-~~~~~~~~~~l~~~~vlV~v~~~~l~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~G   79 (343)
T cd05285           1 AAVLHGPGD-LRLEERPIPEPGPGEVLVRVRAVGICGSDVHYYKHGRIGDFVVKEPMVLGHESAGTVVAVGSGVTHLKVG   79 (343)
T ss_pred             CceEecCCc-eeEEECCCCCCCCCeEEEEEEEeeEccccHHHHccCCCcccCCCCCcccCcceeEEEEeeCCCCCCCCCC
Confidence            467778865 9999999999999999999999999999988764321 1  12357789999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |+|+..+..+|+.|.+|+.+.+++|.+..+.  .+....                   |+|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------------------g~~~~~~~v~~~~~~~lP~~~~  138 (343)
T cd05285          80 DRVAIEPGVPCRTCEFCKSGRYNLCPDMRFA--ATPPVD-------------------GTLCRYVNHPADFCHKLPDNVS  138 (343)
T ss_pred             CEEEEccccCCCCChhHhCcCcccCcCcccc--ccccCC-------------------CceeeeEEecHHHcEECcCCCC
Confidence            9999989999999999999999999764321  001122                   4999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      +++|+.+ ..+.+|++++ +.+.++++++|||+|+|.+|++++++|+.+|++.|+++.+++++.++++++|++++++.++
T Consensus       139 ~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~  216 (343)
T cd05285         139 LEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKELGATHTVNVRT  216 (343)
T ss_pred             HHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCcEEecccc
Confidence            9999877 4788999875 7889999999999988999999999999999944999988999999999999999998876


Q ss_pred             CCCcc---HHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          256 CGDKS---VSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       256 ~~~~~---~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                         ..   +.+.+.+.+.+ ++|++|||+|+...+..++++++++ |+++.+|....  ...+++..+..+++.+.++..
T Consensus       217 ---~~~~~~~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~  290 (343)
T cd05285         217 ---EDTPESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPG-GTVVLVGMGKP--EVTLPLSAASLREIDIRGVFR  290 (343)
T ss_pred             ---ccchhHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEccCCC--CCccCHHHHhhCCcEEEEecc
Confidence               44   37778887777 8999999999875689999999997 99999986432  244555566667888877642


Q ss_pred             cCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc--eeEEEE
Q 016507          332 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVI  384 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~--~~kvvv  384 (388)
                      .    .+.++++++++.++.+.+.+++.++|+++++.+|++.+.+++  .+|++|
T Consensus       291 ~----~~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~  341 (343)
T cd05285         291 Y----ANTYPTAIELLASGKVDVKPLITHRFPLEDAVEAFETAAKGKKGVIKVVI  341 (343)
T ss_pred             C----hHHHHHHHHHHHcCCCCchHhEEEEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence            2    257889999999997765556778999999999999998875  369987

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.2e-41  Score=320.23  Aligned_cols=335  Identities=22%  Similarity=0.359  Sum_probs=278.5

Q ss_pred             eeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCCE
Q 016507           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (388)
Q Consensus        18 ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~   97 (388)
                      |+++.+..+..+++++++.|++.++||+||+.++++|++|++.+.|......+|.++|||++|+|+++|++++.|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~p~~~~~evlirv~a~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~   80 (337)
T cd05283           1 KGYAARDASGKLEPFTFERRPLGPDDVDIKITYCGVCHSDLHTLRNEWGPTKYPLVPGHEIVGIVVAVGSKVTKFKVGDR   80 (337)
T ss_pred             CceEEecCCCCceEEeccCCCCCCCeEEEEEEEecccchHHHHhcCCcCCCCCCcccCcceeeEEEEECCCCcccCCCCE
Confidence            56777777766999999999999999999999999999999999887655567899999999999999999999999999


Q ss_pred             Ee-ecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           98 VI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        98 V~-~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      |+ ......|++|.+|+++..++|...... +.|....+              ....|+|++|+.++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------------~~~~g~~~~~~~v~~~~~~~lp~~~~~  145 (337)
T cd05283          81 VGVGCQVDSCGTCEQCKSGEEQYCPKGVVT-YNGKYPDG--------------TITQGGYADHIVVDERFVFKIPEGLDS  145 (337)
T ss_pred             EEEecCCCCCCCCccccCCchhcCcchhhc-ccccccCC--------------CcCCCcceeEEEechhheEECCCCCCH
Confidence            97 445568999999999999999875432 11111111              122359999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      ++++.+.+.+.|||.++ +...+.++++|+|.|+|.+|++++++|+.+|+ +|+++++++++.++++++|++.+++.++ 
T Consensus       146 ~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~vi~~~~-  222 (337)
T cd05283         146 AAAAPLLCAGITVYSPL-KRNGVGPGKRVGVVGIGGLGHLAVKFAKALGA-EVTAFSRSPSKKEDALKLGADEFIATKD-  222 (337)
T ss_pred             HHhhhhhhHHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHcCCcEEecCcc-
Confidence            99999999999999976 44568999999998889999999999999999 8999999999999999999999998765 


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCc
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  336 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  336 (388)
                        ..+.+   . ..+++|++|||++....+..++++++++ |+++.+|....  ...+++..++.+++.+.++....   
T Consensus       223 --~~~~~---~-~~~~~d~v~~~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~~---  290 (337)
T cd05283         223 --PEAMK---K-AAGSLDLIIDTVSASHDLDPYLSLLKPG-GTLVLVGAPEE--PLPVPPFPLIFGRKSVAGSLIGG---  290 (337)
T ss_pred             --hhhhh---h-ccCCceEEEECCCCcchHHHHHHHhcCC-CEEEEEeccCC--CCccCHHHHhcCceEEEEecccC---
Confidence              33322   1 2348999999999875588999999997 99999997532  23566666677899999987543   


Q ss_pred             cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          337 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      .++++.+++++.++++.+  .+ +.|+++++++||+.+.+++. +|+|++
T Consensus       291 ~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~~k~v~~  337 (337)
T cd05283         291 RKETQEMLDFAAEHGIKP--WV-EVIPMDGINEALERLEKGDVRYRFVLD  337 (337)
T ss_pred             HHHHHHHHHHHHhCCCcc--ce-EEEEHHHHHHHHHHHHcCCCcceEeeC
Confidence            367899999999997653  34 78999999999999998776 598874

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=100.00  E-value=5.9e-41  Score=317.48  Aligned_cols=334  Identities=26%  Similarity=0.384  Sum_probs=278.1

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++.+++....+++.|.|++.++||+|||.++++|++|++.+.|..+. ..|.++|||++|+|+++|++++.|++||
T Consensus         1 mka~~~~~~~~~~~~~~~~~p~~~~~evlv~v~~~~i~~~d~~~~~g~~~~-~~~~~~g~e~~G~V~~~G~~v~~~~~Gd   79 (338)
T PRK09422          1 MKAAVVNKDHTGDVVVEKTLRPLKHGEALVKMEYCGVCHTDLHVANGDFGD-KTGRILGHEGIGIVKEVGPGVTSLKVGD   79 (338)
T ss_pred             CeEEEecCCCCCceEEEecCCCCCCCeEEEEEEEEeechhHHHHHcCCCCC-CCCccCCcccceEEEEECCCCccCCCCC
Confidence            799999998874448899999999999999999999999999988886543 3367899999999999999999999999


Q ss_pred             EEeecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        97 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      +|+..+ ..+|+.|.+|..+.+++|.....   .|+..+|                   +|++|+.++.++++++|++++
T Consensus        80 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~  137 (338)
T PRK09422         80 RVSIAWFFEGCGHCEYCTTGRETLCRSVKN---AGYTVDG-------------------GMAEQCIVTADYAVKVPEGLD  137 (338)
T ss_pred             EEEEccCCCCCCCChhhcCCCcccCCCccc---cCccccC-------------------cceeEEEEchHHeEeCCCCCC
Confidence            998654 56799999999999999986553   3444444                   999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHH-cCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~-~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      +.+++.+++.+.|||+++ ..++++++++|||+|+|++|++++++|+. .|+ +|+++++++++.++++++|++.+++.+
T Consensus       138 ~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~~~  215 (338)
T PRK09422        138 PAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYGAGGLGNLALQYAKNVFNA-KVIAVDINDDKLALAKEVGADLTINSK  215 (338)
T ss_pred             HHHeehhhcchhHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHhCCC-eEEEEeCChHHHHHHHHcCCcEEeccc
Confidence            999999999999999976 77889999999999999999999999998 599 899999999999999999999999875


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                      .  ..++.+.+++.++ ++|+++.+.++...+..++++++.+ |+++.+|...  ...+++...+..+...+.++.... 
T Consensus       216 ~--~~~~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~-  288 (338)
T PRK09422        216 R--VEDVAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAG-GRVVAVGLPP--ESMDLSIPRLVLDGIEVVGSLVGT-  288 (338)
T ss_pred             c--cccHHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCC-CEEEEEeeCC--CCceecHHHHhhcCcEEEEecCCC-
Confidence            3  1346667776665 6886655555666699999999997 9999998643  234556556666788887764322 


Q ss_pred             CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          335 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                        .++++.+++++.++.+..  .+ +.++++++++|++.+.++.. +|+++.+.
T Consensus       289 --~~~~~~~~~l~~~g~l~~--~v-~~~~~~~~~~a~~~~~~~~~~gkvvv~~~  337 (338)
T PRK09422        289 --RQDLEEAFQFGAEGKVVP--KV-QLRPLEDINDIFDEMEQGKIQGRMVIDFT  337 (338)
T ss_pred             --HHHHHHHHHHHHhCCCCc--cE-EEEcHHHHHHHHHHHHcCCccceEEEecC
Confidence              357889999999997643  35 46899999999999988765 49998764

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=100.00  E-value=5.4e-41  Score=317.55  Aligned_cols=334  Identities=30%  Similarity=0.458  Sum_probs=286.3

Q ss_pred             eeeeeecCCCCC-eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC-CCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           17 CRAAIATAPGEP-LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        17 ~ka~~~~~~~~~-~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      ||++++..++++ +.+.+.|.|.+++++|+|++.++++|++|+....|.++ ...+|.++|+|++|+|+++|++++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~g~~~~G~v~~~G~~v~~~~~   80 (338)
T cd08254           1 MKAWRFHKGSKGLLVLEEVPVPEPGPGEVLVKVKAAGVCHSDLHILDGGVPTLTKLPLTLGHEIAGTVVEVGAGVTNFKV   80 (338)
T ss_pred             CeeEEEecCCCCceEEeccCCCCCCCCeEEEEEEEEeeccHhHHHHcCCCcccCCCCEeccccccEEEEEECCCCccCCC
Confidence            799999999987 67788899999999999999999999999999888765 2455788999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||+|+..+..+|+.|.+|+.++.+.|.....   .|...+|                   +|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp~~~  138 (338)
T cd08254          81 GDRVAVPAVIPCGACALCRRGRGNLCLNQGM---PGLGIDG-------------------GFAEYIVVPARALVPVPDGV  138 (338)
T ss_pred             CCEEEECCCCCCCCChhhhCcCcccCCCCCc---cccccCC-------------------cceeeEEechHHeEECCCCC
Confidence            9999999999999999999999999965432   3443344                   99999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++.+++.++..+.|||.++.....+.++++|||.|+|.+|++++++|+..|+ +|+++++++++.++++++|++++++.+
T Consensus       139 ~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~~g~~~~~~~~  217 (338)
T cd08254         139 PFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKELGADEVLNSL  217 (338)
T ss_pred             CHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCEEEcCC
Confidence            9999999999999999988777889999999998889999999999999999 799999999999999999999998877


Q ss_pred             CCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          255 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      +   ..+.+.+ +.+.+ ++|+++||+|....+..++++++++ |+++.+|...  ....++...++.++..+.+++.. 
T Consensus       218 ~---~~~~~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~-  289 (338)
T cd08254         218 D---DSPKDKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPG-GRIVVVGLGR--DKLTVDLSDLIARELRIIGSFGG-  289 (338)
T ss_pred             C---cCHHHHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcC-CEEEEECCCC--CCCccCHHHHhhCccEEEEeccC-
Confidence            6   5565656 44555 8999999999877689999999997 9999998643  23445666677788888886532 


Q ss_pred             CCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          334 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                        ..+.+..++++++++.+.+.   .+.+++++++++++.+.+++. +|+|+++
T Consensus       290 --~~~~~~~~~~ll~~~~l~~~---~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  338 (338)
T cd08254         290 --TPEDLPEVLDLIAKGKLDPQ---VETRPLDEIPEVLERLHKGKVKGRVVLVP  338 (338)
T ss_pred             --CHHHHHHHHHHHHcCCCccc---ceeEcHHHHHHHHHHHHcCCccceEEEeC
Confidence              24678899999999977654   478999999999999988765 4998864

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=100.00  E-value=2.7e-41  Score=320.33  Aligned_cols=319  Identities=18%  Similarity=0.217  Sum_probs=255.2

Q ss_pred             CCCCcceeeeeecCCC-C-----CeEEEE---eecC-CCCCCeEEEEEceeccCcccccccccCCCCCCCCccccc--ce
Q 016507           11 AGKPIQCRAAIATAPG-E-----PLVIDE---VIVD-PPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH--EA   78 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~-~-----~~~~~~---~~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~--e~   78 (388)
                      +...+++|.+++.+.- .     .|++++   ++.| ++++||||||+.|+++|+.|...+.+......+|.++|+  |+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~gevlVkv~a~~inp~~~~~~~~~~~~~~~p~~~G~~~~~   82 (348)
T PLN03154          3 EGQVVENKQVILKNYIDGIPKETDMEVKLGNKIELKAPKGSGAFLVKNLYLSCDPYMRGRMRDFHDSYLPPFVPGQRIEG   82 (348)
T ss_pred             CCccccceEEEEecCCCCCCCcccEEEEeecccCCCCCCCCCeEEEEEEEEccCHHHHHhhhccCCCCCCCcCCCCeeEe
Confidence            4455667888884332 1     188877   4666 358999999999999999987654433332345889998  88


Q ss_pred             eEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceee
Q 016507           79 IGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (388)
Q Consensus        79 ~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~  158 (388)
                      +|+|..+|+++++|++||+|+..                                                    |+|+|
T Consensus        83 ~G~v~~vg~~v~~~~~Gd~V~~~----------------------------------------------------~~~ae  110 (348)
T PLN03154         83 FGVSKVVDSDDPNFKPGDLISGI----------------------------------------------------TGWEE  110 (348)
T ss_pred             eEEEEEEecCCCCCCCCCEEEec----------------------------------------------------CCcEE
Confidence            99999999999999999999621                                                    38999


Q ss_pred             eEEeecCc--eEE--cCCCCCcc-ccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE
Q 016507          159 YTVLDIAH--VVK--VDPTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (388)
Q Consensus       159 ~~~~~~~~--~~~--lP~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~  232 (388)
                      |+.++.+.  +++  +|++++++ +|++++++++|||+++...+++++|++|||+|+ |++|++++|+|+.+|+ +|+++
T Consensus       111 y~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~-~Vi~~  189 (348)
T PLN03154        111 YSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYAGFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGC-YVVGS  189 (348)
T ss_pred             EEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEE
Confidence            99998753  544  59999986 688999999999998877888999999999997 9999999999999999 89999


Q ss_pred             cCCchHHHHHH-HcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCc
Q 016507          233 DVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  311 (388)
Q Consensus       233 ~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  311 (388)
                      ++++++.++++ ++|+++++|+++  ..++.+.+++.+++++|++|||+|+.. +..++++++++ |+++.+|.......
T Consensus       190 ~~~~~k~~~~~~~lGa~~vi~~~~--~~~~~~~i~~~~~~gvD~v~d~vG~~~-~~~~~~~l~~~-G~iv~~G~~~~~~~  265 (348)
T PLN03154        190 AGSSQKVDLLKNKLGFDEAFNYKE--EPDLDAALKRYFPEGIDIYFDNVGGDM-LDAALLNMKIH-GRIAVCGMVSLNSL  265 (348)
T ss_pred             cCCHHHHHHHHHhcCCCEEEECCC--cccHHHHHHHHCCCCcEEEEECCCHHH-HHHHHHHhccC-CEEEEECccccCCC
Confidence            99999999987 799999999864  136777888777668999999999864 89999999997 99999997432210


Q ss_pred             -c---ccCHHHHHhcCcEEEEeeecCCC--ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          312 -L---SLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       312 -~---~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                       .   .++...++.+++++.|++...+.  ..+.++++++++++|++.+  .++++|+|+++.+|++.+++++. +|+||
T Consensus       266 ~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~~~G~l~~--~~~~~~~L~~~~~A~~~l~~g~~~GKvVl  343 (348)
T PLN03154        266 SASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYYKQGKIVY--IEDMSEGLESAPAALVGLFSGKNVGKQVI  343 (348)
T ss_pred             CCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHHHCCCccC--ceecccCHHHHHHHHHHHHcCCCCceEEE
Confidence             0   13555677889999998754331  1245788999999997764  47788999999999999998876 59999


Q ss_pred             eeCC
Q 016507          385 WMGE  388 (388)
Q Consensus       385 ~~~~  388 (388)
                      ++.+
T Consensus       344 ~~~~  347 (348)
T PLN03154        344 RVAK  347 (348)
T ss_pred             EecC
Confidence            8753

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=100.00  E-value=1e-40  Score=316.47  Aligned_cols=337  Identities=26%  Similarity=0.461  Sum_probs=281.6

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++++++. +.+++.+.|++.++||+||+.++++|++|+....+.+. ..+|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~a~~~~~~~~-l~~~~~~~~~l~~~~v~v~v~~~~~n~~d~~~~~~~~~-~~~~~~~g~~~~G~V~~~g~~v~~~~~Gd   78 (343)
T cd08236           1 MKALVLTGPGD-LRYEDIPKPEPGPGEVLVKVKACGICGSDIPRYLGTGA-YHPPLVLGHEFSGTVEEVGSGVDDLAVGD   78 (343)
T ss_pred             CeeEEEecCCc-eeEEecCCCCCCCCeEEEEEEEEEECccchHhhcCCCC-CCCCcccCcceEEEEEEECCCCCcCCCCC
Confidence            68999999876 99999999999999999999999999999998877652 34578899999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      +|+..+...|+.|.+|..++...|+....   +|....|                   +|++|+.++.++++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lP~~~~~  136 (343)
T cd08236          79 RVAVNPLLPCGKCEYCKKGEYSLCSNYDY---IGSRRDG-------------------AFAEYVSVPARNLIKIPDHVDY  136 (343)
T ss_pred             EEEEcCCCCCCCChhHHCcChhhCCCcce---EecccCC-------------------cccceEEechHHeEECcCCCCH
Confidence            99998888999999999999999987543   3433334                   9999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      ++++++ ..++|||.++. ...+.++++|||+|+|.+|.+++++|+.+|+++|+++++++++.++++++|+++++++++ 
T Consensus       137 ~~aa~~-~~~~ta~~~l~-~~~~~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g~~~~~~~~~-  213 (343)
T cd08236         137 EEAAMI-EPAAVALHAVR-LAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELGADDTINPKE-  213 (343)
T ss_pred             HHHHhc-chHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEecCcc-
Confidence            999888 57889999874 778999999999988999999999999999944999998899999999999999998876 


Q ss_pred             CCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCcc-ccCHHHHHhcCcEEEEeeecCC
Q 016507          257 GDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                        .. .+.+.+..++ ++|++|||+|....+..++++++++ |+++.+|.......+ ..++..++.++..+.++.....
T Consensus       214 --~~-~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (343)
T cd08236         214 --ED-VEKVRELTEGRGADLVIEAAGSPATIEQALALARPG-GKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYS  289 (343)
T ss_pred             --cc-HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccc
Confidence              45 6677777776 7999999998876689999999997 999999965422112 2234445677888888875332


Q ss_pred             C--ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhc-Cce-eEEEE
Q 016507          335 K--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK-GKC-LRCVI  384 (388)
Q Consensus       335 ~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~-~~~-~kvvv  384 (388)
                      .  ..+.++++++++.++.+.+.+.+.+.+++++++++++.+.+ +.. +|+|+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~  343 (343)
T cd08236         290 APFPGDEWRTALDLLASGKIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL  343 (343)
T ss_pred             cccchhhHHHHHHHHHcCCCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence            1  14567889999999987654557789999999999999988 444 48774

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=8.1e-41  Score=316.95  Aligned_cols=324  Identities=23%  Similarity=0.325  Sum_probs=263.6

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC-----------CCCCCcccccceeEEEEEe
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-----------PAVFPRILGHEAIGVVESV   85 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-----------~~~~p~v~G~e~~G~Vv~v   85 (388)
                      |||+++.++  ++++++++.|++++++|+||+.++++|++|+..+.|...           ...+|.++|+|++|+|+++
T Consensus         1 m~a~~~~~~--~~~~~~~~~p~~~~~~v~V~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~v   78 (341)
T cd08262           1 MRAAVFRDG--PLVVRDVPDPEPGPGQVLVKVLACGICGSDLHATAHPEAMVDDAGGPSLMDLGADIVLGHEFCGEVVDY   78 (341)
T ss_pred             CceEEEeCC--ceEEEecCCCCCCCCeEEEEEEEEEEcccchHHHcCCCcccccccccccccCCCCcccccceeEEEEEe
Confidence            689999877  599999999999999999999999999999998877321           2235788999999999999


Q ss_pred             cCCCCC-CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 016507           86 GENVDG-VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (388)
Q Consensus        86 G~~v~~-~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~  164 (388)
                      |++++. |++||+|+..+...|+.|..|..+...             ..                   .|+|++|+.++.
T Consensus        79 G~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~-------------~~-------------------~g~~~~~~~v~~  126 (341)
T cd08262          79 GPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSP-------------EA-------------------PGGYAEYMLLSE  126 (341)
T ss_pred             CCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCc-------------CC-------------------CCceeeeEEech
Confidence            999997 999999999999999999999432110             01                   249999999999


Q ss_pred             CceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       165 ~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      +.++++|+++++++++ +...+++||++ ...++++++++|||+|+|++|.+++|+|+.+|++.++++++++++.+++++
T Consensus       127 ~~~~~lP~~~s~~~a~-~~~~~~~a~~~-~~~~~~~~g~~VlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~  204 (341)
T cd08262         127 ALLLRVPDGLSMEDAA-LTEPLAVGLHA-VRRARLTPGEVALVIGCGPIGLAVIAALKARGVGPIVASDFSPERRALALA  204 (341)
T ss_pred             HHeEECCCCCCHHHhh-hhhhHHHHHHH-HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence            9999999999999887 56688899987 478889999999999889999999999999999668888888999999999


Q ss_pred             cCCcEEEcCCCCCCccHHH---HHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHH
Q 016507          245 FGVTEFVNSKNCGDKSVSQ---IIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL  320 (388)
Q Consensus       245 lga~~v~~~~~~~~~~~~~---~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~  320 (388)
                      +|+++++++++   .+..+   .+.+.+.+ ++|++||++|+...+..++++++++ |+++.+|......  .+......
T Consensus       205 ~g~~~~i~~~~---~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~~~--~~~~~~~~  278 (341)
T cd08262         205 MGADIVVDPAA---DSPFAAWAAELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG-GRIVVVGVCMESD--NIEPALAI  278 (341)
T ss_pred             cCCcEEEcCCC---cCHHHHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEECCCCCCC--ccCHHHHh
Confidence            99999998765   32211   34444555 8999999999854588999999997 9999998753222  23333334


Q ss_pred             hcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          321 HSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       321 ~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      .+++.+.+....   ..+++++++++++++.+.+.+++.+.|+++++++|++.+.++.. +|+|++
T Consensus       279 ~~~~~~~~~~~~---~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~a~~~~~~~~~~~kvvv~  341 (341)
T cd08262         279 RKELTLQFSLGY---TPEEFADALDALAEGKVDVAPMVTGTVGLDGVPDAFEALRDPEHHCKILVD  341 (341)
T ss_pred             hcceEEEEEecc---cHHHHHHHHHHHHcCCCChHHheEEEeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            567777654321   23478899999999988876677899999999999999988765 488874

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=100.00  E-value=5.6e-42  Score=315.74  Aligned_cols=270  Identities=20%  Similarity=0.338  Sum_probs=226.7

Q ss_pred             ccccceeEEEEEecCCCC------CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCce
Q 016507           73 ILGHEAIGVVESVGENVD------GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGET  146 (388)
Q Consensus        73 v~G~e~~G~Vv~vG~~v~------~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~  146 (388)
                      ++|||++|+|+++|++|+      +|++||||++.+..+|+.|.+|+.++++.|.+...   +|+...+.          
T Consensus         1 v~GHE~~G~V~~vG~~v~~~~~~~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~~----------   67 (280)
T TIGR03366         1 VLGHEIVGEVVALRGGFTPADDGVPLRLGQRVVWSVTVPCGRCFRCRRGLPQKCDSLRK---YGHEALDS----------   67 (280)
T ss_pred             CCCcccceEEEEeCCCccccccCCCCCCCCEEEEcCCCCCCCChhhhCcCcccCCChhh---cCcccccC----------
Confidence            589999999999999999      89999999999999999999999999999987654   33221000          


Q ss_pred             ecccccccceeeeEEeecC-ceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC
Q 016507          147 IHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG  225 (388)
Q Consensus       147 ~~~~~~~g~~a~~~~~~~~-~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g  225 (388)
                        .....|+|+||+.++.+ +++++|+++++++++.+++.+.|||+++ +.....++++|||+|+|++|++++|+|+.+|
T Consensus        68 --~~~~~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G~G~vG~~~~~~ak~~G  144 (280)
T TIGR03366        68 --GWPLSGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVGAGMLGLTAAAAAAAAG  144 (280)
T ss_pred             --CccccccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEECCCHHHHHHHHHHHHcC
Confidence              00012599999999987 7999999999999999999999999876 4456679999999999999999999999999


Q ss_pred             CcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEc
Q 016507          226 ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       226 ~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +++|++++++++|.++++++|++++++.++     ..+.+++.+.+ ++|++||++|....+..++++++++ |+++.+|
T Consensus       145 ~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~-----~~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~-G~iv~~G  218 (280)
T TIGR03366       145 AARVVAADPSPDRRELALSFGATALAEPEV-----LAERQGGLQNGRGVDVALEFSGATAAVRACLESLDVG-GTAVLAG  218 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHcCCcEecCchh-----hHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEec
Confidence            956999998999999999999999988654     24556667766 8999999999888799999999997 9999999


Q ss_pred             cCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCC--CCCCCcceeeeEecchH
Q 016507          305 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK--ELELDKFVTHEMKFEEI  367 (388)
Q Consensus       305 ~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~l~~~  367 (388)
                      ........++++..++.+++++.|+...   ..++++++++++.++  +++++++++++|||+|+
T Consensus       219 ~~~~~~~~~i~~~~~~~~~~~i~g~~~~---~~~~~~~~~~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       219 SVFPGGPVALDPEQVVRRWLTIRGVHNY---EPRHLDQAVRFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             cCCCCCceeeCHHHHHhCCcEEEecCCC---CHHHHHHHHHHHHhhCCCCCHHHHhhcccccccC
Confidence            7543345677888888999999998532   246799999999984  67777899999999874

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=2.6e-40  Score=313.52  Aligned_cols=335  Identities=28%  Similarity=0.434  Sum_probs=285.3

Q ss_pred             eeeeeecCCC-CCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCCC
Q 016507           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        17 ~ka~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      |||+++.+++ ..+++.+.+.|.+.++||+||+.++++|++|+..+.|.++. ..+|.++|||++|+|+++|++++.|++
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~vG~~~~~~~~   80 (341)
T cd08297           1 MKAAVVEEFGEKPYEVKDVPVPEPGPGEVLVKLEASGVCHTDLHAALGDWPVKPKLPLIGGHEGAGVVVAVGPGVSGLKV   80 (341)
T ss_pred             CceEEeeccCCCCceEEEeeCCCCCCCeEEEEEEEeecchhHHHHHcCCCCcCCCCCccCCcccceEEEEeCCCCCCCCC
Confidence            7999998877 33999999999999999999999999999999988876543 345678999999999999999999999


Q ss_pred             CCEEeecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           95 GDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        95 Gd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      ||+|+..+ ...|+.|.+|..++.++|.+...   .|+...|                   +|++|+.++.+.++++|++
T Consensus        81 Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~s~~~~~~~~~~~lp~~  138 (341)
T cd08297          81 GDRVGVKWLYDACGKCEYCRTGDETLCPNQKN---SGYTVDG-------------------TFAEYAIADARYVTPIPDG  138 (341)
T ss_pred             CCEEEEecCCCCCCCCccccCCCcccCCCccc---cccccCC-------------------cceeEEEeccccEEECCCC
Confidence            99998765 57799999999999999987653   3443344                   9999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++.+++.++..+.|||+++.. .++.++++|||+|+ +.+|++++++|+.+|+ +|+++.+++++.+.++++|++++++
T Consensus       139 ~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~v~~  216 (341)
T cd08297         139 LSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGL-RVIAIDVGDEKLELAKELGADAFVD  216 (341)
T ss_pred             CCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCcEEEc
Confidence            9999999999999999997654 58999999999987 7799999999999999 8999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      .++   .++.+.+.+++++ ++|++||+.++...+..++++++++ |+++.+|... ....+++...++.++..+.+...
T Consensus       217 ~~~---~~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  291 (341)
T cd08297         217 FKK---SDDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPG-GTLVCVGLPP-GGFIPLDPFDLVLRGITIVGSLV  291 (341)
T ss_pred             CCC---ccHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcC-CEEEEecCCC-CCCCCCCHHHHHhcccEEEEecc
Confidence            877   5788888888866 8999999888777789999999997 9999998643 23345666666788999888643


Q ss_pred             cCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          332 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..   .++++.+++++.++.+.+  .+ +.|+++++++|++.+.++.. +|+|+++
T Consensus       292 ~~---~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~a~~~~~~~~~~gkvvi~~  341 (341)
T cd08297         292 GT---RQDLQEALEFAARGKVKP--HI-QVVPLEDLNEVFEKMEEGKIAGRVVVDF  341 (341)
T ss_pred             CC---HHHHHHHHHHHHcCCCcc--ee-EEEcHHHHHHHHHHHHcCCccceEEEeC
Confidence            32   367889999999997654  34 67999999999999988765 4999875

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=100.00  E-value=3.8e-40  Score=311.45  Aligned_cols=332  Identities=28%  Similarity=0.496  Sum_probs=280.7

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++.++++ +++.+.+.|++.++||+||+.++++|+.|+....|..+. .+|.++|+|++|+|+++|++++.|++||
T Consensus         1 ~~a~~~~~~~~-~~~~~~~~~~l~~~~v~v~v~~~~l~~~d~~~~~g~~~~-~~p~~~g~~~~G~v~~vG~~v~~~~~Gd   78 (334)
T cd08234           1 MKALVYEGPGE-LEVEEVPVPEPGPDEVLIKVAACGICGTDLHIYEGEFGA-APPLVPGHEFAGVVVAVGSKVTGFKVGD   78 (334)
T ss_pred             CeeEEecCCCc-eEEEeccCCCCCCCeEEEEEEEEeEchhhhHHhcCCCCC-CCCcccccceEEEEEEeCCCCCCCCCCC
Confidence            68999998885 999999999999999999999999999999988887653 3688999999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      +|+..+...|+.|.+|..++.++|.....   +|....|                   +|++|+.++.++++++|+++++
T Consensus        79 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~lP~~~~~  136 (334)
T cd08234          79 RVAVDPNIYCGECFYCRRGRPNLCENLTA---VGVTRNG-------------------GFAEYVVVPAKQVYKIPDNLSF  136 (334)
T ss_pred             EEEEcCCcCCCCCccccCcChhhCCCcce---eccCCCC-------------------cceeEEEecHHHcEECcCCCCH
Confidence            99999998999999999999999987653   3333344                   9999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      .+++.+ ..+.++++++ ..+++.++++|||+|+|.+|.+++++|+..|++.|+++++++++.++++++|++++++.++ 
T Consensus       137 ~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~-  213 (334)
T cd08234         137 EEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSR-  213 (334)
T ss_pred             HHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCC-
Confidence            998876 6788898876 7789999999999988999999999999999944888989999999999999988888776 


Q ss_pred             CCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC
Q 016507          257 GDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  335 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  335 (388)
                        ..+...  +.+.+ ++|++|||++....+..++++++++ |+++.+|.........++...++.+++.+.+....   
T Consensus       214 --~~~~~~--~~~~~~~vd~v~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  285 (334)
T cd08234         214 --EDPEAQ--KEDNPYGFDVVIEATGVPKTLEQAIEYARRG-GTVLVFGVYAPDARVSISPFEIFQKELTIIGSFIN---  285 (334)
T ss_pred             --CCHHHH--HHhcCCCCcEEEECCCChHHHHHHHHHHhcC-CEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccC---
Confidence              444444  33444 8999999998776689999999997 99999987543334555655555578888877532   


Q ss_pred             ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEE
Q 016507          336 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI  384 (388)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv  384 (388)
                       .+.++++++++.++++.+.++++++|+++++++|++.+.+...+|+|+
T Consensus       286 -~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~k~vi  333 (334)
T cd08234         286 -PYTFPRAIALLESGKIDVKGLVSHRLPLEEVPEALEGMRSGGALKVVV  333 (334)
T ss_pred             -HHHHHHHHHHHHcCCCChhhhEEEEecHHHHHHHHHHHhcCCceEEEe
Confidence             356888999999998876666788999999999999998843458876

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd05281 TDH Threonine dehydrogenase

Probab=100.00  E-value=2.7e-40  Score=313.34  Aligned_cols=336  Identities=26%  Similarity=0.426  Sum_probs=275.2

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCC---CCCCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||++++.++..+++.+.|.|+|+++|++||+.++++|+.|+.++.+..   ....+|.++|||++|+|+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~~v~~~~   80 (341)
T cd05281           1 MKAIVKTKAGPGAELVEVPVPKPGPGEVLIKVLAASICGTDVHIYEWDEWAQSRIKPPLIFGHEFAGEVVEVGEGVTRVK   80 (341)
T ss_pred             CcceEEecCCCceEEEeCCCCCCCCCeEEEEEEEEEEcccchHHHcCCCCccccCCCCcccccceEEEEEEECCCCCCCC
Confidence            6899999887669999999999999999999999999999988754421   1234577899999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+..+..+|+.|.+|..++.++|....   +.|....                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------------------g~~~~~v~v~~~~~~~lP~~  138 (341)
T cd05281          81 VGDYVSAETHIVCGKCYQCRTGNYHVCQNTK---ILGVDTD-------------------GCFAEYVVVPEENLWKNDKD  138 (341)
T ss_pred             CCCEEEECCccCCCCChHHHCcCcccCcccc---eEeccCC-------------------CcceEEEEechHHcEECcCC
Confidence            9999999888999999999999999996532   2332223                   49999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      ++.+++ ++...+.++++++.  ....++++|||.|+|.+|++++++|+.+|+.+|+++++++++.++++++|++++++.
T Consensus       139 ~~~~~a-~~~~~~~~a~~~~~--~~~~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~  215 (341)
T cd05281         139 IPPEIA-SIQEPLGNAVHTVL--AGDVSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADVVINP  215 (341)
T ss_pred             CCHHHh-hhhhHHHHHHHHHH--hcCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcceeeCc
Confidence            998555 55557888887654  456789999999889999999999999998668888888899999999999999987


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHH-HHHhcCcEEEEeee
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF-EVLHSGKILMGSLF  331 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~i~g~~~  331 (388)
                      ++   .++. .+.+++++ ++|++|||+|+......++++++++ |+++.+|....  ...+++. ....+++.+.++..
T Consensus       216 ~~---~~~~-~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~  288 (341)
T cd05281         216 RE---EDVV-EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPG-GRVSILGLPPG--PVDIDLNNLVIFKGLTVQGITG  288 (341)
T ss_pred             cc---ccHH-HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCCC--CcccccchhhhccceEEEEEec
Confidence            76   5677 78887776 9999999999877789999999997 99999986433  2233322 24556777877652


Q ss_pred             cCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          332 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      ..  ..+.+.++++++.++.+.+.+++.+.++++++++|++.+.+++.+|+|+++
T Consensus       289 ~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~gk~vv~~  341 (341)
T cd05281         289 RK--MFETWYQVSALLKSGKVDLSPVITHKLPLEDFEEAFELMRSGKCGKVVLYP  341 (341)
T ss_pred             CC--cchhHHHHHHHHHcCCCChhHheEEEecHHHHHHHHHHHhcCCCceEEecC
Confidence            22  235678899999999877666677899999999999999887745998863

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=100.00  E-value=1.5e-40  Score=312.81  Aligned_cols=310  Identities=22%  Similarity=0.242  Sum_probs=263.6

Q ss_pred             eeeeeecCCCCC---eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC-CCCCCcccccceeEEEEEecCCCCCC
Q 016507           17 CRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        17 ~ka~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      |||+++.+++.|   +++.++|.|.+.++||+|||.++++|++|+..+.|.++ ...+|.++|||++|+|+++|+++++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~~~p~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~p~~~G~e~~G~V~~~G~~v~~~   80 (324)
T cd08292           1 MRAAVHTQFGDPADVLEIGEVPKPTPGAGEVLVRTTLSPIHNHDLWTIRGTYGYKPELPAIGGSEAVGVVDAVGEGVKGL   80 (324)
T ss_pred             CeeEEEccCCChhHeEEEeecCCCCCCCCeEEEEEEEccCCHHHHHHhcCcCCCCCCCCCCCCcceEEEEEEeCCCCCCC
Confidence            689999888754   78899999999999999999999999999999888764 24568899999999999999999999


Q ss_pred             CCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCC
Q 016507           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (388)
Q Consensus        93 ~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~  172 (388)
                      ++||+|+..+                              .                   .|+|++|+.++...++++|+
T Consensus        81 ~~Gd~V~~~~------------------------------~-------------------~g~~~~~~~~~~~~~~~ip~  111 (324)
T cd08292          81 QVGQRVAVAP------------------------------V-------------------HGTWAEYFVAPADGLVPLPD  111 (324)
T ss_pred             CCCCEEEecc------------------------------C-------------------CCcceeEEEEchHHeEECCC
Confidence            9999997421                              0                   14999999999999999999


Q ss_pred             CCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      ++++++++.+++.+.|||+++ +.+++.+|++|||+|+ |.+|++++++|+.+|+ +++++.+++++.+.++++|+++++
T Consensus       112 ~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~  189 (324)
T cd08292         112 GISDEVAAQLIAMPLSALMLL-DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGI-NVINLVRRDAGVAELRALGIGPVV  189 (324)
T ss_pred             CCCHHHhhhccccHHHHHHHH-HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHhcCCCEEE
Confidence            999999999998999999865 5688999999999987 9999999999999999 888888888888888889999999


Q ss_pred             cCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          252 NSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      +.++   .++.+.+.+++++ ++|++|||+|+.. ...++++++++ |+++.+|... .....+++..++.++..+.++.
T Consensus       190 ~~~~---~~~~~~i~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~-g~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~  263 (324)
T cd08292         190 STEQ---PGWQDKVREAAGGAPISVALDSVGGKL-AGELLSLLGEG-GTLVSFGSMS-GEPMQISSGDLIFKQATVRGFW  263 (324)
T ss_pred             cCCC---chHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHhhcCC-cEEEEEecCC-CCCCcCCHHHHhhCCCEEEEEE
Confidence            8877   6788889998888 9999999999975 88999999997 9999998742 2344566666677899999887


Q ss_pred             ecCCC-------ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          331 FGGLK-------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       331 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      ...+.       ..+.++++++++.++.+.+.  +.+.|+++++.+|++.+.+... +|++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  324 (324)
T cd08292         264 GGRWSQEMSVEYRKRMIAELLTLALKGQLLLP--VEAVFDLGDAAKAAAASMRPGRAGKVLLR  324 (324)
T ss_pred             cHHhhhhcCHHHHHHHHHHHHHHHHCCCccCc--cccEecHHHHHHHHHHHHcCCCCceEEeC
Confidence            54321       12367889999999987654  4688999999999999887654 488763

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=100.00  E-value=5.1e-40  Score=311.25  Aligned_cols=331  Identities=26%  Similarity=0.404  Sum_probs=268.1

Q ss_pred             eecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccc-cCCC--CCCCCcccccceeEEEEEecCCCCCCCCCCE
Q 016507           21 IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDF--PAVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (388)
Q Consensus        21 ~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~-g~~~--~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~   97 (388)
                      +++++++ +++++.++|.++++||+||+.++++|++|+..++ +...  ...+|.++|+|++|+|+++|+++++|++||+
T Consensus         2 ~~~~~~~-~~~~~~~~p~l~~~~v~I~v~~~~i~~~d~~~~~~~~~~~~~~~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~   80 (339)
T cd08232           2 VIHAAGD-LRVEERPAPEPGPGEVRVRVAAGGICGSDLHYYQHGGFGTVRLREPMVLGHEVSGVVEAVGPGVTGLAPGQR   80 (339)
T ss_pred             eeccCCc-eEEEEcCCCCCCCCEEEEEEEEEEECcccHHHHcCCCCCcccccCCeecCccceEEEEeeCCCCCcCCCCCE
Confidence            4667766 9999999999999999999999999999988763 3321  1245778999999999999999999999999


Q ss_pred             EeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           98 VIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        98 V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      |+..+..+|++|.+|..|+.++|....+   +|.. ++               ....|+|++|+.++.+.++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~---------------~~~~g~~~~~v~v~~~~~~~iP~~~~~  142 (339)
T cd08232          81 VAVNPSRPCGTCDYCRAGRPNLCLNMRF---LGSAMRF---------------PHVQGGFREYLVVDASQCVPLPDGLSL  142 (339)
T ss_pred             EEEccCCcCCCChHHhCcCcccCccccc---eeecccc---------------CCCCCceeeEEEechHHeEECcCCCCH
Confidence            9999999999999999999999986432   2210 00               001249999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      ++|+. ..++++||+++.....+ ++++|||.|+|.+|.+++|+|+.+|+.+|+++++++++.++++++|++++++.++ 
T Consensus       143 ~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~~~vi~~~~-  219 (339)
T cd08232         143 RRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGADETVNLAR-  219 (339)
T ss_pred             HHhhh-cchHHHHHHHHHhcCCC-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCCCEEEcCCc-
Confidence            99876 46888999877555555 8999999888999999999999999867999988899999999999999998765 


Q ss_pred             CCccHHHHHHhhcC--CCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          257 GDKSVSQIIIDMTD--GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       257 ~~~~~~~~i~~~~~--g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                        ..+    .++..  +++|++|||+++...++.++++++++ |+++.+|...  .....++..++.+++.+.+...   
T Consensus       220 --~~~----~~~~~~~~~vd~vld~~g~~~~~~~~~~~L~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~---  287 (339)
T cd08232         220 --DPL----AAYAADKGDFDVVFEASGAPAALASALRVVRPG-GTVVQVGMLG--GPVPLPLNALVAKELDLRGSFR---  287 (339)
T ss_pred             --hhh----hhhhccCCCccEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--CCccCcHHHHhhcceEEEEEec---
Confidence              332    22222  26999999999766689999999997 9999998643  3344455555667888877642   


Q ss_pred             CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          335 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                       ..+.++++++++.++.+.+.+.+.++|+++++++|++.+.+++. +|+|+++
T Consensus       288 -~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~~  339 (339)
T cd08232         288 -FDDEFAEAVRLLAAGRIDVRPLITAVFPLEEAAEAFALAADRTRSVKVQLSF  339 (339)
T ss_pred             -CHHHHHHHHHHHHcCCCCchhheeEEecHHHHHHHHHHHHhCCCceeEEEeC
Confidence             23578899999999988766767899999999999999877654 5999864

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=7.9e-40  Score=308.74  Aligned_cols=330  Identities=32%  Similarity=0.485  Sum_probs=276.2

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++..+++++.+.++|.|.+.+++|+|++.++++|++|++.+.|..+...+|.++|||++|+|+++|++++.|++||
T Consensus         1 m~a~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd   80 (332)
T cd08259           1 MKAAILHKPNKPLQIEEVPDPEPGPGEVLIKVKAAGVCYRDLLFWKGFFPRGKYPLILGHEIVGTVEEVGEGVERFKPGD   80 (332)
T ss_pred             CeEEEEecCCCceEEEEccCCCCCCCeEEEEEEEEecchhhhHHhcCCCCCCCCCeeccccceEEEEEECCCCccCCCCC
Confidence            68999987666699999999999999999999999999999999988766556688999999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      +|+..+...|+.|.+|..+..++|.+..   ..|....|                   +|++|+.++...++++|+++++
T Consensus        81 ~V~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g-------------------~~~~~~~v~~~~~~~ip~~~~~  138 (332)
T cd08259          81 RVILYYYIPCGKCEYCLSGEENLCRNRA---EYGEEVDG-------------------GFAEYVKVPERSLVKLPDNVSD  138 (332)
T ss_pred             EEEECCCCCCcCChhhhCCCcccCCCcc---ccccccCC-------------------eeeeEEEechhheEECCCCCCH
Confidence            9999888899999999999999998642   24433344                   9999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      ++++.+++.+.|||+++.. +.+.++++|||+|+ |++|++++++++..|+ +|+++.+++++.+.+++++++.+++.+ 
T Consensus       139 ~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~-  215 (332)
T cd08259         139 ESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGA-RVIAVTRSPEKLKILKELGADYVIDGS-  215 (332)
T ss_pred             HHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHcCCcEEEecH-
Confidence            9999999999999998765 88999999999987 9999999999999999 889888888888988889988877543 


Q ss_pred             CCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC
Q 016507          256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  335 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  335 (388)
                         . +.+.+.+..  ++|++++++|... ...++++++++ |+++.+|..... ...++......++..+.+...   .
T Consensus       216 ---~-~~~~~~~~~--~~d~v~~~~g~~~-~~~~~~~~~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~---~  283 (332)
T cd08259         216 ---K-FSEDVKKLG--GADVVIELVGSPT-IEESLRSLNKG-GRLVLIGNVTPD-PAPLRPGLLILKEIRIIGSIS---A  283 (332)
T ss_pred             ---H-HHHHHHhcc--CCCEEEECCChHH-HHHHHHHhhcC-CEEEEEcCCCCC-CcCCCHHHHHhCCcEEEEecC---C
Confidence               2 555565543  7999999999877 88999999997 999999875322 122333334456777776631   2


Q ss_pred             ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          336 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      ...+++++++++.++.+.  ++++++|+++++.+|++.+.++.. +|+|++
T Consensus       284 ~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  332 (332)
T cd08259         284 TKADVEEALKLVKEGKIK--PVIDRVVSLEDINEALEDLKSGKVVGRIVLK  332 (332)
T ss_pred             CHHHHHHHHHHHHcCCCc--cceeEEEcHHHHHHHHHHHHcCCcccEEEeC
Confidence            245788899999999654  447899999999999999988765 488864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6.3e-40  Score=310.20  Aligned_cols=336  Identities=22%  Similarity=0.328  Sum_probs=282.1

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++...+.+  +++.+.+.|.+.+++|+|++.++++|++|+..+.|..+. ..+|.++|||++|+|+++|++++.|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (342)
T cd08266           1 MKAVVIRGHGGPEVLEYGDLPEPEPGPDEVLVRVKAAALNHLDLWVRRGMPGIKLPLPHILGSDGAGVVEAVGPGVTNVK   80 (342)
T ss_pred             CeEEEEecCCCccceeEeecCCCCCCCCeEEEEEEeeecCHHHHHHhcCCCCCCCCCCeecccceEEEEEEeCCCCCCCC
Confidence            689998844322  778888888889999999999999999999988886542 35578999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|++.++..|+.|.+|.++.+++|....+   +|....|                   +|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~g-------------------~~~~~~~~~~~~~~~~p~~  138 (342)
T cd08266          81 PGQRVVIYPGISCGRCEYCLAGRENLCAQYGI---LGEHVDG-------------------GYAEYVAVPARNLLPIPDN  138 (342)
T ss_pred             CCCEEEEccccccccchhhccccccccccccc---cccccCc-------------------ceeEEEEechHHceeCCCC
Confidence            99999999999999999999999999986432   4443344                   9999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++.+++.+++.+.+|++++.+...+.++++|+|+|+ +.+|++++++++..|+ +|+.+++++++.+.++.++.+.+++
T Consensus       139 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~  217 (342)
T cd08266         139 LSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGA-TVIATAGSEDKLERAKELGADYVID  217 (342)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCeEEe
Confidence            9999999999999999998888888999999999987 7999999999999999 8999989989999888888888887


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      ..+   .++.+.+.+.+.+ ++|++++++|... +...+++++++ |+++.+|.... ....++....+.+++.+.+...
T Consensus       218 ~~~---~~~~~~~~~~~~~~~~d~~i~~~g~~~-~~~~~~~l~~~-G~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  291 (342)
T cd08266         218 YRK---EDFVREVRELTGKRGVDVVVEHVGAAT-WEKSLKSLARG-GRLVTCGATTG-YEAPIDLRHVFWRQLSILGSTM  291 (342)
T ss_pred             cCC---hHHHHHHHHHhCCCCCcEEEECCcHHH-HHHHHHHhhcC-CEEEEEecCCC-CCCCcCHHHHhhcceEEEEEec
Confidence            765   5677777777666 8999999999865 88999999997 99999986533 2334555455677888887753


Q ss_pred             cCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          332 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..   ...+.++++++.++.+.  +++++.|+++++++|++.+.++.. +|+++++
T Consensus       292 ~~---~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  342 (342)
T cd08266         292 GT---KAELDEALRLVFRGKLK--PVIDSVFPLEEAAEAHRRLESREQFGKIVLTP  342 (342)
T ss_pred             CC---HHHHHHHHHHHHcCCcc--cceeeeEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            32   34688899999999654  447899999999999999887655 4888763

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=100.00  E-value=3.2e-40  Score=312.41  Aligned_cols=313  Identities=19%  Similarity=0.200  Sum_probs=252.9

Q ss_pred             cceeeeeecCCCC-CeEEEEeec----CCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccce--eEEEEEec
Q 016507           15 IQCRAAIATAPGE-PLVIDEVIV----DPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEA--IGVVESVG   86 (388)
Q Consensus        15 ~~~ka~~~~~~~~-~~~~~~~~~----p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~--~G~Vv~vG   86 (388)
                      -.+|+++...+.. .|++.+.++    |+|++|||||||+|++||+.|++...|.... ..+|.++|+++  .|.+..+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~p~~~~vlv~v~~~~inp~d~~~~~g~~~~~~~~p~~~g~~~~g~~~~~~v~   85 (338)
T cd08295           6 VILKAYVTGFPKESDLELRTTKLTLKVPPGGSGDVLVKNLYLSCDPYMRGRMKGHDDSLYLPPFKPGEVITGYGVAKVVD   85 (338)
T ss_pred             EEEecCCCCCCCccceEEEEecCCcCCCCCCCCeEEEEEEEEeeCHHHHHhhccCCccccCCCcCCCCeEeccEEEEEEe
Confidence            3467777666653 388888887    8899999999999999999999988885432 34578899865  45666688


Q ss_pred             CCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec-C
Q 016507           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-A  165 (388)
Q Consensus        87 ~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~-~  165 (388)
                      ++++.|++||+|+..                                                    |+|+||++++. .
T Consensus        86 ~~v~~~~vGd~V~~~----------------------------------------------------g~~aey~~v~~~~  113 (338)
T cd08295          86 SGNPDFKVGDLVWGF----------------------------------------------------TGWEEYSLIPRGQ  113 (338)
T ss_pred             cCCCCCCCCCEEEec----------------------------------------------------CCceeEEEecchh
Confidence            999999999999621                                                    38999999999 7


Q ss_pred             ceEEcC-CCCCcc-ccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH
Q 016507          166 HVVKVD-PTVPPN-RACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (388)
Q Consensus       166 ~~~~lP-~~~~~~-~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~  242 (388)
                      .++++| +++++. +++++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+++
T Consensus       114 ~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~-~Vi~~~~~~~~~~~~  192 (338)
T cd08295         114 DLRKIDHTDVPLSYYLGLLGMPGLTAYAGFYEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGC-YVVGSAGSDEKVDLL  192 (338)
T ss_pred             ceeecCCCCCCHHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999995 678887 799999999999998878889999999999997 9999999999999999 899999999999999


Q ss_pred             HH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCc----cccCHH
Q 016507          243 KR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ----LSLSSF  317 (388)
Q Consensus       243 ~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~----~~~~~~  317 (388)
                      ++ +|+++++++.+  ..++.+.+++.+++++|++||++|+.. +..++++++++ |+++.+|.......    ...+..
T Consensus       193 ~~~lGa~~vi~~~~--~~~~~~~i~~~~~~gvd~v~d~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~  268 (338)
T cd08295         193 KNKLGFDDAFNYKE--EPDLDAALKRYFPNGIDIYFDNVGGKM-LDAVLLNMNLH-GRIAACGMISQYNLEWPEGVRNLL  268 (338)
T ss_pred             HHhcCCceeEEcCC--cccHHHHHHHhCCCCcEEEEECCCHHH-HHHHHHHhccC-cEEEEecccccCCCCCCCCccCHH
Confidence            98 99999998654  136777787776559999999999855 89999999997 99999986432111    113445


Q ss_pred             HHHhcCcEEEEeeecCCCc--cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          318 EVLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       318 ~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      .++.+++++.++....+..  .+.++++++++.+|++++.  +...|+++++.+|++.+++++. +|+|+++
T Consensus       269 ~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~GkvVl~~  338 (338)
T cd08295         269 NIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYIKEGKLKYV--EDIADGLESAPEAFVGLFTGSNIGKQVVKV  338 (338)
T ss_pred             HHhhccceeeEEEehhhHHHHHHHHHHHHHHHHCCCeEce--eecccCHHHHHHHHHHHhcCCCCceEEEEC
Confidence            5667788888865543321  2347788999999977654  5567999999999999988765 5999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=5.6e-40  Score=312.28  Aligned_cols=324  Identities=23%  Similarity=0.290  Sum_probs=262.8

Q ss_pred             eeeeeecCCCCC--eEEEE-eecCCCCCCeEEEEEceeccCcccccccccCCC--------------------CCCCCcc
Q 016507           17 CRAAIATAPGEP--LVIDE-VIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------------------PAVFPRI   73 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~-~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------------------~~~~p~v   73 (388)
                      |||+++.+++.+  +.+.+ .+.|++.+++|+|||.++++|++|++++.|.++                    ...+|.+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~   80 (350)
T cd08274           1 MRAVLLTGHGGLDKLVYRDDVPVPTPAPGEVLIRVGACGVNNTDINTREGWYSTEVDGATDSTGAGEAGWWGGTLSFPRI   80 (350)
T ss_pred             CeEEEEeccCCccceeecccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCccccccccccccccccccCCCCCCcc
Confidence            688888876643  55543 577788999999999999999999998877543                    2346889


Q ss_pred             cccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccc
Q 016507           74 LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSV  153 (388)
Q Consensus        74 ~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~  153 (388)
                      +|||++|+|+++|+++++|++||+|+..+..+|+.|..|..     |.      .+|...+                   
T Consensus        81 ~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~-----~~------~~~~~~~-------------------  130 (350)
T cd08274          81 QGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPAD-----ID------YIGSERD-------------------  130 (350)
T ss_pred             cCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCcccccc-----cc------ccCCCCC-------------------
Confidence            99999999999999999999999999988888888766421     21      0222223                   


Q ss_pred             cceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE
Q 016507          154 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (388)
Q Consensus       154 g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~  232 (388)
                      |+|++|+.++...++++|+++++.+++.+++.+.|||+++ ...++.++++|||+|+ |++|++++++|+.+|+ +|+++
T Consensus       131 g~~~~~~~v~~~~~~~ip~~~~~~~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~vi~~  208 (350)
T cd08274         131 GGFAEYTVVPAENAYPVNSPLSDVELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGA-IVIAV  208 (350)
T ss_pred             ccceEEEEecHHHceeCCCCCCHHHHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCC-EEEEE
Confidence            3999999999999999999999999999999999999976 7788999999999998 9999999999999999 78888


Q ss_pred             cCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCc
Q 016507          233 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  311 (388)
Q Consensus       233 ~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  311 (388)
                      ++++ +.+.++++|++.+++...   ....+  .+.+.+ ++|++||++|+.. +..++++++.+ |+++.+|... ...
T Consensus       209 ~~~~-~~~~~~~~g~~~~~~~~~---~~~~~--~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~-~~~  279 (350)
T cd08274         209 AGAA-KEEAVRALGADTVILRDA---PLLAD--AKALGGEPVDVVADVVGGPL-FPDLLRLLRPG-GRYVTAGAIA-GPV  279 (350)
T ss_pred             eCch-hhHHHHhcCCeEEEeCCC---ccHHH--HHhhCCCCCcEEEecCCHHH-HHHHHHHhccC-CEEEEecccC-Ccc
Confidence            7655 888888999987766544   33333  445555 8999999999865 89999999997 9999998642 222


Q ss_pred             cccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          312 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       312 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..+++..++.++..+.++....   .+.++++++++.++.+.  +++.+.|+++++.+|++.+.++.. +|+|+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvvi~~  350 (350)
T cd08274         280 VELDLRTLYLKDLTLFGSTLGT---REVFRRLVRYIEEGEIR--PVVAKTFPLSEIREAQAEFLEKRHVGKLVLVP  350 (350)
T ss_pred             ccCCHHHhhhcceEEEEeecCC---HHHHHHHHHHHHCCCcc--cccccccCHHHHHHHHHHHhcCCCceEEEEeC
Confidence            4667777778899998886432   35788999999999654  447799999999999999987665 4888763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=6e-40  Score=308.91  Aligned_cols=318  Identities=25%  Similarity=0.344  Sum_probs=263.9

Q ss_pred             eeeeeecCCC-CCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++..++ +.+++.+.+.|+++++||+||+.++++|++|+..+.+. ....+|.++|||++|+|+++|++++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~v~v~~~~i~~~d~~~~~~~-~~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (325)
T cd08264           1 MKALVFEKSGIENLKVEDVKDPKPGPGEVLIRVKMAGVNPVDYNVINAV-KVKPMPHIPGAEFAGVVEEVGDHVKGVKKG   79 (325)
T ss_pred             CeeEEeccCCCCceEEEeccCCCCCCCeEEEEEEEEEechHHHHHHhCC-CCCCCCeecccceeEEEEEECCCCCCCCCC
Confidence            6899997766 34888888888899999999999999999999887653 222457889999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |+|+..+...|+.|..|..++.++|+...+   .|+...|                   +|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~~c~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~  137 (325)
T cd08264          80 DRVVVYNRVFDGTCDMCLSGNEMLCRNGGI---IGVVSNG-------------------GYAEYIVVPEKNLFKIPDSIS  137 (325)
T ss_pred             CEEEECCCcCCCCChhhcCCCccccCccce---eeccCCC-------------------ceeeEEEcCHHHceeCCCCCC
Confidence            999998888999999999999999986543   3333334                   999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      +++++.+++.+.|||+++. .++++++++|+|+|+ |++|++++++|+.+|+ +|+++.+    .++++++|++++++.+
T Consensus       138 ~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~-~v~~~~~----~~~~~~~g~~~~~~~~  211 (325)
T cd08264         138 DELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGA-EVIAVSR----KDWLKEFGADEVVDYD  211 (325)
T ss_pred             HHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeH----HHHHHHhCCCeeecch
Confidence            9999999999999999875 488999999999997 9999999999999999 7888752    3777889999998765


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                      +     ..+.+.+++ +++|+++|++|.. .+..++++++++ |+++.+|.. ......+++..+..++..+.++..+. 
T Consensus       212 ~-----~~~~l~~~~-~~~d~vl~~~g~~-~~~~~~~~l~~~-g~~v~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-  281 (325)
T cd08264         212 E-----VEEKVKEIT-KMADVVINSLGSS-FWDLSLSVLGRG-GRLVTFGTL-TGGEVKLDLSDLYSKQISIIGSTGGT-  281 (325)
T ss_pred             H-----HHHHHHHHh-CCCCEEEECCCHH-HHHHHHHhhccC-CEEEEEecC-CCCCCccCHHHHhhcCcEEEEccCCC-
Confidence            4     245566666 6899999999985 599999999997 999999864 22335667777777788888875332 


Q ss_pred             CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce
Q 016507          335 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC  379 (388)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~  379 (388)
                        .++++++++++...  .  ..++++|+++++++|++.+.+.+.
T Consensus       282 --~~~~~~~~~l~~~~--~--~~~~~~~~~~~~~~a~~~~~~~~~  320 (325)
T cd08264         282 --RKELLELVKIAKDL--K--VKVWKTFKLEEAKEALKELFSKER  320 (325)
T ss_pred             --HHHHHHHHHHHHcC--C--ceeEEEEcHHHHHHHHHHHHcCCC
Confidence              35788899988533  3  236689999999999998887654

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=100.00  E-value=3.2e-39  Score=305.91  Aligned_cols=331  Identities=26%  Similarity=0.452  Sum_probs=273.1

Q ss_pred             cCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCC---CCCCCCcccccceeEEEEEecCCCCCCCCCCEEe
Q 016507           23 TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIGVVESVGENVDGVVEGDVVI   99 (388)
Q Consensus        23 ~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~   99 (388)
                      ++|+.++++++.|.|.|+++||+||+.++++|++|+.++.+..   ....+|.++|+|++|+|+++|++++.|++||+|+
T Consensus         5 ~~~~~~~~l~~~~~p~~~~~ev~V~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   84 (340)
T TIGR00692         5 TKPGYGAELTEVPVPEPGPGEVLIKVLATSICGTDVHIYNWDEWAQSRIKPPQVVGHEVAGEVVGIGPGVEGIKVGDYVS   84 (340)
T ss_pred             ccCCCCcEEEECCCCCCCCCeEEEEEEEEEEcccCHHHHcCCCCCCCCCCCCcccccceEEEEEEECCCCCcCCCCCEEE
Confidence            5677789999999999999999999999999999998765532   1224577899999999999999999999999999


Q ss_pred             ecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCcccc
Q 016507          100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA  179 (388)
Q Consensus       100 ~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~a  179 (388)
                      ..+...|+.|..|..+..+.|+..++   .|+...                   |+|++|+.++.+.++++|++++.++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~~~~~~a  142 (340)
T TIGR00692        85 VETHIVCGKCYACRRGQYHVCQNTKI---FGVDTD-------------------GCFAEYAVVPAQNIWKNPKSIPPEYA  142 (340)
T ss_pred             ECCcCCCCCChhhhCcChhhCcCcce---EeecCC-------------------CcceeEEEeehHHcEECcCCCChHhh
Confidence            98889999999999999999987643   233223                   49999999999999999999998655


Q ss_pred             ccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCc
Q 016507          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~  259 (388)
                       +++..+.+|++++  .....++++|+|.|+|++|.+++++|+.+|++.|+++++++++.++++++|++++++..+   .
T Consensus       143 -~~~~~~~~a~~~~--~~~~~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~---~  216 (340)
T TIGR00692       143 -TIQEPLGNAVHTV--LAGPISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGATYVVNPFK---E  216 (340)
T ss_pred             -hhcchHHHHHHHH--HccCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCcEEEcccc---c
Confidence             5666888888865  345788999999888999999999999999944888888888999999999999998876   6


Q ss_pred             cHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHH-HHHhcCcEEEEeeecCCCcc
Q 016507          260 SVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF-EVLHSGKILMGSLFGGLKAK  337 (388)
Q Consensus       260 ~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~  337 (388)
                      ++.+.+.+++++ ++|++|||+|+...+...+++++++ |+++.+|....  ...++.. .+..+++.+.+...  ....
T Consensus       217 ~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~-g~~v~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~  291 (340)
T TIGR00692       217 DVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPG-GRVSLLGLPPG--KVTIDFTNKVIFKGLTIYGITG--RHMF  291 (340)
T ss_pred             CHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCC-CEEEEEccCCC--CcccchhhhhhhcceEEEEEec--CCch
Confidence            788888888776 8999999999877689999999997 99999987532  2233333 45566777776642  1223


Q ss_pred             CcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          338 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      +.+.++++++.++++.+.+++.+.++++++.++++.+.++..+|+|+.+
T Consensus       292 ~~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~~gkvvv~~  340 (340)
T TIGR00692       292 ETWYTVSRLIQSGKLDLDPIITHKFKFDKFEKGFELMRSGQTGKVILSL  340 (340)
T ss_pred             hhHHHHHHHHHcCCCChHHheeeeeeHHHHHHHHHHHhcCCCceEEEeC
Confidence            5678899999999887656678999999999999998877667999864

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=100.00  E-value=4.1e-39  Score=303.92  Aligned_cols=328  Identities=27%  Similarity=0.426  Sum_probs=273.6

Q ss_pred             eeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCCE
Q 016507           18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDV   97 (388)
Q Consensus        18 ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~   97 (388)
                      ||+++.+++..+++++.|.|.+.+++|+|++.++++|++|+..+.|......+|.++|||++|+|+++|+++++|++||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~p~~~g~e~~G~v~~~g~~~~~~~~Gd~   80 (330)
T cd08245           1 KAAVVHAAGGPLEPEEVPVPEPGPGEVLIKIEACGVCHTDLHAAEGDWGGSKYPLVPGHEIVGEVVEVGAGVEGRKVGDR   80 (330)
T ss_pred             CeEEEecCCCCceEEeccCCCCCCCeEEEEEEEEeccHHHHHHHcCCCCCCCCCcccCccceEEEEEECCCCcccccCCE
Confidence            68899888656999999999999999999999999999999998887654456889999999999999999999999999


Q ss_pred             EeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc
Q 016507           98 VIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP  176 (388)
Q Consensus        98 V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~  176 (388)
                      |++.+. ..|++|.+|.+++++.|.+..+   +++...|                   +|++|+.++.++++++|+++++
T Consensus        81 V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~v~~~~~~~~p~~~~~  138 (330)
T cd08245          81 VGVGWLVGSCGRCEYCRRGLENLCQKAVN---TGYTTQG-------------------GYAEYMVADAEYTVLLPDGLPL  138 (330)
T ss_pred             EEEccccCCCCCChhhhCcCcccCcCccc---cCcccCC-------------------ccccEEEEcHHHeEECCCCCCH
Confidence            987554 6799999999999999998654   3332233                   9999999999999999999999


Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      .+++.+++.+.|||.++.. .++.++++|||+|+|.+|++++++|+..|+ +|+++++++++.++++++|++.+++... 
T Consensus       139 ~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~-  215 (330)
T cd08245         139 AQAAPLLCAGITVYSALRD-AGPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGADEVVDSGA-  215 (330)
T ss_pred             HHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCcEEeccCC-
Confidence            9999999999999997754 789999999999888899999999999999 8999999999999999999998887655 


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCc
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA  336 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  336 (388)
                        ..+...    ..+++|++||+++.......++++++++ |+++.++.... ....++...++.++.++.+++...   
T Consensus       216 --~~~~~~----~~~~~d~vi~~~~~~~~~~~~~~~l~~~-G~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---  284 (330)
T cd08245         216 --ELDEQA----AAGGADVILVTVVSGAAAEAALGGLRRG-GRIVLVGLPES-PPFSPDIFPLIMKRQSIAGSTHGG---  284 (330)
T ss_pred             --cchHHh----ccCCCCEEEECCCcHHHHHHHHHhcccC-CEEEEECCCCC-CccccchHHHHhCCCEEEEeccCC---
Confidence              333222    2247999999988776689999999997 99999986422 233333455677788888876433   


Q ss_pred             cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEE
Q 016507          337 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  384 (388)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv  384 (388)
                      ...++.+++++.++.+.+   ..+.|+++++++|++.+.++... |+|+
T Consensus       285 ~~~~~~~~~ll~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~  330 (330)
T cd08245         285 RADLQEALDFAAEGKVKP---MIETFPLDQANEAYERMEKGDVRFRFVL  330 (330)
T ss_pred             HHHHHHHHHHHHcCCCcc---eEEEEcHHHHHHHHHHHHcCCCCcceeC
Confidence            357888999999997654   34789999999999998877654 7664

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=100.00  E-value=2.7e-39  Score=304.93  Aligned_cols=305  Identities=19%  Similarity=0.209  Sum_probs=246.6

Q ss_pred             ceeeeeecCC--CCC----eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           16 QCRAAIATAP--GEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        16 ~~ka~~~~~~--~~~----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      +|||+++.++  +.+    ++++++|.|+|++|||||||.+++||+.|.....+   ..++|.++|+|++|+|++   .+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~evlVkv~a~~in~~~~~~~~~---~~~~p~v~G~e~~G~V~~---~~   75 (329)
T cd08294           2 KAKTWVLKKHFDGKPKESDFELVEEELPPLKDGEVLCEALFLSVDPYMRPYSKR---LNEGDTMIGTQVAKVIES---KN   75 (329)
T ss_pred             CceEEEEecCCCCCCCccceEEEecCCCCCCCCcEEEEEEEEecCHHHhccccc---CCCCCcEecceEEEEEec---CC
Confidence            5899999883  332    88899999999999999999999999987653221   124688999999999985   45


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC---c
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA---H  166 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~---~  166 (388)
                      +.|++||+|+..                                                    ++|++|+.++.+   .
T Consensus        76 ~~~~~Gd~V~~~----------------------------------------------------~~~~~~~~~~~~~~~~  103 (329)
T cd08294          76 SKFPVGTIVVAS----------------------------------------------------FGWRTHTVSDGKDQPD  103 (329)
T ss_pred             CCCCCCCEEEee----------------------------------------------------CCeeeEEEECCccccc
Confidence            679999999631                                                    278999999999   9


Q ss_pred             eEEcCCCCC--c---cccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH
Q 016507          167 VVKVDPTVP--P---NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (388)
Q Consensus       167 ~~~lP~~~~--~---~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~  240 (388)
                      ++++|++++  .   ..+++++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.+
T Consensus       104 ~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~al~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~-~vi~~~~s~~~~~  182 (329)
T cd08294         104 LYKLPADLPDDLPPSLALGVLGMPGLTAYFGLLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGC-KVIGCAGSDDKVA  182 (329)
T ss_pred             eEECCccccccCChHHHHHhcccHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHH
Confidence            999999998  2   2234678899999998888899999999999986 9999999999999999 8999999999999


Q ss_pred             HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCC---c--cccC
Q 016507          241 IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS---Q--LSLS  315 (388)
Q Consensus       241 ~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~---~--~~~~  315 (388)
                      +++++|+++++++++   .++.+.+++.+++++|++||++|+.. +..++++++++ |+++.+|......   .  ....
T Consensus       183 ~l~~~Ga~~vi~~~~---~~~~~~v~~~~~~gvd~vld~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~  257 (329)
T cd08294         183 WLKELGFDAVFNYKT---VSLEEALKEAAPDGIDCYFDNVGGEF-SSTVLSHMNDF-GRVAVCGSISTYNDKEPKKGPYV  257 (329)
T ss_pred             HHHHcCCCEEEeCCC---ccHHHHHHHHCCCCcEEEEECCCHHH-HHHHHHhhccC-CEEEEEcchhccCCCCCCcCccc
Confidence            999999999999887   67888888877668999999999865 89999999997 9999998532111   1  1223


Q ss_pred             HHHHHhcCcEEEEeeecCCC--ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          316 SFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       316 ~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ...+..+++++.+++...+.  ..+.++++++++.++++.+.  ...+|+++++++|++.+.+++. +|+|+++
T Consensus       258 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvv~~  329 (329)
T cd08294         258 QETIIFKQLKMEGFIVYRWQDRWPEALKQLLKWIKEGKLKYR--EHVTEGFENMPQAFIGMLKGENTGKAIVKV  329 (329)
T ss_pred             HHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHHHHCCCCcCC--cccccCHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            34556678888887644331  12346788899999977664  3456899999999999988765 5999864

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd08293 PTGR2 Prostaglandin reductase

Probab=100.00  E-value=6.6e-39  Score=304.36  Aligned_cols=300  Identities=19%  Similarity=0.203  Sum_probs=233.5

Q ss_pred             eEEEEeecCCCC-CCeEEEEEceeccCcccccccc---cCCCCCCCCcccccceeEEEEEecCCCCCCCCCCEEeecCCC
Q 016507           29 LVIDEVIVDPPN-SHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLA  104 (388)
Q Consensus        29 ~~~~~~~~p~~~-~~eVlVkv~~~~i~~~D~~~~~---g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~  104 (388)
                      ++++++|.|+|. ++||||||.|+|||+.|.....   +.....++|.++|||++|+|+++|+++++|++||+|+..   
T Consensus        23 ~~~~~~~~p~~~~~~evlV~v~a~gin~~d~~~~~~~~~~~~~~~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~---   99 (345)
T cd08293          23 FRVEECTLPDELNEGQVLVRTLYLSVDPYMRCRMNEDTGTDYLAPWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSF---   99 (345)
T ss_pred             eEEEeccCCCCCCCCeEEEEEEEEecCHHHHhhcccccccccCCCccCCCceEeeEEEEEeccCCCCCCCCCEEEec---
Confidence            888999999874 9999999999999999864332   211123567899999999999999999999999999631   


Q ss_pred             CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCccc----cc
Q 016507          105 DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR----AC  180 (388)
Q Consensus       105 ~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~----aa  180 (388)
                                                                      .++|+||+.++.++++++|+++++.+    ++
T Consensus       100 ------------------------------------------------~~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a  131 (345)
T cd08293         100 ------------------------------------------------NWPWQTYAVLDGSSLEKVDPQLVDGHLSYFLG  131 (345)
T ss_pred             ------------------------------------------------CCCceeEEEecHHHeEEcCccccccchhHHhh
Confidence                                                            02799999999999999999865433    45


Q ss_pred             cccchhhhhHHHHHHhcCCCCC--CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCC
Q 016507          181 LLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNC  256 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~~~--~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~  256 (388)
                      +++.++.|||+++.+.++++++  ++|||+|+ |++|++++|+|+++|+.+|+++++++++.+++++ +|+++++++++ 
T Consensus       132 ~~~~~~~ta~~al~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~-  210 (345)
T cd08293         132 AVGLPGLTALIGIQEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKT-  210 (345)
T ss_pred             hcCcHHHHHHHHHHHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCC-
Confidence            6677899999988777888877  99999997 9999999999999998679999999999998876 99999999887 


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCC-Ccc----ccC--HHHH-HhcCcEEEE
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG-SQL----SLS--SFEV-LHSGKILMG  328 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~-~~~----~~~--~~~~-~~~~~~i~g  328 (388)
                        .++.+.+++++++++|++||++|+.. +..++++++++ |+++.+|..... ...    .+.  ...+ ..+++...+
T Consensus       211 --~~~~~~i~~~~~~gvd~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (345)
T cd08293         211 --DNVAERLRELCPEGVDVYFDNVGGEI-SDTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRER  286 (345)
T ss_pred             --CCHHHHHHHHCCCCceEEEECCCcHH-HHHHHHHhccC-CEEEEEeeeecccCccCccccccchhHHHhhhcceEEEE
Confidence              67888888887668999999999976 79999999997 999999853211 111    111  1111 223444433


Q ss_pred             eeecCCC--ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          329 SLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       329 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      .....+.  ..+.++++++++.++.+.+.  +...++++++++|++.+.+++. +|+|+++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvvl~~  345 (345)
T cd08293         287 FLVLNYKDKFEEAIAQLSQWVKEGKLKVK--ETVYEGLENAGEAFQSMMNGGNIGKQIVKV  345 (345)
T ss_pred             EEeeccHhHHHHHHHHHHHHHHCCCccce--eEEeecHHHHHHHHHHHhcCCCCCeEEEEC
Confidence            3222211  12346778889999977654  4456799999999999988765 5999874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=100.00  E-value=7.8e-39  Score=301.85  Aligned_cols=323  Identities=25%  Similarity=0.356  Sum_probs=269.1

Q ss_pred             eeeeeecCCCC----CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCC
Q 016507           17 CRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        17 ~ka~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      |||+++.+++.    ++++.+.+.|.+.++||+||+.++++|++|+..+.|..+...+|.++|||++|+|+++|+++++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~irv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (329)
T cd08298           1 MKAMVLEKPGPIEENPLRLTEVPVPEPGPGEVLIKVEACGVCRTDLHIVEGDLPPPKLPLIPGHEIVGRVEAVGPGVTRF   80 (329)
T ss_pred             CeEEEEecCCCCCCCCceEEeccCCCCCCCEEEEEEEEEeccHHHHHHHhCCCCCCCCCccccccccEEEEEECCCCCCC
Confidence            68999988883    58888888888999999999999999999999988876655678899999999999999999999


Q ss_pred             CCCCEEeecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           93 VEGDVVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        93 ~vGd~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      ++||+|+..+ ..+|+.|.+|..+.+++|....+   .|+..+|                   +|++|+.++.+.++++|
T Consensus        81 ~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g-------------------~~~~~~~~~~~~~~~lp  138 (329)
T cd08298          81 SVGDRVGVPWLGSTCGECRYCRSGRENLCDNARF---TGYTVDG-------------------GYAEYMVADERFAYPIP  138 (329)
T ss_pred             cCCCEEEEeccCCCCCCChhHhCcChhhCCCccc---cccccCC-------------------ceEEEEEecchhEEECC
Confidence            9999997654 46799999999999999986654   3443344                   99999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      +++++.+++.+++++.|||+++ ..++++++++|||+|+|++|++++++++..|+ +|+++++++++.++++++|+++++
T Consensus       139 ~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g~g~vg~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  216 (329)
T cd08298         139 EDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYGFGASAHLALQIARYQGA-EVFAFTRSGEHQELARELGADWAG  216 (329)
T ss_pred             CCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEcCChHHHHHHHHhCCcEEe
Confidence            9999999999999999999987 88999999999999999999999999999999 899999999999999999998888


Q ss_pred             cCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          252 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      +.+.   .         ..+++|+++++.+....+..++++++++ |+++.+|... .....+++.. +.++..+.+...
T Consensus       217 ~~~~---~---------~~~~vD~vi~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~-~~~~~~i~~~~~  281 (329)
T cd08298         217 DSDD---L---------PPEPLDAAIIFAPVGALVPAALRAVKKG-GRVVLAGIHM-SDIPAFDYEL-LWGEKTIRSVAN  281 (329)
T ss_pred             ccCc---c---------CCCcccEEEEcCCcHHHHHHHHHHhhcC-CEEEEEcCCC-CCCCccchhh-hhCceEEEEecC
Confidence            7654   1         1237999999977766799999999997 9999988532 2222333333 345666766642


Q ss_pred             cCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEE
Q 016507          332 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  384 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv  384 (388)
                      .   ..+.++.++++++++.+.+   +.+.|+++++++|++.+++.... |+|+
T Consensus       282 ~---~~~~~~~~~~l~~~~~l~~---~~~~~~~~~~~~a~~~~~~~~~~~~~v~  329 (329)
T cd08298         282 L---TRQDGEEFLKLAAEIPIKP---EVETYPLEEANEALQDLKEGRIRGAAVL  329 (329)
T ss_pred             C---CHHHHHHHHHHHHcCCCCc---eEEEEeHHHHHHHHHHHHcCCCcceeeC
Confidence            2   2356888999999997654   35889999999999999876654 7764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=100.00  E-value=4.3e-39  Score=303.12  Aligned_cols=292  Identities=20%  Similarity=0.223  Sum_probs=237.4

Q ss_pred             eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCC
Q 016507           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTE  108 (388)
Q Consensus        29 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~  108 (388)
                      +++.++|.|+|++|||||||.|+++|+.+..   |.+.....|.++|.|++|+|+++|+   .|++||+|+..       
T Consensus        19 l~~~~~~~p~~~~~evlv~v~a~~~n~~~~~---g~~~~~~~~~i~G~~~~g~v~~~~~---~~~~GdrV~~~-------   85 (325)
T TIGR02825        19 FELKTVELPPLNNGEVLLEALFLSVDPYMRV---AAKRLKEGDTMMGQQVARVVESKNV---ALPKGTIVLAS-------   85 (325)
T ss_pred             eEEEeccCCCCCCCcEEEEEEEEecCHHHhc---ccCcCCCCCcEecceEEEEEEeCCC---CCCCCCEEEEe-------
Confidence            8889999999999999999999999997643   4333334478999999999999874   59999999631       


Q ss_pred             CccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEc----CCCCCcccc-cccc
Q 016507          109 CVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV----DPTVPPNRA-CLLS  183 (388)
Q Consensus       109 c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l----P~~~~~~~a-a~~~  183 (388)
                                                                   ++|++|+.++.+.+.++    |+++++++| ++++
T Consensus        86 ---------------------------------------------~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~  120 (325)
T TIGR02825        86 ---------------------------------------------PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVG  120 (325)
T ss_pred             ---------------------------------------------cCceeeEEechhheEEccccccCCCCHHHHHHhcc
Confidence                                                         27899999999888887    899999987 6788


Q ss_pred             chhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHH
Q 016507          184 CGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVS  262 (388)
Q Consensus       184 ~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~  262 (388)
                      +++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+++++++++  ...+.
T Consensus       121 ~~~~TA~~~l~~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~-~Vi~~~~s~~~~~~~~~lGa~~vi~~~~--~~~~~  197 (325)
T TIGR02825       121 MPGLTAYFGLLEICGVKGGETVMVNAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKVAYLKKLGFDVAFNYKT--VKSLE  197 (325)
T ss_pred             cHHHHHHHHHHHHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEeccc--cccHH
Confidence            899999998888899999999999986 9999999999999999 8999999999999999999999999875  12455


Q ss_pred             HHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCC---Cccc--cCHHHHHhcCcEEEEeeecCCC--
Q 016507          263 QIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG---SQLS--LSSFEVLHSGKILMGSLFGGLK--  335 (388)
Q Consensus       263 ~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~---~~~~--~~~~~~~~~~~~i~g~~~~~~~--  335 (388)
                      +.++..+++++|++||++|+.. +..++++++++ |+++.+|.....   ...+  .....+..+++++.++....+.  
T Consensus       198 ~~~~~~~~~gvdvv~d~~G~~~-~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  275 (325)
T TIGR02825       198 ETLKKASPDGYDCYFDNVGGEF-SNTVIGQMKKF-GRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGE  275 (325)
T ss_pred             HHHHHhCCCCeEEEEECCCHHH-HHHHHHHhCcC-cEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhh
Confidence            5566655458999999999876 79999999997 999999864311   1111  1233455678888887643322  


Q ss_pred             -ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          336 -AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       336 -~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                       ..+.++++++++.+|++.+.  +...|+++++.+|++.+++++. +|+|++
T Consensus       276 ~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gkvVv~  325 (325)
T TIGR02825       276 VRQKALKELLKWVLEGKIQYK--EYVIEGFENMPAAFMGMLKGENLGKTIVK  325 (325)
T ss_pred             hhHHHHHHHHHHHHCCCcccc--eeccccHHHHHHHHHHHhcCCCCCeEEeC
Confidence             12467889999999987665  5577899999999999988765 488874

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=2.8e-38  Score=294.90  Aligned_cols=301  Identities=27%  Similarity=0.443  Sum_probs=255.6

Q ss_pred             eeeeeecCCC-CCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++.+++ ..+++++++.|++.+++|+||+.++++|++|+....|.+.....|.++|+|++|+|+++|++++.|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~V~v~~~~l~~~d~~~~~g~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~~G   80 (306)
T cd08258           1 MKALVKTGPGPGNVELREVPEPEPGPGEVLIKVAAAGICGSDLHIYKGDYDPVETPVVLGHEFSGTIVEVGPDVEGWKVG   80 (306)
T ss_pred             CeeEEEecCCCCceEEeecCCCCCCCCeEEEEEEEEEechhhHHHHcCCCCcCCCCeeeccceEEEEEEECCCcCcCCCC
Confidence            5889988755 349999999999999999999999999999998888876444457899999999999999999999999


Q ss_pred             CEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        96 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      |+|+..+. .+|+.|.+|..+..+.|.....   +|....                   |+|++|+.++.++++++|+++
T Consensus        81 d~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~lp~~~  138 (306)
T cd08258          81 DRVVSETTFSTCGRCPYCRRGDYNLCPHRKG---IGTQAD-------------------GGFAEYVLVPEESLHELPENL  138 (306)
T ss_pred             CEEEEccCcCCCCCCcchhCcCcccCCCCce---eeecCC-------------------CceEEEEEcchHHeEECcCCC
Confidence            99988774 6799999999999999976432   232223                   499999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEc--CCchHHHHHHHcCCcEEEc
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD--VISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~--~~~~~~~~~~~lga~~v~~  252 (388)
                      ++++++ +...+++||+++.....+.++++|||.|+|.+|.+++++|+.+|+ +|+++.  +++++.++++++|++++ +
T Consensus       139 ~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g~g~~g~~~~~la~~~G~-~v~~~~~~~~~~~~~~~~~~g~~~~-~  215 (306)
T cd08258         139 SLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFGPGPIGLLAAQVAKLQGA-TVVVVGTEKDEVRLDVAKELGADAV-N  215 (306)
T ss_pred             CHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEECCCCCHHHHHHHHHhCCccc-C
Confidence            999887 666888999988888899999999998789999999999999999 787763  34557788899999888 7


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      ++.   .++.+.+.+.+.+ ++|++||++|+...+...+++++++ |+++.+|... .....+++..++.+++++.|+++
T Consensus       216 ~~~---~~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~i~g~~~  290 (306)
T cd08258         216 GGE---EDLAELVNEITDGDGADVVIECSGAVPALEQALELLRKG-GRIVQVGIFG-PLAASIDVERIIQKELSVIGSRS  290 (306)
T ss_pred             CCc---CCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcC-CEEEEEcccC-CCCcccCHHHHhhcCcEEEEEec
Confidence            766   6788888887776 8999999998766689999999997 9999999854 33467788888889999999986


Q ss_pred             cCCCccCcHHHHHHHHhCC
Q 016507          332 GGLKAKSDIPILLKRYMDK  350 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~  350 (388)
                      +.   +++++++++++++|
T Consensus       291 ~~---~~~~~~~~~~~~~~  306 (306)
T cd08258         291 ST---PASWETALRLLASG  306 (306)
T ss_pred             Cc---hHhHHHHHHHHhcC
Confidence            54   46799999998765

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=100.00  E-value=2.4e-38  Score=299.99  Aligned_cols=313  Identities=22%  Similarity=0.287  Sum_probs=259.8

Q ss_pred             eeeeeecCCCCC---eEEEEeecCCCCC-CeEEEEEceeccCcccccccccCCCCC-C----CCcccccceeEEEEEecC
Q 016507           17 CRAAIATAPGEP---LVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKMKDFPA-V----FPRILGHEAIGVVESVGE   87 (388)
Q Consensus        17 ~ka~~~~~~~~~---~~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~~~-~----~p~v~G~e~~G~Vv~vG~   87 (388)
                      |||+++.+++.+   +.+++.|.|+|.+ ++|+||+.++++|++|+..+.|..+.. .    +|.++|||++|+|+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~v~v~~~gi~~~d~~~~~g~~~~~~~~~~~~~~~~g~e~~G~V~~vG~   80 (341)
T cd08290           1 AKALVYTEHGEPKEVLQLESYEIPPPGPPNEVLVKMLAAPINPADINQIQGVYPIKPPTTPEPPAVGGNEGVGEVVKVGS   80 (341)
T ss_pred             CceEEEccCCCchhheEEeecCCCCCCCCCEEEEEEEecCCCHHHHHHhcCcCCCCCcccCCCCCCCCcceEEEEEEeCC
Confidence            799999998875   8999999999888 999999999999999999988875431 2    577999999999999999


Q ss_pred             CCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCce
Q 016507           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (388)
Q Consensus        88 ~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~  167 (388)
                      ++..|++||+|+....                                                ..|+|++|+.++.+.+
T Consensus        81 ~v~~~~~Gd~V~~~~~------------------------------------------------~~g~~~~~~~v~~~~~  112 (341)
T cd08290          81 GVKSLKPGDWVIPLRP------------------------------------------------GLGTWRTHAVVPADDL  112 (341)
T ss_pred             CCCCCCCCCEEEecCC------------------------------------------------CCccchheEeccHHHe
Confidence            9999999999974310                                                0249999999999999


Q ss_pred             EEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc----hHHHHH
Q 016507          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIG  242 (388)
Q Consensus       168 ~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~----~~~~~~  242 (388)
                      +++|+++++++++.+++.+.|||+++.....+.++++|||+|+ |++|++++++|++.|+ +|+++.+++    ++.+++
T Consensus       113 ~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~  191 (341)
T cd08290         113 IKVPNDVDPEQAATLSVNPCTAYRLLEDFVKLQPGDWVIQNGANSAVGQAVIQLAKLLGI-KTINVVRDRPDLEELKERL  191 (341)
T ss_pred             EeCCCCCCHHHHHHhhccHHHHHHHHHhhcccCCCCEEEEccchhHHHHHHHHHHHHcCC-eEEEEEcCCCcchhHHHHH
Confidence            9999999999999999999999998877778999999999987 9999999999999999 787777665    678888


Q ss_pred             HHcCCcEEEcCCCCCCc---cHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH
Q 016507          243 KRFGVTEFVNSKNCGDK---SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV  319 (388)
Q Consensus       243 ~~lga~~v~~~~~~~~~---~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~  319 (388)
                      +++|++++++.+.   .   .+.+.+.+++++++|++|||+|+.. +...+++++++ |+++.+|.... ....++...+
T Consensus       192 ~~~g~~~~~~~~~---~~~~~~~~~i~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~  265 (341)
T cd08290         192 KALGADHVLTEEE---LRSLLATELLKSAPGGRPKLALNCVGGKS-ATELARLLSPG-GTMVTYGGMSG-QPVTVPTSLL  265 (341)
T ss_pred             HhcCCCEEEeCcc---cccccHHHHHHHHcCCCceEEEECcCcHh-HHHHHHHhCCC-CEEEEEeccCC-CCcccCHHHH
Confidence            8999999998765   4   6777777776558999999999876 77899999997 99999986432 2345666566


Q ss_pred             HhcCcEEEEeeecCCCc-------cCcHHHHHHHHhCCCCCCCcceeeeE---ecchHHHHHHHHhcCce-eEEEEee
Q 016507          320 LHSGKILMGSLFGGLKA-------KSDIPILLKRYMDKELELDKFVTHEM---KFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       320 ~~~~~~i~g~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~---~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      +.++..+.+.....+..       ...++.+++++.++.+.+.  ..+.+   +++++++|++.+.++.. +|+|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~k~v~~~  341 (341)
T cd08290         266 IFKDITLRGFWLTRWLKRANPEEKEDMLEELAELIREGKLKAP--PVEKVTDDPLEEFKDALANALKGGGGGKQVLVM  341 (341)
T ss_pred             hhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHHHcCCccCC--cccccccCCHHHHHHHHHHHhhcCCCCeEEEeC
Confidence            78899999887543211       1247788899999977654  44566   99999999999887665 4999874

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=100.00  E-value=2.1e-38  Score=298.64  Aligned_cols=315  Identities=17%  Similarity=0.224  Sum_probs=257.0

Q ss_pred             ceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCC
Q 016507           16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        16 ~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      +|||+++.+++.+  +++.+++.|.++++||+||+.++++|++|+.+..|.++...+|.++|||++|+|+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (327)
T PRK10754          1 MAKRIEFHKHGGPEVLQAVEFTPADPAENEVQVENKAIGINYIDTYIRSGLYPPPSLPSGLGTEAAGVVSKVGSGVKHIK   80 (327)
T ss_pred             CceEEEEeccCChhHeEEeeccCCCCCCCEEEEEEEEEEcCHHHhhhcCCCCCCCCCCCccCcceEEEEEEeCCCCCCCC
Confidence            4899999888765  88889999999999999999999999999999888776555788999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+...                             .                   +.|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~-----------------------------~-------------------~~g~~~~~v~v~~~~~~~lp~~  112 (327)
T PRK10754         81 VGDRVVYAQ-----------------------------S-------------------ALGAYSSVHNVPADKAAILPDA  112 (327)
T ss_pred             CCCEEEECC-----------------------------C-------------------CCcceeeEEEcCHHHceeCCCC
Confidence            999996310                             0                   0149999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++++++.+++.+.|||.++.....+.+|++|+|+|+ |.+|++++++|+.+|+ +|+++++++++.++++++|++++++
T Consensus       113 ~~~~~~~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~  191 (327)
T PRK10754        113 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGSAQKAQRAKKAGAWQVIN  191 (327)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEEc
Confidence            9999999999899999998777788999999999975 9999999999999999 8999999999999999999999998


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEE--EEe
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKIL--MGS  329 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i--~g~  329 (388)
                      .+.   .++.+.+++.+++ ++|++|||+++.. ....+++++++ |+++.+|.... ....++...+..++...  ...
T Consensus       192 ~~~---~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~  265 (327)
T PRK10754        192 YRE---ENIVERVKEITGGKKVRVVYDSVGKDT-WEASLDCLQRR-GLMVSFGNASG-PVTGVNLGILNQKGSLYVTRPS  265 (327)
T ss_pred             CCC---CcHHHHHHHHcCCCCeEEEEECCcHHH-HHHHHHHhccC-CEEEEEccCCC-CCCCcCHHHHhccCceEEecce
Confidence            876   6788888888887 8999999999865 88899999997 99999997532 12233433333222211  111


Q ss_pred             eecCCCcc----CcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          330 LFGGLKAK----SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       330 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      ........    +.++.+++++.+|.+.+..++.+.|+++++.+|++.+.++.. +|+|+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  326 (327)
T PRK10754        266 LQGYITTREELTEASNELFSLIASGVIKVDVAEQQKFPLKDAQRAHEILESRATQGSSLLI  326 (327)
T ss_pred             eecccCCHHHHHHHHHHHHHHHHCCCeeeecccCcEEcHHHHHHHHHHHHcCCCcceEEEe
Confidence            00111111    234568889999988765556799999999999999887664 599986

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=100.00  E-value=1.5e-37  Score=292.37  Aligned_cols=313  Identities=20%  Similarity=0.231  Sum_probs=260.4

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC---CCCCcccccceeEEEEEecCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP---AVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~---~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      |||+++++++.+  +.+.+.+.|.+.+++|+||+.++++|++|+....|..+.   ..+|.++|||++|+|+++|++++.
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~p~~~g~e~~G~v~~~G~~v~~   80 (324)
T cd08244           1 MRAIRLHEFGPPEVLVPEDVPDPVPGPGQVRIAVAAAGVHFVDTQLRSGWGPGPFPPELPYVPGGEVAGVVDAVGPGVDP   80 (324)
T ss_pred             CeEEEEcCCCCccceEEeccCCCCCCCCEEEEEEEEEeCCHHHHHHhCCCCCCCCCCCCCcCCccceEEEEEEeCCCCCC
Confidence            689999876643  667777777889999999999999999999888776432   345788999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      +++||+|+....                            ..                   .|+|++|+.++.++++++|
T Consensus        81 ~~~Gd~V~~~~~----------------------------~~-------------------~g~~~~~~~v~~~~~~~lp  113 (324)
T cd08244          81 AWLGRRVVAHTG----------------------------RA-------------------GGGYAELAVADVDSLHPVP  113 (324)
T ss_pred             CCCCCEEEEccC----------------------------CC-------------------CceeeEEEEEchHHeEeCC
Confidence            999999975310                            01                   2499999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      +++++.+++.+++.+.|||. +.+.++++++++|||+|+ |++|++++++|+..|+ +|+++++++++.+.++++|++++
T Consensus       114 ~~~~~~~a~~~~~~~~ta~~-~~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~-~v~~~~~~~~~~~~~~~~g~~~~  191 (324)
T cd08244         114 DGLDLEAAVAVVHDGRTALG-LLDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGA-TVVGAAGGPAKTALVRALGADVA  191 (324)
T ss_pred             CCCCHHHHhhhcchHHHHHH-HHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEE
Confidence            99999999999999999964 677889999999999986 9999999999999999 89999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          251 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      ++.++   .++.+.+.+.+++ ++|+++|++|+.. ...++++++.+ |+++.+|..... ...++...++.+++.+.+.
T Consensus       192 ~~~~~---~~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~  265 (324)
T cd08244         192 VDYTR---PDWPDQVREALGGGGVTVVLDGVGGAI-GRAALALLAPG-GRFLTYGWASGE-WTALDEDDARRRGVTVVGL  265 (324)
T ss_pred             EecCC---ccHHHHHHHHcCCCCceEEEECCChHh-HHHHHHHhccC-cEEEEEecCCCC-CCccCHHHHhhCCcEEEEe
Confidence            98876   6777888887777 8999999999886 79999999997 999999875332 2355655667889998887


Q ss_pred             eecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEEee
Q 016507          330 LFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  386 (388)
Q Consensus       330 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv~~  386 (388)
                      .......   .+.++++++++.++.+.  +++++.|+++++++|++.+.++... |+|+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~~  324 (324)
T cd08244         266 LGVQAERGGLRALEARALAEAAAGRLV--PVVGQTFPLERAAEAHAALEARSTVGKVLLLP  324 (324)
T ss_pred             ecccCCHHHHHHHHHHHHHHHHCCCcc--CccceEEeHHHHHHHHHHHHcCCCCceEEEeC
Confidence            6543221   24577788899898664  3477899999999999998887654 988864

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=100.00  E-value=1e-37  Score=295.05  Aligned_cols=309  Identities=17%  Similarity=0.165  Sum_probs=248.1

Q ss_pred             eeeeecCC---CCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCC
Q 016507           18 RAAIATAP---GEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        18 ka~~~~~~---~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      ||+++..+   +.+  +++.++|.|+|+++||+|||.++++|++|+..+.|..+...+|.++|+|++|+|+++|++++.|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ev~Ikv~~~~i~~~d~~~~~g~~~~~~~~~~~g~e~~G~V~~vG~~v~~~   80 (336)
T TIGR02817         1 KAVGYKKPLPITDPDALVDIDLPKPKPGGRDLLVEVKAISVNPVDTKVRARMAPEAGQPKILGWDAAGVVVAVGDEVTLF   80 (336)
T ss_pred             CceeeccccCCCCcccceecccCCCCCCCCEEEEEEEEEEcChHHHHHHcCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            57788776   433  8888999999999999999999999999999888876545568899999999999999999999


Q ss_pred             CCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCC
Q 016507           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (388)
Q Consensus        93 ~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~  172 (388)
                      ++||+|+...                           +...                   .|+|++|+.++.+.++++|+
T Consensus        81 ~~Gd~V~~~~---------------------------~~~~-------------------~g~~~~~~~v~~~~~~~ip~  114 (336)
T TIGR02817        81 KPGDEVWYAG---------------------------DIDR-------------------PGSNAEFHLVDERIVGHKPK  114 (336)
T ss_pred             CCCCEEEEcC---------------------------CCCC-------------------CCcccceEEEcHHHcccCCC
Confidence            9999997420                           0011                   24999999999999999999


Q ss_pred             CCCccccccccchhhhhHHHHHHhcCCCC-----CCEEEEEcc-chhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHHc
Q 016507          173 TVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRF  245 (388)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~VlI~Ga-g~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~l  245 (388)
                      ++++++++.+++++.|||+++....++.+     +++|||+|+ |++|++++|+|+.+ |+ +|+++.+++++.++++++
T Consensus       115 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~-~vi~~~~~~~~~~~l~~~  193 (336)
T TIGR02817       115 SLSFAEAAALPLTSITAWELLFDRLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGL-TVIATASRPESQEWVLEL  193 (336)
T ss_pred             CCCHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCC-EEEEEcCcHHHHHHHHHc
Confidence            99999999999999999998878888877     999999986 99999999999998 99 899999999999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcE
Q 016507          246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKI  325 (388)
Q Consensus       246 ga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  325 (388)
                      |+++++++..    ++.+.+.+...+++|+++|++++.......+++++++ |+++.++..     ..++...+..++..
T Consensus       194 g~~~~~~~~~----~~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~-G~~v~~~~~-----~~~~~~~~~~~~~~  263 (336)
T TIGR02817       194 GAHHVIDHSK----PLKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQ-GRFALIDDP-----AELDISPFKRKSIS  263 (336)
T ss_pred             CCCEEEECCC----CHHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccC-CEEEEEccc-----ccccchhhhhcceE
Confidence            9999998543    4667777754348999999987666689999999997 999988532     23444444555566


Q ss_pred             EEEeeecC--CCc-------cCcHHHHHHHHhCCCCCCCcceeeeE---ecchHHHHHHHHhcCce-eEEEEe
Q 016507          326 LMGSLFGG--LKA-------KSDIPILLKRYMDKELELDKFVTHEM---KFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       326 i~g~~~~~--~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~---~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      +.+..+..  ...       ...++++++++.++.+.+  .+.+.+   +++++++|++.+.+++. +|+|++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~gkvvv~  334 (336)
T TIGR02817       264 LHWEFMFTRSMFQTADMIEQHHLLNRVARLVDAGKIRT--TLAETFGTINAANLKRAHALIESGKARGKIVLE  334 (336)
T ss_pred             EEEEEeecccccchhhhhhhHHHHHHHHHHHHCCCeec--cchhccCCCCHHHHHHHHHHHHcCCccceEEEe
Confidence            66543321  110       134788999999996653  344555   46899999999988765 488874

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-37  Score=292.37  Aligned_cols=314  Identities=22%  Similarity=0.275  Sum_probs=259.9

Q ss_pred             ceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCC
Q 016507           16 QCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        16 ~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      +|||+++.+++..  +++.+.+.|++.++||+|||.++++|+.|+....|..+. ...|.++|||++|+|+++|++++.+
T Consensus         1 ~m~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~   80 (334)
T PTZ00354          1 MMRAVTLKGFGGVDVLKIGESPKPAPKRNDVLIKVSAAGVNRADTLQRQGKYPPPPGSSEILGLEVAGYVEDVGSDVKRF   80 (334)
T ss_pred             CcEEEEEEecCCCcceEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEeCCCCCCC
Confidence            5899999988753  777788888899999999999999999999888876542 3456789999999999999999999


Q ss_pred             CCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCC
Q 016507           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (388)
Q Consensus        93 ~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~  172 (388)
                      ++||+|+...                              .                   .|+|++|+.++.++++++|+
T Consensus        81 ~~Gd~V~~~~------------------------------~-------------------~g~~~~~~~v~~~~~~~ip~  111 (334)
T PTZ00354         81 KEGDRVMALL------------------------------P-------------------GGGYAEYAVAHKGHVMHIPQ  111 (334)
T ss_pred             CCCCEEEEec------------------------------C-------------------CCceeeEEEecHHHcEeCCC
Confidence            9999996320                              1                   14999999999999999999


Q ss_pred             CCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      ++++.+++.+.+.+.|||.++.....+.++++|||+|+ |.+|++++++|+.+|+ +++.+.+++++.++++++|+++++
T Consensus       112 ~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  190 (334)
T PTZ00354        112 GYTFEEAAAIPEAFLTAWQLLKKHGDVKKGQSVLIHAGASGVGTAAAQLAEKYGA-ATIITTSSEEKVDFCKKLAAIILI  190 (334)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEE
Confidence            99999999999999999998877788999999999996 9999999999999999 777788899999999999999999


Q ss_pred             cCCCCCCcc-HHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccc-cCHHHHHhcCcEEEE
Q 016507          252 NSKNCGDKS-VSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVLHSGKILMG  328 (388)
Q Consensus       252 ~~~~~~~~~-~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~i~g  328 (388)
                      +...   .+ +.+.+.+.+++ ++|++||++++.. +..+++++.++ |+++.+|.... .... ++...++.++..+.+
T Consensus       191 ~~~~---~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~-g~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~  264 (334)
T PTZ00354        191 RYPD---EEGFAPKVKKLTGEKGVNLVLDCVGGSY-LSETAEVLAVD-GKWIVYGFMGG-AKVEKFNLLPLLRKRASIIF  264 (334)
T ss_pred             ecCC---hhHHHHHHHHHhCCCCceEEEECCchHH-HHHHHHHhccC-CeEEEEecCCC-CcccccCHHHHHhhCCEEEe
Confidence            8765   44 77788888776 8999999998765 88999999997 99999986432 2333 666667777778888


Q ss_pred             eeecCCCcc-------CcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          329 SLFGGLKAK-------SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       329 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      +........       +.++++++++.++.+.  +++.+.+++++++++++.+.+++. +|+|+++.
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~kvvv~~~  329 (334)
T PTZ00354        265 STLRSRSDEYKADLVASFEREVLPYMEEGEIK--PIVDRTYPLEEVAEAHTFLEQNKNIGKVVLTVN  329 (334)
T ss_pred             eeccccchhhhHHHHHHHHHHHHHHHHCCCcc--CccccEEcHHHHHHHHHHHHhCCCCceEEEecC
Confidence            765432110       2346778888888655  347789999999999999887664 59998764

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.3e-36  Score=287.23  Aligned_cols=330  Identities=24%  Similarity=0.317  Sum_probs=269.7

Q ss_pred             eeeeeecCCC--CCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++...+  ..+++.+.+.|.++++|++|++.++++|++|+....|.++. ..+|.++|||++|+|+++|+.+++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (336)
T cd08276           1 MKAWRLSGGGGLDNLKLVEEPVPEPGPGEVLVRVHAVSLNYRDLLILNGRYPPPVKDPLIPLSDGAGEVVAVGEGVTRFK   80 (336)
T ss_pred             CeEEEEeccCCCcceEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhcCCCCCCCCCCcccccceeEEEEEeCCCCcCCC
Confidence            7899998664  33888888888899999999999999999999988876543 34678999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+......|+.|.+|      .|....   ..|...+                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~~~~~~~~~------~~~~~~---~~~~~~~-------------------g~~~~~~~~~~~~~~~lp~~  132 (336)
T cd08276          81 VGDRVVPTFFPNWLDGPPT------AEDEAS---ALGGPID-------------------GVLAEYVVLPEEGLVRAPDH  132 (336)
T ss_pred             CCCEEEEeccccccccccc------cccccc---ccccccC-------------------ceeeeEEEecHHHeEECCCC
Confidence            9999988766555443332      332111   1232223                   39999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++.+++.+.+.+.+||+++.+...+++|++|+|+|+|++|+++++++++.|+ +|+++++++++.++++++|++++++.
T Consensus       133 ~~~~~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g~g~~g~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~~~~~~~  211 (336)
T cd08276         133 LSFEEAATLPCAGLTAWNALFGLGPLKPGDTVLVQGTGGVSLFALQFAKAAGA-RVIATSSSDEKLERAKALGADHVINY  211 (336)
T ss_pred             CCHHHhhhhhHHHHHHHHHHHhhcCCCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEcC
Confidence            99999999999999999988777889999999999889999999999999999 89999999999999999999999886


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      +.  ..++.+.+.+.+++ ++|++||+++... +..++++++++ |+++.+|..... ........++.+++.+.+....
T Consensus       212 ~~--~~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~  286 (336)
T cd08276         212 RT--TPDWGEEVLKLTGGRGVDHVVEVGGPGT-LAQSIKAVAPG-GVISLIGFLSGF-EAPVLLLPLLTKGATLRGIAVG  286 (336)
T ss_pred             Cc--ccCHHHHHHHHcCCCCCcEEEECCChHH-HHHHHHhhcCC-CEEEEEccCCCC-ccCcCHHHHhhcceEEEEEecC
Confidence            54  13577788888876 8999999998665 88999999997 999999975332 2245556677889999988754


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      .   ...++++++++.++.+.+  ...+.|++++++++++.+.++.. +|++++
T Consensus       287 ~---~~~~~~~~~l~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  335 (336)
T cd08276         287 S---RAQFEAMNRAIEAHRIRP--VIDRVFPFEEAKEAYRYLESGSHFGKVVIR  335 (336)
T ss_pred             c---HHHHHHHHHHHHcCCccc--ccCcEEeHHHHHHHHHHHHhCCCCceEEEe
Confidence            3   357888999998886543  35689999999999999887665 488875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=100.00  E-value=1.4e-36  Score=285.81  Aligned_cols=313  Identities=19%  Similarity=0.182  Sum_probs=246.1

Q ss_pred             eeeeeecCCCC--CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+++.  ++++.+.|.|.+++++|+||+.++++|++|+..+.|..+. ..+|.++|||++|+|+++  +++.|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~--~~~~~~   78 (325)
T cd05280           1 FKALVVEEQDGGVSLFLRTLPLDDLPEGDVLIRVHYSSLNYKDALAATGNGGVTRNYPHTPGIDAAGTVVSS--DDPRFR   78 (325)
T ss_pred             CceEEEcccCCCCcceEEeCCCCCCCCCeEEEEEEEeecChHHHHHhcCCCCCCCCCCCccCcccEEEEEEe--CCCCCC
Confidence            79999999885  5999999999999999999999999999999998887542 345789999999999999  467899


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+....                        ..|+..+|                   +|++|+.++.++++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~g~~~~g-------------------~~~~~~~v~~~~~~~lp~~  115 (325)
T cd05280          79 EGDEVLVTGY------------------------DLGMNTDG-------------------GFAEYVRVPADWVVPLPEG  115 (325)
T ss_pred             CCCEEEEccc------------------------ccCCCCCc-------------------eeEEEEEEchhhEEECCCC
Confidence            9999975310                        02332333                   9999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhc--CCC-CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTA--NVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~--~~~-~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +++++++.+++.+.|||.++....  ++. .+++|+|+|+ |++|++++++|+.+|+ +|+++++++++.++++++|+++
T Consensus       116 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  194 (325)
T cd05280         116 LSLREAMILGTAGFTAALSVHRLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGY-TVVALTGKEEQADYLKSLGASE  194 (325)
T ss_pred             CCHHHHHhhHHHHHHHHHHHHHHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcE
Confidence            999999999999999998775543  335 3579999997 9999999999999999 7999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEE
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  328 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  328 (388)
                      +++.++   .  ...+.+...+ ++|++||++++.. +..++++++++ |+++.+|..... ...+++..++.+++++.+
T Consensus       195 ~~~~~~---~--~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~  266 (325)
T cd05280         195 VLDRED---L--LDESKKPLLKARWAGAIDTVGGDV-LANLLKQTKYG-GVVASCGNAAGP-ELTTTVLPFILRGVSLLG  266 (325)
T ss_pred             EEcchh---H--HHHHHHHhcCCCccEEEECCchHH-HHHHHHhhcCC-CEEEEEecCCCC-ccccccchheeeeeEEEE
Confidence            988654   2  1223333333 8999999999865 99999999997 999999975322 224555555567889888


Q ss_pred             eeecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          329 SLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       329 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ........   .+.++.+.+++..+.   ...+.++|+++++++|++.+.+++. +|+|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~a~~~~~~~~~~gk~vv~~  325 (325)
T cd05280         267 IDSVNCPMELRKQVWQKLATEWKPDL---LEIVVREISLEELPEAIDRLLAGKHRGRTVVKI  325 (325)
T ss_pred             EEeecCchhHHHHHHHHHHHHHhcCC---ccceeeEecHHHHHHHHHHHhcCCcceEEEEeC
Confidence            76543221   122334444445552   2236799999999999999988765 4988864

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=100.00  E-value=1.6e-36  Score=286.12  Aligned_cols=311  Identities=24%  Similarity=0.272  Sum_probs=254.6

Q ss_pred             ceeeeeecCCCC----CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCC
Q 016507           16 QCRAAIATAPGE----PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        16 ~~ka~~~~~~~~----~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      .|||+++.+++.    ++++++++.|.+.++||+|||.++++|++|+....|.+.. ..+|.++|||++|+|+++|++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~i~v~~~gi~~~d~~~~~g~~~~~~~~p~~~g~e~~G~v~~vG~~v~   80 (329)
T cd08250           1 SFRKLVVHRLSPNFREATSIVDVPVPLPGPGEVLVKNRFVGINASDINFTAGRYDPGVKPPFDCGFEGVGEVVAVGEGVT   80 (329)
T ss_pred             CceEEEeccCCCCcccCceEEecCCCCCCCCEEEEEEEEEecCHHHHHHHhCCCCCCCCCCcccCceeEEEEEEECCCCC
Confidence            389999988765    4889999999999999999999999999999988876542 45788999999999999999999


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEc
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l  170 (388)
                      .+++||+|+..                                                  ..|+|++|+.++.+.++++
T Consensus        81 ~~~~Gd~V~~~--------------------------------------------------~~g~~~s~~~v~~~~~~~i  110 (329)
T cd08250          81 DFKVGDAVATM--------------------------------------------------SFGAFAEYQVVPARHAVPV  110 (329)
T ss_pred             CCCCCCEEEEe--------------------------------------------------cCcceeEEEEechHHeEEC
Confidence            99999999742                                                  1249999999999999999


Q ss_pred             CCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       171 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      |++  ..+++.+++.+.|||+++.+..++.++++|+|+|+ |.+|++++++|+..|+ +|+++.+++++.+.++++|+++
T Consensus       111 p~~--~~~~a~l~~~~~ta~~~l~~~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  187 (329)
T cd08250         111 PEL--KPEVLPLLVSGLTASIALEEVGEMKSGETVLVTAAAGGTGQFAVQLAKLAGC-HVIGTCSSDEKAEFLKSLGCDR  187 (329)
T ss_pred             CCC--cchhhhcccHHHHHHHHHHHhcCCCCCCEEEEEeCccHHHHHHHHHHHHcCC-eEEEEeCcHHHHHHHHHcCCce
Confidence            997  35677888899999998877788999999999986 9999999999999999 8999988899999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCC---------CccccCHHHHH
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG---------SQLSLSSFEVL  320 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~---------~~~~~~~~~~~  320 (388)
                      +++.++   ..+.+.+.+..++++|++||++|+.. +..++++++++ |+++.+|.....         ....++ ...+
T Consensus       188 v~~~~~---~~~~~~~~~~~~~~vd~v~~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~  261 (329)
T cd08250         188 PINYKT---EDLGEVLKKEYPKGVDVVYESVGGEM-FDTCVDNLALK-GRLIVIGFISGYQSGTGPSPVKGATLP-PKLL  261 (329)
T ss_pred             EEeCCC---ccHHHHHHHhcCCCCeEEEECCcHHH-HHHHHHHhccC-CeEEEEecccCCcccCccccccccccc-HHHh
Confidence            988766   56666776655448999999999754 89999999997 999999864321         111223 2345


Q ss_pred             hcCcEEEEeeecCCC--ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEEe
Q 016507          321 HSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  385 (388)
Q Consensus       321 ~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv~  385 (388)
                      .++..+.++....+.  ..+.+.++++++.++.+.+.....+.++++++++|++.+.+++.. |+|++
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~kvvv~  329 (329)
T cd08250         262 AKSASVRGFFLPHYAKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGKNIGKVVVE  329 (329)
T ss_pred             hcCceEEEEEhHHHHHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCCCCceEEeC
Confidence            678888887643321  134577888999999776644445679999999999999887654 88763

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=100.00  E-value=1.7e-36  Score=287.04  Aligned_cols=312  Identities=24%  Similarity=0.316  Sum_probs=248.1

Q ss_pred             eeeeeecCCC-CCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++++++ ..+++++++.|+|+++||+||+.++++|++|+....+.+ ...+|.++|||++|+|+++|++++.|++|
T Consensus         1 m~a~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~-~~~~~~~~g~e~~G~v~~vG~~v~~~~~G   79 (339)
T cd08249           1 QKAAVLTGPGGGLLVVVDVPVPKPGPDEVLVKVKAVALNPVDWKHQDYGF-IPSYPAILGCDFAGTVVEVGSGVTRFKVG   79 (339)
T ss_pred             CceEEeccCCCCcccccCCCCCCCCCCEEEEEEEEEEcCchheeeeeccc-ccCCCceeeeeeeEEEEEeCCCcCcCCCC
Confidence            6899999884 338889999999999999999999999999998876654 22357789999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |+|+......|+                      +...                   .|+|++|+.++.+.++++|++++
T Consensus        80 d~V~~~~~~~~~----------------------~~~~-------------------~g~~~~~~~v~~~~~~~ip~~~~  118 (339)
T cd08249          80 DRVAGFVHGGNP----------------------NDPR-------------------NGAFQEYVVADADLTAKIPDNIS  118 (339)
T ss_pred             CEEEEEeccccC----------------------CCCC-------------------CCcccceEEechhheEECCCCCC
Confidence            999865332211                      0111                   24999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCC----------CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANV----------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~----------~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      +++++.+++.+.|||+++....++          .++++|||+|+ |++|++++++|+..|+ +|+++. ++++.+++++
T Consensus       119 ~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~-~v~~~~-~~~~~~~~~~  196 (339)
T cd08249         119 FEEAATLPVGLVTAALALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGY-KVITTA-SPKNFDLVKS  196 (339)
T ss_pred             HHHceecchHHHHHHHHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCC-eEEEEE-CcccHHHHHh
Confidence            999999999999999987665544          78999999997 9999999999999999 888887 5688899999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhc--CCceEEEEccCCCCCccccCHHHHHhc
Q 016507          245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK--GWGKTIVLGVDQPGSQLSLSSFEVLHS  322 (388)
Q Consensus       245 lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~--~~G~~v~~g~~~~~~~~~~~~~~~~~~  322 (388)
                      +|++++++.++   ..+.+.+++++++++|++||++|++..+..+++++++  + |+++.+|......  .+      ..
T Consensus       197 ~g~~~v~~~~~---~~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~-g~~v~~g~~~~~~--~~------~~  264 (339)
T cd08249         197 LGADAVFDYHD---PDVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGG-GKLVSLLPVPEET--EP------RK  264 (339)
T ss_pred             cCCCEEEECCC---chHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCC-CEEEEecCCCccc--cC------CC
Confidence            99999999877   6788888887766899999999985558999999999  8 9999998643221  11      11


Q ss_pred             CcEEEEeeecCC---------CccCcHHHHHHHHhCCCCCCCcceeeeEe--cchHHHHHHHHhcCc-e-eEEEEee
Q 016507          323 GKILMGSLFGGL---------KAKSDIPILLKRYMDKELELDKFVTHEMK--FEEINSAFDLLIKGK-C-LRCVIWM  386 (388)
Q Consensus       323 ~~~i~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--l~~~~~A~~~~~~~~-~-~kvvv~~  386 (388)
                      +...........         .....++.+++++.++++.+.  ....++  ++++++|++.+.++. . +|+|+++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~~  339 (339)
T cd08249         265 GVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEEGKLKPH--PVRVVEGGLEGVQEGLDLLRKGKVSGEKLVVRL  339 (339)
T ss_pred             CceEEEEEeeeecccccccccchHHHHHHHHHHHHcCCccCC--CceecCCcHHHHHHHHHHHHCCCccceEEEEeC
Confidence            222222221111         112346778889999977765  345666  999999999998877 5 4999874

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=100.00  E-value=4.3e-36  Score=282.74  Aligned_cols=315  Identities=17%  Similarity=0.208  Sum_probs=242.6

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCC-CCCCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+++.+  +.++++|.|.+.++||+||+.++++|++|.....+.. ....+|.++|||++|+|+++|  +++|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~ev~i~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~~~--~~~~~   78 (326)
T cd08289           1 FQALVVEKDEDDVSVSVKNLTLDDLPEGDVLIRVAYSSVNYKDGLASIPGGKIVKRYPFIPGIDLAGTVVESN--DPRFK   78 (326)
T ss_pred             CeeEEEeccCCcceeEEEEccCCCCCCCeEEEEEEEEecChHHhhhhcCCccccCCCCcCcccceeEEEEEcC--CCCCC
Confidence            799999988764  8888999999999999999999999999987654321 223458899999999999964  57899


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+..+.                        .+|...+                   |+|++|+.++.++++++|++
T Consensus        79 ~Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~v~~~~~~~~p~~  115 (326)
T cd08289          79 PGDEVIVTSY------------------------DLGVSHH-------------------GGYSEYARVPAEWVVPLPKG  115 (326)
T ss_pred             CCCEEEEccc------------------------ccCCCCC-------------------CcceeEEEEcHHHeEECCCC
Confidence            9999975421                        0222223                   49999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHh--cCC-CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRT--ANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~--~~~-~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +++++++.+++.+.||+.++...  ..+ ..+++|||+|+ |++|++++++|+.+|+ +|+++++++++.++++++|+++
T Consensus       116 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~  194 (326)
T cd08289         116 LTLKEAMILGTAGFTAALSIHRLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGY-EVVASTGKADAADYLKKLGAKE  194 (326)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCC-eEEEEecCHHHHHHHHHcCCCE
Confidence            99999999999999998876433  233 34789999997 9999999999999999 8999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      +++.++   . ..+.+.++.++++|++|||+|+.. +..++++++++ |+++.+|... ....+++...++.+++.+.+.
T Consensus       195 v~~~~~---~-~~~~~~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~-G~~i~~g~~~-~~~~~~~~~~~~~~~~~~~~~  267 (326)
T cd08289         195 VIPREE---L-QEESIKPLEKQRWAGAVDPVGGKT-LAYLLSTLQYG-GSVAVSGLTG-GGEVETTVFPFILRGVNLLGI  267 (326)
T ss_pred             EEcchh---H-HHHHHHhhccCCcCEEEECCcHHH-HHHHHHHhhcC-CEEEEEeecC-CCCCCcchhhhhhccceEEEE
Confidence            998765   3 345566664448999999999854 89999999997 9999999753 233444556666789999987


Q ss_pred             eecCCCccCcHHHHHHHHhCCCCC---CCcceeeeEecchHHHHHHHHhcCcee-EEEEee
Q 016507          330 LFGGLKAKSDIPILLKRYMDKELE---LDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  386 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv~~  386 (388)
                      ...... ......+++.+.+ .+.   ....+.++|+++++.+|++.+.++... |+|+++
T Consensus       268 ~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~gkvvv~~  326 (326)
T cd08289         268 DSVECP-MELRRRIWRRLAT-DLKPTQLLNEIKQEITLDELPEALKQILQGRVTGRTVVKL  326 (326)
T ss_pred             EeEecC-chHHHHHHHHHHh-hcCccccccccceEeeHHHHHHHHHHHhcCcccceEEEeC
Confidence            532210 1122333333322 121   122457999999999999999887654 888863

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=100.00  E-value=7.1e-37  Score=285.30  Aligned_cols=302  Identities=24%  Similarity=0.378  Sum_probs=230.6

Q ss_pred             eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCC----CCCcccccceeEEEEE---ec-CCCCCCCCCCEEee
Q 016507           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA----VFPRILGHEAIGVVES---VG-ENVDGVVEGDVVIP  100 (388)
Q Consensus        29 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~----~~p~v~G~e~~G~Vv~---vG-~~v~~~~vGd~V~~  100 (388)
                      ...++.++|.|.+++++|++.+++.|+.|+.+..|.+.+.    .+|.+++.++.|.+..   +| ..+..+.+||++..
T Consensus        20 ~~~~~~~iP~~~~~~~~i~~~a~a~NpiD~~~~~g~~~~~~~~~~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~   99 (347)
T KOG1198|consen   20 LFSEEVPIPEPEDGEVLIKVVAVALNPIDLKIRNGYYSPIPLGREFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVA   99 (347)
T ss_pred             EEeecccCCCCCCCceEEEEEEeccChHHHHHHccCcCCCCCccCCCCccccccCCceeEEeccccccccceEeeeEEee
Confidence            4556899999999999999999999999999999988653    4676666666555333   33 22233555555532


Q ss_pred             cCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCccccc
Q 016507          101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRAC  180 (388)
Q Consensus       101 ~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa  180 (388)
                                                    ...                   .|+|+||+++|...++++|+++++++||
T Consensus       100 ------------------------------~~~-------------------~g~~aey~v~p~~~~~~~P~~l~~~~aa  130 (347)
T KOG1198|consen  100 ------------------------------FLS-------------------SGGLAEYVVVPEKLLVKIPESLSFEEAA  130 (347)
T ss_pred             ------------------------------ccC-------------------CCceeeEEEcchhhccCCCCccChhhhh
Confidence                                          112                   2499999999999999999999999999


Q ss_pred             cccchhhhhHHHHHHhc------CCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          181 LLSCGVSTGVGAAWRTA------NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~------~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++.++.|||.+++...      ++++|++|||+|+ |++|++++|+|++.++ ..+++.+++++.++++++|+++++|+
T Consensus       131 ~~p~~~~tA~~al~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~-~~v~t~~s~e~~~l~k~lGAd~vvdy  209 (347)
T KOG1198|consen  131 ALPLAALTALSALFQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGA-IKVVTACSKEKLELVKKLGADEVVDY  209 (347)
T ss_pred             cCchHHHHHHHHHHhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCC-cEEEEEcccchHHHHHHcCCcEeecC
Confidence            99999999999999999      8999999999976 9999999999999996 45555578999999999999999999


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHH--hcCcEEEEeee
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL--HSGKILMGSLF  331 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~--~~~~~i~g~~~  331 (388)
                      ++   +++.+.+.+.+.++||+||||+|+.. ....+.++..+ |+...++... +.....+....+  .+.+.+.....
T Consensus       210 ~~---~~~~e~~kk~~~~~~DvVlD~vg~~~-~~~~~~~l~~~-g~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  283 (347)
T KOG1198|consen  210 KD---ENVVELIKKYTGKGVDVVLDCVGGST-LTKSLSCLLKG-GGGAYIGLVG-DELANYKLDDLWQSANGIKLYSLGL  283 (347)
T ss_pred             CC---HHHHHHHHhhcCCCccEEEECCCCCc-cccchhhhccC-CceEEEEecc-ccccccccccchhhhhhhhheeeee
Confidence            99   89999999988449999999999976 77888888886 8766555422 111111111000  11111111110


Q ss_pred             c--------CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeCC
Q 016507          332 G--------GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       332 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                      .        .....+.++.+.++++++  .+.+.+.+.||++++.+|++.+.++.. +|+++.+++
T Consensus       284 ~~~~~~~~~~~~~~~~l~~l~~~ie~g--kikp~i~~~~p~~~~~ea~~~~~~~~~~GK~vl~~~~  347 (347)
T KOG1198|consen  284 KGVNYRWLYFVPSAEYLKALVELIEKG--KIKPVIDSVYPFSQAKEAFEKLEKSHATGKVVLEKDV  347 (347)
T ss_pred             eccceeeeeecCCHHHHHHHHHHHHcC--cccCCcceeeeHHHHHHHHHHHhhcCCcceEEEEecC
Confidence            0        112356788999999999  455559999999999999999988554 699998764

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=100.00  E-value=1e-35  Score=278.37  Aligned_cols=303  Identities=24%  Similarity=0.368  Sum_probs=248.1

Q ss_pred             cCCCCCeEEEEeecCCCCCCeEEEEEceeccCccccccc-ccCCCC--CCCCcccccceeEEEEEecCCCCCCCCCCEEe
Q 016507           23 TAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW-KMKDFP--AVFPRILGHEAIGVVESVGENVDGVVEGDVVI   99 (388)
Q Consensus        23 ~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~-~g~~~~--~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~   99 (388)
                      ++++. +++.+++.|++.++||+||+.++++|++|+..+ .|..+.  +.+|.++|+|++|+|+++|++++.+++||+|+
T Consensus         2 ~~~~~-~~~~~~~~~~l~~~ev~v~v~~~~i~~~d~~~~~~g~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~   80 (312)
T cd08269           2 TGPGR-FEVEEHPRPTPGPGQVLVRVEGCGVCGSDLPAFNQGRPWFVYPAEPGGPGHEGWGRVVALGPGVRGLAVGDRVA   80 (312)
T ss_pred             CCCCe-eEEEECCCCCCCCCeEEEEEEEeeecccchHHHccCCCCcccCCCCcccceeeEEEEEEECCCCcCCCCCCEEE
Confidence            34554 999999999999999999999999999999887 665422  23478999999999999999999999999997


Q ss_pred             ecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCcccc
Q 016507          100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA  179 (388)
Q Consensus       100 ~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~a  179 (388)
                      ...                                                  .|+|++|+.++.+.++++|+++  ..+
T Consensus        81 ~~~--------------------------------------------------~g~~~~~~~v~~~~~~~lP~~~--~~~  108 (312)
T cd08269          81 GLS--------------------------------------------------GGAFAEYDLADADHAVPLPSLL--DGQ  108 (312)
T ss_pred             Eec--------------------------------------------------CCcceeeEEEchhheEECCCch--hhh
Confidence            421                                                  2499999999999999999998  223


Q ss_pred             ccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCc
Q 016507          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~  259 (388)
                      +....+++++++++. ..+++++++|||+|+|.+|.+++++|+.+|++.|+++.+++++.++++++|++++++.+.   .
T Consensus       109 ~~~~~~~~~a~~~~~-~~~~~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~  184 (312)
T cd08269         109 AFPGEPLGCALNVFR-RGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDS---E  184 (312)
T ss_pred             HHhhhhHHHHHHHHH-hcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCC---c
Confidence            222267788888664 788999999999988999999999999999943999998999999999999999998766   6


Q ss_pred             cHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC-Ccc
Q 016507          260 SVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL-KAK  337 (388)
Q Consensus       260 ~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~-~~~  337 (388)
                      .+.+.+.+++.+ ++|++|||+|+......++++++++ |+++.+|... .....+++..+..+++.+.++..... ...
T Consensus       185 ~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~-g~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (312)
T cd08269         185 AIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAER-GRLVIFGYHQ-DGPRPVPFQTWNWKGIDLINAVERDPRIGL  262 (312)
T ss_pred             CHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEccCC-CCCcccCHHHHhhcCCEEEEecccCccchh
Confidence            788888888877 9999999998877689999999997 9999998643 33445565566667888777643322 123


Q ss_pred             CcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce--eEEEE
Q 016507          338 SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVI  384 (388)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~--~kvvv  384 (388)
                      +.++++++++.++.+.+...+.+.|+++++.+|++.+.++..  +|+++
T Consensus       263 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  311 (312)
T cd08269         263 EGMREAVKLIADGRLDLGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI  311 (312)
T ss_pred             hHHHHHHHHHHcCCCCchhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence            578899999999987765556788999999999999988753  58876

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=100.00  E-value=7.3e-36  Score=280.67  Aligned_cols=299  Identities=20%  Similarity=0.252  Sum_probs=253.0

Q ss_pred             eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCCCCCEEeecCCCCCC
Q 016507           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCT  107 (388)
Q Consensus        29 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~  107 (388)
                      +++++.|.|++.+++|+||+.++++|+.|+.++.+.... ..+|.++|||++|+|+++|++++.+++||+|+..+.    
T Consensus        14 ~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~----   89 (323)
T cd05282          14 LELVSLPIPPPGPGEVLVRMLAAPINPSDLITISGAYGSRPPLPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGG----   89 (323)
T ss_pred             EEeEeCCCCCCCCCeEEEEEEeccCCHHHHHHhcCcCCCCCCCCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCC----
Confidence            667788888999999999999999999999988776532 345789999999999999999999999999974310    


Q ss_pred             CCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCccccccccchhh
Q 016507          108 ECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS  187 (388)
Q Consensus       108 ~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~  187 (388)
                                                                   .|+|++|+.++...++++|+++++.+++.+++.+.
T Consensus        90 ---------------------------------------------~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~  124 (323)
T cd05282          90 ---------------------------------------------EGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPL  124 (323)
T ss_pred             ---------------------------------------------CCcceeEEecCHHHeEECCCCCCHHHHHHHhccHH
Confidence                                                         14999999999999999999999999999999999


Q ss_pred             hhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHH
Q 016507          188 TGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       188 ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~  266 (388)
                      +||.++.....+.++++|||+|+ |.+|++++++|+.+|+ +|+++.+++++.+.++++|++++++.++   ..+.+.+.
T Consensus       125 ta~~~~~~~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~  200 (323)
T cd05282         125 TAWLMLTEYLKLPPGDWVIQNAANSAVGRMLIQLAKLLGF-KTINVVRRDEQVEELKALGADEVIDSSP---EDLAQRVK  200 (323)
T ss_pred             HHHHHHHHhccCCCCCEEEEcccccHHHHHHHHHHHHCCC-eEEEEecChHHHHHHHhcCCCEEecccc---hhHHHHHH
Confidence            99998877778899999999987 9999999999999999 8899988999999999999999999876   56788888


Q ss_pred             hhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCc-------cC
Q 016507          267 DMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA-------KS  338 (388)
Q Consensus       267 ~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~-------~~  338 (388)
                      +.+++ ++|++|||+|+.. ....+++++++ |+++.+|..... ...++...+..++..+.+..+..+..       .+
T Consensus       201 ~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (323)
T cd05282         201 EATGGAGARLALDAVGGES-ATRLARSLRPG-GTLVNYGLLSGE-PVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQE  277 (323)
T ss_pred             HHhcCCCceEEEECCCCHH-HHHHHHhhCCC-CEEEEEccCCCC-CCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHH
Confidence            88877 9999999999977 77889999997 999999875433 44566666555799999887655421       13


Q ss_pred             cHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          339 DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      .++++++++.++.+.+  .+.+.|+++++.+|++.+.++.. +|+|++
T Consensus       278 ~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~~  323 (323)
T cd05282         278 TFAEVIKLVEAGVLTT--PVGAKFPLEDFEEAVAAAEQPGRGGKVLLT  323 (323)
T ss_pred             HHHHHHHHHhCCCccc--CccceecHHHHHHHHHHHhcCCCCceEeeC
Confidence            5777888998997654  36789999999999999987665 488764

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=1.2e-35  Score=278.56  Aligned_cols=312  Identities=23%  Similarity=0.325  Sum_probs=249.9

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      ||++++..++.+  +.+.+.+.|.+.++||+||+.++++|++|+....|..+...+|.++|||++|+|+++|+  ..+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~vG~--~~~~~   78 (320)
T cd08243           1 MKAIVIEQPGGPEVLKLREIPIPEPKPGWVLIRVKAFGLNRSEIFTRQGHSPSVKFPRVLGIEAVGEVEEAPG--GTFTP   78 (320)
T ss_pred             CeEEEEcCCCCccceEEeecCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCccccceeEEEEEEecC--CCCCC
Confidence            688999877643  66778888888999999999999999999998888765556688999999999999995  57999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||+|+....                        .+|...+                   |+|++|+.++..+++++|+++
T Consensus        79 Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~~~~~~~~~ip~~~  115 (320)
T cd08243          79 GQRVATAMG------------------------GMGRTFD-------------------GSYAEYTLVPNEQVYAIDSDL  115 (320)
T ss_pred             CCEEEEecC------------------------CCCCCCC-------------------cccceEEEcCHHHcEeCCCCC
Confidence            999975421                        0111122                   499999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      ++++++.+++++.|||.++.+...+.+|++|||+|+ |++|++++++|+.+|+ +|+++.+++++.+.++++|++++++.
T Consensus       116 ~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  194 (320)
T cd08243         116 SWAELAALPETYYTAWGSLFRSLGLQPGDTLLIRGGTSSVGLAALKLAKALGA-TVTATTRSPERAALLKELGADEVVID  194 (320)
T ss_pred             CHHHHHhcchHHHHHHHHHHHhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCcEEEec
Confidence            999999999999999998888788999999999997 9999999999999999 89999999999999999999888754


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCcc-ccCHHHH--HhcCcEEEEee
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEV--LHSGKILMGSL  330 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~-~~~~~~~--~~~~~~i~g~~  330 (388)
                       .   .++.+.++++ ++++|+++||+++.. +..++++++++ |+++.+|........ .......  +.+++.+.+..
T Consensus       195 -~---~~~~~~i~~~-~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (320)
T cd08243         195 -D---GAIAEQLRAA-PGGFDKVLELVGTAT-LKDSLRHLRPG-GIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSS  267 (320)
T ss_pred             -C---ccHHHHHHHh-CCCceEEEECCChHH-HHHHHHHhccC-CEEEEEccCCCCcccCCcchhhhhhhccceEEEecc
Confidence             3   4677778877 449999999999865 89999999997 999999864322111 1122222  24567776664


Q ss_pred             ecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          331 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                      ..... ...++++++++.++.+.+  ++.+.|+++++++|++.+.++.. +|+|+
T Consensus       268 ~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~a~~~~~~~~~~~kvvv  319 (320)
T cd08243         268 SGDVP-QTPLQELFDFVAAGHLDI--PPSKVFTFDEIVEAHAYMESNRAFGKVVV  319 (320)
T ss_pred             hhhhh-HHHHHHHHHHHHCCceec--ccccEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            32221 235788999999996654  36789999999999999987665 47775

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=100.00  E-value=3.2e-35  Score=276.45  Aligned_cols=311  Identities=18%  Similarity=0.198  Sum_probs=244.7

Q ss_pred             eeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCCC
Q 016507           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        18 ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      ||+++...+.|  ++++++|+|.+++++|+||+.++++|++|+..+.|.++. ..+|.++|||++|+|++  ++++.|++
T Consensus         1 ~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~~   78 (323)
T TIGR02823         1 KALVVEKEDGKVSAQVETLDLSDLPEGDVLIKVAYSSLNYKDALAITGKGGVVRSYPMIPGIDAAGTVVS--SEDPRFRE   78 (323)
T ss_pred             CeEEEccCCCCcceeEeecCCCCCCCCeEEEEEEEEEcCHHHHHHHcCCCCCCCCCCccceeeeEEEEEe--cCCCCCCC
Confidence            67888777664  788999999999999999999999999999988887532 34588999999999998  56778999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||+|+....                        .+|...+                   |+|++|+.++.+.++++|+++
T Consensus        79 Gd~V~~~~~------------------------~~~~~~~-------------------g~~~~~~~~~~~~~~~iP~~~  115 (323)
T TIGR02823        79 GDEVIVTGY------------------------GLGVSHD-------------------GGYSQYARVPADWLVPLPEGL  115 (323)
T ss_pred             CCEEEEccC------------------------CCCCCCC-------------------ccceEEEEEchhheEECCCCC
Confidence            999975421                        0222223                   399999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHh--cCCCCCC-EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          175 PPNRACLLSCGVSTGVGAAWRT--ANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~-~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      ++.+++.+++.+.+|+.++...  +.+.+++ +|||+|+ |.+|++++++|+.+|+ +++++..++++.+.++++|++++
T Consensus       116 ~~~~aa~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~-~vi~~~~~~~~~~~~~~~g~~~~  194 (323)
T TIGR02823       116 SLREAMALGTAGFTAALSVMALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGY-EVVASTGKAEEEDYLKELGASEV  194 (323)
T ss_pred             CHHHhhhhhhhHHHHHHHHHHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHhcCCcEE
Confidence            9999999999999998765332  3478898 9999997 9999999999999999 78888788888899999999999


Q ss_pred             EcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      ++.++   ...  .++.+..+++|+++||+|+.. +..++++++++ |+++.+|... .....++...++.+++++.+..
T Consensus       195 ~~~~~---~~~--~~~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~  266 (323)
T TIGR02823       195 IDRED---LSP--PGKPLEKERWAGAVDTVGGHT-LANVLAQLKYG-GAVAACGLAG-GPDLPTTVLPFILRGVSLLGID  266 (323)
T ss_pred             Ecccc---HHH--HHHHhcCCCceEEEECccHHH-HHHHHHHhCCC-CEEEEEcccC-CCCccccHHHHhhcceEEEEEe
Confidence            88654   222  445555557999999999875 89999999997 9999999753 2334445455667889988875


Q ss_pred             ecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEEe
Q 016507          331 FGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIW  385 (388)
Q Consensus       331 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv~  385 (388)
                      ......   .+.++.+.+++..+.+..  + .+.|+++++++|++.+.++... |+|++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~l~~~~~a~~~~~~~~~~~k~vv~  322 (323)
T TIGR02823       267 SVYCPMALREAAWQRLATDLKPRNLES--I-TREITLEELPEALEQILAGQHRGRTVVD  322 (323)
T ss_pred             ccccCchhHHHHHHHHHHHhhcCCCcC--c-eeeecHHHHHHHHHHHhCCCccceEEEe
Confidence            432211   112445666666775432  3 4689999999999999887654 88875

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.3e-35  Score=276.75  Aligned_cols=298  Identities=21%  Similarity=0.285  Sum_probs=243.3

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      ||++++.+++ |  +++.+.|.|.+.++||+||+.++++|++|++...+.    ..|.++|||++|+|+++|++++.|++
T Consensus         1 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~ev~v~v~~~~i~~~d~~~~~~~----~~~~~~g~e~~G~v~~~G~~v~~~~~   75 (305)
T cd08270           1 MRALVVDPDA-PLRLRLGEVPDPQPAPHEALVRVAAISLNRGELKFAAER----PDGAVPGWDAAGVVERAAADGSGPAV   75 (305)
T ss_pred             CeEEEEccCC-CceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHhhccC----CCCCcccceeEEEEEEeCCCCCCCCC
Confidence            6899998754 3  777789999999999999999999999999876522    23678999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||+|+...                              .                   .|+|++|+.++.++++++|+++
T Consensus        76 Gd~V~~~~------------------------------~-------------------~g~~~~~~~v~~~~~~~ip~~~  106 (305)
T cd08270          76 GARVVGLG------------------------------A-------------------MGAWAELVAVPTGWLAVLPDGV  106 (305)
T ss_pred             CCEEEEec------------------------------C-------------------CcceeeEEEEchHHeEECCCCC
Confidence            99996320                              1                   2499999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      ++++++++++.+.|||+++...... ++++|+|+|+ |++|.+++++++..|+ +|+++++++++.+.++++|++.+++.
T Consensus       107 ~~~~a~~~~~~~~ta~~~~~~~~~~-~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~  184 (305)
T cd08270         107 SFAQAATLPVAGVTALRALRRGGPL-LGRRVLVTGASGGVGRFAVQLAALAGA-HVVAVVGSPARAEGLRELGAAEVVVG  184 (305)
T ss_pred             CHHHHHHhHhHHHHHHHHHHHhCCC-CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEec
Confidence            9999999999999999987655544 5999999987 9999999999999999 89999999999999999998766543


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHh--cCcEEEEeee
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH--SGKILMGSLF  331 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~--~~~~i~g~~~  331 (388)
                      ..           ++.++++|+++|++|+.. +..++++++.+ |+++.+|... .....++...+..  ++..+.++.+
T Consensus       185 ~~-----------~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  250 (305)
T cd08270         185 GS-----------ELSGAPVDLVVDSVGGPQ-LARALELLAPG-GTVVSVGSSS-GEPAVFNPAAFVGGGGGRRLYTFFL  250 (305)
T ss_pred             cc-----------cccCCCceEEEECCCcHH-HHHHHHHhcCC-CEEEEEeccC-CCcccccHHHHhcccccceEEEEEc
Confidence            22           122247999999999875 89999999997 9999998753 3334455555544  5888888765


Q ss_pred             cC-CCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          332 GG-LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       332 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      .. ....+.++.+++++.++++.+.  +.++++++++++|++.+.++.. +|+|+.+
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~a~~~~~~~~~~gkvvi~~  305 (305)
T cd08270         251 YDGEPLAADLARLLGLVAAGRLDPR--IGWRGSWTEIDEAAEALLARRFRGKAVLDV  305 (305)
T ss_pred             cCHHHHHHHHHHHHHHHHCCCccce--eccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            43 1113467889999999977643  6789999999999999987765 4988864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=100.00  E-value=4.1e-35  Score=277.24  Aligned_cols=313  Identities=19%  Similarity=0.155  Sum_probs=251.6

Q ss_pred             eeeeeecCCCCC-----eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCC
Q 016507           17 CRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        17 ~ka~~~~~~~~~-----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      |||+++.+++.+     +...++|.|++.+++|+||+.++++|++|+..+.+..+...+|.++|||++|+|+++|++++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~   80 (336)
T cd08252           1 MKAIGFTQPLPITDPDSLIDIELPKPVPGGRDLLVRVEAVSVNPVDTKVRAGGAPVPGQPKILGWDASGVVEAVGSEVTL   80 (336)
T ss_pred             CceEEecCCCCCCcccceeEccCCCCCCCCCEEEEEEEEEEcCHHHHHHHcCCCCCCCCCcccccceEEEEEEcCCCCCC
Confidence            589999998864     555678888889999999999999999999888776543446778999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      |++||+|.....                           ...+                   |+|++|+.++.++++++|
T Consensus        81 ~~~Gd~V~~~~~---------------------------~~~~-------------------g~~~~~~~v~~~~~~~ip  114 (336)
T cd08252          81 FKVGDEVYYAGD---------------------------ITRP-------------------GSNAEYQLVDERIVGHKP  114 (336)
T ss_pred             CCCCCEEEEcCC---------------------------CCCC-------------------ccceEEEEEchHHeeeCC
Confidence            999999974210                           0112                   499999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCC-----CCEEEEEcc-chhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHH
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEV-----GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~-----~~~VlI~Ga-g~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~  244 (388)
                      +++++++++.+++.+.|||.++.+.+.+.+     +++|+|+|+ |++|++++++|+.+| + +|+++++++++.+++++
T Consensus       115 ~~~~~~~~~~~~~~~~ta~~~l~~~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~-~v~~~~~~~~~~~~~~~  193 (336)
T cd08252         115 KSLSFAEAAALPLTSLTAWEALFDRLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGL-TVIATASRPESIAWVKE  193 (336)
T ss_pred             CCCCHHHhhhhhhHHHHHHHHHHHhcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCc-EEEEEcCChhhHHHHHh
Confidence            999999999999999999998877788887     999999986 999999999999999 7 89999999999999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCc
Q 016507          245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  324 (388)
Q Consensus       245 lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  324 (388)
                      +|++++++.+.    .+.+.+.....+++|++||+++....+..++++++.+ |+++.+|...    ..++...+..++.
T Consensus       194 ~g~~~~~~~~~----~~~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~v~~g~~~----~~~~~~~~~~~~~  264 (336)
T cd08252         194 LGADHVINHHQ----DLAEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQ-GHICLIVDPQ----EPLDLGPLKSKSA  264 (336)
T ss_pred             cCCcEEEeCCc----cHHHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCC-CEEEEecCCC----Ccccchhhhcccc
Confidence            99999998653    3555665443338999999999766689999999997 9999998632    3344445546788


Q ss_pred             EEEEeeecCCC---------ccCcHHHHHHHHhCCCCCCCcc-eeeeEecchHHHHHHHHhcCcee-EEEEe
Q 016507          325 ILMGSLFGGLK---------AKSDIPILLKRYMDKELELDKF-VTHEMKFEEINSAFDLLIKGKCL-RCVIW  385 (388)
Q Consensus       325 ~i~g~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-i~~~~~l~~~~~A~~~~~~~~~~-kvvv~  385 (388)
                      .+.+..+....         ..+.++++++++.++.+.+... ..+.++++++.+|++.+.++... |++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vv~~  336 (336)
T cd08252         265 SFHWEFMFTRSMFQTPDMIEQHEILNEVADLLDAGKLKTTLTETLGPINAENLREAHALLESGKTIGKIVLE  336 (336)
T ss_pred             eEEEEEeeccccccccchhhHHHHHHHHHHHHHCCCEecceeeeecCCCHHHHHHHHHHHHcCCccceEEeC
Confidence            88876543211         0134778899999997664311 12457999999999999887654 88764

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=100.00  E-value=2.6e-34  Score=269.22  Aligned_cols=310  Identities=22%  Similarity=0.294  Sum_probs=256.1

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+++.+  +++.+.+.|.+.+++|+||+.++++|++|+....|.++. ..+|.++|||++|+|+++|++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (323)
T cd05276           1 MKAIVIKEPGGPEVLELGEVPKPAPGPGEVLIRVAAAGVNRADLLQRQGLYPPPPGASDILGLEVAGVVVAVGPGVTGWK   80 (323)
T ss_pred             CeEEEEecCCCcccceEEecCCCCCCCCEEEEEEEEeecCHHHHHHhCCCCCCCCCCCCcccceeEEEEEeeCCCCCCCC
Confidence            799999886543  777788888889999999999999999999888776532 34678999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+...                              .                   .|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~------------------------------~-------------------~g~~~~~~~~~~~~~~~~p~~  111 (323)
T cd05276          81 VGDRVCALL------------------------------A-------------------GGGYAEYVVVPAGQLLPVPEG  111 (323)
T ss_pred             CCCEEEEec------------------------------C-------------------CCceeEEEEcCHHHhccCCCC
Confidence            999997421                              1                   149999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++.+++.++..+.++|.++.+...+.++++|+|+|+ |++|++++++++..|+ +|+++.+++++.+.++.+|++.+++
T Consensus       112 ~~~~~~~~l~~~~~~a~~~~~~~~~~~~~~~vlv~g~~~~ig~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  190 (323)
T cd05276         112 LSLVEAAALPEVFFTAWQNLFQLGGLKAGETVLIHGGASGVGTAAIQLAKALGA-RVIATAGSEEKLEACRALGADVAIN  190 (323)
T ss_pred             CCHHHHhhchhHHHHHHHHHHHhcCCCCCCEEEEEcCcChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEe
Confidence            9999999999999999998877788999999999997 9999999999999999 8999999889999998899988888


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      ...   .++.+.+.+.+.+ ++|++||++|+.. +...++++.++ |+++.+|.... ....++...++.+++.+.++..
T Consensus       191 ~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~~~~~-g~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  264 (323)
T cd05276         191 YRT---EDFAEEVKEATGGRGVDVILDMVGGDY-LARNLRALAPD-GRLVLIGLLGG-AKAELDLAPLLRKRLTLTGSTL  264 (323)
T ss_pred             CCc---hhHHHHHHHHhCCCCeEEEEECCchHH-HHHHHHhhccC-CEEEEEecCCC-CCCCCchHHHHHhCCeEEEeec
Confidence            776   6677778777766 8999999999877 88899999997 99999986432 2234555566678899988865


Q ss_pred             cCCCc-------cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          332 GGLKA-------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       332 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                      .....       ...+.++++++.++++.+  +.++.|+++++++|++.+.++.. +|+++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  323 (323)
T cd05276         265 RSRSLEEKAALAAAFREHVWPLFASGRIRP--VIDKVFPLEEAAEAHRRMESNEHIGKIVL  323 (323)
T ss_pred             cchhhhccHHHHHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            44211       123566778888886643  46789999999999999887654 37663

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=100.00  E-value=3.9e-34  Score=268.39  Aligned_cols=316  Identities=24%  Similarity=0.310  Sum_probs=256.7

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      ||++++..++.+  +.+.++|.|.+.+++|+|++.++++|++|+....|.... ..+|.++|||++|+|+++|+++++|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~   80 (325)
T cd08253           1 MRAIRYHEFGAPDVLRLGDLPVPTPGPGEVLVRVHASGVNPVDTYIRAGAYPGLPPLPYVPGSDGAGVVEAVGEGVDGLK   80 (325)
T ss_pred             CceEEEcccCCcccceeeecCCCCCCCCEEEEEEEEEecChhHhhhccCCCCCCCCCCeecccceEEEEEeeCCCCCCCC
Confidence            688888776543  888899999999999999999999999999988776542 45688999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+..+..                        .+ ..                   .|++++|+.++.+.++++|++
T Consensus        81 ~Gd~v~~~~~~------------------------~~-~~-------------------~g~~~~~~~~~~~~~~~ip~~  116 (325)
T cd08253          81 VGDRVWLTNLG------------------------WG-RR-------------------QGTAAEYVVVPADQLVPLPDG  116 (325)
T ss_pred             CCCEEEEeccc------------------------cC-CC-------------------CcceeeEEEecHHHcEeCCCC
Confidence            99999754210                        00 01                   249999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++.+++.+++++.+||+++....++.++++|+|+|+ |++|++++++++..|+ +|+++++++++.+.+.++|++++++
T Consensus       117 ~~~~~aa~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  195 (325)
T cd08253         117 VSFEQGAALGIPALTAYRALFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGA-RVIATASSAEGAELVRQAGADAVFN  195 (325)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEe
Confidence            9999999999999999998877789999999999986 9999999999999999 8999999999999999999999988


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      ...   .++.+.+.+.+.+ ++|++++|+++.. ....+++++.+ |+++.+|...  ....+++..++.++..+.+...
T Consensus       196 ~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  268 (325)
T cd08253         196 YRA---EDLADRILAATAGQGVDVIIEVLANVN-LAKDLDVLAPG-GRIVVYGSGG--LRGTIPINPLMAKEASIRGVLL  268 (325)
T ss_pred             CCC---cCHHHHHHHHcCCCceEEEEECCchHH-HHHHHHhhCCC-CEEEEEeecC--CcCCCChhHHHhcCceEEeeeh
Confidence            776   6677778777766 8999999999876 78889999997 9999998743  2334555555667777777653


Q ss_pred             cCCC---ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          332 GGLK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       332 ~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ....   ..+.++.+.+++.++.+.  ...++.|++++++++++.+.++.. +|+++++
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  325 (325)
T cd08253         269 YTATPEERAAAAEAIAAGLADGALR--PVIAREYPLEEAAAAHEAVESGGAIGKVVLDP  325 (325)
T ss_pred             hhcCHHHHHHHHHHHHHHHHCCCcc--CccccEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            3211   112355566777777554  346789999999999999987665 4888753

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=6.1e-34  Score=266.35  Aligned_cols=310  Identities=23%  Similarity=0.285  Sum_probs=253.8

Q ss_pred             eeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        18 ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      ||+.+..++.+  +.+.+.+.|.+.+++|+|+|.++++|++|+....+..+. .+|.++|||++|+|+.+|+++++|++|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~~~~~~-~~~~~~g~e~~G~v~~~g~~~~~~~~G   79 (320)
T cd05286           1 KAVRIHKTGGPEVLEYEDVPVPEPGPGEVLVRNTAIGVNFIDTYFRSGLYPL-PLPFVLGVEGAGVVEAVGPGVTGFKVG   79 (320)
T ss_pred             CeEEEecCCCccceEEeecCCCCCCCCEEEEEEEEeecCHHHHHHhcCCCCC-CCCccCCcceeEEEEEECCCCCCCCCC
Confidence            46666655543  666677777789999999999999999999988876543 457789999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |+|+...                              .                   .|+|++|+.++.+.++++|++++
T Consensus        80 ~~V~~~~------------------------------~-------------------~g~~~~~~~~~~~~~~~~p~~~~  110 (320)
T cd05286          80 DRVAYAG------------------------------P-------------------PGAYAEYRVVPASRLVKLPDGIS  110 (320)
T ss_pred             CEEEEec------------------------------C-------------------CCceeEEEEecHHHceeCCCCCC
Confidence            9997421                              0                   24899999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ..+++.+++.+.+++.++.+..++.++++|||+|+ |++|++++++++.+|+ +|+++++++++.++++++|++++++..
T Consensus       111 ~~~~~~~~~~~~~a~~~l~~~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~  189 (320)
T cd05286         111 DETAAALLLQGLTAHYLLRETYPVKPGDTVLVHAAAGGVGLLLTQWAKALGA-TVIGTVSSEEKAELARAAGADHVINYR  189 (320)
T ss_pred             HHHHhhccchHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHCCCCEEEeCC
Confidence            99999999999999998877888999999999996 9999999999999999 899999999999999999999998877


Q ss_pred             CCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          255 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      +   ..+.+.+.+++.+ ++|++|+|+++.. ...++++++++ |+++.+|..... ...++...+..+++.+.+..+..
T Consensus       190 ~---~~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  263 (320)
T cd05286         190 D---EDFVERVREITGGRGVDVVYDGVGKDT-FEGSLDSLRPR-GTLVSFGNASGP-VPPFDLLRLSKGSLFLTRPSLFH  263 (320)
T ss_pred             c---hhHHHHHHHHcCCCCeeEEEECCCcHh-HHHHHHhhccC-cEEEEEecCCCC-CCccCHHHHHhcCcEEEEEehhh
Confidence            6   6777888888776 8999999999864 88999999997 999999864322 23345545547788887654333


Q ss_pred             CCc-----cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          334 LKA-----KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       334 ~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      +..     .+.+.++++++.++.+.+.  ..+.|+++++.+|++.+.++.. +|+|+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~~~~~~~~~vv~~~  320 (320)
T cd05286         264 YIATREELLARAAELFDAVASGKLKVE--IGKRYPLADAAQAHRDLESRKTTGKLLLIP  320 (320)
T ss_pred             hcCCHHHHHHHHHHHHHHHHCCCCcCc--ccceEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            221     1235568888888866543  6688999999999999987765 4888763

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=100.00  E-value=8.5e-34  Score=266.86  Aligned_cols=313  Identities=16%  Similarity=0.160  Sum_probs=245.9

Q ss_pred             eeeeeecCCCC--CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+++.  .++++++|.|+|+++||+||+.++++|++|+....|.... ..+|.++|||++|+|++  ++++.++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~p~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~V~~--~~~~~~~   78 (324)
T cd08288           1 FKALVLEKDDGGTSAELRELDESDLPEGDVTVEVHYSTLNYKDGLAITGKGGIVRTFPLVPGIDLAGTVVE--SSSPRFK   78 (324)
T ss_pred             CeeEEEeccCCCcceEEEECCCCCCCCCeEEEEEEEEecCHHHHHHhcCCccccCCCCCccccceEEEEEe--CCCCCCC
Confidence            78999998875  3888999999999999999999999999999988776532 34578899999999999  7778899


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+....              .          .|...                   .|+|++|+.++.+.++++|++
T Consensus        79 ~Gd~V~~~~~--------------~----------~~~~~-------------------~g~~~~~~~v~~~~~~~lp~~  115 (324)
T cd08288          79 PGDRVVLTGW--------------G----------VGERH-------------------WGGYAQRARVKADWLVPLPEG  115 (324)
T ss_pred             CCCEEEECCc--------------c----------CCCCC-------------------CCcceeEEEEchHHeeeCCCC
Confidence            9999975310              0          11111                   249999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHH--HhcCCC-CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          174 VPPNRACLLSCGVSTGVGAAW--RTANVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~--~~~~~~-~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +++++++.+++.+++|+.++.  +..... ++++|||+|+ |++|++++|+|+.+|+ +|++++.++++.++++++|+++
T Consensus       116 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~-~vi~~~~~~~~~~~~~~~g~~~  194 (324)
T cd08288         116 LSARQAMAIGTAGFTAMLCVMALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGY-EVVASTGRPEEADYLRSLGASE  194 (324)
T ss_pred             CCHHHHhhhhhHHHHHHHHHHHHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCE
Confidence            999999999999999887643  224455 5789999997 9999999999999999 8999888999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      ++++++   .  ...++.++.+++|.++|++++.. +...+..++.+ |+++.+|... .....+++..++.++.++.+.
T Consensus       195 ~~~~~~---~--~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~-g~~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~  266 (324)
T cd08288         195 IIDRAE---L--SEPGRPLQKERWAGAVDTVGGHT-LANVLAQTRYG-GAVAACGLAG-GADLPTTVMPFILRGVTLLGI  266 (324)
T ss_pred             EEEcch---h--hHhhhhhccCcccEEEECCcHHH-HHHHHHHhcCC-CEEEEEEecC-CCCCCcchhhhhccccEEEEE
Confidence            998765   2  22455565557999999999854 77888889986 9999999753 223334555555779999987


Q ss_pred             eecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEEee
Q 016507          330 LFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWM  386 (388)
Q Consensus       330 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv~~  386 (388)
                      .......   .+.++.+++++.++.+.+   +.+.++++++++|++.+.+++.. |+|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~a~~~~~~~~~~~~vvv~~  324 (324)
T cd08288         267 DSVMAPIERRRAAWARLARDLDPALLEA---LTREIPLADVPDAAEAILAGQVRGRVVVDV  324 (324)
T ss_pred             EeecccchhhHHHHHHHHHHHhcCCccc---cceeecHHHHHHHHHHHhcCCccCeEEEeC
Confidence            6433221   224556667777775543   36899999999999998877654 888763

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=100.00  E-value=1.6e-34  Score=274.86  Aligned_cols=310  Identities=21%  Similarity=0.251  Sum_probs=239.7

Q ss_pred             eeeeeecCCCCC---eEEEEeecCCC-CCCeEEEEEceeccCcccccccccCCC---------------CCCCCcccccc
Q 016507           17 CRAAIATAPGEP---LVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF---------------PAVFPRILGHE   77 (388)
Q Consensus        17 ~ka~~~~~~~~~---~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---------------~~~~p~v~G~e   77 (388)
                      |||+++.+++++   +++++++.|+| +++||+||+.++++|++|+....|...               ...+|.++|||
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~p~~~~~~ev~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~G~e   80 (350)
T cd08248           1 MKAWQIHSYGGIDSLLLLENARIPVIRKPNQVLIKVHAASVNPIDVLMRSGYGRTLLNKKRKPQSCKYSGIEFPLTLGRD   80 (350)
T ss_pred             CceEEecccCCCcceeeecccCCCCCCCCCeEEEEEEEEecCchhHHHHcCCccchhhhhhccccccccCCCCCeeecce
Confidence            789999888875   88899999999 499999999999999999998877421               23558899999


Q ss_pred             eeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccccccee
Q 016507           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS  157 (388)
Q Consensus        78 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a  157 (388)
                      ++|+|+++|+++++|++||+|+..+..                                              +..|+|+
T Consensus        81 ~~G~v~~vG~~v~~~~~Gd~V~~~~~~----------------------------------------------~~~g~~~  114 (350)
T cd08248          81 CSGVVVDIGSGVKSFEIGDEVWGAVPP----------------------------------------------WSQGTHA  114 (350)
T ss_pred             eEEEEEecCCCcccCCCCCEEEEecCC----------------------------------------------CCCccce
Confidence            999999999999999999999753210                                              0124999


Q ss_pred             eeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCC----CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE
Q 016507          158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV----GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (388)
Q Consensus       158 ~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~----~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~  232 (388)
                      +|+.++.++++++|+++++.+++.+++.+.|||+++.....+.+    |++|+|+|+ |++|++++++|+.+|+ +|+++
T Consensus       115 ~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~-~v~~~  193 (350)
T cd08248         115 EYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALVNVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGA-HVTTT  193 (350)
T ss_pred             eEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHHHhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEE
Confidence            99999999999999999999999999999999998766666654    999999996 9999999999999999 78887


Q ss_pred             cCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCc-
Q 016507          233 DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ-  311 (388)
Q Consensus       233 ~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-  311 (388)
                      .++ ++.+.++.+|++++++..+   ..+.+.+...  +++|++||++|+.. ...++++++++ |+++.+|....... 
T Consensus       194 ~~~-~~~~~~~~~g~~~~~~~~~---~~~~~~l~~~--~~vd~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~  265 (350)
T cd08248         194 CST-DAIPLVKSLGADDVIDYNN---EDFEEELTER--GKFDVILDTVGGDT-EKWALKLLKKG-GTYVTLVSPLLKNTD  265 (350)
T ss_pred             eCc-chHHHHHHhCCceEEECCC---hhHHHHHHhc--CCCCEEEECCChHH-HHHHHHHhccC-CEEEEecCCcccccc
Confidence            654 6778888999998988765   4555554432  38999999999884 89999999997 99999985421111 


Q ss_pred             -cccC---H---HHHHh-------cCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcC
Q 016507          312 -LSLS---S---FEVLH-------SGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  377 (388)
Q Consensus       312 -~~~~---~---~~~~~-------~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~  377 (388)
                       ..+.   .   ..+..       +...+....  .....+.+.++++++.++.+.  .++++.|+++++.+|++.+.++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~a~~~~~~~  341 (350)
T cd08248         266 KLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGF--FSPSGSALDELAKLVEDGKIK--PVIDKVFPFEEVPEAYEKVESG  341 (350)
T ss_pred             cccccchhhhhHHHHHHHHHHHHhcCCCeeEEE--ECCCHHHHHHHHHHHhCCCEe--cccceeecHHHHHHHHHHHhcC
Confidence             1110   0   01111       111111000  111235688899999999654  3477999999999999998876


Q ss_pred             ce-eEEEEe
Q 016507          378 KC-LRCVIW  385 (388)
Q Consensus       378 ~~-~kvvv~  385 (388)
                      .. +|++++
T Consensus       342 ~~~~~vv~~  350 (350)
T cd08248         342 HARGKTVIK  350 (350)
T ss_pred             CCceEEEeC
Confidence            64 487763

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=7.6e-34  Score=266.80  Aligned_cols=311  Identities=22%  Similarity=0.258  Sum_probs=253.0

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC-CCCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+++.+  +++++.+.|.+.+++|+|++.++++|++|+.+..+... ....|.++|||++|+|+++|+++..|+
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (326)
T cd08272           1 MKALVLESFGGPEVFELREVPRPQPGPGQVLVRVHASGVNPLDTKIRRGGAAARPPLPAILGCDVAGVVEAVGEGVTRFR   80 (326)
T ss_pred             CeEEEEccCCCchheEEeecCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceeEEEEEeCCCCCCCC
Confidence            699999888765  77888888888999999999999999999988877643 233577899999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+....                          |+..                  ..|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~--------------------------~~~~------------------~~g~~~~~~~v~~~~~~~~p~~  116 (326)
T cd08272          81 VGDEVYGCAG--------------------------GLGG------------------LQGSLAEYAVVDARLLALKPAN  116 (326)
T ss_pred             CCCEEEEccC--------------------------CcCC------------------CCCceeEEEEecHHHcccCCCC
Confidence            9999974310                          0000                  0248999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++.+++.+++.+.+||+++.+..++.++++++|+|+ |.+|++++++++.+|+ +|+++.++ ++.++++.+|++.+++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~  194 (326)
T cd08272         117 LSMREAAALPLVGITAWEGLVDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGA-RVYATASS-EKAAFARSLGADPIIY  194 (326)
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCC-EEEEEech-HHHHHHHHcCCCEEEe
Confidence            9999999999999999998878889999999999986 9999999999999999 88888887 8889999999998888


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      ...   . +.+.+.+.+.+ ++|+++||+++.. ...++++++++ |+++.+|...     ..++.....+++.+.+..+
T Consensus       195 ~~~---~-~~~~~~~~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~-g~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~  263 (326)
T cd08272         195 YRE---T-VVEYVAEHTGGRGFDVVFDTVGGET-LDASFEAVALY-GRVVSILGGA-----THDLAPLSFRNATYSGVFT  263 (326)
T ss_pred             cch---h-HHHHHHHhcCCCCCcEEEECCChHH-HHHHHHHhccC-CEEEEEecCC-----ccchhhHhhhcceEEEEEc
Confidence            766   5 77888888877 8999999999865 88899999996 9999998642     1222223356787777653


Q ss_pred             cC--C------CccCcHHHHHHHHhCCCCCCCccee-eeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          332 GG--L------KAKSDIPILLKRYMDKELELDKFVT-HEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       332 ~~--~------~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..  .      ...+.+..+++++.++.+.  ++++ +.|++++++++++.+.++.. +|+++++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~  326 (326)
T cd08272         264 LLPLLTGEGRAHHGEILREAARLVERGQLR--PLLDPRTFPLEEAAAAHARLESGSARGKIVIDV  326 (326)
T ss_pred             ccccccccchhhHHHHHHHHHHHHHCCCcc--cccccceecHHHHHHHHHHHHcCCcccEEEEEC
Confidence            32  1      0123577788888888654  3444 88999999999999887654 4888764

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=5e-34  Score=268.14  Aligned_cols=310  Identities=24%  Similarity=0.329  Sum_probs=248.0

Q ss_pred             eeeeeecCCC--CCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           17 CRAAIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        17 ~ka~~~~~~~--~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      |||+++.+++  +.+.+.++|.|++.+++|+||+.++++|++|+....+......+|.++|||++|+|+.+|++++.+++
T Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~~   80 (325)
T cd08271           1 MKAWVLPKPGAALQLTLEEIEIPGPGAGEVLVKVHAAGLNPVDWKVIAWGPPAWSYPHVPGVDGAGVVVAVGAKVTGWKV   80 (325)
T ss_pred             CeeEEEccCCCcceeEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCcccccceEEEEEEeCCCCCcCCC
Confidence            7999999998  35999999999999999999999999999999888776543334778999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||+|+....                           +..                   .|+|++|+.++.+.++++|+++
T Consensus        81 Gd~V~~~~~---------------------------~~~-------------------~~~~~s~~~~~~~~~~~ip~~~  114 (325)
T cd08271          81 GDRVAYHAS---------------------------LAR-------------------GGSFAEYTVVDARAVLPLPDSL  114 (325)
T ss_pred             CCEEEeccC---------------------------CCC-------------------CccceeEEEeCHHHeEECCCCC
Confidence            999975311                           111                   2399999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +..+++.+.+.+.+|+.++.+.+.+.+|++|+|+|+ |.+|++++++++..|+ +|+++. ++++.+.+..+|++.+++.
T Consensus       115 ~~~~~a~~~~~~~~a~~~~~~~~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~-~v~~~~-~~~~~~~~~~~g~~~~~~~  192 (325)
T cd08271         115 SFEEAAALPCAGLTAYQALFKKLRIEAGRTILITGGAGGVGSFAVQLAKRAGL-RVITTC-SKRNFEYVKSLGADHVIDY  192 (325)
T ss_pred             CHHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEE-cHHHHHHHHHcCCcEEecC
Confidence            999999999999999998878888999999999998 8999999999999999 787776 6777888888999999987


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      ..   ..+.+.+.+.+.+ ++|++++|+++.. ....++++++. |+++.++..... .   ... .+.+++.+....+.
T Consensus       193 ~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-G~~v~~~~~~~~-~---~~~-~~~~~~~~~~~~~~  262 (325)
T cd08271         193 ND---EDVCERIKEITGGRGVDAVLDTVGGET-AAALAPTLAFN-GHLVCIQGRPDA-S---PDP-PFTRALSVHEVALG  262 (325)
T ss_pred             CC---ccHHHHHHHHcCCCCCcEEEECCCcHh-HHHHHHhhccC-CEEEEEcCCCCC-c---chh-HHhhcceEEEEEec
Confidence            76   6677788888776 8999999999876 67789999997 999999753221 1   111 12233333332221


Q ss_pred             CC----------CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          333 GL----------KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       333 ~~----------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..          ...+.+.++++++.++.+.+  +..+.|+++++.+|++.+.++.. +|+++++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~~~~~~~~~~a~~~~~~~~~~~kiv~~~  325 (325)
T cd08271         263 AAHDHGDPAAWQDLRYAGEELLELLAAGKLEP--LVIEVLPFEQLPEALRALKDRHTRGKIVVTI  325 (325)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHCCCeee--ccceEEcHHHHHHHHHHHHcCCccceEEEEC
Confidence            11          11123567888888886543  35688999999999999987665 4888763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=100.00  E-value=6.8e-34  Score=248.91  Aligned_cols=299  Identities=21%  Similarity=0.218  Sum_probs=244.4

Q ss_pred             eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEe--cCCCCCCCCCCEEeecCCCCC
Q 016507           29 LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESV--GENVDGVVEGDVVIPHFLADC  106 (388)
Q Consensus        29 ~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~v--G~~v~~~~vGd~V~~~~~~~~  106 (388)
                      |+++++++|+|+.||||||+.|.++.|.....+.- .+..-.|.-+|-..+|.++..  -|..++|++||.|+..     
T Consensus        27 F~lee~~vp~p~~GqvLl~~~ylS~DPymRgrm~d-~~SY~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~-----  100 (340)
T COG2130          27 FRLEEVDVPEPGEGQVLLRTLYLSLDPYMRGRMSD-APSYAPPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGV-----  100 (340)
T ss_pred             ceeEeccCCCCCcCceEEEEEEeccCHHHeecccC-CcccCCCcCCCceeECCeeEEEEecCCCCCCCCCEEEec-----
Confidence            99999999999999999999999999965433322 223334677777777655543  3567789999999742     


Q ss_pred             CCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCc--cccccccc
Q 016507          107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP--NRACLLSC  184 (388)
Q Consensus       107 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~--~~aa~~~~  184 (388)
                                                                     .+|++|..++.+.+.|++++.-+  .....+..
T Consensus       101 -----------------------------------------------~GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGm  133 (340)
T COG2130         101 -----------------------------------------------SGWQEYAISDGEGLRKLDPSPAPLSAYLGVLGM  133 (340)
T ss_pred             -----------------------------------------------ccceEEEeechhhceecCCCCCCcchHHhhcCC
Confidence                                                           29999999999999999865322  22234667


Q ss_pred             hhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHH
Q 016507          185 GVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVS  262 (388)
Q Consensus       185 ~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~  262 (388)
                      +..|||.+|...+..++|++|+|.|| |++|..+.|+||..|+ +|+++..+++|.+++.+ +|.|.++|++.   +++.
T Consensus       134 pG~TAY~gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~-rVVGiaGg~eK~~~l~~~lGfD~~idyk~---~d~~  209 (340)
T COG2130         134 PGLTAYFGLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGC-RVVGIAGGAEKCDFLTEELGFDAGIDYKA---EDFA  209 (340)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCC-eEEEecCCHHHHHHHHHhcCCceeeecCc---ccHH
Confidence            88999999999999999999999987 9999999999999999 99999999999999998 99999999999   8999


Q ss_pred             HHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCC--CCC---ccccCHHHHHhcCcEEEEeeec-CCCc
Q 016507          263 QIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ--PGS---QLSLSSFEVLHSGKILMGSLFG-GLKA  336 (388)
Q Consensus       263 ~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~--~~~---~~~~~~~~~~~~~~~i~g~~~~-~~~~  336 (388)
                      +.+.+..+.|.|+.||++|++. ++..+..|+.. ++++.+|...  +..   .-+-.+..++.+.+++.|+.+. .+..
T Consensus       210 ~~L~~a~P~GIDvyfeNVGg~v-~DAv~~~ln~~-aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~  287 (340)
T COG2130         210 QALKEACPKGIDVYFENVGGEV-LDAVLPLLNLF-ARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQ  287 (340)
T ss_pred             HHHHHHCCCCeEEEEEcCCchH-HHHHHHhhccc-cceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhh
Confidence            9999999889999999999998 99999999996 9999999642  111   1233445667789999999883 3321


Q ss_pred             --cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEEeeCC
Q 016507          337 --KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVIWMGE  388 (388)
Q Consensus       337 --~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv~~~~  388 (388)
                        .+..+++..++++|++..+.  +-+-+||.+++||.-|.+++.+ |.|+++.+
T Consensus       288 ~~~e~~~~l~~wv~~GKi~~~e--ti~dGlEnaP~Af~gLl~G~N~GK~vvKv~~  340 (340)
T COG2130         288 RFPEALRELGGWVKEGKIQYRE--TIVDGLENAPEAFIGLLSGKNFGKLVVKVAD  340 (340)
T ss_pred             hhHHHHHHHHHHHHcCceeeEe--eehhhhhccHHHHHHHhcCCccceEEEEecC
Confidence              24577899999999888773  4445799999999999998875 99999864

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=100.00  E-value=2.7e-33  Score=266.55  Aligned_cols=316  Identities=18%  Similarity=0.220  Sum_probs=235.1

Q ss_pred             eeeeecCCCCCeEEEEeecCCC---CCCeEEEEEceeccCcccccccccCCCCCC-CCcccccceeEEEEEecCCCC-CC
Q 016507           18 RAAIATAPGEPLVIDEVIVDPP---NSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRILGHEAIGVVESVGENVD-GV   92 (388)
Q Consensus        18 ka~~~~~~~~~~~~~~~~~p~~---~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~-~p~v~G~e~~G~Vv~vG~~v~-~~   92 (388)
                      |++++.+++.++++++++.|.|   ++++|+||+.++++|++|+..+.+...... +|.++|+|++|+|+++|++++ .|
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~I~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~V~~vG~~v~~~~   81 (352)
T cd08247           2 KALTFKNNTSPLTITTIKLPLPNCYKDNEIVVKVHAAALNPVDLKLYNSYTFHFKVKEKGLGRDYSGVIVKVGSNVASEW   81 (352)
T ss_pred             ceEEEecCCCcceeeccCCCCCCCCCCCeEEEEEEEEecChHhHHHhcccccccccCCCccCceeEEEEEEeCcccccCC
Confidence            6899999988888887777766   899999999999999999987765332222 377899999999999999998 89


Q ss_pred             CCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC----ceE
Q 016507           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA----HVV  168 (388)
Q Consensus        93 ~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~----~~~  168 (388)
                      ++||+|+......|                       +  .                   .|+|++|+.++..    .++
T Consensus        82 ~~Gd~V~~~~~~~~-----------------------~--~-------------------~g~~~~~~~v~~~~~~~~~~  117 (352)
T cd08247          82 KVGDEVCGIYPHPY-----------------------G--G-------------------QGTLSQYLLVDPKKDKKSIT  117 (352)
T ss_pred             CCCCEEEEeecCCC-----------------------C--C-------------------CceeeEEEEEccccccceeE
Confidence            99999975422110                       0  1                   2499999999987    799


Q ss_pred             EcCCCCCccccccccchhhhhHHHHHHhc-CCCCCCEEEEEcc-chhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHc
Q 016507          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF  245 (388)
Q Consensus       169 ~lP~~~~~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~l  245 (388)
                      ++|+++++.+++.+++.+.|||+++.... .+++|++|+|+|+ |.+|++++++|+.+|. +.|+++. ++++.+.++++
T Consensus       118 ~lP~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~~~~~v~~~~-~~~~~~~~~~~  196 (352)
T cd08247         118 RKPENISLEEAAAWPLVLGTAYQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTC-SSRSAELNKKL  196 (352)
T ss_pred             ECCCCCCHHHHHHhHHHHHHHHHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcCCcceEEEEe-ChhHHHHHHHh
Confidence            99999999999999999999999876666 7999999999987 8999999999998754 3577775 45556678889


Q ss_pred             CCcEEEcCCCCCCcc---HHHHHHhhcC-C-CccEEEEccCCHHHHHHHHHHhh---cCCceEEEEccCCCCC--ccc--
Q 016507          246 GVTEFVNSKNCGDKS---VSQIIIDMTD-G-GADYCFECVGLASLVQEAYACCR---KGWGKTIVLGVDQPGS--QLS--  313 (388)
Q Consensus       246 ga~~v~~~~~~~~~~---~~~~i~~~~~-g-~~dvvid~~g~~~~~~~~~~~l~---~~~G~~v~~g~~~~~~--~~~--  313 (388)
                      |++++++.++   .+   +...+.+.+. + ++|++|||+|+......++++++   ++ |+++.++......  ...  
T Consensus       197 g~~~~i~~~~---~~~~~~~~~~~~~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~-G~~v~~~~~~~~~~~~~~~~  272 (352)
T cd08247         197 GADHFIDYDA---HSGVKLLKPVLENVKGQGKFDLILDCVGGYDLFPHINSILKPKSKN-GHYVTIVGDYKANYKKDTFN  272 (352)
T ss_pred             CCCEEEecCC---CcccchHHHHHHhhcCCCCceEEEECCCCHHHHHHHHHHhCccCCC-CEEEEEeCCCcccccchhhh
Confidence            9999998766   33   4444444433 4 89999999999655889999999   97 9999875322110  000  


Q ss_pred             ------cCHHHHH----hcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEE
Q 016507          314 ------LSSFEVL----HSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRC  382 (388)
Q Consensus       314 ------~~~~~~~----~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kv  382 (388)
                            +....+.    .+...+.......  ..+.++++++++.++.+.  +++++.++++++++|++.+.++.. +|+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~--~~~~~~~~l~~~~~a~~~~~~~~~~gkv  348 (352)
T cd08247         273 SWDNPSANARKLFGSLGLWSYNYQFFLLDP--NADWIEKCAELIADGKVK--PPIDSVYPFEDYKEAFERLKSNRAKGKV  348 (352)
T ss_pred             hccccchhhhhhhhhhcCCCcceEEEEecC--CHHHHHHHHHHHhCCCeE--eeeccEecHHHHHHHHHHHHcCCCCCcE
Confidence                  0111111    1122222111111  124578899999999654  446789999999999999987765 488


Q ss_pred             EEee
Q 016507          383 VIWM  386 (388)
Q Consensus       383 vv~~  386 (388)
                      ++++
T Consensus       349 vi~~  352 (352)
T cd08247         349 VIKV  352 (352)
T ss_pred             EEeC
Confidence            8753

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=100.00  E-value=1.8e-33  Score=265.19  Aligned_cols=306  Identities=21%  Similarity=0.219  Sum_probs=242.6

Q ss_pred             eeeeeecCCCC------CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC---CCCCCcccccceeEEEEEecC
Q 016507           17 CRAAIATAPGE------PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGE   87 (388)
Q Consensus        17 ~ka~~~~~~~~------~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~v~G~e~~G~Vv~vG~   87 (388)
                      .||+++...++      .++++++|.|++.+++|+||+.++++|+.|.....+...   +...+.++|+|++|+|+++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~Vkv~~~~i~~~~~~~~~~~~~~~~~~~~~~~~g~e~~G~V~~~G~   81 (329)
T cd05288           2 NRQVVLAKRPEGPPPPDDFELVEVPLPELKDGEVLVRTLYLSVDPYMRGWMSDAKSYSPPVQLGEPMRGGGVGEVVESRS   81 (329)
T ss_pred             CcEEEEeccCCCCCCccceeEEeccCCCCCCCeEEEEEEEEecCHHHhhhhccCcccCCCccCCCcccCceEEEEEecCC
Confidence            46777755431      288899999999999999999999999987655444321   112346789999999999996


Q ss_pred             CCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec-Cc
Q 016507           88 NVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AH  166 (388)
Q Consensus        88 ~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~-~~  166 (388)
                      +  +|++||+|+..                                                    ++|++|+.++. +.
T Consensus        82 ~--~~~~Gd~V~~~----------------------------------------------------~~~~~~~~v~~~~~  107 (329)
T cd05288          82 P--DFKVGDLVSGF----------------------------------------------------LGWQEYAVVDGASG  107 (329)
T ss_pred             C--CCCCCCEEecc----------------------------------------------------cceEEEEEecchhh
Confidence            5  79999999631                                                    28999999999 99


Q ss_pred             eEEcCCCCC--cccccc-ccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH
Q 016507          167 VVKVDPTVP--PNRACL-LSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (388)
Q Consensus       167 ~~~lP~~~~--~~~aa~-~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~  242 (388)
                      ++++|++++  +.+++. +++.+.|||+++.+...+.++++|||+|+ |++|++++++|+..|+ +|+++++++++.+++
T Consensus       108 ~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~-~vi~~~~~~~~~~~~  186 (329)
T cd05288         108 LRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIGKPKPGETVVVSAAAGAVGSVVGQIAKLLGA-RVVGIAGSDEKCRWL  186 (329)
T ss_pred             cEECCcccCCCHHHHHHhcccHHHHHHHHHHhccCCCCCCEEEEecCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            999999995  445555 88899999998877788999999999985 9999999999999999 899999999999999


Q ss_pred             HH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCcc----ccCHH
Q 016507          243 KR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL----SLSSF  317 (388)
Q Consensus       243 ~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~----~~~~~  317 (388)
                      ++ +|++++++.++   .++.+.+.+++++++|++|||+|+.. +..++++++++ |+++.+|........    .++..
T Consensus       187 ~~~~g~~~~~~~~~---~~~~~~v~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~  261 (329)
T cd05288         187 VEELGFDAAINYKT---PDLAEALKEAAPDGIDVYFDNVGGEI-LDAALTLLNKG-GRIALCGAISQYNATEPPGPKNLG  261 (329)
T ss_pred             HhhcCCceEEecCC---hhHHHHHHHhccCCceEEEEcchHHH-HHHHHHhcCCC-ceEEEEeeccCcccccccccccHH
Confidence            88 99999998876   66778888777558999999999865 89999999997 999999864322211    13345


Q ss_pred             HHHhcCcEEEEeeecCCCc--cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          318 EVLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       318 ~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                      .++.++..+.+..+..+..  .+.+.++++++.++.+.+.  ....++++++.++++.+.++.. +|+|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~--~~~~~~l~~~~~a~~~~~~~~~~gkvvv  329 (329)
T cd05288         262 NIITKRLTMQGFIVSDYADRFPEALAELAKWLAEGKLKYR--EDVVEGLENAPEAFLGLFTGKNTGKLVV  329 (329)
T ss_pred             HHhhCcceEEeecchhhHHHHHHHHHHHHHHHHCCCcccc--ccccccHHHHHHHHHHHhcCCCccceeC
Confidence            5667788888876433211  2356778899999977655  3355899999999999887655 37763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=1.5e-33  Score=265.96  Aligned_cols=307  Identities=25%  Similarity=0.313  Sum_probs=240.4

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      .||+++...+.+  +++.+.+.|.|.+++|+|++.++++|++|+.++.|..+. ..+|.++|||++|+|+++|++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~vG~~v~~~~   80 (331)
T cd08273           1 NREVVVTRRGGPEVLKVVEADLPEPAAGEVVVKVEASGVSFADVQMRRGLYPDQPPLPFTPGYDLVGRVDALGSGVTGFE   80 (331)
T ss_pred             CeeEEEccCCCcccEEEeccCCCCCCCCeEEEEEEEEecCHHHHHHhCCCCCCCCCCCcccccceEEEEEEeCCCCccCC
Confidence            378899887754  888889999999999999999999999999988876543 35688999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|.....                                                 .|+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~-------------------------------------------------~g~~~~~~~~~~~~~~~~p~~  111 (331)
T cd08273          81 VGDRVAALTR-------------------------------------------------VGGNAEYINLDAKYLVPVPEG  111 (331)
T ss_pred             CCCEEEEeCC-------------------------------------------------CcceeeEEEechHHeEECCCC
Confidence            9999974210                                                 138999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++.+++.+++.+.+||+++.....+.++++|+|+|+ |++|++++++|+..|+ +|+++.. +++.++++++|+.. ++
T Consensus       112 ~~~~~a~~~~~~~~ta~~~l~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~-~v~~~~~-~~~~~~~~~~g~~~-~~  188 (331)
T cd08273         112 VDAAEAVCLVLNYVTAYQMLHRAAKVLTGQRVLIHGASGGVGQALLELALLAGA-EVYGTAS-ERNHAALRELGATP-ID  188 (331)
T ss_pred             CCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEeC-HHHHHHHHHcCCeE-Ec
Confidence            9999999999999999998877788999999999997 9999999999999999 8888887 88888888899764 44


Q ss_pred             CCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccC--H------------HH
Q 016507          253 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS--S------------FE  318 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~--~------------~~  318 (388)
                      ...   .++.+.  +...+++|+++||+++.. ...++++++.+ |+++.+|.........+.  .            ..
T Consensus       189 ~~~---~~~~~~--~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (331)
T cd08273         189 YRT---KDWLPA--MLTPGGVDVVFDGVGGES-YEESYAALAPG-GTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLL  261 (331)
T ss_pred             CCC---cchhhh--hccCCCceEEEECCchHH-HHHHHHHhcCC-CEEEEEccCCCCCCccccccchhhhhhhhhhhcce
Confidence            443   334333  333348999999999987 89999999997 999999865322221111  1            01


Q ss_pred             HHhcCcEEEEeeecCC----CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          319 VLHSGKILMGSLFGGL----KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       319 ~~~~~~~i~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                      ...++..+.+......    ...+.++++++++.++.+.  +++.+.|+++++++|++.+.++.. +|+|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~a~~~~~~~~~~gkvv~  330 (331)
T cd08273         262 PTGRRATFYYVWRDRAEDPKLFRQDLTELLDLLAKGKIR--PKIAKRLPLSEVAEAHRLLESGKVVGKIVL  330 (331)
T ss_pred             eccceeEEEeechhcccCHHHHHHHHHHHHHHHHCCCcc--CCcceEEcHHHHHHHHHHHHcCCCcceEEe
Confidence            1122233333221100    0124677899999999664  447789999999999999887665 47765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=9e-33  Score=259.60  Aligned_cols=316  Identities=26%  Similarity=0.325  Sum_probs=254.1

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++...+.+  +.+.+.+.|.+.+++++|+|.++++|++|+....+.... ..+|.++|||++|+|+.+|+++..|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~~~   80 (328)
T cd08268           1 MRAVRFHQFGGPEVLRIEELPVPAPGAGEVLIRVEAIGLNRADAMFRRGAYIEPPPLPARLGYEAAGVVEAVGAGVTGFA   80 (328)
T ss_pred             CeEEEEeccCCcceeEEeecCCCCCCCCeEEEEEEEEecChHHhheeccccCCCCCCCCCCCcceEEEEEeeCCCCCcCC
Confidence            688888876543  777788888889999999999999999999888776532 34577899999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+..+..                         ++...                   |+|++|+.++.+.++++|++
T Consensus        81 ~Gd~V~~~~~~-------------------------~~~~~-------------------g~~~~~~~~~~~~~~~~p~~  116 (328)
T cd08268          81 VGDRVSVIPAA-------------------------DLGQY-------------------GTYAEYALVPAAAVVKLPDG  116 (328)
T ss_pred             CCCEEEecccc-------------------------ccCCC-------------------ccceEEEEechHhcEeCCCC
Confidence            99999753210                         11112                   49999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++.+++.+++.+.+||.++.....+.++++|+|+|+ |.+|++++++++..|+ +++.+++++++.+.++.+|++.+++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  195 (328)
T cd08268         117 LSFVEAAALWMQYLTAYGALVELAGLRPGDSVLITAASSSVGLAAIQIANAAGA-TVIATTRTSEKRDALLALGAAHVIV  195 (328)
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEe
Confidence            9999999999999999998877888999999999987 9999999999999999 8999988899999888899988888


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      .+.   ..+.+.+.+.+.+ ++|++++++++.. ...++++++++ |+++.+|.... ....++....+.++..+.+..+
T Consensus       196 ~~~---~~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~  269 (328)
T cd08268         196 TDE---EDLVAEVLRITGGKGVDVVFDPVGGPQ-FAKLADALAPG-GTLVVYGALSG-EPTPFPLKAALKKSLTFRGYSL  269 (328)
T ss_pred             cCC---ccHHHHHHHHhCCCCceEEEECCchHh-HHHHHHhhccC-CEEEEEEeCCC-CCCCCchHHHhhcCCEEEEEec
Confidence            776   6677778777776 8999999999965 88999999997 99999986433 2334554445677888888764


Q ss_pred             cCCC-ccC----cHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          332 GGLK-AKS----DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       332 ~~~~-~~~----~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      .... ..+    .++.+.+++.++.+.+  +..+.|+++++.++++.+.++.. +|+|++
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vv~~  327 (328)
T cd08268         270 DEITLDPEARRRAIAFILDGLASGALKP--VVDRVFPFDDIVEAHRYLESGQQIGKIVVT  327 (328)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHCCCCcC--CcccEEcHHHHHHHHHHHHcCCCCceEEEe
Confidence            4321 111    2444555666775543  36788999999999999887665 488875

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=2.1e-33  Score=256.88  Aligned_cols=268  Identities=31%  Similarity=0.456  Sum_probs=223.3

Q ss_pred             eEEEEEceeccCcccccccccCCC-CCCCCcccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCC
Q 016507           43 EVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS  121 (388)
Q Consensus        43 eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~  121 (388)
                      ||+|||.++++|++|+..+.|..+ ...+|.++|||++|+|+++|++++.|++||+|+..+...|+.|..|+.    .|+
T Consensus         1 ~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~----~~~   76 (271)
T cd05188           1 EVLVRVEAAGLCGTDLHIRRGGYPPPPKLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRE----LCP   76 (271)
T ss_pred             CeEEEEEEEEecchhHHHHcCCCCcCCCCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHh----hCC
Confidence            689999999999999999888764 345688999999999999999999999999999999999999999997    676


Q ss_pred             CCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCC
Q 016507          122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV  201 (388)
Q Consensus       122 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~  201 (388)
                      ....   .+....                   |+|++|+.++.+.++++|+++++++++.+++++.|||+++.....+.+
T Consensus        77 ~~~~---~~~~~~-------------------g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~  134 (271)
T cd05188          77 GGGI---LGEGLD-------------------GGFAEYVVVPADNLVPLPDGLSLEEAALLPEPLATAYHALRRAGVLKP  134 (271)
T ss_pred             CCCE---eccccC-------------------CcceEEEEechHHeEECCCCCCHHHhhHhcCHHHHHHHHHHhccCCCC
Confidence            5443   333333                   499999999999999999999999999999999999998877766799


Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEcc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV  280 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~  280 (388)
                      +++|||+|+|++|++++++++..|. +|+++++++++.++++++|++++++..+   ..+.+.+. .+.+ ++|++|+++
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~-~~~~~~~d~vi~~~  209 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAAGA-RVIVTDRSDEKLELAKELGADHVIDYKE---EDLEEELR-LTGGGGADVVIDAV  209 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHHhCCceeccCCc---CCHHHHHH-HhcCCCCCEEEECC
Confidence            9999999985599999999999998 9999999999999999999999988776   55666665 4444 899999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHH
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKR  346 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~  346 (388)
                      +.......++++++++ |+++.+|....... .......+.+++.+.++....+   .++++++++
T Consensus       210 ~~~~~~~~~~~~l~~~-G~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  270 (271)
T cd05188         210 GGPETLAQALRLLRPG-GRIVVVGGTSGGPP-LDDLRRLLFKELTIIGSTGGTR---EDFEEALDL  270 (271)
T ss_pred             CCHHHHHHHHHhcccC-CEEEEEccCCCCCC-cccHHHHHhcceEEEEeecCCH---HHHHHHHhh
Confidence            9955589999999997 99999997543322 2224456778999999875443   456666654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=100.00  E-value=7.5e-33  Score=259.79  Aligned_cols=311  Identities=22%  Similarity=0.267  Sum_probs=255.6

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+.+..++.+  +.+.+.+.|.+++++++||+.++++|++|+....+.+.. ..+|.++|||++|+|+.+|+++..++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~i~v~~~~~~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~vg~~~~~~~   80 (325)
T TIGR02824         1 MKAIEITEPGGPEVLVLVEVPLPVPKAGEVLIRVAAAGVNRPDLLQRAGKYPPPPGASDILGLEVAGEVVAVGEGVSRWK   80 (325)
T ss_pred             CceEEEccCCCcccceEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCCccceeEEEEEEeCCCCCCCC
Confidence            688888776654  666777777789999999999999999999888775532 34578999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|+...                              .                   .|+|++|+.++...++++|++
T Consensus        81 ~Gd~V~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~~ip~~  111 (325)
T TIGR02824        81 VGDRVCALV------------------------------A-------------------GGGYAEYVAVPAGQVLPVPEG  111 (325)
T ss_pred             CCCEEEEcc------------------------------C-------------------CCcceeEEEecHHHcEeCCCC
Confidence            999997420                              0                   138999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++.+++.+++.+.|+|.++.+...+.++++|+|+|+ |++|.+++++++..|+ +|+++.+++++.+.++.+|++.+++
T Consensus       112 ~~~~~~~~~~~~~~ta~~~~~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~  190 (325)
T TIGR02824       112 LSLVEAAALPETFFTVWSNLFQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGA-RVFTTAGSDEKCAACEALGADIAIN  190 (325)
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCcEEEe
Confidence            9999999999999999998878889999999999996 9999999999999999 8999988898888888899988888


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      ...   .++.+.+.+...+ ++|++++++++.. ...++++++++ |+++.+|....... .+++..++.+++.+.+...
T Consensus       191 ~~~---~~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~  264 (325)
T TIGR02824       191 YRE---EDFVEVVKAETGGKGVDVILDIVGGSY-LNRNIKALALD-GRIVQIGFQGGRKA-ELDLGPLLAKRLTITGSTL  264 (325)
T ss_pred             cCc---hhHHHHHHHHcCCCCeEEEEECCchHH-HHHHHHhhccC-cEEEEEecCCCCcC-CCChHHHHhcCCEEEEEeh
Confidence            766   6677788877776 8999999999865 88999999997 99999986432222 5566666688999998875


Q ss_pred             cCCCc-------cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEe
Q 016507          332 GGLKA-------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIW  385 (388)
Q Consensus       332 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~  385 (388)
                      .....       ...+.++++++.++.+.  +++++.|+++++.++++.+.++.. +|++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  324 (325)
T TIGR02824       265 RARPVAEKAAIAAELREHVWPLLASGRVR--PVIDKVFPLEDAAQAHALMESGDHIGKIVLT  324 (325)
T ss_pred             hhcchhhhHHHHHHHHHHHHHHHHCCccc--CccccEEeHHHHHHHHHHHHhCCCcceEEEe
Confidence            44211       12345677888888654  346788999999999999887655 488875

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=100.00  E-value=7.4e-32  Score=252.70  Aligned_cols=309  Identities=25%  Similarity=0.394  Sum_probs=252.1

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCC-CeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      |+|+++..++.+  +++.+.+ |.+.+ ++++||+.++++|++|+..+.|.+.. ..+|.++|||++|+|+.+|+++..+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~   79 (323)
T cd08241           1 MKAVVCKELGGPEDLVLEEVP-PEPGAPGEVRIRVEAAGVNFPDLLMIQGKYQVKPPLPFVPGSEVAGVVEAVGEGVTGF   79 (323)
T ss_pred             CeEEEEecCCCcceeEEecCC-CCCCCCCeEEEEEEEEecCHHHHHHHcCCCCCCCCCCCcccceeEEEEEEeCCCCCCC
Confidence            689998755433  7777777 76664 99999999999999999988776532 3446789999999999999999999


Q ss_pred             CCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCC
Q 016507           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (388)
Q Consensus        93 ~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~  172 (388)
                      ++||+|+...                              .                   .|++++|+.++.+.++++|+
T Consensus        80 ~~G~~V~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~~ip~  110 (323)
T cd08241          80 KVGDRVVALT------------------------------G-------------------QGGFAEEVVVPAAAVFPLPD  110 (323)
T ss_pred             CCCCEEEEec------------------------------C-------------------CceeEEEEEcCHHHceeCCC
Confidence            9999997431                              0                   14899999999999999999


Q ss_pred             CCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      +++..+++.+...+.+|+.++.+...+.++++|+|+|+ |++|++++++++..|+ +|++++.++++.++++++|++.++
T Consensus       111 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~  189 (323)
T cd08241         111 GLSFEEAAALPVTYGTAYHALVRRARLQPGETVLVLGAAGGVGLAAVQLAKALGA-RVIAAASSEEKLALARALGADHVI  189 (323)
T ss_pred             CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCchHHHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHcCCceee
Confidence            99999998899899999998777788999999999997 9999999999999999 799999999999999999998888


Q ss_pred             cCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          252 NSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      +...   .++.+.+.+.+.+ ++|++++++|+.. +..++++++++ |+++.+|..... ...++....+.++.++.+..
T Consensus       190 ~~~~---~~~~~~i~~~~~~~~~d~v~~~~g~~~-~~~~~~~~~~~-g~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  263 (323)
T cd08241         190 DYRD---PDLRERVKALTGGRGVDVVYDPVGGDV-FEASLRSLAWG-GRLLVIGFASGE-IPQIPANLLLLKNISVVGVY  263 (323)
T ss_pred             ecCC---ccHHHHHHHHcCCCCcEEEEECccHHH-HHHHHHhhccC-CEEEEEccCCCC-cCcCCHHHHhhcCcEEEEEe
Confidence            8776   6788888888777 8999999999854 88999999997 999999864321 11234444566788888876


Q ss_pred             ecCCCc------cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          331 FGGLKA------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       331 ~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                      ...+..      .+.+.++++++.++.+.  ++.++.|+++++.++++.+.++.. +|+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv  322 (323)
T cd08241         264 WGAYARREPELLRANLAELFDLLAEGKIR--PHVSAVFPLEQAAEALRALADRKATGKVVL  322 (323)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHCCCcc--cccceEEcHHHHHHHHHHHHhCCCCCcEEe
Confidence            544321      23567788899888654  447789999999999998887655 47776

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=100.00  E-value=2.1e-32  Score=255.00  Aligned_cols=301  Identities=21%  Similarity=0.289  Sum_probs=241.4

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC---CCCCCcccccceeEEEEEecCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      |||+++..++..  +.+++.+.|.+++++|+||+.++++|++|+..+.|...   ...+|.++|||++|+|+++|++++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~~~~   80 (309)
T cd05289           1 MKAVRIHEYGGPEVLELADVPTPEPGPGEVLVKVHAAGVNPVDLKIREGLLKAAFPLTLPLIPGHDVAGVVVAVGPGVTG   80 (309)
T ss_pred             CceEEEcccCCccceeecccCCCCCCCCeEEEEEEEeeCCHHHHHHhcCCccccCCCCCCCccccceeEEEEeeCCCCCC
Confidence            689998877753  55677788888999999999999999999998877642   3345889999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      +++||+|+..+..                           ..                   .|+|++|+.++...++++|
T Consensus        81 ~~~G~~V~~~~~~---------------------------~~-------------------~g~~~~~~~~~~~~~~~~p  114 (309)
T cd05289          81 FKVGDEVFGMTPF---------------------------TR-------------------GGAYAEYVVVPADELALKP  114 (309)
T ss_pred             CCCCCEEEEccCC---------------------------CC-------------------CCcceeEEEecHHHhccCC
Confidence            9999999753210                           00                   1499999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      +++++..++.+++.+.+++.++.+...+.++++|+|+|+ |.+|++++++++..|+ +|+++..++ +.++++.+|++++
T Consensus       115 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~-~~~~~~~~g~~~~  192 (309)
T cd05289         115 ANLSFEEAAALPLAGLTAWQALFELGGLKAGQTVLIHGAAGGVGSFAVQLAKARGA-RVIATASAA-NADFLRSLGADEV  192 (309)
T ss_pred             CCCCHHHHHhhhHHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHcCC-EEEEEecch-hHHHHHHcCCCEE
Confidence            999999999999999999998777677999999999997 9999999999999999 788887777 8888888998888


Q ss_pred             EcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          251 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      ++.+.   .++.+    .+.+ ++|+++|++++.. ...++++++++ |+++.+|.....  ..    ....++..+...
T Consensus       193 ~~~~~---~~~~~----~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~-g~~v~~g~~~~~--~~----~~~~~~~~~~~~  257 (309)
T cd05289         193 IDYTK---GDFER----AAAPGGVDAVLDTVGGET-LARSLALVKPG-GRLVSIAGPPPA--EQ----AAKRRGVRAGFV  257 (309)
T ss_pred             EeCCC---Cchhh----ccCCCCceEEEECCchHH-HHHHHHHHhcC-cEEEEEcCCCcc--hh----hhhhccceEEEE
Confidence            88765   34433    2333 8999999999885 89999999997 999999864321  11    233456666655


Q ss_pred             eecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEE
Q 016507          330 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  384 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv  384 (388)
                      .+...  ...++.+++++.++.+  .+++++.|+++++++|++.+.++... |+++
T Consensus       258 ~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~kvv~  309 (309)
T cd05289         258 FVEPD--GEQLAELAELVEAGKL--RPVVDRVFPLEDAAEAHERLESGHARGKVVL  309 (309)
T ss_pred             Eeccc--HHHHHHHHHHHHCCCE--EEeeccEEcHHHHHHHHHHHHhCCCCCcEeC
Confidence            43222  4578889999988864  34577899999999999998876543 6653

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>cd08251 polyketide_synthase polyketide synthase

Probab=100.00  E-value=4.9e-32  Score=251.85  Aligned_cols=292  Identities=24%  Similarity=0.317  Sum_probs=235.2

Q ss_pred             cCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccC
Q 016507           36 VDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRS  114 (388)
Q Consensus        36 ~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~  114 (388)
                      .|++.+++|+||+.++++|++|+..+.+.++. ..+|.++|+|++|+|+++|+++++|++||+|+....           
T Consensus         2 ~p~~~~~~v~v~v~~~~i~~~d~~~~~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~-----------   70 (303)
T cd08251           2 VAPPGPGEVRIQVRAFSLNFGDLLCVRGLYPTMPPYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTG-----------   70 (303)
T ss_pred             CCCCCCCEEEEEEEEeecChHHHHHHCCCCCCCCCCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecC-----------
Confidence            57889999999999999999999988876543 356889999999999999999999999999975311           


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHH
Q 016507          115 KKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW  194 (388)
Q Consensus       115 ~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~  194 (388)
                                       ..+                   |+|++|+.++.+.++++|+++++++++.++..+.|||.++ 
T Consensus        71 -----------------~~~-------------------g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-  113 (303)
T cd08251          71 -----------------ESM-------------------GGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-  113 (303)
T ss_pred             -----------------CCC-------------------cceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-
Confidence                             011                   4999999999999999999999999999999999999976 


Q ss_pred             HhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-C
Q 016507          195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G  272 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~  272 (388)
                      +...+.++++|+|+|+ |.+|++++++++.+|+ +|+++.+++++.+.++.+|++.+++...   .++.+.+.+.+++ +
T Consensus       114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~i~~~~~~~~  189 (303)
T cd08251         114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGA-EIYATASSDDKLEYLKQLGVPHVINYVE---EDFEEEIMRLTGGRG  189 (303)
T ss_pred             HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHcCCCEEEeCCC---ccHHHHHHHHcCCCC
Confidence            5788999999999975 9999999999999999 8999999999999999999999998876   6788888888877 8


Q ss_pred             ccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC------ccCcHHHHHHH
Q 016507          273 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK------AKSDIPILLKR  346 (388)
Q Consensus       273 ~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~~~~  346 (388)
                      +|+++|++++.. ....+++++++ |+++.+|.........++... +.++..+....+....      ..+.+.+++++
T Consensus       190 ~d~v~~~~~~~~-~~~~~~~l~~~-g~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (303)
T cd08251         190 VDVVINTLSGEA-IQKGLNCLAPG-GRYVEIAMTALKSAPSVDLSV-LSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSL  266 (303)
T ss_pred             ceEEEECCcHHH-HHHHHHHhccC-cEEEEEeccCCCccCccChhH-hhcCceEEEEehHHhhhhCHHHHHHHHHHHHHH
Confidence            999999997654 88999999997 999999864322222334333 2334444433322111      12346678888


Q ss_pred             HhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEE
Q 016507          347 YMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  384 (388)
Q Consensus       347 ~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv  384 (388)
                      +.++.+.+  +.++.|+++++.++++.+.++... |+++
T Consensus       267 ~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~iv~  303 (303)
T cd08251         267 VEEGELRP--TVSRIFPFDDIGEAYRYLSDRENIGKVVV  303 (303)
T ss_pred             HHCCCccC--CCceEEcHHHHHHHHHHHHhCCCcceEeC
Confidence            88886543  467899999999999998876654 7763

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=100.00  E-value=3.5e-31  Score=250.10  Aligned_cols=311  Identities=22%  Similarity=0.314  Sum_probs=246.2

Q ss_pred             eeeeecCCCC--CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCCC
Q 016507           18 RAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        18 ka~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      ||+++...+.  .+.+.+.+.|++.+++|+||+.++++|++|+..+.|.... +..|.++|||++|+|+.+|+++.++++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~v~~~~i~~~d~~~~~g~~~~~~~~~~~~g~e~~G~v~~~g~~~~~~~~   80 (337)
T cd08275           1 RAVVLTGFGGLDKLKVEKEALPEPSSGEVRVRVEACGLNFADLMARQGLYDSAPKPPFVPGFECAGTVEAVGEGVKDFKV   80 (337)
T ss_pred             CeEEEcCCCCccceEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCcceeEEEEEEECCCCcCCCC
Confidence            4566655543  2777788888889999999999999999999988876532 345778999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||+|+...                              .                   .|+|++|+.++.+.++++|+++
T Consensus        81 G~~V~~~~------------------------------~-------------------~~~~~~~~~~~~~~~~~ip~~~  111 (337)
T cd08275          81 GDRVMGLT------------------------------R-------------------FGGYAEVVNVPADQVFPLPDGM  111 (337)
T ss_pred             CCEEEEec------------------------------C-------------------CCeeeeEEEecHHHeEECCCCC
Confidence            99997431                              0                   1389999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      ++.+++.+++.+.+||+++.+...+.++++|+|+|+ |.+|++++++|+.. +. .++.. ..+++.++++.+|++.+++
T Consensus       112 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~vli~g~~g~~g~~~~~~a~~~~~~-~~~~~-~~~~~~~~~~~~g~~~~~~  189 (337)
T cd08275         112 SFEEAAAFPVNYLTAYYALFELGNLRPGQSVLVHSAAGGVGLAAGQLCKTVPNV-TVVGT-ASASKHEALKENGVTHVID  189 (337)
T ss_pred             CHHHHhhhhHHHHHHHHHHHHhhCCCCCCEEEEEcCcchHHHHHHHHHHHccCc-EEEEe-CCHHHHHHHHHcCCcEEee
Confidence            999999999999999998888888999999999997 99999999999998 33 33322 2355778888899998988


Q ss_pred             CCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCc---------------cccCHH
Q 016507          253 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ---------------LSLSSF  317 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~---------------~~~~~~  317 (388)
                      .+.   ..+.+.+++.+++++|+++||+|+.. ...++++++++ |+++.+|.......               ..+...
T Consensus       190 ~~~---~~~~~~~~~~~~~~~d~v~~~~g~~~-~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (337)
T cd08275         190 YRT---QDYVEEVKKISPEGVDIVLDALGGED-TRKSYDLLKPM-GRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPM  264 (337)
T ss_pred             CCC---CcHHHHHHHHhCCCceEEEECCcHHH-HHHHHHhhccC-cEEEEEeecCCcCcccccccccccccccccccCHH
Confidence            876   67778888777558999999999875 88999999997 99999986432111               122234


Q ss_pred             HHHhcCcEEEEeeecCCCc-----cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          318 EVLHSGKILMGSLFGGLKA-----KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       318 ~~~~~~~~i~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      .++.++..+.++.+.....     ...+.++++++.++.+.+  +.++.|++++++++++.+.++.. +|+++++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~kvv~~~  337 (337)
T cd08275         265 KLISENKSVLGFNLGWLFEERELLTEVMDKLLKLYEEGKIKP--KIDSVFPFEEVGEAMRRLQSRKNIGKVVLTP  337 (337)
T ss_pred             HHhhcCceEEEeechhhhhChHHHHHHHHHHHHHHHCCCCCC--ceeeEEcHHHHHHHHHHHHcCCCcceEEEeC
Confidence            5567788888876542211     123667888888886543  46789999999999999887665 4888864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.98  E-value=1.3e-30  Score=244.36  Aligned_cols=295  Identities=23%  Similarity=0.263  Sum_probs=226.5

Q ss_pred             EEEEeecCCCCCCeEEEEEceeccCcccccccccCCC---CCCCCcccccceeEEEEEecCCCCCCCCCCEEeecCCCCC
Q 016507           30 VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADC  106 (388)
Q Consensus        30 ~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~  106 (388)
                      ++.+.|.|++++++|+|++.++++|++|+..+.|..+   ...+|.++|||++|+|+++|++++++++||+|+.....  
T Consensus        15 ~~~~~~~~~~~~~~v~v~v~~~~i~~~d~~~~~g~~~~~~~~~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~--   92 (319)
T cd08267          15 LEVEVPIPTPKPGEVLVKVHAASVNPVDWKLRRGPPKLLLGRPFPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPP--   92 (319)
T ss_pred             ccccCCCCCCCCCEEEEEEEEeeCCHHHHHHHcCCCcccccCCCCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccC--
Confidence            7778899999999999999999999999998877652   12346789999999999999999999999999753210  


Q ss_pred             CCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCccccccccchh
Q 016507          107 TECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV  186 (388)
Q Consensus       107 ~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~  186 (388)
                                               ..                   .|+|++|+.++.+.++++|+++++.+++.+++.+
T Consensus        93 -------------------------~~-------------------~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~  128 (319)
T cd08267          93 -------------------------KG-------------------GGALAEYVVAPESGLAKKPEGVSFEEAAALPVAG  128 (319)
T ss_pred             -------------------------CC-------------------CceeeEEEEechhheEECCCCCCHHHHHhhhhHH
Confidence                                     01                   1499999999999999999999999999999999


Q ss_pred             hhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHH
Q 016507          187 STGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQII  265 (388)
Q Consensus       187 ~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i  265 (388)
                      .+||+++.....+.++++|+|+|+ |++|++++++|+.+|+ +|+++.++ ++.+.++.+|++++++.+.   .++.   
T Consensus       129 ~~a~~~~~~~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~-~v~~~~~~-~~~~~~~~~g~~~~~~~~~---~~~~---  200 (319)
T cd08267         129 LTALQALRDAGKVKPGQRVLINGASGGVGTFAVQIAKALGA-HVTGVCST-RNAELVRSLGADEVIDYTT---EDFV---  200 (319)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCH-HHHHHHHHcCCCEeecCCC---CCcc---
Confidence            999998877777999999999997 9999999999999999 88888765 7888889999988888765   3333   


Q ss_pred             HhhcCC-CccEEEEccCCH-HHHHHHHHHhhcCCceEEEEccCCCCCcccc---CHHHHHhcCcEEEEeeecCCCccCcH
Q 016507          266 IDMTDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGVDQPGSQLSL---SSFEVLHSGKILMGSLFGGLKAKSDI  340 (388)
Q Consensus       266 ~~~~~g-~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~---~~~~~~~~~~~i~g~~~~~~~~~~~~  340 (388)
                      ...+.+ ++|++++|+++. ......+..++++ |+++.+|..........   ....... ...+.......  ..+.+
T Consensus       201 ~~~~~~~~~d~vi~~~~~~~~~~~~~~~~l~~~-g~~i~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~  276 (319)
T cd08267         201 ALTAGGEKYDVIFDAVGNSPFSLYRASLALKPG-GRYVSVGGGPSGLLLVLLLLPLTLGGG-GRRLKFFLAKP--NAEDL  276 (319)
T ss_pred             hhccCCCCCcEEEECCCchHHHHHHhhhccCCC-CEEEEeccccccccccccccchhhccc-cceEEEEEecC--CHHHH
Confidence            334444 899999999853 2234444458896 99999986432222211   1111111 22222222111  14678


Q ss_pred             HHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCcee-EEEE
Q 016507          341 PILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  384 (388)
Q Consensus       341 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv  384 (388)
                      .++++++.++.+.  +++++.|+++++++|++.+.++... |+++
T Consensus       277 ~~~~~~l~~~~~~--~~~~~~~~~~~i~~a~~~~~~~~~~~~vvv  319 (319)
T cd08267         277 EQLAELVEEGKLK--PVIDSVYPLEDAPEAYRRLKSGRARGKVVI  319 (319)
T ss_pred             HHHHHHHHCCCee--eeeeeEEcHHHHHHHHHHHhcCCCCCcEeC
Confidence            8899999988654  3477999999999999999876543 6653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=99.98  E-value=1.8e-30  Score=239.44  Aligned_cols=282  Identities=23%  Similarity=0.246  Sum_probs=230.5

Q ss_pred             CeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCC
Q 016507           42 HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCS  121 (388)
Q Consensus        42 ~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~  121 (388)
                      +||+||+.++++|++|++...|..+  .+|.++|||++|+|+++|++++.|++||+|....                   
T Consensus         1 ~~v~i~v~~~~~~~~d~~~~~g~~~--~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-------------------   59 (293)
T cd05195           1 DEVEVEVKAAGLNFRDVLVALGLLP--GDETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-------------------   59 (293)
T ss_pred             CceEEEEEEEecCHHHHHHHhCCCC--CCCCccceeeeEEEEeecCCccCCCCCCEEEEEe-------------------
Confidence            5899999999999999999887652  4578999999999999999999999999997421                   


Q ss_pred             CCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCC
Q 016507          122 AFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEV  201 (388)
Q Consensus       122 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~  201 (388)
                                                     .|+|++|+.++.+.++++|+++++.+++.+++.+.|++.++.+...+++
T Consensus        60 -------------------------------~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  108 (293)
T cd05195          60 -------------------------------PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLARLQK  108 (293)
T ss_pred             -------------------------------cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhccCC
Confidence                                           2499999999999999999999999999999999999998877788999


Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC--CcEEEcCCCCCCccHHHHHHhhcCC-CccEEE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF  277 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg--a~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvi  277 (388)
                      |++|+|+|+ |.+|++++++++.+|+ +|+++.+++++.++++.++  ++.+++...   .++.+.+.+.+.+ ++|+++
T Consensus       109 g~~vlv~g~~g~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi  184 (293)
T cd05195         109 GESVLIHAAAGGVGQAAIQLAQHLGA-EVFATVGSEEKREFLRELGGPVDHIFSSRD---LSFADGILRATGGRGVDVVL  184 (293)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHhCCCcceEeecCc---hhHHHHHHHHhCCCCceEEE
Confidence            999999975 9999999999999999 8999988889999998888  788888766   6788888888777 899999


Q ss_pred             EccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC------ccCcHHHHHHHHhCCC
Q 016507          278 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK------AKSDIPILLKRYMDKE  351 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~------~~~~~~~~~~~~~~~~  351 (388)
                      |++++. ....++++++++ |+++.+|.........+.... +.++..+....+....      ..+.+.++++++.++.
T Consensus       185 ~~~~~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (293)
T cd05195         185 NSLSGE-LLRASWRCLAPF-GRFVEIGKRDILSNSKLGMRP-FLRNVSFSSVDLDQLARERPELLRELLREVLELLEAGV  261 (293)
T ss_pred             eCCCch-HHHHHHHhcccC-ceEEEeeccccccCCccchhh-hccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHHHCCC
Confidence            999998 499999999997 999999864322112233222 3346666655433221      1224677888888886


Q ss_pred             CCCCcceeeeEecchHHHHHHHHhcCcee-EEEE
Q 016507          352 LELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI  384 (388)
Q Consensus       352 ~~~~~~i~~~~~l~~~~~A~~~~~~~~~~-kvvv  384 (388)
                      +.  ++.++.++++++.++++.+.++... |+|+
T Consensus       262 ~~--~~~~~~~~~~~~~~a~~~~~~~~~~~~ivv  293 (293)
T cd05195         262 LK--PLPPTVVPSASEIDAFRLMQSGKHIGKVVL  293 (293)
T ss_pred             cc--cCCCeeechhhHHHHHHHHhcCCCCceecC
Confidence            54  4567889999999999999877654 7663

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>smart00829 PKS_ER Enoylreductase

Probab=99.97  E-value=2.5e-30  Score=238.16  Aligned_cols=277  Identities=21%  Similarity=0.281  Sum_probs=225.6

Q ss_pred             EEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCC
Q 016507           46 VRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPF  125 (388)
Q Consensus        46 Vkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~  125 (388)
                      ||+.++++|++|++...|.++   .|.++|||++|+|+++|++++.|++||+|...                        
T Consensus         2 i~v~~~~i~~~d~~~~~g~~~---~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~------------------------   54 (288)
T smart00829        2 VEVRAAGLNFRDVLIALGLLP---GEAVLGGECAGVVTRVGPGVTGLAVGDRVMGL------------------------   54 (288)
T ss_pred             eeEEEEecCHHHHHHhcCCCC---CCCCCCceeEEEEEeeCCCCcCCCCCCEEEEE------------------------
Confidence            789999999999999887653   36789999999999999999999999999742                        


Q ss_pred             CCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEE
Q 016507          126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV  205 (388)
Q Consensus       126 ~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~V  205 (388)
                                                ..|+|++|+.++.+.++++|+++++.+++.+++.+.|+|.++.+...+.++++|
T Consensus        55 --------------------------~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~g~~v  108 (288)
T smart00829       55 --------------------------APGSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARLRPGESV  108 (288)
T ss_pred             --------------------------cCCceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCCCCCCEE
Confidence                                      124999999999999999999999999999999999999987778889999999


Q ss_pred             EEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC--cEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccC
Q 016507          206 VIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVG  281 (388)
Q Consensus       206 lI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga--~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g  281 (388)
                      +|+|+ |.+|++++++++..|+ +|+++++++++.+.++++|+  +.+++..+   .++.+.+.+.+.+ ++|+++|+++
T Consensus       109 lv~g~~~~~g~~~~~~a~~~g~-~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~~  184 (288)
T smart00829      109 LIHAAAGGVGQAAIQLAQHLGA-EVFATAGSPEKRDFLRELGIPDDHIFSSRD---LSFADEILRATGGRGVDVVLNSLA  184 (288)
T ss_pred             EEecCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCChhheeeCCC---ccHHHHHHHHhCCCCcEEEEeCCC
Confidence            99986 9999999999999999 89999999999999999998  78888766   6677788887776 8999999999


Q ss_pred             CHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC-----ccCcHHHHHHHHhCCCCCCCc
Q 016507          282 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK-----AKSDIPILLKRYMDKELELDK  356 (388)
Q Consensus       282 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  356 (388)
                      +. ....++++++++ |+++.+|.........++... +.++..+.+..+....     ..+.+.++++++.++.+.+. 
T Consensus       185 ~~-~~~~~~~~l~~~-g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  260 (288)
T smart00829      185 GE-FLDASLRCLAPG-GRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFAEGVLRPL-  260 (288)
T ss_pred             HH-HHHHHHHhccCC-cEEEEEcCcCCccccccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHHCCCccCc-
Confidence            64 488999999997 999999864322222334333 3456666665433211     11246678888888876543 


Q ss_pred             ceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          357 FVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       357 ~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                       ..+.|++++++++++.+..+.. +|+++
T Consensus       261 -~~~~~~~~~~~~~~~~~~~~~~~~~ivv  288 (288)
T smart00829      261 -PVTVFPISDVEDAFRYMQQGKHIGKVVL  288 (288)
T ss_pred             -CceEEcHHHHHHHHHHHhcCCCcceEeC
Confidence             5588999999999999887754 37653

Enoylreductase in Polyketide synthases.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=99.96  E-value=1e-27  Score=220.64  Aligned_cols=251  Identities=27%  Similarity=0.405  Sum_probs=199.9

Q ss_pred             cCCCCCCCCcccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCcccccc
Q 016507           63 MKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDL  142 (388)
Q Consensus        63 g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~  142 (388)
                      |.++. ++|.++|||++|+|+++|+++++|++||+|+..                                         
T Consensus        14 ~~~~~-~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~-----------------------------------------   51 (277)
T cd08255          14 GTEKL-PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF-----------------------------------------   51 (277)
T ss_pred             cCccC-cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec-----------------------------------------
Confidence            44443 478999999999999999999999999999742                                         


Q ss_pred             CCceecccccccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHH
Q 016507          143 RGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGAR  222 (388)
Q Consensus       143 ~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~  222 (388)
                                 +.|++|+.++.+.++++|+++++.+++.+ +++.|||+++ ..+++.++++|||+|+|++|++++++|+
T Consensus        52 -----------~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~~~~~g~~vlI~g~g~vg~~~i~~a~  118 (277)
T cd08255          52 -----------GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDAEPRLGERVAVVGLGLVGLLAAQLAK  118 (277)
T ss_pred             -----------CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHH
Confidence                       26899999999999999999999999888 7899999976 5788999999999988999999999999


Q ss_pred             HcCCcEEEEEcCCchHHHHHHHcC-CcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceE
Q 016507          223 LCGATRIIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT  300 (388)
Q Consensus       223 ~~g~~~Vi~~~~~~~~~~~~~~lg-a~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~  300 (388)
                      .+|+++|+++++++++.++++++| ++.+++..+           ..+.+ ++|++||+++.......++++++++ |++
T Consensus       119 ~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~-----------~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~-g~~  186 (277)
T cd08255         119 AAGAREVVGVDPDAARRELAEALGPADPVAADTA-----------DEIGGRGADVVIEASGSPSALETALRLLRDR-GRV  186 (277)
T ss_pred             HcCCCcEEEECCCHHHHHHHHHcCCCccccccch-----------hhhcCCCCCEEEEccCChHHHHHHHHHhcCC-cEE
Confidence            999944999999999999999999 555554322           11233 8999999999777689999999997 999


Q ss_pred             EEEccCCCCCccccCHHHHHhcCcEEEEeeecCC---------CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHH
Q 016507          301 IVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL---------KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF  371 (388)
Q Consensus       301 v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~  371 (388)
                      +.+|..... . ......+..+.+.+.+..+...         ...+.++++++++.++.+.  +++.+.|+++++++|+
T Consensus       187 ~~~g~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~--~~~~~~~~~~~~~~a~  262 (277)
T cd08255         187 VLVGWYGLK-P-LLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDLLAEGRLE--ALITHRVPFEDAPEAY  262 (277)
T ss_pred             EEEeccCCC-c-cccHHHHHhccCeEEeecccccccccccccccccccHHHHHHHHHcCCcc--ccccCccCHHHHHHHH
Confidence            999975432 1 1222334445667776654321         1125688999999999644  4467899999999999


Q ss_pred             HHHhcC--ceeEEEE
Q 016507          372 DLLIKG--KCLRCVI  384 (388)
Q Consensus       372 ~~~~~~--~~~kvvv  384 (388)
                      +.+.++  ...|+++
T Consensus       263 ~~~~~~~~~~~k~~~  277 (277)
T cd08255         263 RLLFEDPPECLKVVL  277 (277)
T ss_pred             HHHHcCCccceeeeC
Confidence            999877  3348764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=99.95  E-value=5.1e-28  Score=240.42  Aligned_cols=292  Identities=19%  Similarity=0.193  Sum_probs=244.9

Q ss_pred             eEEEEeecC---CCCCCeEEEEEceeccCcccccccccCCCCCCCC-------cccccceeEEEEEecCCCCCCCCCCEE
Q 016507           29 LVIDEVIVD---PPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP-------RILGHEAIGVVESVGENVDGVVEGDVV   98 (388)
Q Consensus        29 ~~~~~~~~p---~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p-------~v~G~e~~G~Vv~vG~~v~~~~vGd~V   98 (388)
                      ++|.+-|..   +..++.=+.-|.|++||..|+....|..++...|       .++|-||+|+          .+-|.||
T Consensus      1429 lrWies~~~~a~~~~~~~e~CtVYYAplNFRDiMLasGkL~~DAiPG~~a~qdclLGmEFsGR----------d~~GrRv 1498 (2376)
T KOG1202|consen 1429 LRWIESPLRHAQPTCPGLELCTVYYAPLNFRDIMLASGKLSPDAIPGDLASQDCLLGMEFSGR----------DASGRRV 1498 (2376)
T ss_pred             eeeeecchhhcCCCCCCCceeEEEeccccHHHHHHhcCCCCcccCCCccchhhheeceeeccc----------cCCCcEE
Confidence            777776654   3356778999999999999999999988765444       4889999997          4559999


Q ss_pred             eecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCccc
Q 016507           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR  178 (388)
Q Consensus        99 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~  178 (388)
                      +.                              +.+..                   ++|+-+.++.+++|.+|+++.+++
T Consensus      1499 M~------------------------------mvpAk-------------------sLATt~l~~rd~lWevP~~WTlee 1529 (2376)
T KOG1202|consen 1499 MG------------------------------MVPAK-------------------SLATTVLASRDFLWEVPSKWTLEE 1529 (2376)
T ss_pred             EE------------------------------eeehh-------------------hhhhhhhcchhhhhhCCcccchhh
Confidence            53                              33333                   889999999999999999999999


Q ss_pred             cccccchhhhhHHHHHHhcCCCCCCEEEEE-ccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEEEcC
Q 016507          179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNS  253 (388)
Q Consensus       179 aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~-Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~  253 (388)
                      |+++||.|.|||++++.....++|++|||+ |+|++|++||.+|-+.|+ +|.-+..+.+|++++++    +...++-|+
T Consensus      1530 AstVP~VYsTaYYALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~-~VFTTVGSaEKRefL~~rFPqLqe~~~~NS 1608 (2376)
T KOG1202|consen 1530 ASTVPVVYSTAYYALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGC-TVFTTVGSAEKREFLLKRFPQLQETNFANS 1608 (2376)
T ss_pred             cccCceEeeeehhhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCC-EEEEecCcHHHHHHHHHhchhhhhhccccc
Confidence            999999999999999999999999999999 469999999999999999 99999999999999875    445678888


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      ++   .+|+..++..|+| |+|+|++...... ++.+++||+.. |++..+|-..-.+..++.+.. +.+|.+++|..+.
T Consensus      1609 Rd---tsFEq~vl~~T~GrGVdlVLNSLaeEk-LQASiRCLa~~-GRFLEIGKfDLSqNspLGMav-fLkNvsfHGiLLD 1682 (2376)
T KOG1202|consen 1609 RD---TSFEQHVLWHTKGRGVDLVLNSLAEEK-LQASIRCLALH-GRFLEIGKFDLSQNSPLGMAV-FLKNVSFHGILLD 1682 (2376)
T ss_pred             cc---ccHHHHHHHHhcCCCeeeehhhhhHHH-HHHHHHHHHhc-CeeeeecceecccCCcchhhh-hhcccceeeeehh
Confidence            88   8899999999999 9999999988877 99999999996 999999976555555566443 5669999999865


Q ss_pred             CCC--ccCcHHHHHHHHhCCCCC--CCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          333 GLK--AKSDIPILLKRYMDKELE--LDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       333 ~~~--~~~~~~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..-  ..+.+.++..++++|...  ..++.+++|+-.++++||++|.++.. +|+|+++
T Consensus      1683 svmege~e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qvE~AFRfMasGKHIGKVvikv 1741 (2376)
T KOG1202|consen 1683 SVMEGEEEMWREVAALVAEGIKSGVVRPLPTTVFHGQQVEDAFRFMASGKHIGKVVIKV 1741 (2376)
T ss_pred             hhhcCcHHHHHHHHHHHHhhhccCceeccccccccHHHHHHHHHHHhccCccceEEEEE
Confidence            532  234577788888777543  56788999999999999999999876 5999975

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=99.95  E-value=6.1e-26  Score=198.38  Aligned_cols=293  Identities=21%  Similarity=0.192  Sum_probs=225.6

Q ss_pred             EeecC-CCCCCeEEEEEceeccCcccccccccCCCC-CCCCc-----ccccceeEEEEEecCCCCCCCCCCEEeecCCCC
Q 016507           33 EVIVD-PPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPR-----ILGHEAIGVVESVGENVDGVVEGDVVIPHFLAD  105 (388)
Q Consensus        33 ~~~~p-~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~-----v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~  105 (388)
                      +++++ ++++++||||.+|-+..|.....++-..+. .-.|+     +.| .++|+|++.  +-+++++||.|...    
T Consensus        28 ~~el~~~~~s~~vlvknlYLS~DPymR~rM~~~~~~~y~~~~~~G~pi~g-~GV~kVi~S--~~~~~~~GD~v~g~----  100 (343)
T KOG1196|consen   28 TVELRVPLGSGEVLVKNLYLSCDPYMRIRMGKPDPSDYAPPYEPGKPIDG-FGVAKVIDS--GHPNYKKGDLVWGI----  100 (343)
T ss_pred             eecccCCCCCccEEeEeeeecCCHHHHhhccCCCcccccCcccCCcEecC-CceEEEEec--CCCCCCcCceEEEe----
Confidence            44444 568899999999999988765544432222 11122     334 788999996  44689999999521    


Q ss_pred             CCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCc--eEEcCC--CCCccccc-
Q 016507          106 CTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH--VVKVDP--TVPPNRAC-  180 (388)
Q Consensus       106 ~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~--~~~lP~--~~~~~~aa-  180 (388)
                                                                      =+|.||.+++...  .+++|.  ++++.... 
T Consensus       101 ------------------------------------------------~gWeeysii~~~~~~~~ki~~~~~~pLs~ylg  132 (343)
T KOG1196|consen  101 ------------------------------------------------VGWEEYSVITPNDLEHFKIQHPTDVPLSYYLG  132 (343)
T ss_pred             ------------------------------------------------ccceEEEEecCcchhcccCCCCCccCHhhhhh
Confidence                                                            1899999997653  444443  45554433 


Q ss_pred             cccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCC
Q 016507          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGD  258 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~  258 (388)
                      ++..+.+|||..+++.+..++|++|+|-|| |++|+.+.|+|+.+|+ +|++++.+++|.+++++ +|.+.++|+++  .
T Consensus       133 ~lGm~glTAy~Gf~ei~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc-~VVGsaGS~EKv~ll~~~~G~d~afNYK~--e  209 (343)
T KOG1196|consen  133 LLGMPGLTAYAGFYEICSPKKGETVFVSAASGAVGQLVGQFAKLMGC-YVVGSAGSKEKVDLLKTKFGFDDAFNYKE--E  209 (343)
T ss_pred             ccCCchhHHHHHHHHhcCCCCCCEEEEeeccchhHHHHHHHHHhcCC-EEEEecCChhhhhhhHhccCCccceeccC--c
Confidence            567788999999999999999999999987 9999999999999999 99999999999999876 79999999998  2


Q ss_pred             ccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCC----CCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          259 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ----PGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       259 ~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~----~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                      .++.+++++..+.+.|+.||.+|+.. ++..+..|+.. |+++.+|...    .....--++..++.|.+++.|+....+
T Consensus       210 ~~~~~aL~r~~P~GIDiYfeNVGG~~-lDavl~nM~~~-gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~  287 (343)
T KOG1196|consen  210 SDLSAALKRCFPEGIDIYFENVGGKM-LDAVLLNMNLH-GRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDY  287 (343)
T ss_pred             cCHHHHHHHhCCCcceEEEeccCcHH-HHHHHHhhhhc-cceEeeeeehhccccCCccccchhhheeeeEEeeeEEeech
Confidence            37888888877779999999999998 99999999995 9999999643    111112344566788999999887665


Q ss_pred             Cc--cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          335 KA--KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       335 ~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      ..  .+.++.+..++++|+|....-+  .-.|+..++||.-|.++.. +|.++++.
T Consensus       288 ~d~~~k~ld~l~~~ikegKI~y~edi--~~Glen~P~A~vglf~GkNvGKqiv~va  341 (343)
T KOG1196|consen  288 LDKYPKFLDFLLPYIKEGKITYVEDI--ADGLENGPSALVGLFHGKNVGKQLVKVA  341 (343)
T ss_pred             hhhhHHHHHHHHHHHhcCceEEehhH--HHHHhccHHHHHHHhccCcccceEEEee
Confidence            42  3346778888999988665322  2369999999999988775 59888765

>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1

Probab=99.91  E-value=1.6e-24  Score=170.22  Aligned_cols=108  Identities=35%  Similarity=0.541  Sum_probs=96.1

Q ss_pred             CCeEEEEEceeccCcccccccccC-CCCCCCCcccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCC
Q 016507           41 SHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNL  119 (388)
Q Consensus        41 ~~eVlVkv~~~~i~~~D~~~~~g~-~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~  119 (388)
                      |+||||||.++|||++|+++++|. .....+|.++|||++|+|+++|++++.|++||+|++.+...|+.|.+|..+..++
T Consensus         1 P~eVlVkv~a~gic~~D~~~~~g~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~   80 (109)
T PF08240_consen    1 PGEVLVKVRAAGICGSDLHIREGGPPPPPKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNL   80 (109)
T ss_dssp             TTEEEEEEEEEEE-HHHHHHHTTSSSSTSSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGG
T ss_pred             CCEEEEEEEEeeeCHHHHHHHhhccccCCCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCcccc
Confidence            799999999999999999999993 4556789999999999999999999999999999999988899999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEc
Q 016507          120 CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (388)
Q Consensus       120 c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l  170 (388)
                      |.....   +|+..+|                   +||||+.++.++++++
T Consensus        81 c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~v  109 (109)
T PF08240_consen   81 CPNPEV---LGLGLDG-------------------GFAEYVVVPARNLVPV  109 (109)
T ss_dssp             TTTBEE---TTTSSTC-------------------SSBSEEEEEGGGEEEE
T ss_pred             CCCCCE---eEcCCCC-------------------cccCeEEEehHHEEEC
Confidence            987765   6766667                   9999999999999985

1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.76  E-value=9.8e-18  Score=136.08  Aligned_cols=129  Identities=28%  Similarity=0.490  Sum_probs=117.2

Q ss_pred             hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHH
Q 016507          212 SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  290 (388)
Q Consensus       212 ~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~  290 (388)
                      ++|++++|+|+++|+ +|++++++++|+++++++|+++++++++   .++.+.+++++++ ++|+||||+|....++.++
T Consensus         1 ~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~~~~~Ga~~~~~~~~---~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~   76 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGA-KVIATDRSEEKLELAKELGADHVIDYSD---DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTESEEEETTT---SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCC-EEEEEECCHHHHHHHHhhcccccccccc---cccccccccccccccceEEEEecCcHHHHHHHH
Confidence            589999999999996 9999999999999999999999999998   7799999999998 9999999999888899999


Q ss_pred             HHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhC
Q 016507          291 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD  349 (388)
Q Consensus       291 ~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~  349 (388)
                      ++++++ |+++.+|... ....+++...++.+++++.|++...   .++++++++++++
T Consensus        77 ~~l~~~-G~~v~vg~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~~la~  130 (130)
T PF00107_consen   77 KLLRPG-GRIVVVGVYG-GDPISFNLMNLMFKEITIRGSWGGS---PEDFQEALQLLAQ  130 (130)
T ss_dssp             HHEEEE-EEEEEESSTS-TSEEEEEHHHHHHTTEEEEEESSGG---HHHHHHHHHHHH-
T ss_pred             HHhccC-CEEEEEEccC-CCCCCCCHHHHHhCCcEEEEEccCC---HHHHHHHHHHhcC
Confidence            999997 9999999865 5778899999999999999997554   4788888888753

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.53  E-value=3.3e-13  Score=128.35  Aligned_cols=176  Identities=14%  Similarity=0.166  Sum_probs=140.1

Q ss_pred             HHHHHHhcCC-CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhh
Q 016507          190 VGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       190 ~~~l~~~~~~-~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      +.++.+..++ .+|++|+|+|.|++|+.+++.++.+|+ +|++++.++.|.+.++.+|++.+.         ..+.+   
T Consensus       189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~G~~~~~---------~~e~v---  255 (413)
T cd00401         189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAMEGYEVMT---------MEEAV---  255 (413)
T ss_pred             HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhcCCEEcc---------HHHHH---
Confidence            4445555443 689999999999999999999999999 899999999999999999985331         12222   


Q ss_pred             cCCCccEEEEccCCHHHHHHH-HHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcHH--HHHH
Q 016507          269 TDGGADYCFECVGLASLVQEA-YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIP--ILLK  345 (388)
Q Consensus       269 ~~g~~dvvid~~g~~~~~~~~-~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~--~~~~  345 (388)
                        .++|+||+|+|....+... +..++++ |.++.+|..    +..++...+..+.+++.+++....  ..+++  +.++
T Consensus       256 --~~aDVVI~atG~~~~i~~~~l~~mk~G-gilvnvG~~----~~eId~~~L~~~el~i~g~~~~~~--~~~~~~g~aI~  326 (413)
T cd00401         256 --KEGDIFVTTTGNKDIITGEHFEQMKDG-AIVCNIGHF----DVEIDVKGLKENAVEVVNIKPQVD--RYELPDGRRII  326 (413)
T ss_pred             --cCCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEeCCC----CCccCHHHHHhhccEEEEccCCcc--eEEcCCcchhh
Confidence              2689999999998877765 9999997 999999853    456888888888999988864321  22455  7899


Q ss_pred             HHhCCCC-CCCcceeee-----Eecc-hHHHHHHHHhcCce--eEEEEeeC
Q 016507          346 RYMDKEL-ELDKFVTHE-----MKFE-EINSAFDLLIKGKC--LRCVIWMG  387 (388)
Q Consensus       346 ~~~~~~~-~~~~~i~~~-----~~l~-~~~~A~~~~~~~~~--~kvvv~~~  387 (388)
                      ++.+|++ ++...++|.     ++|+ |+.++++.+.++..  .|+++.++
T Consensus       327 LLa~Grlvnl~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~  377 (413)
T cd00401         327 LLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK  377 (413)
T ss_pred             hhhCcCCCCCcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence            9999998 899999999     8999 99999999987654  37777653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=99.38  E-value=5.8e-12  Score=122.88  Aligned_cols=156  Identities=19%  Similarity=0.218  Sum_probs=115.9

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCC----------CccHHHHHHh
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCG----------DKSVSQIIID  267 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~----------~~~~~~~i~~  267 (388)
                      ..++++|+|+|+|++|+++++.|+.+|+ +|++++.++++++.++++|++.+ +|..+.+          ..++.+..++
T Consensus       162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        162 KVPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHH
Confidence            4579999999999999999999999999 89999999999999999999854 6553310          0123333333


Q ss_pred             h-cC--CCccEEEEccCCH-----HH-HHHHHHHhhcCCceEEEEccCCCCC-ccccCHHHHHh-cCcEEEEeeecCCCc
Q 016507          268 M-TD--GGADYCFECVGLA-----SL-VQEAYACCRKGWGKTIVLGVDQPGS-QLSLSSFEVLH-SGKILMGSLFGGLKA  336 (388)
Q Consensus       268 ~-~~--g~~dvvid~~g~~-----~~-~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~-~~~~i~g~~~~~~~~  336 (388)
                      . .+  +++|+||+|++.+     .. .+++++.++++ |.++.+|...++. ..+.+...++. +++++.|.+.  +. 
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpG-gvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n--~P-  316 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPG-SVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTD--LP-  316 (509)
T ss_pred             HHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCC-CEEEEEccCCCCCcccccCccceEeECCEEEEEeCC--Cc-
Confidence            3 33  2799999999963     24 48999999998 9999999743221 34555555665 7999998752  22 


Q ss_pred             cCcHHHHHHHHhCCCCCCCccee
Q 016507          337 KSDIPILLKRYMDKELELDKFVT  359 (388)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~i~  359 (388)
                      .+....+.+++.++.+++.++++
T Consensus       317 ~~~p~~As~lla~~~i~l~~lIt  339 (509)
T PRK09424        317 SRLPTQSSQLYGTNLVNLLKLLC  339 (509)
T ss_pred             hhHHHHHHHHHHhCCccHHHHhc
Confidence            23344689999999887776665

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.28  E-value=1.7e-12  Score=104.76  Aligned_cols=120  Identities=21%  Similarity=0.325  Sum_probs=77.8

Q ss_pred             cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC--CHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhc
Q 016507          245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG--LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  322 (388)
Q Consensus       245 lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g--~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  322 (388)
                      |||++++|+++   +++      ...++||+|||++|  +...+..+++++ ++ |+++.++.       .+.......+
T Consensus         1 LGAd~vidy~~---~~~------~~~~~~D~ViD~~g~~~~~~~~~~~~~l-~~-G~~v~i~~-------~~~~~~~~~~   62 (127)
T PF13602_consen    1 LGADEVIDYRD---TDF------AGPGGVDVVIDTVGQTGESLLDASRKLL-PG-GRVVSIGG-------DLPSFARRLK   62 (127)
T ss_dssp             CT-SEEEETTC---SHH------HTTS-EEEEEESS-CCHHHCGGGCCCTE-EE-EEEEEE-S-------HHHHHHHHHH
T ss_pred             CCcCEEecCCC---ccc------cCCCCceEEEECCCCccHHHHHHHHHHC-CC-CEEEEECC-------cccchhhhhc
Confidence            69999999987   555      22349999999999  655346777788 97 99999974       1111222122


Q ss_pred             CcEEEEeeecCCC----ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          323 GKILMGSLFGGLK----AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       323 ~~~i~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                      ...+....+....    ..+.++++.+++++|++.+  .+.++|||+++.+|++.+++++. +|+||
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~G~l~~--~i~~~f~l~~~~~A~~~l~~~~~~GKvVl  127 (127)
T PF13602_consen   63 GRSIRYSFLFSVDPNAIRAEALEELAELVAEGKLKP--PIDRVFPLEEAPEAHERLESGHARGKVVL  127 (127)
T ss_dssp             CHHCEEECCC-H--HHHHHHHHHHHHHHHHTTSS-----EEEEEEGGGHHHHHHHHHCT--SSEEEE
T ss_pred             ccceEEEEEEecCCCchHHHHHHHHHHHHHCCCeEE--eeccEECHHHHHHHHHHHHhCCCCCeEeC
Confidence            3333333322101    2345999999999996655  48899999999999999999876 59986

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.55  E-value=5.1e-07  Score=82.74  Aligned_cols=163  Identities=20%  Similarity=0.286  Sum_probs=100.3

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHcCCc-EEEEEcCCchHHHHHHHc----CCcEEEcCCCCCCccHHHHHHhhcC
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~-~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.++++++||.+|.|. |..++++++..+.. +|++++.+++..+.+++.    +.+.+-. ..   .++. .+ .+..
T Consensus        72 ~~~~~~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~-~~---~d~~-~l-~~~~  144 (272)
T PRK11873         72 LAELKPGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEF-RL---GEIE-AL-PVAD  144 (272)
T ss_pred             hccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEE-EE---cchh-hC-CCCC
Confidence            35688999999999887 88888888887753 799999999998888763    3322211 01   1121 11 1223


Q ss_pred             CCccEEEEcc------CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHH
Q 016507          271 GGADYCFECV------GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILL  344 (388)
Q Consensus       271 g~~dvvid~~------g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  344 (388)
                      +.||+|+...      .....+..+.+.|+++ |+++..+..... .  ++  ..+.+...+.+......   ....++.
T Consensus       145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpG-G~l~i~~~~~~~-~--~~--~~~~~~~~~~~~~~~~~---~~~~e~~  215 (272)
T PRK11873        145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPG-GRFAISDVVLRG-E--LP--EEIRNDAELYAGCVAGA---LQEEEYL  215 (272)
T ss_pred             CceeEEEEcCcccCCCCHHHHHHHHHHHcCCC-cEEEEEEeeccC-C--CC--HHHHHhHHHHhccccCC---CCHHHHH
Confidence            3799998543      2234589999999998 999987654321 1  22  11122222222211111   2455666


Q ss_pred             HHHhC-CCCCCCcceeeeEecchHHHHHHHH
Q 016507          345 KRYMD-KELELDKFVTHEMKFEEINSAFDLL  374 (388)
Q Consensus       345 ~~~~~-~~~~~~~~i~~~~~l~~~~~A~~~~  374 (388)
                      +++++ |-........+.++++++.++++.+
T Consensus       216 ~~l~~aGf~~v~i~~~~~~~l~~~~~~~~~~  246 (272)
T PRK11873        216 AMLAEAGFVDITIQPKREYRIPDAREFLEDW  246 (272)
T ss_pred             HHHHHCCCCceEEEeccceecccHHHHHHHh
Confidence            66665 4333333345668899999999988

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.48  E-value=1.1e-06  Score=85.93  Aligned_cols=108  Identities=19%  Similarity=0.241  Sum_probs=81.4

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCC----------CCccHHHHHHhh
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNC----------GDKSVSQIIIDM  268 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~----------~~~~~~~~i~~~  268 (388)
                      .++++|+|+|+|.+|++++++++.+|+ +|++++.++++++.++++|++.+ ++..+.          ..+++.+..++.
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            357999999999999999999999999 79999999999999999998763 332110          012333333443


Q ss_pred             cC---CCccEEEEcc---CCHH---HHHHHHHHhhcCCceEEEEccCCCC
Q 016507          269 TD---GGADYCFECV---GLAS---LVQEAYACCRKGWGKTIVLGVDQPG  309 (388)
Q Consensus       269 ~~---g~~dvvid~~---g~~~---~~~~~~~~l~~~~G~~v~~g~~~~~  309 (388)
                      ..   .++|+||+|+   |.+.   ..++.++.++++ +.+++++...++
T Consensus       241 ~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpG-svIVDlA~d~GG  289 (511)
T TIGR00561       241 FAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAG-SVIVDLAAEQGG  289 (511)
T ss_pred             HHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCC-CEEEEeeeCCCC
Confidence            33   2799999999   5432   467889999998 999999875433

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.40  E-value=1.2e-08  Score=98.77  Aligned_cols=163  Identities=17%  Similarity=0.189  Sum_probs=105.1

Q ss_pred             ccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccc
Q 016507           73 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS  152 (388)
Q Consensus        73 v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  152 (388)
                      .-|.|+++.+.+|+++.++     +|++.+.. ||+|..|    ++.|.....   .|...++                 
T Consensus        89 ~~~~~a~~hl~~Va~GldS-----~V~GE~qI-~gQvk~a----~~~a~~~~~---~g~~l~~-----------------  138 (417)
T TIGR01035        89 LTGESAVEHLFRVASGLDS-----MVVGETQI-LGQVKNA----YKVAQEEKT---VGKVLER-----------------  138 (417)
T ss_pred             cCchHHHHHHHHHHhhhhh-----hhcCChHH-HHHHHHH----HHHHHHcCC---chHHHHH-----------------
Confidence            3589999999999999887     55555556 8999988    555554443   3333344                 


Q ss_pred             ccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEE
Q 016507          153 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  232 (388)
Q Consensus       153 ~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~  232 (388)
                        .|++++.++. .+.. ...++. .  .+++. ..|...+.+..+..++++|+|+|+|.+|..+++.++..|+.+|+++
T Consensus       139 --lf~~a~~~~k-~vr~-~t~i~~-~--~vSv~-~~Av~la~~~~~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~  210 (417)
T TIGR01035       139 --LFQKAFSVGK-RVRT-ETDISA-G--AVSIS-SAAVELAERIFGSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIA  210 (417)
T ss_pred             --HHHHHHHHhh-hhhh-hcCCCC-C--CcCHH-HHHHHHHHHHhCCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEE
Confidence              8999988765 2221 011110 0  11111 1111112233445678999999999999999999999996699999


Q ss_pred             cCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHH
Q 016507          233 DVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  284 (388)
Q Consensus       233 ~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~  284 (388)
                      .++.++.+ +++.+|.. .++.     .++.+.+     .++|+||+|++.+.
T Consensus       211 ~rs~~ra~~la~~~g~~-~i~~-----~~l~~~l-----~~aDvVi~aT~s~~  252 (417)
T TIGR01035       211 NRTYERAEDLAKELGGE-AVKF-----EDLEEYL-----AEADIVISSTGAPH  252 (417)
T ss_pred             eCCHHHHHHHHHHcCCe-EeeH-----HHHHHHH-----hhCCEEEECCCCCC
Confidence            99888754 66677764 2221     1222222     17999999998764

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=98.33  E-value=1.4e-05  Score=76.74  Aligned_cols=103  Identities=21%  Similarity=0.233  Sum_probs=78.2

Q ss_pred             hHHHHHHhcCCC-CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHh
Q 016507          189 GVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       189 a~~~l~~~~~~~-~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~  267 (388)
                      +|.++.+..++. .|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|++ +.        .+.+.+  
T Consensus       198 ~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ra~~A~~~G~~-v~--------~l~eal--  265 (425)
T PRK05476        198 LLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPICALQAAMDGFR-VM--------TMEEAA--  265 (425)
T ss_pred             hHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCchhhHHHHhcCCE-ec--------CHHHHH--
Confidence            344444443544 89999999999999999999999999 899999988887666666654 22        122222  


Q ss_pred             hcCCCccEEEEccCCHHHHH-HHHHHhhcCCceEEEEccCC
Q 016507          268 MTDGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       268 ~~~g~~dvvid~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~  307 (388)
                         .++|+||+++|....+. ..+..++++ +.++..|...
T Consensus       266 ---~~aDVVI~aTG~~~vI~~~~~~~mK~G-ailiNvG~~d  302 (425)
T PRK05476        266 ---ELGDIFVTATGNKDVITAEHMEAMKDG-AILANIGHFD  302 (425)
T ss_pred             ---hCCCEEEECCCCHHHHHHHHHhcCCCC-CEEEEcCCCC
Confidence               17899999999887665 688889997 8888888643

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.26  E-value=1.9e-05  Score=72.99  Aligned_cols=111  Identities=19%  Similarity=0.272  Sum_probs=82.4

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .+.+|+|+|.|.+|..+++.++.+|+ +|+++++++++.+.++.+|+..+ ..     .++.+.+     .++|+||+|+
T Consensus       151 ~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~~~~~~~~~~~G~~~~-~~-----~~l~~~l-----~~aDiVI~t~  218 (296)
T PRK08306        151 HGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARKSAHLARITEMGLSPF-HL-----SELAEEV-----GKIDIIFNTI  218 (296)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeee-cH-----HHHHHHh-----CCCCEEEECC
Confidence            68999999999999999999999999 99999999888888888887533 11     1222222     1799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEE
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  328 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  328 (388)
                      +........++.++++ +.++.++..+++.+  +.  ..-.++++..+
T Consensus       219 p~~~i~~~~l~~~~~g-~vIIDla~~pggtd--~~--~a~~~Gv~~~~  261 (296)
T PRK08306        219 PALVLTKEVLSKMPPE-ALIIDLASKPGGTD--FE--YAEKRGIKALL  261 (296)
T ss_pred             ChhhhhHHHHHcCCCC-cEEEEEccCCCCcC--ee--ehhhCCeEEEE
Confidence            8765456778889997 99999987654432  22  22334555553

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.14  E-value=7.4e-08  Score=93.68  Aligned_cols=159  Identities=19%  Similarity=0.181  Sum_probs=96.9

Q ss_pred             cccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccc
Q 016507           74 LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSV  153 (388)
Q Consensus        74 ~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~  153 (388)
                      -|||+++-+.+|+++.++.-+|+-=+      |+.|.    ..++.|.....   .|...+                   
T Consensus        92 ~g~ea~~hl~~V~~GldS~V~GE~qI------lgQvk----~a~~~a~~~g~---~g~~l~-------------------  139 (423)
T PRK00045         92 EGEEAVRHLFRVASGLDSMVLGEPQI------LGQVK----DAYALAQEAGT---VGTILN-------------------  139 (423)
T ss_pred             CCHHHHHHHHHHHhhhhhhhcCChHH------HHHHH----HHHHHHHHcCC---chHHHH-------------------
Confidence            59999999999999998866666432      34433    11222222221   121122                   


Q ss_pred             cceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhc---CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEE
Q 016507          154 SSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRII  230 (388)
Q Consensus       154 g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi  230 (388)
                      +.|++.+.++        +.+..+.+..- .+.++++.++....   .-.++.+|+|+|+|.+|.++++.++..|+.+|+
T Consensus       140 ~lf~~a~~~~--------k~v~~~t~i~~-~~~Sv~~~Av~~a~~~~~~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~  210 (423)
T PRK00045        140 RLFQKAFSVA--------KRVRTETGIGA-GAVSVASAAVELAKQIFGDLSGKKVLVIGAGEMGELVAKHLAEKGVRKIT  210 (423)
T ss_pred             HHHHHHHHHH--------hhHhhhcCCCC-CCcCHHHHHHHHHHHhhCCccCCEEEEECchHHHHHHHHHHHHCCCCeEE
Confidence            2666655443        33332222221 13444454432221   235789999999999999999999999987899


Q ss_pred             EEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHH
Q 016507          231 GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  284 (388)
Q Consensus       231 ~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~  284 (388)
                      ++.++.++.+ +++.+|.+ +++.     .++.+.+     .++|+||+|++.+.
T Consensus       211 v~~r~~~ra~~la~~~g~~-~~~~-----~~~~~~l-----~~aDvVI~aT~s~~  254 (423)
T PRK00045        211 VANRTLERAEELAEEFGGE-AIPL-----DELPEAL-----AEADIVISSTGAPH  254 (423)
T ss_pred             EEeCCHHHHHHHHHHcCCc-EeeH-----HHHHHHh-----ccCCEEEECCCCCC
Confidence            9999888755 66777754 3322     1122222     27899999999764

>TIGR00936 ahcY adenosylhomocysteinase

Probab=98.13  E-value=4.4e-05  Score=72.97  Aligned_cols=101  Identities=23%  Similarity=0.285  Sum_probs=77.4

Q ss_pred             HHHHHHhcC-CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhh
Q 016507          190 VGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       190 ~~~l~~~~~-~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      +.++.+..+ ...|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+. +.+        +.+.+   
T Consensus       182 ~~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~r~~~A~~~G~~-v~~--------leeal---  248 (406)
T TIGR00936       182 IDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPIRALEAAMDGFR-VMT--------MEEAA---  248 (406)
T ss_pred             HHHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChhhHHHHHhcCCE-eCC--------HHHHH---
Confidence            344444434 3689999999999999999999999999 899999888877666667763 221        22222   


Q ss_pred             cCCCccEEEEccCCHHHHH-HHHHHhhcCCceEEEEccC
Q 016507          269 TDGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       269 ~~g~~dvvid~~g~~~~~~-~~~~~l~~~~G~~v~~g~~  306 (388)
                        .+.|++|++.|....+. ..+..++++ +.++.+|..
T Consensus       249 --~~aDVVItaTG~~~vI~~~~~~~mK~G-ailiN~G~~  284 (406)
T TIGR00936       249 --KIGDIFITATGNKDVIRGEHFENMKDG-AIVANIGHF  284 (406)
T ss_pred             --hcCCEEEECCCCHHHHHHHHHhcCCCC-cEEEEECCC
Confidence              26799999999988666 488889997 888888864

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.07  E-value=1.1e-05  Score=75.39  Aligned_cols=108  Identities=21%  Similarity=0.256  Sum_probs=79.2

Q ss_pred             CceEEcCCCCCccccccccchhhhhHHHHHHhcCC----CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH-
Q 016507          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANV----EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF-  239 (388)
Q Consensus       165 ~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~----~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~-  239 (388)
                      ...+++|+.+..+.++... +..+++.++ +.+..    .++.+|+|+|+|.+|..+++.++..|+.+|+++++++++. 
T Consensus       139 ~~a~~~~k~vr~et~i~~~-~~sv~~~Av-~~a~~~~~~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~  216 (311)
T cd05213         139 QKAIKVGKRVRTETGISRG-AVSISSAAV-ELAEKIFGNLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAE  216 (311)
T ss_pred             HHHHHHHHHHhhhcCCCCC-CcCHHHHHH-HHHHHHhCCccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence            3566778999888887766 566666654 33332    4789999999999999999999988877899999988765 


Q ss_pred             HHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHH
Q 016507          240 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  285 (388)
Q Consensus       240 ~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~  285 (388)
                      ++++++|+. +++.     .++.+.+.     .+|+||.|++.+..
T Consensus       217 ~la~~~g~~-~~~~-----~~~~~~l~-----~aDvVi~at~~~~~  251 (311)
T cd05213         217 ELAKELGGN-AVPL-----DELLELLN-----EADVVISATGAPHY  251 (311)
T ss_pred             HHHHHcCCe-EEeH-----HHHHHHHh-----cCCEEEECCCCCch
Confidence            677778874 3322     12333221     68999999998864

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function

Probab=97.98  E-value=0.00013  Score=66.94  Aligned_cols=138  Identities=9%  Similarity=0.066  Sum_probs=86.3

Q ss_pred             ceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcC---CCCCCEEEEEcc-chhHHHHHHHHH-HcCCcEE
Q 016507          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN---VEVGSTVVIFGL-GSIGLAVAEGAR-LCGATRI  229 (388)
Q Consensus       155 ~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~---~~~~~~VlI~Ga-g~vG~~ai~la~-~~g~~~V  229 (388)
                      .|-+|.++..+....-  .....++..-| -+.|+|. +.+...   .-..+.|||.+| +-+++.++..++ ..+..++
T Consensus        90 ~YN~Y~r~~~d~~y~~--~~e~~~~LlrP-Lf~Tsfl-l~d~l~~~~~~ga~~vvl~SASSKTA~glA~~L~~~~~~~~~  165 (314)
T PF11017_consen   90 IYNQYLRVSADPAYDP--EREDWQMLLRP-LFITSFL-LDDFLFDNDFFGAAQVVLSSASSKTAIGLAYCLKKQRGPPKV  165 (314)
T ss_pred             hhhceeecCCCcccCc--chhHHHHHHHH-HHHHHHH-HHHHhcccccCCccEEEEeccchHHHHHHHHHhhccCCCceE
Confidence            5666776665443311  11122222233 5566664 433322   223467777776 888888888877 4454499


Q ss_pred             EEEcCCchHHHHHHHcCC-cEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          230 IGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       230 i~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +++. |....++.+++|. +.|+.+++         +..+.....-+++|+.|.......+...+...--..+.+|..
T Consensus       166 vglT-S~~N~~Fve~lg~Yd~V~~Yd~---------i~~l~~~~~~v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~t  233 (314)
T PF11017_consen  166 VGLT-SARNVAFVESLGCYDEVLTYDD---------IDSLDAPQPVVIVDFAGNGEVLAALHEHLGDNLVYSCLVGAT  233 (314)
T ss_pred             EEEe-cCcchhhhhccCCceEEeehhh---------hhhccCCCCEEEEECCCCHHHHHHHHHHHhhhhhEEEEEEcc
Confidence            9996 5666679999997 77887765         333333467799999999987788888877742335566654

>PLN02494 adenosylhomocysteinase

Probab=97.97  E-value=7.7e-05  Score=72.04  Aligned_cols=101  Identities=18%  Similarity=0.232  Sum_probs=79.2

Q ss_pred             HHHHHHhcCC-CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhh
Q 016507          190 VGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       190 ~~~l~~~~~~-~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      +.++.+..++ -.|++|+|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|+..+         .+.+.+.  
T Consensus       241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp~r~~eA~~~G~~vv---------~leEal~--  308 (477)
T PLN02494        241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDPICALQALMEGYQVL---------TLEDVVS--  308 (477)
T ss_pred             HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhHHHHhcCCeec---------cHHHHHh--
Confidence            4445555454 679999999999999999999999999 89999998887666666776522         1222222  


Q ss_pred             cCCCccEEEEccCCHHH-HHHHHHHhhcCCceEEEEccC
Q 016507          269 TDGGADYCFECVGLASL-VQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       269 ~~g~~dvvid~~g~~~~-~~~~~~~l~~~~G~~v~~g~~  306 (388)
                         ..|+++++.|.... ....+..++++ +.++.+|..
T Consensus       309 ---~ADVVI~tTGt~~vI~~e~L~~MK~G-AiLiNvGr~  343 (477)
T PLN02494        309 ---EADIFVTTTGNKDIIMVDHMRKMKNN-AIVCNIGHF  343 (477)
T ss_pred             ---hCCEEEECCCCccchHHHHHhcCCCC-CEEEEcCCC
Confidence               67999999998764 37899999997 999999874

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=97.96  E-value=0.00016  Score=65.37  Aligned_cols=129  Identities=22%  Similarity=0.266  Sum_probs=83.8

Q ss_pred             ceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC
Q 016507          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       155 ~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      +|.+|.. +...++.+++++++..+. .+.+.. .+..+.  ..+.++++||-+|.|. |..++.+++ .|+.+|++++.
T Consensus        78 ~~~~~~~-~~~~~i~i~p~~afgtg~-h~tt~~-~l~~l~--~~~~~~~~VLDiGcGs-G~l~i~~~~-~g~~~v~giDi  150 (250)
T PRK00517         78 SWEDPPD-PDEINIELDPGMAFGTGT-HPTTRL-CLEALE--KLVLPGKTVLDVGCGS-GILAIAAAK-LGAKKVLAVDI  150 (250)
T ss_pred             CCcCCCC-CCeEEEEECCCCccCCCC-CHHHHH-HHHHHH--hhcCCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEEEC
Confidence            5666644 667788999988887654 221211 111121  1256889999999887 887776555 57757999999


Q ss_pred             CchHHHHHHHc----CCcEEEcCCCCCCccHHHHHHhhcCC--CccEEEEccCCH---HHHHHHHHHhhcCCceEEEEcc
Q 016507          235 ISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMTDG--GADYCFECVGLA---SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       235 ~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~i~~~~~g--~~dvvid~~g~~---~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ++...+.+++.    +....+.               ...+  .||+|+......   ..+..+.+.|+++ |.++..|.
T Consensus       151 s~~~l~~A~~n~~~~~~~~~~~---------------~~~~~~~fD~Vvani~~~~~~~l~~~~~~~Lkpg-G~lilsgi  214 (250)
T PRK00517        151 DPQAVEAARENAELNGVELNVY---------------LPQGDLKADVIVANILANPLLELAPDLARLLKPG-GRLILSGI  214 (250)
T ss_pred             CHHHHHHHHHHHHHcCCCceEE---------------EccCCCCcCEEEEcCcHHHHHHHHHHHHHhcCCC-cEEEEEEC
Confidence            99888777653    2210010               1112  599998766543   2356788889997 99998875


Q ss_pred             C
Q 016507          306 D  306 (388)
Q Consensus       306 ~  306 (388)
                      .
T Consensus       215 ~  215 (250)
T PRK00517        215 L  215 (250)
T ss_pred             c
Confidence            3

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.82  E-value=0.0004  Score=63.87  Aligned_cols=96  Identities=20%  Similarity=0.280  Sum_probs=71.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|+|+|.|.+|.+++..++.+|+ +|+++++++++.+.+..+|...+ ..     .++.+.+     .++|+||+++
T Consensus       150 ~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~~~~~~~~~~~g~~~~-~~-----~~l~~~l-----~~aDiVint~  217 (287)
T TIGR02853       150 HGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARSSADLARITEMGLIPF-PL-----NKLEEKV-----AEIDIVINTI  217 (287)
T ss_pred             CCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeee-cH-----HHHHHHh-----ccCCEEEECC
Confidence            57899999999999999999999999 99999999888777766665422 11     1222222     2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPG  309 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~  309 (388)
                      +....-...++.++++ ..++.++..+..
T Consensus       218 P~~ii~~~~l~~~k~~-aliIDlas~Pg~  245 (287)
T TIGR02853       218 PALVLTADVLSKLPKH-AVIIDLASKPGG  245 (287)
T ss_pred             ChHHhCHHHHhcCCCC-eEEEEeCcCCCC
Confidence            7664335677788886 888889875433

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.77  E-value=0.00011  Score=63.15  Aligned_cols=121  Identities=20%  Similarity=0.262  Sum_probs=86.7

Q ss_pred             CCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHH----HHHcC
Q 016507          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFG  246 (388)
Q Consensus       171 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~----~~~lg  246 (388)
                      +..++....-.++-+...|.  +.+...++++++||-+|.|+ |..++-+++..+  +|+.+++.++-.+.    ++.+|
T Consensus        44 d~~lpi~~gqtis~P~~vA~--m~~~L~~~~g~~VLEIGtGs-GY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg  118 (209)
T COG2518          44 DRALPIGCGQTISAPHMVAR--MLQLLELKPGDRVLEIGTGS-GYQAAVLARLVG--RVVSIERIEELAEQARRNLETLG  118 (209)
T ss_pred             CCcccCCCCceecCcHHHHH--HHHHhCCCCCCeEEEECCCc-hHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcC
Confidence            44455556666665656665  56788999999999999876 999999999888  89999998874444    45578


Q ss_pred             CcEEE-cCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          247 VTEFV-NSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       247 a~~v~-~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ...|. ...+ ...       .+... +||.|+-+.+.+..-+..++.|+++ |+++.--.
T Consensus       119 ~~nV~v~~gD-G~~-------G~~~~aPyD~I~Vtaaa~~vP~~Ll~QL~~g-Grlv~PvG  170 (209)
T COG2518         119 YENVTVRHGD-GSK-------GWPEEAPYDRIIVTAAAPEVPEALLDQLKPG-GRLVIPVG  170 (209)
T ss_pred             CCceEEEECC-ccc-------CCCCCCCcCEEEEeeccCCCCHHHHHhcccC-CEEEEEEc
Confidence            74432 2222 111       22333 8999998888877568899999998 99876543

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.74  E-value=0.00025  Score=67.76  Aligned_cols=98  Identities=20%  Similarity=0.227  Sum_probs=69.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+.. ++........+  ...+.+.+     .++|+||+|
T Consensus       166 ~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~~~~~~~l~~~~g~~v~~~~~~--~~~l~~~l-----~~aDvVI~a  237 (370)
T TIGR00518       166 EPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDINIDRLRQLDAEFGGRIHTRYSN--AYEIEDAV-----KRADLLIGA  237 (370)
T ss_pred             CCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcCceeEeccCC--HHHHHHHH-----ccCCEEEEc
Confidence            34569999999999999999999999 89999998888776654 45432222221  12232222     278999999


Q ss_pred             cC---C--HH-HHHHHHHHhhcCCceEEEEccCC
Q 016507          280 VG---L--AS-LVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       280 ~g---~--~~-~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      ++   .  +. .....++.++++ +.++.++...
T Consensus       238 ~~~~g~~~p~lit~~~l~~mk~g-~vIvDva~d~  270 (370)
T TIGR00518       238 VLIPGAKAPKLVSNSLVAQMKPG-AVIVDVAIDQ  270 (370)
T ss_pred             cccCCCCCCcCcCHHHHhcCCCC-CEEEEEecCC
Confidence            83   2  21 136778889997 9999988643

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.68  E-value=0.00045  Score=67.00  Aligned_cols=100  Identities=19%  Similarity=0.262  Sum_probs=75.3

Q ss_pred             HHHHHhcC-CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhc
Q 016507          191 GAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       191 ~~l~~~~~-~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      ..+.+..+ .-.|.+|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+..+         .+.+.++   
T Consensus       242 d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp~~a~~A~~~G~~~~---------~leell~---  308 (476)
T PTZ00075        242 DGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDPICALQAAMEGYQVV---------TLEDVVE---  308 (476)
T ss_pred             HHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHhcCceec---------cHHHHHh---
Confidence            33444433 3478999999999999999999999999 89999888777654555565421         2333221   


Q ss_pred             CCCccEEEEccCCHHHHH-HHHHHhhcCCceEEEEccC
Q 016507          270 DGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       270 ~g~~dvvid~~g~~~~~~-~~~~~l~~~~G~~v~~g~~  306 (388)
                        ..|+|+.+.|....+. ..+..++++ +.++.+|..
T Consensus       309 --~ADIVI~atGt~~iI~~e~~~~MKpG-AiLINvGr~  343 (476)
T PTZ00075        309 --TADIFVTATGNKDIITLEHMRRMKNN-AIVGNIGHF  343 (476)
T ss_pred             --cCCEEEECCCcccccCHHHHhccCCC-cEEEEcCCC
Confidence              6899999999877554 899999997 999999874

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.64  E-value=5.1e-05  Score=76.92  Aligned_cols=80  Identities=19%  Similarity=0.263  Sum_probs=59.6

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC---------------------chHHHHHHHcCCcEEEcCCCC
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---------------------SEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~---------------------~~~~~~~~~lga~~v~~~~~~  256 (388)
                      ..++|++|+|+|+|++|+++++.++..|+ +|++++..                     +.+++.++++|++..++....
T Consensus       133 ~~~~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~  211 (564)
T PRK12771        133 APDTGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVG  211 (564)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence            36789999999999999999999999999 79988743                     345677888999877764320


Q ss_pred             CCccH-HHHHHhhcCCCccEEEEccCCHH
Q 016507          257 GDKSV-SQIIIDMTDGGADYCFECVGLAS  284 (388)
Q Consensus       257 ~~~~~-~~~i~~~~~g~~dvvid~~g~~~  284 (388)
                        .++ .+.+    ..+||+||+++|...
T Consensus       212 --~~~~~~~~----~~~~D~Vi~AtG~~~  234 (564)
T PRK12771        212 --EDITLEQL----EGEFDAVFVAIGAQL  234 (564)
T ss_pred             --CcCCHHHH----HhhCCEEEEeeCCCC
Confidence              111 1222    127999999999764

>PRK08324 short chain dehydrogenase; Validated

Probab=97.63  E-value=0.00049  Score=71.42  Aligned_cols=137  Identities=19%  Similarity=0.254  Sum_probs=86.6

Q ss_pred             ceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEc
Q 016507          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (388)
Q Consensus       155 ~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~  233 (388)
                      ++++|..+++..++.+ +.++.+++.....          ......+|++|||+|+ |.+|..+++.+...|+ +|++++
T Consensus       386 ~~~~~~~l~~~~~f~i-~~~~~e~a~l~~~----------~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~  453 (681)
T PRK08324        386 AVGRYEPLSEQEAFDI-EYWSLEQAKLQRM----------PKPKPLAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLAD  453 (681)
T ss_pred             hcCCccCCChhhhcce-eeehhhhhhhhcC----------CCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEe
Confidence            6677877877777766 5666666642110          0122346789999986 9999999999999999 899999


Q ss_pred             CCchHHHHHHH-cCC-----cEEEcCCCCCCccHHHHHHhhc--CCCccEEEEccCC-----------------------
Q 016507          234 VISEKFEIGKR-FGV-----TEFVNSKNCGDKSVSQIIIDMT--DGGADYCFECVGL-----------------------  282 (388)
Q Consensus       234 ~~~~~~~~~~~-lga-----~~v~~~~~~~~~~~~~~i~~~~--~g~~dvvid~~g~-----------------------  282 (388)
                      +++++.+.+.. ++.     ....|-.+  ...+.+.+.+..  .|++|++|++.|.                       
T Consensus       454 r~~~~~~~~~~~l~~~~~v~~v~~Dvtd--~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~  531 (681)
T PRK08324        454 LDEEAAEAAAAELGGPDRALGVACDVTD--EAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNAT  531 (681)
T ss_pred             CCHHHHHHHHHHHhccCcEEEEEecCCC--HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhH
Confidence            98877655433 432     11234333  122333333221  2479999999982                       


Q ss_pred             --HHHHHHHHHHhhc---CCceEEEEccC
Q 016507          283 --ASLVQEAYACCRK---GWGKTIVLGVD  306 (388)
Q Consensus       283 --~~~~~~~~~~l~~---~~G~~v~~g~~  306 (388)
                        ...++.+++.++.   + |+++.++..
T Consensus       532 g~~~l~~~~~~~l~~~~~~-g~iV~vsS~  559 (681)
T PRK08324        532 GHFLVAREAVRIMKAQGLG-GSIVFIASK  559 (681)
T ss_pred             HHHHHHHHHHHHHHhcCCC-cEEEEECCc
Confidence              1223444556655   5 789988864

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.53  E-value=0.0004  Score=56.38  Aligned_cols=76  Identities=24%  Similarity=0.260  Sum_probs=55.3

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCc--EEEcCCCCCCccHHHHHHhhcCCCccE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~--~v~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      --.+.++||+|+|.+|.+++..+...|+++|+++.|+.+|.+.+. .++..  .++..++     +.+.+.     .+|+
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~-----~~~~~~-----~~Di   78 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLED-----LEEALQ-----EADI   78 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGG-----HCHHHH-----TESE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHH-----HHHHHh-----hCCe
Confidence            346889999999999999999999999988999999988876554 45332  2333332     222221     7999


Q ss_pred             EEEccCCHH
Q 016507          276 CFECVGLAS  284 (388)
Q Consensus       276 vid~~g~~~  284 (388)
                      ||.|++...
T Consensus        79 vI~aT~~~~   87 (135)
T PF01488_consen   79 VINATPSGM   87 (135)
T ss_dssp             EEE-SSTTS
T ss_pred             EEEecCCCC
Confidence            999998764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=97.34  E-value=0.0017  Score=59.96  Aligned_cols=96  Identities=20%  Similarity=0.274  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCcE-EEcCCCCCCccHHHHHHhhcCCCc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTE-FVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~~-v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      ..++++||-+|.|. |..++.+++ .|+.+|++++.++...+.+++.    +... +.....    +    ......++|
T Consensus       157 ~~~g~~VLDvGcGs-G~lai~aa~-~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~----~----~~~~~~~~f  226 (288)
T TIGR00406       157 DLKDKNVIDVGCGS-GILSIAALK-LGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLI----Y----LEQPIEGKA  226 (288)
T ss_pred             cCCCCEEEEeCCCh-hHHHHHHHH-cCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEec----c----cccccCCCc
Confidence            55789999999877 877777666 4666999999999877766652    2221 111111    1    111223489


Q ss_pred             cEEEEccCCH---HHHHHHHHHhhcCCceEEEEcc
Q 016507          274 DYCFECVGLA---SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       274 dvvid~~g~~---~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      |+|+......   ..+..+.+.|+++ |.++..|.
T Consensus       227 DlVvan~~~~~l~~ll~~~~~~Lkpg-G~li~sgi  260 (288)
T TIGR00406       227 DVIVANILAEVIKELYPQFSRLVKPG-GWLILSGI  260 (288)
T ss_pred             eEEEEecCHHHHHHHHHHHHHHcCCC-cEEEEEeC
Confidence            9998765443   3356778999997 99988775

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.23  E-value=0.0018  Score=56.94  Aligned_cols=79  Identities=22%  Similarity=0.289  Sum_probs=59.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCC----cEEEcCCCCCCccHHHHHHhhcCC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV----TEFVNSKNCGDKSVSQIIIDMTDG--G  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga----~~v~~~~~~~~~~~~~~i~~~~~g--~  272 (388)
                      .++.++|+|| +++|.+.++.+...|+ +|+.+.|..++++.+. +++.    ...+|-.+  .+.+.+.+..+...  .
T Consensus         5 ~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD--~~~~~~~i~~~~~~~g~   81 (246)
T COG4221           5 KGKVALITGASSGIGEATARALAEAGA-KVVLAARREERLEALADEIGAGAALALALDVTD--RAAVEAAIEALPEEFGR   81 (246)
T ss_pred             CCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccHHHHHHHHHhhccCceEEEeeccCC--HHHHHHHHHHHHHhhCc
Confidence            3467899998 9999999999999999 9999999999887655 4772    23455554  23444445544444  7


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+.++..|.
T Consensus        82 iDiLvNNAGl   91 (246)
T COG4221          82 IDILVNNAGL   91 (246)
T ss_pred             ccEEEecCCC
Confidence            9999998885

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=97.19  E-value=0.0058  Score=54.42  Aligned_cols=102  Identities=22%  Similarity=0.222  Sum_probs=66.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHc---CCcEEE--cCCCCCCccHHHHHHhhc--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF---GVTEFV--NSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~l---ga~~v~--~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      .+++|||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+ +.+   +.-+.+  |..+  ...+.+.+.+..  -+
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   80 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS--TESARNVIEKAAKVLN   80 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4679999987 9999999999999999 999999988776554 222   222222  2222  122333232221  13


Q ss_pred             CccEEEEccCCH-----------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          272 GADYCFECVGLA-----------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       272 ~~dvvid~~g~~-----------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ++|.++.+.+..                       ..++..+.++..+ |+++.++..
T Consensus        81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~ss~  137 (238)
T PRK05786         81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEG-SSIVLVSSM  137 (238)
T ss_pred             CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC-CEEEEEecc
Confidence            689999988742                       1134555666776 899988864

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=97.17  E-value=0.002  Score=54.83  Aligned_cols=78  Identities=21%  Similarity=0.275  Sum_probs=56.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC---cEEEcCCCCCCccHHHHHHhhcCC---Cc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV---TEFVNSKNCGDKSVSQIIIDMTDG---GA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga---~~v~~~~~~~~~~~~~~i~~~~~g---~~  273 (388)
                      .|.+|||+|+ +++|+..++-...+|- +||.+.+++++++.+++.-.   ..+.|-.+   .+-..++.++...   ..
T Consensus         4 tgnTiLITGG~sGIGl~lak~f~elgN-~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d---~~~~~~lvewLkk~~P~l   79 (245)
T COG3967           4 TGNTILITGGASGIGLALAKRFLELGN-TVIICGRNEERLAEAKAENPEIHTEVCDVAD---RDSRRELVEWLKKEYPNL   79 (245)
T ss_pred             cCcEEEEeCCcchhhHHHHHHHHHhCC-EEEEecCcHHHHHHHHhcCcchheeeecccc---hhhHHHHHHHHHhhCCch
Confidence            4789999975 9999999998888887 99999999999988876422   34555444   3322333333332   68


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      ++++++.|.
T Consensus        80 NvliNNAGI   88 (245)
T COG3967          80 NVLINNAGI   88 (245)
T ss_pred             heeeecccc
Confidence            999998884

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.02  E-value=0.0078  Score=56.20  Aligned_cols=103  Identities=21%  Similarity=0.304  Sum_probs=72.1

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHH----HcCCcEEEcCCCCCCccHHHHHHh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~~i~~  267 (388)
                      +.+...++++++||.+|+| .|..++.+++..+. ..|++++.+++..+.++    ++|.+.+....    .+..+.+..
T Consensus        72 ll~~L~i~~g~~VLDIG~G-tG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~----gD~~~~~~~  146 (322)
T PRK13943         72 FMEWVGLDKGMRVLEIGGG-TGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVC----GDGYYGVPE  146 (322)
T ss_pred             HHHhcCCCCCCEEEEEeCC-ccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEe----CChhhcccc
Confidence            3456678899999999997 49999999988763 26999999988766554    35665433222    122222211


Q ss_pred             hcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          268 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       268 ~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      .  +.||+|+.+.+........++.++++ |+++..
T Consensus       147 ~--~~fD~Ii~~~g~~~ip~~~~~~Lkpg-G~Lvv~  179 (322)
T PRK13943        147 F--APYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  179 (322)
T ss_pred             c--CCccEEEECCchHHhHHHHHHhcCCC-CEEEEE
Confidence            1  37999999888766566888999997 987763

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=96.99  E-value=0.01  Score=51.48  Aligned_cols=102  Identities=20%  Similarity=0.407  Sum_probs=69.5

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHH----HcC-CcEEEcCCCCCCccHHHHHHhh
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGK----RFG-VTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~----~lg-a~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      ....+.++++||.+|+|. |.+++.+++..+ ..+|++++.+++..+.++    .++ .+.+....    .+..+.+...
T Consensus        34 ~~l~~~~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~----~d~~~~l~~~  108 (198)
T PRK00377         34 SKLRLRKGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIK----GEAPEILFTI  108 (198)
T ss_pred             HHcCCCCcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEE----echhhhHhhc
Confidence            456788999999999988 999999988764 238999999998877654    355 23222111    1222222222


Q ss_pred             cCCCccEEEEccCC---HHHHHHHHHHhhcCCceEEEE
Q 016507          269 TDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       269 ~~g~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~  303 (388)
                       .+.||.||...+.   ...+..+.+.|+++ |+++..
T Consensus       109 -~~~~D~V~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~  144 (198)
T PRK00377        109 -NEKFDRIFIGGGSEKLKEIISASWEIIKKG-GRIVID  144 (198)
T ss_pred             -CCCCCEEEECCCcccHHHHHHHHHHHcCCC-cEEEEE
Confidence             2379999985543   34477888899997 998753

>TIGR00438 rrmJ cell division protein FtsJ

Probab=96.99  E-value=0.014  Score=50.21  Aligned_cols=101  Identities=19%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCC-Cc
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDG-GA  273 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g-~~  273 (388)
                      ...++++++||.+|+|+-+++.....+..+..+|++++.++.+    ...++..+ .|..+   ....+.+.+...+ ++
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~---~~~~~~l~~~~~~~~~   99 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTD---EEVLNKIRERVGDDKV   99 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCC---hhHHHHHHHHhCCCCc
Confidence            3457899999999988766544444444443489999998764    11233322 23332   3344455555545 89


Q ss_pred             cEEEE-cc----CC------------HHHHHHHHHHhhcCCceEEEEc
Q 016507          274 DYCFE-CV----GL------------ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       274 dvvid-~~----g~------------~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      |+|+. ..    |.            ...+..+.+.|+++ |+++...
T Consensus       100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lvi~~  146 (188)
T TIGR00438       100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPK-GNFVVKV  146 (188)
T ss_pred             cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCC-CEEEEEE
Confidence            99995 22    21            23477889999998 9998764

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=96.97  E-value=0.0073  Score=58.02  Aligned_cols=113  Identities=18%  Similarity=0.239  Sum_probs=75.9

Q ss_pred             cccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCcc
Q 016507          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  260 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~  260 (388)
                      ++..+-...+..+.+..+++++++||-+|.| .|..+..+++..|+ +|++++.+++..+.+++.....-+....   .+
T Consensus       147 ~L~~Aq~~k~~~l~~~l~l~~g~rVLDIGcG-~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~~l~v~~~~---~D  221 (383)
T PRK11705        147 TLEEAQEAKLDLICRKLQLKPGMRVLDIGCG-WGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCAGLPVEIRL---QD  221 (383)
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhccCeEEEEE---Cc
Confidence            3443444455556677889999999999875 47777888888898 9999999999999887643211111111   12


Q ss_pred             HHHHHHhhcCCCccEEEEc-----cCC---HHHHHHHHHHhhcCCceEEEEc
Q 016507          261 VSQIIIDMTDGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       261 ~~~~i~~~~~g~~dvvid~-----~g~---~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +.    ++ .+.||.|+..     ++.   ...+..+.+.|+++ |.++...
T Consensus       222 ~~----~l-~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpG-G~lvl~~  267 (383)
T PRK11705        222 YR----DL-NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPD-GLFLLHT  267 (383)
T ss_pred             hh----hc-CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence            21    11 2479998743     333   23478888999997 9988754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.90  E-value=0.012  Score=55.97  Aligned_cols=96  Identities=17%  Similarity=0.159  Sum_probs=69.8

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC---C-cEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG---V-TEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg---a-~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .+|||+|+|.+|..+++.+-..+-.+|++.+++.++.+.+....   . ...+|..+  .+.+.+.+    . ++|+||+
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d--~~al~~li----~-~~d~VIn   74 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAAD--VDALVALI----K-DFDLVIN   74 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccC--hHHHHHHH----h-cCCEEEE
Confidence            47999999999999999887777449999999999888876653   3 23566554  12233333    2 5699999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      |.+.......+-.|++.+ =.++.....
T Consensus        75 ~~p~~~~~~i~ka~i~~g-v~yvDts~~  101 (389)
T COG1748          75 AAPPFVDLTILKACIKTG-VDYVDTSYY  101 (389)
T ss_pred             eCCchhhHHHHHHHHHhC-CCEEEcccC
Confidence            999887666666777775 667777654

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=96.88  E-value=0.0056  Score=52.21  Aligned_cols=90  Identities=30%  Similarity=0.352  Sum_probs=62.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.+++....+.....+...         .++.+.+.     ..|+|+.+
T Consensus        34 l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~~~~~~~~~~~~---------~~l~ell~-----~aDiv~~~   98 (178)
T PF02826_consen   34 LRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKPEEGADEFGVEY---------VSLDELLA-----QADIVSLH   98 (178)
T ss_dssp             STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHHHHHHHHTTEEE---------SSHHHHHH-----H-SEEEE-
T ss_pred             cCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCChhhhccccccee---------eehhhhcc-----hhhhhhhh
Confidence            358999999999999999999999999 9999999887766444454421         23444433     47888887


Q ss_pred             cCCHH-----HHHHHHHHhhcCCceEEEEcc
Q 016507          280 VGLAS-----LVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       280 ~g~~~-----~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .+...     .-...+..++++ ..+|.++.
T Consensus        99 ~plt~~T~~li~~~~l~~mk~g-a~lvN~aR  128 (178)
T PF02826_consen   99 LPLTPETRGLINAEFLAKMKPG-AVLVNVAR  128 (178)
T ss_dssp             SSSSTTTTTSBSHHHHHTSTTT-EEEEESSS
T ss_pred             hccccccceeeeeeeeeccccc-eEEEeccc
Confidence            76321     124677888886 77777653

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=96.82  E-value=0.008  Score=54.12  Aligned_cols=80  Identities=21%  Similarity=0.288  Sum_probs=56.0

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c----CCc-EEE--cCCCCCCccHHHHHH-hh
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVT-EFV--NSKNCGDKSVSQIII-DM  268 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l----ga~-~v~--~~~~~~~~~~~~~i~-~~  268 (388)
                      ...+.++||+|| +++|...+..+...|+ +++.+.|+++|++.+.+ +    |.. .++  |-.+   .+-.+.+. ++
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~---~~~~~~l~~~l   78 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGY-NLILVARREDKLEALAKELEDKTGVEVEVIPADLSD---PEALERLEDEL   78 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCC---hhHHHHHHHHH
Confidence            346789999998 9999999998889999 99999999998876553 3    222 133  3333   22233333 22


Q ss_pred             cCC--CccEEEEccCC
Q 016507          269 TDG--GADYCFECVGL  282 (388)
Q Consensus       269 ~~g--~~dvvid~~g~  282 (388)
                      ...  .+|+.+++.|.
T Consensus        79 ~~~~~~IdvLVNNAG~   94 (265)
T COG0300          79 KERGGPIDVLVNNAGF   94 (265)
T ss_pred             HhcCCcccEEEECCCc
Confidence            222  79999999984

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.81  E-value=0.021  Score=48.60  Aligned_cols=92  Identities=18%  Similarity=0.239  Sum_probs=62.8

Q ss_pred             EEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       205 VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      |+|+|+ |.+|..+++.+...|+ +|+++.+++++.+.  ..+++.+. |..+   .   +.+.+... ++|+||.+.|.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~-~V~~~~R~~~~~~~--~~~~~~~~~d~~d---~---~~~~~al~-~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGH-EVTALVRSPSKAED--SPGVEIIQGDLFD---P---DSVKAALK-GADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTS-EEEEEESSGGGHHH--CTTEEEEESCTTC---H---HHHHHHHT-TSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCC-EEEEEecCchhccc--ccccccceeeehh---h---hhhhhhhh-hcchhhhhhhh
Confidence            789998 9999999999999998 99999999988776  44454332 2222   2   23333222 89999999984


Q ss_pred             ----HHHHHHHHHHhhcC-CceEEEEccC
Q 016507          283 ----ASLVQEAYACCRKG-WGKTIVLGVD  306 (388)
Q Consensus       283 ----~~~~~~~~~~l~~~-~G~~v~~g~~  306 (388)
                          .......++.++.. -.+++.++..
T Consensus        71 ~~~~~~~~~~~~~a~~~~~~~~~v~~s~~   99 (183)
T PF13460_consen   71 PPKDVDAAKNIIEAAKKAGVKRVVYLSSA   99 (183)
T ss_dssp             TTTHHHHHHHHHHHHHHTTSSEEEEEEET
T ss_pred             hcccccccccccccccccccccceeeecc
Confidence                23255666666553 0367776654

...

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.80  E-value=0.02  Score=49.17  Aligned_cols=112  Identities=18%  Similarity=0.152  Sum_probs=74.3

Q ss_pred             CCCEEEEEc-c-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCc-EEEcCCCC-CCccHHHHHHhhcCCCccE
Q 016507          201 VGSTVVIFG-L-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EFVNSKNC-GDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       201 ~~~~VlI~G-a-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~-~v~~~~~~-~~~~~~~~i~~~~~g~~dv  275 (388)
                      ....|||+| + |+||.+.+.-....|+ .|+++.+.-+..+-+. +.|.. .-+|-.+. ....+..++++...|+.|+
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~-~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~   84 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGY-LVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDL   84 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCe-EEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEE
Confidence            346799997 5 9999998888888899 9999999888776555 67752 23443331 0123555666667778999


Q ss_pred             EEEccCCHH--------------------------HHHHHHHHhhcCCceEEEEccCCCCCcccc
Q 016507          276 CFECVGLAS--------------------------LVQEAYACCRKGWGKTIVLGVDQPGSQLSL  314 (388)
Q Consensus       276 vid~~g~~~--------------------------~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~  314 (388)
                      .++..|.+.                          .-.....+++.. |+|+.+|...+-.+.+|
T Consensus        85 L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaK-GtIVnvgSl~~~vpfpf  148 (289)
T KOG1209|consen   85 LYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAK-GTIVNVGSLAGVVPFPF  148 (289)
T ss_pred             EEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHcc-ceEEEecceeEEeccch
Confidence            999776431                          011223456666 99999987543333333

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.0085  Score=54.91  Aligned_cols=78  Identities=18%  Similarity=0.277  Sum_probs=55.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHh---hcCCCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIID---MTDGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~---~~~g~~dv  275 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+...++..+ .|..+  .+.+.+.+.+   ...+.+|+
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~~g~id~   79 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGW-RVFATCRKEEDVAALEAEGLEAFQLDYAE--PESIAALVAQVLELSGGRLDA   79 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCceEEEccCCC--HHHHHHHHHHHHHHcCCCccE
Confidence            3568999997 9999999998888899 89999999888877766665433 34433  1223222322   23347999


Q ss_pred             EEEccC
Q 016507          276 CFECVG  281 (388)
Q Consensus       276 vid~~g  281 (388)
                      ++++.|
T Consensus        80 li~~Ag   85 (277)
T PRK05993         80 LFNNGA   85 (277)
T ss_pred             EEECCC
Confidence            999876

>PRK05693 short chain dehydrogenase; Provisional

Probab=96.76  E-value=0.0074  Score=55.12  Aligned_cols=77  Identities=21%  Similarity=0.346  Sum_probs=54.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcC--CCccEEEE
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADYCFE  278 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~--g~~dvvid  278 (388)
                      .++||+|+ |.+|...++.+...|+ +|+++++++++.+.+...+...+ .|..+  .+.+.+.+.+...  +++|++|+
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~vi~   78 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARKAEDVEALAAAGFTAVQLDVND--GAALARLAEELEAEHGGLDVLIN   78 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEEEE
Confidence            37899987 9999999998888899 89999988877776665555433 34443  1333333333322  37999999


Q ss_pred             ccCC
Q 016507          279 CVGL  282 (388)
Q Consensus       279 ~~g~  282 (388)
                      +.|.
T Consensus        79 ~ag~   82 (274)
T PRK05693         79 NAGY   82 (274)
T ss_pred             CCCC
Confidence            9983

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=96.73  E-value=0.023  Score=47.98  Aligned_cols=104  Identities=20%  Similarity=0.307  Sum_probs=70.4

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEEEcCCCCCCccHHHHHHhhcC
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ...++++|+.++=+|+|. |..+++++...-..+|++++++++..+..+    +||.+.+..-..    +-.+.+..+. 
T Consensus        28 s~L~~~~g~~l~DIGaGt-Gsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g----~Ap~~L~~~~-  101 (187)
T COG2242          28 SKLRPRPGDRLWDIGAGT-GSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEG----DAPEALPDLP-  101 (187)
T ss_pred             HhhCCCCCCEEEEeCCCc-cHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEec----cchHhhcCCC-
Confidence            456789999777778755 666778885544459999999998877665    578764322221    1223333221 


Q ss_pred             CCccEEEEccCC--HHHHHHHHHHhhcCCceEEEEccC
Q 016507          271 GGADYCFECVGL--ASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       271 g~~dvvid~~g~--~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       .+|.+|---|.  +..++.++..|+++ |++|.-...
T Consensus       102 -~~daiFIGGg~~i~~ile~~~~~l~~g-grlV~nait  137 (187)
T COG2242         102 -SPDAIFIGGGGNIEEILEAAWERLKPG-GRLVANAIT  137 (187)
T ss_pred             -CCCEEEECCCCCHHHHHHHHHHHcCcC-CeEEEEeec
Confidence             69999865443  24478999999998 999977653

>PRK12742 oxidoreductase; Provisional

Probab=96.72  E-value=0.035  Score=49.29  Aligned_cols=101  Identities=23%  Similarity=0.296  Sum_probs=62.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHH-HHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI-GKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~-~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+.+.+ ++++.+. ..++++..+ .|..+  ...+.+.+.+.  +++|++
T Consensus         5 ~~k~vlItGasggIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~~--~~id~l   79 (237)
T PRK12742          5 TGKKVLVLGGSRGIGAAIVRRFVTDGA-NVRFTYAGSKDAAERLAQETGATAVQTDSAD--RDAVIDVVRKS--GALDIL   79 (237)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHhCCeEEecCCCC--HHHHHHHHHHh--CCCcEE
Confidence            4679999987 9999999999988999 7777644 4444433 344555433 23322  12233333222  379999


Q ss_pred             EEccCCHH-------------------------HHHHHHHHhhcCCceEEEEccCC
Q 016507          277 FECVGLAS-------------------------LVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       277 id~~g~~~-------------------------~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      |++.|...                         ....++..+... |+++.++...
T Consensus        80 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-g~iv~isS~~  134 (237)
T PRK12742         80 VVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEG-GRIIIIGSVN  134 (237)
T ss_pred             EECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcC-CeEEEEeccc
Confidence            99987420                         012344455665 8999887643

>PRK14967 putative methyltransferase; Provisional

Probab=96.70  E-value=0.092  Score=46.46  Aligned_cols=99  Identities=19%  Similarity=0.186  Sum_probs=63.7

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHhhcC
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ....+.++++||-.|.|. |..++.+++. +..+|++++.+++..+.++.    .+....+..     .++.+.+   ..
T Consensus        30 ~~~~~~~~~~vLDlGcG~-G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~-----~d~~~~~---~~   99 (223)
T PRK14967         30 AAEGLGPGRRVLDLCTGS-GALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRR-----GDWARAV---EF   99 (223)
T ss_pred             HhcccCCCCeEEEecCCH-HHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEE-----Cchhhhc---cC
Confidence            345678889999999877 8888888875 55599999999987776554    343322221     1222221   12


Q ss_pred             CCccEEEEccCC---------------------------HHHHHHHHHHhhcCCceEEEEc
Q 016507          271 GGADYCFECVGL---------------------------ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       271 g~~dvvid~~g~---------------------------~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +.||+|+...+.                           ...+..+.+.|+++ |+++.+-
T Consensus       100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~g-G~l~~~~  159 (223)
T PRK14967        100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPG-GSLLLVQ  159 (223)
T ss_pred             CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCC-cEEEEEE
Confidence            389999874210                           11245677888887 8887653

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=96.68  E-value=0.031  Score=51.16  Aligned_cols=139  Identities=22%  Similarity=0.291  Sum_probs=79.6

Q ss_pred             ceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC
Q 016507          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       155 ~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      +|.+|..-..+..++|...+-+-    ......|++..=.....++++.+||=+|.|+ |.+++..+| +|+.+|+++|.
T Consensus       120 sw~~~~~~~~~~~i~lDPGlAFG----TG~HpTT~lcL~~Le~~~~~g~~vlDvGcGS-GILaIAa~k-LGA~~v~g~Di  193 (300)
T COG2264         120 SWREYPEPSDELNIELDPGLAFG----TGTHPTTSLCLEALEKLLKKGKTVLDVGCGS-GILAIAAAK-LGAKKVVGVDI  193 (300)
T ss_pred             CCccCCCCCCceEEEEccccccC----CCCChhHHHHHHHHHHhhcCCCEEEEecCCh-hHHHHHHHH-cCCceEEEecC
Confidence            45444322235566666665442    3334445544211123366899999888755 666665555 47779999999


Q ss_pred             CchHHHHH----HHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH---HHHHHHHHHhhcCCceEEEEccC
Q 016507          235 ISEKFEIG----KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA---SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       235 ~~~~~~~~----~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~---~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ++.-.+-+    +..++.... ...   ...  ......++.||+|+-.+=..   .........++++ |++++.|..
T Consensus       194 Dp~AV~aa~eNa~~N~v~~~~-~~~---~~~--~~~~~~~~~~DvIVANILA~vl~~La~~~~~~lkpg-g~lIlSGIl  265 (300)
T COG2264         194 DPQAVEAARENARLNGVELLV-QAK---GFL--LLEVPENGPFDVIVANILAEVLVELAPDIKRLLKPG-GRLILSGIL  265 (300)
T ss_pred             CHHHHHHHHHHHHHcCCchhh-hcc---ccc--chhhcccCcccEEEehhhHHHHHHHHHHHHHHcCCC-ceEEEEeeh
Confidence            88544433    334554211 110   000  11112224899998876443   2246778889997 999999864

>PRK04148 hypothetical protein; Provisional

Probab=96.65  E-value=0.034  Score=44.59  Aligned_cols=86  Identities=20%  Similarity=0.262  Sum_probs=59.9

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      ..++.+|+++|.| .|...++.+...|. .|+++|.++...+.++..+.+.+.+.--  ..++  .+.    +++|++..
T Consensus        14 ~~~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~~~~~v~dDlf--~p~~--~~y----~~a~liys   83 (134)
T PRK04148         14 KGKNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEKAVEKAKKLGLNAFVDDLF--NPNL--EIY----KNAKLIYS   83 (134)
T ss_pred             cccCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhCCeEEECcCC--CCCH--HHH----hcCCEEEE
Confidence            3456789999998 78755555557798 9999999999999999888766554211  1222  111    28999999


Q ss_pred             ccCCHHHHHHHHHHhhc
Q 016507          279 CVGLASLVQEAYACCRK  295 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~  295 (388)
                      +-..++ ++..+..++.
T Consensus        84 irpp~e-l~~~~~~la~   99 (134)
T PRK04148         84 IRPPRD-LQPFILELAK   99 (134)
T ss_pred             eCCCHH-HHHHHHHHHH
Confidence            999888 5444444443

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.61  E-value=0.019  Score=50.15  Aligned_cols=101  Identities=14%  Similarity=0.167  Sum_probs=66.8

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQI  264 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~  264 (388)
                      +.+...++++++||-+|.|. |..++.+++..+ ..+|++++.+++-.+.+++    ++..   .++..+-      .+.
T Consensus        64 ~~~~l~~~~~~~VLDiG~Gs-G~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~------~~~  136 (205)
T PRK13944         64 MCELIEPRPGMKILEVGTGS-GYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG------KRG  136 (205)
T ss_pred             HHHhcCCCCCCEEEEECcCc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc------ccC
Confidence            45667788999999998765 777777777664 2289999999876665543    4432   2232211      111


Q ss_pred             HHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          265 IIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       265 i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      +.  ..+.||+|+-+..........++.|+++ |+++..
T Consensus       137 ~~--~~~~fD~Ii~~~~~~~~~~~l~~~L~~g-G~lvi~  172 (205)
T PRK13944        137 LE--KHAPFDAIIVTAAASTIPSALVRQLKDG-GVLVIP  172 (205)
T ss_pred             Cc--cCCCccEEEEccCcchhhHHHHHhcCcC-cEEEEE
Confidence            11  1238999987766555467888999998 998754

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=96.61  E-value=0.0045  Score=54.06  Aligned_cols=113  Identities=19%  Similarity=0.250  Sum_probs=70.3

Q ss_pred             ccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCc-EEEEEcCCchHHHHHH----HcCCcEE-EcC
Q 016507          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGK----RFGVTEF-VNS  253 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~-~Vi~~~~~~~~~~~~~----~lga~~v-~~~  253 (388)
                      ..++.+...|.  +.+.+.+++|++||-+|+|. |..++.+++..|.. +|+.++..++-.+.++    .++.+.| +..
T Consensus        53 ~~is~P~~~a~--~l~~L~l~pg~~VLeIGtGs-GY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~  129 (209)
T PF01135_consen   53 QTISAPSMVAR--MLEALDLKPGDRVLEIGTGS-GYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVV  129 (209)
T ss_dssp             EEE--HHHHHH--HHHHTTC-TT-EEEEES-TT-SHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEE
T ss_pred             eechHHHHHHH--HHHHHhcCCCCEEEEecCCC-cHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEE
Confidence            33443434443  56778899999999999865 88888888877642 6999998887555444    4565432 222


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      .+   .  ..-+.  ..++||.|+-+.+.+..-...++.|+++ |+++.-
T Consensus       130 gd---g--~~g~~--~~apfD~I~v~~a~~~ip~~l~~qL~~g-GrLV~p  171 (209)
T PF01135_consen  130 GD---G--SEGWP--EEAPFDRIIVTAAVPEIPEALLEQLKPG-GRLVAP  171 (209)
T ss_dssp             S----G--GGTTG--GG-SEEEEEESSBBSS--HHHHHTEEEE-EEEEEE
T ss_pred             cc---h--hhccc--cCCCcCEEEEeeccchHHHHHHHhcCCC-cEEEEE
Confidence            22   1  11111  1128999998888776567899999998 999874

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.60  E-value=0.01  Score=59.17  Aligned_cols=73  Identities=22%  Similarity=0.230  Sum_probs=55.0

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      +.++++|+|+|.|.+|++++++++..|+ +|++++..+.+.+.++++|+..+. ...     ..+.+.     .+|+|+.
T Consensus         9 ~~~~~~v~V~G~G~sG~aa~~~L~~~G~-~v~~~D~~~~~~~~l~~~g~~~~~-~~~-----~~~~l~-----~~D~VV~   76 (488)
T PRK03369          9 LLPGAPVLVAGAGVTGRAVLAALTRFGA-RPTVCDDDPDALRPHAERGVATVS-TSD-----AVQQIA-----DYALVVT   76 (488)
T ss_pred             ccCCCeEEEEcCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHhCCCEEEc-Ccc-----hHhHhh-----cCCEEEE
Confidence            5578999999999999999999999999 999999776666667777875432 111     112221     5799999


Q ss_pred             ccCCH
Q 016507          279 CVGLA  283 (388)
Q Consensus       279 ~~g~~  283 (388)
                      +.|.+
T Consensus        77 SpGi~   81 (488)
T PRK03369         77 SPGFR   81 (488)
T ss_pred             CCCCC
Confidence            88865

>PRK08177 short chain dehydrogenase; Provisional

Probab=96.58  E-value=0.014  Score=51.64  Aligned_cols=77  Identities=14%  Similarity=0.193  Sum_probs=51.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE--EcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF--VNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v--~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      .+|+|+|+ |.+|...++.+...|+ +|+++++++++.+.++.++-...  .|-.+  .+.+.+.+..+..+++|++|.+
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~id~vi~~   78 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGPQQDTALQALPGVHIEKLDMND--PASLDQLLQRLQGQRFDLLFVN   78 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCCcchHHHHhccccceEEcCCCC--HHHHHHHHHHhhcCCCCEEEEc
Confidence            46899987 9999998888888899 99999988876655554432222  23333  1223333333333379999998


Q ss_pred             cCC
Q 016507          280 VGL  282 (388)
Q Consensus       280 ~g~  282 (388)
                      .|.
T Consensus        79 ag~   81 (225)
T PRK08177         79 AGI   81 (225)
T ss_pred             Ccc
Confidence            764

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=96.57  E-value=0.0077  Score=52.92  Aligned_cols=101  Identities=17%  Similarity=0.255  Sum_probs=67.8

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i  265 (388)
                      +.....++++++||-+|+|. |..+..+++..+. .+|++++.+++..+.+++    +|...  ++..+.      .+..
T Consensus        68 ~~~~l~~~~g~~VLdIG~Gs-G~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~------~~~~  140 (212)
T PRK13942         68 MCELLDLKEGMKVLEIGTGS-GYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDG------TLGY  140 (212)
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCc------ccCC
Confidence            45677889999999998765 6677777777653 289999999887766654    34432  222111      0000


Q ss_pred             HhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          266 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                        ...+.||+|+-...........++.|+++ |+++..
T Consensus       141 --~~~~~fD~I~~~~~~~~~~~~l~~~Lkpg-G~lvi~  175 (212)
T PRK13942        141 --EENAPYDRIYVTAAGPDIPKPLIEQLKDG-GIMVIP  175 (212)
T ss_pred             --CcCCCcCEEEECCCcccchHHHHHhhCCC-cEEEEE
Confidence              01138999976555555467889999998 998765

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=96.56  E-value=0.0091  Score=46.30  Aligned_cols=93  Identities=22%  Similarity=0.291  Sum_probs=61.4

Q ss_pred             CCCEEEEEccchhHHHHHHHHH-HcCCcEEEEEcCCchHHHHHHHcC----C-cEE-EcCCCCCCccHHHHHHhhcCCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFG----V-TEF-VNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~-~~g~~~Vi~~~~~~~~~~~~~~lg----a-~~v-~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      |+.+||-+|.|. |..++.+++ ..++ +|++++.+++..+.+++.-    . +.+ +-..+     + . ......++|
T Consensus         1 p~~~vLDlGcG~-G~~~~~l~~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d-----~-~-~~~~~~~~~   71 (112)
T PF12847_consen    1 PGGRVLDLGCGT-GRLSIALARLFPGA-RVVGVDISPEMLEIARERAAEEGLSDRITFVQGD-----A-E-FDPDFLEPF   71 (112)
T ss_dssp             TTCEEEEETTTT-SHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESC-----C-H-GGTTTSSCE
T ss_pred             CCCEEEEEcCcC-CHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECc-----c-c-cCcccCCCC
Confidence            678999998866 777778887 4677 8999999999888776532    1 211 22222     2 1 111112279


Q ss_pred             cEEEEcc-CC---H------HHHHHHHHHhhcCCceEEEE
Q 016507          274 DYCFECV-GL---A------SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       274 dvvid~~-g~---~------~~~~~~~~~l~~~~G~~v~~  303 (388)
                      |+|+... ..   .      ..++.+.+.|+++ |+++.-
T Consensus        72 D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~lvi~  110 (112)
T PF12847_consen   72 DLVICSGFTLHFLLPLDERRRVLERIRRLLKPG-GRLVIN  110 (112)
T ss_dssp             EEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             CEEEECCCccccccchhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            9999876 21   1      2267888999997 888753

...

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=96.55  E-value=0.048  Score=45.20  Aligned_cols=109  Identities=18%  Similarity=0.251  Sum_probs=66.3

Q ss_pred             HHHhcC-CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC
Q 016507          193 AWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       193 l~~~~~-~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      +.+..+ .-.|.+++|.|-|.+|.-.++.++.+|+ +|++++.++-+.-.+..-|.. +        ..+.+.+     .
T Consensus        13 i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi~alqA~~dGf~-v--------~~~~~a~-----~   77 (162)
T PF00670_consen   13 IMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPIRALQAAMDGFE-V--------MTLEEAL-----R   77 (162)
T ss_dssp             HHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHHHHHHHHHTT-E-E--------E-HHHHT-----T
T ss_pred             HHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChHHHHHhhhcCcE-e--------cCHHHHH-----h
Confidence            334434 4578999999999999999999999999 999999988765555444553 2        1233322     2


Q ss_pred             CccEEEEccCCHHH-HHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHh
Q 016507          272 GADYCFECVGLASL-VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH  321 (388)
Q Consensus       272 ~~dvvid~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~  321 (388)
                      ..|++|.++|.... ..+.++.|+.+ ..+...|.    .+..++...+-.
T Consensus        78 ~adi~vtaTG~~~vi~~e~~~~mkdg-ail~n~Gh----~d~Eid~~~L~~  123 (162)
T PF00670_consen   78 DADIFVTATGNKDVITGEHFRQMKDG-AILANAGH----FDVEIDVDALEA  123 (162)
T ss_dssp             T-SEEEE-SSSSSSB-HHHHHHS-TT-EEEEESSS----STTSBTHHHHHT
T ss_pred             hCCEEEECCCCccccCHHHHHHhcCC-eEEeccCc----CceeEeeccccc
Confidence            67999999998763 35788888885 55545554    334555555433

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK08017 oxidoreductase; Provisional

Probab=96.53  E-value=0.0093  Score=53.71  Aligned_cols=77  Identities=23%  Similarity=0.321  Sum_probs=54.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHH---HHHHhhcCCCccEEE
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVS---QIIIDMTDGGADYCF  277 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~---~~i~~~~~g~~dvvi  277 (388)
                      ++|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+++.++..+ .|..+  ...+.   +.+.+...+.+|.++
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~~~~~ii   79 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGY-RVLAACRKPDDVARMNSLGFTGILLDLDD--PESVERAADEVIALTDNRLYGLF   79 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHhHHHHhCCCeEEEeecCC--HHHHHHHHHHHHHhcCCCCeEEE
Confidence            47999998 9999999999988899 89999999888887777776543 33333  12222   223232334789999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      .+.|.
T Consensus        80 ~~ag~   84 (256)
T PRK08017         80 NNAGF   84 (256)
T ss_pred             ECCCC
Confidence            88763

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.52  E-value=0.026  Score=47.43  Aligned_cols=97  Identities=20%  Similarity=0.227  Sum_probs=64.5

Q ss_pred             cccccchhhhhHHHHHHhcCCCCCCEEEEEccch-hHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC
Q 016507          179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (388)
Q Consensus       179 aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~-vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  257 (388)
                      ....||...++...+.+...--.+.+|||+|+|. +|..++..++..|+ +|+++.++.                     
T Consensus        21 ~~~~p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r~~---------------------   78 (168)
T cd01080          21 PGFIPCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHSKT---------------------   78 (168)
T ss_pred             CCccCChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEECCc---------------------
Confidence            4556665555555343333345789999999986 59989999999999 788876542                     


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       .++.+.+.     .+|+||.+++.+..+..  +.++++ -.++.++..
T Consensus        79 -~~l~~~l~-----~aDiVIsat~~~~ii~~--~~~~~~-~viIDla~p  118 (168)
T cd01080          79 -KNLKEHTK-----QADIVIVAVGKPGLVKG--DMVKPG-AVVIDVGIN  118 (168)
T ss_pred             -hhHHHHHh-----hCCEEEEcCCCCceecH--HHccCC-eEEEEccCC
Confidence             12222222     68999999998763332  246665 677778763

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.50  E-value=0.035  Score=55.52  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=65.8

Q ss_pred             HhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c--------C------CcE-EEcCCCCC
Q 016507          195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F--------G------VTE-FVNSKNCG  257 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l--------g------a~~-v~~~~~~~  257 (388)
                      ...+.+.|.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+.+.. +        |      +.. ..|-.+  
T Consensus        73 ~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD--  149 (576)
T PLN03209         73 KELDTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK--  149 (576)
T ss_pred             cccccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC--
Confidence            3455678899999997 9999999998888899 89999998877654321 1        2      111 123322  


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHH---------------HHHHHHHHhhcC-CceEEEEccC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLAS---------------LVQEAYACCRKG-WGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~---------------~~~~~~~~l~~~-~G~~v~~g~~  306 (388)
                          .+.+.+.. +++|+||.+.|...               ....+++.+... .++||.++..
T Consensus       150 ----~esI~~aL-ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSi  209 (576)
T PLN03209        150 ----PDQIGPAL-GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSL  209 (576)
T ss_pred             ----HHHHHHHh-cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence                12233322 37999999987531               123334444332 2689988764

>PRK07326 short chain dehydrogenase; Provisional

Probab=96.48  E-value=0.043  Score=48.73  Aligned_cols=79  Identities=19%  Similarity=0.264  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCC---cEEE--cCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV---TEFV--NSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga---~~v~--~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ +.+..   -+.+  |-.+  ...+.+.+.+...  +
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNKGNVLGLAADVRD--EADVQRAVDAIVAAFG   81 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            4678999987 9999999988877899 899999887765443 33321   1122  3222  1333333333221  3


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus        82 ~~d~vi~~ag~   92 (237)
T PRK07326         82 GLDVLIANAGV   92 (237)
T ss_pred             CCCEEEECCCC
Confidence            79999998764

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.47  E-value=0.015  Score=52.79  Aligned_cols=94  Identities=18%  Similarity=0.231  Sum_probs=70.0

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-CCc-EEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-ga~-~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      ..+|.|+|+|.+|.-++.+|..+|+ +|...+.+..|+..+..+ +-. +.+-+..   ..+.+.+.     +.|++|.+
T Consensus       168 ~~kv~iiGGGvvgtnaAkiA~glgA-~Vtild~n~~rl~~ldd~f~~rv~~~~st~---~~iee~v~-----~aDlvIga  238 (371)
T COG0686         168 PAKVVVLGGGVVGTNAAKIAIGLGA-DVTILDLNIDRLRQLDDLFGGRVHTLYSTP---SNIEEAVK-----KADLVIGA  238 (371)
T ss_pred             CccEEEECCccccchHHHHHhccCC-eeEEEecCHHHHhhhhHhhCceeEEEEcCH---HHHHHHhh-----hccEEEEE
Confidence            4578899999999999999999999 999999999998888764 333 2222222   34444443     68999887


Q ss_pred             cCCH------HHHHHHHHHhhcCCceEEEEcc
Q 016507          280 VGLA------SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       280 ~g~~------~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +=.+      ...++.++.|+++ +.++.++.
T Consensus       239 VLIpgakaPkLvt~e~vk~MkpG-sVivDVAi  269 (371)
T COG0686         239 VLIPGAKAPKLVTREMVKQMKPG-SVIVDVAI  269 (371)
T ss_pred             EEecCCCCceehhHHHHHhcCCC-cEEEEEEE
Confidence            6322      2367889999997 99988875

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=96.46  E-value=0.011  Score=49.47  Aligned_cols=92  Identities=15%  Similarity=0.273  Sum_probs=61.5

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC--cEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga--~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|.|+|| |-+|...++=|+..|. .|+++.++++|....+..-+  .-++|..     .+++.+     .++|+||++.
T Consensus         2 KIaiIgAsG~~Gs~i~~EA~~RGH-eVTAivRn~~K~~~~~~~~i~q~Difd~~-----~~a~~l-----~g~DaVIsA~   70 (211)
T COG2910           2 KIAIIGASGKAGSRILKEALKRGH-EVTAIVRNASKLAARQGVTILQKDIFDLT-----SLASDL-----AGHDAVISAF   70 (211)
T ss_pred             eEEEEecCchhHHHHHHHHHhCCC-eeEEEEeChHhccccccceeecccccChh-----hhHhhh-----cCCceEEEec
Confidence            5889998 9999999999999999 99999999998765432211  0123221     122222     2899999998


Q ss_pred             CCH---------HHHHHHHHHhhc-CCceEEEEccC
Q 016507          281 GLA---------SLVQEAYACCRK-GWGKTIVLGVD  306 (388)
Q Consensus       281 g~~---------~~~~~~~~~l~~-~~G~~v~~g~~  306 (388)
                      +..         ...+.++..++. +.-++..+|+.
T Consensus        71 ~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGA  106 (211)
T COG2910          71 GAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGA  106 (211)
T ss_pred             cCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCc
Confidence            754         113345666665 22578888864

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.44  E-value=0.018  Score=55.78  Aligned_cols=80  Identities=15%  Similarity=0.120  Sum_probs=56.1

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcEEEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      ...--.+.+|||+|+|.+|.+++..+...|+.+++++.++.++.+.+ ..++-..++.        + +.+.+.. ..+|
T Consensus       175 ~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~--------~-~~l~~~l-~~aD  244 (414)
T PRK13940        175 QLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHY--------L-SELPQLI-KKAD  244 (414)
T ss_pred             HhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEec--------H-HHHHHHh-ccCC
Confidence            33345678999999999999999999999987899999988775544 4454212222        1 1122211 2699


Q ss_pred             EEEEccCCHHH
Q 016507          275 YCFECVGLASL  285 (388)
Q Consensus       275 vvid~~g~~~~  285 (388)
                      +||.|++.+..
T Consensus       245 iVI~aT~a~~~  255 (414)
T PRK13940        245 IIIAAVNVLEY  255 (414)
T ss_pred             EEEECcCCCCe
Confidence            99999998753

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.43  E-value=0.052  Score=47.65  Aligned_cols=103  Identities=17%  Similarity=0.204  Sum_probs=63.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc------hHH--HHHHHcCC----------------cEEEcCCCC
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS------EKF--EIGKRFGV----------------TEFVNSKNC  256 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~------~~~--~~~~~lga----------------~~v~~~~~~  256 (388)
                      +...|+|+|.|++|.+++..+-..|+.++..+|-+.      .|+  .++...|-                .+|.-.++ 
T Consensus        29 ~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~-  107 (263)
T COG1179          29 KQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND-  107 (263)
T ss_pred             hhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh-
Confidence            457899999999999999999999999988887554      111  11111221                11211121 


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCCHHHHHHHH-HHhhcCCceEEEEccCC
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAY-ACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~-~~l~~~~G~~v~~g~~~  307 (388)
                        --..+.+.++...+||+|+||+..-..-..++ .|.+.+ -.++..++..
T Consensus       108 --f~t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~k-i~vIss~Gag  156 (263)
T COG1179         108 --FITEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNK-IPVISSMGAG  156 (263)
T ss_pred             --hhCHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcC-CCEEeecccc
Confidence              11234455555569999999998765333334 455554 5677666543

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.42  E-value=0.0086  Score=50.51  Aligned_cols=101  Identities=18%  Similarity=0.157  Sum_probs=63.7

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc-CCCCC-------------CccHHHHHHh
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN-SKNCG-------------DKSVSQIIID  267 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~-~~~~~-------------~~~~~~~i~~  267 (388)
                      ..+|+|+|+|.+|+.|+.+++.+|+ +|+..+...++.+.+..++...+.. ..+..             .......+.+
T Consensus        20 p~~vvv~G~G~vg~gA~~~~~~lGa-~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~   98 (168)
T PF01262_consen   20 PAKVVVTGAGRVGQGAAEIAKGLGA-EVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAE   98 (168)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHTT--EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhHCCC-EEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHH
Confidence            4789999999999999999999999 8999999888888888777654322 11100             0112222222


Q ss_pred             hcCCCccEEEEccC--C---HH-HHHHHHHHhhcCCceEEEEcc
Q 016507          268 MTDGGADYCFECVG--L---AS-LVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       268 ~~~g~~dvvid~~g--~---~~-~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ... .+|+||-+.-  +   +. ...+.++.|+++ ..++.+..
T Consensus        99 ~i~-~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~g-svIvDis~  140 (168)
T PF01262_consen   99 FIA-PADIVIGNGLYWGKRAPRLVTEEMVKSMKPG-SVIVDISC  140 (168)
T ss_dssp             HHH-H-SEEEEHHHBTTSS---SBEHHHHHTSSTT-EEEEETTG
T ss_pred             HHh-hCcEEeeecccCCCCCCEEEEhHHhhccCCC-ceEEEEEe
Confidence            211 5788885331  1   11 135777888886 77777764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK06182 short chain dehydrogenase; Validated

Probab=96.41  E-value=0.016  Score=52.83  Aligned_cols=79  Identities=19%  Similarity=0.258  Sum_probs=54.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhc--CCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMT--DGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~--~g~~dvv  276 (388)
                      ++.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+...++.. ..|-.+  .+.+.+.+.+..  .+++|++
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~~~id~l   78 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVDKMEDLASLGVHPLSLDVTD--EASIKAAVDTIIAEEGRIDVL   78 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhCCCeEEEeeCCC--HHHHHHHHHHHHHhcCCCCEE
Confidence            3578999997 9999999998888899 9999999887776554445433 234333  133333333322  2379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.|.
T Consensus        79 i~~ag~   84 (273)
T PRK06182         79 VNNAGY   84 (273)
T ss_pred             EECCCc
Confidence            999874

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.38  E-value=0.019  Score=51.79  Aligned_cols=80  Identities=15%  Similarity=0.248  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c---CC-cEE--EcCCCCCCccHHHHHHhhc--
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F---GV-TEF--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l---ga-~~v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      ..+.+|||+|+ |.+|..++..+...|+ +|+++.+++++.+.+.. +   +. .++  .|-.+  .+++.+.+.+..  
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   83 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD--YQSIKAAVAHAETE   83 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHh
Confidence            35789999987 9999999999988999 89999988877654432 1   21 122  23322  123333333321  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|++|++.|.
T Consensus        84 ~~~~d~li~~ag~   96 (258)
T PRK06949         84 AGTIDILVNNSGV   96 (258)
T ss_pred             cCCCCEEEECCCC
Confidence            2378999999883

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.37  E-value=0.024  Score=50.62  Aligned_cols=77  Identities=19%  Similarity=0.328  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .+.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ .+...+ .|..+   ....+.+.+. .+++|++|
T Consensus         8 ~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~-~~~~d~vi   82 (245)
T PRK07060          8 SGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARNAAALDRLAGETGCEPLRLDVGD---DAAIRAALAA-AGAFDGLV   82 (245)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeEEEecCCC---HHHHHHHHHH-hCCCCEEE
Confidence            4679999997 9999999999998999 89999988876654433 444332 34333   2222222221 23799999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      ++.|.
T Consensus        83 ~~ag~   87 (245)
T PRK07060         83 NCAGI   87 (245)
T ss_pred             ECCCC
Confidence            98874

>PRK07806 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.055  Score=48.44  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=60.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch-HHHH----HHHcCCcE---EEcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFEI----GKRFGVTE---FVNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~-~~~~----~~~lga~~---v~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|...+..+...|+ +|+++.++.+ +.+.    ++..+...   ..|..+  .+++.+.+.+... 
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTD--EESVAALMDTAREE   81 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHh
Confidence            4678999997 9999999998888899 8888877643 2222    22223221   123333  1223333332222 


Q ss_pred             -CCccEEEEccCCH-------------------HHHHHHHHHhhcCCceEEEEcc
Q 016507          271 -GGADYCFECVGLA-------------------SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       271 -g~~dvvid~~g~~-------------------~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       +++|+++.+.+..                   ..++.+.+.+..+ |+++.++.
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~-~~iv~isS  135 (248)
T PRK07806         82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAG-SRVVFVTS  135 (248)
T ss_pred             CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCC-ceEEEEeC
Confidence             3689999887642                   2234455555555 88888865

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.34  E-value=0.049  Score=41.79  Aligned_cols=93  Identities=20%  Similarity=0.287  Sum_probs=59.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|||+|+|.+|..-++.+...|+ +|+++....   +..+  +.-... .+     .+.+.   +  .++++||-+.
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~~gA-~v~vis~~~---~~~~--~~i~~~-~~-----~~~~~---l--~~~~lV~~at   68 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLEAGA-KVTVISPEI---EFSE--GLIQLI-RR-----EFEED---L--DGADLVFAAT   68 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCCCTB-EEEEEESSE---HHHH--TSCEEE-ES-----S-GGG---C--TTESEEEE-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCch---hhhh--hHHHHH-hh-----hHHHH---H--hhheEEEecC
Confidence            57899999999999999999999999 899997764   2222  111121 11     22111   1  2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCc
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQ  311 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~  311 (388)
                      +.+..-+...+..+.. |.++.....+...+
T Consensus        69 ~d~~~n~~i~~~a~~~-~i~vn~~D~p~~~d   98 (103)
T PF13241_consen   69 DDPELNEAIYADARAR-GILVNVVDDPELCD   98 (103)
T ss_dssp             S-HHHHHHHHHHHHHT-TSEEEETT-CCCCS
T ss_pred             CCHHHHHHHHHHHhhC-CEEEEECCCcCCCe
Confidence            9888555666666665 89998876543333

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.33  E-value=0.017  Score=54.44  Aligned_cols=79  Identities=25%  Similarity=0.336  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcEE---EcCCCCCCccHHHHHHhh--cC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSVSQIIIDM--TD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~i~~~--~~  270 (388)
                      .+.+|||+|+ |++|.++++.+...|+ +|+.+++++++.+.+    ++.|.+..   .|-.+  .+.+.+.+.+.  ..
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   82 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTD--ADQVKALATQAASFG   82 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHhc
Confidence            5679999997 9999999999999999 899999988776533    23454432   23333  12222222221  12


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        83 g~iD~lVnnAG~   94 (330)
T PRK06139         83 GRIDVWVNNVGV   94 (330)
T ss_pred             CCCCEEEECCCc
Confidence            479999999873

>PRK07109 short chain dehydrogenase; Provisional

Probab=96.31  E-value=0.062  Score=50.73  Aligned_cols=79  Identities=19%  Similarity=0.136  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEE---EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v---~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.    ..|....   .|..+  .+.+.+.+.+..  -
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d--~~~v~~~~~~~~~~~   83 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGGEALAVVADVAD--AEAVQAAADRAEEEL   83 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCC--HHHHHHHHHHHHHHC
Confidence            4678999987 9999999998888999 8999998887655332    3344321   34333  122333222221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        84 g~iD~lInnAg~   95 (334)
T PRK07109         84 GPIDTWVNNAMV   95 (334)
T ss_pred             CCCCEEEECCCc
Confidence            379999999874

>PRK12829 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.02  Score=51.71  Aligned_cols=84  Identities=23%  Similarity=0.250  Sum_probs=54.2

Q ss_pred             cCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCc--E--EEcCCCCCCccHHHHHHhhc-
Q 016507          197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT--E--FVNSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       197 ~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~--~--v~~~~~~~~~~~~~~i~~~~-  269 (388)
                      ....++.++||+|+ |.+|..+++.+...|+ +|++++++++..+.+.+ ..-.  .  ..|..+  ...+.+.+.+.. 
T Consensus         6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~   82 (264)
T PRK12829          6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLPGAKVTATVADVAD--PAQVERVFDTAVE   82 (264)
T ss_pred             hhccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCceEEEEccCCC--HHHHHHHHHHHHH
Confidence            34457789999997 9999999999988899 89999988766554433 2211  1  223333  122222222221 


Q ss_pred             -CCCccEEEEccCCH
Q 016507          270 -DGGADYCFECVGLA  283 (388)
Q Consensus       270 -~g~~dvvid~~g~~  283 (388)
                       -+++|+||.+.|..
T Consensus        83 ~~~~~d~vi~~ag~~   97 (264)
T PRK12829         83 RFGGLDVLVNNAGIA   97 (264)
T ss_pred             HhCCCCEEEECCCCC
Confidence             13799999988753

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.27  E-value=0.022  Score=51.40  Aligned_cols=79  Identities=24%  Similarity=0.323  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE-EEcCCCCCCccHHHHHHhhcC--CCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~-v~~~~~~~~~~~~~~i~~~~~--g~~dv  275 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++++++.+.+.+ ..++... ..|..+  ...+.+.+.+...  +++|+
T Consensus         6 ~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06057          6 AGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDIDPEAGKAAADEVGGLFVPTDVTD--EDAVNALFDTAAETYGSVDI   82 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHcCCcEEEeeCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            5789999997 9999999999988899 899998887665433 3444322 234333  1222222222211  37899


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      ++.+.|.
T Consensus        83 vi~~ag~   89 (255)
T PRK06057         83 AFNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=96.26  E-value=0.085  Score=41.43  Aligned_cols=103  Identities=20%  Similarity=0.304  Sum_probs=67.8

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i~  266 (388)
                      +.....+.++++||-+|.|. |..+..+++..+..+|++++.++...+.+++    ++...  ++..+-   ...   +.
T Consensus        11 ~~~~~~~~~~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~---~~   83 (124)
T TIGR02469        11 TLSKLRLRPGDVLWDIGAGS-GSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDA---PEA---LE   83 (124)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccc---ccc---Ch
Confidence            34455677888999999877 8888888887654499999999987776653    34332  222111   110   11


Q ss_pred             hhcCCCccEEEEccCC---HHHHHHHHHHhhcCCceEEEEc
Q 016507          267 DMTDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       267 ~~~~g~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                       ...+.+|+|+...+.   ...++.+.+.|+++ |.++...
T Consensus        84 -~~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~li~~~  122 (124)
T TIGR02469        84 -DSLPEPDRVFIGGSGGLLQEILEAIWRRLRPG-GRIVLNA  122 (124)
T ss_pred             -hhcCCCCEEEECCcchhHHHHHHHHHHHcCCC-CEEEEEe
Confidence             112379999875432   23478899999997 9987653

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK12939 short chain dehydrogenase; Provisional

Probab=96.24  E-value=0.07  Score=47.67  Aligned_cols=80  Identities=20%  Similarity=0.205  Sum_probs=50.9

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .++.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.    +.+... +  .|-.+  .+.+.+.+.+... 
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   81 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLAD--PASVQRFFDAAAAA   81 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            35788999997 9999999998888999 8998888776554332    223221 2  23332  1222222222111 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|.+.|.
T Consensus        82 ~~~id~vi~~ag~   94 (250)
T PRK12939         82 LGGLDGLVNNAGI   94 (250)
T ss_pred             cCCCCEEEECCCC
Confidence             379999999885

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.24  E-value=0.047  Score=45.45  Aligned_cols=90  Identities=19%  Similarity=0.102  Sum_probs=58.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|||+|+|.+|..-++.+...|+ +|+++.  ++..+.+..++.-. ++.+.     +.+.    .-.++|+|+-++
T Consensus        12 ~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIs--p~~~~~l~~l~~i~-~~~~~-----~~~~----dl~~a~lViaaT   78 (157)
T PRK06719         12 HNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVS--PEICKEMKELPYIT-WKQKT-----FSND----DIKDAHLIYAAT   78 (157)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEc--CccCHHHHhccCcE-EEecc-----cChh----cCCCceEEEECC
Confidence            57899999999999998888888899 888884  43333344454211 22222     1111    012789999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.+. ++..+...+.. +.++....
T Consensus        79 ~d~e-~N~~i~~~a~~-~~~vn~~d  101 (157)
T PRK06719         79 NQHA-VNMMVKQAAHD-FQWVNVVS  101 (157)
T ss_pred             CCHH-HHHHHHHHHHH-CCcEEECC
Confidence            9887 77666666654 44555443

>PRK08618 ornithine cyclodeaminase; Validated

Probab=96.22  E-value=0.067  Score=50.28  Aligned_cols=94  Identities=18%  Similarity=0.104  Sum_probs=64.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHH-HHcCCcEEEEEcCCchHHHHH-HH----cCCcEEEcCCCCCCccHHHHHHhhcCCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVISEKFEIG-KR----FGVTEFVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la-~~~g~~~Vi~~~~~~~~~~~~-~~----lga~~v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +...+++|+|+|..|.+.+..+ ...++++|.+.++++++.+.+ +.    ++... ....     +..+.+     ...
T Consensus       125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~-~~~~-----~~~~~~-----~~a  193 (325)
T PRK08618        125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEI-YVVN-----SADEAI-----EEA  193 (325)
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcE-EEeC-----CHHHHH-----hcC
Confidence            4567899999999998776544 567888999999998876543 32    34331 1122     233333     278


Q ss_pred             cEEEEccCCHHHHHHHHHHhhcCCceEEEEccCC
Q 016507          274 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       274 dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      |+|+.|+++...+- . ..++++ -+++.+|...
T Consensus       194 DiVi~aT~s~~p~i-~-~~l~~G-~hV~~iGs~~  224 (325)
T PRK08618        194 DIIVTVTNAKTPVF-S-EKLKKG-VHINAVGSFM  224 (325)
T ss_pred             CEEEEccCCCCcch-H-HhcCCC-cEEEecCCCC
Confidence            99999998876333 3 888997 8888998754

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.21  E-value=0.025  Score=58.28  Aligned_cols=77  Identities=25%  Similarity=0.274  Sum_probs=56.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch---------------------HHHHHHHcCCcEEEcCCCCCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSKNCGDK  259 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~---------------------~~~~~~~lga~~v~~~~~~~~~  259 (388)
                      .+.+|+|+|+|+.|+.++..++..|+ +|+++++.+.                     ..++++++|++..++..-..+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~-~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGV-QVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCC-cEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            48999999999999999999999999 8988876652                     4567778898877665321111


Q ss_pred             cHHHHHHhhcCCCccEEEEccCCH
Q 016507          260 SVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       260 ~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      .+.+ +.    .+||.||.++|..
T Consensus       388 ~~~~-l~----~~~DaV~latGa~  406 (639)
T PRK12809        388 TFSD-LT----SEYDAVFIGVGTY  406 (639)
T ss_pred             CHHH-HH----hcCCEEEEeCCCC
Confidence            2221 11    2799999999874

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.21  E-value=0.072  Score=48.48  Aligned_cols=111  Identities=23%  Similarity=0.305  Sum_probs=68.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE-E----EcCCCCCCccHHHHHHhh--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F----VNSKNCGDKSVSQIIIDM--  268 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~-v----~~~~~~~~~~~~~~i~~~--  268 (388)
                      .+..|+|+|| +++|.+.+.-.-..|+ +++.+.+..++++.+    ++++... +    .|-.+  .++..+.+...  
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~-~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~--~~~~~~~~~~~~~   87 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGA-KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSD--EESVKKFVEWAIR   87 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCC-ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCC--HHHHHHHHHHHHH
Confidence            5788999998 9999987777777898 666666777666555    3444332 2    22222  12233232111  


Q ss_pred             cCCCccEEEEccCCH-------------------------HHHHHHHHHhhcCC-ceEEEEccCCCCCcccc
Q 016507          269 TDGGADYCFECVGLA-------------------------SLVQEAYACCRKGW-GKTIVLGVDQPGSQLSL  314 (388)
Q Consensus       269 ~~g~~dvvid~~g~~-------------------------~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~  314 (388)
                      .-|++|+.++..|-.                         .....++..|++.. |+|+.+++..+...+++
T Consensus        88 ~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~  159 (282)
T KOG1205|consen   88 HFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPF  159 (282)
T ss_pred             hcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCc
Confidence            124899999977632                         23455666666644 89999987654444433

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.21  E-value=0.021  Score=56.51  Aligned_cols=78  Identities=24%  Similarity=0.332  Sum_probs=55.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc---------------------hHHHHHHHcCCcEEEcCCCCCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS---------------------EKFEIGKRFGVTEFVNSKNCGDK  259 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~---------------------~~~~~~~~lga~~v~~~~~~~~~  259 (388)
                      .+.+|+|+|+|+.|+.++..++..|+ +|++++..+                     ...++++++|++..++..-.  .
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~-~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~--~  216 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGV-QVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVG--R  216 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeC--C
Confidence            57899999999999999999999999 788887654                     24567778898766554220  1


Q ss_pred             cHHHHHHhhcCCCccEEEEccCCHH
Q 016507          260 SVSQIIIDMTDGGADYCFECVGLAS  284 (388)
Q Consensus       260 ~~~~~i~~~~~g~~dvvid~~g~~~  284 (388)
                      ++  .+.+.. .++|.||.++|...
T Consensus       217 ~~--~~~~~~-~~~D~vilAtGa~~  238 (467)
T TIGR01318       217 DI--SLDDLL-EDYDAVFLGVGTYR  238 (467)
T ss_pred             cc--CHHHHH-hcCCEEEEEeCCCC
Confidence            11  111111 27999999999753

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=96.19  E-value=0.037  Score=51.61  Aligned_cols=91  Identities=25%  Similarity=0.416  Sum_probs=61.2

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      .+|.|+|.|.+|.+.+..++..|. .+|+++++++++.+.+++.|....+.      .+..+.+     ...|+||.|+.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~------~~~~~~~-----~~aDvViiavp   75 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVT------TSAAEAV-----KGADLVILCVP   75 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceec------CCHHHHh-----cCCCEEEECCC
Confidence            579999999999999888887774 38999999998888888877532111      1122222     26899999998


Q ss_pred             CHHH---HHHHHHHhhcCCceEEEEcc
Q 016507          282 LASL---VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       282 ~~~~---~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ....   +......++++ ..++.+|.
T Consensus        76 ~~~~~~v~~~l~~~l~~~-~iv~dvgs  101 (307)
T PRK07502         76 VGASGAVAAEIAPHLKPG-AIVTDVGS  101 (307)
T ss_pred             HHHHHHHHHHHHhhCCCC-CEEEeCcc
Confidence            7542   22333445554 55666654

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.15  E-value=0.05  Score=49.68  Aligned_cols=94  Identities=20%  Similarity=0.278  Sum_probs=66.7

Q ss_pred             cccchhhhhHHHHHHhcCC-CCCCEEEEEccch-hHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCC
Q 016507          181 LLSCGVSTGVGAAWRTANV-EVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~-~~~~~VlI~Gag~-vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  258 (388)
                      .+||+....+. +.+..++ -.|.+|+|+|.|. +|.-++.++...|+ +|+++.+..                      
T Consensus       137 ~~PcTp~ai~~-ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~ga-tVtv~~s~t----------------------  192 (286)
T PRK14175        137 FVPCTPLGIME-ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNA-SVTILHSRS----------------------  192 (286)
T ss_pred             CCCCcHHHHHH-HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCCc----------------------
Confidence            46766555555 3344443 4789999999865 99999999999999 888876421                      


Q ss_pred             ccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          259 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       259 ~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .++.+.++     .+|+||.++|.+..+..  +.++++ ..++.+|..
T Consensus       193 ~~l~~~~~-----~ADIVIsAvg~p~~i~~--~~vk~g-avVIDvGi~  232 (286)
T PRK14175        193 KDMASYLK-----DADVIVSAVGKPGLVTK--DVVKEG-AVIIDVGNT  232 (286)
T ss_pred             hhHHHHHh-----hCCEEEECCCCCcccCH--HHcCCC-cEEEEcCCC
Confidence            12333332     68999999999864444  457886 888899874

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.072  Score=48.24  Aligned_cols=79  Identities=22%  Similarity=0.287  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE-E--EcCCCCCCccHHHHHHhhc--CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~-v--~~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+ +.++... .  .|-.+  .+++.+.+.+..  .+..
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   81 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLGERARFIATDITD--DAAIERAVATVVARFGRV   81 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCeeEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999987 9999999998888999 999999887755443 3444321 1  23333  123333333321  1378


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++.+.|.
T Consensus        82 d~lv~~ag~   90 (261)
T PRK08265         82 DILVNLACT   90 (261)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.15  E-value=0.021  Score=49.74  Aligned_cols=92  Identities=16%  Similarity=0.034  Sum_probs=57.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch-H-HHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-K-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~-~-~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .+.+|||+|+|.+|...+..+...|+ +|+++.+... . .+++.. +. ..+..+.     +.+.-  +  .++|+||-
T Consensus         9 ~~k~vLVIGgG~va~~ka~~Ll~~ga-~V~VIs~~~~~~l~~l~~~-~~-i~~~~~~-----~~~~~--l--~~adlVia   76 (202)
T PRK06718          9 SNKRVVIVGGGKVAGRRAITLLKYGA-HIVVISPELTENLVKLVEE-GK-IRWKQKE-----FEPSD--I--VDAFLVIA   76 (202)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEcCCCCHHHHHHHhC-CC-EEEEecC-----CChhh--c--CCceEEEE
Confidence            57899999999999998888888898 8888865321 1 122222 21 1122222     11100  1  27899999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      |++.+. ++..+...... +.++.....
T Consensus        77 aT~d~e-lN~~i~~~a~~-~~lvn~~d~  102 (202)
T PRK06718         77 ATNDPR-VNEQVKEDLPE-NALFNVITD  102 (202)
T ss_pred             cCCCHH-HHHHHHHHHHh-CCcEEECCC
Confidence            999988 66666655564 667766543

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=96.14  E-value=0.087  Score=46.69  Aligned_cols=92  Identities=23%  Similarity=0.237  Sum_probs=60.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCc--EEEEEcCC----chH--------HHHHHHcCCcEEEcCCCCCCccHHHHH
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVI----SEK--------FEIGKRFGVTEFVNSKNCGDKSVSQII  265 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~--~Vi~~~~~----~~~--------~~~~~~lga~~v~~~~~~~~~~~~~~i  265 (388)
                      -.+.+|+|+|+|..|..++..+...|++  +++.++++    .++        .++++.++... .   +   .++.+.+
T Consensus        23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~-~---~---~~l~~~l   95 (226)
T cd05311          23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK-T---G---GTLKEAL   95 (226)
T ss_pred             ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc-c---c---CCHHHHH
Confidence            4568999999999999999988888997  89999998    343        33444443211 0   1   1343433


Q ss_pred             HhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEc
Q 016507          266 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      .     ++|++|.+++........++.+.++ ..+..+.
T Consensus        96 ~-----~~dvlIgaT~~G~~~~~~l~~m~~~-~ivf~ls  128 (226)
T cd05311          96 K-----GADVFIGVSRPGVVKKEMIKKMAKD-PIVFALA  128 (226)
T ss_pred             h-----cCCEEEeCCCCCCCCHHHHHhhCCC-CEEEEeC
Confidence            2     5899999997333124667777775 5555444

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.14  E-value=0.061  Score=49.47  Aligned_cols=44  Identities=27%  Similarity=0.229  Sum_probs=38.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~  243 (388)
                      ..+.+|+|+|+|++|.+++..+...|+++|++++++.+|.+.+.
T Consensus       125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la  168 (284)
T PRK12549        125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALA  168 (284)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence            35678999999999999999999999989999999988776543

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.14  E-value=0.068  Score=52.68  Aligned_cols=78  Identities=24%  Similarity=0.404  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH--H-HHHHHcCCcE-EEcCCCCCCccHHHHHHh-hc--CCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--F-EIGKRFGVTE-FVNSKNCGDKSVSQIIID-MT--DGG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~--~-~~~~~lga~~-v~~~~~~~~~~~~~~i~~-~~--~g~  272 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++.+..  . +...+++... ..|-.+   .+..+.+.+ ..  .++
T Consensus       209 ~g~~vlItGasggIG~~la~~l~~~Ga-~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~---~~~~~~~~~~~~~~~g~  284 (450)
T PRK08261        209 AGKVALVTGAARGIGAAIAEVLARDGA-HVVCLDVPAAGEALAAVANRVGGTALALDITA---PDAPARIAEHLAERHGG  284 (450)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCC---HHHHHHHHHHHHHhCCC
Confidence            5789999987 9999999999988999 88888774322  2 2333455432 234443   222222222 21  237


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|++|++.|.
T Consensus       285 id~vi~~AG~  294 (450)
T PRK08261        285 LDIVVHNAGI  294 (450)
T ss_pred             CCEEEECCCc
Confidence            9999999883

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.10  E-value=0.032  Score=50.56  Aligned_cols=79  Identities=22%  Similarity=0.220  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCc-EE--EcCCCCCCccHHHHHHhhc--CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EF--VNSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~-~v--~~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+ ++.. ..  .|-.+  .....+.+.+..  .+++
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   81 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRFGDHVLVVEGDVTS--YADNQRAVDQTVDAFGKL   81 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHhcCCC
Confidence            4678999987 9999999998888899 89999988877665543 3321 12  23222  122333333322  2379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        82 d~li~~ag~   90 (263)
T PRK06200         82 DCFVGNAGI   90 (263)
T ss_pred             CEEEECCCC
Confidence            999998873

>PRK06841 short chain dehydrogenase; Provisional

Probab=96.08  E-value=0.029  Score=50.51  Aligned_cols=79  Identities=23%  Similarity=0.290  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE----EEcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE----FVNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~----v~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+.+.++++..+....+....    ..|-.+  .+.+.+.+.+...  +++
T Consensus        14 ~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~~   90 (255)
T PRK06841         14 SGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSEDVAEVAAQLLGGNAKGLVCDVSD--SQSVEAAVAAVISAFGRI   90 (255)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4679999997 9999999988888899 8999988876655554432211    233332  1223332322211  378


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|.+.|.
T Consensus        91 d~vi~~ag~   99 (255)
T PRK06841         91 DILVNSAGV   99 (255)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK05872 short chain dehydrogenase; Provisional

Probab=96.03  E-value=0.034  Score=51.48  Aligned_cols=79  Identities=20%  Similarity=0.315  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCC--cEE---EcCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--TEF---VNSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga--~~v---~~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      .+.++||+|+ |++|..+++.+...|+ +|+++++++++.+.+ +.++.  ...   .|-.+  .+.+.+.+.+...  +
T Consensus         8 ~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          8 AGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTD--LAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCC--HHHHHHHHHHHHHHcC
Confidence            5789999987 9999999999988999 899999888776543 34442  111   34333  1223333332221  4


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            79999999985

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.03  E-value=0.052  Score=52.35  Aligned_cols=90  Identities=23%  Similarity=0.324  Sum_probs=58.6

Q ss_pred             EEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHH--cC--Cc-EEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          205 VVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR--FG--VT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~--lg--a~-~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      |+|+|+|.+|..+++.+....- .+|++.+++.++.+.+..  .+  +. ..+|..+      .+.+.++.. +.|+||+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~l~~~~~-~~dvVin   73 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVND------PESLAELLR-GCDVVIN   73 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTT------HHHHHHHHT-TSSEEEE
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCC------HHHHHHHHh-cCCEEEE
Confidence            7899999999999998876653 389999999998766543  22  22 2344443      222444433 5699999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEE
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~  302 (388)
                      |+|.......+-.|+..+ -.++.
T Consensus        74 ~~gp~~~~~v~~~~i~~g-~~yvD   96 (386)
T PF03435_consen   74 CAGPFFGEPVARACIEAG-VHYVD   96 (386)
T ss_dssp             -SSGGGHHHHHHHHHHHT--EEEE
T ss_pred             CCccchhHHHHHHHHHhC-CCeec
Confidence            999776566777777776 77877

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK07831 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.041  Score=49.77  Aligned_cols=81  Identities=23%  Similarity=0.322  Sum_probs=52.2

Q ss_pred             CCCCCEEEEEcc-c-hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-----cCCcEE----EcCCCCCCccHHHHHHh
Q 016507          199 VEVGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTEF----VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g-~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-----lga~~v----~~~~~~~~~~~~~~i~~  267 (388)
                      +..+.++||+|+ | ++|.++++.+...|+ +|+++++++++.+...+     ++...+    .|..+  ...+.+.+.+
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~   90 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS--EAQVDALIDA   90 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC--HHHHHHHHHH
Confidence            445789999986 6 799999999999999 89998887766543321     343222    23333  1222222222


Q ss_pred             hc--CCCccEEEEccCC
Q 016507          268 MT--DGGADYCFECVGL  282 (388)
Q Consensus       268 ~~--~g~~dvvid~~g~  282 (388)
                      ..  .+++|++|++.|.
T Consensus        91 ~~~~~g~id~li~~ag~  107 (262)
T PRK07831         91 AVERLGRLDVLVNNAGL  107 (262)
T ss_pred             HHHHcCCCCEEEECCCC
Confidence            21  1479999999984

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.01  E-value=0.068  Score=45.88  Aligned_cols=97  Identities=16%  Similarity=0.191  Sum_probs=61.4

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHhhcCCC
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      .++++.+||-+|.|. |..++.+++.. ++ +|++++.+++..+.+++    .+.+.+ ....   .+..+ +. . .+.
T Consensus        42 ~l~~g~~VLDiGcGt-G~~al~la~~~~~~-~V~giD~s~~~l~~A~~~~~~~~l~~i-~~~~---~d~~~-~~-~-~~~  112 (187)
T PRK00107         42 YLPGGERVLDVGSGA-GFPGIPLAIARPEL-KVTLVDSLGKKIAFLREVAAELGLKNV-TVVH---GRAEE-FG-Q-EEK  112 (187)
T ss_pred             hcCCCCeEEEEcCCC-CHHHHHHHHHCCCC-eEEEEeCcHHHHHHHHHHHHHcCCCCE-EEEe---ccHhh-CC-C-CCC
Confidence            355689999998754 55566666544 45 99999999887766653    454321 1111   12221 11 1 238


Q ss_pred             ccEEEEccCC--HHHHHHHHHHhhcCCceEEEEc
Q 016507          273 ADYCFECVGL--ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       273 ~dvvid~~g~--~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ||+|+-....  ...+..+.+.++++ |+++.+-
T Consensus       113 fDlV~~~~~~~~~~~l~~~~~~LkpG-G~lv~~~  145 (187)
T PRK00107        113 FDVVTSRAVASLSDLVELCLPLLKPG-GRFLALK  145 (187)
T ss_pred             ccEEEEccccCHHHHHHHHHHhcCCC-eEEEEEe
Confidence            9999864332  24467889999998 9998774

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=95.99  E-value=0.069  Score=47.33  Aligned_cols=105  Identities=21%  Similarity=0.245  Sum_probs=72.4

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~  267 (388)
                      +...+++.+|++|+=.|.|+ |.+++-+|++.|- .+|+..+..+++.+.+++    +|....+....   .+..+.+-.
T Consensus        86 I~~~~gi~pg~rVlEAGtGS-G~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~---~Dv~~~~~~  161 (256)
T COG2519          86 IVARLGISPGSRVLEAGTGS-GALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKL---GDVREGIDE  161 (256)
T ss_pred             HHHHcCCCCCCEEEEcccCc-hHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEe---ccccccccc
Confidence            34568899999999988766 8888888987764 599999998888877664    34433222221   222222211


Q ss_pred             hcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          268 MTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       268 ~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                         ..||.||==...+ ..++.+.+.|.++ |.++.|-.
T Consensus       162 ---~~vDav~LDmp~PW~~le~~~~~Lkpg-g~~~~y~P  196 (256)
T COG2519         162 ---EDVDAVFLDLPDPWNVLEHVSDALKPG-GVVVVYSP  196 (256)
T ss_pred             ---cccCEEEEcCCChHHHHHHHHHHhCCC-cEEEEEcC
Confidence               1788885444444 5588999999998 99998853

>PRK07825 short chain dehydrogenase; Provisional

Probab=95.98  E-value=0.039  Score=50.29  Aligned_cols=78  Identities=24%  Similarity=0.272  Sum_probs=51.7

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcC-CcE-EEcCCCCCCccHHHHHHhhcC--CCccE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG-VTE-FVNSKNCGDKSVSQIIIDMTD--GGADY  275 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lg-a~~-v~~~~~~~~~~~~~~i~~~~~--g~~dv  275 (388)
                      +.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+ +.++ +.. ..|-.+  .+++.+.+.+...  ++.|+
T Consensus         5 ~~~ilVtGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   81 (273)
T PRK07825          5 GKVVAITGGARGIGLATARALAALGA-RVAIGDLDEALAKETAAELGLVVGGPLDVTD--PASFAAFLDAVEADLGPIDV   81 (273)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            578999997 9999999988888899 899988888776543 3344 222 234333  1333333333222  47999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      +|++.|.
T Consensus        82 li~~ag~   88 (273)
T PRK07825         82 LVNNAGV   88 (273)
T ss_pred             EEECCCc
Confidence            9999874

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.97  E-value=0.021  Score=50.27  Aligned_cols=101  Identities=18%  Similarity=0.210  Sum_probs=65.7

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i  265 (388)
                      +.+...++++++||-+|.|. |..++.+++..+. .+|++++.+++..+.+++    +|.+.  ++..+      ..+.+
T Consensus        69 ~~~~l~~~~~~~VLDiG~Gs-G~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d------~~~~~  141 (215)
T TIGR00080        69 MTELLELKPGMKVLEIGTGS-GYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGD------GTQGW  141 (215)
T ss_pred             HHHHhCCCCcCEEEEECCCc-cHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECC------cccCC
Confidence            45667789999999998755 6666677776542 269999999887766553    45432  22211      11111


Q ss_pred             HhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          266 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      .  ..+.||+|+-............+.|+++ |+++..
T Consensus       142 ~--~~~~fD~Ii~~~~~~~~~~~~~~~L~~g-G~lv~~  176 (215)
T TIGR00080       142 E--PLAPYDRIYVTAAGPKIPEALIDQLKEG-GILVMP  176 (215)
T ss_pred             c--ccCCCCEEEEcCCcccccHHHHHhcCcC-cEEEEE
Confidence            0  1137999876554444467888999997 998764

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.96  E-value=0.075  Score=46.27  Aligned_cols=35  Identities=31%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .+.+|+|+|.|++|..+++.+...|..++..+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            45789999999999999999999999899999876

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.95  E-value=0.041  Score=49.85  Aligned_cols=79  Identities=15%  Similarity=0.149  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-EE--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EF--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+    .+.. ++  .|..+  ...+.+.+.+..  -
T Consensus         9 ~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   85 (263)
T PRK07814          9 DDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAH--PEATAGLAGQAVEAF   85 (263)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5789999987 9999999998888899 99999988766543322    2222 12  33333  122222222221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        86 ~~id~vi~~Ag~   97 (263)
T PRK07814         86 GRLDIVVNNVGG   97 (263)
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=95.94  E-value=0.18  Score=45.69  Aligned_cols=103  Identities=16%  Similarity=0.210  Sum_probs=60.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch-------------------HH----HHHHHcCC-cEEEcCCCC
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-------------------KF----EIGKRFGV-TEFVNSKNC  256 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~-------------------~~----~~~~~lga-~~v~~~~~~  256 (388)
                      .+.+|+|+|.|++|..++..+-..|..+++.+|.+.-                   |.    +.++++.. ..|....+.
T Consensus        29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~  108 (268)
T PRK15116         29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDF  108 (268)
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecc
Confidence            4578999999999999999999999889999886531                   11    11222221 112111110


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .   ..+.+.++...++|+||||+........+.+......-.++..|..
T Consensus       109 i---~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGa  155 (268)
T PRK15116        109 I---TPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGA  155 (268)
T ss_pred             c---ChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCc
Confidence            0   1122233333379999999998653444444444431345555543

>PRK07402 precorrin-6B methylase; Provisional

Probab=95.93  E-value=0.22  Score=43.07  Aligned_cols=104  Identities=21%  Similarity=0.384  Sum_probs=63.0

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i~  266 (388)
                      +.....+.++++||=+|+|. |..++.+++.....+|++++.+++..+.+++    ++.+.  ++..      +..+.+.
T Consensus        32 l~~~l~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~------d~~~~~~  104 (196)
T PRK07402         32 LISQLRLEPDSVLWDIGAGT-GTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG------SAPECLA  104 (196)
T ss_pred             HHHhcCCCCCCEEEEeCCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC------chHHHHh
Confidence            44566778899988887644 5555666655432399999999988776654    45432  2221      2222222


Q ss_pred             hhcCCCccE-EEEccCC-HHHHHHHHHHhhcCCceEEEEcc
Q 016507          267 DMTDGGADY-CFECVGL-ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       267 ~~~~g~~dv-vid~~g~-~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ... ..+|. +++.... ...+..+.+.|+++ |.++....
T Consensus       105 ~~~-~~~d~v~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~  143 (196)
T PRK07402        105 QLA-PAPDRVCIEGGRPIKEILQAVWQYLKPG-GRLVATAS  143 (196)
T ss_pred             hCC-CCCCEEEEECCcCHHHHHHHHHHhcCCC-eEEEEEee
Confidence            221 23344 4543222 34478889999997 99887754

>PRK05866 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.048  Score=50.41  Aligned_cols=79  Identities=22%  Similarity=0.303  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+    .+.+. +  .|-.+  .+.+.+.+.+..  .
T Consensus        39 ~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  115 (293)
T PRK05866         39 TGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGGDAMAVPCDLSD--LDAVDALVADVEKRI  115 (293)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            3578999987 9999999998888899 99999998876544322    23221 2  23222  122323232221  2


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|+++++.|.
T Consensus       116 g~id~li~~AG~  127 (293)
T PRK05866        116 GGVDILINNAGR  127 (293)
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=95.89  E-value=0.04  Score=49.92  Aligned_cols=78  Identities=17%  Similarity=0.178  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCc-EE--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~-~v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.. .+.. ..  .|-.+  .....+.+.+...  ++.
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDKSAAGLQELEAAHGDAVVGVEGDVRS--LDDHKEAVARCVAAFGKI   80 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCceEEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            4689999987 9999999998888899 89999888776655544 2321 11  23332  1223333333222  378


Q ss_pred             cEEEEccC
Q 016507          274 DYCFECVG  281 (388)
Q Consensus       274 dvvid~~g  281 (388)
                      |++|++.|
T Consensus        81 d~li~~Ag   88 (262)
T TIGR03325        81 DCLIPNAG   88 (262)
T ss_pred             CEEEECCC
Confidence            99999886

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=95.87  E-value=0.057  Score=48.32  Aligned_cols=79  Identities=16%  Similarity=0.270  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch--HHHHHHHcCCcE-E--EcCCCCCCccHHHHHHhhcC--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~--~~~~~~~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~  272 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++.  ..+.+++++... .  .|-.+  .+.+...+.+...  ++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   80 (248)
T TIGR01832         4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEPSETQQQVEALGRRFLSLTADLSD--IEAIKALVDSAVEEFGH   80 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHcCC
Confidence            4789999997 9999999988888899 8999887652  123334444321 2  23332  1333333333221  37


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+++++.|.
T Consensus        81 ~d~li~~ag~   90 (248)
T TIGR01832        81 IDILVNNAGI   90 (248)
T ss_pred             CCEEEECCCC
Confidence            9999998874

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.045  Score=48.47  Aligned_cols=79  Identities=18%  Similarity=0.162  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHH---HcCCcEE-EcCCCCCCccHHHHHHhhcC--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGK---RFGVTEF-VNSKNCGDKSVSQIIIDMTD--GG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~---~lga~~v-~~~~~~~~~~~~~~i~~~~~--g~  272 (388)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+ .+.   ..+...+ .|..+  ..++.+.+.+...  ++
T Consensus         6 ~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   82 (239)
T PRK12828          6 QGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGAAPLSQTLPGVPADALRIGGIDLVD--PQAARRAVDEVNRQFGR   82 (239)
T ss_pred             CCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCChHhHHHHHHHHhhcCceEEEeecCC--HHHHHHHHHHHHHHhCC
Confidence            4789999997 9999999998888899 8999998776532 222   2233221 23222  1233333332221  37


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+||++.+.
T Consensus        83 ~d~vi~~ag~   92 (239)
T PRK12828         83 LDALVNIAGA   92 (239)
T ss_pred             cCEEEECCcc
Confidence            9999998874

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.87  E-value=0.051  Score=48.64  Aligned_cols=79  Identities=23%  Similarity=0.313  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE---EEcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE---FVNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~---v~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+.    ..+...   ..|-.+  .....+.+.+...  
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALGTEVRGYAANVTD--EEDVEATFAQIAEDF   80 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 9999999999888899 8999998876654332    234321   223222  1223333333222  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        81 ~~id~vi~~ag~   92 (253)
T PRK08217         81 GQLNGLINNAGI   92 (253)
T ss_pred             CCCCEEEECCCc
Confidence            368999999873

>PRK07574 formate dehydrogenase; Provisional

Probab=95.87  E-value=0.074  Score=50.97  Aligned_cols=89  Identities=21%  Similarity=0.219  Sum_probs=55.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++....+..+.+++...        .++.+.+.     ..|+|+-+.
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvV~l~l  256 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDRHRLPEEVEQELGLTYH--------VSFDSLVS-----VCDVVTIHC  256 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCCCCchhhHhhcCceec--------CCHHHHhh-----cCCEEEEcC
Confidence            56799999999999999999999999 99999887644443334443211        12222221     456666666


Q ss_pred             CCHHHH-----HHHHHHhhcCCceEEEEc
Q 016507          281 GLASLV-----QEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       281 g~~~~~-----~~~~~~l~~~~G~~v~~g  304 (388)
                      +.....     ...+..|+++ ..+|.++
T Consensus       257 Plt~~T~~li~~~~l~~mk~g-a~lIN~a  284 (385)
T PRK07574        257 PLHPETEHLFDADVLSRMKRG-SYLVNTA  284 (385)
T ss_pred             CCCHHHHHHhCHHHHhcCCCC-cEEEECC
Confidence            533211     2445556664 5555554

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.86  E-value=0.047  Score=48.87  Aligned_cols=79  Identities=19%  Similarity=0.186  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcC--Cc-EE--EcCCCCCCccHHHHHHhhc--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG--VT-EF--VNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lg--a~-~v--~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. .+.  .. ..  .|-.+  ...+...+.+..  .+
T Consensus         4 ~~~~vlItGasg~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   80 (251)
T PRK07231          4 EGKVAIVTGASSGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILAGGRAIAVAADVSD--EADVEAAVAAALERFG   80 (251)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4568999997 9999999988888899 7999999887655433 222  11 11  22222  123333333221  13


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|+||.+.|.
T Consensus        81 ~~d~vi~~ag~   91 (251)
T PRK07231         81 SVDILVNNAGT   91 (251)
T ss_pred             CCCEEEECCCC
Confidence            79999998875

>PRK06500 short chain dehydrogenase; Provisional

Probab=95.86  E-value=0.052  Score=48.54  Aligned_cols=79  Identities=22%  Similarity=0.252  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE-E--EcCCCCCCccHHHHHHhhc--CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~-v--~~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+ ++++... .  .|..+  ..+....+.+..  .+++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGA-RVAITGRDPASLEAARAELGESALVIRADAGD--VAAQKALAQALAEAFGRL   81 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999987 9999999999988999 899998887665433 3455432 1  23222  122222222221  1379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        82 d~vi~~ag~   90 (249)
T PRK06500         82 DAVFINAGV   90 (249)
T ss_pred             CEEEECCCC
Confidence            999998874

>PRK00536 speE spermidine synthase; Provisional

Probab=95.83  E-value=0.037  Score=49.93  Aligned_cols=100  Identities=12%  Similarity=-0.055  Sum_probs=67.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCC-cEEEcCCCCCCccHHHHHHhhcCCCccEE-
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYC-  276 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga-~~v~~~~~~~~~~~~~~i~~~~~g~~dvv-  276 (388)
                      ...++|||+|+|- |.++=+++|+-.  +|..++.+++-.+.+++ ++. ...++...   -.+...+.+...+.||+| 
T Consensus        71 ~~pk~VLIiGGGD-Gg~~REvLkh~~--~v~mVeID~~Vv~~~k~~lP~~~~~~~DpR---v~l~~~~~~~~~~~fDVII  144 (262)
T PRK00536         71 KELKEVLIVDGFD-LELAHQLFKYDT--HVDFVQADEKILDSFISFFPHFHEVKNNKN---FTHAKQLLDLDIKKYDLII  144 (262)
T ss_pred             CCCCeEEEEcCCc-hHHHHHHHCcCC--eeEEEECCHHHHHHHHHHCHHHHHhhcCCC---EEEeehhhhccCCcCCEEE
Confidence            4458999998766 666778888853  89999999988888887 321 11233222   222223333333489998 


Q ss_pred             EEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          277 FECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       277 id~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +|......-.+.+.++|+++ |.++.-+.+
T Consensus       145 vDs~~~~~fy~~~~~~L~~~-Gi~v~Qs~s  173 (262)
T PRK00536        145 CLQEPDIHKIDGLKRMLKED-GVFISVAKH  173 (262)
T ss_pred             EcCCCChHHHHHHHHhcCCC-cEEEECCCC
Confidence            55566666578899999997 999877653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=95.83  E-value=0.13  Score=43.09  Aligned_cols=87  Identities=24%  Similarity=0.230  Sum_probs=58.4

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|-++|.|.+|...+.-+...|+ +|.+.++++++.+.+.+.|+..+        .+..+.+.     ..|+||-|+...
T Consensus         3 ~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~g~~~~--------~s~~e~~~-----~~dvvi~~v~~~   68 (163)
T PF03446_consen    3 KIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAEAGAEVA--------DSPAEAAE-----QADVVILCVPDD   68 (163)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHHTTEEEE--------SSHHHHHH-----HBSEEEE-SSSH
T ss_pred             EEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHHhhhhhh--------hhhhhHhh-----cccceEeecccc
Confidence            68899999999999888888899 99999999999988888775432        12333332     458999998886


Q ss_pred             HHHHHHHHH------hhcCCceEEEEcc
Q 016507          284 SLVQEAYAC------CRKGWGKTIVLGV  305 (388)
Q Consensus       284 ~~~~~~~~~------l~~~~G~~v~~g~  305 (388)
                      ..+...+.-      +.++ ..++.++.
T Consensus        69 ~~v~~v~~~~~i~~~l~~g-~iiid~sT   95 (163)
T PF03446_consen   69 DAVEAVLFGENILAGLRPG-KIIIDMST   95 (163)
T ss_dssp             HHHHHHHHCTTHGGGS-TT-EEEEE-SS
T ss_pred             hhhhhhhhhhHHhhccccc-eEEEecCC
Confidence            656554443      3443 45555544

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.79  E-value=0.023  Score=55.99  Aligned_cols=93  Identities=12%  Similarity=0.107  Sum_probs=64.6

Q ss_pred             hcCCCCCCEEE----EEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc-EEEcCCCCCCccHHHHHHhhc
Q 016507          196 TANVEVGSTVV----IFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       196 ~~~~~~~~~Vl----I~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      ..++++|+++|    |+|+ |++|.+++|+++..|+ .|+++...+.+....+..+.+ .++|.+.   ..+.+.+....
T Consensus        28 l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~~~l~~~~  103 (450)
T PRK08261         28 LRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGY-DVVANNDGGLTWAAGWGDRFGALVFDATG---ITDPADLKALY  103 (450)
T ss_pred             ccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCC-eeeecCccccccccCcCCcccEEEEECCC---CCCHHHHHHHH
Confidence            45677888888    8865 9999999999999999 899887666644444444444 4666665   34444444331


Q ss_pred             CCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCC
Q 016507          270 DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       270 ~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                                    ..+...++.+.++ |+++.++...
T Consensus       104 --------------~~~~~~l~~l~~~-griv~i~s~~  126 (450)
T PRK08261        104 --------------EFFHPVLRSLAPC-GRVVVLGRPP  126 (450)
T ss_pred             --------------HHHHHHHHhccCC-CEEEEEcccc
Confidence                          2256777888886 8988887643

>PRK06953 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.07  Score=46.95  Aligned_cols=77  Identities=19%  Similarity=0.249  Sum_probs=52.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .++||+|+ |.+|...++.+...|+ +|+.+++++++.+.++..+... ..|-.+  ...+.+.+.+...+++|+++.+.
T Consensus         2 ~~vlvtG~sg~iG~~la~~L~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~~d~vi~~a   78 (222)
T PRK06953          2 KTVLIVGASRGIGREFVRQYRADGW-RVIATARDAAALAALQALGAEALALDVAD--PASVAGLAWKLDGEALDAAVYVA   78 (222)
T ss_pred             ceEEEEcCCCchhHHHHHHHHhCCC-EEEEEECCHHHHHHHHhccceEEEecCCC--HHHHHHHHHHhcCCCCCEEEECC
Confidence            46899987 9999998887777899 8999998887777666655432 233333  12233322233223799999987


Q ss_pred             CC
Q 016507          281 GL  282 (388)
Q Consensus       281 g~  282 (388)
                      |.
T Consensus        79 g~   80 (222)
T PRK06953         79 GV   80 (222)
T ss_pred             Cc
Confidence            75

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.78  E-value=0.05  Score=48.92  Aligned_cols=78  Identities=23%  Similarity=0.261  Sum_probs=50.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-EEE--cCCCCCCccHHHHHHhhcC--C
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~v~--~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      +.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+    .+.. ..+  |-.+  .+.+.+.+.+...  +
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   77 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRN--PEDVQKMVEQIDEKFG   77 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHhC
Confidence            468999987 9999999999888999 89999888766544332    2221 222  3222  1233333333221  3


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus        78 ~id~lI~~ag~   88 (252)
T PRK07677         78 RIDALINNAAG   88 (252)
T ss_pred             CccEEEECCCC
Confidence            78999998873

>PRK06180 short chain dehydrogenase; Provisional

Probab=95.77  E-value=0.054  Score=49.52  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-CCcE---EEcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTE---FVNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-ga~~---v~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+... +...   ..|-.+  .+.+.+.+.+...  +++
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~~~   79 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEAARADFEALHPDRALARLLDVTD--FDAIDAVVADAEATFGPI   79 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            3568999987 9999999998888899 899999988876655543 2111   223333  1223333332221  368


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        80 d~vv~~ag~   88 (277)
T PRK06180         80 DVLVNNAGY   88 (277)
T ss_pred             CEEEECCCc
Confidence            999999885

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.76  E-value=0.069  Score=46.56  Aligned_cols=94  Identities=18%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch-HHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~-~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      .|.+|||+|+|.+|..-++.+...|+ +|++++.... ..+.+...|- ..+-.++   -. ...+     .++++||-+
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~~~l~~l~~~~~-i~~~~~~---~~-~~dl-----~~~~lVi~a   76 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELESELTLLAEQGG-ITWLARC---FD-ADIL-----EGAFLVIAA   76 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCCHHHHHHHHcCC-EEEEeCC---CC-HHHh-----CCcEEEEEC
Confidence            46799999999999999999999999 8888865432 2222223331 1121222   11 1111     279999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          280 VGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .+.+..-.......+.. |..+.....
T Consensus        77 t~d~~ln~~i~~~a~~~-~ilvn~~d~  102 (205)
T TIGR01470        77 TDDEELNRRVAHAARAR-GVPVNVVDD  102 (205)
T ss_pred             CCCHHHHHHHHHHHHHc-CCEEEECCC
Confidence            99886344555555564 777766543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK09291 short chain dehydrogenase; Provisional

Probab=95.76  E-value=0.057  Score=48.57  Aligned_cols=73  Identities=16%  Similarity=0.138  Sum_probs=49.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE---EEcCCCCCCccHHHHHHhhcCCCc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE---FVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~---v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +.+|||+|+ |.+|..+++.+...|+ +|+++.+++++.+.+..    .+...   ..|..+   .   +.+.+...+++
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~~~i   74 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTD---A---IDRAQAAEWDV   74 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCC---H---HHHHHHhcCCC
Confidence            357999997 9999999999998999 89999887765544332    22221   224333   1   23333333489


Q ss_pred             cEEEEccC
Q 016507          274 DYCFECVG  281 (388)
Q Consensus       274 dvvid~~g  281 (388)
                      |++|++.|
T Consensus        75 d~vi~~ag   82 (257)
T PRK09291         75 DVLLNNAG   82 (257)
T ss_pred             CEEEECCC
Confidence            99999987

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=95.75  E-value=0.012  Score=53.72  Aligned_cols=99  Identities=19%  Similarity=0.305  Sum_probs=61.0

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i  265 (388)
                      +.+.+++++|++||-+|.| -|.+++.+++..|+ +|++++.|+++.+++++    .|..   .+.. .     ++    
T Consensus        54 ~~~~~~l~~G~~vLDiGcG-wG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~-~-----D~----  121 (273)
T PF02353_consen   54 LCEKLGLKPGDRVLDIGCG-WGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRL-Q-----DY----  121 (273)
T ss_dssp             HHTTTT--TT-EEEEES-T-TSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEE-S------G----
T ss_pred             HHHHhCCCCCCEEEEeCCC-ccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-e-----ec----
Confidence            5678899999999999976 46677778887899 99999999998887754    4532   1221 1     11    


Q ss_pred             HhhcCCCccEEEE-----ccCC---HHHHHHHHHHhhcCCceEEEEcc
Q 016507          266 IDMTDGGADYCFE-----CVGL---ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g~~dvvid-----~~g~---~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +++. +.||.|+.     .+|.   +..+..+.+.|+|+ |+++.-..
T Consensus       122 ~~~~-~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkpg-G~~~lq~i  167 (273)
T PF02353_consen  122 RDLP-GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPG-GRLVLQTI  167 (273)
T ss_dssp             GG----S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETT-EEEEEEEE
T ss_pred             cccC-CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCC-cEEEEEec
Confidence            1221 28998864     3332   23378899999998 99875443

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []

Probab=95.75  E-value=0.07  Score=42.53  Aligned_cols=98  Identities=17%  Similarity=0.203  Sum_probs=57.8

Q ss_pred             EEEEcc-chhHHHHHHHHHHcC--CcEEEEEcCCchHH---HHHHHcCCcEEEcCCCCCCccHHH---------------
Q 016507          205 VVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKF---EIGKRFGVTEFVNSKNCGDKSVSQ---------------  263 (388)
Q Consensus       205 VlI~Ga-g~vG~~ai~la~~~g--~~~Vi~~~~~~~~~---~~~~~lga~~v~~~~~~~~~~~~~---------------  263 (388)
                      |.|+|+ |+||..++.+.+...  + +|++..-...-.   +.++++.+..+.-.++.....+.+               
T Consensus         1 i~ILGsTGSIG~qtLdVi~~~~d~f-~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~   79 (129)
T PF02670_consen    1 IAILGSTGSIGTQTLDVIRKHPDKF-EVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGP   79 (129)
T ss_dssp             EEEESTTSHHHHHHHHHHHHCTTTE-EEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESH
T ss_pred             CEEEcCCcHHHHHHHHHHHhCCCce-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeCh
Confidence            578898 999999999998876  5 677765444322   334457777665544300011111               


Q ss_pred             -HHHhhcC-CCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          264 -IIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       264 -~i~~~~~-g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       .+.+... ..+|+|+.++.+-.++...+..+..  |+-+.+++
T Consensus        80 ~~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~--gk~iaLAN  121 (129)
T PF02670_consen   80 EGLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKA--GKDIALAN  121 (129)
T ss_dssp             HHHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHT--TSEEEE--
T ss_pred             HHHHHHhcCCCCCEEEEeCcccchHHHHHHHHHC--CCeEEEec
Confidence             1222222 2789999988888778888888886  56666654

In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....

>PRK05867 short chain dehydrogenase; Provisional

Probab=95.74  E-value=0.055  Score=48.66  Aligned_cols=79  Identities=22%  Similarity=0.220  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE---EEcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE---FVNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~---v~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.+    .+...   ..|-.+  .+.+.+.+.+..  .
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQ--HQQVTSMLDQVTAEL   84 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4788999987 9999999998888999 89999888776544322    23221   233333  123333333221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|+++.+.|.
T Consensus        85 g~id~lv~~ag~   96 (253)
T PRK05867         85 GGIDIAVCNAGI   96 (253)
T ss_pred             CCCCEEEECCCC
Confidence            479999998873

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.74  E-value=0.048  Score=56.46  Aligned_cols=77  Identities=27%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch---------------------HHHHHHHcCCcEEEcCCCCCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSKNCGDK  259 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~---------------------~~~~~~~lga~~v~~~~~~~~~  259 (388)
                      .+.+|+|+|+|+.|+.++..+...|+ +|+++++.+.                     ..+.++++|++...+..-..+-
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~-~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGV-AVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            57899999999999999999999999 8999986542                     3455667787654443210001


Q ss_pred             cHHHHHHhhcCCCccEEEEccCCH
Q 016507          260 SVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       260 ~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      .+. .+.    .+||.||.++|..
T Consensus       405 ~~~-~~~----~~~DavilAtGa~  423 (654)
T PRK12769        405 SLE-SLL----EDYDAVFVGVGTY  423 (654)
T ss_pred             CHH-HHH----hcCCEEEEeCCCC
Confidence            121 111    2799999988853

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.72  E-value=0.067  Score=44.18  Aligned_cols=95  Identities=22%  Similarity=0.231  Sum_probs=59.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCCcE-EEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga~~-v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      ..+.+|+|+|+|.+|...++.+...|..+|+++++++++.+. ++.++... ....     .+..+.     -+++|+|+
T Consensus        17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-----~~~~Dvvi   86 (155)
T cd01065          17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAY-----LDLEEL-----LAEADLII   86 (155)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceee-----cchhhc-----cccCCEEE
Confidence            457899999999999999988888764489999988876654 44555421 0111     112111     13799999


Q ss_pred             EccCCHHH----HHHHHHHhhcCCceEEEEcc
Q 016507          278 ECVGLASL----VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       278 d~~g~~~~----~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .|++....    .......++++ ..++.++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~D~~~  117 (155)
T cd01065          87 NTTPVGMKPGDELPLPPSLLKPG-GVVYDVVY  117 (155)
T ss_pred             eCcCCCCCCCCCCCCCHHHcCCC-CEEEEcCc
Confidence            99887541    11222345554 55555644

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.72  E-value=0.058  Score=49.28  Aligned_cols=79  Identities=18%  Similarity=0.248  Sum_probs=49.3

Q ss_pred             CCCEEEEEccc---hhHHHHHHHHHHcCCcEEEEEcCCchHHHH----HHHcCCcEEE--cCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVTEFV--NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Gag---~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~----~~~lga~~v~--~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|++   ++|.++++.+...|+ +|+.++++++..+.    .+++|....+  |-.+  .++..+.+.+... 
T Consensus         6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d--~~~v~~~~~~~~~~   82 (271)
T PRK06505          6 QGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVED--IASVDAVFEALEKK   82 (271)
T ss_pred             CCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCC--HHHHHHHHHHHHHH
Confidence            56789999974   899999998888999 88888776532222    2334533222  3332  1223333333222 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       |.+|+++++.|.
T Consensus        83 ~g~iD~lVnnAG~   95 (271)
T PRK06505         83 WGKLDFVVHAIGF   95 (271)
T ss_pred             hCCCCEEEECCcc
Confidence             479999998873

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=95.71  E-value=0.03  Score=51.53  Aligned_cols=135  Identities=21%  Similarity=0.295  Sum_probs=72.2

Q ss_pred             ceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHh-cCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEc
Q 016507          155 SFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (388)
Q Consensus       155 ~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~  233 (388)
                      .|.+|-.-+.+.++.+...+.+-.+    ....|... +... .-..+|++||=+|.|+ |.+++..++ +|+++|+++|
T Consensus       119 ~w~~~~~~~~~~~I~idPg~AFGTG----~H~TT~lc-l~~l~~~~~~g~~vLDvG~GS-GILaiaA~k-lGA~~v~a~D  191 (295)
T PF06325_consen  119 SWEEYPEPPDEIVIEIDPGMAFGTG----HHPTTRLC-LELLEKYVKPGKRVLDVGCGS-GILAIAAAK-LGAKKVVAID  191 (295)
T ss_dssp             TT----SSTTSEEEEESTTSSS-SS----HCHHHHHH-HHHHHHHSSTTSEEEEES-TT-SHHHHHHHH-TTBSEEEEEE
T ss_pred             CCcccCCCCCcEEEEECCCCcccCC----CCHHHHHH-HHHHHHhccCCCEEEEeCCcH-HHHHHHHHH-cCCCeEEEec
Confidence            4555422234456666665544332    23333332 2111 1267889999888644 555555555 4888999999


Q ss_pred             CCchHHHHHHH----cCCc-EEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHH---HHHHHHHhhcCCceEEEEcc
Q 016507          234 VISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL---VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       234 ~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~---~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .++.-.+.++.    .|.. .+.-...   .+.       ..++||+|+-.+-....   .....+.++++ |.++..|.
T Consensus       192 iDp~Av~~a~~N~~~N~~~~~~~v~~~---~~~-------~~~~~dlvvANI~~~vL~~l~~~~~~~l~~~-G~lIlSGI  260 (295)
T PF06325_consen  192 IDPLAVEAARENAELNGVEDRIEVSLS---EDL-------VEGKFDLVVANILADVLLELAPDIASLLKPG-GYLILSGI  260 (295)
T ss_dssp             SSCHHHHHHHHHHHHTT-TTCEEESCT---SCT-------CCS-EEEEEEES-HHHHHHHHHHCHHHEEEE-EEEEEEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCeeEEEEEe---ccc-------ccccCCEEEECCCHHHHHHHHHHHHHhhCCC-CEEEEccc
Confidence            99876555443    3432 2211111   111       12489999987766542   34556678887 99999987


Q ss_pred             CC
Q 016507          306 DQ  307 (388)
Q Consensus       306 ~~  307 (388)
                      ..
T Consensus       261 l~  262 (295)
T PF06325_consen  261 LE  262 (295)
T ss_dssp             EG
T ss_pred             cH
Confidence            53

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PRK06128 oxidoreductase; Provisional

Probab=95.70  E-value=0.15  Score=47.26  Aligned_cols=79  Identities=23%  Similarity=0.204  Sum_probs=47.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH------HHHHHHcCCcEE---EcCCCCCCccHHHHHHhhc-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK------FEIGKRFGVTEF---VNSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~------~~~~~~lga~~v---~~~~~~~~~~~~~~i~~~~-  269 (388)
                      .+.++||+|+ |.+|...+..+...|+ +|+.+.++.+.      .+.++..+....   .|-.+  .....+.+.+.. 
T Consensus        54 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  130 (300)
T PRK06128         54 QGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKD--EAFCRQLVERAVK  130 (300)
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCC--HHHHHHHHHHHHH
Confidence            4679999987 9999999988888899 78777554321      122333443221   23322  122233333222 


Q ss_pred             -CCCccEEEEccCC
Q 016507          270 -DGGADYCFECVGL  282 (388)
Q Consensus       270 -~g~~dvvid~~g~  282 (388)
                       .+++|++|++.|.
T Consensus       131 ~~g~iD~lV~nAg~  144 (300)
T PRK06128        131 ELGGLDILVNIAGK  144 (300)
T ss_pred             HhCCCCEEEECCcc
Confidence             1379999998873

>PRK06196 oxidoreductase; Provisional

Probab=95.69  E-value=0.064  Score=50.10  Aligned_cols=79  Identities=18%  Similarity=0.216  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcC-CcE-EEcCCCCCCccHHHHHHhhcC--CCcc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG-VTE-FVNSKNCGDKSVSQIIIDMTD--GGAD  274 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lg-a~~-v~~~~~~~~~~~~~~i~~~~~--g~~d  274 (388)
                      .+.+|||+|+ |.+|..++..+...|+ +|+++++++++.+.+ ..+. +.. ..|-.+  ...+.+.+.+...  +++|
T Consensus        25 ~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d--~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         25 SGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRPDVAREALAGIDGVEVVMLDLAD--LESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhhCeEEEccCCC--HHHHHHHHHHHHhcCCCCC
Confidence            4678999997 9999999988888899 899998887765433 2222 221 123333  1223333333222  3799


Q ss_pred             EEEEccCC
Q 016507          275 YCFECVGL  282 (388)
Q Consensus       275 vvid~~g~  282 (388)
                      ++|++.|.
T Consensus       102 ~li~nAg~  109 (315)
T PRK06196        102 ILINNAGV  109 (315)
T ss_pred             EEEECCCC
Confidence            99998873

>PRK08339 short chain dehydrogenase; Provisional

Probab=95.68  E-value=0.072  Score=48.37  Aligned_cols=79  Identities=18%  Similarity=0.247  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c----CCc-E--EEcCCCCCCccHHHHHHhhc-C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVT-E--FVNSKNCGDKSVSQIIIDMT-D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l----ga~-~--v~~~~~~~~~~~~~~i~~~~-~  270 (388)
                      .+.++||+|+ |++|.++++.+...|+ +|+++++++++.+.+.+ +    +.. .  ..|-.+  ..+..+.+.+.. .
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~   83 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTK--REDLERTVKELKNI   83 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHHHHhh
Confidence            4778999987 9999999999888999 89999988776544332 2    322 1  233333  123333333221 1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      |++|+++++.|.
T Consensus        84 g~iD~lv~nag~   95 (263)
T PRK08339         84 GEPDIFFFSTGG   95 (263)
T ss_pred             CCCcEEEECCCC
Confidence            479999998874

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.64  E-value=0.067  Score=48.39  Aligned_cols=79  Identities=14%  Similarity=0.328  Sum_probs=48.5

Q ss_pred             CCCEEEEEccc---hhHHHHHHHHHHcCCcEEEEEcCCchHHH----HHHHcCCcEEE--cCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVTEFV--NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Gag---~vG~~ai~la~~~g~~~Vi~~~~~~~~~~----~~~~lga~~v~--~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|++   ++|.+.++.+...|+ +|+.++++++..+    ..++++....+  |-.+  .++..+.+.+... 
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVRE--PGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCC--HHHHHHHHHHHHHH
Confidence            46889999863   899999988888899 8888887754322    22233432222  3222  1233333332221 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       |+.|+++++.|.
T Consensus        86 ~g~ld~lv~nAg~   98 (258)
T PRK07533         86 WGRLDFLLHSIAF   98 (258)
T ss_pred             cCCCCEEEEcCcc
Confidence             479999998863

>PRK06484 short chain dehydrogenase; Validated

Probab=95.61  E-value=0.17  Score=50.78  Aligned_cols=102  Identities=23%  Similarity=0.262  Sum_probs=66.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcE---EEcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE---FVNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~---v~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ +++|...++.+...|+ +|+.+++++++.+.+.+ ++...   ..|-.+  .+...+.+.+...  |.+
T Consensus       268 ~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i  344 (520)
T PRK06484        268 SPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDAEGAKKLAEALGDEHLSVQADITD--EAAVESAFAQIQARWGRL  344 (520)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            5788999987 9999999998888999 99999988877665543 44322   233333  1233333333221  379


Q ss_pred             cEEEEccCCH--------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          274 DYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       274 dvvid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      |++|++.|..                          ...+.++..+..+ |+++.++..
T Consensus       345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-g~iv~isS~  402 (520)
T PRK06484        345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQG-GVIVNLGSI  402 (520)
T ss_pred             CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccC-CEEEEECch
Confidence            9999988742                          0123334555565 899988764

>CHL00194 ycf39 Ycf39; Provisional

Probab=95.60  E-value=0.07  Score=49.92  Aligned_cols=94  Identities=11%  Similarity=0.097  Sum_probs=61.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|||+|+ |.+|..++..+...|+ +|.++.++.++...+...+++.+. |..+   .   +.+.+... ++|+||++++
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d---~---~~l~~al~-g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVRNLRKASFLKEWGAELVYGDLSL---P---ETLPPSFK-GVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEcChHHhhhHhhcCCEEEECCCCC---H---HHHHHHHC-CCCEEEECCC
Confidence            6999997 9999999998888898 899998887766555555665432 2222   1   12222222 7899999876


Q ss_pred             CHH------------HHHHHHHHhhcCCc--eEEEEccC
Q 016507          282 LAS------------LVQEAYACCRKGWG--KTIVLGVD  306 (388)
Q Consensus       282 ~~~------------~~~~~~~~l~~~~G--~~v~~g~~  306 (388)
                      ...            .....++.+... |  +++.++..
T Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~aa~~~-gvkr~I~~Ss~  111 (317)
T CHL00194         74 SRPSDLYNAKQIDWDGKLALIEAAKAA-KIKRFIFFSIL  111 (317)
T ss_pred             CCCCCccchhhhhHHHHHHHHHHHHHc-CCCEEEEeccc
Confidence            321            123445555553 4  78877653

>PRK05717 oxidoreductase; Validated

Probab=95.60  E-value=0.072  Score=47.95  Aligned_cols=79  Identities=18%  Similarity=0.226  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCCcE---EEcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTE---FVNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga~~---v~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .|.++||+|+ |.+|..++..+...|+ +|+.+++++++.+. .+.++...   ..|-.+  ...+.+.+.+...  +++
T Consensus         9 ~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~i   85 (255)
T PRK05717          9 NGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLDRERGSKVAKALGENAWFIAMDVAD--EAQVAAGVAEVLGQFGRL   85 (255)
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHcCCceEEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            4678999987 9999999988888898 89999877665443 33344221   123222  1223222333322  368


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|.+.|.
T Consensus        86 d~li~~ag~   94 (255)
T PRK05717         86 DALVCNAAI   94 (255)
T ss_pred             CEEEECCCc
Confidence            999998874

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.58  E-value=0.075  Score=47.22  Aligned_cols=79  Identities=23%  Similarity=0.284  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcEE---EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      ++.+|||+|+ |.+|...++.+...|+ +|+++.+++++.+.+    +..+....   .|-.+  ...+.+.+.+...  
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSD--EAAVRALIEAAVEAF   80 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            3568999997 9999999998888899 799999987764433    22343222   23332  1233333333221  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|.++.+.|.
T Consensus        81 ~~id~vi~~ag~   92 (246)
T PRK05653         81 GALDILVNNAGI   92 (246)
T ss_pred             CCCCEEEECCCc
Confidence            368999999865

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=95.58  E-value=0.25  Score=43.88  Aligned_cols=101  Identities=20%  Similarity=0.192  Sum_probs=58.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch-------------------HH----HHHHHcCCc-EEEcCCCCC
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-------------------KF----EIGKRFGVT-EFVNSKNCG  257 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~-------------------~~----~~~~~lga~-~v~~~~~~~  257 (388)
                      +.+|+|+|.|++|..+++.+-..|..+++.+|.+.=                   |.    +.++++..+ .+.-.+.  
T Consensus        11 ~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~--   88 (231)
T cd00755          11 NAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE--   88 (231)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee--
Confidence            468999999999999999999999999999986541                   11    111222211 1111111  


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       .-..+.+.++...++|+|+||+........+.+......-.++..+.
T Consensus        89 -~i~~~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g  135 (231)
T cd00755          89 -FLTPDNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMG  135 (231)
T ss_pred             -ecCHhHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeC
Confidence             00112233333347999999999876444455544443133554444

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=95.56  E-value=0.076  Score=48.74  Aligned_cols=94  Identities=17%  Similarity=0.114  Sum_probs=59.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      ..+.+|||+|+|.+|.+++..+...|+.+|+++.++.++.+.+. .++...-+.. .   .+..+.+     .++|+||+
T Consensus       121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~-~---~~~~~~~-----~~~DivIn  191 (278)
T PRK00258        121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAEL-D---LELQEEL-----ADFDLIIN  191 (278)
T ss_pred             CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceee-c---ccchhcc-----ccCCEEEE
Confidence            45678999999999999999999999669999999988766543 3332100110 0   0011111     27999999


Q ss_pred             ccCCHHHH-----HHHHHHhhcCCceEEEE
Q 016507          279 CVGLASLV-----QEAYACCRKGWGKTIVL  303 (388)
Q Consensus       279 ~~g~~~~~-----~~~~~~l~~~~G~~v~~  303 (388)
                      |++....-     ......+.++ ..++.+
T Consensus       192 aTp~g~~~~~~~~~~~~~~l~~~-~~v~Di  220 (278)
T PRK00258        192 ATSAGMSGELPLPPLPLSLLRPG-TIVYDM  220 (278)
T ss_pred             CCcCCCCCCCCCCCCCHHHcCCC-CEEEEe
Confidence            98754310     1223556664 555555

>PLN03139 formate dehydrogenase; Provisional

Probab=95.55  E-value=0.11  Score=49.76  Aligned_cols=46  Identities=24%  Similarity=0.294  Sum_probs=36.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      .|.+|.|+|.|.||...++.++.+|+ +|++.+++....+.....|+
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~-~V~~~d~~~~~~~~~~~~g~  243 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNC-NLLYHDRLKMDPELEKETGA  243 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCC-EEEEECCCCcchhhHhhcCc
Confidence            57899999999999999999999999 89999877544444444443

>PRK07478 short chain dehydrogenase; Provisional

Probab=95.55  E-value=0.078  Score=47.67  Aligned_cols=79  Identities=19%  Similarity=0.226  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+.    ..+.+. .  .|-.+  .....+.+.+...  
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRD--EAYAKALVALAVERF   81 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            4678999987 9999999998888999 8999988877655432    223222 2  23322  1222223332222  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|.+.|.
T Consensus        82 ~~id~li~~ag~   93 (254)
T PRK07478         82 GGLDIAFNNAGT   93 (254)
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.53  E-value=0.12  Score=47.41  Aligned_cols=44  Identities=23%  Similarity=0.216  Sum_probs=37.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~  243 (388)
                      ..+.++||+|+|+.|.+++..+...|+.+|+++.++.+|.+.+.
T Consensus       125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La  168 (283)
T PRK14027        125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA  168 (283)
T ss_pred             cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHH
Confidence            34678999999999999998888899889999999988766553

>PRK07340 ornithine cyclodeaminase; Validated

Probab=95.52  E-value=0.066  Score=49.79  Aligned_cols=101  Identities=14%  Similarity=0.064  Sum_probs=67.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HcCCcEEEEEcCCchHHHH-HHHcC---CcEEEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEI-GKRFG---VTEFVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~-~~g~~~Vi~~~~~~~~~~~-~~~lg---a~~v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      ....+++|+|+|..|.+.++.+. ..+.++|.+..+++++.+. +.++.   ....  .     .+..+.+     .+.|
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~--~-----~~~~~av-----~~aD  190 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAE--P-----LDGEAIP-----EAVD  190 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeE--E-----CCHHHHh-----hcCC
Confidence            45678999999999999888775 4677789999999887654 44443   2211  1     1233333     2799


Q ss_pred             EEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCH
Q 016507          275 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS  316 (388)
Q Consensus       275 vvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~  316 (388)
                      +|+.|+++...+-..  .++++ -+++.+|.... ..-.++.
T Consensus       191 iVitaT~s~~Pl~~~--~~~~g-~hi~~iGs~~p-~~~El~~  228 (304)
T PRK07340        191 LVVTATTSRTPVYPE--AARAG-RLVVAVGAFTP-DMAELAP  228 (304)
T ss_pred             EEEEccCCCCceeCc--cCCCC-CEEEecCCCCC-CcccCCH
Confidence            999999877544333  37886 88999987543 2334553

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.51  E-value=0.084  Score=47.59  Aligned_cols=79  Identities=22%  Similarity=0.268  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcEE---EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+    ++.+....   .|-.+  ...+.+.+.+..  .
T Consensus         6 ~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   82 (262)
T PRK13394          6 NGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGGKAIGVAMDVTN--EDAVNAGIDKVAERF   82 (262)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4679999997 9999999998888899 899998887654332    23343321   22222  122222222221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      ++.|++|.+.|.
T Consensus        83 ~~~d~vi~~ag~   94 (262)
T PRK13394         83 GSVDILVSNAGI   94 (262)
T ss_pred             CCCCEEEECCcc
Confidence            368999998874

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=95.49  E-value=0.13  Score=44.33  Aligned_cols=76  Identities=26%  Similarity=0.300  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c----CCcE-EEcCCCCCCccHHHHHHhhcCCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVTE-FVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l----ga~~-v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      ++.+++|+|+ |.+|..++..+...|+ +|+.+.++.++.+.+.+ +    +... ..+..+  ..++.+.+     .+.
T Consensus        27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~-~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~~-----~~~   98 (194)
T cd01078          27 KGKTAVVLGGTGPVGQRAAVLLAREGA-RVVLVGRDLERAQKAADSLRARFGEGVGAVETSD--DAARAAAI-----KGA   98 (194)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCC--HHHHHHHH-----hcC
Confidence            5689999997 9999988888877887 89999888776654432 2    2221 122222  12222222     278


Q ss_pred             cEEEEccCCHH
Q 016507          274 DYCFECVGLAS  284 (388)
Q Consensus       274 dvvid~~g~~~  284 (388)
                      |+||.+++...
T Consensus        99 diVi~at~~g~  109 (194)
T cd01078          99 DVVFAAGAAGV  109 (194)
T ss_pred             CEEEECCCCCc
Confidence            99999887654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK07904 short chain dehydrogenase; Provisional

Probab=95.48  E-value=0.11  Score=46.86  Aligned_cols=81  Identities=23%  Similarity=0.299  Sum_probs=49.5

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHc-CCcEEEEEcCCchH-HH-H---HHHcCC-c-EE--EcCCCCCCccHHHHHHh
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEK-FE-I---GKRFGV-T-EF--VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~-g~~~Vi~~~~~~~~-~~-~---~~~lga-~-~v--~~~~~~~~~~~~~~i~~  267 (388)
                      +-.+.+|||+|+ |++|...++-+... |+ +|+++++++++ .+ .   ++..+. . ++  .|-.+  ..+..+.+.+
T Consensus         5 ~~~~~~vlItGas~giG~~la~~l~~~gg~-~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~--~~~~~~~~~~   81 (253)
T PRK07904          5 VGNPQTILLLGGTSEIGLAICERYLKNAPA-RVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALD--TDSHPKVIDA   81 (253)
T ss_pred             cCCCcEEEEEcCCcHHHHHHHHHHHhcCCC-eEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCC--hHHHHHHHHH
Confidence            445678999997 99999988876555 57 89999888764 33 2   223332 1 22  33332  1333333333


Q ss_pred             hcC-CCccEEEEccCC
Q 016507          268 MTD-GGADYCFECVGL  282 (388)
Q Consensus       268 ~~~-g~~dvvid~~g~  282 (388)
                      ... ++.|+++.+.|.
T Consensus        82 ~~~~g~id~li~~ag~   97 (253)
T PRK07904         82 AFAGGDVDVAIVAFGL   97 (253)
T ss_pred             HHhcCCCCEEEEeeec
Confidence            322 489999887764

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.47  E-value=0.083  Score=47.70  Aligned_cols=76  Identities=20%  Similarity=0.228  Sum_probs=48.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEE--EcCCCCCCccHHHHHHhhc--CCCcc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF--VNSKNCGDKSVSQIIIDMT--DGGAD  274 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v--~~~~~~~~~~~~~~i~~~~--~g~~d  274 (388)
                      ++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+-.+.  .|-.+  .+++.+.+.+..  .+++|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d--~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYGEVYAVKADLSD--KDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCC--HHHHHHHHHHHHHhcCCCC
Confidence            6899987 9999999988888899 8999988876654332    2232122  23222  123333333322  23799


Q ss_pred             EEEEccCC
Q 016507          275 YCFECVGL  282 (388)
Q Consensus       275 vvid~~g~  282 (388)
                      ++|++.|.
T Consensus        79 ~li~naG~   86 (259)
T PRK08340         79 ALVWNAGN   86 (259)
T ss_pred             EEEECCCC
Confidence            99998874

>PRK07774 short chain dehydrogenase; Provisional

Probab=95.47  E-value=0.09  Score=47.04  Aligned_cols=79  Identities=25%  Similarity=0.295  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc---CCc-E--EEcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---GVT-E--FVNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l---ga~-~--v~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+.++++++..+.+. .+   +.. .  ..|-.+  .+.+.+...+..  .
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   81 (250)
T PRK07774          5 DDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSD--PDSAKAMADATVSAF   81 (250)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            4678999997 9999999998888899 8999998876543332 11   211 1  233332  122222222221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        82 ~~id~vi~~ag~   93 (250)
T PRK07774         82 GGIDYLVNNAAI   93 (250)
T ss_pred             CCCCEEEECCCC
Confidence            369999999884

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.46  E-value=0.037  Score=50.54  Aligned_cols=45  Identities=33%  Similarity=0.319  Sum_probs=39.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      .++.++||+|+|+.+.+++..+...|+++|+++.|+.+|.+.+.+
T Consensus       124 ~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~  168 (283)
T COG0169         124 VTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELAD  168 (283)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence            357999999999999999999999998899999999988776654

>PRK07062 short chain dehydrogenase; Provisional

Probab=95.46  E-value=0.079  Score=47.99  Aligned_cols=79  Identities=22%  Similarity=0.250  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c-----CCcE---EEcCCCCCCccHHHHHHhhc-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F-----GVTE---FVNSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l-----ga~~---v~~~~~~~~~~~~~~i~~~~-  269 (388)
                      .+.++||+|+ +.+|.+.++.+...|+ +|+.+++++++.+.+.+ +     +...   ..|-.+  .+.+.+.+.+.. 
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   83 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLD--EADVAAFAAAVEA   83 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999999988999 89999988776543321 1     1111   224333  122333233222 


Q ss_pred             -CCCccEEEEccCC
Q 016507          270 -DGGADYCFECVGL  282 (388)
Q Consensus       270 -~g~~dvvid~~g~  282 (388)
                       -+++|+++++.|.
T Consensus        84 ~~g~id~li~~Ag~   97 (265)
T PRK07062         84 RFGGVDMLVNNAGQ   97 (265)
T ss_pred             hcCCCCEEEECCCC
Confidence             1379999999874

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=95.45  E-value=0.088  Score=47.35  Aligned_cols=79  Identities=24%  Similarity=0.318  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+.+++++++.+.+    +..|... .  .|-.+  .+.+.+.+.+..  .
T Consensus         9 ~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   85 (255)
T PRK07523          9 TGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTD--HDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            4789999987 9999999998888899 899998887654432    2223221 2  23333  123333333222  2


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      ++.|++|++.|.
T Consensus        86 ~~~d~li~~ag~   97 (255)
T PRK07523         86 GPIDILVNNAGM   97 (255)
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.44  E-value=0.06  Score=49.50  Aligned_cols=76  Identities=13%  Similarity=0.019  Sum_probs=51.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE-EEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~-v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .+.+|||+|+|++|.+++..+...|+.+|+++.|+.+|.+.+. .++... +....     .+ +.+.... ..+|+||+
T Consensus       124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~-----~~-~~~~~~~-~~~DiVIn  196 (282)
T TIGR01809       124 AGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLE-----GD-SGGLAIE-KAAEVLVS  196 (282)
T ss_pred             CCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceecc-----ch-hhhhhcc-cCCCEEEE
Confidence            5789999999999999999999999989999999988776543 333211 11000     00 1111111 27899999


Q ss_pred             ccCCH
Q 016507          279 CVGLA  283 (388)
Q Consensus       279 ~~g~~  283 (388)
                      |++..
T Consensus       197 aTp~g  201 (282)
T TIGR01809       197 TVPAD  201 (282)
T ss_pred             CCCCC
Confidence            98764

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.44  E-value=0.24  Score=39.95  Aligned_cols=35  Identities=31%  Similarity=0.391  Sum_probs=30.2

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ..+|+|.|+|++|..++..+...|+.++..+|.+.
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            46899999999999999999888998999997654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02780 ketoreductase/ oxidoreductase

Probab=95.41  E-value=0.078  Score=49.76  Aligned_cols=80  Identities=18%  Similarity=0.170  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-----cC-Cc---EEEcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FG-VT---EFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-----lg-a~---~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .|.++||+|+ |++|.+.++.+...|+ +|+.+++++++.+.+.+     .+ ..   ...|-.+ +..+..+.+.+..+
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~-~~~~~~~~l~~~~~  129 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG-DIDEGVKRIKETIE  129 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC-CcHHHHHHHHHHhc
Confidence            4789999997 9999998887777899 89999999887654322     11 11   1234332 11233444554444


Q ss_pred             C-CccEEEEccCC
Q 016507          271 G-GADYCFECVGL  282 (388)
Q Consensus       271 g-~~dvvid~~g~  282 (388)
                      + .+|+++++.|.
T Consensus       130 ~~didilVnnAG~  142 (320)
T PLN02780        130 GLDVGVLINNVGV  142 (320)
T ss_pred             CCCccEEEEecCc
Confidence            4 67799998763

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.41  E-value=0.099  Score=47.43  Aligned_cols=78  Identities=19%  Similarity=0.259  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE---EEcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE---FVNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~---v~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+    ...+...   .+|..+  ...+.+.+.+..  .
T Consensus         8 ~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~i~~~~~~~~~~~   84 (264)
T PRK07576          8 AGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRD--YAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5789999987 9999999998888999 899998877654322    2223221   233333  122333333322  1


Q ss_pred             CCccEEEEccC
Q 016507          271 GGADYCFECVG  281 (388)
Q Consensus       271 g~~dvvid~~g  281 (388)
                      +++|++|.+.|
T Consensus        85 ~~iD~vi~~ag   95 (264)
T PRK07576         85 GPIDVLVSGAA   95 (264)
T ss_pred             CCCCEEEECCC
Confidence            37899998875

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=95.40  E-value=0.24  Score=43.35  Aligned_cols=103  Identities=18%  Similarity=0.234  Sum_probs=68.8

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHH----cCCcE-EEcCCCCCCccHHHHHHhh
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTE-FVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~----lga~~-v~~~~~~~~~~~~~~i~~~  268 (388)
                      ..++.+...+||=+|. .+|..++.+|..+. -.+++.++.++++.+.+++    .|.+. +.-...   .+..+.+.+.
T Consensus        53 ~L~~~~~~k~iLEiGT-~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~---gdal~~l~~~  128 (219)
T COG4122          53 LLARLSGPKRILEIGT-AIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG---GDALDVLSRL  128 (219)
T ss_pred             HHHHhcCCceEEEeec-ccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec---CcHHHHHHhc
Confidence            3455678888999875 34777778887665 2389999999999888775    46654 211111   1344555553


Q ss_pred             cCCCccEEE-EccCC--HHHHHHHHHHhhcCCceEEE
Q 016507          269 TDGGADYCF-ECVGL--ASLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       269 ~~g~~dvvi-d~~g~--~~~~~~~~~~l~~~~G~~v~  302 (388)
                      ..+.||+|| |+--.  +..++.+++.+++| |.++.
T Consensus       129 ~~~~fDliFIDadK~~yp~~le~~~~lLr~G-Gliv~  164 (219)
T COG4122         129 LDGSFDLVFIDADKADYPEYLERALPLLRPG-GLIVA  164 (219)
T ss_pred             cCCCccEEEEeCChhhCHHHHHHHHHHhCCC-cEEEE
Confidence            345899994 55433  34489999999996 66653

>PRK06194 hypothetical protein; Provisional

Probab=95.40  E-value=0.092  Score=48.16  Aligned_cols=79  Identities=22%  Similarity=0.310  Sum_probs=49.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHc---CCcE-EE--cCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF---GVTE-FV--NSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~l---ga~~-v~--~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|++++++.++.+.+ ..+   +... ++  |-.+  .+.+.+.+....  .
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~   81 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD--AAQVEALADAALERF   81 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            3678999987 9999999988888899 899998876654432 222   3321 12  3222  122322222221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        82 g~id~vi~~Ag~   93 (287)
T PRK06194         82 GAVHLLFNNAGV   93 (287)
T ss_pred             CCCCEEEECCCC
Confidence            368999999875

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=95.39  E-value=0.45  Score=43.67  Aligned_cols=60  Identities=23%  Similarity=0.238  Sum_probs=44.9

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC---CchHHHHHHHcCCcEEEcCC
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~---~~~~~~~~~~lga~~v~~~~  254 (388)
                      .+...+++|.+|+=--+|..|.+.+.+|+..|+ +++.+..   +.+|.++++.+|+.-++...
T Consensus        54 e~~G~l~pG~tIVE~TSGNTGI~LA~vaa~~Gy-~~iivmP~~~S~er~~~l~a~GAevi~t~~  116 (300)
T COG0031          54 EKRGLLKPGGTIVEATSGNTGIALAMVAAAKGY-RLIIVMPETMSQERRKLLRALGAEVILTPG  116 (300)
T ss_pred             HHcCCCCCCCEEEEcCCChHHHHHHHHHHHcCC-cEEEEeCCCCCHHHHHHHHHcCCEEEEcCC
Confidence            445669999955544459999999999999999 5555433   56888999999997665443

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.094  Score=47.79  Aligned_cols=78  Identities=21%  Similarity=0.318  Sum_probs=49.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcC-----Cc-EEE--cCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG-----VT-EFV--NSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lg-----a~-~v~--~~~~~~~~~~~~~i~~~~~  270 (388)
                      ++.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.. ..+.     .. .++  |-.+  ...+.+.+.+...
T Consensus         6 ~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (276)
T PRK05875          6 QDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD--EDQVARAVDAATA   82 (276)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC--HHHHHHHHHHHHH
Confidence            4679999997 9999999999988999 899998877654332 2221     11 122  3322  1223333333221


Q ss_pred             --CCccEEEEccC
Q 016507          271 --GGADYCFECVG  281 (388)
Q Consensus       271 --g~~dvvid~~g  281 (388)
                        +++|++|.+.|
T Consensus        83 ~~~~~d~li~~ag   95 (276)
T PRK05875         83 WHGRLHGVVHCAG   95 (276)
T ss_pred             HcCCCCEEEECCC
Confidence              37899999887

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.38  E-value=0.13  Score=47.47  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ..+.++||+|+|++|.+++..+...|+++|+++.+++
T Consensus       124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            3567899999999999988888889997799998886

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.35  E-value=0.095  Score=47.21  Aligned_cols=79  Identities=16%  Similarity=0.148  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc---CCcE---EEcCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF---GVTE---FVNSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l---ga~~---v~~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+..+.+   +...   ..|..+  .+.+...+.+...  +
T Consensus         6 ~~~~ilItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   82 (258)
T PRK08628          6 KDKVVIVTGGASGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTD--DAQCRDAVEQTVAKFG   82 (258)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhcC
Confidence            4678999997 9999998888888899 788888877765444332   3221   223222  1223333333221  3


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|.+.|.
T Consensus        83 ~id~vi~~ag~   93 (258)
T PRK08628         83 RIDGLVNNAGV   93 (258)
T ss_pred             CCCEEEECCcc
Confidence            79999999983

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=95.35  E-value=0.14  Score=49.18  Aligned_cols=102  Identities=17%  Similarity=0.166  Sum_probs=67.4

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCC
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      +.+..+--.+.+|||+|+|-+|..++..+...|+.+|++.-|+.+|.+ +++++|+..+ ..+     ++.+.+.     
T Consensus       169 A~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~-~l~-----el~~~l~-----  237 (414)
T COG0373         169 AKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAV-ALE-----ELLEALA-----  237 (414)
T ss_pred             HHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeee-cHH-----HHHHhhh-----
Confidence            333333347889999999999999999999999889999998888765 5677885432 211     1222221     


Q ss_pred             CccEEEEccCCHHH---HHHHHHHhhcCCc-eEEEEcc
Q 016507          272 GADYCFECVGLASL---VQEAYACCRKGWG-KTIVLGV  305 (388)
Q Consensus       272 ~~dvvid~~g~~~~---~~~~~~~l~~~~G-~~v~~g~  305 (388)
                      .+|+||.+++.+..   .......+..... -+++++.
T Consensus       238 ~~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiav  275 (414)
T COG0373         238 EADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAV  275 (414)
T ss_pred             hCCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecC
Confidence            79999999987632   1233333333212 4566665

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.34  E-value=0.11  Score=45.89  Aligned_cols=74  Identities=19%  Similarity=0.246  Sum_probs=48.7

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +++|+|+ |.+|...++.+...|+ +|+.+++++++.+.+ +.+++..+ .|-.+  .+.+.+.+.+. .+.+|+++++.
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~-~~~id~lv~~a   77 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGARRDDLEVAAKELDVDAIVCDNTD--PASLEEARGLF-PHHLDTIVNVP   77 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCcEEecCCCC--HHHHHHHHHHH-hhcCcEEEECC
Confidence            5899987 9999999998888899 899998887776543 34444332 33333  12233333322 23689999886


Q ss_pred             C
Q 016507          281 G  281 (388)
Q Consensus       281 g  281 (388)
                      |
T Consensus        78 g   78 (223)
T PRK05884         78 A   78 (223)
T ss_pred             C
Confidence            5

>PLN02366 spermidine synthase

Probab=95.34  E-value=0.21  Score=46.39  Aligned_cols=105  Identities=14%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-CC-cEEEcCCCC--CCccHHHHHHhhcCCCcc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV-TEFVNSKNC--GDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-ga-~~v~~~~~~--~~~~~~~~i~~~~~g~~d  274 (388)
                      ....++|||+|+|. |.++..++++.+..+|.+++.+++-.+.++++ .. ...++....  -..+-.+.+++..++.||
T Consensus        89 ~~~pkrVLiIGgG~-G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yD  167 (308)
T PLN02366         89 IPNPKKVLVVGGGD-GGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYD  167 (308)
T ss_pred             CCCCCeEEEEcCCc-cHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCC
Confidence            35578999998766 66677888887766899999988877777763 21 000100000  002233334433234899


Q ss_pred             EEEEccCC----------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          275 YCFECVGL----------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       275 vvid~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +||--...          ...++.+.+.|+++ |.++..+.
T Consensus       168 vIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pg-Gvlv~q~~  207 (308)
T PLN02366        168 AIIVDSSDPVGPAQELFEKPFFESVARALRPG-GVVCTQAE  207 (308)
T ss_pred             EEEEcCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEECcC
Confidence            99653322          13367888999997 99876543

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.33  E-value=0.17  Score=43.88  Aligned_cols=82  Identities=27%  Similarity=0.344  Sum_probs=56.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      -.|.+|+|.|.|.+|..+++.+...|+ +|+++++++++.+.+.. +++. .++.++         +..   ...|+++-
T Consensus        26 l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~~~~~~~~~~~~g~~-~v~~~~---------l~~---~~~Dv~vp   91 (200)
T cd01075          26 LEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADINEEAVARAAELFGAT-VVAPEE---------IYS---VDADVFAP   91 (200)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE-EEcchh---------hcc---ccCCEEEe
Confidence            357899999999999999999999999 99999988887665544 4653 333211         111   16899997


Q ss_pred             ccCCHHHHHHHHHHhhc
Q 016507          279 CVGLASLVQEAYACCRK  295 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~  295 (388)
                      |......-...++.+..
T Consensus        92 ~A~~~~I~~~~~~~l~~  108 (200)
T cd01075          92 CALGGVINDDTIPQLKA  108 (200)
T ss_pred             cccccccCHHHHHHcCC
Confidence            65544334455566643

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08643 acetoin reductase; Validated

Probab=95.32  E-value=0.1  Score=46.99  Aligned_cols=78  Identities=17%  Similarity=0.190  Sum_probs=49.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE-E--EcCCCCCCccHHHHHHhhc--CC
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-F--VNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~-v--~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      +.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+..    .+... .  .|-.+  .+.+.+.+.+..  .+
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~   78 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSD--RDQVFAAVRQVVDTFG   78 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            468899987 9999999998888899 89999888766543322    23221 1  23322  122333233221  13


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      +.|++|.+.|.
T Consensus        79 ~id~vi~~ag~   89 (256)
T PRK08643         79 DLNVVVNNAGV   89 (256)
T ss_pred             CCCEEEECCCC
Confidence            79999999864

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.31  E-value=0.1  Score=46.60  Aligned_cols=78  Identities=22%  Similarity=0.215  Sum_probs=49.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-EEE--cCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~v~--~~~~~~~~~~~~~i~~~~~--  270 (388)
                      ++.++||+|+ |.+|..+++.+...|+ +|+.++++.++.+.+.+    .+.. .++  |..+  ...+.+.+.++..  
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~   78 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKGGNAQAFACDITD--RDSVDTAVAAAEQAL   78 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4678999997 9999999998888899 89999887765543322    2221 122  2222  1223333333221  


Q ss_pred             CCccEEEEccC
Q 016507          271 GGADYCFECVG  281 (388)
Q Consensus       271 g~~dvvid~~g  281 (388)
                      ++.|++|.+.|
T Consensus        79 ~~~d~vi~~ag   89 (250)
T TIGR03206        79 GPVDVLVNNAG   89 (250)
T ss_pred             CCCCEEEECCC
Confidence            37899999987

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.29  E-value=0.21  Score=40.72  Aligned_cols=32  Identities=28%  Similarity=0.453  Sum_probs=28.9

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      +|+|+|.|++|...++.+...|..++..+|.+
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48999999999999999999999889999765

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.28  E-value=0.11  Score=46.83  Aligned_cols=79  Identities=20%  Similarity=0.384  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|++++++.++.+.+.    ..+... .  .|-.+  ...+.+.+.+...  
T Consensus        11 ~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d--~~~i~~~~~~~~~~~   87 (259)
T PRK08213         11 SGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGIDALWIAADVAD--EADIERLAEETLERF   87 (259)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5689999987 9999999998888899 8999998877655433    222221 2  23332  1223222222221  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|.+.|.
T Consensus        88 ~~id~vi~~ag~   99 (259)
T PRK08213         88 GHVDILVNNAGA   99 (259)
T ss_pred             CCCCEEEECCCC
Confidence            378999999874

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.11  Score=46.69  Aligned_cols=79  Identities=16%  Similarity=0.187  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-EEE--cCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~v~--~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+.++++.++.+.+.+    .+.. +.+  |..+  .....+.+.+...  
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   83 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGE--MEQIDALFAHIRERH   83 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            3578999987 9999999999888899 89999987765543322    2321 122  3322  1223333333221  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +.+|+++++.+.
T Consensus        84 ~~id~li~~ag~   95 (252)
T PRK07035         84 GRLDILVNNAAA   95 (252)
T ss_pred             CCCCEEEECCCc
Confidence            368999998873

>PRK06198 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.1  Score=47.01  Aligned_cols=81  Identities=19%  Similarity=0.191  Sum_probs=51.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH----HHHHcCCcE---EEcCCCCCCccHHHHHHhhc--
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE----IGKRFGVTE---FVNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~----~~~~lga~~---v~~~~~~~~~~~~~~i~~~~--  269 (388)
                      ..+.+++|+|+ |.+|..+++.+...|++.|+++++++++.+    .++..+...   ..|..+  ...+.+.+....  
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSD--VEDCRRVVAAADEA   81 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            35678999997 999999999998899944999988765543    222334322   224333  122332222221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      -+++|++|++.|.
T Consensus        82 ~g~id~li~~ag~   94 (260)
T PRK06198         82 FGRLDALVNAAGL   94 (260)
T ss_pred             hCCCCEEEECCCc
Confidence            1379999999874

>PRK06172 short chain dehydrogenase; Provisional

Probab=95.28  E-value=0.1  Score=46.78  Aligned_cols=79  Identities=24%  Similarity=0.311  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCc-EE--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT-EF--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~-~v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+    +..+.. ..  .|-.+  ...+.+.+.+..  .
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   82 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAGGEALFVACDVTR--DAEVKALVEQTIAAY   82 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHh
Confidence            4679999997 9999999988888899 899999887654332    223322 12  23222  122222222221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|+++.+.|.
T Consensus        83 g~id~li~~ag~   94 (253)
T PRK06172         83 GRLDYAFNNAGI   94 (253)
T ss_pred             CCCCEEEECCCC
Confidence            378999998874

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.27  E-value=0.11  Score=47.16  Aligned_cols=80  Identities=24%  Similarity=0.274  Sum_probs=48.4

Q ss_pred             CCCCEEEEEcc-c--hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEE--EcCCCCCCccHHHHHHhhcC
Q 016507          200 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       200 ~~~~~VlI~Ga-g--~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ..+.++||+|+ +  ++|.+.++.+...|+ +|+..++++...+.++    .+|....  .|-.+  .+...+.+.+...
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~--~~~v~~~~~~~~~   82 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTN--PKSISNLFDDIKE   82 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCchHHHHHHHHHHHhcCCceEEEccCCC--HHHHHHHHHHHHH
Confidence            35678999987 4  799998888878899 8888877642222222    2343332  34333  2333333333222


Q ss_pred             --CCccEEEEccCC
Q 016507          271 --GGADYCFECVGL  282 (388)
Q Consensus       271 --g~~dvvid~~g~  282 (388)
                        |++|+++++.|.
T Consensus        83 ~~g~iDilVnnag~   96 (260)
T PRK06603         83 KWGSFDFLLHGMAF   96 (260)
T ss_pred             HcCCccEEEEcccc
Confidence              379999998763

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.26  E-value=0.09  Score=45.54  Aligned_cols=100  Identities=16%  Similarity=0.255  Sum_probs=61.8

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCcEEEcCCCCCCccHHHHHHhhc
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      .+.....++.+||-+|.|. |..+..+++. |. +|++++.+++-.+.+++.    +...+ ....   .++.+.  .+ 
T Consensus        23 ~~~l~~~~~~~vLDiGcG~-G~~a~~La~~-g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v-~~~~---~d~~~~--~~-   92 (197)
T PRK11207         23 LEAVKVVKPGKTLDLGCGN-GRNSLYLAAN-GF-DVTAWDKNPMSIANLERIKAAENLDNL-HTAV---VDLNNL--TF-   92 (197)
T ss_pred             HHhcccCCCCcEEEECCCC-CHHHHHHHHC-CC-EEEEEeCCHHHHHHHHHHHHHcCCCcc-eEEe---cChhhC--Cc-
Confidence            3444566778999998765 7777777775 77 999999998776665542    22211 1000   111110  11 


Q ss_pred             CCCccEEEEccC----C----HHHHHHHHHHhhcCCceEEEEc
Q 016507          270 DGGADYCFECVG----L----ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       270 ~g~~dvvid~~g----~----~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      .+.||+|+....    .    ...+..+.+.|+++ |.++.+.
T Consensus        93 ~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~Lkpg-G~~~~~~  134 (197)
T PRK11207         93 DGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPG-GYNLIVA  134 (197)
T ss_pred             CCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence            237999987543    1    13367788888997 9865544

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.25  E-value=0.28  Score=44.32  Aligned_cols=78  Identities=17%  Similarity=0.261  Sum_probs=47.1

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHcCCcEEEEEcCCc---hHHHHH-HHc-CCc-E--EEcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVIS---EKFEIG-KRF-GVT-E--FVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga---g~vG~~ai~la~~~g~~~Vi~~~~~~---~~~~~~-~~l-ga~-~--v~~~~~~~~~~~~~~i~~~~  269 (388)
                      .+.++||+|+   +++|.++++.+...|+ +|+.+.++.   ++.+.+ .++ +.. .  ..|-.+  .+...+.+.+..
T Consensus         6 ~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   82 (257)
T PRK08594          6 EGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTS--DEEITACFETIK   82 (257)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcccchHHHHHHHHHcCCCceEEEecCCCC--HHHHHHHHHHHH
Confidence            4678999986   5999998888888899 888886543   233322 233 211 1  223333  233333333332


Q ss_pred             C--CCccEEEEccC
Q 016507          270 D--GGADYCFECVG  281 (388)
Q Consensus       270 ~--g~~dvvid~~g  281 (388)
                      .  |++|+++++.|
T Consensus        83 ~~~g~ld~lv~nag   96 (257)
T PRK08594         83 EEVGVIHGVAHCIA   96 (257)
T ss_pred             HhCCCccEEEECcc
Confidence            2  47999999876

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.24  E-value=0.12  Score=46.41  Aligned_cols=80  Identities=16%  Similarity=0.196  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c---CCc---EEEcCCCCCCccHHHHHHhhcC-
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F---GVT---EFVNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l---ga~---~v~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      ..+.+|||+|+ |.+|...+..+...|+ +|+++++++++.+.+.+ +   +..   ...|-.+  .+.+...+.+... 
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLGRRALAVPTDITD--EDQCANLVALALER   79 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCC--HHHHHHHHHHHHHH
Confidence            35678999987 9999999998888999 89999888766543322 2   322   1223322  1233333333221 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|.+.|.
T Consensus        80 ~g~~d~vi~~ag~   92 (258)
T PRK07890         80 FGRVDALVNNAFR   92 (258)
T ss_pred             cCCccEEEECCcc
Confidence             378999998874

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.24  E-value=0.11  Score=46.44  Aligned_cols=79  Identities=22%  Similarity=0.210  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc--CCc-EEE--cCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF--GVT-EFV--NSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l--ga~-~v~--~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|+++.++.++.+... .+  +.. .++  |-.+  ...+.+.+.+...  +
T Consensus         4 ~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~   80 (252)
T PRK06138          4 AGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIAAGGRAFARQGDVGS--AEAVEALVDFVAARWG   80 (252)
T ss_pred             CCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHcC
Confidence            4678999987 9999999988777898 8999988876544322 22  221 122  3222  1223333322221  3


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|+++.+.|.
T Consensus        81 ~id~vi~~ag~   91 (252)
T PRK06138         81 RLDVLVNNAGF   91 (252)
T ss_pred             CCCEEEECCCC
Confidence            79999999884

>PRK06181 short chain dehydrogenase; Provisional

Probab=95.23  E-value=0.12  Score=46.71  Aligned_cols=77  Identities=19%  Similarity=0.277  Sum_probs=49.3

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhcC--CC
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GG  272 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~  272 (388)
                      .+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.    ..+... +  .|-.+  ...+.+.+.+...  ++
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~   78 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHGGEALVVPTDVSD--AEACERLIEAAVARFGG   78 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHcCC
Confidence            57999987 9999999998888898 8999998876544322    223321 1  23222  1233333333221  37


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|++|.+.|.
T Consensus        79 id~vi~~ag~   88 (263)
T PRK06181         79 IDILVNNAGI   88 (263)
T ss_pred             CCEEEECCCc
Confidence            8999999874

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=95.23  E-value=0.096  Score=47.24  Aligned_cols=79  Identities=25%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH---cCCcE---EEcCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVTE---FVNSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~---lga~~---v~~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++...+...+   .+.+.   ..|-.+  .+...+.+.+...  +
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSELVHEVAAELRAAGGEALALTADLET--YAGAQAAMAAAVEAFG   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCC--HHHHHHHHHHHHHHcC
Confidence            4678999987 9999999998888899 89999887543333333   23322   233333  1223333333221  3


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|+++++.|.
T Consensus        84 ~id~lv~nAg~   94 (260)
T PRK12823         84 RIDVLINNVGG   94 (260)
T ss_pred             CCeEEEECCcc
Confidence            79999999873

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.23  E-value=0.052  Score=44.68  Aligned_cols=95  Identities=19%  Similarity=0.173  Sum_probs=56.2

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC---CCccHHHHHHhhcCCCccEEEEccC
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC---GDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~---~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      |+|+|+|++|...+..++..|. +|..+.+.+ +.+.+++.|........+.   ........  ....+.+|+||-|+=
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAP--SADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSH--GHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcc--hhccCCCcEEEEEec
Confidence            6899999999998888877898 899998887 7777776664321111000   00000000  011138999999986


Q ss_pred             CHHHHHHHHHHhhc----CCceEEEEcc
Q 016507          282 LASLVQEAYACCRK----GWGKTIVLGV  305 (388)
Q Consensus       282 ~~~~~~~~~~~l~~----~~G~~v~~g~  305 (388)
                      ... ...+++.+++    + ..++.+.+
T Consensus        77 a~~-~~~~l~~l~~~~~~~-t~iv~~qN  102 (151)
T PF02558_consen   77 AYQ-LEQALQSLKPYLDPN-TTIVSLQN  102 (151)
T ss_dssp             GGG-HHHHHHHHCTGEETT-EEEEEESS
T ss_pred             ccc-hHHHHHHHhhccCCC-cEEEEEeC
Confidence            654 4444444444    3 45665544

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK07063 short chain dehydrogenase; Provisional

Probab=95.22  E-value=0.11  Score=46.84  Aligned_cols=79  Identities=20%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc-----CCc-EE--EcCCCCCCccHHHHHHhhc-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVT-EF--VNSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l-----ga~-~v--~~~~~~~~~~~~~~i~~~~-  269 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|+.+++++++.+.+. .+     +.. .+  .|-.+  .+++.+.+.+.. 
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   82 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTD--AASVAAAVAAAEE   82 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999998888999 8999988776654332 22     211 11  23322  122333333222 


Q ss_pred             -CCCccEEEEccCC
Q 016507          270 -DGGADYCFECVGL  282 (388)
Q Consensus       270 -~g~~dvvid~~g~  282 (388)
                       .+++|++|++.|.
T Consensus        83 ~~g~id~li~~ag~   96 (260)
T PRK07063         83 AFGPLDVLVNNAGI   96 (260)
T ss_pred             HhCCCcEEEECCCc
Confidence             1379999999873

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.21  E-value=0.14  Score=45.59  Aligned_cols=79  Identities=20%  Similarity=0.230  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|..++..+...|+ +|+++++++++.+.+.+    .+... +  .|-.+  .+.+...+.+...  
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTGVKAAAYSIDLSN--PEAIAPGIAELLEQF   81 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4568999987 9999999998888899 89999998766544322    22221 1  23222  1233333333221  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      ++.|+++.+.|.
T Consensus        82 ~~id~lv~~ag~   93 (241)
T PRK07454         82 GCPDVLINNAGM   93 (241)
T ss_pred             CCCCEEEECCCc
Confidence            369999999874

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.21  E-value=0.16  Score=38.08  Aligned_cols=85  Identities=25%  Similarity=0.265  Sum_probs=54.2

Q ss_pred             EEEEEccchhHHHHHHHHHHcC---CcEEE-EEcCCchHHHHH-HHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          204 TVVIFGLGSIGLAVAEGARLCG---ATRII-GVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g---~~~Vi-~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      +|.|+|+|.+|.+.+.-+...|   . +|+ +..+++++.+.+ +++++....       .+..+.+.     ..|+||-
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~-~v~~~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~-----~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPH-EVIIVSSRSPEKAAELAKEYGVQATA-------DDNEEAAQ-----EADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GG-EEEEEEESSHHHHHHHHHHCTTEEES-------EEHHHHHH-----HTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCce-eEEeeccCcHHHHHHHHHhhcccccc-------CChHHhhc-----cCCEEEE
Confidence            5788899999999998888877   5 787 448888887765 456654332       12333332     5799999


Q ss_pred             ccCCHHHHHHHHHH---hhcCCceEEEE
Q 016507          279 CVGLASLVQEAYAC---CRKGWGKTIVL  303 (388)
Q Consensus       279 ~~g~~~~~~~~~~~---l~~~~G~~v~~  303 (388)
                      |+.... +...++.   ..++ ..++.+
T Consensus        68 av~p~~-~~~v~~~i~~~~~~-~~vis~   93 (96)
T PF03807_consen   68 AVKPQQ-LPEVLSEIPHLLKG-KLVISI   93 (96)
T ss_dssp             -S-GGG-HHHHHHHHHHHHTT-SEEEEE
T ss_pred             EECHHH-HHHHHHHHhhccCC-CEEEEe
Confidence            998765 4444443   3443 455544

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=95.20  E-value=0.093  Score=47.67  Aligned_cols=107  Identities=19%  Similarity=0.324  Sum_probs=74.2

Q ss_pred             hHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-E--EEcCCCCCCccH
Q 016507          189 GVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-E--FVNSKNCGDKSV  261 (388)
Q Consensus       189 a~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~--v~~~~~~~~~~~  261 (388)
                      ++..+.+.+++++|.+||=+|-|- |.+++.+|+..|+ +|++++-|+++.+.+++    .|.. .  +.-.+-   .++
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGW-G~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~---rd~  134 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGW-GGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY---RDF  134 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCh-hHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc---ccc
Confidence            444567889999999999998765 6777788888899 99999999998877765    4543 1  221111   111


Q ss_pred             HHHHHhhcCCCccEEE-----EccCC---HHHHHHHHHHhhcCCceEEEEccCCCC
Q 016507          262 SQIIIDMTDGGADYCF-----ECVGL---ASLVQEAYACCRKGWGKTIVLGVDQPG  309 (388)
Q Consensus       262 ~~~i~~~~~g~~dvvi-----d~~g~---~~~~~~~~~~l~~~~G~~v~~g~~~~~  309 (388)
                              .+.||-|+     +.+|.   +.-+..+.+.|+++ |++..-......
T Consensus       135 --------~e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~-G~~llh~I~~~~  181 (283)
T COG2230         135 --------EEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPG-GRMLLHSITGPD  181 (283)
T ss_pred             --------ccccceeeehhhHHHhCcccHHHHHHHHHhhcCCC-ceEEEEEecCCC
Confidence                    12477764     34454   23378899999998 999877664433

>PRK12367 short chain dehydrogenase; Provisional

Probab=95.18  E-value=0.14  Score=45.93  Aligned_cols=73  Identities=21%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-hHHHHHHHcCCcE--EEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~~~~~lga~~--v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++ +..+.... +...  ..|-.+   .   +.+.+.. ++.|++
T Consensus        13 ~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~~~~~~~~~~-~~~~~~~~D~~~---~---~~~~~~~-~~iDil   83 (245)
T PRK12367         13 QGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSKINNSESNDE-SPNEWIKWECGK---E---ESLDKQL-ASLDVL   83 (245)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCchhhhhhhcc-CCCeEEEeeCCC---H---HHHHHhc-CCCCEE
Confidence            3679999987 9999999998888999 899888776 22222111 1112  233332   1   2233322 379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.|.
T Consensus        84 VnnAG~   89 (245)
T PRK12367         84 ILNHGI   89 (245)
T ss_pred             EECCcc
Confidence            999874

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.17  E-value=0.19  Score=44.98  Aligned_cols=35  Identities=29%  Similarity=0.421  Sum_probs=31.0

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +.+|+|+|+|++|..+++.+...|..+++.+|.+.
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~   58 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT   58 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence            46899999999999999999999998999987654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.14  Score=46.26  Aligned_cols=79  Identities=23%  Similarity=0.334  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c--CCc-EE--EcCCCCCCccHHHHHHhhc-CCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F--GVT-EF--VNSKNCGDKSVSQIIIDMT-DGG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l--ga~-~v--~~~~~~~~~~~~~~i~~~~-~g~  272 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.. +  +.. +.  .|-.+  ...+.+.+.... .++
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~~   80 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARLPYPGRHRWVVADLTS--EAGREAVLARAREMGG   80 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHhcCC
Confidence            4678999987 9999999988888899 89999988776654432 2  211 12  23222  122222222111 247


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+++.+.|.
T Consensus        81 id~lv~~ag~   90 (263)
T PRK09072         81 INVLINNAGV   90 (263)
T ss_pred             CCEEEECCCC
Confidence            9999999875

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.17  E-value=0.35  Score=37.64  Aligned_cols=93  Identities=19%  Similarity=0.111  Sum_probs=61.9

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHH
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS  284 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~  284 (388)
                      |+|.|.|.+|...++.++..+. +|++++.++++.+.++..|...+. -+.    .-.+.+++..-..++.++-+++.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~-~vvvid~d~~~~~~~~~~~~~~i~-gd~----~~~~~l~~a~i~~a~~vv~~~~~d~   74 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGI-DVVVIDRDPERVEELREEGVEVIY-GDA----TDPEVLERAGIEKADAVVILTDDDE   74 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTS-EEEEEESSHHHHHHHHHTTSEEEE-S-T----TSHHHHHHTTGGCESEEEEESSSHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCC-EEEEEECCcHHHHHHHhccccccc-ccc----hhhhHHhhcCccccCEEEEccCCHH
Confidence            6788999999999999998666 899999999999999988865443 221    2233444442238999998888775


Q ss_pred             HHHH---HHHHhhcCCceEEEEc
Q 016507          285 LVQE---AYACCRKGWGKTIVLG  304 (388)
Q Consensus       285 ~~~~---~~~~l~~~~G~~v~~g  304 (388)
                      .-..   ..+.+.+. .+++...
T Consensus        75 ~n~~~~~~~r~~~~~-~~ii~~~   96 (116)
T PF02254_consen   75 ENLLIALLARELNPD-IRIIARV   96 (116)
T ss_dssp             HHHHHHHHHHHHTTT-SEEEEEE
T ss_pred             HHHHHHHHHHHHCCC-CeEEEEE
Confidence            3223   33334443 5555443

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08703 short chain dehydrogenase; Provisional

Probab=95.17  E-value=0.12  Score=45.97  Aligned_cols=81  Identities=23%  Similarity=0.288  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCC-c---EEEcCCCCCCcc---HHHHHHhh
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-T---EFVNSKNCGDKS---VSQIIIDM  268 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga-~---~v~~~~~~~~~~---~~~~i~~~  268 (388)
                      ++.+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+.    +.+. +   .-.|..+.....   +.+.+.+.
T Consensus         5 ~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          5 SDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            4678999987 9999999988888899 8999999887654332    1121 1   112321100012   23333333


Q ss_pred             cCCCccEEEEccCC
Q 016507          269 TDGGADYCFECVGL  282 (388)
Q Consensus       269 ~~g~~dvvid~~g~  282 (388)
                      ..+.+|++|.+.|.
T Consensus        84 ~~~~id~vi~~ag~   97 (239)
T PRK08703         84 TQGKLDGIVHCAGY   97 (239)
T ss_pred             hCCCCCEEEEeccc
Confidence            33478999999884

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=95.15  E-value=0.11  Score=46.81  Aligned_cols=78  Identities=21%  Similarity=0.243  Sum_probs=48.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-H----cCC--cEEE--cCCCCCCccHHHHHHhhc--
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R----FGV--TEFV--NSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~----lga--~~v~--~~~~~~~~~~~~~i~~~~--  269 (388)
                      +.+|||+|+ |.+|...++.+...|+ +|+.++++..+.+.+. .    .+.  -+.+  |-.+  .......+.+..  
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~   78 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS--EQSVLALSRGVDEI   78 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC--HHHHHHHHHHHHHH
Confidence            468999987 9999999988888899 8999988776543322 1    121  1122  3222  122222222221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .++.|+++++.|.
T Consensus        79 ~~~id~vv~~ag~   91 (259)
T PRK12384         79 FGRVDLLVYNAGI   91 (259)
T ss_pred             cCCCCEEEECCCc
Confidence            1378999998873

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.14  E-value=0.058  Score=49.02  Aligned_cols=76  Identities=22%  Similarity=0.288  Sum_probs=50.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhcC--CCccEEE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYCF  277 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~~--g~~dvvi  277 (388)
                      +.+|+|+|+ |.+|...++.+...|+ +|+++++++++.+...  ++.. ..|..+  .+.+.+.+.+...  +++|++|
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~--~~~~~~~D~~d--~~~~~~~~~~~~~~~g~~d~li   78 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRNPARAAPIP--GVELLELDVTD--DASVQAAVDEVIARAGRIDVLV   78 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCChhhccccC--CCeeEEeecCC--HHHHHHHHHHHHHhCCCCCEEE
Confidence            468999987 9999999988888899 8999988766543221  2222 233333  2334443433322  3799999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      ++.|.
T Consensus        79 ~~ag~   83 (270)
T PRK06179         79 NNAGV   83 (270)
T ss_pred             ECCCC
Confidence            99985

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=95.12  E-value=0.071  Score=46.29  Aligned_cols=35  Identities=37%  Similarity=0.441  Sum_probs=31.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      ...+|+|+|+|++|...++.+...|..+++.+|.+
T Consensus        20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            34679999999999999999999999889999887

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.11  E-value=0.13  Score=47.02  Aligned_cols=79  Identities=24%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+    +..+... .  .|-.+  ..++.+.+.+..  .
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   81 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRH--REEVTHLADEAFRLL   81 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999998888999 899888877655432    2234322 1  23222  122332222221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        82 g~id~li~nAg~   93 (275)
T PRK05876         82 GHVDVVFSNAGI   93 (275)
T ss_pred             CCCCEEEECCCc
Confidence            378999998873

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.14  Score=45.67  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=47.5

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC--CcE-EEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg--a~~-v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .++||+|+ |.+|...+..+...|+ +|+++++++++.+.+...+  +.. ..|-.+  .+++.+.+.+. ....|+++.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~-~~~~d~~i~   77 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGW-QVIACGRNQSVLDELHTQSANIFTLAFDVTD--HPGTKAALSQL-PFIPELWIF   77 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCCCeEEEeeCCC--HHHHHHHHHhc-ccCCCEEEE
Confidence            46899987 9999998888878899 8999999888776655433  211 233333  13333333332 224677666


Q ss_pred             ccC
Q 016507          279 CVG  281 (388)
Q Consensus       279 ~~g  281 (388)
                      +.|
T Consensus        78 ~ag   80 (240)
T PRK06101         78 NAG   80 (240)
T ss_pred             cCc
Confidence            554

>PRK08267 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.15  Score=45.91  Aligned_cols=77  Identities=19%  Similarity=0.219  Sum_probs=51.1

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cC-Cc-E--EEcCCCCCCccHHHHHHhhc---CCCc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG-VT-E--FVNSKNCGDKSVSQIIIDMT---DGGA  273 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lg-a~-~--v~~~~~~~~~~~~~~i~~~~---~g~~  273 (388)
                      .++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.. ++ .. +  ..|-.+  ...+.+.+.+..   .+++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELGAGNAWTGALDVTD--RAAWDAALADFAAATGGRL   78 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            47999987 9999999998888899 89999888877655433 32 11 1  234333  123333333321   3479


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++.+.|.
T Consensus        79 d~vi~~ag~   87 (260)
T PRK08267         79 DVLFNNAGI   87 (260)
T ss_pred             CEEEECCCC
Confidence            999999875

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.09  E-value=0.13  Score=46.97  Aligned_cols=102  Identities=17%  Similarity=0.254  Sum_probs=63.4

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHcCCcEEEEEcCCch---HHHH-HHHcCCcEE--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEI-GKRFGVTEF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga---g~vG~~ai~la~~~g~~~Vi~~~~~~~---~~~~-~~~lga~~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+   +++|.++++.+-..|+ +|+.++++++   +.+. .++++....  .|-.+  .+...+.+.+... 
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~i~~~   80 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSK--PEHFKSLAESLKKD   80 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCC--HHHHHHHHHHHHHH
Confidence            4678999986   4899999988888899 8988887743   2222 233443322  34333  1233333333322 


Q ss_pred             -CCccEEEEccCCH-----------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          271 -GGADYCFECVGLA-----------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       271 -g~~dvvid~~g~~-----------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       |++|+++++.|..                             ...+..+..+..+ |+++.++..
T Consensus        81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~-g~Iv~isS~  145 (274)
T PRK08415         81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDG-ASVLTLSYL  145 (274)
T ss_pred             cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccC-CcEEEEecC
Confidence             4799999998741                             0124455566676 999988764

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.08  E-value=0.18  Score=47.53  Aligned_cols=36  Identities=28%  Similarity=0.294  Sum_probs=31.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .+.+|+|+|+|++|..+++.+...|..+++.+|.+.
T Consensus        23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            346799999999999999999999998999998764

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.07  E-value=0.31  Score=43.23  Aligned_cols=35  Identities=26%  Similarity=0.305  Sum_probs=30.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ..+|+|+|.|++|..+++.+...|..+++.+|.+.
T Consensus        21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~   55 (228)
T cd00757          21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV   55 (228)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            56899999999999999999999998998886544

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.07  E-value=0.13  Score=47.00  Aligned_cols=77  Identities=16%  Similarity=0.170  Sum_probs=49.9

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCC--c-EE--EcCCCCCCccHHHHHHhhcC-
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV--T-EF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga--~-~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      +.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+..    .+.  . .+  .|..+  .+.+.+ +.+... 
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~~~~-~~~~~~~   78 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD--QNSIHN-FQLVLKE   78 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC--HHHHHH-HHHHHHh
Confidence            568999997 9999999998888899 89999887766544322    221  1 12  23333  123333 333322 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|+++.+.|.
T Consensus        79 ~~~id~vv~~ag~   91 (280)
T PRK06914         79 IGRIDLLVNNAGY   91 (280)
T ss_pred             cCCeeEEEECCcc
Confidence             378999999874

>PLN00203 glutamyl-tRNA reductase

Probab=95.07  E-value=0.17  Score=50.40  Aligned_cols=74  Identities=18%  Similarity=0.272  Sum_probs=52.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcC-CcE-EEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG-VTE-FVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lg-a~~-v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+.+. .++ ... +...     .+..+.+     .+.|+||
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~-----~dl~~al-----~~aDVVI  334 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPL-----DEMLACA-----AEADVVF  334 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecH-----hhHHHHH-----hcCCEEE
Confidence            3689999999999999999999899878999999988876554 353 221 1111     1122222     2789999


Q ss_pred             EccCCHH
Q 016507          278 ECVGLAS  284 (388)
Q Consensus       278 d~~g~~~  284 (388)
                      .|++.+.
T Consensus       335 sAT~s~~  341 (519)
T PLN00203        335 TSTSSET  341 (519)
T ss_pred             EccCCCC
Confidence            9987653

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.07  E-value=0.14  Score=46.76  Aligned_cols=80  Identities=19%  Similarity=0.342  Sum_probs=48.8

Q ss_pred             CCCCCEEEEEcc---chhHHHHHHHHHHcCCcEEEEEcCCch---HHHH-HHHcCCcEE--EcCCCCCCccHHHHHHhhc
Q 016507          199 VEVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEI-GKRFGVTEF--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       199 ~~~~~~VlI~Ga---g~vG~~ai~la~~~g~~~Vi~~~~~~~---~~~~-~~~lga~~v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      +..+.++||+|+   +++|.+.++.+...|+ +|+.+.+++.   +.+. .++++....  .|-.+  .++..+.+.+..
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~   83 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTD--EASIDAVFETLE   83 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCchHHHHHHHHHHHhcCCceEEecCCCC--HHHHHHHHHHHH
Confidence            445788999986   5899999988888999 8888876542   2222 233453222  23222  123333333322


Q ss_pred             C--CCccEEEEccC
Q 016507          270 D--GGADYCFECVG  281 (388)
Q Consensus       270 ~--g~~dvvid~~g  281 (388)
                      .  ++.|+++++.|
T Consensus        84 ~~~g~iD~lv~nAG   97 (272)
T PRK08159         84 KKWGKLDFVVHAIG   97 (272)
T ss_pred             HhcCCCcEEEECCc
Confidence            2  37999999876

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=95.05  E-value=0.15  Score=46.18  Aligned_cols=80  Identities=21%  Similarity=0.336  Sum_probs=48.5

Q ss_pred             CCCCEEEEEcc---chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEE--EcCCCCCCccHHHHHHhhcC
Q 016507          200 EVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       200 ~~~~~VlI~Ga---g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ..+.++||+|+   +++|.+.++.+-..|+ +|+.+.+.+...+.+++    ++....  .|-.+  .++..+.+.+...
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   80 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVVDKLEERVRKMAAELDSELVFRCDVAS--DDEINQVFADLGK   80 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHhccCCceEEECCCCC--HHHHHHHHHHHHH
Confidence            35678999984   5899999888888999 88887665433333332    232222  23322  2333333333222


Q ss_pred             --CCccEEEEccCC
Q 016507          271 --GGADYCFECVGL  282 (388)
Q Consensus       271 --g~~dvvid~~g~  282 (388)
                        +++|+++++.|.
T Consensus        81 ~~g~iD~lVnnAG~   94 (261)
T PRK08690         81 HWDGLDGLVHSIGF   94 (261)
T ss_pred             HhCCCcEEEECCcc
Confidence              379999998864

>PRK00811 spermidine synthase; Provisional

Probab=95.05  E-value=0.18  Score=46.34  Aligned_cols=96  Identities=15%  Similarity=0.170  Sum_probs=63.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-C-----C--c---EEEcCCCCCCccHHHHHHhh
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-G-----V--T---EFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-g-----a--~---~v~~~~~~~~~~~~~~i~~~  268 (388)
                      ...++||++|+|. |..+..+++..+..+|.+++.+++-.+.+++. .     .  +   .++.      .+..+.+.+ 
T Consensus        75 ~~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~------~Da~~~l~~-  146 (283)
T PRK00811         75 PNPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVI------GDGIKFVAE-  146 (283)
T ss_pred             CCCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEE------CchHHHHhh-
Confidence            4567999998766 67777778877776999999999888887763 1     1  1   1221      223333433 


Q ss_pred             cCCCccEEEEccCC----------HHHHHHHHHHhhcCCceEEEEc
Q 016507          269 TDGGADYCFECVGL----------ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       269 ~~g~~dvvid~~g~----------~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ..+.||+||--...          ...++.+.+.|+++ |.++...
T Consensus       147 ~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~g-Gvlv~~~  191 (283)
T PRK00811        147 TENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKED-GIFVAQS  191 (283)
T ss_pred             CCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCC-cEEEEeC
Confidence            34489999754321          22256788999997 9988754

>PRK08263 short chain dehydrogenase; Provisional

Probab=95.04  E-value=0.13  Score=46.87  Aligned_cols=78  Identities=17%  Similarity=0.140  Sum_probs=50.3

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCc-EE--EcCCCCCCccHHHHHHhhc--CCCcc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT-EF--VNSKNCGDKSVSQIIIDMT--DGGAD  274 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~-~v--~~~~~~~~~~~~~~i~~~~--~g~~d  274 (388)
                      +.+|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.. ++.. ..  .|..+  .+.+.+.+.+..  .+++|
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~d   79 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARDTATLADLAEKYGDRLLPLALDVTD--RAAVFAAVETAVEHFGRLD   79 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhccCCeeEEEccCCC--HHHHHHHHHHHHHHcCCCC
Confidence            458999987 9999999888877898 89999988877655443 2211 12  23222  122333233221  13789


Q ss_pred             EEEEccCC
Q 016507          275 YCFECVGL  282 (388)
Q Consensus       275 vvid~~g~  282 (388)
                      ++|.+.|.
T Consensus        80 ~vi~~ag~   87 (275)
T PRK08263         80 IVVNNAGY   87 (275)
T ss_pred             EEEECCCC
Confidence            99999874

>PRK06483 dihydromonapterin reductase; Provisional

Probab=95.03  E-value=0.17  Score=44.88  Aligned_cols=78  Identities=15%  Similarity=0.112  Sum_probs=50.1

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-HHHHHHcCCcE-EEcCCCCCCccHHHHHHhhcC--CCccEE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  276 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~~--g~~dvv  276 (388)
                      +.++||+|+ |.+|...++.+...|+ +|++++++++. .+.++..++.. ..|-.+  ...+.+.+.+...  +++|++
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~l   78 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRTHYPAIDGLRQAGAQCIQADFST--NAGIMAFIDELKQHTDGLRAI   78 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCchhHHHHHHHcCCEEEEcCCCC--HHHHHHHHHHHHhhCCCccEE
Confidence            458999987 9999999998888899 89988887643 23344455432 123222  1233333333322  369999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      +++.|.
T Consensus        79 v~~ag~   84 (236)
T PRK06483         79 IHNASD   84 (236)
T ss_pred             EECCcc
Confidence            998874

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=95.03  E-value=0.16  Score=47.38  Aligned_cols=88  Identities=17%  Similarity=0.195  Sum_probs=57.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++.+     ++.....  .   .++.+.+.     ..|+|+.+.
T Consensus       135 ~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~~~~~~~-----~~~~~~~--~---~~l~e~l~-----~aDvvv~~l  198 (312)
T PRK15469        135 EDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSRSRKSWP-----GVQSFAG--R---EELSAFLS-----QTRVLINLL  198 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCCCCCC-----Cceeecc--c---ccHHHHHh-----cCCEEEECC
Confidence            57899999999999999999999999 9999987554321     2221110  1   22333222     567887777


Q ss_pred             CCHHHH-----HHHHHHhhcCCceEEEEcc
Q 016507          281 GLASLV-----QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~~-----~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.....     ...+..++++ ..+|.+|.
T Consensus       199 Plt~~T~~li~~~~l~~mk~g-a~lIN~aR  227 (312)
T PRK15469        199 PNTPETVGIINQQLLEQLPDG-AYLLNLAR  227 (312)
T ss_pred             CCCHHHHHHhHHHHHhcCCCC-cEEEECCC
Confidence            644322     2456677776 77777764

>PRK08264 short chain dehydrogenase; Validated

Probab=95.03  E-value=0.11  Score=46.24  Aligned_cols=75  Identities=19%  Similarity=0.205  Sum_probs=49.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc-EE--EcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EF--VNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~-~v--~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .+.++||+|+ |.+|..+++.+...|+++|+++++++++.+.   .+.. .+  .|-.+  .+.+.+.+...  +.+|++
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---~~~~~~~~~~D~~~--~~~~~~~~~~~--~~id~v   77 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---LGPRVVPLQLDVTD--PASVAAAAEAA--SDVTIL   77 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh---cCCceEEEEecCCC--HHHHHHHHHhc--CCCCEE
Confidence            4678999987 9999999998888898678988887765442   2221 12  23322  12233222221  268999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |.+.|.
T Consensus        78 i~~ag~   83 (238)
T PRK08264         78 VNNAGI   83 (238)
T ss_pred             EECCCc
Confidence            999886

>PF13823 ADH_N_assoc: Alcohol dehydrogenase GroES-associated; PDB: 2DPH_B

Probab=95.02  E-value=0.02  Score=30.57  Aligned_cols=22  Identities=18%  Similarity=0.271  Sum_probs=15.8

Q ss_pred             eeeeeecCCCCCeEEEEeecCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPP   39 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~   39 (388)
                      |||+++.++++ .+++++|.|.+
T Consensus         1 MkAv~y~G~~~-v~ve~VpdP~I   22 (23)
T PF13823_consen    1 MKAVVYHGPKD-VRVEEVPDPKI   22 (23)
T ss_dssp             -EEEEEEETTE-EEEEEE----S
T ss_pred             CcceEEeCCCc-eEEEECCCccc
Confidence            79999999998 99999998865

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.01  E-value=0.14  Score=46.09  Aligned_cols=79  Identities=23%  Similarity=0.315  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH--HHHHHHcCCcE---EEcCCCCCCccHHHHHHhhc--CCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTE---FVNSKNCGDKSVSQIIIDMT--DGG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~--~~~~~~lga~~---v~~~~~~~~~~~~~~i~~~~--~g~  272 (388)
                      .+.++||+|+ +.+|.++++.+...|+ +|+++++++..  .+.++..+.+.   ..|-.+  .++..+.+.+..  .++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g~   83 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEAPETQAQVEALGRKFHFITADLIQ--QKDIDSIVSQAVEVMGH   83 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHcCCeEEEEEeCCCC--HHHHHHHHHHHHHHcCC
Confidence            4788999987 9999999998888999 88888765421  22333444322   233333  123333333321  237


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+++++.|.
T Consensus        84 iD~lv~~ag~   93 (251)
T PRK12481         84 IDILINNAGI   93 (251)
T ss_pred             CCEEEECCCc
Confidence            9999998873

>PRK06482 short chain dehydrogenase; Provisional

Probab=95.00  E-value=0.14  Score=46.74  Aligned_cols=77  Identities=17%  Similarity=0.199  Sum_probs=50.3

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcE---EEcCCCCCCccHHHHHHhhcC--CCccE
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE---FVNSKNCGDKSVSQIIIDMTD--GGADY  275 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~---v~~~~~~~~~~~~~~i~~~~~--g~~dv  275 (388)
                      .++||+|+ |.+|..+++.+...|+ +|+++.+++++.+.+++ ++...   ..|..+  .+.+.+.+.+...  +++|+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   79 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPDALDDLKARYGDRLWVLQLDVTD--SAAVRAVVDRAFAALGRIDV   79 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            47999987 9999999988888898 89999988877665543 22211   123332  1223333333221  37899


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      +|.+.|.
T Consensus        80 vi~~ag~   86 (276)
T PRK06482         80 VVSNAGY   86 (276)
T ss_pred             EEECCCC
Confidence            9998874

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=94.99  E-value=0.33  Score=44.50  Aligned_cols=86  Identities=19%  Similarity=0.285  Sum_probs=57.0

Q ss_pred             EEEEEccchhHHHH-HHHHHHcCCcEEEEE-cCCchH--HHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          204 TVVIFGLGSIGLAV-AEGARLCGATRIIGV-DVISEK--FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       204 ~VlI~Gag~vG~~a-i~la~~~g~~~Vi~~-~~~~~~--~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +|.|+|+|.+|... ..+.+..+. ++.++ +.++++  +++++++|....++       ++.+.+..   ..+|+|+++
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~-elvaV~d~d~es~~la~A~~~Gi~~~~~-------~~e~ll~~---~dIDaV~ia   71 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHL-EMVAMVGIDPESDGLARARELGVKTSAE-------GVDGLLAN---PDIDIVFDA   71 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCc-EEEEEEeCCcccHHHHHHHHCCCCEEEC-------CHHHHhcC---CCCCEEEEC
Confidence            68899999999855 556665567 55554 445543  46677788764432       22222221   279999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEE
Q 016507          280 VGLASLVQEAYACCRKGWGKTI  301 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v  301 (388)
                      ++...+.+.+..++..| -+++
T Consensus        72 Tp~~~H~e~a~~al~aG-k~VI   92 (285)
T TIGR03215        72 TSAKAHARHARLLAELG-KIVI   92 (285)
T ss_pred             CCcHHHHHHHHHHHHcC-CEEE
Confidence            99998788888887774 4443

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=94.99  E-value=0.16  Score=45.80  Aligned_cols=79  Identities=25%  Similarity=0.390  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE-E--EcCCCCCCccHHHHHHhhc--CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~-v--~~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+.++++.++.+.+. .++... .  .|-.+  .....+.+.+..  .+++
T Consensus         5 ~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (257)
T PRK07067          5 QGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEIGPAAIAVSLDVTR--QDSIDRIVAAAVERFGGI   81 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            3578999987 9999999998888899 8999998887665433 333211 1  23222  123333333321  1379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++.+.+.
T Consensus        82 d~li~~ag~   90 (257)
T PRK07067         82 DILFNNAAL   90 (257)
T ss_pred             CEEEECCCc
Confidence            999998763

>PRK05854 short chain dehydrogenase; Provisional

Probab=94.99  E-value=0.15  Score=47.65  Aligned_cols=79  Identities=18%  Similarity=0.175  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHc-----CCc-E--EEcCCCCCCccHHHHHHhhc-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF-----GVT-E--FVNSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~l-----ga~-~--v~~~~~~~~~~~~~~i~~~~-  269 (388)
                      .+.+++|+|+ +++|.++++.+...|+ +|+.+++++++.+.+ ..+     +.. .  ..|-.+  .....+.+.++. 
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d--~~sv~~~~~~~~~   89 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSS--LASVAALGEQLRA   89 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCC--HHHHHHHHHHHHH
Confidence            4678999997 9999999988888899 899998887765432 222     111 1  123333  122222222222 


Q ss_pred             -CCCccEEEEccCC
Q 016507          270 -DGGADYCFECVGL  282 (388)
Q Consensus       270 -~g~~dvvid~~g~  282 (388)
                       .++.|++|++.|.
T Consensus        90 ~~~~iD~li~nAG~  103 (313)
T PRK05854         90 EGRPIHLLINNAGV  103 (313)
T ss_pred             hCCCccEEEECCcc
Confidence             1378999998773

>PRK06114 short chain dehydrogenase; Provisional

Probab=94.98  E-value=0.16  Score=45.76  Aligned_cols=79  Identities=16%  Similarity=0.232  Sum_probs=49.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch-H-HHH---HHHcCCcE-E--EcCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-K-FEI---GKRFGVTE-F--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~-~-~~~---~~~lga~~-v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      .+.++||+|+ |.+|.++++.+...|+ +|++++++++ . .+.   ++..+... .  .|-.+  ...+.+.+.+..  
T Consensus         7 ~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~   83 (254)
T PRK06114          7 DGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTS--KADLRAAVARTEAE   83 (254)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888999 8888887653 2 222   22233221 2  23222  123333333322  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .++.|++|.+.|.
T Consensus        84 ~g~id~li~~ag~   96 (254)
T PRK06114         84 LGALTLAVNAAGI   96 (254)
T ss_pred             cCCCCEEEECCCC
Confidence            1378999999874

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=94.98  E-value=0.15  Score=45.82  Aligned_cols=79  Identities=20%  Similarity=0.285  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-H---cCCcE---EEcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGVTE---FVNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~---lga~~---v~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      ++.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+. .   .+...   ..|-.+  ...+.+.+.+..  .
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   79 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD--EEAINAGIDYAVETF   79 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4578999987 9999999998888899 8999988877654332 2   23221   223332  122333332221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|.+.+.
T Consensus        80 ~~~d~vi~~a~~   91 (258)
T PRK12429         80 GGVDILVNNAGI   91 (258)
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=94.97  E-value=0.065  Score=47.96  Aligned_cols=107  Identities=17%  Similarity=0.255  Sum_probs=65.2

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHH----cCCcE-E-EcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTE-F-VNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~----lga~~-v-~~~~~~~~~~~~~~i  265 (388)
                      +...+++.||++||=-|.|+ |.++..+++..| -.+|+..+..+++.+.+++    +|... + +..++.....+    
T Consensus        32 I~~~l~i~pG~~VlEaGtGS-G~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~----  106 (247)
T PF08704_consen   32 ILMRLDIRPGSRVLEAGTGS-GSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF----  106 (247)
T ss_dssp             HHHHTT--TT-EEEEE--TT-SHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG------
T ss_pred             HHHHcCCCCCCEEEEecCCc-HHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc----
Confidence            55678999999999987655 677777777665 3389999999998877664    45532 2 22222101112    


Q ss_pred             HhhcCCCccEEEEccCCH-HHHHHHHHHh-hcCCceEEEEcc
Q 016507          266 IDMTDGGADYCFECVGLA-SLVQEAYACC-RKGWGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~-~~~~~~~~~l-~~~~G~~v~~g~  305 (388)
                      .+-....+|.||==.+.+ ..+..+.+.| +++ |+++.+.-
T Consensus       107 ~~~~~~~~DavfLDlp~Pw~~i~~~~~~L~~~g-G~i~~fsP  147 (247)
T PF08704_consen  107 DEELESDFDAVFLDLPDPWEAIPHAKRALKKPG-GRICCFSP  147 (247)
T ss_dssp             STT-TTSEEEEEEESSSGGGGHHHHHHHE-EEE-EEEEEEES
T ss_pred             cccccCcccEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECC
Confidence            111112688885544444 4588999999 887 99988853

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=94.97  E-value=0.17  Score=45.46  Aligned_cols=79  Identities=27%  Similarity=0.406  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HH---cCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KR---FGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~---lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+ .+   .+... .  .|-.+  ...+.+.+.+..  .
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   84 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEGIKAHAAPFNVTH--KQEVEAAIEHIEKDI   84 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCC--HHHHHHHHHHHHHhc
Confidence            4678999987 9999999998888899 899999887654432 22   23221 2  23322  122333332221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|+++.+.|.
T Consensus        85 ~~id~vi~~ag~   96 (254)
T PRK08085         85 GPIDVLINNAGI   96 (254)
T ss_pred             CCCCEEEECCCc
Confidence            379999999874

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=94.97  E-value=0.15  Score=46.57  Aligned_cols=78  Identities=26%  Similarity=0.274  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-H---HcCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K---RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~---~lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ .   ..+... .  .|-.+  ...+.+.+.+...  
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   85 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLD--KESLEQARQQILEDF   85 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999998888999 899998877554332 2   223221 1  22222  1223333332221  


Q ss_pred             CCccEEEEccC
Q 016507          271 GGADYCFECVG  281 (388)
Q Consensus       271 g~~dvvid~~g  281 (388)
                      +++|++|.+.|
T Consensus        86 g~id~li~~ag   96 (278)
T PRK08277         86 GPCDILINGAG   96 (278)
T ss_pred             CCCCEEEECCC
Confidence            37999999987

>PRK08589 short chain dehydrogenase; Validated

Probab=94.96  E-value=0.14  Score=46.72  Aligned_cols=79  Identities=24%  Similarity=0.312  Sum_probs=49.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc---CCc---EEEcCCCCCCccHHHHHHhhc--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF---GVT---EFVNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l---ga~---~v~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      .+.++||+|+ +.+|.+.++.+...|+ +|++++++++..+.+.++   +..   ...|-.+  .....+.+.+..  .+
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIAEAVSETVDKIKSNGGKAKAYHVDISD--EQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHHHcC
Confidence            4678999987 9999999988888899 899998874333333332   321   1233333  122333333322  13


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      +.|++|++.|.
T Consensus        82 ~id~li~~Ag~   92 (272)
T PRK08589         82 RVDVLFNNAGV   92 (272)
T ss_pred             CcCEEEECCCC
Confidence            78999998864

>PRK06197 short chain dehydrogenase; Provisional

Probab=94.96  E-value=0.15  Score=47.35  Aligned_cols=79  Identities=18%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHc-----CCc-EE--EcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF-----GVT-EF--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~l-----ga~-~v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++.++.++.+.+ +.+     +.. ..  .|-.+  .+.+.+.+.++..
T Consensus        15 ~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~   91 (306)
T PRK06197         15 SGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS--LASVRAAADALRA   91 (306)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHh
Confidence            5678999987 9999999988888899 898888877654322 111     111 11  23332  1223333333221


Q ss_pred             --CCccEEEEccCC
Q 016507          271 --GGADYCFECVGL  282 (388)
Q Consensus       271 --g~~dvvid~~g~  282 (388)
                        +++|++|.+.|.
T Consensus        92 ~~~~iD~li~nAg~  105 (306)
T PRK06197         92 AYPRIDLLINNAGV  105 (306)
T ss_pred             hCCCCCEEEECCcc
Confidence              379999998873

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.95  E-value=0.15  Score=45.96  Aligned_cols=79  Identities=16%  Similarity=0.237  Sum_probs=49.0

Q ss_pred             CCCEEEEEccc---hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc--EE--EcCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EF--VNSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Gag---~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~--~v--~~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      .+.++||+|++   ++|.+.++.+...|+ +|+.+.++++..+.++++...  +.  .|-.+  .++..+.+.+...  +
T Consensus         6 ~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g   82 (252)
T PRK06079          6 SGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS--DESIERAFATIKERVG   82 (252)
T ss_pred             CCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhccCceeEEeCCCCC--HHHHHHHHHHHHHHhC
Confidence            57889999874   899999888888899 899888775434444443211  11  23222  1223333332221  4


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      .+|+++++.|.
T Consensus        83 ~iD~lv~nAg~   93 (252)
T PRK06079         83 KIDGIVHAIAY   93 (252)
T ss_pred             CCCEEEEcccc
Confidence            79999998873

>PRK07832 short chain dehydrogenase; Provisional

Probab=94.94  E-value=0.14  Score=46.63  Aligned_cols=76  Identities=20%  Similarity=0.270  Sum_probs=48.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE----EEcCCCCCCccHHHHHHhhc--CCC
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE----FVNSKNCGDKSVSQIIIDMT--DGG  272 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~----v~~~~~~~~~~~~~~i~~~~--~g~  272 (388)
                      ++||+|+ |++|..+++.+...|+ +|+++++++++.+.+    +..+...    ..|-.+  .+.+.+.+.+..  .++
T Consensus         2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   78 (272)
T PRK07832          2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISD--YDAVAAFAADIHAAHGS   78 (272)
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC--HHHHHHHHHHHHHhcCC
Confidence            6899987 9999999998888899 899988877654432    2233321    234333  122222222221  137


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|++|++.|.
T Consensus        79 id~lv~~ag~   88 (272)
T PRK07832         79 MDVVMNIAGI   88 (272)
T ss_pred             CCEEEECCCC
Confidence            9999999974

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.94  E-value=0.28  Score=47.17  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .+.+|+|+|+|++|..++..+...|..+++.++.+
T Consensus       134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d  168 (376)
T PRK08762        134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD  168 (376)
T ss_pred             hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            56789999999999999999999999999999887

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=94.94  E-value=0.6  Score=36.48  Aligned_cols=86  Identities=20%  Similarity=0.272  Sum_probs=59.5

Q ss_pred             EEEEEccchhHHHHHHHHHHc--CCcEEE-EEcCCchHHHH-HHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          204 TVVIFGLGSIGLAVAEGARLC--GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~--g~~~Vi-~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +|.|+|.|.+|......++..  +. +++ +.++++++.+. .+++|.. .+       .++.+.+...   .+|+|+-+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~~~-~~-------~~~~~ll~~~---~~D~V~I~   69 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYGIP-VY-------TDLEELLADE---DVDAVIIA   69 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTTSE-EE-------SSHHHHHHHT---TESEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhccc-ch-------hHHHHHHHhh---cCCEEEEe
Confidence            588999999998887666544  45 555 55666666654 5567877 43       2344444332   79999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEEEE
Q 016507          280 VGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      +......+.+..++..  |.-+.+
T Consensus        70 tp~~~h~~~~~~~l~~--g~~v~~   91 (120)
T PF01408_consen   70 TPPSSHAEIAKKALEA--GKHVLV   91 (120)
T ss_dssp             SSGGGHHHHHHHHHHT--TSEEEE
T ss_pred             cCCcchHHHHHHHHHc--CCEEEE
Confidence            9998878888888887  455555

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06125 short chain dehydrogenase; Provisional

Probab=94.93  E-value=0.15  Score=46.04  Aligned_cols=77  Identities=23%  Similarity=0.293  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c----CCc-EE--EcCCCCCCccHHHHHHhhcCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVT-EF--VNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l----ga~-~v--~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      .+.++||+|+ |++|...++.+...|+ +|+++++++++.+.+.+ +    +.. .+  .|-.+  ...+.+.+.+.  +
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~--g   80 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSS--PEAREQLAAEA--G   80 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC--HHHHHHHHHHh--C
Confidence            4689999987 9999999998888899 99999888776544321 2    322 12  23222  12233333222  4


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus        81 ~id~lv~~ag~   91 (259)
T PRK06125         81 DIDILVNNAGA   91 (259)
T ss_pred             CCCEEEECCCC
Confidence            79999998874

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=94.93  E-value=0.23  Score=45.34  Aligned_cols=92  Identities=15%  Similarity=0.103  Sum_probs=57.6

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcC---CcEEEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG---VTEFVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lg---a~~v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      ...+.+++|+|+|++|.+++..+...|+ +|+++.+++++.+.+ +.+.   ....+.        +.+    .....+|
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~~~~~~la~~~~~~~~~~~~~--------~~~----~~~~~~D  180 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTVSKAEELAERFQRYGEIQAFS--------MDE----LPLHRVD  180 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhcCceEEec--------hhh----hcccCcc
Confidence            3457899999999999999888888898 899998887765433 3332   111211        111    1112689


Q ss_pred             EEEEccCCHHH--H---HHHHHHhhcCCceEEEEc
Q 016507          275 YCFECVGLASL--V---QEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       275 vvid~~g~~~~--~---~~~~~~l~~~~G~~v~~g  304 (388)
                      +||+|++....  .   ......++++ ..++.+.
T Consensus       181 ivInatp~gm~~~~~~~~~~~~~l~~~-~~v~D~~  214 (270)
T TIGR00507       181 LIINATSAGMSGNIDEPPVPAEKLKEG-MVVYDMV  214 (270)
T ss_pred             EEEECCCCCCCCCCCCCCCCHHHcCCC-CEEEEec
Confidence            99999986420  1   1123456664 5666664

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.92  E-value=0.19  Score=47.40  Aligned_cols=36  Identities=31%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ...+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            346799999999999999999999998999998763

>PRK07024 short chain dehydrogenase; Provisional

Probab=94.90  E-value=0.17  Score=45.60  Aligned_cols=78  Identities=19%  Similarity=0.201  Sum_probs=49.8

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cC----CcE-EEcCCCCCCccHHHHHHhhcC--CC
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG----VTE-FVNSKNCGDKSVSQIIIDMTD--GG  272 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lg----a~~-v~~~~~~~~~~~~~~i~~~~~--g~  272 (388)
                      +.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ +.    +.. ..|-.+  .+.+.+.+.+...  +.
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~g~   78 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAARVSVYAADVRD--ADALAAAAADFIAAHGL   78 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCC--HHHHHHHHHHHHHhCCC
Confidence            358999987 9999999988888899 89999988776654332 22    111 123332  1233333333222  36


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+++.+.|.
T Consensus        79 id~lv~~ag~   88 (257)
T PRK07024         79 PDVVIANAGI   88 (257)
T ss_pred             CCEEEECCCc
Confidence            8999998873

>PRK09186 flagellin modification protein A; Provisional

Probab=94.90  E-value=0.15  Score=45.79  Aligned_cols=78  Identities=21%  Similarity=0.320  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHc----CCc---E-EEcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF----GVT---E-FVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~l----ga~---~-v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.+|||+|+ |.+|...+..+...|+ +|+++.+++++.+.+ .++    +..   . ..|-.+  ...+.+.+.+...
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~   79 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITD--QESLEEFLSKSAE   79 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 899998887665433 222    221   1 223333  1233333333221


Q ss_pred             --CCccEEEEccC
Q 016507          271 --GGADYCFECVG  281 (388)
Q Consensus       271 --g~~dvvid~~g  281 (388)
                        +++|++|++.+
T Consensus        80 ~~~~id~vi~~A~   92 (256)
T PRK09186         80 KYGKIDGAVNCAY   92 (256)
T ss_pred             HcCCccEEEECCc
Confidence              36899999885

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.89  E-value=0.21  Score=43.82  Aligned_cols=35  Identities=26%  Similarity=0.253  Sum_probs=31.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      ...+|+|+|+|++|..+++.+...|..+++.+|.+
T Consensus        27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            34679999999999999999999999889999877

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.87  E-value=0.28  Score=44.02  Aligned_cols=36  Identities=25%  Similarity=0.386  Sum_probs=31.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ...+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   66 (245)
T PRK05690         31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT   66 (245)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence            347899999999999999999999998999887654

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=94.86  E-value=0.13  Score=42.78  Aligned_cols=79  Identities=25%  Similarity=0.291  Sum_probs=47.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC--chHHH-HHH---HcCCcE-EEcCCCCCCccHHHHHHhhc--CCCc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI--SEKFE-IGK---RFGVTE-FVNSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~--~~~~~-~~~---~lga~~-v~~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      ++||+|+ +++|...++.+-..|..+|+.+.++  .++.+ ++.   ..+... ++..+-.+.+.+...+.+..  .+..
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~l   81 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGPL   81 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSSE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6899987 9999998887777777688888887  33333 322   234322 22211111233333333332  2379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|.+.|.
T Consensus        82 d~li~~ag~   90 (167)
T PF00106_consen   82 DILINNAGI   90 (167)
T ss_dssp             SEEEEECSC
T ss_pred             ccccccccc
Confidence            999998885

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=94.85  E-value=0.16  Score=45.39  Aligned_cols=79  Identities=19%  Similarity=0.257  Sum_probs=49.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH----HHHcCCcE-EE--cCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI----GKRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~----~~~lga~~-v~--~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.+|||+|+ |.+|...+..+...|+ +|++++++.++.+.    ++..+... ++  |-.+  ...+.+.+.+...  
T Consensus         5 ~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   81 (251)
T PRK12826          5 EGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAGGKARARQVDVRD--RAALKAAVAAGVEDF   81 (251)
T ss_pred             CCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4678999997 9999999988888899 89999888654432    22223221 22  2222  1223333322221  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|.+.+.
T Consensus        82 ~~~d~vi~~ag~   93 (251)
T PRK12826         82 GRLDILVANAGI   93 (251)
T ss_pred             CCCCEEEECCCC
Confidence            378999998864

>PRK08226 short chain dehydrogenase; Provisional

Probab=94.84  E-value=0.17  Score=45.69  Aligned_cols=79  Identities=24%  Similarity=0.299  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH---cCCcE-E--EcCCCCCCccHHHHHHhhc--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR---FGVTE-F--VNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~---lga~~-v--~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+.++++++..+.+..   .+... .  .|-.+  ..++.+.+.+..  .+
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~~   81 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGA-NLILLDISPEIEKLADELCGRGHRCTAVVADVRD--PASVAAAIKRAKEKEG   81 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            4678999987 9999999998888899 89999887654333332   23221 1  22222  122222222221  13


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      +.|++|.+.|.
T Consensus        82 ~id~vi~~ag~   92 (263)
T PRK08226         82 RIDILVNNAGV   92 (263)
T ss_pred             CCCEEEECCCc
Confidence            78999998883

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=94.84  E-value=0.9  Score=41.33  Aligned_cols=83  Identities=17%  Similarity=0.239  Sum_probs=55.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHc----CC------cEEEEEcCCc-----------hHHHHHHHcCCcEEEcCCCCCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLC----GA------TRIIGVDVIS-----------EKFEIGKRFGVTEFVNSKNCGDK  259 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~----g~------~~Vi~~~~~~-----------~~~~~~~~lga~~v~~~~~~~~~  259 (388)
                      .+.+|+|+|+|+.|...+.+....    |+      ++++.+|+..           .+..+++....     ...   .
T Consensus        24 ~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~-----~~~---~   95 (279)
T cd05312          24 SDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEE-----KEG---K   95 (279)
T ss_pred             hhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCc-----ccC---C
Confidence            567999999999988888777654    87      5888887652           23344433211     111   4


Q ss_pred             cHHHHHHhhcCCCccEEEEccCCH-HHHHHHHHHhh
Q 016507          260 SVSQIIIDMTDGGADYCFECVGLA-SLVQEAYACCR  294 (388)
Q Consensus       260 ~~~~~i~~~~~g~~dvvid~~g~~-~~~~~~~~~l~  294 (388)
                      ++.+.++..   ++|+.|-+++.. .--++.++.|.
T Consensus        96 ~L~e~i~~v---~ptvlIG~S~~~g~ft~evv~~Ma  128 (279)
T cd05312          96 SLLEVVKAV---KPTVLIGLSGVGGAFTEEVVRAMA  128 (279)
T ss_pred             CHHHHHHhc---CCCEEEEeCCCCCCCCHHHHHHHH
Confidence            677777766   899999988633 22457777776

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=94.84  E-value=0.26  Score=43.68  Aligned_cols=75  Identities=19%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH--cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR--FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~--lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +++|+|+|.+|...++.+...|. .|++++.++++.+...+  +... ++.-+.    .-.+.+++.--..+|+++-+++
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~~~~~~-~v~gd~----t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLADELDTH-VVIGDA----TDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhhhcceE-EEEecC----CCHHHHHhcCCCcCCEEEEeeC
Confidence            58899999999999999999999 99999999998776333  4443 333222    2234455542238999999999


Q ss_pred             CHH
Q 016507          282 LAS  284 (388)
Q Consensus       282 ~~~  284 (388)
                      .+.
T Consensus        76 ~d~   78 (225)
T COG0569          76 NDE   78 (225)
T ss_pred             CCH
Confidence            865

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=94.84  E-value=0.37  Score=38.27  Aligned_cols=91  Identities=22%  Similarity=0.305  Sum_probs=49.7

Q ss_pred             EEEEEcc-chhHHHHHHHHHH-cCCcEEEEEcCCch---HHHHHHHcCCc--EEEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          204 TVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISE---KFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~-~g~~~Vi~~~~~~~---~~~~~~~lga~--~v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      +|+|+|+ |-+|..+++.+.. .+.+-+-++++.++   ..+.-.-.|..  .+.-+     .++.+    ... .+|++
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~-----~~l~~----~~~-~~DVv   71 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVT-----DDLEE----LLE-EADVV   71 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEB-----S-HHH----HTT-H-SEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccc-----hhHHH----hcc-cCCEE
Confidence            6899998 9999999999987 67734555555441   11111111111  00000     12222    222 38999


Q ss_pred             EEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          277 FECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       277 id~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ||++. +......++.+... |.-+.+|.+
T Consensus        72 IDfT~-p~~~~~~~~~~~~~-g~~~ViGTT   99 (124)
T PF01113_consen   72 IDFTN-PDAVYDNLEYALKH-GVPLVIGTT   99 (124)
T ss_dssp             EEES--HHHHHHHHHHHHHH-T-EEEEE-S
T ss_pred             EEcCC-hHHhHHHHHHHHhC-CCCEEEECC
Confidence            99994 44466666666664 787788764

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK08862 short chain dehydrogenase; Provisional

Probab=94.83  E-value=0.18  Score=44.71  Aligned_cols=78  Identities=12%  Similarity=0.077  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ +++|.+.+..+...|+ +|+.+.+++++.+.+.    ..+.+. .  .|-.+  .+...+.+.+...  
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFS--QESIRHLFDAIEQQF   80 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            4678999987 8999998888888899 8999988887654332    234322 2  23222  1333323332221  


Q ss_pred             C-CccEEEEccC
Q 016507          271 G-GADYCFECVG  281 (388)
Q Consensus       271 g-~~dvvid~~g  281 (388)
                      + .+|++|.+.|
T Consensus        81 g~~iD~li~nag   92 (227)
T PRK08862         81 NRAPDVLVNNWT   92 (227)
T ss_pred             CCCCCEEEECCc
Confidence            3 7999999986

>PRK06141 ornithine cyclodeaminase; Validated

Probab=94.82  E-value=0.31  Score=45.56  Aligned_cols=94  Identities=12%  Similarity=0.014  Sum_probs=60.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HcCCcEEEEEcCCchHHHHH-HHc---CCcEEEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG-KRF---GVTEFVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~-~~g~~~Vi~~~~~~~~~~~~-~~l---ga~~v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      ....+|+|+|+|..|...+..+. ..+..+|.+..+++++.+.+ ..+   |.. +...     .+..+.+     .+.|
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~-~~~~-----~~~~~av-----~~aD  191 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFD-AEVV-----TDLEAAV-----RQAD  191 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCc-eEEe-----CCHHHHH-----hcCC
Confidence            45678999999999999876444 46767999999998876544 333   322 1111     1223333     2789


Q ss_pred             EEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          275 YCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       275 vvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +|+.|+++...+- --+.++++ -.+..+|..
T Consensus       192 IVi~aT~s~~pvl-~~~~l~~g-~~i~~ig~~  221 (314)
T PRK06141        192 IISCATLSTEPLV-RGEWLKPG-THLDLVGNF  221 (314)
T ss_pred             EEEEeeCCCCCEe-cHHHcCCC-CEEEeeCCC
Confidence            9999888764211 12567886 666667653

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=94.82  E-value=0.17  Score=47.48  Aligned_cols=78  Identities=21%  Similarity=0.198  Sum_probs=49.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcC---Cc-EE--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG---VT-EF--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lg---a~-~v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+ ..+.   .. .+  .|-.+  ...+.+.+.+..  .
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   81 (322)
T PRK07453          5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGD--LDSVRRFVDDFRALG   81 (322)
T ss_pred             CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccCCceEEEEecCCC--HHHHHHHHHHHHHhC
Confidence            4678999987 9999999988888898 899998887765433 2332   11 11  23332  122222232221  2


Q ss_pred             CCccEEEEccC
Q 016507          271 GGADYCFECVG  281 (388)
Q Consensus       271 g~~dvvid~~g  281 (388)
                      +++|++|++.|
T Consensus        82 ~~iD~li~nAg   92 (322)
T PRK07453         82 KPLDALVCNAA   92 (322)
T ss_pred             CCccEEEECCc
Confidence            26999999887

>PRK12937 short chain dehydrogenase; Provisional

Probab=94.82  E-value=0.61  Score=41.41  Aligned_cols=79  Identities=16%  Similarity=0.111  Sum_probs=46.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch-HHH----HHHHcCCc-EEE--cCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFE----IGKRFGVT-EFV--NSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~-~~~----~~~~lga~-~v~--~~~~~~~~~~~~~i~~~~--  269 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|+.+.++.+ ..+    .+...+.. ..+  |-.+  ...+.+.+.+..  
T Consensus         4 ~~~~vlItG~~~~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   80 (245)
T PRK12937          4 SNKVAIVTGASRGIGAAIARRLAADGF-AVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVAD--AAAVTRLFDAAETA   80 (245)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999999988999 7777655432 221    22223322 122  2222  122333333221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .++.|++|.+.|.
T Consensus        81 ~~~id~vi~~ag~   93 (245)
T PRK12937         81 FGRIDVLVNNAGV   93 (245)
T ss_pred             cCCCCEEEECCCC
Confidence            1379999998874

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=94.80  E-value=0.6  Score=41.53  Aligned_cols=107  Identities=21%  Similarity=0.322  Sum_probs=72.8

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHhh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      +.......+|++||=+|+|. |-.|+.+++..|-.+|+++|.+++-++.+++    .|... +..-.    .-++.+. +
T Consensus        43 ~i~~~~~~~g~~vLDva~GT-Gd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~----~dAe~LP-f  115 (238)
T COG2226          43 LISLLGIKPGDKVLDVACGT-GDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVV----GDAENLP-F  115 (238)
T ss_pred             HHHhhCCCCCCEEEEecCCc-cHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEE----echhhCC-C
Confidence            44555667899999986654 8899999998875599999999988877764    22221 11000    1122222 2


Q ss_pred             cCCCccEEEEccCC------HHHHHHHHHHhhcCCceEEEEccCC
Q 016507          269 TDGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       269 ~~g~~dvvid~~g~------~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      -..-||+|.-+.|-      +..+.++.+.++|+ |+++.+....
T Consensus       116 ~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpg-G~~~vle~~~  159 (238)
T COG2226         116 PDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPG-GRLLVLEFSK  159 (238)
T ss_pred             CCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCC-eEEEEEEcCC
Confidence            22279999776663      24588999999998 9999887643

>PLN02253 xanthoxin dehydrogenase

Probab=94.80  E-value=0.15  Score=46.58  Aligned_cols=79  Identities=20%  Similarity=0.230  Sum_probs=49.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCC--c-E--EEcCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGV--T-E--FVNSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga--~-~--v~~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++++..+. ...++.  . .  ..|-.+  .+.+.+.+.....  +
T Consensus        17 ~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~~~~~~g   93 (280)
T PLN02253         17 LGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTV--EDDVSRAVDFTVDKFG   93 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            3678999987 9999998888888899 89999887655433 233321  1 1  123333  1223333332221  3


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus        94 ~id~li~~Ag~  104 (280)
T PLN02253         94 TLDIMVNNAGL  104 (280)
T ss_pred             CCCEEEECCCc
Confidence            79999998874

>PRK08251 short chain dehydrogenase; Provisional

Probab=94.80  E-value=0.19  Score=44.85  Aligned_cols=77  Identities=18%  Similarity=0.333  Sum_probs=49.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c-----CCc-EE--EcCCCCCCccHHHHHHhhcC-
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F-----GVT-EF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l-----ga~-~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      +.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.. +     +.. ++  .|..+  .+.+.+.+.+... 
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   78 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVND--HDQVFEVFAEFRDE   78 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            468999987 9999998887777898 89998888776544322 1     211 12  23333  1233333333322 


Q ss_pred             -CCccEEEEccC
Q 016507          271 -GGADYCFECVG  281 (388)
Q Consensus       271 -g~~dvvid~~g  281 (388)
                       ++.|++|.+.|
T Consensus        79 ~~~id~vi~~ag   90 (248)
T PRK08251         79 LGGLDRVIVNAG   90 (248)
T ss_pred             cCCCCEEEECCC
Confidence             37999999886

>PRK09242 tropinone reductase; Provisional

Probab=94.79  E-value=0.19  Score=45.28  Aligned_cols=79  Identities=20%  Similarity=0.170  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc-----CCcE-E--EcCCCCCCccHHHHHHhhc-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVTE-F--VNSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l-----ga~~-v--~~~~~~~~~~~~~~i~~~~-  269 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. ++     +... .  .|-.+  ...+.+.+.+.. 
T Consensus         8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   84 (257)
T PRK09242          8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSD--DEDRRAILDWVED   84 (257)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999999988999 8999988876654332 22     2211 1  23322  122323232221 


Q ss_pred             -CCCccEEEEccCC
Q 016507          270 -DGGADYCFECVGL  282 (388)
Q Consensus       270 -~g~~dvvid~~g~  282 (388)
                       -+++|+++.+.|.
T Consensus        85 ~~g~id~li~~ag~   98 (257)
T PRK09242         85 HWDGLHILVNNAGG   98 (257)
T ss_pred             HcCCCCEEEECCCC
Confidence             1379999999985

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.79  E-value=0.2  Score=45.54  Aligned_cols=78  Identities=15%  Similarity=0.214  Sum_probs=47.3

Q ss_pred             CCCEEEEEccc---hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEE--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGLG---SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Gag---~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|++   ++|.++++.+-..|+ +|+.+++++...+.+++    .+....  .|-.+  .+++.+.+.+... 
T Consensus         5 ~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   81 (262)
T PRK07984          5 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAE--DASIDAMFAELGKV   81 (262)
T ss_pred             CCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCC--HHHHHHHHHHHHhh
Confidence            56789999873   799998888888899 88888776422222322    222122  23332  2333333333222 


Q ss_pred             -CCccEEEEccC
Q 016507          271 -GGADYCFECVG  281 (388)
Q Consensus       271 -g~~dvvid~~g  281 (388)
                       |++|++|++.|
T Consensus        82 ~g~iD~linnAg   93 (262)
T PRK07984         82 WPKFDGFVHSIG   93 (262)
T ss_pred             cCCCCEEEECCc
Confidence             37999999987

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.79  E-value=0.34  Score=44.65  Aligned_cols=92  Identities=20%  Similarity=0.216  Sum_probs=57.7

Q ss_pred             CEEEEEccchhHHH-HHHHHHHcCCcEEEEE-cCCch--HHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          203 STVVIFGLGSIGLA-VAEGARLCGATRIIGV-DVISE--KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       203 ~~VlI~Gag~vG~~-ai~la~~~g~~~Vi~~-~~~~~--~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      -+|.|+|.|.+|.. +..+.+.-+. ++.++ +.+++  .+++++++|....+       .++.+.+......++|+||+
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~~~v-elvAVvdid~es~gla~A~~~Gi~~~~-------~~ie~LL~~~~~~dIDiVf~   76 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRSEHL-EPGAMVGIDPESDGLARARRLGVATSA-------EGIDGLLAMPEFDDIDIVFD   76 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcCCCc-EEEEEEeCChhhHHHHHHHHcCCCccc-------CCHHHHHhCcCCCCCCEEEE
Confidence            47999999999986 4455555566 55544 44443  34667778865332       22333332211127999999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      +++.....+.+.+++..| -++++.
T Consensus        77 AT~a~~H~e~a~~a~eaG-k~VID~  100 (302)
T PRK08300         77 ATSAGAHVRHAAKLREAG-IRAIDL  100 (302)
T ss_pred             CCCHHHHHHHHHHHHHcC-CeEEEC
Confidence            999987777777777764 555544

>PRK07856 short chain dehydrogenase; Provisional

Probab=94.79  E-value=0.13  Score=46.11  Aligned_cols=77  Identities=16%  Similarity=0.178  Sum_probs=48.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhc--CCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMT--DGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~--~g~~dvv  276 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.  .....+.. ..|..+  .+.+.+.+.+..  .+++|++
T Consensus         5 ~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~~~~--~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~v   79 (252)
T PRK07856          5 TGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRAPET--VDGRPAEFHAADVRD--PDQVAALVDAIVERHGRLDVL   79 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCChhhh--hcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4789999987 9999999998888899 899998876541  11111211 223332  122333333222  1378999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |.+.|.
T Consensus        80 i~~ag~   85 (252)
T PRK07856         80 VNNAGG   85 (252)
T ss_pred             EECCCC
Confidence            998873

>PRK06398 aldose dehydrogenase; Validated

Probab=94.72  E-value=0.11  Score=47.02  Aligned_cols=74  Identities=22%  Similarity=0.284  Sum_probs=48.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhcC--CCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~~--g~~dvv  276 (388)
                      .+.++||+|+ |.+|.+.+..+...|+ +|+.+++++.+..     .... ..|-.+  ...+.+.+.+...  +++|++
T Consensus         5 ~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~~~~~~-----~~~~~~~D~~~--~~~i~~~~~~~~~~~~~id~l   76 (258)
T PRK06398          5 KDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIKEPSYN-----DVDYFKVDVSN--KEQVIKGIDYVISKYGRIDIL   76 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCccccC-----ceEEEEccCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4679999987 9999999999988999 8999887765422     1111 223333  1233333333221  379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.|.
T Consensus        77 i~~Ag~   82 (258)
T PRK06398         77 VNNAGI   82 (258)
T ss_pred             EECCCC
Confidence            998874

>PRK07985 oxidoreductase; Provisional

Probab=94.71  E-value=0.49  Score=43.68  Aligned_cols=102  Identities=21%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc--hHHHHH----HHcCCcE---EEcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKFEIG----KRFGVTE---FVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~--~~~~~~----~~lga~~---v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++.++.  ++.+.+    +..+...   ..|-.+  .+.+.+.+.+...
T Consensus        48 ~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~  124 (294)
T PRK07985         48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSD--EKFARSLVHEAHK  124 (294)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            5678999987 9999999998888899 888876543  222222    2233221   223332  1233333333222


Q ss_pred             --CCccEEEEccCCH--------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          271 --GGADYCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       271 --g~~dvvid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                        +++|+++.+.|..                          ..++.++..+..+ |+++.++..
T Consensus       125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~iv~iSS~  187 (294)
T PRK07985        125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKG-ASIITTSSI  187 (294)
T ss_pred             HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcC-CEEEEECCc
Confidence              3789999987631                          1123444455566 899988764

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=94.71  E-value=0.17  Score=45.27  Aligned_cols=76  Identities=16%  Similarity=0.295  Sum_probs=49.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcE-E--EcCCCCCCccHHHHHHhhcC--CCccEE
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGADYC  276 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~~dvv  276 (388)
                      +|+|+|+ |.+|.+.+..+...|+ +|+++++++++.+.+.. ++... .  .|-.+  .+.+.+.+.+...  ++.|++
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~~~id~v   78 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWRNIDVL   78 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhccceEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            6899987 9999999998888899 89999998877665443 34321 1  23222  1223333332222  379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      +.+.|.
T Consensus        79 i~~ag~   84 (248)
T PRK10538         79 VNNAGL   84 (248)
T ss_pred             EECCCc
Confidence            998874

>PRK13243 glyoxylate reductase; Reviewed

Probab=94.69  E-value=0.3  Score=46.01  Aligned_cols=37  Identities=38%  Similarity=0.496  Sum_probs=33.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchH
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~  238 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++...
T Consensus       149 ~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~  185 (333)
T PRK13243        149 YGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRTRKP  185 (333)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCCh
Confidence            57899999999999999999999999 89999886543

>PRK08317 hypothetical protein; Provisional

Probab=94.66  E-value=0.41  Score=42.32  Aligned_cols=102  Identities=27%  Similarity=0.389  Sum_probs=68.0

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHc----CCc-EEEcCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GVT-EFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~l----ga~-~v~~~~~~~~~~~~~~i~  266 (388)
                      +.+...+.++++||-+|.|. |..+..+++..+ ..++++++.++...+.+++.    +.. .+...+.   ..+     
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~-G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~---~~~-----   81 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGP-GNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDA---DGL-----   81 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCC-CHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEeccc---ccC-----
Confidence            44667788999999999876 888888888763 23899999999888877664    111 1111111   111     


Q ss_pred             hhcCCCccEEEEcc-----CC-HHHHHHHHHHhhcCCceEEEEc
Q 016507          267 DMTDGGADYCFECV-----GL-ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       267 ~~~~g~~dvvid~~-----g~-~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      .+..+.||+|+...     .. ...+..+.+.|+++ |.++...
T Consensus        82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  124 (241)
T PRK08317         82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPG-GRVVVLD  124 (241)
T ss_pred             CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCC-cEEEEEe
Confidence            12223799887532     22 23478999999997 9988765

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=94.66  E-value=0.17  Score=44.30  Aligned_cols=111  Identities=17%  Similarity=0.117  Sum_probs=67.6

Q ss_pred             ccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE--EEcC
Q 016507          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNS  253 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~  253 (388)
                      ..+..+...++  +...++++++++||-+|.|. |..+..+++.. . +|++++.+++..+.+++    ++.+.  +...
T Consensus        59 ~~~~~p~~~~~--l~~~l~~~~~~~VLeiG~Gs-G~~t~~la~~~-~-~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~  133 (212)
T PRK00312         59 QTISQPYMVAR--MTELLELKPGDRVLEIGTGS-GYQAAVLAHLV-R-RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHG  133 (212)
T ss_pred             CeeCcHHHHHH--HHHhcCCCCCCEEEEECCCc-cHHHHHHHHHh-C-EEEEEeCCHHHHHHHHHHHHHCCCCceEEEEC
Confidence            33443444443  44567888999999998754 55555566654 3 89999998877665543    34432  2211


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEc
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +      ..+.+.  ..+.||+|+-............+.|+++ |.++..-
T Consensus       134 d------~~~~~~--~~~~fD~I~~~~~~~~~~~~l~~~L~~g-G~lv~~~  175 (212)
T PRK00312        134 D------GWKGWP--AYAPFDRILVTAAAPEIPRALLEQLKEG-GILVAPV  175 (212)
T ss_pred             C------cccCCC--cCCCcCEEEEccCchhhhHHHHHhcCCC-cEEEEEE
Confidence            1      111110  1137999876555555467888999997 9987653

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=94.65  E-value=0.26  Score=43.38  Aligned_cols=97  Identities=21%  Similarity=0.290  Sum_probs=63.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE--EEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~--v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      -+|-+||=+|.|+ |+++.-+|+. |+ +|+++|-+++-.+.++......  -+|+..    ...+.+... ++.||+|+
T Consensus        58 l~g~~vLDvGCGg-G~Lse~mAr~-Ga-~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~----~~~edl~~~-~~~FDvV~  129 (243)
T COG2227          58 LPGLRVLDVGCGG-GILSEPLARL-GA-SVTGIDASEKPIEVAKLHALESGVNIDYRQ----ATVEDLASA-GGQFDVVT  129 (243)
T ss_pred             CCCCeEEEecCCc-cHhhHHHHHC-CC-eeEEecCChHHHHHHHHhhhhccccccchh----hhHHHHHhc-CCCccEEE
Confidence            4778899998744 5666666654 68 9999999999988887532211  245554    233333322 14899997


Q ss_pred             Ec-----cCCH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          278 EC-----VGLA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       278 d~-----~g~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ..     +..+ ..+..+.++++|+ |.+...-.
T Consensus       130 cmEVlEHv~dp~~~~~~c~~lvkP~-G~lf~STi  162 (243)
T COG2227         130 CMEVLEHVPDPESFLRACAKLVKPG-GILFLSTI  162 (243)
T ss_pred             EhhHHHccCCHHHHHHHHHHHcCCC-cEEEEecc
Confidence            63     3333 2367889999997 88766543

>PRK06720 hypothetical protein; Provisional

Probab=94.65  E-value=0.27  Score=41.41  Aligned_cols=38  Identities=26%  Similarity=0.214  Sum_probs=31.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      .+.+++|+|+ +++|...+..+...|+ +|++++++++..
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~   53 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESG   53 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHH
Confidence            4678999987 8899999888888898 899998876654

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=94.64  E-value=0.23  Score=44.68  Aligned_cols=79  Identities=19%  Similarity=0.333  Sum_probs=48.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH--HHHHHHcCCcE-E--EcCCCCCCccHHHHHHhhcC--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~--~~~~~~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~  272 (388)
                      .+.++||+|+ |.+|.++++.+...|+ +|+.+++.+..  .+.+++++... .  .|-.+  .+++.+.+.+...  ++
T Consensus         9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~   85 (253)
T PRK08993          9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEPTETIEQVTALGRRFLSLTADLRK--IDGIPALLERAVAEFGH   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcchHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHhCC
Confidence            4678999987 9999999998888899 88887654421  22333344221 1  22222  1233333333221  37


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|++|++.|.
T Consensus        86 ~D~li~~Ag~   95 (253)
T PRK08993         86 IDILVNNAGL   95 (253)
T ss_pred             CCEEEECCCC
Confidence            9999999874

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=94.63  E-value=0.22  Score=45.70  Aligned_cols=68  Identities=19%  Similarity=0.280  Sum_probs=49.3

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|.|+|.|.+|...+..++..|. +|+++++++++.+.+.+.|....   ..   .+. +.+     ...|+||-|+...
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g~~~~---~~---~~~-~~~-----~~aDlVilavp~~   68 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERGLVDE---AS---TDL-SLL-----KDCDLVILALPIG   68 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCccc---cc---CCH-hHh-----cCCCEEEEcCCHH
Confidence            58899999999988888887888 89999999888888877764211   11   111 111     2678999888866


Q ss_pred             H
Q 016507          284 S  284 (388)
Q Consensus       284 ~  284 (388)
                      .
T Consensus        69 ~   69 (279)
T PRK07417         69 L   69 (279)
T ss_pred             H
Confidence            4

>PRK07074 short chain dehydrogenase; Provisional

Probab=94.62  E-value=0.22  Score=44.84  Aligned_cols=78  Identities=19%  Similarity=0.307  Sum_probs=49.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcC---CcE-EEcCCCCCCccHHHHHHhhcC--CCc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG---VTE-FVNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lg---a~~-v~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      +.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+. .+.   +.. ..|-.+  .+.+...+.+...  +++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~~   78 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAAALAAFADALGDARFVPVACDLTD--AASLAAALANAAAERGPV   78 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            468999987 9999998888877898 8999998877655433 221   211 223332  1222233332211  368


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++.+.|.
T Consensus        79 d~vi~~ag~   87 (257)
T PRK07074         79 DVLVANAGA   87 (257)
T ss_pred             CEEEECCCC
Confidence            999999874

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.60  E-value=0.4  Score=45.14  Aligned_cols=94  Identities=16%  Similarity=0.061  Sum_probs=63.2

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE------cCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV------NSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~------~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      +|.|+|+|.+|.+.+..+...|. +|.+.++++++.+.+...+.....      ..+-....+..+.+     ...|+||
T Consensus         6 ~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~-----~~aD~Vi   79 (328)
T PRK14618          6 RVAVLGAGAWGTALAVLAASKGV-PVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEAL-----AGADFAV   79 (328)
T ss_pred             eEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHH-----cCCCEEE
Confidence            79999999999999888888898 899999988877766654211000      00000001222222     2689999


Q ss_pred             EccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          278 ECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      -|+.... +...++.++++ -.++.+..
T Consensus        80 ~~v~~~~-~~~v~~~l~~~-~~vi~~~~  105 (328)
T PRK14618         80 VAVPSKA-LRETLAGLPRA-LGYVSCAK  105 (328)
T ss_pred             EECchHH-HHHHHHhcCcC-CEEEEEee
Confidence            9999987 78888888875 66665543

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.59  E-value=0.2  Score=44.91  Aligned_cols=77  Identities=22%  Similarity=0.365  Sum_probs=49.3

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE-E--EcCCCCCCccHHHHHHhhc--CCC
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-F--VNSKNCGDKSVSQIIIDMT--DGG  272 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~-v--~~~~~~~~~~~~~~i~~~~--~g~  272 (388)
                      .++||+|+ |.+|...+..+...|+ +|+++++++++.+.+..    .+... .  .|-.+  .+++.+.+.+..  .++
T Consensus         2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~   78 (255)
T TIGR01963         2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTK--EDEIADMIAAAAAEFGG   78 (255)
T ss_pred             CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhcCC
Confidence            57999997 9999999988888899 89999988776554433    22221 1  23332  123333332222  136


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      .|++|.+.+.
T Consensus        79 ~d~vi~~a~~   88 (255)
T TIGR01963        79 LDILVNNAGI   88 (255)
T ss_pred             CCEEEECCCC
Confidence            8999988864

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK08328 hypothetical protein; Provisional

Probab=94.59  E-value=0.31  Score=43.33  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=31.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .+.+|+|+|+|++|..+++.+...|..+++.+|.+.
T Consensus        26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~   61 (231)
T PRK08328         26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQT   61 (231)
T ss_pred             hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            346899999999999999999999998999987543

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=94.58  E-value=0.42  Score=40.50  Aligned_cols=33  Identities=27%  Similarity=0.226  Sum_probs=29.4

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +|+|+|+|++|...++.+...|..+++.+|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            489999999999999998889998899998765

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=94.58  E-value=0.32  Score=42.11  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=31.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      ...+|+|+|+|++|...++.+-..|.+++..+|.+
T Consensus        20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d   54 (197)
T cd01492          20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR   54 (197)
T ss_pred             HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence            35689999999999999999999999889998765

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PLN02256 arogenate dehydrogenase

Probab=94.51  E-value=0.61  Score=43.35  Aligned_cols=97  Identities=12%  Similarity=0.167  Sum_probs=61.8

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCC
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      +.+...-..+.+|.|+|.|.+|...+..++..|. +|+++++++. .+.++.+|+.. +       .+..+.+    ...
T Consensus        27 ~~~~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~~-~~~a~~~gv~~-~-------~~~~e~~----~~~   92 (304)
T PLN02256         27 LQEELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSDY-SDIAAELGVSF-F-------RDPDDFC----EEH   92 (304)
T ss_pred             HhHhhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECccH-HHHHHHcCCee-e-------CCHHHHh----hCC
Confidence            3455555567789999999999998888888887 8999988764 35566677632 1       1122221    125


Q ss_pred             ccEEEEccCCHHHHHHHHHH-----hhcCCceEEEEcc
Q 016507          273 ADYCFECVGLASLVQEAYAC-----CRKGWGKTIVLGV  305 (388)
Q Consensus       273 ~dvvid~~g~~~~~~~~~~~-----l~~~~G~~v~~g~  305 (388)
                      .|+||-|+.... +...++.     +.++ ..++.++.
T Consensus        93 aDvVilavp~~~-~~~vl~~l~~~~l~~~-~iviDv~S  128 (304)
T PLN02256         93 PDVVLLCTSILS-TEAVLRSLPLQRLKRS-TLFVDVLS  128 (304)
T ss_pred             CCEEEEecCHHH-HHHHHHhhhhhccCCC-CEEEecCC
Confidence            788888887654 3443333     3344 55666654

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=94.51  E-value=0.24  Score=44.01  Aligned_cols=79  Identities=22%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE-E--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      ++.++||+|+ |.+|..+++.+...|+ .|+..+++.++.+.+ ..++... +  .|-.+  .+.+.+.+.+...  +++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~i   81 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRVEKLEALAAELGERVKIFPANLSD--RDEVKALGQKAEADLEGV   81 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999997 9999999988888898 888887776665543 3333221 2  22222  1223322222211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|.+.|.
T Consensus        82 d~vi~~ag~   90 (245)
T PRK12936         82 DILVNNAGI   90 (245)
T ss_pred             CEEEECCCC
Confidence            999999874

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=94.51  E-value=0.34  Score=44.75  Aligned_cols=70  Identities=20%  Similarity=0.175  Sum_probs=49.3

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+...        .+..+.+.     ..|+||.|+...
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~-----~aDivi~~vp~~   66 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLAAGAVTA--------ETARQVTE-----QADVIFTMVPDS   66 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCccc--------CCHHHHHh-----cCCEEEEecCCH
Confidence            47889999999988887777898 89999999998888877665311        11222221     567888887765


Q ss_pred             HHHH
Q 016507          284 SLVQ  287 (388)
Q Consensus       284 ~~~~  287 (388)
                      ..+.
T Consensus        67 ~~~~   70 (291)
T TIGR01505        67 PQVE   70 (291)
T ss_pred             HHHH
Confidence            4333

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=94.48  E-value=0.24  Score=44.67  Aligned_cols=79  Identities=19%  Similarity=0.160  Sum_probs=48.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH---HHHHcCCcE---EEcCCCCCCccHHHHHHhhc--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE---IGKRFGVTE---FVNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~---~~~~lga~~---v~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++.++++..+   .+.+.+...   ..|-.+  .+...+.+.+..  .+
T Consensus        14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~g   90 (258)
T PRK06935         14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTK--PESAEKVVKEALEEFG   90 (258)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHcC
Confidence            5789999987 9999999998888999 8888877632222   222233221   223332  122222233221  13


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|+++.+.|.
T Consensus        91 ~id~li~~ag~  101 (258)
T PRK06935         91 KIDILVNNAGT  101 (258)
T ss_pred             CCCEEEECCCC
Confidence            78999998874

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=94.47  E-value=0.23  Score=44.59  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.+|||+|+ |.+|...+..+...|+ +|+.++++.++.+.+.    ..+.+. +  .|-.+  .....+.+....  .
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~i~~~~~~~~~~~   86 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFALSKL   86 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 9999999998888899 8888887766544332    223221 2  23333  122333333221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|+++.+.|.
T Consensus        87 ~~~d~li~~ag~   98 (255)
T PRK06113         87 GKVDILVNNAGG   98 (255)
T ss_pred             CCCCEEEECCCC
Confidence            378999998874

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=94.46  E-value=0.25  Score=44.16  Aligned_cols=83  Identities=19%  Similarity=0.218  Sum_probs=51.0

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCc--EE--EcCCCCCCccHHHHHHhhc
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVT--EF--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~--~v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      ..++.+|||+|+ |.+|...++.+...|+ +|++++++.++.+.+    ++.+..  .+  .|-...+..++.+.+..+.
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            457889999987 9999998888877899 899999887654332    233321  12  2222101122333222222


Q ss_pred             C--CCccEEEEccCC
Q 016507          270 D--GGADYCFECVGL  282 (388)
Q Consensus       270 ~--g~~dvvid~~g~  282 (388)
                      .  +++|++|.+.+.
T Consensus        88 ~~~~~id~vi~~Ag~  102 (247)
T PRK08945         88 EQFGRLDGVLHNAGL  102 (247)
T ss_pred             HHhCCCCEEEECCcc
Confidence            2  378999998764

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.44  E-value=0.26  Score=43.77  Aligned_cols=79  Identities=22%  Similarity=0.306  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE-EE--cCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|..++..+...|+ +|+++++++++.+.+    +..+... ++  |-.+  ...+.+.+.+...  
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYGVKVVIATADVSD--YEEVTAAIEQLKNEL   82 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            3578999987 9999999998888899 899999887654432    2223221 12  2222  1233333333221  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|.+.|.
T Consensus        83 ~~id~vi~~ag~   94 (239)
T PRK07666         83 GSIDILINNAGI   94 (239)
T ss_pred             CCccEEEEcCcc
Confidence            378999998874

>PRK06849 hypothetical protein; Provisional

Probab=94.43  E-value=1.7  Score=41.86  Aligned_cols=93  Identities=16%  Similarity=0.118  Sum_probs=58.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE--EEcCCCCCCccHHHHHHhhcCC-CccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDG-GADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~--v~~~~~~~~~~~~~~i~~~~~g-~~dvv  276 (388)
                      ...+|||+|+ .++|+..+..++..|+ +|+++++++.......+ .++.  .+.....+.+.+.+.+.++... ++|++
T Consensus         3 ~~~~VLI~G~~~~~~l~iar~l~~~G~-~Vi~~d~~~~~~~~~s~-~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~id~v   80 (389)
T PRK06849          3 TKKTVLITGARAPAALELARLFHNAGH-TVILADSLKYPLSRFSR-AVDGFYTIPSPRWDPDAYIQALLSIVQRENIDLL   80 (389)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHH-hhhheEEeCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence            3578999998 6689999999999999 99999887654332111 2222  2322221224566777776666 89999


Q ss_pred             EEccCCHHHHHHHHHHhhc
Q 016507          277 FECVGLASLVQEAYACCRK  295 (388)
Q Consensus       277 id~~g~~~~~~~~~~~l~~  295 (388)
                      |-+......+......+..
T Consensus        81 IP~~e~~~~~a~~~~~l~~   99 (389)
T PRK06849         81 IPTCEEVFYLSHAKEELSA   99 (389)
T ss_pred             EECChHHHhHHhhhhhhcC
Confidence            9877543223333444544

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.43  E-value=0.33  Score=44.54  Aligned_cols=78  Identities=17%  Similarity=0.245  Sum_probs=56.5

Q ss_pred             CCCCCEEEEEccch-hHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          199 VEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       199 ~~~~~~VlI~Gag~-vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .-.|.+|+|+|.|. +|...+.++...|+ .|+++.+..                      .++.+.+     ..+|+|+
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~~t----------------------~~L~~~~-----~~aDIvI  207 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHSRT----------------------QNLPELV-----KQADIIV  207 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeCCc----------------------hhHHHHh-----ccCCEEE
Confidence            35788999999976 99999999999999 888876411                      2222222     2789999


Q ss_pred             EccCCHHHHHHHHHHhhcCCceEEEEccCC
Q 016507          278 ECVGLASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      .++|.+..+.  .+.++++ ..++.+|...
T Consensus       208 ~AtG~~~~v~--~~~lk~g-avViDvg~n~  234 (283)
T PRK14192        208 GAVGKPELIK--KDWIKQG-AVVVDAGFHP  234 (283)
T ss_pred             EccCCCCcCC--HHHcCCC-CEEEEEEEee
Confidence            9998766332  3568886 8888888643

>PRK07577 short chain dehydrogenase; Provisional

Probab=94.43  E-value=0.16  Score=44.88  Aligned_cols=74  Identities=19%  Similarity=0.219  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc-EEEcCCCCCCccHHHHHHhhcCC-CccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDG-GADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~i~~~~~g-~~dvvi  277 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++.+++++.     +... ...|..+  .+.+.+.+.+.... +.|++|
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~-~v~~~~r~~~~~-----~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~d~vi   73 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGH-QVIGIARSAIDD-----FPGELFACDLAD--IEQTAATLAQINEIHPVDAIV   73 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCcccc-----cCceEEEeeCCC--HHHHHHHHHHHHHhCCCcEEE
Confidence            3578999987 9999999998888898 899998876541     1111 1233333  13333334333333 689999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      .+.|.
T Consensus        74 ~~ag~   78 (234)
T PRK07577         74 NNVGI   78 (234)
T ss_pred             ECCCC
Confidence            98874

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=94.42  E-value=0.26  Score=44.25  Aligned_cols=79  Identities=16%  Similarity=0.283  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|+.+++++++.+.+    ++.+... .  .|-.+  ...+...+.+...  
T Consensus        10 ~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD--EEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            5789999987 9999999988878899 899999887654332    2233211 2  23332  1233333332221  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|.+.|.
T Consensus        87 ~~id~vi~~ag~   98 (256)
T PRK06124         87 GRLDILVNNVGA   98 (256)
T ss_pred             CCCCEEEECCCC
Confidence            378999998874

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.42  E-value=0.4  Score=44.15  Aligned_cols=95  Identities=19%  Similarity=0.246  Sum_probs=67.8

Q ss_pred             ccccchhhhhHHHHHHhcCC-CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~-~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  257 (388)
                      ..+||+...... +++..++ -.|.+|.|+|. +.+|.-.+.++...|+ .|++..+...                    
T Consensus       137 ~~~PcTp~aii~-lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ga-tVtv~~~~t~--------------------  194 (301)
T PRK14194        137 VLTPCTPSGCLR-LLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHC-SVTVVHSRST--------------------  194 (301)
T ss_pred             CCCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEECCCCC--------------------
Confidence            356766555555 4454454 46999999997 6999999999999999 8888754321                    


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                        +..+.++     ..|+|+-++|.+..+...+  ++++ ..++.+|..
T Consensus       195 --~l~e~~~-----~ADIVIsavg~~~~v~~~~--ik~G-aiVIDvgin  233 (301)
T PRK14194        195 --DAKALCR-----QADIVVAAVGRPRLIDADW--LKPG-AVVIDVGIN  233 (301)
T ss_pred             --CHHHHHh-----cCCEEEEecCChhcccHhh--ccCC-cEEEEeccc
Confidence              2222222     6799999999987565544  8887 888899864

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.41  E-value=0.26  Score=44.82  Aligned_cols=78  Identities=17%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch----HHHHHHHcCC--cEEEcCCCCCCccH---HHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE----KFEIGKRFGV--TEFVNSKNCGDKSV---SQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~----~~~~~~~lga--~~v~~~~~~~~~~~---~~~i~~~~~  270 (388)
                      .|+.|||+|+ +++|.+.++=.-.+|+ +++..|.+++    ..+.+++.|-  ..+.|-.+  .++.   ++++++.. 
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~--~eei~~~a~~Vk~e~-  112 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD--REEIYRLAKKVKKEV-  112 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCC--HHHHHHHHHHHHHhc-
Confidence            6899999987 8999886666666687 8888877664    3344444452  22334333  1333   33333322 


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      |.+|++++..|.
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            379999998874

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=94.37  E-value=0.27  Score=43.28  Aligned_cols=91  Identities=10%  Similarity=0.049  Sum_probs=55.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc--hHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~--~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .+.+|||+|+|.+|.-=+..+...|+ +|.++...-  +-.+++ +.|--..+ .++     +.+.-  +  .++++||-
T Consensus        24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~el~~l~-~~~~i~~~-~r~-----~~~~d--l--~g~~LVia   91 (223)
T PRK05562         24 NKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSKEFLDLK-KYGNLKLI-KGN-----YDKEF--I--KDKHLIVI   91 (223)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCHHHHHHH-hCCCEEEE-eCC-----CChHH--h--CCCcEEEE
Confidence            46799999999999887888878898 788875432  222222 22221222 222     11111  1  27899999


Q ss_pred             ccCCHHHHHHHHHHh-hcCCceEEEEcc
Q 016507          279 CVGLASLVQEAYACC-RKGWGKTIVLGV  305 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l-~~~~G~~v~~g~  305 (388)
                      |++.+. ++..+... ... +.++....
T Consensus        92 ATdD~~-vN~~I~~~a~~~-~~lvn~vd  117 (223)
T PRK05562         92 ATDDEK-LNNKIRKHCDRL-YKLYIDCS  117 (223)
T ss_pred             CCCCHH-HHHHHHHHHHHc-CCeEEEcC
Confidence            999887 55444444 443 66666654

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.34  E-value=0.25  Score=44.44  Aligned_cols=79  Identities=22%  Similarity=0.164  Sum_probs=48.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC-chHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhc--CCCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMT--DGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~-~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~--~g~~dv  275 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++.+. ++..+.++..++.. ..|-.+  .+.+.+.+.+..  .++.|+
T Consensus         6 ~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~~~id~   82 (255)
T PRK06463          6 KGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAENEAKELREKGVFTIKCDVGN--RDQVKKSKEVVEKEFGRVDV   82 (255)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHhCCCeEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4678999987 9999999998888899 77776543 33344444334322 223333  123333333322  137999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      +|.+.|.
T Consensus        83 li~~ag~   89 (255)
T PRK06463         83 LVNNAGI   89 (255)
T ss_pred             EEECCCc
Confidence            9998874

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.34  E-value=0.24  Score=49.26  Aligned_cols=70  Identities=27%  Similarity=0.304  Sum_probs=49.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch-----HHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-----KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~-----~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      .+.+|+|+|+|.+|+.++.+++..|+ +|++++..+.     ..+.+++.|+....+...   .     .    ..++|+
T Consensus        15 ~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~---~-----~----~~~~D~   81 (480)
T PRK01438         15 QGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDGDDERHRALAAILEALGATVRLGPGP---T-----L----PEDTDL   81 (480)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchhhhHHHHHHHHHcCCEEEECCCc---c-----c----cCCCCE
Confidence            46789999999999999999999999 8999886542     234466678765543322   1     0    116888


Q ss_pred             EEEccCCH
Q 016507          276 CFECVGLA  283 (388)
Q Consensus       276 vid~~g~~  283 (388)
                      |+-+.|.+
T Consensus        82 Vv~s~Gi~   89 (480)
T PRK01438         82 VVTSPGWR   89 (480)
T ss_pred             EEECCCcC
Confidence            88887754

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=94.33  E-value=0.33  Score=44.35  Aligned_cols=79  Identities=23%  Similarity=0.326  Sum_probs=58.1

Q ss_pred             CCCEEEEEcc-chhHHH-HHHHHHHcCCcEEEEEcCCchHHHHHH-----HcCC---cEEEcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLA-VAEGARLCGATRIIGVDVISEKFEIGK-----RFGV---TEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~-ai~la~~~g~~~Vi~~~~~~~~~~~~~-----~lga---~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      -|+|.+|+|+ .++|.+ |-++|+ .|. +|+.+.|+++|++.++     +.++   .+++|..+.+ . ..+.+++.+.
T Consensus        48 ~g~WAVVTGaTDGIGKayA~eLAk-rG~-nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~-~-~ye~i~~~l~  123 (312)
T KOG1014|consen   48 LGSWAVVTGATDGIGKAYARELAK-RGF-NVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGD-E-VYEKLLEKLA  123 (312)
T ss_pred             cCCEEEEECCCCcchHHHHHHHHH-cCC-EEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCc-h-hHHHHHHHhc
Confidence            4789999998 899976 666777 899 8999999999987654     3453   2367776621 2 4566666666


Q ss_pred             C-CccEEEEccCCH
Q 016507          271 G-GADYCFECVGLA  283 (388)
Q Consensus       271 g-~~dvvid~~g~~  283 (388)
                      + .+-+.++++|..
T Consensus       124 ~~~VgILVNNvG~~  137 (312)
T KOG1014|consen  124 GLDVGILVNNVGMS  137 (312)
T ss_pred             CCceEEEEeccccc
Confidence            6 888999998853

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.32  E-value=0.3  Score=43.29  Aligned_cols=70  Identities=13%  Similarity=0.202  Sum_probs=49.3

Q ss_pred             EEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch--HHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       205 VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~--~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      |+|+|+ |.+|...++.+...+. +|.++.++..  ..+.++..|+..+ .-+-    +-.+.+.+... ++|.||.+++
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~~~~~~~~l~~~g~~vv-~~d~----~~~~~l~~al~-g~d~v~~~~~   73 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDPSSDRAQQLQALGAEVV-EADY----DDPESLVAALK-GVDAVFSVTP   73 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSSHHHHHHHHHHTTTEEE-ES-T----T-HHHHHHHHT-TCSEEEEESS
T ss_pred             CEEECCccHHHHHHHHHHHhCCC-CcEEEEeccchhhhhhhhcccceEe-eccc----CCHHHHHHHHc-CCceEEeecC
Confidence            789998 9999999999988888 8999888764  3455677888644 2222    11233333332 8999999888

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK06484 short chain dehydrogenase; Validated

Probab=94.32  E-value=0.19  Score=50.46  Aligned_cols=79  Identities=16%  Similarity=0.272  Sum_probs=53.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE---EEcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE---FVNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~---v~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ +.+|.+.++.+...|+ +|+.++++.++.+.+ ++++...   ..|-.+  .+.+.+.+.+...  +++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVERARERADSLGPDHHALAMDVSD--EAQIREGFEQLHREFGRI   80 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEeccCC--HHHHHHHHHHHHHHhCCC
Confidence            5678999987 9999999999988999 899998888776543 4455432   234333  1333333333221  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        81 D~li~nag~   89 (520)
T PRK06484         81 DVLVNNAGV   89 (520)
T ss_pred             CEEEECCCc
Confidence            999998874

>PLN03075 nicotianamine synthase; Provisional

Probab=94.31  E-value=0.34  Score=44.52  Aligned_cols=98  Identities=13%  Similarity=0.113  Sum_probs=63.4

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHcC-----CcEEEcCCCCCCccHHHHHHhhcCCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFG-----VTEFVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~lg-----a~~v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      .+.++|+-+|.|+.++.++.+++... -.+++.++.+++..+.++++-     ...-+....   .+..+...  ..++|
T Consensus       122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~---~Da~~~~~--~l~~F  196 (296)
T PLN03075        122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHT---ADVMDVTE--SLKEY  196 (296)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEE---Cchhhccc--ccCCc
Confidence            37799999999999998888886543 238999999999888887642     111111111   12221110  12389


Q ss_pred             cEEEEcc------CC-HHHHHHHHHHhhcCCceEEEE
Q 016507          274 DYCFECV------GL-ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       274 dvvid~~------g~-~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      |+||-.+      .. ...+....+.|++| |.++.=
T Consensus       197 DlVF~~ALi~~dk~~k~~vL~~l~~~LkPG-G~Lvlr  232 (296)
T PLN03075        197 DVVFLAALVGMDKEEKVKVIEHLGKHMAPG-ALLMLR  232 (296)
T ss_pred             CEEEEecccccccccHHHHHHHHHHhcCCC-cEEEEe
Confidence            9998764      11 24468888999996 776644

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=94.31  E-value=0.2  Score=45.80  Aligned_cols=75  Identities=20%  Similarity=0.183  Sum_probs=44.1

Q ss_pred             EEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c----C---CcEE--EcCCCCCCccHHHHHHhhcCC-C
Q 016507          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----G---VTEF--VNSKNCGDKSVSQIIIDMTDG-G  272 (388)
Q Consensus       205 VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l----g---a~~v--~~~~~~~~~~~~~~i~~~~~g-~  272 (388)
                      |||+|+ |++|...++-+...+..+++.+++++.++..++. +    .   ....  ..-.+   -.-.+.+...... +
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigD---vrd~~~l~~~~~~~~   77 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGD---VRDKERLNRIFEEYK   77 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTS---CCHHHHHHHHTT--T
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeec---ccCHHHHHHHHhhcC
Confidence            799987 9999998888888887799999999987755443 3    1   1111  00111   1223445555545 9


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+||++..-
T Consensus        78 pdiVfHaAA~   87 (293)
T PF02719_consen   78 PDIVFHAAAL   87 (293)
T ss_dssp             -SEEEE----
T ss_pred             CCEEEEChhc
Confidence            9999998764

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.30  E-value=0.19  Score=47.62  Aligned_cols=75  Identities=12%  Similarity=0.109  Sum_probs=48.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcC----CcEE-EcCCCCCCccHHHHHHhhcCC-C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFG----VTEF-VNSKNCGDKSVSQIIIDMTDG-G  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lg----a~~v-~~~~~~~~~~~~~~i~~~~~g-~  272 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++++++..... ...++    ...+ .|-.+      .+.+.++..+ +
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~------~~~~~~~~~~~~   75 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRD------AAKLRKAIAEFK   75 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCCCccchhHHHHHhhcCCceEEEccCCC------HHHHHHHHhhcC
Confidence            4678999987 9999999999988898 89998876654321 12222    1111 12222      2233333333 7


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+||++.+.
T Consensus        76 ~d~vih~A~~   85 (349)
T TIGR02622        76 PEIVFHLAAQ   85 (349)
T ss_pred             CCEEEECCcc
Confidence            8999999873

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=94.30  E-value=0.24  Score=47.83  Aligned_cols=105  Identities=15%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             CCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH-------HHHHc-CCcEE-EcCCCCCCccHHHHHHh
Q 016507          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-------IGKRF-GVTEF-VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       198 ~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-------~~~~l-ga~~v-~~~~~~~~~~~~~~i~~  267 (388)
                      +-..+.+|||+|+ |.+|..+++.+...|+ +|++++++..+.+       ..... ++..+ .|..+  ...+.+.+..
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~~l~~~~~~  132 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTD--ADSLRKVLFS  132 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCC--HHHHHHHHHH
Confidence            3456779999987 9999999998888899 8999988765421       11111 33322 23333  1223333322


Q ss_pred             hcCCCccEEEEccCCH------------HHHHHHHHHhhcC-CceEEEEccC
Q 016507          268 MTDGGADYCFECVGLA------------SLVQEAYACCRKG-WGKTIVLGVD  306 (388)
Q Consensus       268 ~~~g~~dvvid~~g~~------------~~~~~~~~~l~~~-~G~~v~~g~~  306 (388)
                      . ++++|+||+|.+..            .....+++.+... -++++.++..
T Consensus       133 ~-~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~  183 (390)
T PLN02657        133 E-GDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAI  183 (390)
T ss_pred             h-CCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence            2 11699999988642            1122344444432 1468877653

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.28  E-value=0.86  Score=40.63  Aligned_cols=103  Identities=22%  Similarity=0.201  Sum_probs=59.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC-chHH-H---HHHHcCCc-EE--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKF-E---IGKRFGVT-EF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~-~~~~-~---~~~~lga~-~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+.+.++ .+.. +   .++..+.. ..  .|..+  ...+...+.+... 
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   81 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGS-LVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVST--REGCETLAKATIDR   81 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCC--HHHHHHHHHHHHHH
Confidence            3578999987 9999998888888899 67665433 2222 2   22233332 12  23332  1222222222211 


Q ss_pred             -CCccEEEEccCC----------H---------------HHHHHHHHHhhcCCceEEEEccCC
Q 016507          271 -GGADYCFECVGL----------A---------------SLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       271 -g~~dvvid~~g~----------~---------------~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                       +++|++|.+.|.          .               ...+.+++.+... |+++.++...
T Consensus        82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~iv~~sS~~  143 (252)
T PRK06077         82 YGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREG-GAIVNIASVA  143 (252)
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcC-cEEEEEcchh
Confidence             378999999973          0               0123445555675 8999888643

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.27  E-value=0.37  Score=44.00  Aligned_cols=94  Identities=16%  Similarity=0.240  Sum_probs=66.3

Q ss_pred             cccchhhhhHHHHHHhcCCC-CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCC
Q 016507          181 LLSCGVSTGVGAAWRTANVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~-~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  258 (388)
                      .+||+....+. +.+..++. .|.+|+|+|. ..+|.-.+.++...|+ .|+...+.                   .   
T Consensus       137 ~~PcTp~aii~-lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~a-tVt~~hs~-------------------t---  192 (285)
T PRK14189        137 FRPCTPYGVMK-MLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGA-TVTICHSK-------------------T---  192 (285)
T ss_pred             CcCCCHHHHHH-HHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEecCC-------------------C---
Confidence            45665555444 34444543 6899999997 5559999999999999 88875321                   1   


Q ss_pred             ccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          259 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       259 ~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .++.+.++     ..|+|+-++|.+..+..  +.++++ ..++.+|..
T Consensus       193 ~~l~~~~~-----~ADIVV~avG~~~~i~~--~~ik~g-avVIDVGin  232 (285)
T PRK14189        193 RDLAAHTR-----QADIVVAAVGKRNVLTA--DMVKPG-ATVIDVGMN  232 (285)
T ss_pred             CCHHHHhh-----hCCEEEEcCCCcCccCH--HHcCCC-CEEEEcccc
Confidence            33433332     68999999998874443  788997 889999864

>PLN02928 oxidoreductase family protein

Probab=94.27  E-value=0.32  Score=46.16  Aligned_cols=96  Identities=23%  Similarity=0.354  Sum_probs=59.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC-----CcEEEcCCCCCCccHHHHHHhhcCCCccE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-----VTEFVNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg-----a~~v~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      .|.+|.|+|.|.+|..+++.++.+|+ +|++.+++..+... ..++     ...+.+... ...++.+.+.     ..|+
T Consensus       158 ~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~L~ell~-----~aDi  229 (347)
T PLN02928        158 FGKTVFILGYGAIGIELAKRLRPFGV-KLLATRRSWTSEPE-DGLLIPNGDVDDLVDEKG-GHEDIYEFAG-----EADI  229 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECCCCChhhh-hhhccccccccccccccC-cccCHHHHHh-----hCCE
Confidence            57899999999999999999999999 99999876432111 1110     000111000 0123333332     5788


Q ss_pred             EEEccCCHHH-----HHHHHHHhhcCCceEEEEcc
Q 016507          276 CFECVGLASL-----VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       276 vid~~g~~~~-----~~~~~~~l~~~~G~~v~~g~  305 (388)
                      |+-+.+....     -...+..|+++ ..+|.+|.
T Consensus       230 Vvl~lPlt~~T~~li~~~~l~~Mk~g-a~lINvaR  263 (347)
T PLN02928        230 VVLCCTLTKETAGIVNDEFLSSMKKG-ALLVNIAR  263 (347)
T ss_pred             EEECCCCChHhhcccCHHHHhcCCCC-eEEEECCC
Confidence            8887764321     14667778886 77777763

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=94.26  E-value=1.3  Score=41.59  Aligned_cols=130  Identities=22%  Similarity=0.227  Sum_probs=80.0

Q ss_pred             EEEEEccchhH-HHHHHHHHHcC--CcEEEEEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          204 TVVIFGLGSIG-LAVAEGARLCG--ATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       204 ~VlI~Gag~vG-~~ai~la~~~g--~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +|.|+|.|.++ ...+..++..+  +.-+.+.++++++.+ .++++|..+++       .++.+.+..   ..+|+|+-+
T Consensus         5 rvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~-------~~~~~ll~~---~~iD~V~Ia   74 (342)
T COG0673           5 RVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAY-------TDLEELLAD---PDIDAVYIA   74 (342)
T ss_pred             EEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCccc-------CCHHHHhcC---CCCCEEEEc
Confidence            68899987554 44555555544  434555577887754 56668876333       234333322   269999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH------Hh-cCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          280 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV------LH-SGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~------~~-~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      +......+.+.+.|..  |+=|++-     +++..++...      -. +++.+.-...  +.....++.+-+++.+|.+
T Consensus        75 tp~~~H~e~~~~AL~a--GkhVl~E-----KPla~t~~ea~~l~~~a~~~~~~l~v~~~--~Rf~p~~~~~k~li~~g~l  145 (342)
T COG0673          75 TPNALHAELALAALEA--GKHVLCE-----KPLALTLEEAEELVELARKAGVKLMVGFN--RRFDPAVQALKELIDSGAL  145 (342)
T ss_pred             CCChhhHHHHHHHHhc--CCEEEEc-----CCCCCCHHHHHHHHHHHHHcCCceeeehh--hhcCHHHHHHHHHHhcCCc
Confidence            9998889999999987  5655553     5555555432      12 2333332221  2223567888888888844

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.25  E-value=0.2  Score=45.78  Aligned_cols=71  Identities=20%  Similarity=0.064  Sum_probs=50.8

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccE
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      .+...+.+++|+|+|+.+.+++..+...|+.+|+++.|+.++.+.+.+ ++..            +.+.+.   ...+|+
T Consensus       117 ~~~~~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~------------~~~~~~---~~~~dl  181 (272)
T PRK12550        117 YQVPPDLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYE------------WRPDLG---GIEADI  181 (272)
T ss_pred             cCCCCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCc------------chhhcc---cccCCE
Confidence            344556799999999999999999999999789999999887765543 3311            101111   126899


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      ||+|++.
T Consensus       182 vINaTp~  188 (272)
T PRK12550        182 LVNVTPI  188 (272)
T ss_pred             EEECCcc
Confidence            9999864

>PRK07791 short chain dehydrogenase; Provisional

Probab=94.25  E-value=0.34  Score=44.54  Aligned_cols=36  Identities=33%  Similarity=0.362  Sum_probs=29.8

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ..+.++||+|+ +++|.+.++.+...|+ +|++++++.
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~   40 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGV   40 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCc
Confidence            45789999987 9999999988888899 788876653

>PRK08278 short chain dehydrogenase; Provisional

Probab=94.25  E-value=0.25  Score=45.00  Aligned_cols=36  Identities=39%  Similarity=0.426  Sum_probs=30.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|++++++.+
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~   41 (273)
T PRK08278          5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAE   41 (273)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccc
Confidence            4678999987 9999999998888899 8998887653

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=94.25  E-value=0.46  Score=43.91  Aligned_cols=70  Identities=16%  Similarity=0.162  Sum_probs=49.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+...        .+..+.+     ...|+||.|+...
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~g~~~~--------~~~~e~~-----~~~d~vi~~vp~~   69 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIAAGAETA--------STAKAVA-----EQCDVIITMLPNS   69 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec--------CCHHHHH-----hcCCEEEEeCCCH
Confidence            68999999999987777777888 89999999888877776665311        1122222     1568888887765


Q ss_pred             HHHH
Q 016507          284 SLVQ  287 (388)
Q Consensus       284 ~~~~  287 (388)
                      ..+.
T Consensus        70 ~~~~   73 (296)
T PRK11559         70 PHVK   73 (296)
T ss_pred             HHHH
Confidence            4343

>PRK04457 spermidine synthase; Provisional

Probab=94.24  E-value=0.53  Score=42.76  Aligned_cols=95  Identities=13%  Similarity=0.148  Sum_probs=63.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-CC----c--EEEcCCCCCCccHHHHHHhhcCCC
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV----T--EFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-ga----~--~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      .++.+||++|.|. |.++..+++.....+|++++.+++-.+.+++. +.    +  .++.      .+..+.+.+. .+.
T Consensus        65 ~~~~~vL~IG~G~-G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~------~Da~~~l~~~-~~~  136 (262)
T PRK04457         65 PRPQHILQIGLGG-GSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIE------ADGAEYIAVH-RHS  136 (262)
T ss_pred             CCCCEEEEECCCH-hHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEE------CCHHHHHHhC-CCC
Confidence            4567899999865 77777887776434999999999988888763 32    1  1222      2333444332 347


Q ss_pred             ccEEE-EccCC---------HHHHHHHHHHhhcCCceEEEE
Q 016507          273 ADYCF-ECVGL---------ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       273 ~dvvi-d~~g~---------~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      ||+|+ |+...         ...++.+.+.|+++ |.++.-
T Consensus       137 yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pg-Gvlvin  176 (262)
T PRK04457        137 TDVILVDGFDGEGIIDALCTQPFFDDCRNALSSD-GIFVVN  176 (262)
T ss_pred             CCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCC-cEEEEE
Confidence            99996 43221         35578899999997 998763

>PRK12743 oxidoreductase; Provisional

Probab=94.24  E-value=0.29  Score=44.00  Aligned_cols=78  Identities=18%  Similarity=0.081  Sum_probs=46.8

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHH----HHHcCCc-EE--EcCCCCCCccHHHHHHhhcC--
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~----~~~lga~-~v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      +.+|||+|+ |.+|..+++.+...|+ +|+.+.+ +.++.+.    ++..+.. +.  .|-.+  .+.+...+.+...  
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   78 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGF-DIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSD--LPEGAQALDKLIQRL   78 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            468999987 9999999999888999 7877644 4433322    2234432 22  23332  1222222222211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|.+.|.
T Consensus        79 ~~id~li~~ag~   90 (256)
T PRK12743         79 GRIDVLVNNAGA   90 (256)
T ss_pred             CCCCEEEECCCC
Confidence            378999998874

>PRK06940 short chain dehydrogenase; Provisional

Probab=94.23  E-value=0.28  Score=44.78  Aligned_cols=77  Identities=25%  Similarity=0.345  Sum_probs=48.0

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HH---cCCcE-E--EcCCCCCCccHHHHHHhhc-CCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KR---FGVTE-F--VNSKNCGDKSVSQIIIDMT-DGGA  273 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~---lga~~-v--~~~~~~~~~~~~~~i~~~~-~g~~  273 (388)
                      +.++||+|+|.+|..++..+. .|+ +|+.+++++++.+.+ +.   .+... .  .|-.+  .+.+.+.+.+.. .+++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~i~~~~~~~~~~g~i   77 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSS--RESVKALAATAQTLGPV   77 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCC--HHHHHHHHHHHHhcCCC
Confidence            357888899999999888874 788 899998887655432 22   23221 2  23333  123333333321 1479


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        78 d~li~nAG~   86 (275)
T PRK06940         78 TGLVHTAGV   86 (275)
T ss_pred             CEEEECCCc
Confidence            999999884

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=94.19  E-value=0.31  Score=44.11  Aligned_cols=79  Identities=23%  Similarity=0.389  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE---EEcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE---FVNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~---v~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ +.+|...+..+...|+ +|+.+++++++.+.+.    +.+...   ..|-.+  .....+.+.+...  
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   85 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTD--EDGVQAMVSQIEKEV   85 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHhC
Confidence            5678999987 9999998888888899 8888888876654322    234322   123332  1222222222211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        86 ~~id~li~~ag~   97 (265)
T PRK07097         86 GVIDILVNNAGI   97 (265)
T ss_pred             CCCCEEEECCCC
Confidence            368999999874

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.16  E-value=0.36  Score=49.03  Aligned_cols=76  Identities=11%  Similarity=0.181  Sum_probs=57.9

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +.|+|.|.|.+|...++.++..|. ++++++.++++.+.+++.|...+.-...     -.+.+++..-..+|.++-+++.
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~g~~~i~GD~~-----~~~~L~~a~i~~a~~viv~~~~  491 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRTRVDELRERGIRAVLGNAA-----NEEIMQLAHLDCARWLLLTIPN  491 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHCCCeEEEcCCC-----CHHHHHhcCccccCEEEEEcCC
Confidence            689999999999999999999998 8999999999999999888765553222     1333433322278988878776


Q ss_pred             HH
Q 016507          283 AS  284 (388)
Q Consensus       283 ~~  284 (388)
                      +.
T Consensus       492 ~~  493 (558)
T PRK10669        492 GY  493 (558)
T ss_pred             hH
Confidence            54

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=94.15  E-value=0.49  Score=42.18  Aligned_cols=105  Identities=15%  Similarity=0.191  Sum_probs=64.5

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~  267 (388)
                      +....+..+..+||-+|.| +|..++.+++.++ ..+|+.++.+++..+.+++    .|...-+....   .+..+.+.+
T Consensus        60 L~~l~~~~~~~~vLEiGt~-~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~---gda~~~L~~  135 (234)
T PLN02781         60 LSMLVKIMNAKNTLEIGVF-TGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQ---SDALSALDQ  135 (234)
T ss_pred             HHHHHHHhCCCEEEEecCc-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---ccHHHHHHH
Confidence            3345567778899999863 2555556666543 3499999999988777654    45432222112   233444444


Q ss_pred             hc----CCCccEEEEccC---CHHHHHHHHHHhhcCCceEEE
Q 016507          268 MT----DGGADYCFECVG---LASLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       268 ~~----~g~~dvvid~~g---~~~~~~~~~~~l~~~~G~~v~  302 (388)
                      +.    .+.||+||--..   -...+..+++.+++| |.++.
T Consensus       136 l~~~~~~~~fD~VfiDa~k~~y~~~~~~~~~ll~~G-G~ii~  176 (234)
T PLN02781        136 LLNNDPKPEFDFAFVDADKPNYVHFHEQLLKLVKVG-GIIAF  176 (234)
T ss_pred             HHhCCCCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-eEEEE
Confidence            32    237999975432   123377889999997 87664

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=94.14  E-value=0.28  Score=43.31  Aligned_cols=72  Identities=15%  Similarity=0.222  Sum_probs=48.1

Q ss_pred             EEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcE-EEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       205 VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~-v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      |||+|+ |.+|..++..+...|. .|+++.+++........ ..... ..|..+  .+.+.+.+...   .+|+||++.+
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~--~~~~~~~~~~~---~~d~vi~~a~   74 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGH-EVIVLSRSSNSESFEEKKLNVEFVIGDLTD--KEQLEKLLEKA---NIDVVIHLAA   74 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTT-EEEEEESCSTGGHHHHHHTTEEEEESETTS--HHHHHHHHHHH---TESEEEEEBS
T ss_pred             EEEEccCCHHHHHHHHHHHHcCC-ccccccccccccccccccceEEEEEeeccc--ccccccccccc---CceEEEEeec
Confidence            799997 9999999999999999 78888777766554433 23322 223332  12233333322   7899999988


Q ss_pred             C
Q 016507          282 L  282 (388)
Q Consensus       282 ~  282 (388)
                      .
T Consensus        75 ~   75 (236)
T PF01370_consen   75 F   75 (236)
T ss_dssp             S
T ss_pred             c
Confidence            6

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PRK07102 short chain dehydrogenase; Provisional

Probab=94.12  E-value=0.4  Score=42.70  Aligned_cols=76  Identities=20%  Similarity=0.196  Sum_probs=47.5

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHc----CCc-EEE--cCCCCCCccHHHHHHhhcCCCc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF----GVT-EFV--NSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~l----ga~-~v~--~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      .+++|+|+ |.+|...++.+...|+ +|+++++++++.+.+ +.+    +.. +++  |-.+  ..++.+.+.+. ...+
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~-~~~~   77 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILD--TASHAAFLDSL-PALP   77 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC--hHHHHHHHHHH-hhcC
Confidence            47899987 9999999998888899 899999888765432 221    111 122  2222  12233333322 2257


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++.+.|.
T Consensus        78 d~vv~~ag~   86 (243)
T PRK07102         78 DIVLIAVGT   86 (243)
T ss_pred             CEEEECCcC
Confidence            999987764

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=94.11  E-value=0.66  Score=41.87  Aligned_cols=99  Identities=20%  Similarity=0.201  Sum_probs=65.2

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc-EEEcCCCCCCccHHHHHHhhcC-
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      +.....+.++++||=+|.|. |..+..+++.....+|++++.++...+.+++.-.. .++..      +..    ++.. 
T Consensus        23 ll~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~------d~~----~~~~~   91 (258)
T PRK01683         23 LLARVPLENPRYVVDLGCGP-GNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEA------DIA----SWQPP   91 (258)
T ss_pred             HHhhCCCcCCCEEEEEcccC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEEC------chh----ccCCC
Confidence            34555677889999998754 66677777766434999999999888877664221 12221      111    1112 


Q ss_pred             CCccEEEEccCC------HHHHHHHHHHhhcCCceEEEE
Q 016507          271 GGADYCFECVGL------ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       271 g~~dvvid~~g~------~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      ..||+|+....-      ...+..+.+.|+++ |.++..
T Consensus        92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~~~~~  129 (258)
T PRK01683         92 QALDLIFANASLQWLPDHLELFPRLVSLLAPG-GVLAVQ  129 (258)
T ss_pred             CCccEEEEccChhhCCCHHHHHHHHHHhcCCC-cEEEEE
Confidence            279999764432      24478899999997 998775

>PRK08303 short chain dehydrogenase; Provisional

Probab=94.09  E-value=0.29  Score=45.50  Aligned_cols=34  Identities=18%  Similarity=0.202  Sum_probs=29.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .+.++||+|+ +++|.++++.+...|+ +|++++++
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~   41 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRS   41 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecc
Confidence            4789999987 8999999998888999 89888876

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.08  E-value=0.47  Score=43.36  Aligned_cols=95  Identities=21%  Similarity=0.286  Sum_probs=66.5

Q ss_pred             ccccchhhhhHHHHHHhcCCC-CCCEEEEEccc-hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~-~~~~VlI~Gag-~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  257 (388)
                      ..+||+....+. +.+..++. .|.+|+|+|.| .+|.-++.++...|+ .|.+..+.                   +  
T Consensus       135 ~~~PcTp~avi~-lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gA-tVtv~hs~-------------------t--  191 (285)
T PRK14191        135 GFVPATPMGVMR-LLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGA-SVSVCHIL-------------------T--  191 (285)
T ss_pred             CCCCCcHHHHHH-HHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-EEEEEeCC-------------------c--
Confidence            346766665555 44555554 69999999975 999999999999999 78776321                   1  


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       .++.+.++     ..|+|+-++|.+..+.  -+.++++ ..++.+|..
T Consensus       192 -~~l~~~~~-----~ADIvV~AvG~p~~i~--~~~vk~G-avVIDvGi~  231 (285)
T PRK14191        192 -KDLSFYTQ-----NADIVCVGVGKPDLIK--ASMVKKG-AVVVDIGIN  231 (285)
T ss_pred             -HHHHHHHH-----hCCEEEEecCCCCcCC--HHHcCCC-cEEEEeecc
Confidence             22333332     6899999999887333  3467887 888999864

>PLN00016 RNA-binding protein; Provisional

Probab=94.08  E-value=0.51  Score=45.36  Aligned_cols=95  Identities=16%  Similarity=0.126  Sum_probs=59.5

Q ss_pred             CCEEEEE----cc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH-----------HHHcCCcEEEcCCCCCCccHHHHH
Q 016507          202 GSTVVIF----GL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-----------GKRFGVTEFVNSKNCGDKSVSQII  265 (388)
Q Consensus       202 ~~~VlI~----Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-----------~~~lga~~v~~~~~~~~~~~~~~i  265 (388)
                      ..+|||+    |+ |.+|..++..+...|+ +|++++++++....           +...++..+.       .++.+ +
T Consensus        52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~-------~D~~d-~  122 (378)
T PLN00016         52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVW-------GDPAD-V  122 (378)
T ss_pred             cceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccCchhhhhHhhhcCceEEE-------ecHHH-H
Confidence            3689999    98 9999999998888898 99999887654221           1223444332       12222 2


Q ss_pred             HhhcCC-CccEEEEccCCHH-HHHHHHHHhhcC-CceEEEEcc
Q 016507          266 IDMTDG-GADYCFECVGLAS-LVQEAYACCRKG-WGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g-~~dvvid~~g~~~-~~~~~~~~l~~~-~G~~v~~g~  305 (388)
                      .+.... ++|+|+++.+... ....+++.+... -.+++.++.
T Consensus       123 ~~~~~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS  165 (378)
T PLN00016        123 KSKVAGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS  165 (378)
T ss_pred             HhhhccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            222223 8999999977432 244556666543 136776664

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.08  E-value=0.41  Score=44.48  Aligned_cols=81  Identities=21%  Similarity=0.318  Sum_probs=46.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-hHH-HH---HHHcCCcEEEcCCCCCCccHHHHHHhhc--CCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKF-EI---GKRFGVTEFVNSKNCGDKSVSQIIIDMT--DGG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-~~~-~~---~~~lga~~v~~~~~~~~~~~~~~i~~~~--~g~  272 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|++.++.. ++. +.   ++..|....+..-+..+.+-.+.+.+..  .|+
T Consensus        11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g~   89 (306)
T PRK07792         11 SGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLGG   89 (306)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            4678999987 9999998888888899 888887643 222 22   2233432222211111122222222111  248


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|++|++.|.
T Consensus        90 iD~li~nAG~   99 (306)
T PRK07792         90 LDIVVNNAGI   99 (306)
T ss_pred             CCEEEECCCC
Confidence            9999998874

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=94.07  E-value=0.32  Score=42.82  Aligned_cols=88  Identities=19%  Similarity=0.147  Sum_probs=53.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc----------hHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS----------EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~----------~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      ..|.+|+|.|.|.+|..+++++...|++.|.+++.+.          +..+..+..+....+...+   .--.+.+..  
T Consensus        21 l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~---~~~~~~l~~--   95 (217)
T cd05211          21 LEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQD---YFPGEAILG--   95 (217)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCccc---ccCccccee--
Confidence            3678999999999999999999999985666677666          5666555543221111100   000011211  


Q ss_pred             CCCccEEEEccCCHHHHHHHHHHh
Q 016507          270 DGGADYCFECVGLASLVQEAYACC  293 (388)
Q Consensus       270 ~g~~dvvid~~g~~~~~~~~~~~l  293 (388)
                       -++|+++.|......-......+
T Consensus        96 -~~~DVlipaA~~~~i~~~~a~~l  118 (217)
T cd05211          96 -LDVDIFAPCALGNVIDLENAKKL  118 (217)
T ss_pred             -ccccEEeeccccCccChhhHhhc
Confidence             17899999887664333333333

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK01581 speE spermidine synthase; Validated

Probab=94.06  E-value=1  Score=42.61  Aligned_cols=104  Identities=13%  Similarity=0.062  Sum_probs=64.6

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC-Cc----EEEcCCCC--CCccHHHHHHhhcCC
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VT----EFVNSKNC--GDKSVSQIIIDMTDG  271 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg-a~----~v~~~~~~--~~~~~~~~i~~~~~g  271 (388)
                      .....+|||+|+| .|.++..+++..+..+|++++.+++-.+.++++. ..    ..++....  ...+..+.+.+ ..+
T Consensus       148 h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-~~~  225 (374)
T PRK01581        148 VIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-PSS  225 (374)
T ss_pred             CCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-cCC
Confidence            3445699999865 4667778888776669999999999899888631 00    00000000  00223334433 334


Q ss_pred             CccEEEEccCC-----------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          272 GADYCFECVGL-----------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       272 ~~dvvid~~g~-----------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .||+||--...           ...+..+.+.|+++ |.++....
T Consensus       226 ~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPg-GV~V~Qs~  269 (374)
T PRK01581        226 LYDVIIIDFPDPATELLSTLYTSELFARIATFLTED-GAFVCQSN  269 (374)
T ss_pred             CccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            89999654322           12367888999997 99887654

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.02  E-value=0.45  Score=43.44  Aligned_cols=94  Identities=17%  Similarity=0.282  Sum_probs=67.2

Q ss_pred             cccchhhhhHHHHHHhcCCC-CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCC
Q 016507          181 LLSCGVSTGVGAAWRTANVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~-~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  258 (388)
                      .+||+....+. +++..++. .|.+|+|+|- ..+|.-++.++...|+ .|++..+.                   .   
T Consensus       138 ~~PcTp~av~~-ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~a-tVtv~hs~-------------------T---  193 (285)
T PRK10792        138 LRPCTPRGIMT-LLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGC-TVTVCHRF-------------------T---  193 (285)
T ss_pred             CCCCCHHHHHH-HHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCC-eEEEEECC-------------------C---
Confidence            45766665555 44555543 6999999997 5599999999999999 88887542                   1   


Q ss_pred             ccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          259 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       259 ~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .++.+.++     .+|+++.++|.+..+..  +.++++ ..++.+|..
T Consensus       194 ~~l~~~~~-----~ADIvi~avG~p~~v~~--~~vk~g-avVIDvGin  233 (285)
T PRK10792        194 KNLRHHVR-----NADLLVVAVGKPGFIPG--EWIKPG-AIVIDVGIN  233 (285)
T ss_pred             CCHHHHHh-----hCCEEEEcCCCcccccH--HHcCCC-cEEEEcccc
Confidence            23333332     68999999998874433  778887 888899864

>PRK05650 short chain dehydrogenase; Provisional

Probab=93.99  E-value=0.29  Score=44.43  Aligned_cols=76  Identities=22%  Similarity=0.232  Sum_probs=47.7

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE-EE--cCCCCCCccHHHHHHhhc--CCCc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      +|||+|+ |.+|...++.+...|+ +|+.++++.++.+.+    +..+.+. ++  |-.+  ...+.+.+.+..  .+++
T Consensus         2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~i~~~~~~i   78 (270)
T PRK05650          2 RVMITGAASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAGGDGFYQRCDVRD--YSQLTALAQACEEKWGGI   78 (270)
T ss_pred             EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            6899987 9999999888888899 899998887665432    2223222 12  2222  122233222221  1379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|.+.|.
T Consensus        79 d~lI~~ag~   87 (270)
T PRK05650         79 DVIVNNAGV   87 (270)
T ss_pred             CEEEECCCC
Confidence            999999874

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=93.99  E-value=0.56  Score=45.89  Aligned_cols=105  Identities=12%  Similarity=0.178  Sum_probs=64.4

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCc-EE--EcCCCCCCccHHHHHH
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSVSQIII  266 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~-~v--~~~~~~~~~~~~~~i~  266 (388)
                      .....+.+|++||=+|+|+ |..++.+++.++-.+|++++.++++.+.++    ++|.+ .+  .+.+.   ..... . 
T Consensus       231 ~~~L~~~~g~~VLDlcag~-G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~---~~~~~-~-  304 (426)
T TIGR00563       231 ATWLAPQNEETILDACAAP-GGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG---RGPSQ-W-  304 (426)
T ss_pred             HHHhCCCCCCeEEEeCCCc-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc---ccccc-c-
Confidence            3456788999999988754 444445555554238999999999877654    35654 22  22111   11100 0 


Q ss_pred             hhcCCCccEEEE---ccCC-------------------------HHHHHHHHHHhhcCCceEEEEccC
Q 016507          267 DMTDGGADYCFE---CVGL-------------------------ASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       267 ~~~~g~~dvvid---~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       ...+.||.||-   |+|.                         ...+..+++.++++ |+++....+
T Consensus       305 -~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkpg-G~lvystcs  370 (426)
T TIGR00563       305 -AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTG-GTLVYATCS  370 (426)
T ss_pred             -ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCC-cEEEEEeCC
Confidence             01127999964   5542                         13467888999997 999876543

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=93.98  E-value=0.34  Score=41.87  Aligned_cols=100  Identities=12%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCcEEEcCCCCCCccHHHHHHhh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      +.+.....++.+||-+|.|. |..++.+++ .|. +|++++.++.-.+.+++.    +....+..     .+... . .+
T Consensus        22 l~~~~~~~~~~~vLDiGcG~-G~~a~~la~-~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~-----~d~~~-~-~~   91 (195)
T TIGR00477        22 VREAVKTVAPCKTLDLGCGQ-GRNSLYLSL-AGY-DVRAWDHNPASIASVLDMKARENLPLRTDA-----YDINA-A-AL   91 (195)
T ss_pred             HHHHhccCCCCcEEEeCCCC-CHHHHHHHH-CCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEe-----ccchh-c-cc
Confidence            33444555667899988744 666666666 477 999999998777665432    33211110     11110 0 11


Q ss_pred             cCCCccEEEEccC-----C---HHHHHHHHHHhhcCCceEEEEc
Q 016507          269 TDGGADYCFECVG-----L---ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       269 ~~g~~dvvid~~g-----~---~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                       .+.||+|+....     .   ...+..+.+.|+++ |.++.+.
T Consensus        92 -~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lli~~  133 (195)
T TIGR00477        92 -NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPG-GYNLIVA  133 (195)
T ss_pred             -cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCC-cEEEEEE
Confidence             237999976432     1   23467888889997 9865543

Part of a tellurite-reducing operon tehA and tehB

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=93.97  E-value=0.29  Score=44.04  Aligned_cols=100  Identities=15%  Similarity=0.139  Sum_probs=60.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc--CCcEE-EcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF--GVTEF-VNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l--ga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|+++.+++++.......  ++..+ .|..+   .  .+.+.+....++|+|
T Consensus        16 ~~~~ilItGasG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d---~--~~~l~~~~~~~~d~v   89 (251)
T PLN00141         16 KTKTVFVAGATGRTGKRIVEQLLAKGF-AVKAGVRDVDKAKTSLPQDPSLQIVRADVTE---G--SDKLVEAIGDDSDAV   89 (251)
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHhCCC-EEEEEecCHHHHHHhcccCCceEEEEeeCCC---C--HHHHHHHhhcCCCEE
Confidence            4578999997 9999999988877898 898888877664432211  23222 23322   1  122323221279999


Q ss_pred             EEccCCHH-------------HHHHHHHHhhcC-CceEEEEccC
Q 016507          277 FECVGLAS-------------LVQEAYACCRKG-WGKTIVLGVD  306 (388)
Q Consensus       277 id~~g~~~-------------~~~~~~~~l~~~-~G~~v~~g~~  306 (388)
                      |.+.|...             ....+++.+... .++++.++..
T Consensus        90 i~~~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~  133 (251)
T PLN00141         90 ICATGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSI  133 (251)
T ss_pred             EECCCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccc
Confidence            98876421             134445555442 2578877653

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=93.96  E-value=0.27  Score=44.75  Aligned_cols=132  Identities=18%  Similarity=0.175  Sum_probs=86.3

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC--------CCccHHHHHHhh
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC--------GDKSVSQIIIDM  268 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~--------~~~~~~~~i~~~  268 (388)
                      +...++.++++.|+|.+|+.++-.++..|+ -|...+....+.+-.+++|+..+-..++.        .++++.+.-.++
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiata~~lG~-iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~  237 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGA-IVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAEL  237 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHhhcce-EEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHH
Confidence            345567889999999999999999999999 88888888888888888887543211111        122233332232


Q ss_pred             cCC---CccEEEEccCCH------HHHHHHHHHhhcCCceEEEEccCCCCCc-cccCHHHHHhcCcEEEEee
Q 016507          269 TDG---GADYCFECVGLA------SLVQEAYACCRKGWGKTIVLGVDQPGSQ-LSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       269 ~~g---~~dvvid~~g~~------~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~i~g~~  330 (388)
                      ...   ++|+||-+.-.+      .........+++| ..++.+....++.. .+-+-.....++.+|.|..
T Consensus       238 ~a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpG-SViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~  308 (356)
T COG3288         238 VAEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPG-SVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYT  308 (356)
T ss_pred             HHHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCC-cEEEEehhhcCCCcccccCCeEEEeCCeEEEeec
Confidence            222   899999876432      2256888999997 99998876443322 2222222234577787764

>PRK08219 short chain dehydrogenase; Provisional

Probab=93.91  E-value=0.25  Score=43.30  Aligned_cols=72  Identities=15%  Similarity=0.135  Sum_probs=46.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEE--cCCCCCCccHHHHHHhhcCC--CccEE
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFV--NSKNCGDKSVSQIIIDMTDG--GADYC  276 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~--~~~~~~~~~~~~~i~~~~~g--~~dvv  276 (388)
                      .++||+|+ |.+|...+..+... + +|++++++.++.+.+.+ +..-+++  |-.+      .+.+.+...+  +.|++
T Consensus         4 ~~vlVtG~~g~iG~~l~~~l~~~-~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~------~~~~~~~~~~~~~id~v   75 (227)
T PRK08219          4 PTALITGASRGIGAAIARELAPT-H-TLLLGGRPAERLDELAAELPGATPFPVDLTD------PEAIAAAVEQLGRLDVL   75 (227)
T ss_pred             CEEEEecCCcHHHHHHHHHHHhh-C-CEEEEeCCHHHHHHHHHHhccceEEecCCCC------HHHHHHHHHhcCCCCEE
Confidence            57999987 99999888866655 6 89999988776554442 2111222  2222      2233333332  69999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |.+.|.
T Consensus        76 i~~ag~   81 (227)
T PRK08219         76 VHNAGV   81 (227)
T ss_pred             EECCCc
Confidence            999874

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=93.90  E-value=0.28  Score=44.74  Aligned_cols=82  Identities=18%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc------EEEcCCCC-CCccHHHHHHh
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT------EFVNSKNC-GDKSVSQIIID  267 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~------~v~~~~~~-~~~~~~~~i~~  267 (388)
                      -.|..+||+|+ .++|.+++..+-..|+ +|+.+++++++.+...+    .+..      .+.|..+. ....+.+...+
T Consensus         6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            35678899987 9999999999999999 99999999887654432    2221      23333320 01112222222


Q ss_pred             hcCCCccEEEEccCC
Q 016507          268 MTDGGADYCFECVGL  282 (388)
Q Consensus       268 ~~~g~~dvvid~~g~  282 (388)
                      ...|+.|+.++..|.
T Consensus        85 ~~~GkidiLvnnag~   99 (270)
T KOG0725|consen   85 KFFGKIDILVNNAGA   99 (270)
T ss_pred             HhCCCCCEEEEcCCc
Confidence            334579999997764

>PLN02476 O-methyltransferase

Probab=93.89  E-value=0.73  Score=42.04  Aligned_cols=105  Identities=17%  Similarity=0.201  Sum_probs=65.6

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~  267 (388)
                      +....+..+..+||-+|. .+|..++.+|+.++ -.+|+.++.+++..+.+++    .|..+-+.-..   .+..+.+.+
T Consensus       110 L~~L~~~~~ak~VLEIGT-~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~---GdA~e~L~~  185 (278)
T PLN02476        110 LAMLVQILGAERCIEVGV-YTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKH---GLAAESLKS  185 (278)
T ss_pred             HHHHHHhcCCCeEEEecC-CCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHH
Confidence            334556677889999986 33666667777653 2279999999988777754    46543222222   334444444


Q ss_pred             hc----CCCccEEEEccCCH---HHHHHHHHHhhcCCceEEE
Q 016507          268 MT----DGGADYCFECVGLA---SLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       268 ~~----~g~~dvvid~~g~~---~~~~~~~~~l~~~~G~~v~  302 (388)
                      +.    .+.||.||--....   ..++.+++.++++ |.++.
T Consensus       186 l~~~~~~~~FD~VFIDa~K~~Y~~y~e~~l~lL~~G-GvIV~  226 (278)
T PLN02476        186 MIQNGEGSSYDFAFVDADKRMYQDYFELLLQLVRVG-GVIVM  226 (278)
T ss_pred             HHhcccCCCCCEEEECCCHHHHHHHHHHHHHhcCCC-cEEEE
Confidence            32    23799995433322   3377889999996 77664

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=93.88  E-value=0.51  Score=39.15  Aligned_cols=85  Identities=14%  Similarity=0.041  Sum_probs=55.6

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC------cEEEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV------TEFVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga------~~v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      +|.|+|+|..|.+++..+...|. +|....++++..+.+++.+.      ...+...-.-..++.+.+.     +.|+++
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~-~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~-----~ad~Ii   74 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGH-EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALE-----DADIII   74 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTE-EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHT-----T-SEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhC-----cccEEE
Confidence            58899999999999999999997 99999999887776665321      0101000000123444442     789999


Q ss_pred             EccCCHHHHHHHHHHhhc
Q 016507          278 ECVGLASLVQEAYACCRK  295 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~~  295 (388)
                      -++.+.. .+..++.+.+
T Consensus        75 iavPs~~-~~~~~~~l~~   91 (157)
T PF01210_consen   75 IAVPSQA-HREVLEQLAP   91 (157)
T ss_dssp             E-S-GGG-HHHHHHHHTT
T ss_pred             ecccHHH-HHHHHHHHhh
Confidence            9999876 6666666666

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.86  E-value=0.43  Score=49.02  Aligned_cols=78  Identities=17%  Similarity=0.268  Sum_probs=59.6

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      .++|+|.|.|.+|...++.++..|. ++++++.++++.+.+++.|...++-..     .-.+.+++..-..+|.++-+++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GDa-----t~~~~L~~agi~~A~~vvv~~~  473 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKFGMKVFYGDA-----TRMDLLESAGAAKAEVLINAID  473 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhcCCeEEEEeC-----CCHHHHHhcCCCcCCEEEEEeC
Confidence            3689999999999999999999999 899999999999999998876443221     1223343332228999999998


Q ss_pred             CHHH
Q 016507          282 LASL  285 (388)
Q Consensus       282 ~~~~  285 (388)
                      .+..
T Consensus       474 d~~~  477 (621)
T PRK03562        474 DPQT  477 (621)
T ss_pred             CHHH
Confidence            8753

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=93.85  E-value=1.1  Score=38.20  Aligned_cols=99  Identities=17%  Similarity=0.269  Sum_probs=62.6

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i~  266 (388)
                      +.....+.++++||=+|.|. |..++.+++.....+|++++.+++..+.+++    ++...  ++.. +     ....  
T Consensus        23 ~~~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~-d-----~~~~--   93 (187)
T PRK08287         23 ALSKLELHRAKHLIDVGAGT-GSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPG-E-----APIE--   93 (187)
T ss_pred             HHHhcCCCCCCEEEEECCcC-CHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEec-C-----chhh--
Confidence            34556778899999888755 6666666765432399999999987766653    33322  2221 1     1111  


Q ss_pred             hhcCCCccEEEEccC---CHHHHHHHHHHhhcCCceEEEE
Q 016507          267 DMTDGGADYCFECVG---LASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       267 ~~~~g~~dvvid~~g---~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                        ..+.||+|+....   ....+..+.+.|+++ |.++..
T Consensus        94 --~~~~~D~v~~~~~~~~~~~~l~~~~~~Lk~g-G~lv~~  130 (187)
T PRK08287         94 --LPGKADAIFIGGSGGNLTAIIDWSLAHLHPG-GRLVLT  130 (187)
T ss_pred             --cCcCCCEEEECCCccCHHHHHHHHHHhcCCC-eEEEEE
Confidence              1237999986432   123467888999997 988764

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=93.85  E-value=0.86  Score=41.71  Aligned_cols=100  Identities=13%  Similarity=0.141  Sum_probs=65.1

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-CCcE--EEcCCCC-CCccHHHHHHhhcCCCccEEE-
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTE--FVNSKNC-GDKSVSQIIIDMTDGGADYCF-  277 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-ga~~--v~~~~~~-~~~~~~~~i~~~~~g~~dvvi-  277 (388)
                      .+|||+|+|. |-.+-.++++....++++++.+++-.++++++ +...  ..|.+-. -..+-.+.+++... +||+|| 
T Consensus        78 k~VLiiGgGd-G~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~-~fDvIi~  155 (282)
T COG0421          78 KRVLIIGGGD-GGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEE-KFDVIIV  155 (282)
T ss_pred             CeEEEECCCc-cHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCC-cCCEEEE
Confidence            5999997655 66677888888888999999999999988873 2211  0011110 01223344444332 799995 


Q ss_pred             EccCC---------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          278 ECVGL---------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       278 d~~g~---------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      |+...         ..-.+.+-++|+++ |.++.-+.
T Consensus       156 D~tdp~gp~~~Lft~eFy~~~~~~L~~~-Gi~v~q~~  191 (282)
T COG0421         156 DSTDPVGPAEALFTEEFYEGCRRALKED-GIFVAQAG  191 (282)
T ss_pred             cCCCCCCcccccCCHHHHHHHHHhcCCC-cEEEEecC
Confidence            44433         34468899999997 99987743

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=93.84  E-value=0.64  Score=42.50  Aligned_cols=73  Identities=21%  Similarity=0.216  Sum_probs=53.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchH-HHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~-~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +|.++|-|.+|.-.++=+...|+ .|.+.++++++ .++++..|+...-        ...+.+.     ..|+||-|++.
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~~~Ga~~a~--------s~~eaa~-----~aDvVitmv~~   67 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLAAAGATVAA--------SPAEAAA-----EADVVITMLPD   67 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHHHcCCcccC--------CHHHHHH-----hCCEEEEecCC
Confidence            57888999999999988888999 99999999999 8888888875431        1122221     56777777776


Q ss_pred             HHHHHHHH
Q 016507          283 ASLVQEAY  290 (388)
Q Consensus       283 ~~~~~~~~  290 (388)
                      +..+...+
T Consensus        68 ~~~V~~V~   75 (286)
T COG2084          68 DAAVRAVL   75 (286)
T ss_pred             HHHHHHHH
Confidence            65554443

>PRK07775 short chain dehydrogenase; Provisional

Probab=93.83  E-value=0.39  Score=43.77  Aligned_cols=79  Identities=18%  Similarity=0.099  Sum_probs=48.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      ...++||+|+ |.+|..+++.+...|+ +|+++.++.++.+.+    +..+... .  .|-.+  .+.+.+.+.+..  .
T Consensus         9 ~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~   85 (274)
T PRK07775          9 DRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGGEAVAFPLDVTD--PDSVKSFVAQAEEAL   85 (274)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHhc
Confidence            3468999987 9999999998888899 888888766554322    2223322 1  23222  122333333221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      ++.|++|.+.|.
T Consensus        86 ~~id~vi~~Ag~   97 (274)
T PRK07775         86 GEIEVLVSGAGD   97 (274)
T ss_pred             CCCCEEEECCCc
Confidence            378999998874

>PRK06523 short chain dehydrogenase; Provisional

Probab=93.81  E-value=0.26  Score=44.34  Aligned_cols=75  Identities=19%  Similarity=0.205  Sum_probs=46.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhc--CCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMT--DGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~--~g~~dvv  276 (388)
                      ++.+|||+|+ |.+|...++.+...|+ +|++++++++...   .-.+.. ..|-.+  .+...+.+.+..  .+++|++
T Consensus         8 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~---~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~v   81 (260)
T PRK06523          8 AGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSRPDDL---PEGVEFVAADLTT--AEGCAAVARAVLERLGGVDIL   81 (260)
T ss_pred             CCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCChhhhc---CCceeEEecCCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4789999987 9999999998888899 8999988754321   111111 123322  122222222221  1379999


Q ss_pred             EEccC
Q 016507          277 FECVG  281 (388)
Q Consensus       277 id~~g  281 (388)
                      |++.|
T Consensus        82 i~~ag   86 (260)
T PRK06523         82 VHVLG   86 (260)
T ss_pred             EECCc
Confidence            99887

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=93.78  E-value=0.47  Score=42.87  Aligned_cols=94  Identities=22%  Similarity=0.257  Sum_probs=60.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCc---EEEcCCCCCCccHHHHHHhhcCCC
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~---~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      .++.+||-+|.|. |..+..+++. |. +|++++.+++..+.+++.    |..   .++..      +.. .+.....+.
T Consensus        43 ~~~~~vLDiGcG~-G~~a~~la~~-g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~------d~~-~l~~~~~~~  112 (255)
T PRK11036         43 PRPLRVLDAGGGE-GQTAIKLAEL-GH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHC------AAQ-DIAQHLETP  112 (255)
T ss_pred             CCCCEEEEeCCCc-hHHHHHHHHc-CC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEc------CHH-HHhhhcCCC
Confidence            4567888888755 6777777775 77 999999999888777653    321   12221      121 122222348


Q ss_pred             ccEEEEccC-----C-HHHHHHHHHHhhcCCceEEEEc
Q 016507          273 ADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       273 ~dvvid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ||+|+....     . ...+..+.+.|+++ |.++.+-
T Consensus       113 fD~V~~~~vl~~~~~~~~~l~~~~~~Lkpg-G~l~i~~  149 (255)
T PRK11036        113 VDLILFHAVLEWVADPKSVLQTLWSVLRPG-GALSLMF  149 (255)
T ss_pred             CCEEEehhHHHhhCCHHHHHHHHHHHcCCC-eEEEEEE
Confidence            999985422     2 23478899999997 9987653

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.75  E-value=0.74  Score=43.81  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=32.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .+.+|||+|+|++|..+++.+...|..++..+|.+.
T Consensus        27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            347899999999999999999999999999998765

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=93.74  E-value=0.43  Score=44.26  Aligned_cols=75  Identities=20%  Similarity=0.200  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH---HHHHHcC-Cc---EEEcCCCCCCccHHHHHHhhcCCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF---EIGKRFG-VT---EFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~---~~~~~lg-a~---~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      .+.+|+|+|| |-||...+..+-..|+ +|.++.|+++..   +.++++. +.   .++..+=.+...|.+.+.     |
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY-~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~-----g   78 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGY-TVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAID-----G   78 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCC-EEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHh-----C
Confidence            5679999998 9999999999999999 999999988763   3466664 22   233222111233444432     7


Q ss_pred             ccEEEEccC
Q 016507          273 ADYCFECVG  281 (388)
Q Consensus       273 ~dvvid~~g  281 (388)
                      .|.||.+..
T Consensus        79 cdgVfH~As   87 (327)
T KOG1502|consen   79 CDGVFHTAS   87 (327)
T ss_pred             CCEEEEeCc
Confidence            899998765

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=93.73  E-value=0.24  Score=39.46  Aligned_cols=78  Identities=21%  Similarity=0.282  Sum_probs=49.2

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEc-CCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVD-VISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~-~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      -+|-|+|+|.+|......++..|+ .|..+. ++.++.+.+.. ++...+.+..+            .. ...|++|-++
T Consensus        11 l~I~iIGaGrVG~~La~aL~~ag~-~v~~v~srs~~sa~~a~~~~~~~~~~~~~~------------~~-~~aDlv~iav   76 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARAGH-EVVGVYSRSPASAERAAAFIGAGAILDLEE------------IL-RDADLVFIAV   76 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHTTS-EEEEESSCHH-HHHHHHC--TT-----TTG------------GG-CC-SEEEE-S
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCC-eEEEEEeCCccccccccccccccccccccc------------cc-ccCCEEEEEe
Confidence            479999999999999999999998 777764 45555555554 34433332211            11 2789999999


Q ss_pred             CCHHHHHHHHHHhhc
Q 016507          281 GLASLVQEAYACCRK  295 (388)
Q Consensus       281 g~~~~~~~~~~~l~~  295 (388)
                      ..+. +....+.|..
T Consensus        77 pDda-I~~va~~La~   90 (127)
T PF10727_consen   77 PDDA-IAEVAEQLAQ   90 (127)
T ss_dssp             -CCH-HHHHHHHHHC
T ss_pred             chHH-HHHHHHHHHH
Confidence            9886 7777777765

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06701 short chain dehydrogenase; Provisional

Probab=93.72  E-value=0.41  Score=44.15  Aligned_cols=82  Identities=20%  Similarity=0.111  Sum_probs=48.8

Q ss_pred             CCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-HH----HHHHcCCcE-E--EcCCCCCCccHHHHHHhh
Q 016507          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE----IGKRFGVTE-F--VNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       198 ~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-~~----~~~~lga~~-v--~~~~~~~~~~~~~~i~~~  268 (388)
                      ...++.++||+|+ |.+|...+..+...|+ +|+.+.++++. .+    .++..+... +  .|-.+  ...+.+.+.+.
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~i  118 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSD--EAFCKDAVEET  118 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHH
Confidence            3445788999997 9999998888887899 88888776432 21    222223322 2  23222  12222222222


Q ss_pred             c--CCCccEEEEccCC
Q 016507          269 T--DGGADYCFECVGL  282 (388)
Q Consensus       269 ~--~g~~dvvid~~g~  282 (388)
                      .  .+++|++|.+.|.
T Consensus       119 ~~~~~~iD~lI~~Ag~  134 (290)
T PRK06701        119 VRELGRLDILVNNAAF  134 (290)
T ss_pred             HHHcCCCCEEEECCcc
Confidence            1  1378999998774

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=93.71  E-value=0.45  Score=44.54  Aligned_cols=89  Identities=22%  Similarity=0.237  Sum_probs=60.5

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      ..|.++.|+|.|.||.+.++.++..|+ +|+..++++. .+..+..++.++        . +.+.+.     ..|++.-.
T Consensus       144 l~gktvGIiG~GrIG~avA~r~~~Fgm-~v~y~~~~~~-~~~~~~~~~~y~--------~-l~ell~-----~sDii~l~  207 (324)
T COG1052         144 LRGKTLGIIGLGRIGQAVARRLKGFGM-KVLYYDRSPN-PEAEKELGARYV--------D-LDELLA-----ESDIISLH  207 (324)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCCC-hHHHhhcCceec--------c-HHHHHH-----hCCEEEEe
Confidence            358999999999999999999999999 9999988775 344344444432        1 333332     56777554


Q ss_pred             cC-CHHH----HHHHHHHhhcCCceEEEEcc
Q 016507          280 VG-LASL----VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       280 ~g-~~~~----~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .+ ++.+    -...++.|+++ +.+|.++.
T Consensus       208 ~Plt~~T~hLin~~~l~~mk~g-a~lVNtaR  237 (324)
T COG1052         208 CPLTPETRHLINAEELAKMKPG-AILVNTAR  237 (324)
T ss_pred             CCCChHHhhhcCHHHHHhCCCC-eEEEECCC
Confidence            44 3321    14667788886 77777764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.70  E-value=0.38  Score=47.41  Aligned_cols=71  Identities=25%  Similarity=0.342  Sum_probs=48.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch-HH----HHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KF----EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~-~~----~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      .+.+|+|+|+|.+|+.++..+...|+ +|++++..+. ..    +.+.++|...... +.   .+   ..    .+++|+
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~-~~---~~---~~----~~~~d~   71 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELGIELVLG-EY---PE---EF----LEGVDL   71 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCEEEeC-Cc---ch---hH----hhcCCE
Confidence            46889999998899999999999999 8999988642 11    3344556653322 21   11   11    137999


Q ss_pred             EEEccCCH
Q 016507          276 CFECVGLA  283 (388)
Q Consensus       276 vid~~g~~  283 (388)
                      |+.+.|..
T Consensus        72 vv~~~g~~   79 (450)
T PRK14106         72 VVVSPGVP   79 (450)
T ss_pred             EEECCCCC
Confidence            99988854

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.68  E-value=0.75  Score=42.37  Aligned_cols=95  Identities=18%  Similarity=0.261  Sum_probs=67.0

Q ss_pred             ccccchhhhhHHHHHHhcCC-CCCCEEEEEc-cchhHHHHHHHHHHcCCcEEEEEc-CCchHHHHHHHcCCcEEEcCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTANV-EVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVD-VISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~-~~~~~VlI~G-ag~vG~~ai~la~~~g~~~Vi~~~-~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      ..+||+....+. +.+..++ -.|.+|+|+| .+.+|.-++.++...|+ .|++.. ++.                    
T Consensus       136 ~~~PcTp~ai~~-ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~-tVtv~~~rT~--------------------  193 (296)
T PRK14188        136 ALVPCTPLGCMM-LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANA-TVTIAHSRTR--------------------  193 (296)
T ss_pred             CCcCCCHHHHHH-HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCC-EEEEECCCCC--------------------
Confidence            356666555555 3444444 4799999999 59999999999988899 888874 221                    


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCC
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                         ++.+.++     ..|+|+-++|.+..+...+  ++++ ..++.+|...
T Consensus       194 ---~l~e~~~-----~ADIVIsavg~~~~v~~~~--lk~G-avVIDvGin~  233 (296)
T PRK14188        194 ---DLPAVCR-----RADILVAAVGRPEMVKGDW--IKPG-ATVIDVGINR  233 (296)
T ss_pred             ---CHHHHHh-----cCCEEEEecCChhhcchhe--ecCC-CEEEEcCCcc
Confidence               1222221     6799999999988565554  8887 8888998643

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=93.66  E-value=1.1  Score=39.22  Aligned_cols=104  Identities=20%  Similarity=0.236  Sum_probs=62.1

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEEE------cC-CCCCCccHHHHHHhhc-
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFV------NS-KNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v~------~~-~~~~~~~~~~~i~~~~-  269 (388)
                      ..++.+||+.|.|. |.-++-+|. .|+ .|++++.++.-.+.+. +.+.....      .. ......-....+.++. 
T Consensus        32 ~~~~~rvLd~GCG~-G~da~~LA~-~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~  108 (213)
T TIGR03840        32 LPAGARVFVPLCGK-SLDLAWLAE-QGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTA  108 (213)
T ss_pred             CCCCCeEEEeCCCc-hhHHHHHHh-CCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCc
Confidence            35778999998765 777777775 699 9999999998777642 23321100      00 0000000000011111 


Q ss_pred             --CCCccEEEEccCC--------HHHHHHHHHHhhcCCceEEEEccC
Q 016507          270 --DGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       270 --~g~~dvvid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                        .+.||.|+|+..-        ...+..+.++|+++ |+++.++..
T Consensus       109 ~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpg-G~~ll~~~~  154 (213)
T TIGR03840       109 ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPG-ARQLLITLD  154 (213)
T ss_pred             ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCC-CeEEEEEEE
Confidence              1369999997541        22377899999998 987776653

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.66  E-value=0.37  Score=43.64  Aligned_cols=79  Identities=20%  Similarity=0.364  Sum_probs=47.2

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHcCCcEEEEEcCC---chHHHH-HHHcCCcEE--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVI---SEKFEI-GKRFGVTEF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga---g~vG~~ai~la~~~g~~~Vi~~~~~---~~~~~~-~~~lga~~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+   +++|.+.++.+...|+ +|+.+.+.   +++.+. .++++....  .|-.+  .++..+.+.+... 
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~   81 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVAS--DEQIDALFASLGQH   81 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccchHHHHHHHHHHHhcCCcceeeccCCC--HHHHHHHHHHHHHH
Confidence            4688999984   5899998888888899 88877543   233322 233443222  23332  2333333333322 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       |++|+++++.|.
T Consensus        82 ~g~iD~lvnnAG~   94 (260)
T PRK06997         82 WDGLDGLVHSIGF   94 (260)
T ss_pred             hCCCcEEEEcccc
Confidence             479999998763

>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional

Probab=93.65  E-value=0.52  Score=44.90  Aligned_cols=100  Identities=22%  Similarity=0.249  Sum_probs=62.9

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHc--CCcEEEEEc--CCchHH-HHHHHcCCcEEEcCCCCCCccHH--------------
Q 016507          203 STVVIFGL-GSIGLAVAEGARLC--GATRIIGVD--VISEKF-EIGKRFGVTEFVNSKNCGDKSVS--------------  262 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~--g~~~Vi~~~--~~~~~~-~~~~~lga~~v~~~~~~~~~~~~--------------  262 (388)
                      .+|.|+|+ |++|..++.+.+..  .+ +|+++.  ++.+++ +.+++++...+.-.++.....+.              
T Consensus         2 k~VaILGsTGSIG~~tL~vi~~~p~~f-~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~   80 (385)
T PRK05447          2 KRITILGSTGSIGTQTLDVIRRNPDRF-RVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLAGE   80 (385)
T ss_pred             ceEEEEcCChHHHHHHHHHHHhCcccc-EEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEECh
Confidence            47899997 99999999988754  45 777774  333333 34556777765543320001111              


Q ss_pred             HHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          263 QIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       263 ~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.+.++... .+|+|+.++++..++...+..++.  |+-+.+++
T Consensus        81 ~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~a--GK~VaLAN  122 (385)
T PRK05447         81 EGLCELAALPEADVVVAAIVGAAGLLPTLAAIRA--GKRIALAN  122 (385)
T ss_pred             hHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHC--CCcEEEeC
Confidence            112222222 689999999988778888888887  55565644

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=93.65  E-value=2.8  Score=37.63  Aligned_cols=98  Identities=13%  Similarity=0.215  Sum_probs=62.4

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC-cEEEcCCCCCCccHHHHHHhhcCCCc
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +.....++.+||-+|.|. |..+..+++ .|. +|++++.+++..+.+++... ..++..+-   ..+     .+..+.|
T Consensus        36 ~~l~~~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~~D~s~~~l~~a~~~~~~~~~~~~d~---~~~-----~~~~~~f  104 (251)
T PRK10258         36 AMLPQRKFTHVLDAGCGP-GWMSRYWRE-RGS-QVTALDLSPPMLAQARQKDAADHYLAGDI---ESL-----PLATATF  104 (251)
T ss_pred             HhcCccCCCeEEEeeCCC-CHHHHHHHH-cCC-eEEEEECCHHHHHHHHhhCCCCCEEEcCc---ccC-----cCCCCcE
Confidence            334444678899998765 666655654 466 99999999998888876532 12221111   111     1122379


Q ss_pred             cEEEEccCC------HHHHHHHHHHhhcCCceEEEEc
Q 016507          274 DYCFECVGL------ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       274 dvvid~~g~------~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      |+|+....-      ...+.++.+.++++ |.++...
T Consensus       105 D~V~s~~~l~~~~d~~~~l~~~~~~Lk~g-G~l~~~~  140 (251)
T PRK10258        105 DLAWSNLAVQWCGNLSTALRELYRVVRPG-GVVAFTT  140 (251)
T ss_pred             EEEEECchhhhcCCHHHHHHHHHHHcCCC-eEEEEEe
Confidence            999865431      23478889999997 9888664

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=93.63  E-value=0.68  Score=43.37  Aligned_cols=99  Identities=19%  Similarity=0.268  Sum_probs=59.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcC----CcEEEEEcC--CchHHHHHHHcCCc--------------EEEcCCCCCCccH-H
Q 016507          204 TVVIFGLGSIGLAVAEGARLCG----ATRIIGVDV--ISEKFEIGKRFGVT--------------EFVNSKNCGDKSV-S  262 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g----~~~Vi~~~~--~~~~~~~~~~lga~--------------~v~~~~~~~~~~~-~  262 (388)
                      +|.|+|+|.+|..+++.+...+    . +|+++..  +.+...++.++.-.              .+++-+.  ..-+ .
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~-~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~--i~v~~~   77 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGI-EVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDC--IRVLHS   77 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCe-EEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeE--EEEEEc
Confidence            4789999999999999877543    5 6666633  22333444333210              0111100  0000 0


Q ss_pred             HHHHhhcC--CCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          263 QIIIDMTD--GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       263 ~~i~~~~~--g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ....++..  .++|+||+|+|.....+.+...+..| +..+.++..
T Consensus        78 ~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aG-a~~V~~SaP  122 (325)
T TIGR01532        78 PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAG-AKRVLFSHP  122 (325)
T ss_pred             CChhhccccccCCCEEEEccchhccHHHHHHHHHcC-CeEEEecCC
Confidence            01111222  28999999999988788888999987 888888764

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=93.63  E-value=0.67  Score=42.81  Aligned_cols=57  Identities=21%  Similarity=0.183  Sum_probs=46.8

Q ss_pred             HHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC---chHHHHHHHcCCcEEE
Q 016507          194 WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI---SEKFEIGKRFGVTEFV  251 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~---~~~~~~~~~lga~~v~  251 (388)
                      .....+.||.++||-.. |.+|...+.++...|+ +++++...   .+|...++.+|+..+.
T Consensus        95 e~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gy-k~i~tmP~~ms~Ek~~~l~a~Gaeii~  155 (362)
T KOG1252|consen   95 EKKGLITPGKSTLIEPTSGNTGIGLAYMAALRGY-KCIITMPEKMSKEKRILLRALGAEIIL  155 (362)
T ss_pred             HHcCCccCCceEEEecCCCchHHHHHHHHHHcCc-eEEEEechhhhHHHHHHHHHcCCEEEe
Confidence            45567899999999985 9999999999999999 88887553   3778888889987554

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=93.58  E-value=0.27  Score=45.51  Aligned_cols=95  Identities=14%  Similarity=0.119  Sum_probs=57.5

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC-CccHHHHHHhhcCCCccEEEEccCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG-DKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~-~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +|+|+|+|.+|.+.+..+...|. +|..+++++++.+.+++.|...  +..+.. .........+.  +.+|+||-|+..
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~--~~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRL--EDGEITVPVLAADDPAEL--GPQDLVILAVKA   76 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcc--cCCceeecccCCCChhHc--CCCCEEEEeccc
Confidence            58999999999988888777787 8999998777777776656421  100000 00000001111  379999999886


Q ss_pred             HHHHHHHHHHhhc---CCceEEEEc
Q 016507          283 ASLVQEAYACCRK---GWGKTIVLG  304 (388)
Q Consensus       283 ~~~~~~~~~~l~~---~~G~~v~~g  304 (388)
                      .. +..+++.+.+   ....++.+.
T Consensus        77 ~~-~~~~~~~l~~~l~~~~~iv~~~  100 (304)
T PRK06522         77 YQ-LPAALPSLAPLLGPDTPVLFLQ  100 (304)
T ss_pred             cc-HHHHHHHHhhhcCCCCEEEEec
Confidence            65 4555554443   114555544

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=93.56  E-value=1  Score=42.28  Aligned_cols=94  Identities=19%  Similarity=0.136  Sum_probs=62.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HcCCcEEEEEcCCchHHHHH-HHc----CCcEEEcCCCCCCccHHHHHHhhcCCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG-KRF----GVTEFVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~-~~g~~~Vi~~~~~~~~~~~~-~~l----ga~~v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +...+++|+|+|..|.+.+..+. ..+.++|.+..++.++.+.+ +.+    |.. +...     .+..+.+.     +.
T Consensus       127 ~~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~-v~~~-----~~~~~av~-----~a  195 (326)
T TIGR02992       127 EDSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGID-VTAA-----TDPRAAMS-----GA  195 (326)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCce-EEEe-----CCHHHHhc-----cC
Confidence            34568999999999988777665 57877999999998876543 333    432 2211     22333332     78


Q ss_pred             cEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          274 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       274 dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      |+|+.|+++...+ -..+.++++ -++..+|..
T Consensus       196 DiVvtaT~s~~p~-i~~~~l~~g-~~i~~vg~~  226 (326)
T TIGR02992       196 DIIVTTTPSETPI-LHAEWLEPG-QHVTAMGSD  226 (326)
T ss_pred             CEEEEecCCCCcE-ecHHHcCCC-cEEEeeCCC
Confidence            9999999875421 123457776 777778753

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=93.55  E-value=0.43  Score=42.36  Aligned_cols=78  Identities=23%  Similarity=0.347  Sum_probs=47.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE-cCCchHHHHHHH----cCCcE-EE--cCCCCCCccHHHHHHhhcC--
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIGKR----FGVTE-FV--NSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~~~~~~~~~~~~----lga~~-v~--~~~~~~~~~~~~~i~~~~~--  270 (388)
                      +.++||+|+ |.+|...+..+...|+ +|+++ ++++++.+.+..    .+... ++  |-.+  ...+.+.+.+...  
T Consensus         5 ~~~ilI~Gasg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (247)
T PRK05565          5 GKVAIVTGASGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSS--EEDVENLVEQIVEKF   81 (247)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            468999987 9999998888777899 78887 877665433222    22211 22  3222  1222222222211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|.+.|.
T Consensus        82 ~~id~vi~~ag~   93 (247)
T PRK05565         82 GKIDILVNNAGI   93 (247)
T ss_pred             CCCCEEEECCCc
Confidence            379999998874

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=93.54  E-value=0.48  Score=42.00  Aligned_cols=79  Identities=25%  Similarity=0.321  Sum_probs=47.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch-HHH-H---HHHcCCcE-EE--cCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KFE-I---GKRFGVTE-FV--NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~-~~~-~---~~~lga~~-v~--~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|...+..+...|+ +|+++.++.. +.+ .   ++..+... .+  |-.+  ...+.+.+.+... 
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   80 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGA-NVVINYASSEAGAEALVAEIGALGGKALAVQGDVSD--AESVERAVDEAKAE   80 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            3568999987 9999999999888899 7766655443 222 1   22223222 22  3333  1223333333222 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|+++.+.|.
T Consensus        81 ~~~id~vi~~ag~   93 (248)
T PRK05557         81 FGGVDILVNNAGI   93 (248)
T ss_pred             cCCCCEEEECCCc
Confidence             278999998874

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=93.54  E-value=1.4  Score=43.10  Aligned_cols=103  Identities=18%  Similarity=0.263  Sum_probs=64.8

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHHHh
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i~~  267 (388)
                      ...++++|++||=.|+|+ |..++.++..++ -.+|++++.++++++.+++    +|.+.  ++..+.   ..+    ..
T Consensus       231 ~~l~~~~g~~VLD~cagp-Ggkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da---~~l----~~  302 (431)
T PRK14903        231 LLMELEPGLRVLDTCAAP-GGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADA---ERL----TE  302 (431)
T ss_pred             HHhCCCCCCEEEEeCCCc-cHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECch---hhh----hh
Confidence            346788999988888755 444555566552 2389999999999877754    56643  222211   112    11


Q ss_pred             hcCCCccEEEE---ccCCH-------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          268 MTDGGADYCFE---CVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       268 ~~~g~~dvvid---~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ...+.||.|+-   |+|..                         ..+..+++.++++ |.++....+
T Consensus       303 ~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpG-G~LvYsTCs  368 (431)
T PRK14903        303 YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKG-GILLYSTCT  368 (431)
T ss_pred             hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCC-CEEEEEECC
Confidence            22347999974   54431                         1256788999997 987766543

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=93.53  E-value=0.63  Score=43.75  Aligned_cols=95  Identities=14%  Similarity=0.076  Sum_probs=62.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HcCCcEEEEEcCCchHHHHH-H---HcCCcEEEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG-K---RFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~-~~g~~~Vi~~~~~~~~~~~~-~---~lga~~v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      +...++.|+|+|..|.+.++.+. ....++|.+.++++++.+.+ .   ++|..... .     .+..+.+     .+.|
T Consensus       126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~-~-----~~~~eav-----~~aD  194 (325)
T TIGR02371       126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRA-A-----TDPREAV-----EGCD  194 (325)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEE-e-----CCHHHHh-----ccCC
Confidence            44578999999999988665544 45667999999998886543 2   33432111 1     1233333     2789


Q ss_pred             EEEEccCCHHHHHHHHHHhhcCCceEEEEccCC
Q 016507          275 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       275 vvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      +|+-|+++...+ -..+.++++ -+++.+|...
T Consensus       195 iVitaT~s~~P~-~~~~~l~~g-~~v~~vGs~~  225 (325)
T TIGR02371       195 ILVTTTPSRKPV-VKADWVSEG-THINAIGADA  225 (325)
T ss_pred             EEEEecCCCCcE-ecHHHcCCC-CEEEecCCCC
Confidence            999988765412 234567887 8888998753

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.52  E-value=0.44  Score=42.55  Aligned_cols=79  Identities=16%  Similarity=0.158  Sum_probs=47.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEE-EcCCchHHHH----HHHcCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEI----GKRFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~-~~~~~~~~~~----~~~lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      ++.++||+|+ |.+|...+..+...|+ +|++ ..+++++.+.    ++..+... .  .|-.+  .+++...+.+... 
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGY-DIAVNYARSRKAAEETAEEIEALGRKALAVKANVGD--VEKIKEMFAQIDEE   79 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 6665 4555554332    22234322 2  23222  1233333333221 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        80 ~~~id~vi~~ag~   92 (250)
T PRK08063         80 FGRLDVFVNNAAS   92 (250)
T ss_pred             cCCCCEEEECCCC
Confidence             378999998873

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=93.50  E-value=0.44  Score=46.11  Aligned_cols=74  Identities=19%  Similarity=0.288  Sum_probs=47.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcC--CcE-EEcCCCCCCccHHHHHHhhcCCCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG--VTE-FVNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lg--a~~-v~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      .+.+|+|+|+ |.+|.+.++.+...|+ +|+++++++++.+... ..+  ... ..|-.+   .   +.+.+.. +++|+
T Consensus       177 ~gK~VLITGASgGIG~aLA~~La~~G~-~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd---~---~~v~~~l-~~IDi  248 (406)
T PRK07424        177 KGKTVAVTGASGTLGQALLKELHQQGA-KVVALTSNSDKITLEINGEDLPVKTLHWQVGQ---E---AALAELL-EKVDI  248 (406)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCC---H---HHHHHHh-CCCCE
Confidence            4679999987 9999999998888899 8999888766543221 111  111 123332   1   2233322 37999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      +|.+.|.
T Consensus       249 LInnAGi  255 (406)
T PRK07424        249 LIINHGI  255 (406)
T ss_pred             EEECCCc
Confidence            9988763

>PRK04266 fibrillarin; Provisional

Probab=93.47  E-value=1.7  Score=38.52  Aligned_cols=101  Identities=13%  Similarity=0.188  Sum_probs=61.1

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-----CCcEEEcCCCCCCccHHHHHHhhc
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----GVTEFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-----ga~~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      +...+++|++||=+|+|+ |..+..+++..+-.+|++++.+++.++.+.+.     .+. .+..+.   ... .....+ 
T Consensus        66 ~~l~i~~g~~VlD~G~G~-G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~-~i~~D~---~~~-~~~~~l-  138 (226)
T PRK04266         66 KNFPIKKGSKVLYLGAAS-GTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNII-PILADA---RKP-ERYAHV-  138 (226)
T ss_pred             hhCCCCCCCEEEEEccCC-CHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcE-EEECCC---CCc-chhhhc-
Confidence            457889999999988754 44556667665433899999999766644322     122 221111   110 000011 


Q ss_pred             CCCccEEEEccCCHH----HHHHHHHHhhcCCceEEEE
Q 016507          270 DGGADYCFECVGLAS----LVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       270 ~g~~dvvid~~g~~~----~~~~~~~~l~~~~G~~v~~  303 (388)
                      .+.+|+|+.-...+.    .+..+.+.|+++ |+++..
T Consensus       139 ~~~~D~i~~d~~~p~~~~~~L~~~~r~LKpG-G~lvI~  175 (226)
T PRK04266        139 VEKVDVIYQDVAQPNQAEIAIDNAEFFLKDG-GYLLLA  175 (226)
T ss_pred             cccCCEEEECCCChhHHHHHHHHHHHhcCCC-cEEEEE
Confidence            126999996544331    257888899998 998874

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.47  E-value=0.54  Score=48.14  Aligned_cols=95  Identities=9%  Similarity=0.081  Sum_probs=67.1

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +.|+|.|.|.+|...++.++..|. ++++++.++++.+.+++.|...++-.     ..-.+.+++..-..+|.++-+++.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~g~~v~~GD-----at~~~~L~~agi~~A~~vv~~~~d  474 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKYGYKVYYGD-----ATQLELLRAAGAEKAEAIVITCNE  474 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhCCCeEEEee-----CCCHHHHHhcCCccCCEEEEEeCC
Confidence            579999999999999999999999 89999999999999999887654421     112333444322289999999998


Q ss_pred             HHHHHHH---HHHhhcCCceEEEEc
Q 016507          283 ASLVQEA---YACCRKGWGKTIVLG  304 (388)
Q Consensus       283 ~~~~~~~---~~~l~~~~G~~v~~g  304 (388)
                      +..-...   .+...+. .+++.-.
T Consensus       475 ~~~n~~i~~~~r~~~p~-~~IiaRa  498 (601)
T PRK03659        475 PEDTMKIVELCQQHFPH-LHILARA  498 (601)
T ss_pred             HHHHHHHHHHHHHHCCC-CeEEEEe
Confidence            7633333   3334443 5555443

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=93.43  E-value=0.54  Score=43.95  Aligned_cols=38  Identities=18%  Similarity=0.053  Sum_probs=31.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      .|.+|||+|+ |.+|...+..+...|+ +|+++.++.++.
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~   42 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGY-TVKATVRDLTDR   42 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCCcch
Confidence            4679999987 9999999998888899 888877766543

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=93.42  E-value=0.3  Score=46.19  Aligned_cols=34  Identities=26%  Similarity=0.196  Sum_probs=29.5

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      .+|||+|+ |.+|..+++.+...|+ +|+++++..+
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~~   35 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRRSS   35 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecCCc
Confidence            37999987 9999999999988999 8999987653

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=93.41  E-value=0.3  Score=45.45  Aligned_cols=94  Identities=18%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhc---CCCccEEEEc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMT---DGGADYCFEC  279 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~---~g~~dvvid~  279 (388)
                      +|+|+|+|++|....-.+...|. .|..+++.+++.+.+++ -|.. +.+...   .... .+...+   .+.+|+||-|
T Consensus         4 ~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~-i~~~g~---~~~~-~~~~~~~~~~~~~D~viv~   77 (305)
T PRK05708          4 TWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLT-LVEQGQ---ASLY-AIPAETADAAEPIHRLLLA   77 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeE-EeeCCc---ceee-ccCCCCcccccccCEEEEE
Confidence            69999999999877776667788 89999998777776654 3432 222111   0000 000001   1278999988


Q ss_pred             cCCHHHHHHHH----HHhhcCCceEEEEcc
Q 016507          280 VGLASLVQEAY----ACCRKGWGKTIVLGV  305 (388)
Q Consensus       280 ~g~~~~~~~~~----~~l~~~~G~~v~~g~  305 (388)
                      +=+.. ...++    ..+.++ ..++.+.+
T Consensus        78 vK~~~-~~~al~~l~~~l~~~-t~vv~lQN  105 (305)
T PRK05708         78 CKAYD-AEPAVASLAHRLAPG-AELLLLQN  105 (305)
T ss_pred             CCHHh-HHHHHHHHHhhCCCC-CEEEEEeC
Confidence            75543 33444    344554 66665543

>PRK13984 putative oxidoreductase; Provisional

Probab=93.40  E-value=0.37  Score=49.45  Aligned_cols=78  Identities=21%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch---------------------HHHHHHHcCCcEEEcCCCCC
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSKNCG  257 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~---------------------~~~~~~~lga~~v~~~~~~~  257 (388)
                      .+.+++|+|+|+|+.|+.++..++..|+ +|+++++.+.                     ..+.++++|++..++..-..
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~-~v~vie~~~~~gG~~~~~i~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~  358 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGY-EVTVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHLNTRVGK  358 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEecCCCCCceEeecCCcccCCHHHHHHHHHHHHHCCcEEECCCEeCC
Confidence            4568899999999999999999999999 8888865431                     23556677877655533100


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +..+ +.++    .+||.||-++|.
T Consensus       359 ~~~~-~~~~----~~yD~vilAtGa  378 (604)
T PRK13984        359 DIPL-EELR----EKHDAVFLSTGF  378 (604)
T ss_pred             cCCH-HHHH----hcCCEEEEEcCc
Confidence            0112 2221    279999999985

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=93.36  E-value=0.28  Score=44.41  Aligned_cols=76  Identities=17%  Similarity=0.278  Sum_probs=48.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhcC--CCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~~--g~~dvv  276 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+.+++++++.+.   ..+.. ..|-.+  .+.+.+.+.+...  +++|++
T Consensus         8 ~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~---~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~id~l   81 (266)
T PRK06171          8 QGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIHGGDGQH---ENYQFVPTDVSS--AEEVNHTVAEIIEKFGRIDGL   81 (266)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcccccc---CceEEEEccCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4678999987 9999999999888999 89888877654321   11111 223333  1233333333221  378999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      +++.|.
T Consensus        82 i~~Ag~   87 (266)
T PRK06171         82 VNNAGI   87 (266)
T ss_pred             EECCcc
Confidence            998873

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=93.35  E-value=0.28  Score=43.68  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=46.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEc-CCch-HHHHHH---HcCCcEE---EcCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISE-KFEIGK---RFGVTEF---VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~-~~~~-~~~~~~---~lga~~v---~~~~~~~~~~~~~~i~~~~--  269 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|++.. +++. ..+.+.   ..+....   .|-.+  .+++.+.+.+..  
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   78 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGF-KVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGD--WDSTKAAFDKVKAE   78 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            3578899987 9999999999988899 676643 3332 222232   3344332   23332  122333232221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .++.|+++++.|.
T Consensus        79 ~~~id~li~~ag~   91 (246)
T PRK12938         79 VGEIDVLVNNAGI   91 (246)
T ss_pred             hCCCCEEEECCCC
Confidence            1379999999975

>PRK08655 prephenate dehydrogenase; Provisional

Probab=93.35  E-value=0.72  Score=45.23  Aligned_cols=43  Identities=28%  Similarity=0.327  Sum_probs=35.3

Q ss_pred             EEEEEc-cchhHHHHHHHHHHcCCcEEEEEcCCchHH-HHHHHcCC
Q 016507          204 TVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKF-EIGKRFGV  247 (388)
Q Consensus       204 ~VlI~G-ag~vG~~ai~la~~~g~~~Vi~~~~~~~~~-~~~~~lga  247 (388)
                      +|+|+| .|.+|.+.+..++..|. +|+++++++++. +.+.++|+
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~~~~~~~a~~~gv   46 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDPKKGKEVAKELGV   46 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHcCC
Confidence            688998 59999999999999998 899999887764 55666665

>PRK09135 pteridine reductase; Provisional

Probab=93.33  E-value=0.51  Score=41.94  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=29.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|++++++.
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~   40 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRS   40 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCC
Confidence            4578999997 9999999888888899 899888753

>PLN02735 carbamoyl-phosphate synthase

Probab=93.31  E-value=1.2  Score=48.82  Aligned_cols=97  Identities=12%  Similarity=0.141  Sum_probs=57.3

Q ss_pred             hhhhHHHHHHhcCCCCCCEEEEEccchh-----------HHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cC
Q 016507          186 VSTGVGAAWRTANVEVGSTVVIFGLGSI-----------GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NS  253 (388)
Q Consensus       186 ~~ta~~~l~~~~~~~~~~~VlI~Gag~v-----------G~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~  253 (388)
                      ...||.+.....+-..-.+|||+|+|++           |..++..++..|+ +|+.+++++........+ +|+++ .+
T Consensus         7 ~~~~~~~~~~~~~~~~~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~-~Vi~vd~np~t~~~~~~~-aD~~yi~p   84 (1102)
T PLN02735          7 VTRAWSAATKAGKRTDLKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGY-EVVLINSNPATIMTDPET-ADRTYIAP   84 (1102)
T ss_pred             ceecccccccCCcccCCCEEEEECCCccccccceeecchHHHHHHHHHHcCC-EEEEEeCCcccccCChhh-CcEEEeCC
Confidence            3445654432222222369999998874           5568888899999 999999877532211112 44433 22


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHH
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAY  290 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~  290 (388)
                      .+   .+   .+.++... ++|.|+-+.|+...+..+.
T Consensus        85 ~~---~e---~v~~ii~~e~~D~Iip~~gg~~gl~la~  116 (1102)
T PLN02735         85 MT---PE---LVEQVIAKERPDALLPTMGGQTALNLAV  116 (1102)
T ss_pred             CC---HH---HHHHHHHHhCCCEEEECCCchhhHHHHH
Confidence            22   22   23332223 8999999998876554443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=93.31  E-value=0.67  Score=44.34  Aligned_cols=36  Identities=19%  Similarity=0.319  Sum_probs=31.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .+.+|+|+|+|++|..+++.+...|..+++.+|.+.
T Consensus        40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            456899999999999999999999998999998763

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=93.31  E-value=0.28  Score=44.24  Aligned_cols=73  Identities=15%  Similarity=0.084  Sum_probs=50.6

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL  282 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~  282 (388)
                      +|||.|+.+-|..++..+...|. +|+++..++.+.+.+...|...+.--.- +..+    +.++... ++|+|+|++-.
T Consensus         2 ~ILvlGGT~egr~la~~L~~~g~-~v~~s~~t~~~~~~~~~~g~~~v~~g~l-~~~~----l~~~l~~~~i~~VIDAtHP   75 (256)
T TIGR00715         2 TVLLMGGTVDSRAIAKGLIAQGI-EILVTVTTSEGKHLYPIHQALTVHTGAL-DPQE----LREFLKRHSIDILVDATHP   75 (256)
T ss_pred             eEEEEechHHHHHHHHHHHhCCC-eEEEEEccCCccccccccCCceEEECCC-CHHH----HHHHHHhcCCCEEEEcCCH
Confidence            68999884459888877777898 8999999888877777776555542211 1122    3333333 89999998763

This enzyme was found to be a monomer by gel filtration.

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=93.28  E-value=0.57  Score=42.25  Aligned_cols=78  Identities=18%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHH-HHH----cCCc-EE--EcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI-GKR----FGVT-EF--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~-~~~----lga~-~v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ++.++||+|+ +++|.+.+..+...|+ +|+.+.+ ++++.+. ++.    .+.. ..  .|-.+  .+.+.+.+.+...
T Consensus         7 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~   83 (260)
T PRK08416          7 KGKTLVISGGTRGIGKAIVYEFAQSGV-NIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILE--PETYKELFKKIDE   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHH
Confidence            5789999987 9999999998888999 7877754 4444332 222    2322 12  23332  1233333333221


Q ss_pred             --CCccEEEEccC
Q 016507          271 --GGADYCFECVG  281 (388)
Q Consensus       271 --g~~dvvid~~g  281 (388)
                        +++|+++++.|
T Consensus        84 ~~g~id~lv~nAg   96 (260)
T PRK08416         84 DFDRVDFFISNAI   96 (260)
T ss_pred             hcCCccEEEECcc
Confidence              37999999875

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=93.28  E-value=1.1  Score=41.66  Aligned_cols=88  Identities=25%  Similarity=0.279  Sum_probs=59.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      -.+.+|.|+|-|.+|.+.++.++..|+ +|++..+.....+.+...|+. +.        ++.+.+.     ..|+|+-+
T Consensus        14 LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r~~~s~~~A~~~G~~-v~--------sl~Eaak-----~ADVV~ll   78 (335)
T PRK13403         14 LQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVRPGKSFEVAKADGFE-VM--------SVSEAVR-----TAQVVQML   78 (335)
T ss_pred             hCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEECcchhhHHHHHcCCE-EC--------CHHHHHh-----cCCEEEEe
Confidence            367899999999999999999999999 888876655555556666663 21        2333332     67999988


Q ss_pred             cCCHHH---H-HHHHHHhhcCCceEEEEc
Q 016507          280 VGLASL---V-QEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       280 ~g~~~~---~-~~~~~~l~~~~G~~v~~g  304 (388)
                      .+.+..   + ...+..+++  |.++.++
T Consensus        79 LPd~~t~~V~~~eil~~MK~--GaiL~f~  105 (335)
T PRK13403         79 LPDEQQAHVYKAEVEENLRE--GQMLLFS  105 (335)
T ss_pred             CCChHHHHHHHHHHHhcCCC--CCEEEEC
Confidence            876432   1 235556666  4555554

>PLN02823 spermine synthase

Probab=93.25  E-value=0.79  Score=43.16  Aligned_cols=101  Identities=18%  Similarity=0.130  Sum_probs=60.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-CCc-EEEcCCCC--CCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVT-EFVNSKNC--GDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-ga~-~v~~~~~~--~~~~~~~~i~~~~~g~~dvv  276 (388)
                      ...+|||+|+|. |..+..+++..+..+|++++.+++-.++++++ +.. ..++....  ...+-.+.+. ...+.||+|
T Consensus       103 ~pk~VLiiGgG~-G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~-~~~~~yDvI  180 (336)
T PLN02823        103 NPKTVFIMGGGE-GSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE-KRDEKFDVI  180 (336)
T ss_pred             CCCEEEEECCCc-hHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh-hCCCCccEE
Confidence            457899998764 55666777877766999999999998888874 211 01110000  0022233343 233489999


Q ss_pred             E-EccC----C-------HHHHH-HHHHHhhcCCceEEEEc
Q 016507          277 F-ECVG----L-------ASLVQ-EAYACCRKGWGKTIVLG  304 (388)
Q Consensus       277 i-d~~g----~-------~~~~~-~~~~~l~~~~G~~v~~g  304 (388)
                      | |+..    +       ..-++ .+.+.|+++ |.++.-.
T Consensus       181 i~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~-Gvlv~q~  220 (336)
T PLN02823        181 IGDLADPVEGGPCYQLYTKSFYERIVKPKLNPG-GIFVTQA  220 (336)
T ss_pred             EecCCCccccCcchhhccHHHHHHHHHHhcCCC-cEEEEec
Confidence            5 4221    1       12244 678899997 9887654

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=93.24  E-value=0.26  Score=46.53  Aligned_cols=35  Identities=23%  Similarity=0.170  Sum_probs=30.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ++.+|||+|+ |.+|...++.+...|+ +|+++++.+
T Consensus         5 ~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~~   40 (340)
T PLN02653          5 PRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRRS   40 (340)
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEeccc
Confidence            4678999987 9999999999998999 899887654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=93.24  E-value=0.47  Score=40.48  Aligned_cols=92  Identities=16%  Similarity=0.177  Sum_probs=55.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE--EEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE--FVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~--v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      ++++||=+|.|. |..++.+++.....+|++++.+++..+.++    +++.+.  ++.      .+..+ +  ...+.||
T Consensus        42 ~~~~vLDiGcGt-G~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~------~d~~~-~--~~~~~fD  111 (181)
T TIGR00138        42 DGKKVIDIGSGA-GFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVN------GRAED-F--QHEEQFD  111 (181)
T ss_pred             CCCeEEEecCCC-CccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEe------cchhh-c--cccCCcc
Confidence            378899888644 455555555543338999999987666554    345432  222      12221 1  1123899


Q ss_pred             EEEEccC--CHHHHHHHHHHhhcCCceEEEE
Q 016507          275 YCFECVG--LASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       275 vvid~~g--~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      +|+-..-  -...++.+.+.|+++ |.++..
T Consensus       112 ~I~s~~~~~~~~~~~~~~~~Lkpg-G~lvi~  141 (181)
T TIGR00138       112 VITSRALASLNVLLELTLNLLKVG-GYFLAY  141 (181)
T ss_pred             EEEehhhhCHHHHHHHHHHhcCCC-CEEEEE
Confidence            9976431  123356778889997 998866

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=93.23  E-value=0.56  Score=40.95  Aligned_cols=94  Identities=15%  Similarity=0.098  Sum_probs=60.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc-hHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS-EKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .|.+|||+|+|.+|.-=+.++-..|+ +|+++.... .... +....+... +. +.     +....  +  .++++||-
T Consensus        11 ~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~~~el~~~~~~~~i~~-~~-~~-----~~~~~--~--~~~~lvia   78 (210)
T COG1648          11 EGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEFEPELKALIEEGKIKW-IE-RE-----FDAED--L--DDAFLVIA   78 (210)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCccHHHHHHHHhcCcch-hh-cc-----cChhh--h--cCceEEEE
Confidence            57799999999999999999999999 888875544 2222 222222211 11 11     11110  1  15899999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEEccCC
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      +++....-+...+..... +.++.....+
T Consensus        79 At~d~~ln~~i~~~a~~~-~i~vNv~D~p  106 (210)
T COG1648          79 ATDDEELNERIAKAARER-RILVNVVDDP  106 (210)
T ss_pred             eCCCHHHHHHHHHHHHHh-CCceeccCCc
Confidence            999988455666666664 8888877643

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=93.21  E-value=0.87  Score=42.88  Aligned_cols=86  Identities=28%  Similarity=0.183  Sum_probs=57.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++..|. +|++.+++++.....    ..    ..    .++.+.+.     ..|+|+-+.
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~~~~~~~~----~~----~~----~~l~ell~-----~aDiVil~l  206 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAYPNKDLDF----LT----YK----DSVKEAIK-----DADIISLHV  206 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCChhHhhhh----hh----cc----CCHHHHHh-----cCCEEEEeC
Confidence            56789999999999999999999999 999998876542210    00    00    12332221     678888887


Q ss_pred             CCHHH-----HHHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL-----VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~-----~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +....     ....+..++++ ..+|.++.
T Consensus       207 P~t~~t~~li~~~~l~~mk~g-avlIN~aR  235 (330)
T PRK12480        207 PANKESYHLFDKAMFDHVKKG-AILVNAAR  235 (330)
T ss_pred             CCcHHHHHHHhHHHHhcCCCC-cEEEEcCC
Confidence            75431     23556677775 66776653

>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]

Probab=93.20  E-value=0.46  Score=43.31  Aligned_cols=40  Identities=30%  Similarity=0.265  Sum_probs=33.6

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ..--.++-|+|+|+|++|..++.++...|++++-.++-+.
T Consensus        69 m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdq  108 (430)
T KOG2018|consen   69 MEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQ  108 (430)
T ss_pred             HHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhh
Confidence            3344678899999999999999999999999888887554

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=93.18  E-value=0.95  Score=40.63  Aligned_cols=102  Identities=16%  Similarity=0.237  Sum_probs=64.4

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHh
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~  267 (388)
                      ....+.....+||-+|. .+|..++.+|+.+  +. +|+.++.++++.+.+++    .|...-++...   .+..+.+.+
T Consensus        72 ~~l~~~~~ak~iLEiGT-~~GySal~la~al~~~g-~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~---G~a~e~L~~  146 (247)
T PLN02589         72 NMLLKLINAKNTMEIGV-YTGYSLLATALALPEDG-KILAMDINRENYELGLPVIQKAGVAHKIDFRE---GPALPVLDQ  146 (247)
T ss_pred             HHHHHHhCCCEEEEEeC-hhhHHHHHHHhhCCCCC-EEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe---ccHHHHHHH
Confidence            33445566778999986 4577777788765  34 89999999988777654    45433223222   334455555


Q ss_pred             hc-----CCCccEEE-EccCCH--HHHHHHHHHhhcCCceEE
Q 016507          268 MT-----DGGADYCF-ECVGLA--SLVQEAYACCRKGWGKTI  301 (388)
Q Consensus       268 ~~-----~g~~dvvi-d~~g~~--~~~~~~~~~l~~~~G~~v  301 (388)
                      +.     .+.||.|| |+--..  ..++.+++++++| |.++
T Consensus       147 l~~~~~~~~~fD~iFiDadK~~Y~~y~~~~l~ll~~G-Gviv  187 (247)
T PLN02589        147 MIEDGKYHGTFDFIFVDADKDNYINYHKRLIDLVKVG-GVIG  187 (247)
T ss_pred             HHhccccCCcccEEEecCCHHHhHHHHHHHHHhcCCC-eEEE
Confidence            43     24899995 443222  3367888999986 6654

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=93.16  E-value=0.59  Score=42.13  Aligned_cols=79  Identities=22%  Similarity=0.140  Sum_probs=47.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-hHHH----HHHHcCCcE---EEcCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE----IGKRFGVTE---FVNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~----~~~~lga~~---v~~~~~~~~~~~~~~i~~~~--  269 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|+.+.++. +..+    .++..+...   ..|-.+  .....+.+.+..  
T Consensus         6 ~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~   82 (261)
T PRK08936          6 EGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTV--ESDVVNLIQTAVKE   82 (261)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            5789999987 9999999999989999 777766643 2222    222233321   223333  122222222221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|+++++.|.
T Consensus        83 ~g~id~lv~~ag~   95 (261)
T PRK08936         83 FGTLDVMINNAGI   95 (261)
T ss_pred             cCCCCEEEECCCC
Confidence            1379999998874

>TIGR02415 23BDH acetoin reductases

Probab=93.16  E-value=0.55  Score=42.00  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      ++||+|+ |.+|...++.+...|+ +|+.+.+++++.+.+    ...+... .  .|-.+  .+.+.+.+.+...  ++.
T Consensus         2 ~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~i~~~~~~~~~~~~~i   78 (254)
T TIGR02415         2 VALVTGGAQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGGKAVAYKLDVSD--KDQVFSAIDQAAEKFGGF   78 (254)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHcCCC
Confidence            6899987 9999999998888899 899888876554322    2223221 2  23222  1223333333221  368


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        79 d~vi~~ag~   87 (254)
T TIGR02415        79 DVMVNNAGV   87 (254)
T ss_pred             CEEEECCCc
Confidence            999998874

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PLN02244 tocopherol O-methyltransferase

Probab=93.15  E-value=0.34  Score=45.82  Aligned_cols=95  Identities=21%  Similarity=0.275  Sum_probs=61.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCc-E--EEcCCCCCCccHHHHHHhhcCCC
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-E--FVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~-~--v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      +++++||=+|.|. |..+..+++..|+ +|++++.++...+.+++.    +.. .  ++..+-   .++     .+..+.
T Consensus       117 ~~~~~VLDiGCG~-G~~~~~La~~~g~-~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~---~~~-----~~~~~~  186 (340)
T PLN02244        117 KRPKRIVDVGCGI-GGSSRYLARKYGA-NVKGITLSPVQAARANALAAAQGLSDKVSFQVADA---LNQ-----PFEDGQ  186 (340)
T ss_pred             CCCCeEEEecCCC-CHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc---ccC-----CCCCCC
Confidence            6788999988754 6677778887788 999999999877766542    321 1  111111   110     112237


Q ss_pred             ccEEEEccCC------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          273 ADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       273 ~dvvid~~g~------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ||+|+..-..      ...+.++.+.|+++ |+++....
T Consensus       187 FD~V~s~~~~~h~~d~~~~l~e~~rvLkpG-G~lvi~~~  224 (340)
T PLN02244        187 FDLVWSMESGEHMPDKRKFVQELARVAAPG-GRIIIVTW  224 (340)
T ss_pred             ccEEEECCchhccCCHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            9999864332      23477899999998 99987653

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=93.05  E-value=1.8  Score=35.60  Aligned_cols=99  Identities=22%  Similarity=0.276  Sum_probs=54.9

Q ss_pred             EEEEEccchhHHHHHHHHHH-cCCcEEEEEcC--CchHHHHHHH----cCC---cE-------EEcCCCCCCccH-HHHH
Q 016507          204 TVVIFGLGSIGLAVAEGARL-CGATRIIGVDV--ISEKFEIGKR----FGV---TE-------FVNSKNCGDKSV-SQII  265 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~-~g~~~Vi~~~~--~~~~~~~~~~----lga---~~-------v~~~~~~~~~~~-~~~i  265 (388)
                      +|.|+|.|.+|...++.+.. .+. +++++..  +.+...++.+    +|.   +.       +++-+.  ..-+ ....
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~-~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~--i~~~~~~~p   78 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDI-EVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKK--IKVLAERDP   78 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCC-EEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEE--EEEEecCCh
Confidence            58899999999988887764 456 5555432  3344444432    221   10       111000  0000 0011


Q ss_pred             HhhcCC--CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          266 IDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       266 ~~~~~g--~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .++..+  ++|+|+||+|.-...+.+...+..+ .+-|.++..
T Consensus        79 ~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~G-akkViisap  120 (149)
T smart00846       79 ANLPWKELGVDIVVECTGKFTTREKASAHLKAG-AKKVIISAP  120 (149)
T ss_pred             HHCcccccCCeEEEeccccccchHHHHHHHHcC-CCEEEeCCC
Confidence            111112  8999999988755456666788776 777777664

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=93.04  E-value=1.2  Score=40.07  Aligned_cols=98  Identities=21%  Similarity=0.112  Sum_probs=66.9

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      +.......++++||=+|.|. |..+..+++.. +. +|++++.++.-.+.+++.+++.+.       .+.. .+.  ..+
T Consensus        21 ll~~l~~~~~~~vLDlGcG~-G~~~~~l~~~~p~~-~v~gvD~s~~~~~~a~~~~~~~~~-------~d~~-~~~--~~~   88 (255)
T PRK14103         21 LLARVGAERARRVVDLGCGP-GNLTRYLARRWPGA-VIEALDSSPEMVAAARERGVDART-------GDVR-DWK--PKP   88 (255)
T ss_pred             HHHhCCCCCCCEEEEEcCCC-CHHHHHHHHHCCCC-EEEEEECCHHHHHHHHhcCCcEEE-------cChh-hCC--CCC
Confidence            44556677889999998765 66777777764 56 899999999888888776654332       1221 111  123


Q ss_pred             CccEEEEccC-----C-HHHHHHHHHHhhcCCceEEEE
Q 016507          272 GADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       272 ~~dvvid~~g-----~-~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      .||+|+....     . ...+..+.+.|+++ |.++..
T Consensus        89 ~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~l~~~  125 (255)
T PRK14103         89 DTDVVVSNAALQWVPEHADLLVRWVDELAPG-SWIAVQ  125 (255)
T ss_pred             CceEEEEehhhhhCCCHHHHHHHHHHhCCCC-cEEEEE
Confidence            8999987443     2 23467888999998 998764

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=93.02  E-value=0.71  Score=43.79  Aligned_cols=41  Identities=17%  Similarity=0.005  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~  240 (388)
                      -+.+.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r~~~~~~   48 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLRDPAKSL   48 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCChHHHH
Confidence            456779999987 9999999998888899 8998877765544

>TIGR00417 speE spermidine synthase

Probab=93.00  E-value=0.94  Score=41.32  Aligned_cols=103  Identities=14%  Similarity=0.093  Sum_probs=60.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC-C-cEEEcCCCC--CCccHHHHHHhhcCCCccE
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-V-TEFVNSKNC--GDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg-a-~~v~~~~~~--~~~~~~~~i~~~~~g~~dv  275 (388)
                      +..++||++|+|. |..+..+++.....++.+++.+++-.+.++++- . ...++....  ...+..+.+.+ ..+.||+
T Consensus        71 ~~p~~VL~iG~G~-G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~-~~~~yDv  148 (270)
T TIGR00417        71 PNPKHVLVIGGGD-GGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD-TENTFDV  148 (270)
T ss_pred             CCCCEEEEEcCCc-hHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-CCCCccE
Confidence            3456999998765 445566667665568999999888777766531 0 000110000  00122333333 2348999


Q ss_pred             EEEccC----------CHHHHHHHHHHhhcCCceEEEEcc
Q 016507          276 CFECVG----------LASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       276 vid~~g----------~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      |+--..          ....++.+.+.|+++ |.++....
T Consensus       149 Ii~D~~~~~~~~~~l~~~ef~~~~~~~L~pg-G~lv~~~~  187 (270)
T TIGR00417       149 IIVDSTDPVGPAETLFTKEFYELLKKALNED-GIFVAQSE  187 (270)
T ss_pred             EEEeCCCCCCcccchhHHHHHHHHHHHhCCC-cEEEEcCC
Confidence            965322          123356888999997 99987643

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK06046 alanine dehydrogenase; Validated

Probab=92.99  E-value=1.2  Score=41.96  Aligned_cols=94  Identities=15%  Similarity=0.110  Sum_probs=61.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HcCCcEEEEEcCCchHHHHHH-Hc----CCcEEEcCCCCCCccHHHHHHhhcCCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGK-RF----GVTEFVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~-~~g~~~Vi~~~~~~~~~~~~~-~l----ga~~v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +...+|.|+|+|..|...+..+. ..+.++|.+.++++++.+.+. .+    +..... .     .++.+.+      ..
T Consensus       127 ~~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~-~-----~~~~~~l------~a  194 (326)
T PRK06046        127 KDSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTV-A-----EDIEEAC------DC  194 (326)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEE-e-----CCHHHHh------hC
Confidence            34568999999999988777655 567878888999887766433 33    322111 1     2233322      27


Q ss_pred             cEEEEccCCHHHHHHHHHHhhcCCceEEEEccCC
Q 016507          274 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       274 dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      |+|+.|+++...+ -..+.++++ -++..+|...
T Consensus       195 DiVv~aTps~~P~-~~~~~l~~g-~hV~~iGs~~  226 (326)
T PRK06046        195 DILVTTTPSRKPV-VKAEWIKEG-THINAIGADA  226 (326)
T ss_pred             CEEEEecCCCCcE-ecHHHcCCC-CEEEecCCCC
Confidence            9999999865422 234567886 8888898754

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=92.98  E-value=0.48  Score=42.34  Aligned_cols=74  Identities=26%  Similarity=0.320  Sum_probs=46.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc-EE--EcCCCCCCccHHHHHHhhcC--CCcc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGAD  274 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~-~v--~~~~~~~~~~~~~~i~~~~~--g~~d  274 (388)
                      ++.++||+|+ |.+|...++.+...|+ +|++++++.     +...+.. ..  .|-.+  .+.+.+.+.+...  +++|
T Consensus         7 ~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~-----~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id   78 (252)
T PRK08220          7 SGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF-----LTQEDYPFATFVLDVSD--AAAVAQVCQRLLAETGPLD   78 (252)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch-----hhhcCCceEEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            4678999987 9999999998888899 899998765     1122211 11  23222  1223333332221  3689


Q ss_pred             EEEEccCC
Q 016507          275 YCFECVGL  282 (388)
Q Consensus       275 vvid~~g~  282 (388)
                      ++|.+.|.
T Consensus        79 ~vi~~ag~   86 (252)
T PRK08220         79 VLVNAAGI   86 (252)
T ss_pred             EEEECCCc
Confidence            99999875

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=92.95  E-value=0.77  Score=46.21  Aligned_cols=34  Identities=35%  Similarity=0.595  Sum_probs=31.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++.
T Consensus       137 ~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~  170 (525)
T TIGR01327       137 YGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDPY  170 (525)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECCC
Confidence            56899999999999999999999999 99999874

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06932 glycerate dehydrogenase; Provisional

Probab=92.91  E-value=0.52  Score=44.06  Aligned_cols=84  Identities=20%  Similarity=0.212  Sum_probs=53.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|-|.+|...+++++.+|+ +|++.++.....     ...      ..   .++.+.+.     ..|+|+-+.
T Consensus       146 ~gktvgIiG~G~IG~~va~~l~~fg~-~V~~~~~~~~~~-----~~~------~~---~~l~ell~-----~sDiv~l~~  205 (314)
T PRK06932        146 RGSTLGVFGKGCLGTEVGRLAQALGM-KVLYAEHKGASV-----CRE------GY---TPFEEVLK-----QADIVTLHC  205 (314)
T ss_pred             CCCEEEEECCCHHHHHHHHHHhcCCC-EEEEECCCcccc-----ccc------cc---CCHHHHHH-----hCCEEEEcC
Confidence            47899999999999999999999999 899987543210     000      00   12333332     467776666


Q ss_pred             CCHHH-----HHHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL-----VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~-----~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +....     -...+..|+++ ..+|.++.
T Consensus       206 Plt~~T~~li~~~~l~~mk~g-a~lIN~aR  234 (314)
T PRK06932        206 PLTETTQNLINAETLALMKPT-AFLINTGR  234 (314)
T ss_pred             CCChHHhcccCHHHHHhCCCC-eEEEECCC
Confidence            53321     14667777776 77776653

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=92.90  E-value=1.3  Score=47.92  Aligned_cols=94  Identities=12%  Similarity=0.126  Sum_probs=62.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHH-cCCc------------EEEEEcCCchHHHHHHH-c-CCcE-EEcCCCCCCccHHHHH
Q 016507          202 GSTVVIFGLGSIGLAVAEGARL-CGAT------------RIIGVDVISEKFEIGKR-F-GVTE-FVNSKNCGDKSVSQII  265 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~-~g~~------------~Vi~~~~~~~~~~~~~~-l-ga~~-v~~~~~~~~~~~~~~i  265 (388)
                      ..+|+|+|+|.+|..++..+.. .++.            .|++.+.+.++.+.+.+ + +++. .+|..+     . +.+
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D-----~-e~L  642 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSD-----S-ESL  642 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCC-----H-HHH
Confidence            5699999999999998887754 3442            37777777766655433 4 4322 344443     2 334


Q ss_pred             HhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          266 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      .++.. +.|+|+.|++.......+..++..+ -+++..
T Consensus       643 ~~~v~-~~DaVIsalP~~~H~~VAkaAieaG-kHvv~e  678 (1042)
T PLN02819        643 LKYVS-QVDVVISLLPASCHAVVAKACIELK-KHLVTA  678 (1042)
T ss_pred             HHhhc-CCCEEEECCCchhhHHHHHHHHHcC-CCEEEC
Confidence            33322 5999999999987788888888885 555544

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=92.90  E-value=0.51  Score=48.91  Aligned_cols=77  Identities=21%  Similarity=0.174  Sum_probs=51.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch---------------------HHHHHHHcCCcEEEcCCCCCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE---------------------KFEIGKRFGVTEFVNSKNCGDK  259 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~---------------------~~~~~~~lga~~v~~~~~~~~~  259 (388)
                      .+.+|+|+|+|+.|+.++..+...|+ +|++++..+.                     ..+.++++|++..++..-..+-
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~-~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv  270 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGH-DVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI  270 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-cEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence            56899999999999999999999999 8988876542                     1344566787655554210001


Q ss_pred             cHHHHHHhhcCCCccEEEEccCCH
Q 016507          260 SVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       260 ~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      .+ +.+.    ..||.||-++|..
T Consensus       271 ~~-~~~~----~~~DaVilAtGa~  289 (652)
T PRK12814        271 TL-EELQ----KEFDAVLLAVGAQ  289 (652)
T ss_pred             CH-HHHH----hhcCEEEEEcCCC
Confidence            11 1221    1589998888864

>PRK06436 glycerate dehydrogenase; Provisional

Probab=92.90  E-value=0.56  Score=43.54  Aligned_cols=35  Identities=29%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .|.+|.|+|-|.+|...+++++.+|+ +|++.+++.
T Consensus       121 ~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~~  155 (303)
T PRK06436        121 YNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRSY  155 (303)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence            58999999999999999999999999 999998753

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=92.90  E-value=0.33  Score=45.03  Aligned_cols=73  Identities=15%  Similarity=0.130  Sum_probs=43.8

Q ss_pred             EEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       205 VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      |||+|+ |.+|..+++.+...|...|+++++...... +..++...+. +.++   .++.+.+.+..-.++|+|+++.+
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~-~~~~~~~~~~~d~~~---~~~~~~~~~~~~~~~D~vvh~A~   75 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHK-FLNLADLVIADYIDK---EDFLDRLEKGAFGKIEAIFHQGA   75 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCchh-hhhhhheeeeccCcc---hhHHHHHHhhccCCCCEEEECcc
Confidence            689987 999999999999889756888765443222 2222222122 1222   33333333311138999999986

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	388
3uko_A	378	Crystal Structure Of S-Nitrosoglutathione Reductase		1e-101
4dl9_A	396	Crystal Structure Of S-nitrosoglutathione Reductase		2e-97
3qj5_A	374	S-Nitrosoglutathione Reductase (Gsnor) In Complex W		7e-80
1mc5_A	374	Ternary Complex Of Human Glutathione-Dependent Form		9e-80
1teh_A	373	Structure Of Human Liver Chichi Alcohol Dehydrogena		1e-79
2fzw_A	373	Structure Of The Binary Complex Of The E67l Mutant		8e-79
1cdo_A	374	Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Co		2e-76
3cos_A	381	Crystal Structure Of Human Class Ii Alcohol Dehydro		1e-71
1ee2_B	373	The Structure Of Steroid-Active Alcohol Dehydrogena		1e-71
1ee2_A	373	The Structure Of Steroid-Active Alcohol Dehydrogena		2e-71
6adh_A	374	Structure Of Triclinic Ternary Complex Of Horse Liv		3e-71
1qv6_A	374	Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG		4e-71
1n8k_A	374	Horse Liver Alcohol Dehydrogenase Val292thr Mutant		5e-71
1ju9_A	374	Horse Liver Alcohol Dehydrogenase Val292ser Mutant		8e-71
3oq6_A	374	Horse Liver Alcohol Dehydrogenase A317c Mutant Comp		8e-71
1axg_A	374	Crystal Structure Of The Val203->ala Mutant Of Live		9e-71
1qlh_A	374	Horse Liver Alcohol Dehydrogenase Complexed To Nad		1e-70
1axe_A	374	Crystal Structure Of The Active-Site Mutant Phe93->		2e-70
1mgo_A	374	Horse Liver Alcohol Dehydrogenase Phe93ala Mutant L		3e-70
1agn_A	373	X-Ray Structure Of Human Sigma Alcohol Dehydrogenas		3e-70
1d1t_A	373	Mutant Of Human Sigma Alcohol Dehydrogenase With Le		4e-70
1a71_A	374	Ternary Complex Of An Active Site Double Mutant Of		5e-70
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		3e-69
1ht0_A	374	Human Gamma-2 Alcohol Dehydrogense Length = 374		3e-68
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		4e-68
1hdy_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-67
1hdx_A	374	Three-Dimensional Structures Of Three Human Alcohol		1e-66
1hdz_A	374	Three-Dimensional Structures Of Three Human Alcohol		2e-66
1htb_A	374	Crystallization Of Human Beta3 Alcohol Dehydrogenas		2e-65
1hso_A	374	Human Alpha Alcohol Dehydrogenase (Adh1a) Length =		3e-65
1p0c_A	373	Crystal Structure Of The Nadp(H)-Dependent Vertebra		6e-64
1f8f_A	371	Crystal Structure Of Benzyl Alcohol Dehydrogenase F		6e-33
3meq_A	365	Crystal Structure Of Alcohol Dehydrogenase From Bru		6e-17
1vj0_A	380	Crystal Structure Of Alcohol Dehydrogenase (Tm0436)		1e-13
4ej6_A	370	Crystal Structure Of A Putative Zinc-Binding Dehydr		1e-13
3s1l_A	340	Crystal Structure Of Apo-Form Furx Length = 340		8e-13
1rjw_A	339	Crystal Structure Of Nad(+)-Dependent Alcohol Dehyd		4e-12
1llu_A	342	The Ternary Complex Of Pseudomonas Aeruginosa Alcoh		6e-12
3pii_A	339	Crystal Structure Of Mutant Of Ht- Alcohol Dehydrog		7e-12
1ykf_A	352	Nadp-Dependent Alcohol Dehydrogenase From Thermoana		5e-11
2nvb_A	352	Contribution Of Pro275 To The Thermostability Of Th		5e-11
3ftn_A	352	Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDRO		8e-11
3fsr_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-10
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		1e-10
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		2e-10
2xaa_A	345	Alcohol Dehydrogenase Adh-'a' From Rhodococcus Rube		3e-10
3fpl_A	351	Chimera Of Alcohol Dehydrogenase By Exchange Of The		1e-09
2b83_A	351	A Single Amino Acid Substitution In The Clostridium		1e-09
2h6e_A	344	Crystal Structure Of The D-Arabinose Dehydrogenase		2e-09
1ped_A	351	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form		2e-09
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		2e-09
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		2e-09
1jqb_A	351	Alcohol Dehydrogenase From Clostridium Beijerinckii		3e-09
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		4e-09
1y9a_A	360	Alcohol Dehydrogenase From Entamoeba Histolotica In		1e-08
3fpc_A	352	Chimera Of Alcohol Dehydrogenase By Exchange Of The		2e-08
1h2b_A	359	Crystal Structure Of The Alcohol Dehydrogenase From		2e-08
2eer_A	347	Structural Study Of Project Id St2577 From Sulfolob		2e-08
2oui_A	360	D275p Mutant Of Alcohol Dehydrogenase From Protozoa		4e-08
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		4e-08
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		5e-08
4eez_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		1e-07
4eex_A	348	Crystal Structure Of Lactococcus Lactis Alcohol Deh		3e-07
4ilk_A	359	Crystal Structure Of Short Chain Alcohol Dehydrogen		4e-07
4a2c_A	346	Crystal Structure Of Galactitol-1-Phosphate Dehydro		2e-06
3i4c_A	347	Crystal Structure Of Sulfolobus Solfataricus Adh(Ss		5e-05
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		6e-05
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		1e-04
2eih_A	343	Crystal Structure Of Nad-Dependent Alcohol Dehydrog		1e-04
1nto_A	347	N249y Mutant Of Alcohol Dehydrogenase From The Arch		2e-04
3uog_A	363	Crystal Structure Of Putative Alcohol Dehydrogenase		3e-04
3two_A	348	The Crystal Structure Of Cad From Helicobacter Pylo		3e-04
1r37_A	347	Alcohol Dehydrogenase From Sulfolobus Solfataricus		4e-04

>pdb|3UKO|A Chain A, Crystal Structure Of S-Nitrosoglutathione Reductase From Arabidopsis Thaliana, Complex With Nadh Length = 378

Iteration: 1
 Score =  364 bits (935), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 178/379 (46%), Positives = 255/379 (67%), Gaps = 10/379 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T G+ I C+AA+A  P +PLVI++V V PP + EVR++I+ T+LCH+D   W  KD   +
Sbjct: 2   TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGL 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLC----SAFPF 125
           FP ILGHEA                    IP + A+C EC  C+S K NLC    SA   
Sbjct: 62  FPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGV 121
Query: 126 KISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DPT P ++ CLL CG
Sbjct: 122 GI---MMNDRKSRF-SVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCG 177
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           V TG+GA W TA VE GS V IFGLG++GLAVAEGA+  GA+RIIG+D+ S+K+E  K+F
Sbjct: 178 VPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKF 237
Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           GV EFVN K+  DK + ++I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV
Sbjct: 238 GVNEFVNPKD-HDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGV 296
Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
              G ++S   F+++ +G++  G+ FGG K+++ +P L+++YM+KE+++D+++TH +   
Sbjct: 297 AASGQEISTRPFQLV-TGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLG 355
Query: 366 EINSAFDLLIKGKCLRCVI 384
           EIN AFDLL +G CLRCV+
Sbjct: 356 EINKAFDLLHEGTCLRCVL 374

>pdb|4DL9|A Chain A, Crystal Structure Of S-nitrosoglutathione Reductase From Tomato (solanum Lycopersicum) In Complex With Nad+ Length = 396

Iteration: 1
 Score =  352 bits (902), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 171/381 (44%), Positives = 248/381 (65%), Gaps = 4/381 (1%)
Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           S+ T G+ I C+AA+A  P +PLVI++V V PP + EVRV+++ T+LCH+D   W  KD 
Sbjct: 17  SSATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRVKVLYTALCHTDAYTWSGKDP 76
Query: 67  PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             +FP +LGHEA                    IP + A+C EC  C+S K NLC      
Sbjct: 77  EGLFPCVLGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAA 136
Query: 127 ISPW-MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                M  D+ SRF  + G+ I+HF+  S+FS+YTV+    V K+DP  P  + CLL CG
Sbjct: 137 TGVGVMMNDRKSRFS-INGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLEKVCLLGCG 195
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           V TG+GA W TA VE GS V +FGLG++GLAVAEGA+  GA+RIIG+D+ S+KF+  K F
Sbjct: 196 VPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFDRAKNF 255
Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           GVTEF+N K   ++ + Q+I+D+TDGG DY FEC+G  S+++ A  CC KGWG ++++GV
Sbjct: 256 GVTEFINPKE-HEQPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGV 314
Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
              G ++S   F+++ +G++  G+ FGG K++S +P L+ +Y+ KE+++D+++TH M   
Sbjct: 315 AASGQEISTRPFQLV-TGRVWKGTAFGGFKSRSQVPSLVDKYLKKEIKVDEYITHNMTLA 373
Query: 366 EINSAFDLLIKGKCLRCVIWM 386
           +IN AFDL+  G CLR V+ M
Sbjct: 374 DINKAFDLMHDGDCLRVVLDM 394

>pdb|3QJ5|A Chain A, S-Nitrosoglutathione Reductase (Gsnor) In Complex With N6022 Length = 374

Iteration: 1
 Score =  294 bits (752), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 155/375 (41%), Positives = 229/375 (61%), Gaps = 3/375 (0%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           +A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    
Sbjct: 1   SANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGC 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHE                     IP ++  C EC  C + K NLC         
Sbjct: 61  FPVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGK 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG
Sbjct: 121 GLMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE
Sbjct: 180 YGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G
Sbjct: 240 CINPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASG 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
            +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN 
Sbjct: 299 EEIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINK 357
Query: 370 AFDLLIKGKCLRCVI 384
           AF+L+  GK +R V+
Sbjct: 358 AFELMHSGKSIRTVV 372

>pdb|1MC5|A Chain A, Ternary Complex Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With S-(Hydroxymethyl)glutathione And Nadh Length = 374

Iteration: 1
 Score =  293 bits (751), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 228/374 (60%), Gaps = 3/374 (0%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 2   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 61
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGHE                     IP ++  C EC  C + K NLC          
Sbjct: 62  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 121
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 122 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 180
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 181 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 240
Query: 251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 310
           +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 241 INPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 299
Query: 311 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 300 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 358
Query: 371 FDLLIKGKCLRCVI 384
           F+L+  GK +R V+
Sbjct: 359 FELMHSGKSIRTVV 372

>pdb|1TEH|A Chain A, Structure Of Human Liver Chichi Alcohol Dehydrogenase (A Glutathione- Dependent Formaldehyde Dehydrogenase) Length = 373

Iteration: 1
 Score =  293 bits (751), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 155/374 (41%), Positives = 228/374 (60%), Gaps = 3/374 (0%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGHE                     IP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHEGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239
Query: 251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 310
           +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 240 INPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 298
Query: 311 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 299 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 357
Query: 371 FDLLIKGKCLRCVI 384
           F+L+  GK +R V+
Sbjct: 358 FELMHSGKSIRTVV 371

>pdb|2FZW|A Chain A, Structure Of The Binary Complex Of The E67l Mutant Of Human Glutathione-Dependent Formaldehyde Dehydrogenase With Nad(H) Length = 373

Iteration: 1
 Score =  290 bits (743), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 154/374 (41%), Positives = 227/374 (60%), Gaps = 3/374 (0%)
Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60
Query: 71  PRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH                      IP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239
Query: 251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 310
           +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 240 INPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 298
Query: 311 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 299 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 357
Query: 371 FDLLIKGKCLRCVI 384
           F+L+  GK +R V+
Sbjct: 358 FELMHSGKSIRTVV 371

>pdb|1CDO|A Chain A, Alcohol Dehydrogenase (E.C.1.1.1.1) (Ee Isozyme) Complexed With Nicotinamide Adenine Dinucleotide (Nad), And Zinc Length = 374

Iteration: 1
 Score =  282 bits (721), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 150/375 (40%), Positives = 222/375 (59%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE                     IP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG
Sbjct: 122 DVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  K FG T+
Sbjct: 181 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
           FVN  N   + +SQ++  MT+GG D+  ECVG   +++ A   C KGWG ++++G     
Sbjct: 241 FVNP-NDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDL- 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             ++    +++ +G+   GS+FGG K K  +P ++K Y+DK+++LD+F+TH M  E +N 
Sbjct: 299 HDVATRPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVND 357
Query: 370 AFDLLIKGKCLRCVI 384
           A DL+  GKC+R V+
Sbjct: 358 AIDLMKHGKCIRTVL 372

>pdb|3COS|A Chain A, Crystal Structure Of Human Class Ii Alcohol Dehydrogenase (Adh4) In Complex With Nad And Zn Length = 381

Iteration: 1
 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 149/382 (39%), Positives = 214/382 (56%), Gaps = 7/382 (1%)
Query: 7   SNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF 66
           S  T GK I+C+AAIA   G+PL I+EV V PP +HEVR++II TSLCH+D T    K  
Sbjct: 1   SMGTKGKVIKCKAAIAWEAGKPLCIEEVEVAPPKAHEVRIQIIATSLCHTDATVIDSKFE 60
Query: 67  PAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFK 126
              FP I+GHEA                    IP +   C +C  C S   NLC      
Sbjct: 61  GLAFPVIVGHEAAGIVESIGPGVTNVKPGDKVIPLYAPLCRKCKFCLSPLTNLCGKISNL 120
Query: 127 ISP----WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 182
            SP     +  D+TSRF   +G+ ++HF   S+FS+YTV+   ++ K+D      R CLL
Sbjct: 121 KSPASDQQLMEDKTSRFT-CKGKPVYHFFGTSTFSQYTVVSDINLAKIDDDANLERVCLL 179
Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG 242
            CG STG GAA   A V  GST  +FGLG +GL+   G +  GA+RIIG+D+ SEKF   
Sbjct: 180 GCGFSTGYGAAINNAKVTPGSTCAVFGLGGVGLSAVMGCKAAGASRIIGIDINSEKFVKA 239
Query: 243 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIV 302
           K  G T+ +N ++   K + ++II++T GG D+  +C G +  ++ A  C   GWG    
Sbjct: 240 KALGATDCLNPRDL-HKPIQEVIIELTKGGVDFALDCAGGSETMKAALDCTTAGWGSCTF 298
Query: 303 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEM 362
           +GV      L++   E++  G+ + G+ FGG K+   IP L+  Y +K+  LD  VTH +
Sbjct: 299 IGVAAGSKGLTVFPEELI-IGRTINGTFFGGWKSVDSIPKLVTDYKNKKFNLDALVTHTL 357
Query: 363 KFEEINSAFDLLIKGKCLRCVI 384
            F++I+ AFDL+ +GK +R ++
Sbjct: 358 PFDKISEAFDLMNQGKSIRTIL 379

>pdb|1EE2|B Chain B, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  266 bits (680), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 146/379 (38%), Positives = 215/379 (56%), Gaps = 13/379 (3%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD          A 
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSD-DHVVSGTLVAP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F+  C +C  C+  +GNLC       + 
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK-----NL 115
Query: 130 WMPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG
Sbjct: 116 SMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCG 174
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  
Sbjct: 175 FSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 234
Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           G TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV
Sbjct: 235 GATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGV 293
Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
                 LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE
Sbjct: 294 PPDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFE 352
Query: 366 EINSAFDLLIKGKCLRCVI 384
           +IN  FDLL  GK +R ++
Sbjct: 353 KINEGFDLLRSGKSIRTIL 371

>pdb|1EE2|A Chain A, The Structure Of Steroid-Active Alcohol Dehydrogenase At 1.54 A Resolution Length = 373

Iteration: 1
 Score =  266 bits (680), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 146/379 (38%), Positives = 215/379 (56%), Gaps = 13/379 (3%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD          A 
Sbjct: 2   TAGKVIKCKAAVLWEQKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSD-DHVVSGTLVAP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F+  C +C  C+  +GNLC       + 
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFIPQCGKCSVCKHPEGNLCLK-----NL 115
Query: 130 WMPR----DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            MPR    D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG
Sbjct: 116 SMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLVGCG 174
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  
Sbjct: 175 FSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV 234
Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           G TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV
Sbjct: 235 GATECVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVAALSCCQEAYGVSVIVGV 293
Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
                 LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE
Sbjct: 294 PPDSQNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFE 352
Query: 366 EINSAFDLLIKGKCLRCVI 384
           +IN  FDLL  GK +R ++
Sbjct: 353 KINEGFDLLRSGKSIRTIL 371

>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver Alcohol Dehydrogenase At 2.9 Angstroms Resolution Length = 374

Iteration: 1
 Score =  265 bits (677), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 211/375 (56%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1QV6|A Chain A, Horse Liver Alcohol Dehydrogenase His51glnLYS228ARG MUTANT Complexed With Nad+ And 2,4-Difluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  265 bits (676), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 211/375 (56%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDQVVS-GTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  ++F   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDRFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant Complexed To Nad+ And Pyrazole Length = 374

Iteration: 1
 Score =  264 bits (675), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 210/375 (56%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G +++ GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVITGVPPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant Length = 374

Iteration: 1
 Score =  264 bits (674), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 210/375 (56%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G +++ GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVISGVPPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol Length = 374

Iteration: 1
 Score =  264 bits (674), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 210/375 (56%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G +FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGCIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver Alcohol Dehydrogenase Complexed With Cofactor Nad And Inhibitor Trifluoroethanol Solved To 2.5 Angstrom Resolution Length = 374

Iteration: 1
 Score =  263 bits (673), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 141/375 (37%), Positives = 210/375 (56%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double Mutant Of Gly 293 Ala And Pro 295 Thr Length = 374

Iteration: 1
 Score =  263 bits (672), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 210/375 (56%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++ V    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVAVTPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of Horse Liver Alcohol Dehydrogenase In Complex With Nad And Inhibitor Trifluoroethanol Length = 374

Iteration: 1
 Score =  262 bits (670), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 211/375 (56%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP +   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant Length = 374

Iteration: 1
 Score =  261 bits (668), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 210/375 (56%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP     C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLATPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1AGN|A Chain A, X-Ray Structure Of Human Sigma Alcohol Dehydrogenase Length = 373

Iteration: 1
 Score =  261 bits (668), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 217/375 (57%), Gaps = 5/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+E+ V PP + EVR++I+ T +C +D    K     + 
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIK-GTMVSK 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP I+GHEA                    IP FL  C EC  CR+  GNLC         
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDI-TGR 119
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG
Sbjct: 120 GVLADGTTRFT-CKGKPVHHFMNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE 238
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            ++ K+   K +S+++ +MT     Y FE +G    + +A A C   +G ++V+GV    
Sbjct: 239 CISPKD-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSA 297
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             L+     +L +G+   G +FGGLK++ D+P L+  ++ K+ +LD+ +TH + F++I+ 
Sbjct: 298 KMLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISE 356
Query: 370 AFDLLIKGKCLRCVI 384
            F+LL  G+ +R V+
Sbjct: 357 GFELLNSGQSIRTVL 371

>pdb|1D1T|A Chain A, Mutant Of Human Sigma Alcohol Dehydrogenase With Leucine At Position 141 Length = 373

Iteration: 1
 Score =  261 bits (668), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 217/375 (57%), Gaps = 5/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+E+ V PP + EVR++I+ T +C +D    K     + 
Sbjct: 2   TAGKVIKCKAAVLWEQKQPFSIEEIEVAPPKTKEVRIKILATGICRTDDHVIK-GTMVSK 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP I+GHEA                    IP FL  C EC  CR+  GNLC         
Sbjct: 61  FPVIVGHEATGIVESIGEGVTTVKPGDKVIPLFLPQCRECNACRNPDGNLCIRSDI-TGR 119
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D T+RF   +G+ +HHF++ S+F+EYTV+D + V K+D   PP + CL+ CG STG
Sbjct: 120 GVLADGTTRFT-CKGKPVHHFLNTSTFTEYTVVDESSVAKIDDAAPPEKVCLIGCGFSTG 178
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D+  +KFE     G TE
Sbjct: 179 YGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATE 238
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            ++ K+   K +S+++ +MT     Y FE +G    + +A A C   +G ++V+GV    
Sbjct: 239 CISPKD-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSA 297
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             L+     +L +G+   G +FGGLK++ D+P L+  ++ K+ +LD+ +TH + F++I+ 
Sbjct: 298 KMLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISE 356
Query: 370 AFDLLIKGKCLRCVI 384
            F+LL  G+ +R V+
Sbjct: 357 GFELLNSGQSIRTVL 371

>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With Nad And Trifluoroethanol Length = 374

Iteration: 1
 Score =  261 bits (667), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 140/375 (37%), Positives = 210/375 (56%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSD-DHVVSGTLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA                    IP +   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLWTPQCGKCRVCKHPEGNFCLKNDLSMPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG  GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGAGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPM-LLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  258 bits (660), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 147/379 (38%), Positives = 213/379 (56%), Gaps = 10/379 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +CH+D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCHTDINATDPKK-KAL 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFK-- 126
           FP +LGHE                     IP F   C  C  C S   NLC     FK  
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 127 -ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239
Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           G T+ +N +   DK V  +I ++T GG DY  +C G A  ++ A  C   GWG   V+G 
Sbjct: 240 GATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA 298
Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
                ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + FE
Sbjct: 299 KV--DEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFE 355
Query: 366 EINSAFDLLIKGKCLRCVI 384
            IN A DL+ +GK +R ++
Sbjct: 356 SINDAIDLMKEGKSIRTIL 374

>pdb|1HT0|A Chain A, Human Gamma-2 Alcohol Dehydrogense Length = 374

Iteration: 1
 Score =  255 bits (651), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 139/375 (37%), Positives = 206/375 (54%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C SD       +    
Sbjct: 2   TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAAGICRSDEHVVS-GNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRICKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF    G+ IHHFV VS+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRF-TCSGKPIHHFVGVSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTPGSTCAVFGLGGVGLSVVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGQLDTMMASLLCCHEACGTSVIVGVPPDS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L +G+   G++FGG K+K  +P L+  +M K+  LD  +T+ + FE+IN 
Sbjct: 299 QNLSINPM-LLLTGRTWKGAIFGGFKSKESVPKLVADFMAKKFSLDALITNVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  GK +R V+
Sbjct: 358 GFDLLRSGKSIRTVL 372

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score =  254 bits (650), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 146/379 (38%), Positives = 212/379 (55%), Gaps = 10/379 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KAL 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFK-- 126
           FP +LGHE                     IP F   C  C  C S   NLC     FK  
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120
Query: 127 -ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
            I   +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179
Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239
Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           G T+ +N +   DK V  +I ++T GG DY  +C G A  ++ A  C   GWG   V+G 
Sbjct: 240 GATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA 298
Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
                ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + FE
Sbjct: 299 KV--DEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFE 355
Query: 366 EINSAFDLLIKGKCLRCVI 384
            IN A DL+ +GK +R ++
Sbjct: 356 SINDAIDLMKEGKSIRTIL 374

>pdb|1HDY|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  253 bits (645), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 136/375 (36%), Positives = 205/375 (54%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +CH+D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICHTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPAS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  GK +R V+
Sbjct: 358 GFDLLHSGKSIRTVL 372

>pdb|1HDX|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  249 bits (637), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 204/375 (54%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPAS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  GK +R V+
Sbjct: 358 GFDLLHSGKSIRTVL 372

>pdb|1HDZ|A Chain A, Three-Dimensional Structures Of Three Human Alcohol Dehydrogenase Variants: Correlations With Their Functional Differences Length = 374

Iteration: 1
 Score =  249 bits (635), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 135/375 (36%), Positives = 204/375 (54%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICGTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPAS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  GK +R V+
Sbjct: 358 GFDLLHSGKSIRTVL 372

>pdb|1HTB|A Chain A, Crystallization Of Human Beta3 Alcohol Dehydrogenase (10 MgML) IN 100 MM SODIUM PHOSPHATE (PH 7.5), 7.5 MM NAD+ And 1 Mm 4-Iodopyrazole At 25 C Length = 374

Iteration: 1
 Score =  245 bits (626), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/375 (35%), Positives = 203/375 (54%), Gaps = 4/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I++V V PP ++EVR++++   +C +D       +    
Sbjct: 2   TAGKVIKCKAAVLWEVKKPFSIEDVEVAPPKAYEVRIKMVAVGICRTD-DHVVSGNLVTP 60
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P ILGHEA                    IP F   C +C  C++ + N C         
Sbjct: 61  LPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFTPQCGKCRVCKNPESNYCLKNDLGNPR 120
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D T RF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTLQDGTRRFT-CRGKPIHHFLGTSTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFSTG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G TE
Sbjct: 180 YGSAVNVAKVTPGSTCAVFGLGGVGLSAVMGCKAAGAARIIAVDINKDKFAKAKELGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV    
Sbjct: 240 CINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPPAS 298
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L +G+   G+++GG K+K  IP L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSINPM-LLLTGRTWKGAVYGGFKSKEGIPKLVADFMAKKFSLDALITHVLPFEKINE 357
Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  GK +  V+
Sbjct: 358 GFDLLHSGKSICTVL 372

>pdb|1HSO|A Chain A, Human Alpha Alcohol Dehydrogenase (Adh1a) Length = 374

Iteration: 1
 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/378 (35%), Positives = 205/378 (54%), Gaps = 8/378 (2%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSD--VTFWKMKDFP 67
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++   +C +D  V    M    
Sbjct: 2   TAGKVIKCKAAVLWELKKPFSIEEVEVAPPKAHEVRIKMVAVGICGTDDHVVSGTMV--- 58
Query: 68  AVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
              P ILGHEA                    IP  +  C +C  C++ + N C       
Sbjct: 59  TPLPVILGHEAAGIVESVGEGVTTVKPGDKVIPLAIPQCGKCRICKNPESNYCLKNDVSN 118
Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                +D TSRF   R + IHHF+ +S+FS+YTV+D   V K+D   P  + CL+ CG S
Sbjct: 119 PQGTLQDGTSRFT-CRRKPIHHFLGISTFSQYTVVDENAVAKIDAASPLEKVCLIGCGFS 177
Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           TG G+A   A V  GST  +FGLG +GL+   G +  GA RII VD+  +KF   K  G 
Sbjct: 178 TGYGSAVNVAKVTPGSTCAVFGLGGVGLSAIMGCKAAGAARIIAVDINKDKFAKAKELGA 237
Query: 248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 307
           TE +N ++   K + +++ +MTDGG D+ FE +G    +  +  CC +  G ++++GV  
Sbjct: 238 TECINPQDY-KKPIQEVLKEMTDGGVDFSFEVIGRLDTMMASLLCCHEACGTSVIVGVPP 296
Query: 308 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 367
               LS++   +L +G+   G++ GG K+K  +P L+  +M K+  LD  +TH + FE+I
Sbjct: 297 DSQNLSMNPM-LLLTGRTWKGAILGGFKSKECVPKLVADFMAKKFSLDALITHVLPFEKI 355
Query: 368 NSAFDLLIKGKCLRCVIW 385
           N  FDLL  GK +R ++ 
Sbjct: 356 NEGFDLLHSGKSIRTILM 373

>pdb|1P0C|A Chain A, Crystal Structure Of The Nadp(H)-Dependent Vertebrate Alcohol Dehydrogenase (Adh8) Length = 373

Iteration: 1
 Score =  241 bits (614), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 137/375 (36%), Positives = 207/375 (55%), Gaps = 6/375 (1%)
Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +  K +  P+ 
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLK-EIIPSK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+                   IP F+  C  C  C+S   N C         
Sbjct: 62  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 121
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG +TG
Sbjct: 122 GLMADMTSRF-TCRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPL-ESCLIGCGFATG 179
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF      G TE
Sbjct: 180 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE 239
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            +N K+  DK + ++I + T+GG DY  EC G    +  A      G G T+VLG+  P 
Sbjct: 240 CLNPKDY-DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASP- 297
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
           ++       +L +G+ L GS+FGG K + ++  L+  YM K++ ++  V+ ++  ++IN 
Sbjct: 298 NERLPLDPLLLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINK 356
Query: 370 AFDLLIKGKCLRCVI 384
           AF+LL  G+ +R ++
Sbjct: 357 AFELLSSGQGVRSIM 371

>pdb|1F8F|A Chain A, Crystal Structure Of Benzyl Alcohol Dehydrogenase From Acinetobacter Calcoaceticus Length = 371

Iteration: 1
 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 160/367 (43%), Gaps = 8/367 (2%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEA 78
           AA+    G    +  + +  P   EV V+++ T +CH+D+     K +P   P +LGHE 
Sbjct: 9   AAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQK-YPVPLPAVLGHEG 67
Query: 79  IXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAF-PFKISPWMPRDQTS 137
                               +  +   C +C  C +     CS F     S        +
Sbjct: 68  SGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHA 126
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
                +G    HF + SSF+ Y +    + VKV   VP      L CG+ TG GA     
Sbjct: 127 LCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAGACINAL 186
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
            V   S+ V +G G++GL+    A++CGA+ II VD++  + E+ K+ G T  +NSK   
Sbjct: 187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKT-- 244
Query: 258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF 317
            +     I ++TDGG ++  E  G   ++++         GK  V+G  Q G+       
Sbjct: 245 -QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGI-LGKIAVVGAPQLGTTAQFDVN 302
Query: 318 EVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG 377
           ++L  GK ++G + G    K  IP L++ Y   +   D+ V     F+EIN A     KG
Sbjct: 303 DLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKG 361
Query: 378 KCLRCVI 384
             L+ +I
Sbjct: 362 ITLKPII 368

>pdb|3MEQ|A Chain A, Crystal Structure Of Alcohol Dehydrogenase From Brucella Mel Length = 365

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 147/368 (39%), Gaps = 47/368 (12%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFPRI 73
           +AA+  A G+PL IDEV +  P   +++V I  + +CH+D+      W +K  P   P I
Sbjct: 27  KAAVVRAFGKPLTIDEVPIPQPGPGQIQVAIQASGVCHTDLHAAEGDWPVKPNP---PFI 83
Query: 74  LGHEAIX-XXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE +                    IP     C  C  C      LC            
Sbjct: 84  PGHEGVGFVSAVGSGVKHVKEGDRVGIPWLYTACGHCRHCLGGWETLCE----------- 132
Query: 133 RDQTSRFKDLRGETIHHFVSVS-SFSEYTVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGV 190
                       E ++   SV+  F+EY V D   V  +   +  N  A +L  GV+  V
Sbjct: 133 ------------EQLNTGYSVNGGFAEYVVADPNFVGHLPKNIDFNEIAPVLCAGVT--V 178
Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
               +  + + G  VVI G+G +G    + AR  G   +  VD+   K ++ +R G T  
Sbjct: 179 YKGLKVTDTKPGDWVVISGIGGLGHMAVQYARAMG-LNVAAVDIDDRKLDLARRLGATVT 237
Query: 251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 310
           VN+K   D +    I   TDGGA             ++A     +  G T+ L    PG 
Sbjct: 238 VNAKTVADPAA--YIRKETDGGAQGVLVTAVSPKAFEQALGMVAR--GGTVSLNGLPPGD 293
Query: 311 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
              LS F ++ +G  + GS+ G    + D+   L    D ++   K      K E+IN+ 
Sbjct: 294 -FPLSIFNMVLNGVTVRGSIVG---TRLDLQESLDFAADGKV---KATIQTGKLEDINAI 346
Query: 371 FDLLIKGK 378
           FD + +G 
Sbjct: 347 FDDMRQGN 354

>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From Thermotoga Maritima At 2.00 A Resolution Length = 380

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 151/383 (39%), Gaps = 33/383 (8%)
Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRIL 74
           ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P IL
Sbjct: 16  LKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIIL 75
Query: 75  GHEAIXXXXXXXXXXXXXXXXXXXIPHFLA-----DCTECVGCR-SKKGNLCSAFPFKIS 128
           GHE                         +       C EC  C+ SK+  LC   P +  
Sbjct: 76  GHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLC---PNRKV 132
Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHVVKVDPTVPPNRACLLSCGVS 187
             + R   S +  LRG           +S + VLD    V+KV      +   +  C  +
Sbjct: 133 YGINRG-CSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGA 181
Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           T   A         G TVVI G G +GL     AR  GA  +I +     + ++ +  G 
Sbjct: 182 TAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241
Query: 248 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
              +N +    +   + I+D+T G GAD+  E  G +  + E     R+G G   V GV 
Sbjct: 242 DLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVA 300
Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRY----MDKELELDKFVTHEM 362
            P   +    +E L    +L  + F G+   SD    +K       + +L L K +TH +
Sbjct: 301 VPQDPVPFKVYEWL----VLKNATFKGIWV-SDTSHFVKTVSITSRNYQL-LSKLITHRL 354
Query: 363 KFEEINSAFDLLIKGKCLRCVIW 385
             +E N A +L+   + L+ +++
Sbjct: 355 PLKEANKALELMESREALKVILY 377

>pdb|4EJ6|A Chain A, Crystal Structure Of A Putative Zinc-Binding Dehydrogenase (Target Psi-012003) From Sinorhizobium Meliloti 1021 Length = 370

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 80/348 (22%), Positives = 140/348 (40%), Gaps = 54/348 (15%)
Query: 31  IDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE--AIXXXXXXXXX 88
           +  V +  P   ++ V++    +C +D       +FP+  P  LGHE   I         
Sbjct: 37  VRNVGIPEPGPDDLLVKVEACGICGTDRHLLH-GEFPSTPPVTLGHEFCGIVVEAGSAVR 95
Query: 89  XXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148
                      P+    C  C  C++ + NLC                   ++LR   IH
Sbjct: 96  DIAPGARITGDPNI--SCGRCPQCQAGRVNLC-------------------RNLRAIGIH 134
Query: 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTV 205
                  F+EY ++      ++  T+ P        L+C +          + ++ GSTV
Sbjct: 135 RD---GGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCLH-----GVDLSGIKAGSTV 186
Query: 206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQII 265
            I G G IGL   + ARL GAT +I     + K  + +  G T  V+  + GD  V + I
Sbjct: 187 AILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVD-PSAGD--VVEAI 243
Query: 266 ---IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS 322
              + +  GG D   EC G+A  V+++    + G G  ++LGV   G ++ +  F++L  
Sbjct: 244 AGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFR 302
Query: 323 GKILMGSLFGGLKAKSDIPILLKRYMD----KELELDKFVTHEMKFEE 366
              ++GS           P + +R  D      +E+D+ ++  +  +E
Sbjct: 303 ELRVLGSFIN--------PFVHRRAADLVATGAIEIDRXISRRISLDE 342

>pdb|3S1L|A Chain A, Crystal Structure Of Apo-Form Furx Length = 340

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 142/373 (38%), Gaps = 59/373 (15%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFPRI 73
           +AA+  A G PL IDEV V  P   +V+V+I  + +CH+D+      W +K      P I
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVK---PTLPFI 60
Query: 74  LGHEAIXXXXXXXXXXXXXXXX-XXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE +                    +P   + C  C  C      LC            
Sbjct: 61  PGHEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLCE----------- 109
Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR------ACLLSCGV 186
           + Q + +    G           + EY V D  +V      + P++      A +L  GV
Sbjct: 110 KQQNTGYSVNGG-----------YGEYVVADPNYV-----GLLPDKVGFVEIAPILCAGV 153
Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
           +  V    +  +   G  VVI G+G +G    + AR  G  R+  VD+   K  + +R G
Sbjct: 154 T--VYKGLKVTDTRPGQWVVISGIGGLGHVAVQYARAMG-LRVAAVDIDDAKLNLARRLG 210
Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
               VN+++    +  Q  I    GGA              +A    R+  G TI L   
Sbjct: 211 AEVAVNARDTDPAAWLQKEI----GGAHGVLVTAVSPKAFSQAIGMVRR--GGTIALNGL 264
Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELD-KFVTHEMKFE 365
            PG       F+V+  G  + GS+ G    +SD    L+  +D     D K      K +
Sbjct: 265 PPGD-FGTPIFDVVLKGITIRGSIVG---TRSD----LQESLDFAAHGDVKATVSTAKLD 316
Query: 366 EINSAFDLLIKGK 378
           ++N  F  L +GK
Sbjct: 317 DVNDVFGRLREGK 329

>pdb|1RJW|A Chain A, Crystal Structure Of Nad(+)-Dependent Alcohol Dehydrogenase From Bacillus Stearothermophilus Strain Lld-R Length = 339

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 144/365 (39%), Gaps = 43/365 (11%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDL-HAAHGDWPVKPKLPLIPG 60
Query: 76  HEAIXXXXXXX-XXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +                    IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EH 108
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +    + G           ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 109 QKNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY--KA 156
Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
            +    + G  V I+G+G +G    + A+  G   ++ VD+  EK E+ K  G    VN 
Sbjct: 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNP 215
Query: 254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 313
                K  +   +    GG              Q AY   R+G G  +++G+  P  ++ 
Sbjct: 216 L----KEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--PPEEMP 268
Query: 314 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 373
           +  F+ + +G  ++GS+ G    + D+   L+   + ++   K +      E+IN  FD 
Sbjct: 269 IPIFDTVLNGIKIIGSIVG---TRKDLQEALQFAAEGKV---KTIIEVQPLEKINEVFDR 322
Query: 374 LIKGK 378
           ++KG+
Sbjct: 323 MLKGQ 327

>pdb|1LLU|A Chain A, The Ternary Complex Of Pseudomonas Aeruginosa Alcohol Dehydrogenase With Its Coenzyme And Weak Substrate Length = 342

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 145/370 (39%), Gaps = 45/370 (12%)
Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFP 71
           P   +AA+  A G PL I+EV V  P   +V V+I  + +CH+D+   +  D+P     P
Sbjct: 4   PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAE-GDWPVKPPLP 62
Query: 72  RILGHEAIXXXXXXXXXXXXXXXX-XXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            I GHE +                    IP     C  C  C +    LC +        
Sbjct: 63  FIPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCES-------- 114
Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP-PNRACLLSCGVSTG 189
               Q +    + G           ++EY + D  +V  +   V     A +L  GV+  
Sbjct: 115 ----QQNTGYSVNG----------GYAEYVLADPNYVGILPKNVEFAEIAPILCAGVTVY 160
Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G   +  N   G  V I G+G +G    + AR  G   +  +D+   K E+ ++ G + 
Sbjct: 161 KG--LKQTNARPGQWVAISGIGGLGHVAVQYARAMG-LHVAAIDIDDAKLELARKLGASL 217
Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN++   +  V  I  D+  GGA          S   +A    R+  G TI L V  P 
Sbjct: 218 TVNARQ--EDPVEAIQRDI--GGAHGVLVTAVSNSAFGQAIGMARR--GGTIAL-VGLPP 270
Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE-LDKFVTHEMKFEEIN 368
                  F+V+  G  + GS+ G    ++D    L+  +D   E L K   H  K ++IN
Sbjct: 271 GDFPTPIFDVVLKGLHIAGSIVG---TRAD----LQEALDFAGEGLVKATIHPGKLDDIN 323
Query: 369 SAFDLLIKGK 378
              D +  G+
Sbjct: 324 QILDQMRAGQ 333

>pdb|3PII|A Chain A, Crystal Structure Of Mutant Of Ht- Alcohol Dehydrogenase With Substrate Analogue Butyramide Length = 339

Iteration: 1
 Score = 68.2 bits (165), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 143/365 (39%), Gaps = 43/365 (11%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV--FPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDL-HAAHGDWPVKPKLPLIPG 60
Query: 76  HEAIXXXXXXX-XXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +                    IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC------------EH 108
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +    + G           ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 109 QKNAGYSVDG----------GYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTTY--KA 156
Query: 194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
            +    + G  V I+G+G  G    + A+  G   ++ VD+  EK E+ K  G    VN 
Sbjct: 157 LKVTGAKPGEWVAIYGIGGFGHVAVQYAKAMG-LNVVAVDIGDEKLELAKELGADLVVNP 215
Query: 254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 313
                K  +   +    GG              Q AY   R+G G  +++G+  P  ++ 
Sbjct: 216 L----KEDAAKFMKEKVGGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--PPEEMP 268
Query: 314 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 373
           +  F+ + +G  ++GS+ G    + D+   L+   + ++   K +      E+IN  FD 
Sbjct: 269 IPIFDTVLNGIKIIGSIVG---TRKDLQEALQFAAEGKV---KTIIEVQPLEKINEVFDR 322
Query: 374 LIKGK 378
           ++KG+
Sbjct: 323 MLKGQ 327

>pdb|1YKF|A Chain A, Nadp-Dependent Alcohol Dehydrogenase From Thermoanaerobium Brockii Length = 352

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 22/243 (9%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
           ++E+G+TV + G+G +GL    GA+L GA RII V       +  K +G T+ VN K   
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYK--- 219
Query: 258 DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 316
           D  +   I+++T+G G D      G A ++  A    + G G    +     G  L +  
Sbjct: 220 DGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLPVPR 278
Query: 317 FE----VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAF 371
            E    + H  K + G L  G + + +  I L  Y  K ++  K VTH  + F+ I  AF
Sbjct: 279 LEWGCGMAH--KTIKGGLCPGGRLRMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAF 334
Query: 372 DLL 374
            L+
Sbjct: 335 MLM 337

>pdb|2NVB|A Chain A, Contribution Of Pro275 To The Thermostability Of The Alcohol Dehydrogenases (Adhs) Length = 352

Iteration: 1
 Score = 65.5 bits (158), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 22/243 (9%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
           ++E+G+TV + G+G +GL    GA+L GA RII V       +  K +G T+ VN K   
Sbjct: 163 DIELGATVAVLGIGPVGLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYK--- 219
Query: 258 DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 316
           D  +   I+++T+G G D      G A ++  A    + G G    +     G  L +  
Sbjct: 220 DGPIESQIMNLTEGKGVDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLDVPR 278
Query: 317 FE----VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAF 371
            E    + H  K + G L  G + + +  I L  Y  K ++  K VTH  + F+ I  AF
Sbjct: 279 LEWGCGMAH--KTIKGGLCPGGRLRMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAF 334
Query: 372 DLL 374
            L+
Sbjct: 335 MLM 337

>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE BY EXCHANGE Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 106/217 (48%), Gaps = 14/217 (6%)
Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 221
           +++AH+ K    +P   A ++   ++TG   A   A++E+GS+VV+ G+G++GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGA 186
Query: 222 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV 280
           +L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G D      
Sbjct: 187 KLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIVDQVMKLTNGKGVDRVIMAG 243
Query: 281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL--KAKS 338
           G +  + +A    + G    I+  ++  GS  +L    V     +   ++ GGL    + 
Sbjct: 244 GGSETLSQAVKMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRL 300
Query: 339 DIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 374
            +  L+     K ++  K VTH  + F+ I  AF L+
Sbjct: 301 RMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By C. Beijerinckii Adh Length = 352

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 14/217 (6%)
Query: 162 LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGA 221
           +++AH+ K    +P   A ++   ++TG   A   A++++GS+VV+ G+G++GL    GA
Sbjct: 131 MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGIAGA 186
Query: 222 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV 280
           +L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G D      
Sbjct: 187 KLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIVDQVMKLTNGKGVDRVIMAG 243
Query: 281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL--KAKS 338
           G +  + +A +  + G    I+  ++  GS  +L    V     +   ++ GGL    + 
Sbjct: 244 GGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRL 300
Query: 339 DIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLL 374
            +  L+     K ++  K VTH  + F+ I  AF L+
Sbjct: 301 RMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLM 337

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 136/349 (38%), Gaps = 36/349 (10%)
Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHEAIXXXXXX 85
           L +++  +  P   EV +++    +C SDV ++   ++ DF    P ++GHEA       
Sbjct: 16  LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKV 75
Query: 86  XXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGE 145
                               C  C  C+  K NLC    F  +P  P D         G 
Sbjct: 76  GKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATP--PDD---------GN 124
Query: 146 TIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTV 205
              ++V  + F            K+   V      LL   +S GV  A R A V++G+TV
Sbjct: 125 LARYYVHAADFCH----------KLPDNVSLEEGALLE-PLSVGV-HACRRAGVQLGTTV 172
Query: 206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTEFVNSKNCGDKSVSQ 263
           ++ G G IGL     A+  GA  ++       + E+ K  G  VT  V+     + S+ +
Sbjct: 173 LVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIE 231
Query: 264 IIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG 323
            I        +   +C G    +       R G G  +++G+   GSQ+         + 
Sbjct: 232 RIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGM---GSQMVTVPLVNACAR 287
Query: 324 KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 372
           +I + S+F   +  +D PI L+        + + VTH  K E+   AF+
Sbjct: 288 EIDIKSVF---RYCNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFE 333

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/368 (20%), Positives = 143/368 (38%), Gaps = 36/368 (9%)
Query: 21  IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHE 77
           +   PG+ L ++   +  P  +EV +++    +C SDV +W   ++ DF    P +LGHE
Sbjct: 11  VVHGPGD-LRLENYPIPEPGPNEVLLKMHSVGICGSDVHYWQHGRIGDFVVKKPMVLGHE 69
Query: 78  AIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QT 136
           A                         A       C+  + NL     F  +P  P D   
Sbjct: 70  ASGTVVKVGSLVRHLQPGDRVAIQPGAPRQTDEFCKIGRYNLSPTIFFCATP--PDDGNL 127
Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            RF        +      +F E  +++                  LS G+      A R 
Sbjct: 128 CRFYKHNANFCYKLPDNVTFEEGALIEP-----------------LSVGIH-----ACRR 165
Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
           A V +G+ V++ G G IGL     A+  GA +++  D+ + +    K  G    +   N 
Sbjct: 166 AGVTLGNKVLVCGAGPIGLVNLLAAKAMGAAQVVVTDLSASRLSKAKEVGADFILEISNE 225
Query: 257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 316
             + +++ +  +     +   EC G+ + +Q        G G  +++G+   GS+  ++S
Sbjct: 226 SPEEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSG-GTLVLVGL---GSE--MTS 279
Query: 317 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 376
             ++H+    +  + G  +  +  P+ +     K + +   VTH    E+   AF+   K
Sbjct: 280 VPLVHAATREV-DIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPLEKALEAFETSKK 338
Query: 377 GKCLRCVI 384
           G  L+ +I
Sbjct: 339 GLGLKVMI 346

>pdb|2XAA|A Chain A, Alcohol Dehydrogenase Adh-'a' From Rhodococcus Ruber Dsm 44541 At Ph 8.5 In Complex With Nad And Butane-1,4-Diol Length = 345

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 102/267 (38%), Gaps = 26/267 (9%)
Query: 27  EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRILGHEAIXXXXX 84
           EP+V+D +    P   E+ +++    LCHSD+    M    +    P  LGHE +     
Sbjct: 12  EPVVVD-IPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAE 70
Query: 85  XXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRG 144
                           +    C  C  C   + N C+                R  DL G
Sbjct: 71  LGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCT----------------RAADL-G 113
Query: 145 ETIHHFVSVSSFSEYTVLDIA-HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGS 203
            T     S  S +EY ++D A H+V +    P   A L   G++     +     +  GS
Sbjct: 114 ITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISRVLPLLGPGS 173
Query: 204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQ 263
           T V+ G+G +G    +  R   A R+I VD+  ++  + +  G    V S        + 
Sbjct: 174 TAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSG----AGAAD 229
Query: 264 IIIDMTDG-GADYCFECVGLASLVQEA 289
            I ++T G GA   F+ VG  S +  A
Sbjct: 230 AIRELTGGQGATAVFDFVGAQSTIDTA 256

>pdb|3FPL|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-295 Of C. Beijerinckii Adh By T. Brockii Adh Length = 351

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 109/231 (47%), Gaps = 18/231 (7%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+G+TV + G+G +
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIELGATVAVLGIGPV 178
Query: 214 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 272
           GL    GA+L GA RII V       +  K +G T+ VN K   D  +   I+++T+G G
Sbjct: 179 GLMAVAGAKLRGAGRIIAVGSRPVCVDAAKYYGATDIVNYK---DGPIESQIMNLTEGKG 235
Query: 273 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE----VLHSGKILMG 328
            D      G A ++  A    + G G    +     G  L +   E    + H  K + G
Sbjct: 236 VDAAIIAGGNADIMATAVKIVKPG-GTIANVNYFGEGEVLPVPRLEWGCGMAH--KTIKG 292
Query: 329 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 378
            L  G + +++  +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAE--MLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|2B83|A Chain A, A Single Amino Acid Substitution In The Clostridium Beijerinckii Alcohol Dehydrogenase Is Critical For Thermostabilization Length = 351

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 143/344 (41%), Gaps = 33/344 (9%)
Query: 41  SHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIP 100
           S++  VR +  S C SD+              ILGHEA+                   I 
Sbjct: 24  SYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGDRVI- 82
Query: 101 HFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYT 160
                   C     +   + + FP   +  +   + S FKD              F EY 
Sbjct: 83  ------VPCTTPDWRSLEVQAGFPQHSNGMLAGWKFSNFKD------------GVFGEYF 124
Query: 161 VLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA 218
            ++ A  ++  +   +P   A +++  ++TG   A   A++++GS+VV+ G+G++GL   
Sbjct: 125 HVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAVGLMGI 183
Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF 277
            GA+L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G D   
Sbjct: 184 AGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIVDQVMKLTNGKGVDRVI 240
Query: 278 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL--K 335
              G +  + +A +  + G    I+  ++  GS  +L    V     +   ++ GGL   
Sbjct: 241 MAGGGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPG 297
Query: 336 AKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 378
            +    +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 298 GRLRAEMLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|2H6E|A Chain A, Crystal Structure Of The D-Arabinose Dehydrogenase From Sulfolobus Solfataricus Length = 344

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 153/379 (40%), Gaps = 58/379 (15%)
Query: 15  IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF--PR 72
           ++ +AA+     EPL I++V +  P   EV +RI    +C +D+  WK  +    F  P 
Sbjct: 2   VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPI 61
Query: 73  ILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           ILGHE                     +     D T C  CR  K N+C     +I P   
Sbjct: 62  ILGHENAGTIVEVGELAKVKKGDNVVVYATWGDLT-CRYCREGKFNICKN---QIIP--- 114
Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVSTGVG 191
                      G+T +       FSEY ++  +  +VK++   P   A L   G +T +G
Sbjct: 115 -----------GQTTN-----GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAG-TTSMG 157
Query: 192 AAWRTANVEVGS----TVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFG 246
           A  R A   +       V++ G+G + +   +  + L     I+G+    +  +     G
Sbjct: 158 AI-RQALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELG 216
Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
             ++V+      K    +I  +TDG GA    + VG             +  G  I++G+
Sbjct: 217 -ADYVSEM----KDAESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQ-EGAIILVGM 270
Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPIL-----LKRYMDKELELDKFVTH 360
           +  G ++SL +F+     K L+GS +G L    D+  L     +K Y+ K          
Sbjct: 271 E--GKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVRLSESGKIKPYIIK---------- 318
Query: 361 EMKFEEINSAFDLLIKGKC 379
            +  ++IN AF  L +G+ 
Sbjct: 319 -VPLDDINKAFTNLDEGRV 336

>pdb|1PED|A Chain A, Bacterial Secondary Alcohol Dehydrogenase (Apo-Form) Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 111/229 (48%), Gaps = 14/229 (6%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++++GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIQMGSSVVVIGIGAV 178
Query: 214 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 272
           GL    GA+L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIVDQVMKLTNGKG 235
Query: 273 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 332
            D      G +  + +A +  + G    I+  ++  GS  +L    V     +   ++ G
Sbjct: 236 VDRVIMAGGGSETLSQAVSMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKG 292
Query: 333 GL--KAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 378
           GL    +    +L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAEMLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 149/375 (39%), Gaps = 41/375 (10%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILG 75
           A   T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I G
Sbjct: 6   AIXKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXG 65
Query: 76  HEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE                            C +C  CR  + ++C              Q
Sbjct: 66  HEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVC--------------Q 111
Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
            ++   +  + +        F+EY V+   ++ K   ++PP  A L        +G A  
Sbjct: 112 NTKIFGVDTDGV--------FAEYAVVPAQNIWKNPKSIPPEYATL-----QEPLGNAVD 158
Query: 196 T--ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
           T  A    G +V+I G G +GL     A+  GA  +I  +    + E+ K+ G    +N 
Sbjct: 159 TVLAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINP 218
Query: 254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 312
               ++ V + + D+TDG G D   E  G    +++         G+  +LG+  PG ++
Sbjct: 219 F---EEDVVKEVXDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGL-YPG-KV 272
Query: 313 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAF 371
           ++  F  L   K L      G         + +     +L LD  +TH+ K F++   AF
Sbjct: 273 TI-DFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAF 331
Query: 372 DLLIKGKCLRCVIWM 386
           +L   GK  + V  +
Sbjct: 332 ELXRAGKTGKVVFXL 346

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 149/375 (39%), Gaps = 41/375 (10%)
Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILG 75
           A   T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I G
Sbjct: 7   AIXKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIXG 66
Query: 76  HEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE                            C +C  CR  + ++C              Q
Sbjct: 67  HEVAGEVVEIGPGVEGIEVGDYVSVETHIVCGKCYACRRGQYHVC--------------Q 112
Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
            ++   +  + +        F+EY V+   ++ K   ++PP  A L        +G A  
Sbjct: 113 NTKIFGVDTDGV--------FAEYAVVPAQNIWKNPKSIPPEYATL-----QEPLGNAVD 159
Query: 196 T--ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS 253
           T  A    G +V+I G G +GL     A+  GA  +I  +    + E+ K+ G    +N 
Sbjct: 160 TVLAGPISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINP 219
Query: 254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL 312
               ++ V + + D+TDG G D   E  G    +++         G+  +LG+  PG ++
Sbjct: 220 F---EEDVVKEVXDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGL-YPG-KV 273
Query: 313 SLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAF 371
           ++  F  L   K L      G         + +     +L LD  +TH+ K F++   AF
Sbjct: 274 TI-DFNNLIIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAF 332
Query: 372 DLLIKGKCLRCVIWM 386
           +L   GK  + V  +
Sbjct: 333 ELXRAGKTGKVVFXL 347

>pdb|1JQB|A Chain A, Alcohol Dehydrogenase From Clostridium Beijerinckii: Crystal Structure Of Mutant With Enhanced Thermal Stability Length = 351

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 109/229 (47%), Gaps = 14/229 (6%)
Query: 156 FSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSI 213
           F EY  ++ A  ++  +   +P   A +++  ++TG   A   A++E+GS+VV+ G+G++
Sbjct: 120 FGEYFHVNDADMNLAILPKDMPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAV 178
Query: 214 GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-G 272
           GL    GA+L GA RIIGV       E  K +G T+ +N KN     +   ++ +T+G G
Sbjct: 179 GLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNG---HIEDQVMKLTNGKG 235
Query: 273 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 332
            D      G +  + +A    + G    I+  ++  GS  +L    V     +   ++ G
Sbjct: 236 VDRVIMAGGGSETLSQAVKMVKPG---GIISNINYHGSGDALLIPRVEWGCGMAHKTIKG 292
Query: 333 GL--KAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK 378
           GL    +     L    +   ++L K VTH    F+ I  A  LL+K K
Sbjct: 293 GLCPGGRLRAERLRDMVVYNRVDLSKLVTHVYHGFDHIEEAL-LLMKDK 340

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 74/368 (20%), Positives = 140/368 (38%), Gaps = 36/368 (9%)
Query: 21  IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHE 77
           +   PG+ L ++   +  P  +EV +R+    +C SDV +W   ++ +F    P +LGHE
Sbjct: 12  VVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHE 70
Query: 78  AIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QT 136
           A                         A       C+  + NL  +  F  +P  P D   
Sbjct: 71  ASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATP--PDDGNL 128
Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            RF        +      +F E  +++                  LS G+      A R 
Sbjct: 129 CRFYKHNAAFCYKLPDNVTFEEGALIEP-----------------LSVGIH-----ACRR 166
Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
             V +G  V++ G G IG+     A+  GA +++  D+ + +    K  G    +     
Sbjct: 167 GGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 226
Query: 257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 316
             + +++ +        +   EC G  + +Q      R G G  +++G+   GS+  +++
Sbjct: 227 SPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL---GSE--MTT 280
Query: 317 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 376
             +LH+  I    + G  +  +  P+ +     K + +   VTH    E+   AF+   K
Sbjct: 281 VPLLHAA-IREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKK 339
Query: 377 GKCLRCVI 384
           G  L+ ++
Sbjct: 340 GLGLKIML 347

>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In Complex With Cacodylate Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 19/232 (8%)
Query: 154 SSFSEYTVLDIAHVVKVDPT-------VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVV 206
           S+F +    ++ HV + D         + P  A +LS  V+TG   A   AN+++G TV 
Sbjct: 113 SNFKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGA-ELANIKLGDTVC 171
Query: 207 IFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIII 266
           + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN GD  + + I+
Sbjct: 172 VIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-GD--IVEQIL 228
Query: 267 DMTDG-GADYCFECVGLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSLSSFEVLHSG 323
             TDG G D      G      +A    + G   G    LG +     +  S + V    
Sbjct: 229 KATDGKGVDKVVIAGGXVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIDIPRSEWGVGMGH 287
Query: 324 KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 375
           K + G L  G + +  +  L       +L+  K +TH  +FE +    D L+
Sbjct: 288 KHIHGGLTPGGRVR--MEKLASLISTGKLDTSKLITH--RFEGLEKVEDALM 335

>pdb|3FPC|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The Cofactor Binding Domain Res 153-294 Of T. Brockii Adh By E. Histolytica Adh Length = 352

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 107/241 (44%), Gaps = 18/241 (7%)
Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
           +F +++      F  V+       +++AH+ K    +P   A ++   ++TG   A   A
Sbjct: 111 KFSNVKDGVFGEFFHVNDAD----MNLAHLPK---EIPLEAAVMIPDMMTTGFHGA-ELA 162
Query: 198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG 257
           N+++G TV + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN G
Sbjct: 163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-G 221
Query: 258 DKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSL 314
           D  + + I+  TDG G D      G      +A    + G   G    LG +     +  
Sbjct: 222 D--IVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIDIPR 278
Query: 315 SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDL 373
           S + V    K + G L  G + + +  I L  Y  K ++  K VTH  + F+ I  AF L
Sbjct: 279 SEWGVGMGHKHIHGGLCPGGRLRMERLIDLVFY--KRVDPSKLVTHVFRGFDNIEKAFML 336
Query: 374 L 374
           +
Sbjct: 337 M 337

>pdb|1H2B|A Chain A, Crystal Structure Of The Alcohol Dehydrogenase From The Hyperthermophilic Archaeon Aeropyrum Pernix At 1.65a Resolution Length = 359

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 89/399 (22%), Positives = 155/399 (38%), Gaps = 57/399 (14%)
Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPN---SHEVRVRIICTSLCHSD 57
           M IE+  +++ G   + +AA      +PL I++V  D P      +V VRI    +CH+D
Sbjct: 1   MRIEQDFSQSLGVE-RLKAARLHEYNKPLRIEDV--DYPRLEGRFDVIVRIAGAGVCHTD 57
Query: 58  VTF----WKMKDFPAVFPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCR 113
           +      W     P   P  LGHE +                   I H       C+ CR
Sbjct: 58  LHLVQGMWHELLQPK-LPYTLGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACR 116
Query: 114 SKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT 173
           + +   C    F   P +  D                     F+E+       V+K+   
Sbjct: 117 AGEDMHCENLEF---PGLNID-------------------GGFAEFMRTSHRSVIKLPKD 154
Query: 174 VPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRI 229
           +   +    A L   G++           +  G+ V I G+G +G    +  ++     +
Sbjct: 155 ISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATV 214
Query: 230 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQE 288
           I +DV  EK ++ +R G    V+++    K V    +++T G G +   + VG  + V  
Sbjct: 215 IALDVKEEKLKLAERLGADHVVDARRDPVKQV----MELTRGRGVNVAMDFVGSQATVDY 270
Query: 289 A-YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG-LKAKSDIPILLKR 346
             Y   R   G+ I++G    G +L   +  V+ S     GSL G  ++    + + L+ 
Sbjct: 271 TPYLLGR--MGRLIIVGY---GGELRFPTIRVISSEVSFEGSLVGNYVELHELVTLALQG 325
Query: 347 YMDKELELDKFVTHEMKFEEINSAFDLLIKGKCL-RCVI 384
            +  E+++        K +EIN   + L KG+ L R V+
Sbjct: 326 KVRVEVDIH-------KLDEINDVLERLEKGEVLGRAVL 357

>pdb|2EER|A Chain A, Structural Study Of Project Id St2577 From Sulfolobus Tokodaii Strain7 Length = 347

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 146/363 (40%), Gaps = 52/363 (14%)
Query: 26  GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAVFPRILGHE 77
           G+PL ++++ +  P   +V ++I    +CHSDV   +        ++D     P  LGHE
Sbjct: 10  GKPLKLEDIPIPKPKGSQVLIKIEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHE 69
Query: 78  AIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP-WMPRDQT 136
                                  +       C  CR  + +LC       SP W+  +  
Sbjct: 70  IAGRIEEVGDEVVGYSKGDLVAVNPWEGEGNCYYCRIGEEHLCD------SPRWLGINYD 123
Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAWR 195
             + +        +V V  +     L     V+  P         L+C GV+T    A R
Sbjct: 124 GAYAE--------YVLVPHYKYLYKLRRLSAVEAAP---------LTCSGVTTY--RAVR 164
Query: 196 TANVEVGSTVVIFG----LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
            A+++   T+V+ G    LG++ + +A+   + GAT IIGVDV  E  E  KR G    +
Sbjct: 165 KASLDPSKTLVVIGAGGGLGTMAIQIAKA--VSGAT-IIGVDVREEALEAAKRAGADYVI 221
Query: 252 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 311
           N+ +     VS+I       GAD   + +  +      Y       GK +++G+   G+ 
Sbjct: 222 NASS--QDPVSEIRRITQGKGADAVID-LNNSEKTLSIYPYVLAKQGKYVMVGLF--GAD 276
Query: 312 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 371
           L   +  +  +    +GSL G    +SD   ++   + +  ++   VT  MK EE N A 
Sbjct: 277 LKYHAPLITLNEVQFIGSLVGN---QSDFLGIMS--LAEAGKVKPMVTKTMKLEEANEAI 331
Query: 372 DLL 374
           D L
Sbjct: 332 DNL 334

>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa Entamoeba Histolytica Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 100/232 (43%), Gaps = 19/232 (8%)
Query: 154 SSFSEYTVLDIAHVVKVDPT-------VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVV 206
           S+F +    ++ HV + D         + P  A +LS  V+TG   A   AN+++G TV 
Sbjct: 113 SNFKDGVFSEVFHVNEADANLALLPRDIKPEDAVMLSDMVTTGFHGA-ELANIKLGDTVC 171
Query: 207 IFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIII 266
           + G+G +GL    GA   GA RI  V       +I   +G T+ +N KN GD  + + I+
Sbjct: 172 VIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKN-GD--IVEQIL 228
Query: 267 DMTDG-GADYCFECVGLASLVQEAYACCRKG--WGKTIVLGVDQPGSQLSLSSFEVLHSG 323
             TDG G D      G      +A    + G   G    LG +     +  S + V    
Sbjct: 229 KATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLG-EGDNIPIPRSEWGVGMGH 287
Query: 324 KILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI 375
           K + G L  G + +  +  L       +L+  K +TH  +FE +    D L+
Sbjct: 288 KHIHGGLTPGGRVR--MEKLASLISTGKLDTSKLITH--RFEGLEKVEDALM 335

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 80/381 (20%), Positives = 147/381 (38%), Gaps = 49/381 (12%)
Query: 16  QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PR 72
           + +A + T P     + EV V  P   EV ++++ TS+C +D+  ++  ++       P+
Sbjct: 4   KMQAIMKTKPAYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQ 63
Query: 73  ILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           I+GHE                            C +C  C+  + ++C            
Sbjct: 64  IMGHEVAGEVVEVGPGVEDLQVGDYISVETHIVCGKCYACKHNRYHVCQ----------- 112
Query: 133 RDQTSRFK-DLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
              T  F  D+ G           F+ Y ++   +  K    +PP  A L        +G
Sbjct: 113 --NTKIFGVDMDG----------VFAHYAIVPAKNAWKNPKDMPPEYAAL-----QEPLG 155
Query: 192 AAWRT--ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            A  T  A    G + +I G G +GL     A+  GA  +I  +    + ++ K+ G   
Sbjct: 156 NAVDTVLAGPIAGRSTLITGAGPLGLLGIAVAKASGAYPVIVSEPSEFRRKLAKKVGADY 215
Query: 250 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
            VN     ++   + ++D+TDG G +   E  G    +++       G G+  +LG+   
Sbjct: 216 VVNPF---EEDPVKFVMDITDGAGVEVFLEFSGAPKALEQGLKAVTPG-GRVSLLGLFPR 271
Query: 309 GSQLSLSS---FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-F 364
              +  ++   F+ L    I    L+      S +          +L LD  +TH+ K F
Sbjct: 272 EVTIDFNNLIIFKALEVHGITGRHLWETWYTVSSL------IQSGKLNLDPIITHKYKGF 325
Query: 365 EEINSAFDLLIKGKCLRCVIW 385
           ++   AF+L+  GK  + V +
Sbjct: 326 DKFEEAFELMRAGKTGKVVFF 346

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 74/365 (20%), Positives = 135/365 (36%), Gaps = 36/365 (9%)
Query: 21  IATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFW---KMKDFPAVFPRILGHE 77
           +   PG+ L ++   +  P  +EV +R     +C SDV +W   ++ +F    P +LGHE
Sbjct: 12  VVHGPGD-LRLENYPIPEPGPNEVLLRXHSVGICGSDVHYWEYGRIGNFIVKKPXVLGHE 70
Query: 78  AIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD-QT 136
           A                         A       C+  + NL  +  F  +P  P D   
Sbjct: 71  ASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKXGRYNLSPSIFFCATP--PDDGNL 128
Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
            RF        +      +F E  +++                  LS G+      A R 
Sbjct: 129 CRFYKHNAAFCYKLPDNVTFEEGALIEP-----------------LSVGIH-----ACRR 166
Query: 197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC 256
             V +G  V++ G G IG      A+  GA +++  D+ + +    K  G    +     
Sbjct: 167 GGVTLGHKVLVCGAGPIGXVTLLVAKAXGAAQVVVTDLSATRLSKAKEIGADLVLQISKE 226
Query: 257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS 316
             + +++ +        +   EC G  + +Q      R G G  +++G+   GS+ +  +
Sbjct: 227 SPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGL---GSEXT--T 280
Query: 317 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK 376
             +LH+  I    + G  +  +  P+ +     K + +   VTH    E+   AF+   K
Sbjct: 281 VPLLHAA-IREVDIKGVFRYCNTWPVAISXLASKSVNVKPLVTHRFPLEKALEAFETFKK 339
Query: 377 GKCLR 381
           G  L+
Sbjct: 340 GLGLK 344

>pdb|4EEZ|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Variant Re1 Length = 348

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 130/330 (39%), Gaps = 42/330 (12%)
Query: 53  LCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXXXXXXXX-XXXXIPHFLADCTECVG 111
           +CH+D+      DF      +LGHE I                    +  F   C  C  
Sbjct: 38  VCHTDLHV-AAGDFGNKAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEY 96
Query: 112 CRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171
           C S     C            R+  +    + G      + V+ ++          VKV 
Sbjct: 97  CVSGNETFC------------REVKNAGYSVDGGMAEEAIVVADYA----------VKVP 134
Query: 172 PTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRI 229
             + P  A  ++C GV+T    A + + V+ G   VIFG G +G LA+     + GA ++
Sbjct: 135 DGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGA-KV 191
Query: 230 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQE 288
           I VD+  +K  + K+ G    +NS   GD +    I  +T G G      C  +A +  E
Sbjct: 192 IAVDINQDKLNLAKKIGADVTINS---GDVNPVDEIKKITGGLGVQSAIVCA-VARIAFE 247
Query: 289 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYM 348
                 K  GK + + V  P ++++LS   V+  G  + GSL G    + D+    +   
Sbjct: 248 QAVASLKPMGKMVAVAV--PNTEMTLSVPTVVFDGVEVAGSLVG---TRLDLAEAFQFGA 302
Query: 349 DKELELDKFVTHEMKFEEINSAFDLLIKGK 378
           + ++   K +    K EEIN   D +  GK
Sbjct: 303 EGKV---KPIVATRKLEEINDIIDEMKAGK 329

>pdb|4EEX|A Chain A, Crystal Structure Of Lactococcus Lactis Alcohol Dehydrogenase Length = 348

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 130/330 (39%), Gaps = 42/330 (12%)
Query: 53  LCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXXXXXXXX-XXXXIPHFLADCTECVG 111
           +CH+D+      D+      +LGHE I                    +  F   C  C  
Sbjct: 38  VCHTDLHV-AAGDYGNKAGTVLGHEGIGIVKEIGADVSSLQVGDRVSVAWFFEGCGHCEY 96
Query: 112 CRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD 171
           C S     C            R+  +    + G      + V+ ++          VKV 
Sbjct: 97  CVSGNETFC------------REVKNAGYSVDGGMAEEAIVVADYA----------VKVP 134
Query: 172 PTVPPNRACLLSC-GVSTGVGAAWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRI 229
             + P  A  ++C GV+T    A + + V+ G   VIFG G +G LA+     + GA ++
Sbjct: 135 DGLDPIEASSITCAGVTTY--KAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGA-KV 191
Query: 230 IGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQE 288
           I VD+  +K  + K+ G    +NS   GD +    I  +T G G      C  +A +  E
Sbjct: 192 IAVDINQDKLNLAKKIGADVIINS---GDVNPVDEIKKITGGLGVQSAIVCA-VARIAFE 247
Query: 289 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYM 348
                 K  GK + + +  P ++++LS   V+  G  + GSL G    + D+    +   
Sbjct: 248 QAVASLKPMGKMVAVAL--PNTEMTLSVPTVVFDGVEVAGSLVG---TRLDLAEAFQFGA 302
Query: 349 DKELELDKFVTHEMKFEEINSAFDLLIKGK 378
           + ++   K +    K EEIN   D +  GK
Sbjct: 303 EGKV---KPIVATRKLEEINDIIDEMKAGK 329

>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase (rspb) From E. Coli Cft073 (efi Target Efi-506413) Complexed With Cofactor Nadh Length = 359

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 75/371 (20%), Positives = 134/371 (36%), Gaps = 54/371 (14%)
Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIXXXXXXXXX 88
           L I E  +  P++ EVRV++    +C SD   ++  +  A +PR++GHE           
Sbjct: 32  LSIIEREIPTPSAGEVRVKVKLAGICGSDSHIYRGHNPFAKYPRVIGHEFFGVIDAVGEG 91
Query: 89  XXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIH 148
                         +  C  C  C   K N+C+                    L    +H
Sbjct: 92  VESARVGERVAVDPVVSCGHCYPCSIGKPNVCTT-------------------LAVLGVH 132
Query: 149 HFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS--CGVSTGVGAAWRTANVEVGSTVV 206
              +   FSEY V+   +  K+   V    A ++      +   G    T N     TV+
Sbjct: 133 ---ADGGFSEYAVVPAKNAWKIPEAVADQYAVMIEPFTIAANVTGHGQPTEN----DTVL 185
Query: 207 IFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC------GDK 259
           ++G G IGL + +  + +     +I  D I E+ E  K  G    +N+          +K
Sbjct: 186 VYGAGPIGLTIVQVLKGVYNVKNVIVADRIDERLEKAKESGADWAINNSQTPLGESFAEK 245
Query: 260 SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV 319
            +   +I           E V LAS              + +++G     S++       
Sbjct: 246 GIKPTLIIDAACHPSILKEAVTLASPA-----------ARIVLMGFSSEPSEVIQQGI-- 292
Query: 320 LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL--LIKG 377
             +GK L  S+F      +  P+++       ++ +K +TH   F+ +  A  L  L + 
Sbjct: 293 --TGKEL--SIFSSRLNANKFPVVIDWLSKGLIKPEKLITHTFDFQHVADAISLFELDQK 348
Query: 378 KCLRCVIWMGE 388
            C + ++   E
Sbjct: 349 HCCKVLLTFSE 359

>pdb|4A2C|A Chain A, Crystal Structure Of Galactitol-1-Phosphate Dehydrogenase From Escherichia Coli Length = 346

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 76/360 (21%), Positives = 124/360 (34%), Gaps = 63/360 (17%)
Query: 30  VIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE--AIXXXXXXXX 87
           V + VI +  +  EVRV+I  + LC SD+     K+    +P  LGHE            
Sbjct: 14  VAESVIPEIKHQDEVRVKIASSGLCGSDLPRI-FKNGAHYYPITLGHEFSGYIDAVGSGV 72
Query: 88  XXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI 147
                      +P  L  C  C  C     + C+ + F  S    RD             
Sbjct: 73  DDLHPGDAVACVP--LLPCFTCPECLKGFYSQCAKYDFIGSR---RD------------- 114
Query: 148 HHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI 207
                   F+EY V+   +V  +   +P      +   ++ G+ A       E    V+I
Sbjct: 115 ------GGFAEYIVVKRKNVFALPTDMPIEDGAFIEP-ITVGLHAFHLAQGCE-NKNVII 166
Query: 208 FGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID 267
            G G+IGL   + A   GA  +  +D+ SEK  + K FG  +  NS       +  ++ +
Sbjct: 167 IGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRE 226
Query: 268 MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM 327
           +                L+ E       G  +T+ L V+  G    L+    LH    L 
Sbjct: 227 LR------------FNQLILET-----AGVPQTVELAVEIAGPHAQLALVGTLHQDLHLT 269
Query: 328 GSLFGGLKAK-----------------SDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
            + FG +  K                  +     +   +++L L+  + H   FE    A
Sbjct: 270 SATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQA 329

>pdb|3I4C|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Adh(Ssadh) Double Mutant (W95l,N249y) Length = 347

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 142/368 (38%), Gaps = 46/368 (12%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE                       + L     C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPLQGEGNCYYCRIGEEHLCDS------- 114
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
             PR     F     E    +V V  +     L   + V+  P         L+C G++T
Sbjct: 115 --PRWLGINFDGAYAE----YVIVPHYKYMYKLRRLNAVEAAP---------LTCSGITT 159
Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
               A R A+++   T+++ G G     +AV     + GAT IIGVDV  E  E  KR G
Sbjct: 160 --YRAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVEAAKRAG 216
Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
               +N+       +++I       G D   + +  +      Y       GK +++G+ 
Sbjct: 217 ADYVINASM--QDPLAEIRRITESKGVDAVID-LNYSEKTLSVYPKALAKQGKYVMVGLF 273
Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
             G+ L   +  +  S    +GSL G    +SD   +++  + +  ++   +T  MK EE
Sbjct: 274 --GADLHYHAPLITLSEIQFVGSLVGN---QSDFLGIMR--LAEAGKVKPMITKTMKLEE 326
Query: 367 INSAFDLL 374
            N A D L
Sbjct: 327 ANEAIDNL 334

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 77/381 (20%), Positives = 137/381 (35%), Gaps = 57/381 (14%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA---VFPRIL 74
           RA    AP E L + +  V  P   E+ VR+   S+C +D+  WK   +       P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61
Query: 75  GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGC---RSKKGNLCSAFPFKISPWM 131
           GHE                          +   E VG    R + G+  S     +    
Sbjct: 62  GHE-------------------------FSGVVEAVGPGVRRPQVGDHVSLESHIVCHAC 96
Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
           P  +T  +       I        F+EY V+  A    V+P   P     +       V 
Sbjct: 97  PACRTGNYHVCLNTQILGVDRDGGFAEYVVVP-AENAWVNPKDLPFEVAAILEPFGNAVH 155
Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
             +  + V  G +V+I G G IGL  A   R  GA  I+  D    +    + +     V
Sbjct: 156 TVYAGSGVS-GKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLV 213
Query: 252 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 311
           N     ++ + +++  +T  G +   E  G  + + +       G G+  +LG+     +
Sbjct: 214 NPL---EEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPSDPIR 269
Query: 312 LSLSSFEVLHSGKILMGSLFG-GLKAKSDIPILLKRYMD-------KELELDKFVTHEMK 363
             L       +G+++M  +   G+  +     L + +M          ++L   +TH + 
Sbjct: 270 FDL-------AGELVMRGITAFGIAGRR----LWQTWMQGTALVYSGRVDLSPLLTHRLP 318
Query: 364 FEEINSAFDLLIKGKCLRCVI 384
                 AF LL  G+ ++ ++
Sbjct: 319 LSRYREAFGLLASGQAVKVIL 339

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/336 (21%), Positives = 121/336 (36%), Gaps = 38/336 (11%)
Query: 43  EVRVRIICTSLCHSDVTFWKMKDF-PAVFP--RILGHEAIXXXXXXXXXXXXXXXXXXXI 99
           EV V +  T +C SDV FWK     P +     +LGHE+                     
Sbjct: 42  EVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAGEVIAVHPSVKSIKVGDRVA 101
Query: 100 PHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEY 159
                 C  C  C + + N C    F  +P +P              +  +V+  +   +
Sbjct: 102 IEPQVICNACEPCLTGRYNGCERVDFLSTPPVPG------------LLRRYVNHPAVWCH 149
Query: 160 TVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAE 219
            + ++++          N A L    V+    A  + A V +G  V+I G G IGL    
Sbjct: 150 KIGNMSY---------ENGAMLEPLSVAL---AGLQRAGVRLGDPVLICGAGPIGLITML 197
Query: 220 GARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN---CGDKSVSQIIIDMTDGGADYC 276
            A+  GA  ++  D+   + +  K     E V  K      ++S  +I+           
Sbjct: 198 CAKAAGACPLVITDIDEGRLKFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVA 256
Query: 277 FECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA 336
            EC G+ S +  A    + G GK  V+GV +   Q+      V          L    + 
Sbjct: 257 LECTGVESSIAAAIWAVKFG-GKVFVIGVGKNEIQIPFMRASVREV------DLQFQYRY 309
Query: 337 KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFD 372
            +  P  ++   +  ++L + VTH    E+   AF+
Sbjct: 310 CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFE 345

>pdb|2EIH|A Chain A, Crystal Structure Of Nad-Dependent Alcohol Dehydrogenase Length = 343

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 93/243 (38%), Gaps = 35/243 (14%)
Query: 18  RAAIATAPGEPLVID--EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV-FPRIL 74
           RA +  A G P V++  ++ V  P   EVRVR+   +L H DV   K    P +  P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61
Query: 75  GHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +                     + +    C  C  C + + NLC           PR 
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLC-----------PRY 110
Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
           Q      + GE  H      +++EY VL  A++       P N +   +  +      AW
Sbjct: 111 Q------ILGEHRH-----GTYAEYVVLPEANLA----PKPKNLSFEEAAAIPLTFLTAW 155
Query: 195 RTA----NVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
           +       V  G  V++   GS + +A  + A+L GA R+I      +K    K  G  E
Sbjct: 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADE 214
Query: 250 FVN 252
            VN
Sbjct: 215 TVN 217

>pdb|1NTO|A Chain A, N249y Mutant Of Alcohol Dehydrogenase From The Archaeon Sulfolobus Solfataricus-Monoclinic Crystal Form Length = 347

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 141/368 (38%), Gaps = 46/368 (12%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE                       +       C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDS------- 114
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
             PR     F     E    +V V  +     L   + V+  P         L+C G++T
Sbjct: 115 --PRWLGINFDGAYAE----YVIVPHYKYMYKLRRLNAVEAAP---------LTCSGITT 159
Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
               A R A+++   T+++ G G     +AV     + GAT IIGVDV  E  E  KR G
Sbjct: 160 Y--RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVEAAKRAG 216
Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
               +N+       +++I       G D   + +  +      Y       GK +++G+ 
Sbjct: 217 ADYVINASM--QDPLAEIRRITESKGVDAVID-LNYSEKTLSVYPKALAKQGKYVMVGLF 273
Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
             G+ L   +  +  S    +GSL G    +SD   +++  + +  ++   +T  MK EE
Sbjct: 274 --GADLHYHAPLITLSEIQFVGSLVGN---QSDFLGIMR--LAEAGKVKPMITKTMKLEE 326
Query: 367 INSAFDLL 374
            N A D L
Sbjct: 327 ANEAIDNL 334

>pdb|3UOG|A Chain A, Crystal Structure Of Putative Alcohol Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 363

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 88/229 (38%), Gaps = 11/229 (4%)
Query: 156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
            SEY VL     V    ++    A  L C   T   A     ++  G  VV+ G G + L
Sbjct: 144 LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVAL 203
Query: 216 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY 275
              + A+  GA  I+      EK +     G    +N     +  V ++     D GAD+
Sbjct: 204 FGLQIAKATGAEVIV-TSSSREKLDRAFALGADHGIN--RLEEDWVERVYALTGDRGADH 260
Query: 276 CFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 335
             E  G A L Q   A      G+  V+GV + G ++S     +L    ++ G   G  +
Sbjct: 261 ILEIAGGAGLGQSLKAVAPD--GRISVIGVLE-GFEVSGPVGPLLLKSPVVQGISVGHRR 317
Query: 336 AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 384
           A  D+   + R     L L   +    KF E+  A   L +G   + VI
Sbjct: 318 ALEDLVGAVDR-----LGLKPVIDXRYKFTEVPEALAHLDRGPFGKVVI 361

>pdb|3TWO|A Chain A, The Crystal Structure Of Cad From Helicobacter Pylori Complexed With Nadp(H) Length = 348

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 137/359 (38%), Gaps = 61/359 (16%)
Query: 43  EVRVRIICTSLCHSDV----TFWKMKDFPAVFPRILGHE-AIXXXXXXXXXXXXXXXXXX 97
           +V + I+   +CHSD+    + WK      ++P I GHE A                   
Sbjct: 31  DVLIDILYAGICHSDIHSAYSEWK----EGIYPMIPGHEIAGIIKEVGKGVKKFKIGDVV 86
Query: 98  XIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS 157
            +  F+  C  C  C+  +   C+   F        D    F D           +  +S
Sbjct: 87  GVGCFVNSCKACKPCKEHQEQFCTKVVFT------YDCLDSFHDNEPH-------MGGYS 133
Query: 158 EYTVLDIAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIG-- 214
              V+D  +V+ VD   P  + A LL  G++T   +  + + V  G+ V + G G +G  
Sbjct: 134 NNIVVDENYVISVDKNAPLEKVAPLLCAGITT--YSPLKFSKVTKGTKVGVAGFGGLGSM 191
Query: 215 ---LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD 270
               AVA GA +    R         K +     GV  F  + K C ++           
Sbjct: 192 AVKYAVAMGAEVSVFAR------NEHKKQDALSMGVKHFYTDPKQCKEE----------- 234
Query: 271 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG-KILMGS 329
              D+    +     +++ Y       G   ++G+        LS F+ +H G + + GS
Sbjct: 235 --LDFIISTIPTHYDLKD-YLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGS 291
Query: 330 LFGGLKAKSD-IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM 386
           L GG+K   + +   +K  +  E++L       +  ++I++A+  L  GK   R VI M
Sbjct: 292 LIGGIKETQEMVDFSIKHNIYPEIDL-------ILGKDIDTAYHNLTHGKAKFRYVIDM 343

>pdb|1R37|A Chain A, Alcohol Dehydrogenase From Sulfolobus Solfataricus Complexed With Nad(H) And 2-Ethoxyethanol Length = 347

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 141/368 (38%), Gaps = 46/368 (12%)
Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61
Query: 70  FPRILGHEAIXXXXXXXXXXXXXXXXXXXIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE                       +       C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDS------- 114
Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST 188
             PR     F     E    +V V  +     L   + V+  P         L+C G++T
Sbjct: 115 --PRWLGINFDGAYAE----YVIVPHYKYMYKLRRLNAVEAAP---------LTCSGITT 159
Query: 189 GVGAAWRTANVEVGSTVVIFGLGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
               A R A+++   T+++ G G     +AV     + GAT IIGVDV  E  E  KR G
Sbjct: 160 Y--RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGAT-IIGVDVREEAVEAAKRAG 216
Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
               +N+       +++I       G D   + +  +      Y       GK +++G+ 
Sbjct: 217 ADYVINASM--QDPLAEIRRITESKGVDAVID-LNNSEKTLSVYPKALAKQGKYVMVGLF 273
Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
             G+ L   +  +  S    +GSL G    +SD   +++  + +  ++   +T  MK EE
Sbjct: 274 --GADLHYHAPLITLSEIQFVGSLVGN---QSDFLGIMR--LAEAGKVKPMITKTMKLEE 326
Query: 367 INSAFDLL 374
            N A D L
Sbjct: 327 ANEAIDNL 334

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	388
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	0.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	0.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	0.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	0.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	0.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	1e-155
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	1e-136
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	1e-79
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	2e-65
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	6e-65
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	2e-60
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-59
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	1e-59
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	8e-59
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	7e-57
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	3e-55
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	2e-53
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	1e-52
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-50
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	3e-49
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	9e-49
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	3e-48
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	7e-44
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	3e-43
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	8e-43
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	1e-39
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	2e-39
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	3e-26
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	6e-25
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	7e-25
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	4e-24
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	7e-23
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	6e-22
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	7e-21
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	8e-21
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	1e-20
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	1e-19
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	3e-19
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	7e-18
3gms_A	340	Putative NADPH:quinone reductase; structural genom	1e-15
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	3e-13
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	5e-13
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	5e-13
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	7e-13
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	1e-12
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	7e-12
4eye_A	342	Probable oxidoreductase; structural genomics, niai	3e-11
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	3e-11
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	7e-11
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	1e-10
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	4e-09
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	5e-08
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	2e-07
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	2e-07
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	4e-07
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	2e-06
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	1e-05
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	2e-04
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	3e-04
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	4e-04

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score =  554 bits (1431), Expect = 0.0
 Identities = 165/376 (43%), Positives = 241/376 (64%), Gaps = 3/376 (0%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH   G+VESVGE V  +  GD VIP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP  P ++ CLL CG+STG 
Sbjct: 121 LMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKIDPLAPLDKVCLLGCGISTGY 179

Query: 191 GAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
           GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+  +KF   K FG TE 
Sbjct: 180 GAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATEC 239

Query: 251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 310
           +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C KGWG ++V+GV   G 
Sbjct: 240 INPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGE 298

Query: 311 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
           +++   F+++ +G+   G+ FGG K+   +P L+  YM K++++D+FVTH + F+EIN A
Sbjct: 299 EIATRPFQLV-TGRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKA 357

Query: 371 FDLLIKGKCLRCVIWM 386
           F+L+  GK +R V+ +
Sbjct: 358 FELMHSGKSIRTVVKI 373

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score =  538 bits (1388), Expect = 0.0
 Identities = 152/375 (40%), Positives = 224/375 (59%), Gaps = 4/375 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTL-VTP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA G+VES+GE V  V  GD VIP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D   P  + CL+ CG STG
Sbjct: 121 GTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKIDAASPLEKVCLIGCGFSTG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+  +KF   K  G TE
Sbjct: 180 YGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATE 239

Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            VN ++   K + +++ +M++GG D+ FE +G    +  A +CC++ +G ++++GV    
Sbjct: 240 CVNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDS 298

Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             LS++   +L SG+   G++FGG K+K  +P L+  +M K+  LD  +TH + FE+IN 
Sbjct: 299 QNLSMNPMLLL-SGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINE 357

Query: 370 AFDLLIKGKCLRCVI 384
            FDLL  G+ +R ++
Sbjct: 358 GFDLLRSGESIRTIL 372

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score =  537 bits (1386), Expect = 0.0
 Identities = 158/377 (41%), Positives = 234/377 (62%), Gaps = 4/377 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     G+ VIP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+ P +  CLL CGVSTG
Sbjct: 122 DVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSAPLDTVCLLGCGVSTG 180

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+  +KFE  K FG T+
Sbjct: 181 FGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATD 240

Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
           FVN  +   + +SQ++  MT+GG D+  ECVG   +++ A   C KGWG ++++G     
Sbjct: 241 FVNPNDH-SEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWT-DL 298

Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
             ++    +++ +G+   GS+FGG K K  +P ++K Y+DK+++LD+F+TH M  E +N 
Sbjct: 299 HDVATRPIQLI-AGRTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVND 357

Query: 370 AFDLLIKGKCLRCVIWM 386
           A DL+  GKC+R V+ +
Sbjct: 358 AIDLMKHGKCIRTVLSL 374

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score =  536 bits (1382), Expect = 0.0
 Identities = 154/379 (40%), Positives = 221/379 (58%), Gaps = 10/379 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+     K   A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKK-KAL 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     GD VIP F   C  C  C S   NLC        P
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 130 W----MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCG 185
                +  D+TSRF   +G +I+HF+ VSSFS+YTV+  A++ +VD      R CL+ CG
Sbjct: 121 TIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCG 179

Query: 186 VSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+  EKF   K  
Sbjct: 180 FSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL 239

Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
           G T+ +N +   DK V  +I ++T GG DY  +C G A  ++ A  C   GWG   V+G 
Sbjct: 240 GATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGA 298

Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFE 365
                ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+ +LD  VTH + FE
Sbjct: 299 --KVDEMTIPTVDVI-LGRSINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFE 355

Query: 366 EINSAFDLLIKGKCLRCVI 384
            IN A DL+ +GK +R ++
Sbjct: 356 SINDAIDLMKEGKSIRTIL 374

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score =  531 bits (1371), Expect = 0.0
 Identities = 150/375 (40%), Positives = 219/375 (58%), Gaps = 6/375 (1%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +  K    P+ 
Sbjct: 3   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEII-PSK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+GVVES+G  V  V  GD VIP F+  C  C  C+S   N C         
Sbjct: 62  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP  P   +CL+ CG +TG
Sbjct: 122 GLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKAPLE-SCLIGCGFATG 179

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV    +KF      G TE
Sbjct: 180 YGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE 239

Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            +N K+  DK + ++I + T+GG DY  EC G    +  A      G G T+VLG+  P 
Sbjct: 240 CLNPKDY-DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPN 298

Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
            +L L    +L +G+ L GS+FGG K + ++  L+  YM K++ ++  V+ ++  ++IN 
Sbjct: 299 ERLPLDPLLLL-TGRSLKGSVFGGFKGE-EVSRLVDDYMKKKINVNFLVSTKLTLDQINK 356

Query: 370 AFDLLIKGKCLRCVI 384
           AF+LL  G+ +R ++
Sbjct: 357 AFELLSSGQGVRSIM 371

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score =  440 bits (1134), Expect = e-155
 Identities = 105/376 (27%), Positives = 173/376 (46%), Gaps = 8/376 (2%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
           +     AA+    G    +  + +  P   EV V+++ T +CH+D+     + +P   P 
Sbjct: 3   ELKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRD-QKYPVPLPA 61

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           +LGHE  G++E++G NV  +  GD V+  +   C +C  C +     CS F  +      
Sbjct: 62  VLGHEGSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGAD 120

Query: 133 RDQTSRFKDLRGET-IHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
            +               HF + SSF+ Y +    + VKV   VP      L CG+ TG G
Sbjct: 121 SEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDVPIELLGPLGCGIQTGAG 180

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
           A      V   S+ V +G G++GL+    A++CGA+ II VD++  + E+ K+ G T  +
Sbjct: 181 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI 240

Query: 252 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ 311
           NSK    +     I ++TDGG ++  E  G   ++++         GK  V+G  Q G+ 
Sbjct: 241 NSK---TQDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTT 296

Query: 312 LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAF 371
                 ++L  GK ++G + G    K  IP L++ Y   +   D+ V     F+EIN A 
Sbjct: 297 AQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAA 355

Query: 372 DLLIKGKCLRCVIWMG 387
               KG  L+ +I + 
Sbjct: 356 IDSRKGITLKPIIKIA 371

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score =  392 bits (1009), Expect = e-136
 Identities = 88/382 (23%), Positives = 147/382 (38%), Gaps = 27/382 (7%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P I
Sbjct: 15  GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPII 74

Query: 74  LGHEAIGVVESVGENVDG-----VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
           LGHE  G V  V           +  GD+++ +    C EC  C+  K            
Sbjct: 75  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKVYG 134

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGVS 187
             + R   S +  LRG           +S + VLD    V+KV      +   +  C  +
Sbjct: 135 --INRG-CSEYPHLRG----------CYSSHIVLDPETDVLKVSEKDDLDVLAMAMCSGA 181

Query: 188 TGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV 247
           T   A         G TVVI G G +GL     AR  GA  +I +     + ++ +  G 
Sbjct: 182 TAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 241

Query: 248 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
              +N +    +   + I+D+T G GAD+  E  G +  + E     R+G G   V GV 
Sbjct: 242 DLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVA 300

Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKS--DIPILLKRYMDKELELDKFVTHEMKF 364
            P   +       ++   +L  + F G+           +         L K +TH +  
Sbjct: 301 VPQDPVPFK----VYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPL 356

Query: 365 EEINSAFDLLIKGKCLRCVIWM 386
           +E N A +L+   + L+ +++ 
Sbjct: 357 KEANKALELMESREALKVILYP 378

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score =  247 bits (633), Expect = 1e-79
 Identities = 83/372 (22%), Positives = 142/372 (38%), Gaps = 35/372 (9%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM--KDFPAVFPRILG 75
           +A   T  G   V+ ++    P   E+ +++    LCHSD+    M    +    P  LG
Sbjct: 2   KAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLG 61

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE +G V  +GE V G   GD V  +    C  C  C   + N C+              
Sbjct: 62  HEGVGTVAELGEGVTGFGVGDAVAVYGPWGCGACHACARGRENYCTRA------------ 109

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAAW 194
                   G T     S  S +EY ++D A  +     + P  A  L+  G++     + 
Sbjct: 110 -----ADLGITPPGLGSPGSMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164

Query: 195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK 254
               +  GST V+ G+G +G    +  R   A R+I VD+  ++  + +  G    V S 
Sbjct: 165 VLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKS- 223

Query: 255 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 313
                  +  I ++T G GA   F+ VG  S +  A        G   V+G+       +
Sbjct: 224 ---GAGAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGI--HAGAHA 277

Query: 314 LSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDL 373
              F ++  G  ++   +G      ++  ++       L++    T     +E  +A+  
Sbjct: 278 KVGFFMIPFGASVVTPYWGTRS---ELMEVVALARAGRLDI---HTETFTLDEGPAAYRR 331

Query: 374 LIKGKCL-RCVI 384
           L +G    R V+
Sbjct: 332 LREGSIRGRGVV 343

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  211 bits (540), Expect = 2e-65
 Identities = 78/375 (20%), Positives = 145/375 (38%), Gaps = 47/375 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A    + G  + +  V +  P   ++ V++    +C +D       +FP+  P  LGHE
Sbjct: 25  KAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLH-GEFPSTPPVTLGHE 82

Query: 78  AIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
             G+V   G  V  +  G      P+    C  C  C++ + NLC               
Sbjct: 83  FCGIVVEAGSAVRDIAPGARITGDPNIS--CGRCPQCQAGRVNLC--------------- 125

Query: 136 TSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTG 189
               ++LR       + +     F+EY ++      ++  T+ P        L+C +   
Sbjct: 126 ----RNLR------AIGIHRDGGFAEYVLVPRKQAFEIPLTLDPVHGAFCEPLACCL--- 172

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
                  + ++ GSTV I G G IGL   + ARL GAT +I     + K  + +  G T 
Sbjct: 173 --HGVDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATA 230

Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            V+             + +  GG D   EC G+A  V+++    + G G  ++LGV   G
Sbjct: 231 TVDPSAGDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQG 289

Query: 310 SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS 369
            ++ +  F++L     ++GS F                    +E+D+ ++  +  +E   
Sbjct: 290 EKVEIEPFDILFRELRVLGS-FI---NPFVHRRAADLVATGAIEIDRMISRRISLDEAPD 345

Query: 370 AFDLLIKGKCLRCVI 384
                     ++ ++
Sbjct: 346 VISNPAAAGEVKVLV 360

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score =  209 bits (535), Expect = 6e-65
 Identities = 85/377 (22%), Positives = 153/377 (40%), Gaps = 46/377 (12%)

Query: 18  RAAIATAPGEPLVIDEVIV-DPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRI 73
           +AA      +PL I++V         +V VRI    +CH+D+   +    +      P  
Sbjct: 17  KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 76

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LGHE +G +E V E V+G+ +GD VI H       C+ CR+ +   C    F        
Sbjct: 77  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFP------- 129

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR---ACLLSCGVSTGV 190
                     G  I        F+E+       V+K+   +   +      L+    T  
Sbjct: 130 ----------GLNID-----GGFAEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAY 174

Query: 191 GAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
            A  +    +  G+ V I G+G +G    +  ++     +I +DV  EK ++ +R G   
Sbjct: 175 RAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADH 234

Query: 250 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
            V+++    +   + ++++T G G +   + VG  + V        +  G+ I++G    
Sbjct: 235 VVDAR----RDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGY--- 286

Query: 309 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 368
           G +L   +  V+ S     GSL G      ++  L+   +  ++ +        K +EIN
Sbjct: 287 GGELRFPTIRVISSEVSFEGSLVGNYV---ELHELVTLALQGKVRV---EVDIHKLDEIN 340

Query: 369 SAFDLLIKGKCL-RCVI 384
              + L KG+ L R V+
Sbjct: 341 DVLERLEKGEVLGRAVL 357

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  197 bits (504), Expect = 2e-60
 Identities = 81/371 (21%), Positives = 143/371 (38%), Gaps = 45/371 (12%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           ++ +    G  + + E  I +  +  EVRV+I  + LC SD+     K+    +P  LGH
Sbjct: 2   KSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIF-KNGAHYYPITLGH 59

Query: 77  EAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           E  G +++VG  VD +  GD    +P     C  C  C     + C+ + F  S    RD
Sbjct: 60  EFSGYIDAVGSGVDDLHPGDAVACVPLLP--CFTCPECLKGFYSQCAKYDFIGSR---RD 114

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVG 191
                    G           F+EY V+   +V  +   +P         ++ G+     
Sbjct: 115 ---------G----------GFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGL----- 150

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
            A+  A       V+I G G+IGL   + A   GA  +  +D+ SEK  + K FG  +  
Sbjct: 151 HAFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTF 210

Query: 252 NSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 310
           NS    + S  Q+   + +        E  G+   V+ A         +  ++G      
Sbjct: 211 NSS---EMSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDL 266

Query: 311 QLSLSSFE-VLHSGKILMGSL--FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEI 367
            L+ ++F  +L     ++GS   +       +     +   +++L L+  + H   FE  
Sbjct: 267 HLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESF 326

Query: 368 NSAFDLLIKGK 378
             A   + +  
Sbjct: 327 AQAVRDIARNA 337

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score =  195 bits (499), Expect = 1e-59
 Identities = 88/375 (23%), Positives = 153/375 (40%), Gaps = 45/375 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--MKDFPAVFPRILG 75
           +AA+     EPL I++V +  P   EV +RI    +C +D+  WK          P ILG
Sbjct: 5   KAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILG 64

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HE  G +  VGE +  V +GD V+ +       C  CR  K N+C               
Sbjct: 65  HENAGTIVEVGE-LAKVKKGDNVVVYATWGDLTCRYCREGKFNICKN------------- 110

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA--- 192
               + + G+T +       FSEY ++  +  +    ++ P  A  L+   +T +GA   
Sbjct: 111 ----QIIPGQTTN-----GGFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQ 161

Query: 193 AWRTANVEVGSTVVIFGLGSIG-LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV 251
           A    +      V++ G+G +    +     L     I+G+    +  +     G     
Sbjct: 162 ALPFISKFAEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVS 221

Query: 252 NSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS 310
             K+        +I  +TDG GA    + VG             +  G  I++G+   G 
Sbjct: 222 EMKD-----AESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGM--EGK 273

Query: 311 QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
           ++SL +F+     K L+GS +G L    D+  +++     +++       ++  ++IN A
Sbjct: 274 RVSLEAFDTAVWNKKLLGSNYGSLN---DLEDVVRLSESGKIKP---YIIKVPLDDINKA 327

Query: 371 FDLLIKGKCL-RCVI 384
           F  L +G+   R VI
Sbjct: 328 FTNLDEGRVDGRQVI 342

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score =  195 bits (499), Expect = 1e-59
 Identities = 92/381 (24%), Positives = 157/381 (41%), Gaps = 51/381 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE  G +E VG+ V G  +GD+V  +       C  CR  + +LC +  +    
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRWL--- 118

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                         G          +++EY ++     +     +    A  L+C   T 
Sbjct: 119 --------------GINFD-----GAYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITT 159

Query: 190 VGAAWRTANVEVGSTVVIF----GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
             A  R A+++   T+++     GLG++ + +A    + GA  IIGVDV  E  E  KR 
Sbjct: 160 YRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIA--KAVSGA-TIIGVDVREEAVEAAKRA 215

Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 304
           G    +N+     +     I  +T+  G D   +       +        K  GK +++G
Sbjct: 216 GADYVINAS---MQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVG 271

Query: 305 VDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKF 364
           +   G+ L   +  +  S    +GSL G    +SD   +++  + +  ++   +T  MK 
Sbjct: 272 L--FGADLHYHAPLITLSEIQFVGSLVG---NQSDFLGIMR--LAEAGKVKPMITKTMKL 324

Query: 365 EEINSAFDLLIKGKCL-RCVI 384
           EE N A D L   K + R V+
Sbjct: 325 EEANEAIDNLENFKAIGRQVL 345

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  193 bits (493), Expect = 8e-59
 Identities = 81/378 (21%), Positives = 137/378 (36%), Gaps = 51/378 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           RA    AP E L + +  V  P   E+ VR+   S+C +D+  WK           P + 
Sbjct: 2   RALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVT 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVI--PHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  GVVE+VG  V     GD V    H +  C  C  CR+   ++C            
Sbjct: 62  GHEFSGVVEAVGPGVRRPQVGDHVSLESHIV--CHACPACRTGNYHVC------------ 107

Query: 133 RDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                   + +       + V     F+EY V+   +       +P   A +       V
Sbjct: 108 -------LNTQ------ILGVDRDGGFAEYVVVPAENAWVNPKDLPFEVAAILEPFGNAV 154

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
                      +   G +V+I G G IGL  A   R  GA  I+  D    +    + + 
Sbjct: 155 -----HTVYAGSGVSGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYA 209

Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD 306
               VN     ++ + +++  +T  G +   E  G  + + +       G G+  +LG+ 
Sbjct: 210 -DRLVNPL---EEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIP 264

Query: 307 QPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
               +  L+  E++  G    G    G +                ++L   +TH +    
Sbjct: 265 SDPIRFDLAG-ELVMRGITAFGIA--GRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSR 321

Query: 367 INSAFDLLIKGKCLRCVI 384
              AF LL  G+ ++ ++
Sbjct: 322 YREAFGLLASGQAVKVIL 339

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  188 bits (480), Expect = 7e-57
 Identities = 87/380 (22%), Positives = 152/380 (40%), Gaps = 53/380 (13%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRIL 74
            A + T PG    + EV V  P   EV ++++ TS+C +D+  ++  ++       P+I+
Sbjct: 6   VAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIM 65

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE  G V  +G  V+G+  GD   V  H +  C +C  CR  + ++C            
Sbjct: 66  GHEVAGEVVEIGPGVEGIEVGDYVSVETHIV--CGKCYACRRGQYHVCQN---------- 113

Query: 133 RDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGV 186
                               V     F+EY V+   ++ K   ++PP  A L   L   V
Sbjct: 114 ---------------TKIFGVDTDGVFAEYAVVPAQNIWKNPKSIPPEYATLQEPLGNAV 158

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG 246
                          G +V+I G G +GL     A+  GA  +I  +    + E+ K+ G
Sbjct: 159 D----TVLAG--PISGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVG 212

Query: 247 VTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
               +N        V + ++D+TDG G D   E  G    +++         G+  +LG+
Sbjct: 213 ADYVINPFEE---DVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGL 268

Query: 306 DQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-F 364
                 +  ++  ++     + G    G         + +     +L LD  +TH+ K F
Sbjct: 269 YPGKVTIDFNNL-IIFKALTIYGIT--GRHLWETWYTVSRLLQSGKLNLDPIITHKYKGF 325

Query: 365 EEINSAFDLLIKGKCLRCVI 384
           ++   AF+L+  GK  + V 
Sbjct: 326 DKYEEAFELMRAGKTGKVVF 345

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  184 bits (469), Expect = 3e-55
 Identities = 79/381 (20%), Positives = 141/381 (37%), Gaps = 42/381 (11%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFP 67
           A       + +   PG+ L ++   +  P  +EV +R+    +C SDV +W+   + +F 
Sbjct: 2   AAAKPNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFI 60

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
              P +LGHEA G VE VG +V  +  GD V     A       C+  + NL  +  F  
Sbjct: 61  VKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCA 120

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSC 184
           +P  P D                        +   + A   K+   V      L   LS 
Sbjct: 121 TP--PDDGN-------------------LCRFYKHNAAFCYKLPDNVTFEEGALIEPLSV 159

Query: 185 GVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR 244
           G+      A R   V +G  V++ G G IG+     A+  GA +++  D+ + +    K 
Sbjct: 160 GI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE 214

Query: 245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 304
            G    +       + +++ +        +   EC G  + +Q      R G G  +++G
Sbjct: 215 IGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVG 273

Query: 305 VDQPGSQLSLSSFEVLHSGKILMGSL-FGGLKAKSDIPILLKRYMDKELELDKFVTHEMK 363
           +       ++           + G   +         P+ +     K + +   VTH   
Sbjct: 274 L--GSEMTTVPLLHAAIREVDIKGVFRYCN-----TWPVAISMLASKSVNVKPLVTHRFP 326

Query: 364 FEEINSAFDLLIKGKCLRCVI 384
            E+   AF+   KG  L+ ++
Sbjct: 327 LEKALEAFETFKKGLGLKIML 347

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score =  181 bits (461), Expect = 2e-53
 Identities = 74/412 (17%), Positives = 128/412 (31%), Gaps = 69/412 (16%)

Query: 5   KPSNKTAGKPIQCRAAIATAPGEPLVIDEVIV-DPPNSHEVRVRIICTSLCHSDVTFWK- 62
           K   K     +    +      E + ++EV         E+ +++    +C SDV   + 
Sbjct: 19  KLGPKDIEGKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQT 77

Query: 63  ------MKDFPAVFPRILGHEAIGVVESVGENV------DGVVEGD--VVIPHFLADCTE 108
                 +      FP  LGHE  GVV   G              G+           C  
Sbjct: 78  DEEGYILYPGLTGFPVTLGHEFSGVVVEAGPEAINRRTNKRFEIGEPVCAEEMLW--CGH 135

Query: 109 CVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS---SFSEYTVLDIA 165
           C  C     N C                            + +  +   +F+EY  +D  
Sbjct: 136 CRPCAEGFPNHCEN-------------------------LNELGFNVDGAFAEYVKVDAK 170

Query: 166 HVVKV-------DPTVPPNRACL---LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGL 215
           +   +       +         L    S   +       R   +  G  VVI G G IGL
Sbjct: 171 YAWSLRELEGVYEGDRLFLAGSLVEPTSVAYN---AVIVRGGGIRPGDNVVILGGGPIGL 227

Query: 216 AVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GAD 274
           A     +  GA+++I  +    +  + K  G    ++       +  + ++D T+G GA 
Sbjct: 228 AAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKE---NFVEAVLDYTNGLGAK 284

Query: 275 YCFECVGLASLVQEA--YACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG 332
              E  G+  LV         R       V  V +  +++ L+          ++GS   
Sbjct: 285 LFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQ-- 342

Query: 333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVI 384
           G       P ++   M   +++ K ++  +  EEI      L   K L  V 
Sbjct: 343 GHSGHGTFPRVI-SLMASGMDMTKIISKTVSMEEIPEYIKRLQTDKSLVKVT 393

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  177 bits (452), Expect = 1e-52
 Identities = 86/370 (23%), Positives = 141/370 (38%), Gaps = 45/370 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
            +A+     + L +++  +  P   EV +++    +C SDV +++   + DF    P ++
Sbjct: 6   LSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVI 64

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           GHEA G V  VG+NV  + +GD V       C  C  C+  K NLC    F  +P  P D
Sbjct: 65  GHEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATP--PDD 122

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTGVG 191
                                 + Y V       K+   V      L   LS GV     
Sbjct: 123 GN-------------------LARYYVHAADFCHKLPDNVSLEEGALLEPLSVGV----- 158

Query: 192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--VTE 249
            A R A V++G+TV++ G G IGL     A+  GA  ++       + E+ K  G  VT 
Sbjct: 159 HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAF-VVCTARSPRRLEVAKNCGADVTL 217

Query: 250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG 309
            V+     + S+ + I        +   +C G    +       R G G  +++G+    
Sbjct: 218 VVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGM--GS 274

Query: 310 SQLSLSSFEVLHSGKILMGSL-FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEIN 368
             +++           +     +       D PI L+        + + VTH  K E+  
Sbjct: 275 QMVTVPLVNACAREIDIKSVFRYCN-----DYPIALEMVASGRCNVKQLVTHSFKLEQTV 329

Query: 369 SAFDLLIKGK 378
            AF+   K  
Sbjct: 330 DAFEAARKKA 339

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  173 bits (440), Expect = 1e-50
 Identities = 77/373 (20%), Positives = 131/373 (35%), Gaps = 48/373 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +  +  +   P +      +     EV V +  T +C SDV FWK   +         +L
Sbjct: 17  QHDLWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVL 76

Query: 75  GHEAIGVVESVGENVDGVVEGD-VVI-PHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE+ G V +V  +V  +  GD V I P  +  C  C  C + + N C    F  +P +P
Sbjct: 77  GHESAGEVIAVHPSVKSIKVGDRVAIEPQVI--CNACEPCLTGRYNGCERVDFLSTPPVP 134

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL---LSCGVSTG 189
                      G              Y         K+   +      +   LS  +   
Sbjct: 135 -----------G----------LLRRYVNHPAVWCHKI-GNMSYENGAMLEPLSVAL--- 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
             A  + A V +G  V+I G G IGL     A+  GA  ++  D+   + +  K      
Sbjct: 170 --AGLQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEV 227

Query: 250 FVNSKNCGD-KSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 307
             +       +  ++ I++   G       EC G+ S +  A    + G GK  V+GV  
Sbjct: 228 VTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGV-- 284

Query: 308 PGSQLSLSSFEVLHSGKILMGSL-FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE 366
             +++ +           L     +         P  ++   +  ++L + VTH    E+
Sbjct: 285 GKNEIQIPFMRASVREVDLQFQYRYCN-----TWPRAIRLVENGLVDLTRLVTHRFPLED 339

Query: 367 INSAFDLLIKGKC 379
              AF+     K 
Sbjct: 340 ALKAFETASDPKT 352

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score =  168 bits (429), Expect = 3e-49
 Identities = 82/368 (22%), Positives = 130/368 (35%), Gaps = 45/368 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +     + G+ +   E     P   +  VR +  + C SD+              ILGHE
Sbjct: 2   KGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIGERHNMILGHE 60

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
           A+G V  VG  V     GD VV+P  +         +                       
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVVVP-AITPDWRTSEVQRGYHQHSG--------------- 104

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHV-------VKVDPTVPPNRACLLSCGVSTG 189
                +        V    F E+      HV         +   +P   A ++   ++TG
Sbjct: 105 ----GMLAGWKFSNVKDGVFGEF-----FHVNDADMNLAHLPKEIPLEAAVMIPDMMTTG 155

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
              A   AN+++G TV + G+G +GL    GA   GA RI  V       +I   +G T+
Sbjct: 156 FHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATD 214

Query: 250 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
            +N K   +  + + I+  TDG G D      G      +A    + G      +     
Sbjct: 215 IINYK---NGDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGE 270

Query: 309 GSQLSL--SSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FE 365
           G  + +  S + V    K + G L  G +    +  L+     K ++  K VTH  + F+
Sbjct: 271 GDNIDIPRSEWGVGMGHKHIHGGLCPGGRL--RMERLIDLVFYKRVDPSKLVTHVFRGFD 328

Query: 366 EINSAFDL 373
            I  AF L
Sbjct: 329 NIEKAFML 336

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score =  167 bits (426), Expect = 9e-49
 Identities = 62/371 (16%), Positives = 117/371 (31%), Gaps = 46/371 (12%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRIL 74
           +A       +  V+ E     P S E  VR +   +C +D                  +L
Sbjct: 2   KAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVL 61

Query: 75  GHEAIGVVESVGENVDGVVEGD--VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHEA+GVV  V  N   + EGD  V                  + ++     +     + 
Sbjct: 62  GHEAVGVV--VDPNDTELEEGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMYFERGIVG 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--LSCGV-STG 189
                      G            SE+      ++V++  +       +  +S    +  
Sbjct: 120 AH---------G----------YMSEFFTSPEKYLVRIPRSQAELGFLIEPISITEKALE 160

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARL--CGATRIIGV---DVISEKFEIGKR 244
              A R+A     S+  + G GS+GL      ++   G   +  +   D      +I + 
Sbjct: 161 HAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE 220

Query: 245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG 304
              T   + +        + + D+     D+ +E  G      ++        G   +LG
Sbjct: 221 LDATYVDSRQT-----PVEDVPDVY-EQMDFIYEATGFPKHAIQSVQALAPN-GVGALLG 273

Query: 305 VDQPGS---QLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHE 361
           V    +          E++   K L+GS+   ++      +   +    +  L+  VT  
Sbjct: 274 VPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVEHFEAATVTFTK--LPKWFLEDLVTGV 331

Query: 362 MKFEEINSAFD 372
               E  +AFD
Sbjct: 332 HPLSEFEAAFD 342

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score =  166 bits (423), Expect = 3e-48
 Identities = 66/389 (16%), Positives = 121/389 (31%), Gaps = 51/389 (13%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVFP 71
           +A I   P   + + +V      +  ++++R I   +C +D                   
Sbjct: 2   KAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDF 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            +LGHEAIGVVE   E+  G  +GD+V+P     C  C  C   + + C    F  +   
Sbjct: 62  LVLGHEAIGVVE---ESYHGFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEFGEAGIH 118

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACL--LSCGV--- 186
             D         G             E+   D  ++VK+  ++         L+      
Sbjct: 119 KMD---------G----------FMREWWYDDPKYLVKIPKSIEDIGILAQPLADIEKSI 159

Query: 187 ------STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE 240
                    V              V++ G G IG+      R  G    +       + E
Sbjct: 160 EEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVE 219

Query: 241 IGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL-ASLVQEAYACCRKGWG 298
                     + NS N  DK      +  + G  D   +  G   +++        +  G
Sbjct: 220 QTVIEETKTNYYNSSNGYDK------LKDSVGKFDVIIDATGADVNILGNVIPLLGRN-G 272

Query: 299 KTIVLGVDQPGSQ--LSLSSFEVLHSGKILMGSLFGGLKA-KSDIPILLKRYMDKELELD 355
              + G    GS      +  E++H+ K ++G + G     +  +  L            
Sbjct: 273 VLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAK 332

Query: 356 KFVTHEMKFEEINSAFDLLIKGKCLRCVI 384
             +T  +   +      +L + +     I
Sbjct: 333 MLITKTVSINDEKELLKVLREKEHGEIKI 361

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score =  154 bits (391), Expect = 7e-44
 Identities = 97/384 (25%), Positives = 147/384 (38%), Gaps = 68/384 (17%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPA--VFPRILG 75
           +AA+  A G PL IDEV V  P   +V+V+I  + +CH+D+      D+P     P I G
Sbjct: 4   KAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAAD-GDWPVKPTLPFIPG 62

Query: 76  HEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +G V +VG  V  V EGD V +P   + C  C  C      LC            + 
Sbjct: 63  HEGVGYVSAVGSGVSRVKEGDRVGVPWLYSACGYCEHCLQGWETLC-----------EKQ 111

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           Q +      G +++       + EY V D  +V  +   V       + C GV+      
Sbjct: 112 QNT------GYSVN-----GGYGEYVVADPNYVGLLPDKVGFVEIAPILCAGVTV--YKG 158

Query: 194 WRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
            +  +   G  VVI G+G +G      A A G       R+  VD+   K  + +R G  
Sbjct: 159 LKVTDTRPGQWVVISGIGGLGHVAVQYARAMGL------RVAAVDIDDAKLNLARRLGAE 212

Query: 249 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
             VN++   D   +  +     GGA              +A    R+G G   + G+  P
Sbjct: 213 VAVNAR---DTDPAAWLQKEI-GGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGL--P 265

Query: 309 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTH-------E 361
                   F+V+  G  + GS+ G                D +  LD             
Sbjct: 266 PGDFGTPIFDVVLKGITIRGSIVGTRS-------------DLQESLDFAAHGDVKATVST 312

Query: 362 MKFEEINSAFDLLIKGKCL-RCVI 384
            K +++N  F  L +GK   R V+
Sbjct: 313 AKLDDVNDVFGRLREGKVEGRVVL 336

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score =  152 bits (387), Expect = 3e-43
 Identities = 97/390 (24%), Positives = 157/390 (40%), Gaps = 72/390 (18%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRILG 75
           +AA+     EPL I EV     +  EV VRI    +CH+D+      D+P     P I G
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAH-GDWPVKPKLPLIPG 60

Query: 76  HEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           HE +G+VE VG  V  +  GD V IP   + C  C  C S +  LC              
Sbjct: 61  HEGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLC-----------EHQ 109

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVGAA 193
           + +      G ++        ++EY      +VVK+   +    A  + C GV+T    A
Sbjct: 110 KNA------GYSVD-----GGYAEYCRAAADYVVKIPDNLSFEEAAPIFCAGVTT--YKA 156

Query: 194 WRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT 248
            +    + G  V I+G+G +G      A A G        ++ VD+  EK E+ K  G  
Sbjct: 157 LKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL------NVVAVDIGDEKLELAKELGAD 210

Query: 249 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP 308
             VN      +  ++ + +   GG              Q AY   R+G G  +++G+  P
Sbjct: 211 LVVNPL---KEDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGL--P 263

Query: 309 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE--LDKFVTH------ 360
             ++ +  F+ + +G  ++GS+ G                 K+L+  L            
Sbjct: 264 PEEMPIPIFDTVLNGIKIIGSIVGTR---------------KDLQEALQFAAEGKVKTII 308

Query: 361 -EMKFEEINSAFDLLIKGKCL-RCVIWMGE 388
                E+IN  FD ++KG+   R V+ + +
Sbjct: 309 EVQPLEKINEVFDRMLKGQINGRVVLTLED 338

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} Length = 347

 Score =  151 bits (385), Expect = 8e-43
 Identities = 83/391 (21%), Positives = 142/391 (36%), Gaps = 70/391 (17%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFP 71
           P   +  I       L   ++ V  P ++E+ + +  + +CH+D+  W   D+P     P
Sbjct: 3   PETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWH-GDWPLPVKLP 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            + GHE  GVV  +GENV G   GD   I      C  C  C     + C          
Sbjct: 62  LVGGHEGAGVVVGMGENVKGWKIGDYAGIKWLNGSCMACEYCELGNESNC---------- 111

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTG 189
            P    S      G T        SF +Y   D      +       +   + C G++  
Sbjct: 112 -PHADLS------GYTHD-----GSFQQYATADAVQAAHIPQGTDLAQVAPILCAGITV- 158

Query: 190 VGAAWRTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFEIGK 243
              A ++AN+  G  V I     GLGS+    A A G       R++G+D    K E+ +
Sbjct: 159 -YKALKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGY------RVLGIDGGEGKEELFR 211

Query: 244 RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL 303
             G   F++     D  +   ++  TDGGA          + ++ +    R   G T+++
Sbjct: 212 SIGGEVFIDFTKEKD--IVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLV 268

Query: 304 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE--LDKFVTH- 360
           G+   G++     F  +     ++GS  G                  +    LD F    
Sbjct: 269 GMP-AGAKCCSDVFNQVVKSISIVGSYVGNR---------------ADTREALDFFARGL 312

Query: 361 -----EM-KFEEINSAFDLLIKGKCL-RCVI 384
                ++     +   ++ + KG+ + R V+
Sbjct: 313 VKSPIKVVGLSTLPEIYEKMEKGQIVGRYVV 343

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score =  144 bits (365), Expect = 1e-39
 Identities = 72/406 (17%), Positives = 136/406 (33%), Gaps = 59/406 (14%)

Query: 18  RAAIATAPGEPLVIDEV----IVDP--PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           ++ +     + L ++ V    +        H V ++++ T++C SD   ++   F     
Sbjct: 4   KSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYR-GRFIVPKG 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
            +LGHE  G V   G +V+ +  GD V +P F   C  C  C+  + ++C       +  
Sbjct: 62  HVLGHEITGEVVEKGSDVELMDIGDLVSVP-FNVACGRCRNCKEARSDVCEN-----NLV 115

Query: 131 MPRDQTSRFKDLRGETIHHF-------VSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS 183
            P      F    G  +  +       V V  +++Y +L      K           L+S
Sbjct: 116 NPDADLGAF----GFDLKGWSGGQAEYVLVP-YADYMLLKFGD--KEQAMEKIKDLTLIS 168

Query: 184 CGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK 243
             + TG      +A V+ GS V I G G +G   A GARL GA  +I  D   E+ ++  
Sbjct: 169 DILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227

Query: 244 RFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL--------------ASLVQE 288
             G              +   I  +      D   + VG                  +  
Sbjct: 228 DAGFETIDLRN---SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNS 284

Query: 289 AYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG-GLK-------AKSDI 340
            +   R G G   + G+        ++         +  G ++   ++         +  
Sbjct: 285 LFDVVRAG-GAIGIPGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYN 343

Query: 341 PILLKRYMDKELEL--DKFVTHEMKFEEINSAFDLLIKGKCLRCVI 384
             L +  +  ++           +  ++    +    KG   + VI
Sbjct: 344 RHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSPAKFVI 389

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score =  144 bits (365), Expect = 2e-39
 Identities = 76/381 (19%), Positives = 127/381 (33%), Gaps = 53/381 (13%)

Query: 37  DPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD 96
                H V ++++ T++C SD    +     A    +LGHE  G V   G +V+ +  GD
Sbjct: 29  GKKIEHGVILKVVSTNICGSDQHMVR-GRTTAQVGLVLGHEITGEVIEKGRDVENLQIGD 87

Query: 97  -VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS- 154
            V +P F   C  C  C+     +C                +R     G         + 
Sbjct: 88  LVSVP-FNVACGRCRSCKEMHTGVCL-----------TVNPARAGGAYGYV--DMGDWTG 133

Query: 155 SFSEYTVLDIAHV--VKVDPTVPPNRAC----LLSCGVSTGVGAAWRTANVEVGSTVVIF 208
             +EY ++  A    +K+               LS  + TG   A  TA V  GSTV + 
Sbjct: 134 GQAEYVLVPYADFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGA-VTAGVGPGSTVYVA 192

Query: 209 GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM 268
           G G +GLA A  ARL GA  +I  D+   +    K  G      S    D  + + I  +
Sbjct: 193 GAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSL---DTPLHEQIAAL 249

Query: 269 TDG-GADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVDQPGSQL 312
                 D   + VG                A+++       R   GK  + G+       
Sbjct: 250 LGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPG 308

Query: 313 SLSSFEVLHSGKILMGSLFG-GLK-------AKSDIPILLKRYMDKELELDK-FVTHEMK 363
           ++ +   + S  I  G  +                   L++  M   + + +      + 
Sbjct: 309 AVDAAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVIS 368

Query: 364 FEEINSAFDLLIKGKCLRCVI 384
            ++    +     G   + VI
Sbjct: 369 LDDAPRGYGEFDAGVPKKFVI 389

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} Length = 343

 Score =  106 bits (268), Expect = 3e-26
 Identities = 89/377 (23%), Positives = 146/377 (38%), Gaps = 61/377 (16%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRIL 74
           RA +  A G P  L + ++ V  P   EVRVR+   +L H DV   K +       P +L
Sbjct: 2   RAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVL 61

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
           G +  GVV++VG  V+G   GD V+ +    C  C  C + + NLC  +           
Sbjct: 62  GADGSGVVDAVGPGVEGFAPGDEVVINPGLSCGRCERCLAGEDNLCPRY----------- 110

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                  + GE  H      +++EY VL  A++      +    A  +     T    AW
Sbjct: 111 ------QILGEHRH-----GTYAEYVVLPEANLAPKPKNLSFEEAAAIPLTFLT----AW 155

Query: 195 R----TANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVI-----SEKFEIGKR 244
           +       V  G  V++   GS + +A  + A+L GA       VI      +K    K 
Sbjct: 156 QMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGAR------VIATAGSEDKLRRAKA 209

Query: 245 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 303
            G  E VN          + +  +T G GAD   +  G A   +        G G+  + 
Sbjct: 210 LGADETVNYT---HPDWPKEVRRLTGGKGADKVVDHTG-ALYFEGVIKATANG-GRIAIA 264

Query: 304 GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE--LDKFVTHE 361
           G    G + +L    V +    ++GS      +KS +  +L+   + +L+  + +     
Sbjct: 265 GA-SSGYEGTLPFAHVFYRQLSILGSTMA---SKSRLFPILRFVEEGKLKPVVGQ----V 316

Query: 362 MKFEEINSAFDLLIKGK 378
           +  E       LL + +
Sbjct: 317 LPLEAAAEGHRLLEERR 333

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score =  104 bits (262), Expect = 6e-25
 Identities = 68/412 (16%), Positives = 129/412 (31%), Gaps = 82/412 (19%)

Query: 12  GKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDV---------- 58
               +  A + T   +P   + +D+V V      E  V ++ +S+ ++ V          
Sbjct: 38  KDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLST 97

Query: 59  --------TFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECV 110
                       +     +   ++G +  GVV   G  V+    GD V+ H L+   E  
Sbjct: 98  FGFLERYGRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHCLSVELESS 157

Query: 111 GCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV 170
              +             +   P  +   F+   G            +E  ++    ++  
Sbjct: 158 DGHND------------TMLDPEQRIWGFETNFG----------GLAEIALVKSNQLMPK 195

Query: 171 DPTVPPNRACLLSCGVSTGVGAAWR------TANVEVGSTVVIFGLGS-IGLAVAEGARL 223
              +    A       ST    A+R       A ++ G  V+I+G    +G    + A  
Sbjct: 196 PDHLSWEEAAAPGLVNST----AYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALA 251

Query: 224 CGATRIIGVDVIS--EKFEIGKRFGVTEFVNSKNCGDKSVSQI--------------IID 267
            GA  I    V+S  +K EI +  G    ++    G +                   I +
Sbjct: 252 GGANPIC---VVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRE 308

Query: 268 MTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKIL 326
           +T G   D  FE  G  +    +    RKG G          G      +  +  S K +
Sbjct: 309 LTGGEDIDIVFEHPGRETFGA-SVFVTRKG-GTITTCAS-TSGYMHEYDNRYLWMSLKRI 365

Query: 327 MGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 378
           +GS F   +   +      R +  +  +   ++     E+   A   + +  
Sbjct: 366 IGSHFANYREAWE----ANRLIA-KGRIHPTLSKVYSLEDTGQAAYDVHRNL 412

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* Length = 371

 Score =  103 bits (259), Expect = 7e-25
 Identities = 67/392 (17%), Positives = 122/392 (31%), Gaps = 77/392 (19%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
           P Q  A       E  V +          +V VR+   ++  SD     M+   A     
Sbjct: 9   PPQQTALTVNDHDEVTVWNAAPCPMLPRDQVYVRVEAVAINPSD---TSMRGQFATPWAF 65

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
           LG +  G V +VG +V  +  GD V                           ++ P  P 
Sbjct: 66  LGTDYAGTVVAVGSDVTHIQVGDRVY----------------------GAQNEMCPRTPD 103

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVST----- 188
                                +FS+YTV       K+   +   +A  L  G+ST     
Sbjct: 104 Q-------------------GAFSQYTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAM 144

Query: 189 ---GVGAAW----RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEK-F 239
              G+        +         V+++G   +      +  RL G   I      S   F
Sbjct: 145 KLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGYIPIA---TCSPHNF 201

Query: 240 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 299
           ++ K  G  E  + +     +++Q I   T     Y  +C+         +A   +  G 
Sbjct: 202 DLAKSRGAEEVFDYR---APNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGH 258

Query: 300 TIVL--GVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLK------RYMDKE 351
            + L    +   ++  +++   L       GS +     +       +      R   + 
Sbjct: 259 YVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQL 318

Query: 352 LELDKFVTHEMK-----FEEINSAFDLLIKGK 378
           +E  + V H ++     F+ I    +L+ KG+
Sbjct: 319 VEDGRLVHHPLRVVQGGFDHIKQGMELVRKGE 350

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score =  101 bits (253), Expect = 4e-24
 Identities = 75/370 (20%), Positives = 123/370 (33%), Gaps = 63/370 (17%)

Query: 20  AIATAPG--EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRIL 74
             +T       L + E  V     H++ VR +  SL + D     ++        FP + 
Sbjct: 30  EWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDK--LVLETGMGLDLAFPFVP 87

Query: 75  GHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRD 134
             +  GVVE+VG++V     GD VI  F     + +   + +                  
Sbjct: 88  ASDMSGVVEAVGKSVTRFRPGDRVISTFAPGWLDGLRPGTGRTPAYET------LGGAHP 141

Query: 135 QTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAW 194
                                 SEY VL     V    ++    A  L C   T    AW
Sbjct: 142 GV-------------------LSEYVVLPEGWFVAAPKSLDAAEASTLPCAGLT----AW 178

Query: 195 R----TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRII--GVDVISEKFEIGKRFGVT 248
                  ++  G  VV+ G G + L   + A+  GA  I+        EK +     G  
Sbjct: 179 FALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSR---EKLDRAFALGAD 235

Query: 249 EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ 307
             +N     ++   + +  +T   GAD+  E  G A L Q +        G+  V+GV  
Sbjct: 236 HGINRL---EEDWVERVYALTGDRGADHILEIAGGAGLGQ-SLKAVAPD-GRISVIGV-L 289

Query: 308 PGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKF---VTHEMKF 364
            G ++S     +L    ++ G   G  +A  D        +   ++       +    KF
Sbjct: 290 EGFEVSGPVGPLLLKSPVVQGISVGHRRALED--------LVGAVDRLGLKPVIDMRYKF 341

Query: 365 EEINSAFDLL 374
            E+  A   L
Sbjct: 342 TEVPEALAHL 351

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A Length = 447

 Score = 98.7 bits (246), Expect = 7e-23
 Identities = 59/394 (14%), Positives = 118/394 (29%), Gaps = 75/394 (19%)

Query: 25  PGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDV------------------TFWKMKDF 66
             + L + EV +      EV V ++ +S+ ++ V                          
Sbjct: 46  VRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNARQGGWATR 105

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
                 +LG +  GVV   G  V     GD VI H      E        G L       
Sbjct: 106 HDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVD-EQEPATHGDGMLG------ 158

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                     +  +    ET          +EY V+  + ++     +    A +     
Sbjct: 159 ----------TEQRAWGFETNF-----GGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCA 203

Query: 187 STGVGAAWR------TANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKF 239
            T    A+R       A ++ G  V+I+G    +G    +  +  G    + V   ++K 
Sbjct: 204 GT----AYRMLVSDRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGG-IPVAVVSSAQKE 258

Query: 240 EIGKRFGVTEFVNSKNCGD---------------KSVSQIIIDMTDGGADYCFECVGLAS 284
              +  G    +N    G                + +++++++      D  FE  G  +
Sbjct: 259 AAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVT 318

Query: 285 LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILL 344
               +    R+G G  +  G    G   +  +  +    K ++GS     + +       
Sbjct: 319 FGL-SVIVARRG-GTVVTCGS-SSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQA----T 371

Query: 345 KRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 378
            R  +    +   ++      E   A  ++   +
Sbjct: 372 NRLFESG-AVVPAMSAVYPLAEAAEACRVVQTSR 404

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* Length = 366

 Score = 95.0 bits (237), Expect = 6e-22
 Identities = 86/397 (21%), Positives = 137/397 (34%), Gaps = 92/397 (23%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
            P++     A      L             +VR +++   +CHSD+   K     +++P 
Sbjct: 13  HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPL 72

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLAD-CTECVGCRSKKGNLCSAFPFKISPWM 131
           + GHE +G V  VG  V  V  GD V    L   C  C  C +   N C           
Sbjct: 73  VPGHEIVGEVTEVGSKVKKVNVGDKVGVGCLVGACHSCESCANDLENYCPKMIL------ 126

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST-- 188
               T       G   +       +S + V +  ++++    +P +    L C G++   
Sbjct: 127 ----TYASIYHDGTITY-----GGYSNHMVANERYIIRFPDNMPLDGGAPLLCAGITVYS 177

Query: 189 -----GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISE- 237
                G+           G  + I GLG +G      A A G++         V VIS  
Sbjct: 178 PLKYFGLDEP--------GKHIGIVGLGGLGHVAVKFAKAFGSK---------VTVISTS 220

Query: 238 ---KFEIGKRFGVTEFVNSKNCGD-KSVSQ---IIIDMTDGGADYCFECVGLASLVQEAY 290
              K E  K FG   F+ S++    ++ +     IID                       
Sbjct: 221 PSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL------------LPL 268

Query: 291 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---------AKSDIP 341
               K  GK I++G   P   L L +F ++   KI+ GS  GG+K         AK +I 
Sbjct: 269 FGLLKSHGKLILVGA--PEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAKHNI- 325

Query: 342 ILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 378
                  D E+         +  + +N+A + L K  
Sbjct: 326 -----TADIEV---------ISTDYLNTAMERLAKND 348

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 91.9 bits (229), Expect = 7e-21
 Identities = 61/383 (15%), Positives = 114/383 (29%), Gaps = 76/383 (19%)

Query: 14  PIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD---FP 67
           P + RA +    G+P   + +  + +      +VRV+++   +  SD+    ++      
Sbjct: 24  PARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDI--NMIQGNYGLL 81

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI 127
              P + G+E +  V +VG NV G+  GD VI              +  G          
Sbjct: 82  PELPAVGGNEGVAQVVAVGSNVTGLKPGDWVI-----------PANAGLG---------- 120

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS 187
                                      ++    V     +++V   +P   A  L     
Sbjct: 121 ---------------------------TWRTEAVFSEEALIQVPSDIPLQSAATLGVNPC 153

Query: 188 TGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV---DVISEKFEIGK 243
           T          ++ G +V+       +G AV + A   G   I  V     I +  +  K
Sbjct: 154 TAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK 213

Query: 244 RFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIV 302
             G    +      +    ++     D         CVG      E      +G G  + 
Sbjct: 214 SLGAEHVITE---EELRRPEMKNFFKDMPQPRLALNCVG-GKSSTELLRQLARG-GTMVT 268

Query: 303 LGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL-------ELD 355
            G       +  S   ++     L G  +     K   P   K  +   L       +L 
Sbjct: 269 YGG-MAKQPVVASVSLLIFKDLKLRG-FWLSQWKKDHSPDQFKELIL-TLCDLIRRGQLT 325

Query: 356 KFVTHEMKFEEINSAFDLLIKGK 378
                ++  ++  SA +  +K  
Sbjct: 326 APACSQVPLQDYQSALEASMKPF 348

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* Length = 357

 Score = 91.5 bits (228), Expect = 8e-21
 Identities = 80/397 (20%), Positives = 134/397 (33%), Gaps = 92/397 (23%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
              +     A  P   L      +      +V +RIIC  +CH+D+   K     + +P 
Sbjct: 6   AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPM 65

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           + GHE +G V  VG +V     GD+V +   +  C  C  C       C    +      
Sbjct: 66  VPGHEVVGEVVEVGSDVSKFTVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIW------ 119

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVST-- 188
               +     + G+          F++ TV+    VVK+   +   +A  L C GV+   
Sbjct: 120 ----SYNDVYINGQPTQ-----GGFAKATVVHQKFVVKIPEGMAVEQAAPLLCAGVTVYS 170

Query: 189 -----GVGAAWRTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVISE- 237
                G+           G    I GLG +G     +A A G           V VIS  
Sbjct: 171 PLSHFGLKQP--------GLRGGILGLGGVGHMGVKIAKAMGHH---------VTVISSS 213

Query: 238 ---KFEIGKRFGVTEFVNSKNCGD-KSVSQ---IIIDMTDGGADYCFECVGLASLVQEAY 290
              + E  +  G  ++V   +      ++     +ID                    E Y
Sbjct: 214 NKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHAL------------EPY 261

Query: 291 ACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK---------AKSDIP 341
               K  GK I++GV    + L   +  ++   K++ GS  G +K          +  + 
Sbjct: 262 LSLLKLDGKLILMGV--INNPLQFLTPLLMLGRKVITGSFIGSMKETEEMLEFCKEKGL- 318

Query: 342 ILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 378
                    E+         +K + +N+AF+ L K  
Sbjct: 319 -----SSIIEV---------VKMDYVNTAFERLEKND 341

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 369

 Score = 91.5 bits (228), Expect = 1e-20
 Identities = 78/397 (19%), Positives = 145/397 (36%), Gaps = 85/397 (21%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
                ++ +A  A +  +PL   ++    P  ++V++ I    +CHSD+   + +    V
Sbjct: 16  YKKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTV 75

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKIS 128
           +P + GHE +G V +VG+ V+    GD+V +   +  C  C  C     N C        
Sbjct: 76  YPCVPGHEIVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTG--- 132

Query: 129 PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV-DPTVPPNRACLLSC-GV 186
                  T                   +S+  V+   +V+++  P         L C G+
Sbjct: 133 -------TYNSPTPDEPGHTL----GGYSQQIVVHERYVLRIRHPQEQLAAVAPLLCAGI 181

Query: 187 STGVGAAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS-- 236
           +T     +   R      G  V + G+G +G     LA A GA          V   +  
Sbjct: 182 TT-----YSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAH---------VVAFTTS 227

Query: 237 -EKFEIGKRFGVTEFVNSKNCGD-KSVSQ---IIIDMTDGGADYCFECVGLASLVQEAYA 291
             K E  K  G  E VNS+N  +  +  +    I++      +             + + 
Sbjct: 228 EAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNL------------DDFT 275

Query: 292 CCRKGWGKTIVLGVDQPGSQL-SLSSFEVLHSGKILMGSLFGGLK---------AKSDIP 341
              K  G   ++G   P +   S   F ++   + + GS+ GG+          A+  I 
Sbjct: 276 TLLKRDGTMTLVGA--PATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGI- 332

Query: 342 ILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 378
                  D E+         ++ ++IN A++ +++G 
Sbjct: 333 -----VADIEM---------IRADQINEAYERMLRGD 355

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} Length = 348

 Score = 88.0 bits (219), Expect = 1e-19
 Identities = 82/388 (21%), Positives = 138/388 (35%), Gaps = 78/388 (20%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            +Q +     +  E     +         +V + I+   +CHSD+     +    ++P I
Sbjct: 2   RVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMI 61

Query: 74  LGHEAIGVVESVGENVDGVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
            GHE  G+++ VG+ V     GDVV +  F+  C  C  C+  +   C+   F       
Sbjct: 62  PGHEIAGIIKEVGKGVKKFKIGDVVGVGCFVNSCKACKPCKEHQEQFCTKVVFTYD---- 117

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVG 191
                       E          +S   V+D  +V+ VD   P  +   L C G++T   
Sbjct: 118 ----CLDSFHDNEPHM-----GGYSNNIVVDENYVISVDKNAPLEKVAPLLCAGITT--- 165

Query: 192 AAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS---EKFE 240
             +   + + V  G+ V + G G +G      AVA GA          V V +    K +
Sbjct: 166 --YSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAE---------VSVFARNEHKKQ 214

Query: 241 IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKT 300
                GV  F        + +   II       D             + Y       G  
Sbjct: 215 DALSMGVKHFYTDPKQCKEELD-FIISTIPTHYDL------------KDYLKLLTYNGDL 261

Query: 301 IVLGVDQPGSQLSLSSFEVLHSG-KILMGSLFGGLK---------AKSDIPILLKRYMDK 350
            ++G+        LS F+ +H G + + GSL GG+K          K +I      Y + 
Sbjct: 262 ALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFSIKHNI------YPEI 315

Query: 351 ELELDKFVTHEMKFEEINSAFDLLIKGK 378
           +L         +  ++I++A+  L  GK
Sbjct: 316 DL---------ILGKDIDTAYHNLTHGK 334

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 49/325 (15%), Positives = 83/325 (25%), Gaps = 86/325 (26%)

Query: 15  IQCRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF--------- 60
           I  +A + T  GEP         E+  D    +EV V+ + + +  SD+           
Sbjct: 2   ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKP 61

Query: 61  -WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNL 119
                          G+E +  V  VG NV  +  GD VIP  +   T            
Sbjct: 62  AKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGT------------ 109

Query: 120 CSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD-------- 171
                                               +  + + +    +K+         
Sbjct: 110 ------------------------------------WRTHALGNDDDFIKLPNPAQSKAN 133

Query: 172 ---PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGARLCGA 226
                +  N+   +S    T          +  G    I   G  ++G   ++  +L   
Sbjct: 134 GKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF 193

Query: 227 TRIIGV----DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD---GGADYCFEC 279
              I V      + E     K  G T+ +       +     I +      G A     C
Sbjct: 194 -NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNC 252

Query: 280 VGLASLVQEAYACCRKGWGKTIVLG 304
           VG                G  +  G
Sbjct: 253 VG-GKSSTGIARKLNNN-GLMLTYG 275

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A Length = 360

 Score = 83.0 bits (206), Expect = 7e-18
 Identities = 74/390 (18%), Positives = 127/390 (32%), Gaps = 86/390 (22%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFPRIL 74
           A  +    +     +    P   H++ ++I    +C SD+      W     P V     
Sbjct: 11  AIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLV-V--- 66

Query: 75  GHEAIGVVESVGENVD-GVVEGDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           GHE +G V  +G   + G+  G  V +   +  C EC  C++     C+ F         
Sbjct: 67  GHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVT------- 119

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSC-GVSTGVG 191
              T       G      VS   ++ Y  +    VV +   +P + A  L C G++    
Sbjct: 120 ---TYSQPYEDGY-----VSQGGYANYVRVHEHFVVPIPENIPSHLAAPLLCGGLTV--- 168

Query: 192 AAW---RTANVEVGSTVVIFGLGSIG-----LAVAEGARLCGATRIIGVDVIS---EKFE 240
             +          G  V I GLG IG     ++ A GA            VIS    K E
Sbjct: 169 --YSPLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAE---------TYVISRSSRKRE 217

Query: 241 IGKRFGVTEFVNSKNCGD--KSVSQ---IIIDMTDGGADYCFECVGLASLVQEAYACCRK 295
              + G   ++ +   GD  +       +I+       D  F                 K
Sbjct: 218 DAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDIDF----------NIMPKAMK 267

Query: 296 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELEL- 354
             G+ + + +  P     LS          +  S  G +K   ++       +   L+L 
Sbjct: 268 VGGRIVSISI--PEQHEMLSLKPYGLKAVSISYSALGSIK---EL-----NQL---LKLV 314

Query: 355 -DKFVTHE-----MKFEEINSAFDLLIKGK 378
            +K +        +    ++ AF+ + KG 
Sbjct: 315 SEKDIKIWVETLPVGEAGVHEAFERMEKGD 344

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} Length = 340

 Score = 76.5 bits (189), Expect = 1e-15
 Identities = 48/292 (16%), Positives = 96/292 (32%), Gaps = 62/292 (21%)

Query: 18  RAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRI 73
           +       G P   L ++   ++P   +EV VR++   +  SD+             P I
Sbjct: 6   KLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNI 65

Query: 74  LGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
            G+E +G+VE+VG  V   + G  V+P                                 
Sbjct: 66  PGYEGVGIVENVGAFVSRELIGKRVLP--------------------------------- 92

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
                                ++ EY       VV +  ++    A  +     T     
Sbjct: 93  ----------------LRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQMYINPLTAWVTC 136

Query: 194 WRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN 252
             T N++    +++     +IG   A+ +++    R+I V   ++  E   R G    ++
Sbjct: 137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGAAYVID 195

Query: 253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVL 303
           +       + + ++++T+G GAD   + +G      E     R       + 
Sbjct: 196 TS---TAPLYETVMELTNGIGADAAIDSIG-GPDGNELAFSLR--PNGHFLT 241

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 Length = 327

 Score = 68.8 bits (169), Expect = 3e-13
 Identities = 42/281 (14%), Positives = 83/281 (29%), Gaps = 74/281 (26%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
                   G P  L   E     P  +E++V      +   D       +     P+   
Sbjct: 3   TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPS--- 59

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
             LG EA G+V  VG  V  +  GD V           +G                    
Sbjct: 60  -GLGTEAAGIVSKVGSGVKHIKAGDRV-----VYAQSALG-------------------- 93

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRA--CLLSCGVSTG 189
                                  ++S    +       +   +   +A    L      G
Sbjct: 94  -----------------------AYSSVHNIIADKAAILPAAISFEQAAASFLK-----G 125

Query: 190 VGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
           +       +T  ++     +     G +GL   + A+  GA  +IG    ++K +   + 
Sbjct: 126 LTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAK-LIGTVGTAQKAQSALKA 184

Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL 285
           G  + +N +   ++ + + + ++T G      ++ VG  + 
Sbjct: 185 GAWQVINYR---EEDLVERLKEITGGKKVRVVYDSVGRDTW 222

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} Length = 333

 Score = 68.4 bits (168), Expect = 5e-13
 Identities = 57/277 (20%), Positives = 95/277 (34%), Gaps = 61/277 (22%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF---WKMKDFPAVFPR 72
            AA+    G P   V +EV V  P   +VR+R     +   D                P 
Sbjct: 3   MAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPI 62

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           ++G EA  VVE VG  V     G+ V       C   +G                     
Sbjct: 63  VVGFEAAAVVEEVGPGVTDFTVGERV-----CTCLPPLG--------------------- 96

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVS--TGV 190
                                 ++S+  +     ++KV   +  +   L    +   T  
Sbjct: 97  ----------------------AYSQERLYPAEKLIKVPKDLDLDDVHLAGLMLKGMTAQ 134

Query: 191 GAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE 249
               +T  V+ G  V+I    G +G  +   AR  GAT +IG     EK E  ++ G   
Sbjct: 135 YLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGAT-VIGTVSTEEKAETARKLGCHH 193

Query: 250 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL 285
            +N      +  ++++ ++T G G D  ++ +G  +L
Sbjct: 194 TINYS---TQDFAEVVREITGGKGVDVVYDSIGKDTL 227

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* Length = 325

 Score = 68.4 bits (168), Expect = 5e-13
 Identities = 58/288 (20%), Positives = 94/288 (32%), Gaps = 88/288 (30%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF----WKMKDFPAVFP 71
           +    +  G P  L   +   + P    V VR     L   D  +    +     P+   
Sbjct: 3   KRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPS--- 59

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
             LG E  GVVE+VG+ V     GD V     A  T  +G                    
Sbjct: 60  -GLGAEGAGVVEAVGDEVTRFKVGDRV-----AYGTGPLG-------------------- 93

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                                  ++SE  VL  A++VK+      +        VS    
Sbjct: 94  -----------------------AYSEVHVLPEANLVKL-----AD-------SVSFEQA 118

Query: 192 AAW------------RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK 238
           AA             +T  V+ G  ++     G +G    + A+  GA  +IG     EK
Sbjct: 119 AALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGAK-LIGTVSSPEK 177

Query: 239 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASL 285
               K  G  E ++      + V++ ++++TDG      ++ VG  + 
Sbjct: 178 AAHAKALGAWETIDYS---HEDVAKRVLELTDGKKCPVVYDGVGQDTW 222

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha} Length = 379

 Score = 68.4 bits (167), Expect = 7e-13
 Identities = 53/405 (13%), Positives = 105/405 (25%), Gaps = 102/405 (25%)

Query: 13  KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF------------ 60
             +Q R+ I ++    L +D +    P   EV +RI  + L  SD+              
Sbjct: 4   SALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKA 63

Query: 61  -----------------WKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFL 103
                             +           +G+E  GVV   G +          +    
Sbjct: 64  SGTAERPIVTARVPEGAMRSMAGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTV---- 119

Query: 104 ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD 163
                                                          +  + +S+Y  + 
Sbjct: 120 ---------------------------------------------AAIGGAMYSQYRCIP 134

Query: 164 IAHVVKVDPTVPPNR-ACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGLGS-IGLAVA 218
               + +     P   A      ++     A     T  +E  S +V     S +G  + 
Sbjct: 135 ADQCLVLPEGATPADGASSFVNPLT-----ALGMVETMRLEGHSALVHTAAASNLGQMLN 189

Query: 219 EGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF 277
           +     G  +++ +    E+ ++ K  G     N+      +  Q + +     GA   F
Sbjct: 190 QICLKDGI-KLVNIVRKQEQADLLKAQGAVHVCNA---ASPTFMQDLTEALVSTGATIAF 245

Query: 278 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL-SLSSFEVLHSGKILMGSLFGGLKA 336
           +  G   L  +   C      K+         +    +  +  L +        FG    
Sbjct: 246 DATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLDTSPTEFNRNFGMAWG 305

Query: 337 KSD---IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK 378
                  P L K   ++   L + V       E+ + F      +
Sbjct: 306 MGGWLLFPFLQKIGRERANALKQRV-----VAELKTTFASHYSKE 345

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* Length = 334

 Score = 66.9 bits (164), Expect = 1e-12
 Identities = 52/272 (19%), Positives = 100/272 (36%), Gaps = 63/272 (23%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILG 75
           +  +    G    +  ++  V   +  E+ ++   T + + +  F K   +P   P +LG
Sbjct: 10  KVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGI-YPCEKPYVLG 68

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
            EA G V + G+ V     GD V                                     
Sbjct: 69  REASGTVVAKGKGVTNFEVGDQVA------------------------------------ 92

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYT-VLDIAHVVKVDPTVPPNRACLLSCGVSTGVGA-- 192
                         ++S S+F++Y+ +     V+K+          L + G+   + A  
Sbjct: 93  --------------YISNSTFAQYSKISSQGPVMKLPKGTSDEELKLYAAGLLQVLTALS 138

Query: 193 -AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF 250
                 +V+ G  V++F   G +GL + +  ++ GA   I V    EK +I K +G    
Sbjct: 139 FTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAH-TIAVASTDEKLKIAKEYGAEYL 197

Query: 251 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVG 281
           +N+     + + + ++  T+G G D  F+ VG
Sbjct: 198 INAS---KEDILRQVLKFTNGKGVDASFDSVG 226

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 64.9 bits (159), Expect = 7e-12
 Identities = 58/383 (15%), Positives = 116/383 (30%), Gaps = 97/383 (25%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDV-----TFWKMKDFPAVF 70
           +A      G P  L + +        +++ +++   SL   D      + +  K      
Sbjct: 8   KAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNL 67

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P  LG++  G V  +G +V+ V  GD V+                               
Sbjct: 68  PSGLGYDFSGEVIELGSDVNNVNIGDKVM----------------------GIA------ 99

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
                   F D              ++EY       +++    +   +A      + T  
Sbjct: 100 -------GFPDHPC----------CYAEYVCASPDTIIQKLEKLSFLQA----ASLPTAG 138

Query: 191 GAAW---RTANVEVGSTVVIF----GLGSIG--LAVAEGARLCGATRIIGVDVISEKFEI 241
             A      A V+ G  V+I     G+G +   LA  +G  +                  
Sbjct: 139 LTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTAS-------KRNHAF 191

Query: 242 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI 301
            K  G  + +N          +  +       D   + VG      ++  C ++  G  I
Sbjct: 192 LKALGAEQCINYH-------EEDFLLAISTPVDAVIDLVGGDVG-IQSIDCLKET-GC-I 241

Query: 302 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPIL--LKRYMDKELELDKFVT 359
           V        ++   + +              GL  + +I  L  L + + ++ +L   ++
Sbjct: 242 VSVPTITAGRVIEVAKQK--------HRRAFGLLKQFNIEELHYLGKLVSED-KLRIEIS 292

Query: 360 HEMKFEEINSAFDLL----IKGK 378
              +  E  +A +LL    ++GK
Sbjct: 293 RIFQLSEAVTAHELLETGHVRGK 315

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} Length = 342

 Score = 63.0 bits (154), Expect = 3e-11
 Identities = 54/304 (17%), Positives = 95/304 (31%), Gaps = 62/304 (20%)

Query: 6   PSNKTAGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM 63
                   P   +A  A +   P  LV  +V       + V V +    +C  D    K 
Sbjct: 11  TLEAQTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKG 70

Query: 64  K-DFPAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSA 122
           +       P + G E  GVV S           +                          
Sbjct: 71  EYQLKMEPPFVPGIETAGVVRSA---------PEGS------------------------ 97

Query: 123 FPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLL 182
              K                 G+ +  F  +  ++E   +  ++++   P +    A  L
Sbjct: 98  -GIKP----------------GDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVAL 140

Query: 183 SCGVSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
                T   A  R   +  G TV++ G  G IG A  + A+  GA ++I V   +   E 
Sbjct: 141 IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEF 199

Query: 242 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKT 300
            K  G    +      ++  ++ + + T G G D   + +G      +A        G+ 
Sbjct: 200 VKSVGADIVLPL----EEGWAKAVREATGGAGVDMVVDPIG-GPAFDDAVRTLASE-GRL 253

Query: 301 IVLG 304
           +V+G
Sbjct: 254 LVVG 257

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* Length = 362

 Score = 63.1 bits (154), Expect = 3e-11
 Identities = 48/290 (16%), Positives = 85/290 (29%), Gaps = 71/290 (24%)

Query: 1   MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTF 60
           +  E    ++  + +              +  +  V  P   ++ VR     +  SD+ +
Sbjct: 13  LGTENLYFQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINY 72

Query: 61  WKMKD---FPAVFPRILGHEAIGVVESVGENVDG-VVEGDVVIPHFLADCTECVGCRSKK 116
                        P  +G E IG V ++G +       G  V                  
Sbjct: 73  --SAGRYDPSVKPPFDIGFEGIGEVVALGLSASARYTVGQAVA----------------- 113

Query: 117 GNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP 176
                                            +++  SF+EYTV+  +    V P+V P
Sbjct: 114 ---------------------------------YMAPGSFAEYTVVPASIATPV-PSVKP 139

Query: 177 NRACLLSCGVSTGVGAAW----RTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIG 231
               LL  G +     A+        +  G  V++    G  G    + ++      +IG
Sbjct: 140 EYLTLLVSGTT-----AYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIG 193

Query: 232 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG 281
                EK    K  G    +N K    + V  ++      G D  +E VG
Sbjct: 194 TCSSDEKSAFLKSLGCDRPINYK---TEPVGTVLKQEYPEGVDVVYESVG 240

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 Length = 351

 Score = 61.8 bits (151), Expect = 7e-11
 Identities = 56/301 (18%), Positives = 98/301 (32%), Gaps = 60/301 (19%)

Query: 11  AGKPIQCRAAIATAPGEP--LVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMK-DF 66
           A      RA      G P  L +   I  P P  H+V +++    +   +          
Sbjct: 24  ATGQKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSR 83

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
             + P   G +  GV+E+VG+N     +GD V        +  +      G         
Sbjct: 84  KPLLPYTPGSDVAGVIEAVGDNASAFKKGDRVF------TSSTIS-----G--------- 123

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                                        ++EY +     V K+   +   +   +    
Sbjct: 124 ----------------------------GYAEYALAADHTVYKLPEKLDFKQGAAIGIPY 155

Query: 187 STGVGAAWRTANVEVGSTVVIFGLGS-IGLAVAEGARLCGATRIIGVDVISEKFEIGKRF 245
            T   A   +A V+ G +V++ G    +GLA  + AR  G  +I+G     E  +I  + 
Sbjct: 156 FTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQN 214

Query: 246 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLG 304
           G  E  N +   + +    I       G D   E +     + +  +    G G+ IV+G
Sbjct: 215 GAHEVFNHR---EVNYIDKIKKYVGEKGIDIIIEMLA-NVNLSKDLSLLSHG-GRVIVVG 269

Query: 305 V 305
            
Sbjct: 270 S 270

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} Length = 343

 Score = 61.5 bits (150), Expect = 1e-10
 Identities = 64/347 (18%), Positives = 110/347 (31%), Gaps = 91/347 (26%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-----MKDFPAVFPR 72
            AA+      P V+ ++    P   +V V+I  +     D    K             P 
Sbjct: 9   IAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLD---AKIRAGEAPHAQQPLPA 65

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP 132
           ILG +  G V +VG  VD    GD V            G                     
Sbjct: 66  ILGMDLAGTVVAVGPEVDSFRVGDAVF-----------GL-------------------- 94

Query: 133 RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLS----CGVST 188
              T     L+G          + +++  +D   +       P      L+      +  
Sbjct: 95  ---TGGVGGLQG----------THAQFAAVDARLLAS----KPAA----LTMRQASVLPL 133

Query: 189 GVGAAW----RTANVEVGSTVVIF----GLGS--IGLAVAEGARLCGATRIIGVDVISEK 238
               AW      A V+ G TV+I     G+G   I +A+A GAR+    R          
Sbjct: 134 VFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGARVFATAR-------GSD 186

Query: 239 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 297
            E  +  G T          +       + T G G D  ++ +G   ++  +++  ++  
Sbjct: 187 LEYVRDLGATPIDA-----SREPEDYAAEHTAGQGFDLVYDTLG-GPVLDASFSAVKRF- 239

Query: 298 GKTIVLGVDQPGSQLSLSSF-EVLHSGKILMGSLFGGLKAKSDIPIL 343
           G  +V  +     +L+  SF +  +SG   + +L           +L
Sbjct: 240 GH-VVSCLGWGTHKLAPLSFKQATYSGVFTLHTLLANEGLAHFGEML 285

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} Length = 315

 Score = 56.5 bits (137), Expect = 4e-09
 Identities = 15/87 (17%), Positives = 28/87 (32%), Gaps = 9/87 (10%)

Query: 18 RAAIATAPG---EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM---KDFPAVFP 71
                A       + ++ V +    + ++ V+     +   D   WK            
Sbjct: 3  EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVD---WKFIKANPINWSNG 59

Query: 72 RILGHEAIGVVESVGENVDGVVEGDVV 98
           + G +  GV+  VG  VD  + G  V
Sbjct: 60 HVPGVDGAGVIVKVGAKVDSKMLGRRV 86

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} Length = 346

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 9/87 (10%)

Query: 18 RAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFP 71
          +A     P             + +  P  HE+ V+I   S+   D    K +    +  P
Sbjct: 4  KAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVD---TKQRLMDVSKAP 60

Query: 72 RILGHEAIGVVESVGENVDGVVEGDVV 98
          R+LG +AIGVVESVG  V    +GD+V
Sbjct: 61 RVLGFDAIGVVESVGNEVTMFNQGDIV 87

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} Length = 363

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 18  RAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPR 72
           +A     P        L+  E+    P  H++ V +   S+   D    +         +
Sbjct: 24  KAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWK 83

Query: 73  ILGHEAIGVVESVGENVDGVVEGDVV 98
           ++G++A G+V +VG +V     GD V
Sbjct: 84  VIGYDAAGIVSAVGPDVTLFRPGDEV 109

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} Length = 375

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 25/103 (24%)

Query: 18  RAAIATAPGEP--LVIDEVIVDP--PNSHEVRVRIICTSLCHSDVTFWKM---------- 63
            A +    G+   L   + ++ P     +EV V++   S+   D     M          
Sbjct: 23  MAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPID---VNMRSGYGATALN 79

Query: 64  --------KDFPAVFPRILGHEAIGVVESVGENVDGVVEGDVV 98
                   K     FP  LG +  GVV   G +V     GD V
Sbjct: 80  MKRDPLHVKIKGEEFPLTLGRDVSGVVMECGLDVKYFKPGDEV 122

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-----DFPAVF 70
          RA +    G    L +    +  P   E+++R+    L   D+    M      D P   
Sbjct: 5  RAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDL----MVRQGNIDNPPKT 60

Query: 71 PRILGHEAIGVVESVGENVDGVVEGDVVI 99
          P + G E  G+VE++G++V G   GD V+
Sbjct: 61 PLVPGFECSGIVEALGDSVKGYEIGDRVM 89

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens} Length = 349

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 27/151 (17%), Positives = 53/151 (35%), Gaps = 9/151 (5%)

Query: 156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS-IG 214
           ++E     +  V K+   +  + A        T     +  AN+  G +V++   G  +G
Sbjct: 97  WAEVVCTPVEFVYKIPDDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVG 156

Query: 215 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD 274
            AVA+         + G    + K E  K   VT   +     +    Q +  ++  G D
Sbjct: 157 QAVAQLCSTVPNVTVFGT-ASTFKHEAIKD-SVTHLFDR----NADYVQEVKRISAEGVD 210

Query: 275 YCFECVGLASLVQEAYACCRKGWGKTIVLGV 305
              +C+       +  +  +   G  I+ G 
Sbjct: 211 IVLDCLC-GDNTGKGLSLLKPL-GTYILYGS 239

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 54/369 (14%), Positives = 97/369 (26%), Gaps = 152/369 (41%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           ++ ++        ID +I+            +          FW +              
Sbjct: 43  KSILSKE-----EIDHIIMSKDA--VSGTLRL----------FWTLLSKQE--------- 76

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
                E V + V+ V+  +     FL                    P K     P   T 
Sbjct: 77  -----EMVQKFVEEVLRINY---KFLMS------------------PIKTEQRQPSMMTR 110

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA 197
            + + R      +     F++Y V  +   +K+       R  LL               
Sbjct: 111 MYIEQRDRL---YNDNQVFAKYNVSRLQPYLKL-------RQALL--------------- 145

Query: 198 NVEVGSTVVIFGLGSIG---LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNS 253
            +     V+I G+   G   +A  +                S K +    F +  F +N 
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVA-LDVCL-------------SYKVQCKMDFKI--FWLNL 189

Query: 254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS 313
           KNC        +++M             L  L         +         +D   +  S
Sbjct: 190 KNCNSPET---VLEM-------------LQKL-------LYQ---------IDPNWTSRS 217

Query: 314 LSSFEV---LHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSA 370
             S  +   +HS +  +  L              K Y +  L L   V +     +  +A
Sbjct: 218 DHSSNIKLRIHSIQAELRRLL-----------KSKPYENCLLVLLN-VQN----AKAWNA 261

Query: 371 FDLLIKGKC 379
           F+L     C
Sbjct: 262 FNL----SC 266

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} Length = 353

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFPAVFPRIL 74
           R     + G P  +VI +  +      EV VR     +   D+   +     P     IL
Sbjct: 30  RFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPIL 89

Query: 75  GHEAIGVVESVGENVDGVVEGDVVI 99
           G E  G +  VG  V G   GD V 
Sbjct: 90  GLELSGEIVGVGPGVSGYAVGDKVC 114

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} Length = 349

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 2/93 (2%)

Query: 9   KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-DFP 67
              G       +   A    L    + V  P   +V +++   S+  SDV F K +   P
Sbjct: 17  VGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQP 76

Query: 68  AVFPRILGHEAIGVVESVGENVDGVVE-GDVVI 99
            V  R  G E +G + + G+        G  V 
Sbjct: 77  RVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVA 109

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} Length = 795

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 29  LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN 88
           LV +     P    EVR+ +    +   D     +  +P      LG E  GVV   G  
Sbjct: 226 LVDEPTATAPLGDGEVRIAMRAAGVNFRDA-LIALGMYPG--VASLGSEGAGVVVETGPG 282

Query: 89  VDGVVEGDVVI 99
           V G+  GD V+
Sbjct: 283 VTGLAPGDRVM 293

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* Length = 354

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 4/85 (4%)

Query: 18  RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRIL 74
            A     PG P  L + EV    P   EV +++  ++L  +D+   +   D P     IL
Sbjct: 24  LAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNIL 83

Query: 75  GHEAIGVVESVGENVDGVV-EGDVV 98
           G EA G V  +G    G    GD  
Sbjct: 84  GLEASGHVAELGPGCQGHWKIGDTA 108

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)

Query: 202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           G  ++I+G G IG ++A  A   G   +IGV+
Sbjct: 137 GQQLLIYGTGQIGQSLAAKASALGM-HVIGVN 167

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	388
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	100.0
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	100.0
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	100.0
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	100.0
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	100.0
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	100.0
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	100.0
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	100.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	100.0
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	100.0
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	100.0
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	100.0
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	100.0
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	100.0
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	100.0
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	100.0
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	100.0
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	100.0
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	100.0
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	100.0
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	100.0
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	100.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	100.0
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	100.0
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	100.0
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	100.0
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	100.0
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	100.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	100.0
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	100.0
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	100.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	100.0
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	100.0
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	100.0
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	100.0
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	100.0
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	100.0
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	100.0
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	100.0
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	100.0
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	100.0
3gms_A	340	Putative NADPH:quinone reductase; structural genom	100.0
4eye_A	342	Probable oxidoreductase; structural genomics, niai	100.0
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	100.0
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	100.0
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	100.0
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	100.0
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	100.0
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	100.0
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	100.0
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	100.0
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	100.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	100.0
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	100.0
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	100.0
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	100.0
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	100.0
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	100.0
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	100.0
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	100.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	100.0
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	100.0
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	100.0
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	100.0
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	100.0
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	100.0
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	100.0
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	100.0
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	100.0
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.88
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.18
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.98
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.74
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.65
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.64
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.55
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.51
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.4
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.06
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.04
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.03
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	97.97
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.9
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	97.88
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.84
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.76
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.76
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.74
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.72
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.69
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.62
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.49
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	97.46
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.45
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.44
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.35
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.33
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.27
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	97.24
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.11
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	97.01
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.93
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	96.86
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.84
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.84
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	96.82
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.82
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	96.81
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.8
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.8
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.8
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	96.79
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	96.75
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.75
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.74
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	96.73
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	96.72
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	96.71
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	96.7
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.7
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.7
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.7
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.7
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	96.69
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	96.68
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	96.68
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.67
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.67
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	96.63
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	96.61
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.6
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.59
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	96.58
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	96.58
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	96.56
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	96.56
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	96.56
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.56
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.54
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	96.54
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.53
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.52
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.5
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	96.5
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.49
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	96.49
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.47
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.47
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.46
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.46
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.46
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	96.45
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	96.45
4dqx_A	277	Probable oxidoreductase protein; structural genomi	96.44
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	96.43
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.43
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	96.43
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	96.43
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	96.4
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	96.4
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	96.4
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.39
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	96.39
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	96.38
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	96.37
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	96.37
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.37
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	96.36
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	96.36
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	96.36
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.35
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	96.34
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.34
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	96.34
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	96.33
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	96.33
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	96.32
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	96.32
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.32
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.31
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	96.31
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.31
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.31
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.3
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.3
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	96.3
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.29
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.29
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	96.29
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	96.29
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.28
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	96.27
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.27
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	96.27
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.27
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.26
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.26
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	96.25
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.25
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	96.25
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.25
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	96.24
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	96.24
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.24
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	96.23
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	96.23
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.22
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	96.22
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.22
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.21
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	96.21
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	96.2
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	96.2
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	96.2
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.19
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	96.19
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	96.18
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	96.18
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.17
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	96.16
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.15
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.15
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	96.15
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	96.15
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	96.15
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	96.14
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.14
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	96.13
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	96.13
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	96.12
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.12
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.12
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.11
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.11
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.11
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.11
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.1
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.1
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	96.1
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.09
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	96.08
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	96.08
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	96.08
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.08
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.07
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.07
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	96.07
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.06
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.05
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	96.05
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	96.05
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.05
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.05
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.04
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.04
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	96.04
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	96.03
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.03
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	96.02
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.02
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	96.02
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.02
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.01
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.01
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.01
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	96.01
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.0
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.0
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	95.99
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.99
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	95.99
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	95.98
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	95.97
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	95.96
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	95.96
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	95.95
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	95.94
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	95.94
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	95.94
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	95.93
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.92
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.9
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	95.9
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	95.9
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	95.9
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	95.9
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	95.89
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.89
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	95.88
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.88
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	95.87
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.86
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	95.86
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	95.85
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	95.85
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	95.84
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	95.83
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	95.83
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	95.83
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	95.82
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	95.82
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	95.82
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	95.81
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.81
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	95.8
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.8
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.79
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.79
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.78
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	95.78
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	95.75
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	95.75
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	95.75
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	95.75
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	95.74
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	95.74
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	95.73
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	95.72
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	95.71
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.71
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	95.71
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	95.7
1xkq_A	280	Short-chain reductase family member (5D234); parra	95.7
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.7
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	95.69
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	95.69
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.69
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.68
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.68
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.67
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.66
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.66
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.65
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	95.65
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.65
1spx_A	278	Short-chain reductase family member (5L265); paral	95.64
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	95.64
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	95.64
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.63
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.62
1xhl_A	297	Short-chain dehydrogenase/reductase family member	95.62
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	95.62
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	95.6
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	95.59
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	95.59
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.57
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	95.57
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	95.57
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	95.57
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	95.57
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.56
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	95.55
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	95.55
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.55
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	95.54
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	95.54
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	95.54
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	95.52
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	95.52
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	95.51
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	95.51
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	95.5
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	95.5
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	95.49
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	95.48
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	95.48
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	95.48
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.46
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	95.46
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	95.45
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	95.44
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.44
4had_A	350	Probable oxidoreductase protein; structural genomi	95.43
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	95.43
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	95.43
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	95.42
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	95.42
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	95.41
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	95.41
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	95.4
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	95.4
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.39
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	95.39
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	95.38
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.37
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	95.37
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.36
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.36
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	95.35
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	95.35
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.34
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.34
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.33
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	95.32
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.32
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	95.32
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	95.32
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	95.31
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	95.31
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	95.31
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	95.31
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	95.31
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.3
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.3
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	95.29
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	95.28
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	95.26
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	95.26
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	95.26
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.25
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	95.25
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	95.24
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.24
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	95.23
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	95.23
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.23
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.22
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	95.22
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.22
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.21
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	95.21
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	95.17
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	95.17
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	95.16
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	95.15
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	95.15
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.15
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	95.15
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.14
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	95.13
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.12
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	95.11
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	95.1
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	95.09
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.09
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.08
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.06
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	95.06
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	95.05
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	95.04
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.03
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	95.02
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	95.0
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	94.98
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	94.98
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	94.97
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	94.96
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	94.92
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.91
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	94.87
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	94.87
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	94.85
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	94.85
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	94.84
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	94.81
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	94.8
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	94.8
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	94.8
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	94.79
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	94.78
3qha_A	296	Putative oxidoreductase; seattle structural genomi	94.77
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.74
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	94.74
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	94.73
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	94.73
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	94.73
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.72
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	94.71
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	94.71
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	94.7
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	94.7
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	94.69
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	94.69
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	94.68
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	94.68
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	94.66
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	94.66
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.66
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	94.65
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	94.62
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	94.6
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	94.57
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	94.55
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	94.55
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	94.54
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	94.5
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	94.5
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	94.49
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	94.49
4h3v_A	390	Oxidoreductase domain protein; structural genomics	94.48
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	94.47
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	94.46
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.46
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.45
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.43
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	94.42
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	94.42
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	94.42
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	94.4

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=100.00  E-value=1.2e-65  Score=491.85  Aligned_cols=376  Identities=49%  Similarity=0.955  Sum_probs=330.5

Q ss_pred             CCCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      +.++|++|||+++++++++++++++|.|+|+++||||||.+++||++|+++++|..+...+|.++|||++|+|+++|++|
T Consensus         2 ~~~~~~tmkA~v~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v   81 (378)
T 3uko_A            2 TQGQVITCKAAVAYEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGV   81 (378)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEECTTC
T ss_pred             CcccceeeEEEEEecCCCccEEEEecCCCCCCCeEEEEEEEeecCHHHHHHhcCCCCCCCCCccCCccceEEEEEeCCCC
Confidence            45678999999999999889999999999999999999999999999999999987777889999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      ++|++||||++.+..+|+.|.+|++|++++|.+.......|+. .+|..++. .+|...+..++.|+|+||+.++.++++
T Consensus        82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~  160 (378)
T 3uko_A           82 TEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFS-VNGKPIYHFMGTSTFSQYTVVHDVSVA  160 (378)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHHTSCSCCCSSHHHHTTTCCTTTSSCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEE
T ss_pred             CcCCCCCEEEEecCCCCCCChhhhCcCcCcCcCcccccccccccccCccccc-cCCcccccccCCcceEeEEEechhheE
Confidence            9999999999999999999999999999999986542223333 33322222 234444445666899999999999999


Q ss_pred             EcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc
Q 016507          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (388)
Q Consensus       169 ~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~  248 (388)
                      ++|+++++++||++++++.|||+++++.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|++
T Consensus       161 ~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~  240 (378)
T 3uko_A          161 KIDPTAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVN  240 (378)
T ss_dssp             ECCTTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCC
T ss_pred             ECCCCCCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc
Confidence            99999999999999999999999888889999999999999999999999999999998899999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEE
Q 016507          249 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  328 (388)
Q Consensus       249 ~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  328 (388)
                      +++|+++ ...++.+.+++++++++|+||||+|++..+..+++++++++|+++.+|........+++...++. ++++.|
T Consensus       241 ~vi~~~~-~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~-~~~i~g  318 (378)
T 3uko_A          241 EFVNPKD-HDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLVT-GRVWKG  318 (378)
T ss_dssp             EEECGGG-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHT-TCEEEE
T ss_pred             EEEcccc-CchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHhc-CcEEEE
Confidence            9999872 11678999999998899999999999877999999999922999999986555566777766665 899999


Q ss_pred             eeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEeeCC
Q 016507          329 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE  388 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~~~  388 (388)
                      ++++.+...++++++++++.+|++++.++++++|||+++++|++.+.+++..|+||++++
T Consensus       319 ~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~g~~~Kvvi~~~~  378 (378)
T 3uko_A          319 TAFGGFKSRTQVPWLVEKYMNKEIKVDEYITHNLTLGEINKAFDLLHEGTCLRCVLDTSK  378 (378)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHTTCTTCSEEEEETTC
T ss_pred             EEecCCCchHHHHHHHHHHHcCCCChhHheeeEeeHHHHHHHHHHHHCCCceEEEEecCC
Confidence            987666556789999999999999999999999999999999999998887799999875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=100.00  E-value=2e-62  Score=468.86  Aligned_cols=370  Identities=40%  Similarity=0.721  Sum_probs=314.2

Q ss_pred             CCCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      +.++||+|||+++.+++++++++++|.|+|+++||||||.+++||++|++++.|.++ ..+|.++|||++|+|+++|++|
T Consensus         3 ~~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v   81 (373)
T 1p0f_A            3 TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIP-SKFPVILGHEAVGVVESIGAGV   81 (373)
T ss_dssp             CTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCCEEEEEEEECTTC
T ss_pred             ccCCcceeEEEEEEcCCCCeeEEEeeCCCCCCCeEEEEEeEEeecchhHHHhcCCCC-CCCCcccCcCceEEEEEECCCC
Confidence            455789999999999987799999999999999999999999999999999998765 5679999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      ++|++||||++.+...|+.|.+|++|++++|.+.......|+..+|..++. .+|...+.....|+|+||+++|++++++
T Consensus        82 ~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~  160 (373)
T 1p0f_A           82 TCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAK  160 (373)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSEEE
T ss_pred             CccCCCCEEEECCCCCCCCChhhcCCCcCcCcCCCcccccccccCCccccc-cCCcccccccCCccceeEEEEchhhEEE
Confidence            999999999999999999999999999999997653211233322211110 0111111122347999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +|++++++ ||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|+++
T Consensus       161 iP~~l~~~-aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~  239 (373)
T 1p0f_A          161 IDPKAPLE-SCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATE  239 (373)
T ss_dssp             ECTTCCGG-GGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSE
T ss_pred             CCCCCChh-hhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcE
Confidence            99999999 99999999999998878889999999999999999999999999999978999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCC-ceEEEEccCCCCCccccCHHHHHhcCcEEEE
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  328 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  328 (388)
                      ++|+++. .+++.+.+++++++++|+||||+|....+..+++++++ + |+++.+|.........++...++.++ ++.|
T Consensus       240 vi~~~~~-~~~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g  316 (373)
T 1p0f_A          240 CLNPKDY-DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC-GSGVTVVLGLASPNERLPLDPLLLLTGR-SLKG  316 (373)
T ss_dssp             EECGGGC-SSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECCCCCTTCCEEECTHHHHTTC-EEEE
T ss_pred             EEecccc-cchHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhc-CCCEEEEEccCCCCCccccCHHHhccCc-eEEe
Confidence            9987631 14688889888877999999999997779999999999 7 99999997543345667777777777 9999


Q ss_pred             eeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          329 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      ++.+.+. .++++++++++++|++++.++++++|||+++++|++.+++++..|+||++
T Consensus       317 ~~~~~~~-~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 1p0f_A          317 SVFGGFK-GEEVSRLVDDYMKKKINVNFLVSTKLTLDQINKAFELLSSGQGVRSIMIY  373 (373)
T ss_dssp             CSGGGCC-GGGHHHHHHHHHTTSSCGGGGEEEEECGGGHHHHHHHTTTSSCSEEEEEC
T ss_pred             eccCCcC-HHHHHHHHHHHHcCCCCchheEEEEeeHHHHHHHHHHHHCCCcceEEEeC
Confidence            8654432 26899999999999998888999999999999999999887777999875

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=100.00  E-value=2.9e-62  Score=467.87  Aligned_cols=371  Identities=40%  Similarity=0.756  Sum_probs=315.3

Q ss_pred             CCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCC
Q 016507           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      ..+||+|||+++.+++++++++++|.|+|+++||||||.+++||++|++++.|.++. .+|.++|||++|+|+++|++|+
T Consensus         3 ~~~~~~mkA~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~-~~P~v~GhE~~G~V~~vG~~v~   81 (374)
T 2jhf_A            3 AGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGVT   81 (374)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTCC
T ss_pred             CCCceeEEEEEEecCCCceEEEEccCCCCCCCeEEEEEeEEeechhhHHHHcCCCCC-CCCcccCcCceEEEEEECCCCC
Confidence            457899999999999877999999999999999999999999999999999987654 3799999999999999999999


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEc
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l  170 (388)
                      +|++||||++.+...|+.|.+|++|++++|.+.......|+..+|..++. ..|...+.....|+|+||+++|+++++++
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~i  160 (374)
T 2jhf_A           82 TVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFT-CRGKPIHHFLGTSTFSQYTVVDEISVAKI  160 (374)
T ss_dssp             SCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEECCCCCCCCCccccCCCcCcCCCCccccccccccCCccccc-ccccccccccCCccCeeEEEEchHHeEEC
Confidence            99999999999999999999999999999997654211233322211110 00111111223479999999999999999


Q ss_pred             CCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       171 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      |+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|+++++++++.++++++|++++
T Consensus       161 P~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~v  240 (374)
T 2jhf_A          161 DAASPLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATEC  240 (374)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEE
T ss_pred             CCCCCHHHhhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceE
Confidence            99999999999999999999988788899999999999999999999999999999789999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCC-ceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      +|+++. .+++.+.+++.+++++|+|||++|....+..+++++++ + |+++.+|.........++...++.++ ++.|+
T Consensus       241 i~~~~~-~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~  317 (374)
T 2jhf_A          241 VNPQDY-KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQE-AYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGA  317 (374)
T ss_dssp             ECGGGC-SSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCT-TTCEEEECSCCCTTCCEEECTHHHHTTC-EEEEC
T ss_pred             eccccc-chhHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhc-CCcEEEEeccCCCCCccccCHHHHhcCC-eEEEe
Confidence            987631 14588888888877999999999997778999999999 7 99999997543345667777777777 99998


Q ss_pred             eecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          330 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      +.+.+...++++++++++++|++++.++++++|||+++++|++.+.+++..|+||++
T Consensus       318 ~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  374 (374)
T 2jhf_A          318 IFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEKINEGFDLLRSGESIRTILTF  374 (374)
T ss_dssp             SGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             ccCCCChHHHHHHHHHHHHcCCCCchhheEEEEeHHHHHHHHHHHHCCCcceEEEeC
Confidence            765443346799999999999998888999999999999999999888777999875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.1e-62  Score=466.88  Aligned_cols=371  Identities=42%  Similarity=0.773  Sum_probs=315.5

Q ss_pred             CCCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCccccc-ccccCCCCCCCCcccccceeEEEEEecCC
Q 016507           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVT-FWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      +..+||+|||+++.+++++++++++|.|+|+++||||||.+++||++|++ ++.|.++ ..+|.++|||++|+|+++|++
T Consensus         2 ~~~~~~~mka~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~   80 (374)
T 1cdo_A            2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHK-DGFPVVLGHEGAGIVESVGPG   80 (374)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCT-TSCSEECCCCEEEEEEEECTT
T ss_pred             CCCCcceeEEEEEecCCCCeEEEEeeCCCCCCCEEEEEEeEEeechhhHHHHhCCCCC-CCCCcccCccceEEEEEECCC
Confidence            45688999999999998779999999999999999999999999999999 8888765 567999999999999999999


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      |++|++||||++.+..+|+.|.+|++|++++|.+.......|+..+|..++. .+|...+.....|+|+||+++|+++++
T Consensus        81 V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~  159 (374)
T 1cdo_A           81 VTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRFT-CKGRKVLQFLGTSTFSQYTVVNQIAVA  159 (374)
T ss_dssp             CCSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCEE-ETTEEEEEGGGTCCSBSEEEEEGGGEE
T ss_pred             CccCCCCCEEEeCCCCCCCCChhhcCCCcCcCCCcccccccccccCCccccc-cCCcccccccCCccceeEEEEchhheE
Confidence            9999999999999999999999999999999987653211233323211110 011111112234799999999999999


Q ss_pred             EcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc
Q 016507          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (388)
Q Consensus       169 ~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~  248 (388)
                      ++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|+++++++++.++++++|++
T Consensus       160 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~  239 (374)
T 1cdo_A          160 KIDPSAPLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT  239 (374)
T ss_dssp             ECCTTCCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred             ECCCCCCHHHHhhhccHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCc
Confidence            99999999999999999999999887888999999999999999999999999999997899999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCC-ceEEEEccCCCCCccccCHHHHHhcCcEEE
Q 016507          249 EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQPGSQLSLSSFEVLHSGKILM  327 (388)
Q Consensus       249 ~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  327 (388)
                      +++|+++. .+++.+.+++.+++++|+|||++|....+..+++++++ + |+++.+|.... ....++...++.+. ++.
T Consensus       240 ~vi~~~~~-~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~-~~~~~~~~~~~~~~-~i~  315 (374)
T 1cdo_A          240 DFVNPNDH-SEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLK-GWGVSVLVGWTDL-HDVATRPIQLIAGR-TWK  315 (374)
T ss_dssp             EEECGGGC-SSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCSS-SCEEECHHHHHTTC-EEE
T ss_pred             eEEecccc-chhHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhc-CCcEEEEEcCCCC-CCcccCHHHHhcCC-eEE
Confidence            99987631 14688888888877999999999997778999999999 7 99999997543 45667777777777 999


Q ss_pred             EeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          328 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      |++...+...++++++++++++|++++.++++++|||+++++|++.+++++.+|+||++
T Consensus       316 g~~~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  374 (374)
T 1cdo_A          316 GSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  374 (374)
T ss_dssp             ECSGGGCCHHHHHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEecCCCCcHHHHHHHHHHHHcCCCChHHheeeEecHHHHHHHHHHHHCCCeeEEEEeC
Confidence            98655443356799999999999998888999999999999999999888777999875

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=100.00  E-value=3.3e-62  Score=467.82  Aligned_cols=369  Identities=41%  Similarity=0.738  Sum_probs=312.5

Q ss_pred             CCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCC
Q 016507           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      ...||+|||+++.+++.+++++++|.|+|+++||||||.+++||++|++++.|. +...+|.++|||++|+|+++|++|+
T Consensus         3 ~~~p~~mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~-~~~~~P~v~GhE~~G~V~~vG~~v~   81 (376)
T 1e3i_A            3 QGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPK-KKALFPVVLGHECAGIVESVGPGVT   81 (376)
T ss_dssp             TTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTT-SCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CCCChheeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEeEEeEchhhHHHhcCC-CCCCCCcccCccccEEEEEECCCCc
Confidence            456899999999999877999999999999999999999999999999999886 4456899999999999999999999


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCC----CCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCc
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFP----FKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~----~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~  166 (388)
                      +|++||||++.+...|+.|.+|++|+++.|.+..    +....|+..+|..++. .+|.........|+|+||+++|+++
T Consensus        82 ~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~G~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~  160 (376)
T 1e3i_A           82 NFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFT-CKGRSIYHFMGVSSFSQYTVVSEAN  160 (376)
T ss_dssp             SCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGG
T ss_pred             cCCCCCEEEECCcCCCCCCccccCCCcccCcCcCccccccccccccccCccccc-cCCcccccccCCccceeEEEecccc
Confidence            9999999999999999999999999999998754    1000133222211110 0011111122346999999999999


Q ss_pred             eEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC
Q 016507          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (388)
Q Consensus       167 ~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg  246 (388)
                      ++++|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|
T Consensus       161 ~~~iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lG  240 (376)
T 1e3i_A          161 LARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALG  240 (376)
T ss_dssp             EEECCTTCCHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             EEECCCCCCHHHhhhhccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhC
Confidence            99999999999999999999999998878889999999999999999999999999999978999999999999999999


Q ss_pred             CcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCC-ceEEEEccCCCCCccccCHHHHHhcCcE
Q 016507          247 VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQPGSQLSLSSFEVLHSGKI  325 (388)
Q Consensus       247 a~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~  325 (388)
                      +++++|+++. .+++.+.+++.+++++|+||||+|....++.+++++++ + |+++.+|..  .....++...++.++ +
T Consensus       241 a~~vi~~~~~-~~~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~-~~G~iv~~G~~--~~~~~~~~~~~~~~~-~  315 (376)
T 1e3i_A          241 ATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVL-GWGSCTVVGAK--VDEMTIPTVDVILGR-S  315 (376)
T ss_dssp             CSEEECGGGC-SSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCT-TTCEEEECCCS--SSEEEEEHHHHHTTC-E
T ss_pred             CcEEEccccc-cchHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhc-CCCEEEEECCC--CCccccCHHHhhccC-e
Confidence            9999987631 14688888888877999999999997778999999999 6 999999973  345667777777778 9


Q ss_pred             EEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          326 LMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       326 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      +.|++.+.+...++++++++++++|++++.++++++|||+++++|++.+++++.+|+||++
T Consensus       316 i~g~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvi~~  376 (376)
T 1e3i_A          316 INGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFESINDAIDLMKEGKSIRTILTF  376 (376)
T ss_dssp             EEECSGGGCCHHHHHHHHHHHHHTTSSCGGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEecCCCCcHHHHHHHHHHHHcCCCCcHHhEeeeecHHHHHHHHHHHhcCCcceEEEeC
Confidence            9998655443356799999999999998888999999999999999999888777999875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=100.00  E-value=1.6e-62  Score=469.60  Aligned_cols=371  Identities=43%  Similarity=0.810  Sum_probs=314.3

Q ss_pred             CCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCC
Q 016507           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        12 ~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      +.||+|||+++.+++++++++++|.|+|+++||||||.+++||++|++++.|.++...+|.++|||++|+|+++|++|++
T Consensus         2 ~~p~~mkA~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~   81 (373)
T 2fzw_A            2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (373)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCccceEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEEEEchhhHHHhcCCCCCCCCCccccccccEEEEEECCCCCC
Confidence            56899999999999877999999999999999999999999999999999997665578999999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      |++||||++.+..+|+.|.+|++|++++|.+.......|+..+|..++. .+|...+.....|+|+||+++|+++++++|
T Consensus        82 ~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~-~~g~~~~~~~~~G~~aey~~v~~~~~~~iP  160 (373)
T 2fzw_A           82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKID  160 (373)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEECCCCCCCCChHHcCcCcccCCCcccccccccccCCccccc-ccccccccccCCccceeEEEEchhheEECC
Confidence            9999999999999999999999999999986532100122222211110 011111112234799999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      +++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+.+|+++++++++.++++++|+++++
T Consensus       161 ~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi  240 (373)
T 2fzw_A          161 PLAPLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI  240 (373)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEE
T ss_pred             CCCCHHHHhhhccHHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEe
Confidence            99999999999999999999887888999999999999999999999999999997899999999999999999999999


Q ss_pred             cCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCC-ceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          252 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW-GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      |+++. ..++.+.+++.+++++|+||||+|....+..+++++++ + |+++.+|........+++...++.++ ++.|++
T Consensus       241 ~~~~~-~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~-~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~  317 (373)
T 2fzw_A          241 NPQDF-SKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHK-GWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTA  317 (373)
T ss_dssp             CGGGC-SSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCT-TTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECS
T ss_pred             ccccc-cccHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhcc-CCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEec
Confidence            87631 14688888888877999999999997778999999999 7 99999997543345667777777777 999986


Q ss_pred             ecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          331 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      ...+...++++++++++++|++++.++++++|||+++++|++.+++++..|+||++
T Consensus       318 ~~~~~~~~~~~~~~~l~~~g~l~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvi~~  373 (373)
T 2fzw_A          318 FGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  373 (373)
T ss_dssp             GGGCCHHHHHHHHHHHHHTTSSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             cCCCCcHHHHHHHHHHHHcCCCCchheEeEEeeHHHHHHHHHHHhCCCcceEEEeC
Confidence            55443356799999999999998888999999999999999999888778999875

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-62  Score=469.09  Aligned_cols=367  Identities=29%  Similarity=0.501  Sum_probs=312.4

Q ss_pred             CcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCC
Q 016507           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      +|+|||+++.+++.+++++++|.|+|+++||||||.+++||++|++++.|.++ ..+|.++|||++|+|+++|++|++|+
T Consensus         4 ~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~P~v~GhE~~G~V~~vG~~v~~~~   82 (371)
T 1f8f_A            4 LKDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYP-VPLPAVLGHEGSGIIEAIGPNVTELQ   82 (371)
T ss_dssp             CEEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSBCCCCEEEEEEEEECTTCCSCC
T ss_pred             cccceEEEEcCCCCCeEEEEecCCCCCCCEEEEEEEEeecCchhHHHHcCCCC-CCCCcccCcccceEEEEeCCCCCCCC
Confidence            57899999999987799999999999999999999999999999999998765 46799999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCcee-cccccccceeeeEEeecCceEEcCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETI-HHFVSVSSFSEYTVLDIAHVVKVDP  172 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~-~~~~~~g~~a~~~~~~~~~~~~lP~  172 (388)
                      +||||++.+ .+|+.|.+|++|++++|.+.......|+..+|..++...+|... ......|+|+||++++.++++++|+
T Consensus        83 ~GdrV~~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~~g~~~~~~~~g~~~~~~~~~~G~~aey~~v~~~~~~~iP~  161 (371)
T 1f8f_A           83 VGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTK  161 (371)
T ss_dssp             TTCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECT
T ss_pred             CCCEEEecC-CCCCCChhhhCcCccccccccccccccccccccccccccCCccccccccCCccccCeEEechhheEECCC
Confidence            999999999 99999999999999999865421111222222111100000000 0012347999999999999999999


Q ss_pred             CCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      ++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+++|+++++++++.++++++|+++++|
T Consensus       162 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~  241 (371)
T 1f8f_A          162 DVPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVIN  241 (371)
T ss_dssp             TSCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEE
T ss_pred             CCCHHHHHHhcchHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEec
Confidence            99999999999999999998878889999999999999999999999999999977999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          253 SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      +++   .++.+.+++.+++++|+|||++|....++.++++++++ |+++.+|.........+++..++.+++++.|++..
T Consensus       242 ~~~---~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~  317 (371)
T 1f8f_A          242 SKT---QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEG  317 (371)
T ss_dssp             TTT---SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGG
T ss_pred             CCc---cCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCC
Confidence            887   77888899888779999999999977789999999997 99999997543345678888888899999998765


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEeeC
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  387 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~~  387 (388)
                      .+...++++++++++++|++++.+++++ |||+++++|++.+++++.+|+||++.
T Consensus       318 ~~~~~~~~~~~~~l~~~g~l~~~~~i~~-~~l~~~~~A~~~~~~~~~~Kvvv~~~  371 (371)
T 1f8f_A          318 SGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDSRKGITLKPIIKIA  371 (371)
T ss_dssp             GSCHHHHHHHHHHHHHTTSCCGGGGEEE-EEGGGHHHHHHHHHHTSCSEEEEECC
T ss_pred             CCchHHHHHHHHHHHHcCCCCcccceeE-ecHHHHHHHHHHHHCCCceEEEEeeC
Confidence            4333467899999999999988888988 99999999999998877789999864

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=100.00  E-value=5.4e-62  Score=464.74  Aligned_cols=346  Identities=21%  Similarity=0.357  Sum_probs=309.1

Q ss_pred             CCCCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCC
Q 016507            9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus         9 ~~~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      +...+|++|||+++.+++. ++++++|.|+|+++||||||.|++||++|++.+.|.++ ..+|.++|||++|+|+++|++
T Consensus        16 ~~~~~p~~mkA~v~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~p~v~G~e~~G~V~~vG~~   93 (370)
T 4ej6_A           16 ENLYFQSMMKAVRLESVGN-ISVRNVGIPEPGPDDLLVKVEACGICGTDRHLLHGEFP-STPPVTLGHEFCGIVVEAGSA   93 (370)
T ss_dssp             -----CCEEEEEEEEETTE-EEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTSSC-CCSSEECCCSEEEEEEEECTT
T ss_pred             cccccchheEEEEEecCCc-eEEEEccCCCCCCCeEEEEEEEEeecHHHHHHHcCCCC-CCCCeecCcceEEEEEEECCC
Confidence            3355788899999999975 99999999999999999999999999999999999864 467999999999999999999


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      |++|++||||++.+...|+.|.+|+.|+++.|.+...   +|+..+|                   +|+||++++.++++
T Consensus        94 v~~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~  151 (370)
T 4ej6_A           94 VRDIAPGARITGDPNISCGRCPQCQAGRVNLCRNLRA---IGIHRDG-------------------GFAEYVLVPRKQAF  151 (370)
T ss_dssp             CCSSCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCccc---cCCCCCC-------------------cceEEEEEchhhEE
Confidence            9999999999999999999999999999999998765   5555555                   99999999999999


Q ss_pred             EcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc
Q 016507          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (388)
Q Consensus       169 ~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~  248 (388)
                      ++|+++++++|| +..++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|+++++++++.++++++|++
T Consensus       152 ~~P~~~~~~~aa-l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~  229 (370)
T 4ej6_A          152 EIPLTLDPVHGA-FCEPLACCLHGV-DLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT  229 (370)
T ss_dssp             EECTTSCTTGGG-GHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS
T ss_pred             ECCCCCCHHHHh-hhhHHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC
Confidence            999999999998 555999999976 788999999999999999999999999999998899999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHh---hcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcE
Q 016507          249 EFVNSKNCGDKSVSQIIID---MTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKI  325 (388)
Q Consensus       249 ~v~~~~~~~~~~~~~~i~~---~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  325 (388)
                      +++|+++   .++.+.+++   ++++++|+||||+|....+..++++++++ |+++.+|........+++...++.++++
T Consensus       230 ~vi~~~~---~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~-G~vv~~G~~~~~~~~~~~~~~~~~~~~~  305 (370)
T 4ej6_A          230 ATVDPSA---GDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAG-GTVVILGVLPQGEKVEIEPFDILFRELR  305 (370)
T ss_dssp             EEECTTS---SCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECSCCCTTCCCCCCHHHHHHTTCE
T ss_pred             EEECCCC---cCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccC-CEEEEEeccCCCCccccCHHHHHhCCcE
Confidence            9999987   788888888   77779999999999887799999999997 9999999865545678888899999999


Q ss_pred             EEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce--eEEEEeeCC
Q 016507          326 LMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC--LRCVIWMGE  388 (388)
Q Consensus       326 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~--~kvvv~~~~  388 (388)
                      +.|++...    .+++++++++++|++++.++++++|||+++++|++.+.++..  +|+++++++
T Consensus       306 i~g~~~~~----~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~kvv~~~~~  366 (370)
T 4ej6_A          306 VLGSFINP----FVHRRAADLVATGAIEIDRMISRRISLDEAPDVISNPAAAGEVKVLVIPSAER  366 (370)
T ss_dssp             EEECCSCT----TCHHHHHHHHHTTCSCCGGGEEEEECGGGHHHHHHSCCCTTCSEEEECCC---
T ss_pred             EEEeccCh----HHHHHHHHHHHcCCCChhHcEEEEEEHHHHHHHHHHHHcCCCCeEEEEEcccc
Confidence            99986433    569999999999999999999999999999999999987663  488887754

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=100.00  E-value=3.4e-60  Score=449.14  Aligned_cols=340  Identities=23%  Similarity=0.353  Sum_probs=302.3

Q ss_pred             eeeeeecCCCCCeEEEEeecCC-CCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++.+++. ++++|+|+|+ ++||||||||.|+|||++|++.+.|..+ ..+|.++|||++|+|+++|++|++|++|
T Consensus         1 MkAvv~~~~g~-l~v~e~p~P~~~~~~eVlVkv~a~gi~~sD~~~~~g~~~-~~~P~i~G~E~~G~V~~vG~~V~~~~~G   78 (346)
T 4a2c_A            1 MKSVVNDTDGI-VRVAESVIPEIKHQDEVRVKIASSGLCGSDLPRIFKNGA-HYYPITLGHEFSGYIDAVGSGVDDLHPG   78 (346)
T ss_dssp             CEEEEECSSSC-EEEEECCCCCCCSTTEEEEEEEEEECCTTHHHHHHSSCS-SSSSBCCCCEEEEEEEEECTTCCSCCTT
T ss_pred             CCEEEEecCCC-EEEEEEeCCCCCCcCEEEEEEEEEEECHHHHHHHcCCCC-CCCCccccEEEEEEEEEECCCcccccCC
Confidence            89999999997 9999999998 5799999999999999999999988754 4689999999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |+|++.+...|+.|.+|..|++++|.+...   +|...+|                   +|+||+++|+++++++|++++
T Consensus        79 drV~~~~~~~~g~c~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~l~  136 (346)
T 4a2c_A           79 DAVACVPLLPCFTCPECLKGFYSQCAKYDF---IGSRRDG-------------------GFAEYIVVKRKNVFALPTDMP  136 (346)
T ss_dssp             CEEEECCEECCSCSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEEEGGGEEECCTTSC
T ss_pred             CeEEeeeccCCCCcccccCCccccCCCccc---ccCCCCc-------------------ccccccccchheEEECCCCCC
Confidence            999999999999999999999999998775   6666666                   999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      +++||+++ .+.++++ +....++++|++|||+|+|++|++++|+|+++|+..+++++++++|+++++++|+++++|+++
T Consensus       137 ~~~aa~l~-~~~~~~~-~~~~~~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~  214 (346)
T 4a2c_A          137 IEDGAFIE-PITVGLH-AFHLAQGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSE  214 (346)
T ss_dssp             GGGGGGHH-HHHHHHH-HHHHTTCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHhch-HHHHHHH-HHHHhccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCC
Confidence            99999876 4555555 678889999999999999999999999999999978889999999999999999999999988


Q ss_pred             CCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCc-cccCHHHHHhcCcEEEEeeecC
Q 016507          256 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ-LSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                         .++.+.+++++++ ++|+|||++|.+..++.++++++++ |+++.+|....+.. ...+...++.+++++.|++...
T Consensus       215 ---~~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~  290 (346)
T 4a2c_A          215 ---MSAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPH-AQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNY  290 (346)
T ss_dssp             ---SCHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTT-CEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTC
T ss_pred             ---CCHHHHHHhhcccCCcccccccccccchhhhhhheecCC-eEEEEEeccCCCccccccCHHHHhhceeEEEEEeccc
Confidence               7788888888877 9999999999998899999999997 99999998654332 2345556778999999987543


Q ss_pred             CC--ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          334 LK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       334 ~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..  ..++++++++++++|++++.++++++|||+++++|++.+++++. +|+||.+
T Consensus       291 ~~~~~~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~~~A~~~l~~~~~~GKvVl~P  346 (346)
T 4a2c_A          291 SSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNAMPGKVLLIP  346 (346)
T ss_dssp             CSSTTCHHHHHHHHHHHTTCSCCGGGEEEEECHHHHHHHHHHHTTSCCCSEEEECC
T ss_pred             cCcchHHHHHHHHHHHHcCCCCCCccEeEEEeHHHHHHHHHHHHcCCCceEEEEEC
Confidence            22  24578999999999999999999999999999999999988765 5999864

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=100.00  E-value=2.6e-60  Score=450.02  Aligned_cols=341  Identities=25%  Similarity=0.403  Sum_probs=291.1

Q ss_pred             CcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCccccccccc-CCC--CCCCCcccccceeEEEEEecCCCC
Q 016507           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM-KDF--PAVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g-~~~--~~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      +++|||+++.+++.+++++++|.|+|+++||||||.+++||++|++.+.| .++  ...+|.++|||++|+|+++|++|+
T Consensus         2 m~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   81 (348)
T 2d8a_A            2 SEKMVAIMKTKPGYGAELVEVDVPKPGPGEVLIKVLATSICGTDLHIYEWNEWAQSRIKPPQIMGHEVAGEVVEIGPGVE   81 (348)
T ss_dssp             -CEEEEEEECSSSSSCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCTTHHHHCCSSEECCCEEEEEEEEECTTCC
T ss_pred             CCcceEEEEECCCCCEEEEECCCCCCCcCEEEEEEeEEEecHHHHHHHcCCCCCcccCCCCCccCccceEEEEEECCCCC
Confidence            45699999999984599999999999999999999999999999999998 432  246799999999999999999999


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEc
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l  170 (388)
                      +|++||||++.+..+|+.|.+|++|++++|.+...   +|...+|                   +|+||+++|+++++++
T Consensus        82 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~i  139 (348)
T 2d8a_A           82 GIEVGDYVSVETHIVCGKCYACRRGQYHVCQNTKI---FGVDTDG-------------------VFAEYAVVPAQNIWKN  139 (348)
T ss_dssp             SCCTTCEEEECCEECCSCCC------------CEE---TTTSSCC-------------------SSBSEEEEEGGGEEEC
T ss_pred             cCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCe---ecCCCCC-------------------cCcceEEeChHHeEEC
Confidence            99999999999999999999999999999987654   4544445                   9999999999999999


Q ss_pred             CCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       171 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      |+++++++||+++ ++.|||+++ +.+++ +|++|||+|+|++|++++|+|+.+|+.+|+++++++++.++++++|++++
T Consensus       140 P~~~~~~~aa~~~-~~~ta~~~l-~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~  216 (348)
T 2d8a_A          140 PKSIPPEYATLQE-PLGNAVDTV-LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYV  216 (348)
T ss_dssp             CTTSCHHHHTTHH-HHHHHHHHH-TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEE
T ss_pred             CCCCCHHHHHhhh-HHHHHHHHH-HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE
Confidence            9999999999886 888999987 67889 99999999999999999999999998789999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCH-HHHHhcCcEEEE
Q 016507          251 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSGKILMG  328 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~i~g  328 (388)
                      +|+++   +++.+.+++++++ ++|+|||++|....++.++++++++ |+++.+|...  ....++. ..++.+++++.|
T Consensus       217 ~~~~~---~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~~~i~g  290 (348)
T 2d8a_A          217 INPFE---EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPA-GRVSLLGLYP--GKVTIDFNNLIIFKALTIYG  290 (348)
T ss_dssp             ECTTT---SCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCS--SCCCCCHHHHTTTTTCEEEE
T ss_pred             ECCCC---cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEccCC--CCcccCchHHHHhCCcEEEE
Confidence            99887   7888999998887 8999999999977789999999997 9999999753  2456777 677788999999


Q ss_pred             eeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEe-cchHHHHHHHHhcCceeEEEEeeC
Q 016507          329 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGKCLRCVIWMG  387 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-l~~~~~A~~~~~~~~~~kvvv~~~  387 (388)
                      ++...  ..++++++++++++|++++.++++++|| |+++++|++.++++..+|+||+++
T Consensus       291 ~~~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~gKvvi~~~  348 (348)
T 2d8a_A          291 ITGRH--LWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYEEAFELMRAGKTGKVVFMLK  348 (348)
T ss_dssp             CCCCC--SHHHHHHHHHHHHHTCCCCTTTEEEEEESSTTHHHHHHHHHTTCCSEEEEEC-
T ss_pred             ecCCC--cHHHHHHHHHHHHcCCCChHHhheeeCCCHHHHHHHHHHHhCCCceEEEEeeC
Confidence            85432  1467899999999999888899999999 999999999998755679999874

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=2.4e-60  Score=451.85  Aligned_cols=346  Identities=25%  Similarity=0.394  Sum_probs=294.8

Q ss_pred             CCCCCCCCCCCCCCcceeeeeecCCCCCeEEEEeecCC-CCCCeEEEEEceeccCcccccccccCCC---CCCCCccccc
Q 016507            1 MDIEKPSNKTAGKPIQCRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGH   76 (388)
Q Consensus         1 ~~~~~~~~~~~~~~~~~ka~~~~~~~~~~~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~v~G~   76 (388)
                      |-|+|+-..+ ..+++|||+++.+++.+++++++|.|+ |+++||||||.+++||++|++.+.|.++   ...+|.++||
T Consensus         1 ~~~~~~~~~~-~~~~~mka~~~~~~g~~l~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~   79 (359)
T 1h2b_A            1 MRIEQDFSQS-LGVERLKAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGH   79 (359)
T ss_dssp             -----------------CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCC
T ss_pred             Cchhhhhhhc-CChhhceEEEEecCCCCcEEEEccCCCCCCCCEEEEEEEEEEecccchHHHhCCCccccCCCCCeecCc
Confidence            5566766543 246789999999998679999999999 9999999999999999999999998764   3467999999


Q ss_pred             ceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccce
Q 016507           77 EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF  156 (388)
Q Consensus        77 e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  156 (388)
                      |++|+|+++|++|++|++||||+..+..+|+.|.+|++|++++|.+...   .|+..+|                   +|
T Consensus        80 E~~G~V~~vG~~v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~  137 (359)
T 1h2b_A           80 ENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GF  137 (359)
T ss_dssp             CEEEEEEEECTTCCSCCTTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SS
T ss_pred             CceEEEEEECCCCCCCCCCCEEEeCCCCCCCCChhhhCcCcccCCCccc---cccCCCC-------------------cc
Confidence            9999999999999999999999998889999999999999999987654   4554445                   99


Q ss_pred             eeeEEeecCceEEcCCCCCccccc---cccchhhhhHHHHHHh-cCCCCCCEEEEEccchhHHHHHHHHHHc-CCcEEEE
Q 016507          157 SEYTVLDIAHVVKVDPTVPPNRAC---LLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIG  231 (388)
Q Consensus       157 a~~~~~~~~~~~~lP~~~~~~~aa---~~~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~vG~~ai~la~~~-g~~~Vi~  231 (388)
                      +||+++|.++++++|+++++++||   .+++++.|||+++.+. +++++|++|||+|+|++|++++|+|+.+ |+ +|++
T Consensus       138 aey~~v~~~~~~~iP~~~~~~~aa~~~~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga-~Vi~  216 (359)
T 1h2b_A          138 AEFMRTSHRSVIKLPKDISREKLVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPA-TVIA  216 (359)
T ss_dssp             BSEEEECGGGEEECCTTCCHHHHHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCC-EEEE
T ss_pred             cceEEechHhEEECCCCCCHHHHhhccchhhhHHHHHHHHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC-eEEE
Confidence            999999999999999999999999   7888999999987655 8999999999999999999999999999 99 8999


Q ss_pred             EcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHH--HHHHHHHHhhcCCceEEEEccCCC
Q 016507          232 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLAS--LVQEAYACCRKGWGKTIVLGVDQP  308 (388)
Q Consensus       232 ~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~  308 (388)
                      ++++++++++++++|+++++|+++   . +.+.+++++++ ++|+|||++|++.  .+..++++  ++ |+++.+|....
T Consensus       217 ~~~~~~~~~~~~~lGa~~vi~~~~---~-~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~-G~~v~~g~~~~  289 (359)
T 1h2b_A          217 LDVKEEKLKLAERLGADHVVDARR---D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RM-GRLIIVGYGGE  289 (359)
T ss_dssp             EESSHHHHHHHHHTTCSEEEETTS---C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EE-EEEEECCCSSC
T ss_pred             EeCCHHHHHHHHHhCCCEEEeccc---h-HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CC-CEEEEEeCCCC
Confidence            999999999999999999999887   6 88889898888 8999999999985  68888887  76 99999997542


Q ss_pred             CCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          309 GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       309 ~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                        . .++...++.+++++.|++...   .++++++++++++|++.+  .+ ++|||+++++|++.+.++.. +|+||++
T Consensus       290 --~-~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvvv~~  359 (359)
T 1h2b_A          290 --L-RFPTIRVISSEVSFEGSLVGN---YVELHELVTLALQGKVRV--EV-DIHKLDEINDVLERLEKGEVLGRAVLIP  359 (359)
T ss_dssp             --C-CCCHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSCCC--CE-EEEEGGGHHHHHHHHHTTCCSSEEEEEC
T ss_pred             --C-CCCHHHHHhCCcEEEEecCCC---HHHHHHHHHHHHcCCCcc--eE-EEEeHHHHHHHHHHHHcCCCceEEEeeC
Confidence              2 677777888999999986432   467999999999997654  47 99999999999999988775 6999874

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=100.00  E-value=6.1e-60  Score=446.20  Aligned_cols=336  Identities=27%  Similarity=0.406  Sum_probs=303.6

Q ss_pred             ceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCCC
Q 016507           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        16 ~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      +|||+++++++++++++++|.|+|+++||||||.+++||++|++.++|.++. ..+|.++|||++|+|+++|++|++|++
T Consensus         2 ~MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~G~E~~G~V~~vG~~v~~~~v   81 (340)
T 3s2e_A            2 MMKAAVVRAFGAPLTIDEVPVPQPGPGQVQVKIEASGVCHTDLHAADGDWPVKPTLPFIPGHEGVGYVSAVGSGVSRVKE   81 (340)
T ss_dssp             EEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECSSCCSCCT
T ss_pred             ceEEEEEecCCCCCEEEEccCCCCCCCeEEEEEEEeccCHHHHHHHcCCCCCCCCCCcccCCcceEEEEEECCCCCcCCC
Confidence            4999999999888999999999999999999999999999999999998764 568999999999999999999999999


Q ss_pred             CCEE-eecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           95 GDVV-IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        95 Gd~V-~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      |||| +.++...|+.|.+|++|++++|.+...   .|+..+|                   +|+||+++++++++++|++
T Consensus        82 GdrV~~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  139 (340)
T 3s2e_A           82 GDRVGVPWLYSACGYCEHCLQGWETLCEKQQN---TGYSVNG-------------------GYGEYVVADPNYVGLLPDK  139 (340)
T ss_dssp             TCEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEECCTT
T ss_pred             CCEEEecCCCCCCCCChHHhCcCcccCccccc---cCCCCCC-------------------cceeEEEechHHEEECCCC
Confidence            9999 456778999999999999999998765   5555555                   9999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++++||++++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.++++++|+++++|+
T Consensus       140 ~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~i~~  217 (340)
T 3s2e_A          140 VGFVEIAPILCAGVTVYKGL-KVTDTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGAEVAVNA  217 (340)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HTTTCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHhhcccchhHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence            99999999999999999977 67899999999999999999999999999999 99999999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      ++   .++.+.+++ +.+++|+|||++|+...++.++++++++ |+++.+|...  ....++...++.+++++.|++...
T Consensus       218 ~~---~~~~~~~~~-~~g~~d~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~~  290 (340)
T 3s2e_A          218 RD---TDPAAWLQK-EIGGAHGVLVTAVSPKAFSQAIGMVRRG-GTIALNGLPP--GDFGTPIFDVVLKGITIRGSIVGT  290 (340)
T ss_dssp             TT---SCHHHHHHH-HHSSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCS--SEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             CC---cCHHHHHHH-hCCCCCEEEEeCCCHHHHHHHHHHhccC-CEEEEeCCCC--CCCCCCHHHHHhCCeEEEEEecCC
Confidence            88   788888888 4459999999999988899999999997 9999999754  456777788888999999986543


Q ss_pred             CCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeCC
Q 016507          334 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                         .++++++++++++|++++.   .++|||+++++|++.+++++. +|+||++++
T Consensus       291 ---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~Gkvvv~~~~  340 (340)
T 3s2e_A          291 ---RSDLQESLDFAAHGDVKAT---VSTAKLDDVNDVFGRLREGKVEGRVVLDFSR  340 (340)
T ss_dssp             ---HHHHHHHHHHHHTTSCCCC---EEEECGGGHHHHHHHHHTTCCCSEEEEECCC
T ss_pred             ---HHHHHHHHHHHHhCCCCce---EEEEeHHHHHHHHHHHHcCCCceEEEEecCC
Confidence               4689999999999987653   478899999999999998875 599999875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=100.00  E-value=1.2e-59  Score=446.62  Aligned_cols=341  Identities=22%  Similarity=0.358  Sum_probs=299.7

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCC-C--CCCCCcccccceeEEEEEecCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-F--PAVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~--~~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      |+|||+++.+++. ++++++|.|+|+++||||||.+++||++|++.+.|.. .  ...+|.++|||++|+|+++|++|++
T Consensus         6 ~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~V~~   84 (356)
T 1pl8_A            6 PNNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKH   84 (356)
T ss_dssp             CCCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCS
T ss_pred             cCceEEEEecCCc-EEEEEccCCCCCCCeEEEEEEEeeeCHHHHHHHcCCCCCCccCCCCcccccceEEEEEEECCCCCC
Confidence            6799999999875 9999999999999999999999999999999887532 1  1357999999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeecCceEEc
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l  170 (388)
                      |++||||++.+..+|+.|.+|++|++++|.+..+   .|.. .+                   |+|+||+.+|.++++++
T Consensus        85 ~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-------------------G~~aey~~v~~~~~~~i  142 (356)
T 1pl8_A           85 LKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD-------------------GNLCRFYKHNAAFCYKL  142 (356)
T ss_dssp             CCTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEEC
T ss_pred             CCCCCEEEEeccCCCCCChHHHCcCcccCCCccc---cCcCCCC-------------------CccccEEEeehHHEEEC
Confidence            9999999999999999999999999999987654   3432 23                   49999999999999999


Q ss_pred             CCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       171 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      |+++++++||.+. ++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++++++++++|++++
T Consensus       143 P~~l~~~~aa~~~-~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~v  220 (356)
T 1pl8_A          143 PDNVTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLV  220 (356)
T ss_dssp             CTTSCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEE
T ss_pred             cCCCCHHHHHhhc-hHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEE
Confidence            9999999998764 889999977 77899999999999999999999999999999889999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      +|++..+..++.+.+++.+++++|+|||++|....+..++++++++ |+++.+|...  ....+++..++.+++++.|++
T Consensus       221 i~~~~~~~~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~i~g~~  297 (356)
T 1pl8_A          221 LQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS--EMTTVPLLHAAIREVDIKGVF  297 (356)
T ss_dssp             EECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC--SCCCCCHHHHHHTTCEEEECC
T ss_pred             EcCcccccchHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEecCC--CCCccCHHHHHhcceEEEEec
Confidence            9987100156777888877668999999999987789999999997 9999999732  345678788888999999985


Q ss_pred             ecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEeeC
Q 016507          331 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  387 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~~  387 (388)
                      ..    .++++++++++++|++.+.++++++|||+++++|++.++++..+|+||+++
T Consensus       298 ~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~~  350 (356)
T 1pl8_A          298 RY----CNTWPVAISMLASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCD  350 (356)
T ss_dssp             SC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEECC
T ss_pred             cc----HHHHHHHHHHHHcCCCChHHheEEEecHHHHHHHHHHHhCCCceEEEEeCC
Confidence            32    467999999999999988889999999999999999998885569999875

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=100.00  E-value=1.1e-59  Score=448.29  Aligned_cols=343  Identities=23%  Similarity=0.331  Sum_probs=301.0

Q ss_pred             CCCcceeeeeecCCCCCeEEEEeecC--------CCCCCeEEEEEceeccCcccccccccCC---CCCCCCcccccceeE
Q 016507           12 GKPIQCRAAIATAPGEPLVIDEVIVD--------PPNSHEVRVRIICTSLCHSDVTFWKMKD---FPAVFPRILGHEAIG   80 (388)
Q Consensus        12 ~~~~~~ka~~~~~~~~~~~~~~~~~p--------~~~~~eVlVkv~~~~i~~~D~~~~~g~~---~~~~~p~v~G~e~~G   80 (388)
                      +++++|||+++.+++. ++++++|.|        +|+++||||||.+++||++|++++++..   ...++|.++|||++|
T Consensus         4 ~~~~~mka~~~~~~~~-l~~~~~~~P~~~~~~~~~~~~~eVlVkv~a~gi~~~D~~~~~~~~~~~~~~~~p~v~G~E~~G   82 (363)
T 3m6i_A            4 SASKTNIGVFTNPQHD-LWISEASPSLESVQKGEELKEGEVTVAVRSTGICGSDVHFWKHGCIGPMIVECDHVLGHESAG   82 (363)
T ss_dssp             -CCSCCEEEEECTTCC-EEEEECSSCHHHHHHTCSCCTTEEEEEEEEEECCHHHHHHHHHSBSSSCBCCSCEECCCEEEE
T ss_pred             CCcccceeEEEeCCCc-EEEEEecCCccccccCCCcCCCeEEEEEeEEeecHhhHHHHcCCCCCCccCCCCcccCcceEE
Confidence            3678899999999877 999999999        9999999999999999999999887432   124679999999999


Q ss_pred             EEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeee
Q 016507           81 VVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEY  159 (388)
Q Consensus        81 ~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~  159 (388)
                      +|+++|++|++|++||||++.+..+|+.|.+|++|+++.|.+..+   .|.. .+                   |+|+||
T Consensus        83 ~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~---~g~~~~~-------------------G~~aey  140 (363)
T 3m6i_A           83 EVIAVHPSVKSIKVGDRVAIEPQVICNACEPCLTGRYNGCERVDF---LSTPPVP-------------------GLLRRY  140 (363)
T ss_dssp             EEEEECTTCCSCCTTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTSTTSC-------------------CSCBSE
T ss_pred             EEEEECCCCCCCCCCCEEEEecccCCCCCHHHHCcCcccCCCccc---cCCCCCC-------------------ccceeE
Confidence            999999999999999999999999999999999999999998765   3332 33                   499999


Q ss_pred             EEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          160 TVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       160 ~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      +.+|.++++++|+ +++++||++. ++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+++|++++++++++
T Consensus       141 ~~v~~~~~~~iP~-~s~~~aa~~~-~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~  217 (363)
T 3m6i_A          141 VNHPAVWCHKIGN-MSYENGAMLE-PLSVALAGL-QRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRL  217 (363)
T ss_dssp             EEEEGGGEEECTT-CCHHHHHHHH-HHHHHHHHH-HHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHH
T ss_pred             EEEehhhEEECCC-CCHHHHHhhh-HHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence            9999999999999 9999999885 889999987 788999999999999999999999999999995599999999999


Q ss_pred             HHHHHcCCcEEEcCC--CCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCH
Q 016507          240 EIGKRFGVTEFVNSK--NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS  316 (388)
Q Consensus       240 ~~~~~lga~~v~~~~--~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~  316 (388)
                      ++++++ +++++++.  ..+.+++.+.+++.+++ ++|+||||+|++..+..++++++++ |+++.+|...  ....++.
T Consensus       218 ~~a~~l-~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~  293 (363)
T 3m6i_A          218 KFAKEI-CPEVVTHKVERLSAEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFG-GKVFVIGVGK--NEIQIPF  293 (363)
T ss_dssp             HHHHHH-CTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECCCCC--SCCCCCH
T ss_pred             HHHHHh-chhcccccccccchHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCC-CEEEEEccCC--CCccccH
Confidence            999999 76665543  11126788899999987 9999999999997799999999997 9999999743  3456788


Q ss_pred             HHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcC-c-eeEEEEeeCC
Q 016507          317 FEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG-K-CLRCVIWMGE  388 (388)
Q Consensus       317 ~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~-~-~~kvvv~~~~  388 (388)
                      ..++.+++++.|++..    .++++++++++++|++.+.++++++|||+++++|++.+.++ . .+|+||+.+|
T Consensus       294 ~~~~~~~~~i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  363 (363)
T 3m6i_A          294 MRASVREVDLQFQYRY----CNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQSLE  363 (363)
T ss_dssp             HHHHHHTCEEEECCSC----SSCHHHHHHHHHTTSSCCGGGEEEEEEGGGHHHHHHHHHCGGGCCSEEEEECC-
T ss_pred             HHHHhcCcEEEEccCC----HHHHHHHHHHHHhCCCChHHceeeeeeHHHHHHHHHHHhccCCCeEEEEEecCC
Confidence            8888899999998643    57899999999999999999999999999999999999986 3 3599999865

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.8e-59  Score=442.05  Aligned_cols=340  Identities=24%  Similarity=0.386  Sum_probs=297.4

Q ss_pred             CcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCccccccccc-CCC--CCCCCcccccceeEEEEEecCCCC
Q 016507           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKM-KDF--PAVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g-~~~--~~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      .++|||+++.+++. ++++++|.|+|+++||||||.+++||++|++.+.+ ...  ...+|.++|||++|+|+++|++|+
T Consensus         2 ~~~mka~~~~~~~~-l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~~~~~~~p~v~G~E~~G~V~~vG~~v~   80 (352)
T 1e3j_A            2 ASDNLSAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVK   80 (352)
T ss_dssp             --CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCC
T ss_pred             cccCEEEEEEcCCc-EEEEEecCCCCCCCeEEEEEEEEEEChhhHHHHcCCCCccccCCCCccccccceEEEEEeCCCCC
Confidence            46799999999875 99999999999999999999999999999998874 322  135799999999999999999999


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      +|++||||++.+...|+.|.+|++|++++|.+..+   .|.. .+                   |+|+||+.++.+++++
T Consensus        81 ~~~vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~~-------------------G~~aey~~v~~~~~~~  138 (352)
T 1e3j_A           81 HLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTF---CATPPDD-------------------GNLARYYVHAADFCHK  138 (352)
T ss_dssp             SCCTTCEEEECCEECCSSSHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEcCcCCCCCChhhhCcCcccCCCCcc---cCcCCCC-------------------ccceeEEEeChHHeEE
Confidence            99999999999999999999999999999987654   3332 23                   4999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +|+++++++||++. ++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.++++++|+++
T Consensus       139 iP~~~~~~~aa~~~-~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  215 (352)
T 1e3j_A          139 LPDNVSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADV  215 (352)
T ss_dssp             CCTTSCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSE
T ss_pred             CcCCCCHHHHHhhc-hHHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCCCE
Confidence            99999999999774 888999987 78899999999999999999999999999999 6999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcC---C-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcE
Q 016507          250 FVNSKNCGDKSVSQIIIDMTD---G-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKI  325 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~---g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  325 (388)
                      ++|+++  ..++.+.+++.++   + ++|+|||++|....++.++++++++ |+++.+|...  ....+++..++.++++
T Consensus       216 ~~~~~~--~~~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~~~~~  290 (352)
T 1e3j_A          216 TLVVDP--AKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS--QMVTVPLVNACAREID  290 (352)
T ss_dssp             EEECCT--TTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS--SCCCCCHHHHHTTTCE
T ss_pred             EEcCcc--cccHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--CCccccHHHHHhcCcE
Confidence            999762  1456677777775   4 8999999999987789999999997 9999999733  3456777788889999


Q ss_pred             EEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc--eeEEEEeeCC
Q 016507          326 LMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK--CLRCVIWMGE  388 (388)
Q Consensus       326 i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~--~~kvvv~~~~  388 (388)
                      +.|++..    .++++++++++++|++.+.++++++|||+++++|++.+.+++  .+|+||++++
T Consensus       291 i~g~~~~----~~~~~~~~~l~~~g~i~~~~~i~~~~~l~~~~~A~~~~~~~~~~~~Kvvi~~~~  351 (352)
T 1e3j_A          291 IKSVFRY----CNDYPIALEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQ  351 (352)
T ss_dssp             EEECCSC----SSCHHHHHHHHHTTSCCCGGGEEEEEEGGGHHHHHHHHHHCCTTCSEEEEECCC
T ss_pred             EEEeccc----hHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCCCceEEEEecCC
Confidence            9988532    467999999999999888889999999999999999998875  5699998864

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=100.00  E-value=1.4e-59  Score=445.77  Aligned_cols=343  Identities=24%  Similarity=0.323  Sum_probs=300.3

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCccccc-ccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVT-FWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~-~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++.++++ ++++++|.|+|+++||||||.+++||++|++ ++.|.++ .++|.++|||++|+|+++|++|++|++|
T Consensus         1 MkA~~~~~~~~-~~~~e~~~P~~~~~eVlVkv~a~gi~~~D~~~~~~g~~~-~~~p~v~G~E~~G~V~~vG~~v~~~~vG   78 (352)
T 3fpc_A            1 MKGFAMLSIGK-VGWIEKEKPAPGPFDAIVRPLAVAPCTSDIHTVFEGAIG-ERHNMILGHEAVGEVVEVGSEVKDFKPG   78 (352)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTC-CCSSEECCCEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEccCCC-ceEEeCCCCCCCCCeEEEEeCEEeEcccchHHHhCCCCC-CCCCcccCCcceEEEEEECCCCCcCCCC
Confidence            89999999998 8999999999999999999999999999999 5577765 3679999999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC--ceEEcCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPT  173 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~--~~~~lP~~  173 (388)
                      |||++.+..+|+.|.+|+.|+.+.|........+|...+                   |+|+||+.++..  +++++|++
T Consensus        79 drV~~~~~~~c~~c~~c~~g~~~~~~~~~~~~~~~~~~~-------------------G~~aey~~v~~~~~~~~~iP~~  139 (352)
T 3fpc_A           79 DRVVVPAITPDWRTSEVQRGYHQHSGGMLAGWKFSNVKD-------------------GVFGEFFHVNDADMNLAHLPKE  139 (352)
T ss_dssp             CEEEECSBCCCSSSHHHHTTCGGGTTSTTTTBCBTTTBC-------------------CSSBSCEEESSHHHHCEECCTT
T ss_pred             CEEEEccccCCCCchhhcCCCcCCccccccccccccCCC-------------------CcccceEEeccccCeEEECCCC
Confidence            999999999999999999999999975442211232333                   499999999976  89999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++++||++++++.|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|++++++++|+++++++|+++++|+
T Consensus       140 ~~~~~aa~~~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~  218 (352)
T 3fpc_A          140 IPLEAAVMIPDMMTTGFHGA-ELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINY  218 (352)
T ss_dssp             SCHHHHTTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECG
T ss_pred             CCHHHHhhccchhHHHHHHH-HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcC
Confidence            99999999999999999976 78899999999999999999999999999999789999999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH--HHhcCcEEEEee
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE--VLHSGKILMGSL  330 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~--~~~~~~~i~g~~  330 (388)
                      ++   .++.+.+++.+++ ++|+||||+|++..++.++++++++ |+++.+|.......++++...  +..+++++.++.
T Consensus       219 ~~---~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~  294 (352)
T 3fpc_A          219 KN---GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPG-SDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGL  294 (352)
T ss_dssp             GG---SCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBC
T ss_pred             CC---cCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEecccCCCCceecchhHhhhhccccEEEEee
Confidence            87   7899999999988 8999999999976699999999997 999999976544444444332  235688888875


Q ss_pred             ecCCCccCcHHHHHHHHhCCCCCCCcceeeeEe-cchHHHHHHHHhcCc-e-eEEEEeeC
Q 016507          331 FGGLKAKSDIPILLKRYMDKELELDKFVTHEMK-FEEINSAFDLLIKGK-C-LRCVIWMG  387 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-l~~~~~A~~~~~~~~-~-~kvvv~~~  387 (388)
                      ...  ..++++++++++++|++++.++++++|+ |+++++|++.++++. . +|+||+++
T Consensus       295 ~~~--~~~~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~~~A~~~~~~~~~~~~Kvvi~~~  352 (352)
T 3fpc_A          295 CPG--GRLRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVVILA  352 (352)
T ss_dssp             CCC--HHHHHHHHHHHHHTTSCCGGGGEEEEEESTTHHHHHHHHHHSCCTTCSEEEEECC
T ss_pred             ccC--chhHHHHHHHHHHcCCCChhHhheeeCCCHHHHHHHHHHHHhCCCCcEEEEEEeC
Confidence            322  2457999999999999999999999999 999999999998854 3 59999874

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=100.00  E-value=1.5e-59  Score=444.03  Aligned_cols=338  Identities=24%  Similarity=0.370  Sum_probs=301.8

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC---CCCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++   ...+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2dq4_A            1 MRALAKLAPEEGLTLVDRPVPEPGPGEILVRVEAASICGTDLHIWKWDAWARGRIRPPLVTGHEFSGVVEAVGPGVRRPQ   80 (343)
T ss_dssp             CEEEEECSSSSSCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTCHHHHHHCCSSEECCCEEEEEEEEECTTCCSSC
T ss_pred             CeEEEEeCCCCcEEEEeccCCCCCCCEEEEEEEEEeechhhHHHHcCCCCccccCCCCCcCCccceEEEEEECCCCCcCC
Confidence            79999999987799999999999999999999999999999999998654   246799999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||||++.+..+|+.|.+|++|++++|.+...   +|...+|                   +|+||++++.++++++|++
T Consensus        81 vGdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (343)
T 2dq4_A           81 VGDHVSLESHIVCHACPACRTGNYHVCLNTQI---LGVDRDG-------------------GFAEYVVVPAENAWVNPKD  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGEEEECTT
T ss_pred             CCCEEEECCCCCCCCChhhhCcCcccCCCcce---ecCCCCC-------------------cceeEEEEchHHeEECCCC
Confidence            99999999999999999999999999987654   4444444                   9999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++++||++. ++.|||+++.+.+++ +|++|||+|+|++|++++|+|+.+|+.+|+++++++++.++++++ +++++|+
T Consensus       139 ~~~~~aa~~~-~~~ta~~~l~~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~~v~~~  215 (343)
T 2dq4_A          139 LPFEVAAILE-PFGNAVHTVYAGSGV-SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-ADRLVNP  215 (343)
T ss_dssp             SCHHHHTTHH-HHHHHHHHHHSTTCC-TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CSEEECT
T ss_pred             CCHHHHHhhh-HHHHHHHHHHHhCCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HHhccCc
Confidence            9999999885 788999987547889 999999999999999999999999987899999999999999999 9999998


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCH-HHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~~~i~g~~~~  332 (388)
                      ++   +++.+.+++.+++++|+|||++|....++.++++++++ |+++.+|...  ....++. ..++.+++++.|++..
T Consensus       216 ~~---~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~~~i~g~~~~  289 (343)
T 2dq4_A          216 LE---EDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPG-GEARILGIPS--DPIRFDLAGELVMRGITAFGIAGR  289 (343)
T ss_dssp             TT---SCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCS--SCEEECHHHHTGGGTCEEEECCSC
T ss_pred             Cc---cCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCC--CCceeCcHHHHHhCceEEEEeecC
Confidence            87   78888898888339999999999976699999999997 9999999743  3467787 7788899999998543


Q ss_pred             CCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEeeC
Q 016507          333 GLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  387 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~~  387 (388)
                      .  ..++++++++++++|++++.++++++|||+++++|++.+++++.+|+||+++
T Consensus       290 ~--~~~~~~~~~~l~~~g~~~~~~~i~~~~~l~~~~~A~~~~~~~~~gKvv~~~~  342 (343)
T 2dq4_A          290 R--LWQTWMQGTALVYSGRVDLSPLLTHRLPLSRYREAFGLLASGQAVKVILDPK  342 (343)
T ss_dssp             C--TTHHHHHHHHHHHHTSSCCGGGEEEEEEGGGHHHHHHHHHHSSCSEEEEETT
T ss_pred             C--CHHHHHHHHHHHHcCCCChHHheeEEecHHHHHHHHHHHhcCCceEEEEeeC
Confidence            1  2467999999999999888999999999999999999998876689999876

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=100.00  E-value=3.5e-58  Score=433.81  Aligned_cols=335  Identities=27%  Similarity=0.406  Sum_probs=297.1

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++++++.+++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++|++|
T Consensus         1 Mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~GhE~~G~V~~vG~~v~~~~vG   80 (339)
T 1rjw_A            1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (339)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEeEchhhHHHhcCCCCcCCCCCeeccccceEEEEEECCCCCcCCCC
Confidence            799999999866999999999999999999999999999999999987652 4679999999999999999999999999


Q ss_pred             CEEeecCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           96 DVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        96 d~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      |||++.+.. .|+.|.+|++|++++|.+...   .|+..+|                   +|+||+.++.++++++|+++
T Consensus        81 drV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~~P~~~  138 (339)
T 1rjw_A           81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNL  138 (339)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTS
T ss_pred             CEEEEecCCCCCCCCchhhCcCcccCCCcce---eecCCCC-------------------cceeeEEechHHEEECCCCC
Confidence            999987654 599999999999999987654   4444455                   99999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++++||++++++.|||+++.+ .++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.++++++|+++++|++
T Consensus       139 ~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~d~~  216 (339)
T 1rjw_A          139 SFEEAAPIFCAGVTTYKALKV-TGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNPL  216 (339)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHH-HTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECTT
T ss_pred             CHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCCCEEecCC
Confidence            999999999999999998754 489999999999998899999999999999 999999999999999999999999988


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                      +   .++.+.+++.+ +++|+|||++|....++.++++++++ |+++.+|...  ....++...++.+++++.|+.... 
T Consensus       217 ~---~~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~i~g~~~~~-  288 (339)
T 1rjw_A          217 K---EDAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLPP--EEMPIPIFDTVLNGIKIIGSIVGT-  288 (339)
T ss_dssp             T---SCHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCS--SEEEEEHHHHHHTTCEEEECCSCC-
T ss_pred             C---ccHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcC-CEEEEecccC--CCCccCHHHHHhCCcEEEEeccCC-
Confidence            7   67888888877 68999999999977799999999997 9999999753  235677778888999999986432 


Q ss_pred             CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc-eeEEEEeeCC
Q 016507          335 KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-CLRCVIWMGE  388 (388)
Q Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~kvvv~~~~  388 (388)
                        .++++++++++.+|++++.   +++|||+++++|++.+.+++ .+|+||++++
T Consensus       289 --~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  338 (339)
T 1rjw_A          289 --RKDLQEALQFAAEGKVKTI---IEVQPLEKINEVFDRMLKGQINGRVVLTLED  338 (339)
T ss_dssp             --HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             --HHHHHHHHHHHHcCCCCcc---EEEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence              4679999999999987653   47999999999999998876 4699999864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=100.00  E-value=5.4e-59  Score=440.99  Aligned_cols=341  Identities=20%  Similarity=0.309  Sum_probs=290.7

Q ss_pred             CCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCC
Q 016507           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      |+|+|||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|
T Consensus         1 M~m~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~E~~G~V~~vG~~v~~~   80 (348)
T 3two_A            1 MRVQSKGFAIFSKDEHFKPHDFSRHAVGPRDVLIDILYAGICHSDIHSAYSEWKEGIYPMIPGHEIAGIIKEVGKGVKKF   80 (348)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHTTSSSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CceEEEEEEEccCCCCCeEEEeeCCCCCCCeEEEEEEEeeecccchhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCC
Confidence            34889999999998889999999999999999999999999999999999988777889999999999999999999999


Q ss_pred             CCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           93 VEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        93 ~vGd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      ++||||++.+. ..|+.|.+|++|++++|. ...   .|+..+....         ......|+|+||+++|.++++++|
T Consensus        81 ~vGdrV~~~~~~~~Cg~C~~C~~g~~~~c~-~~~---~~~~~~~~~~---------~~~~~~G~~aey~~v~~~~~~~iP  147 (348)
T 3two_A           81 KIGDVVGVGCFVNSCKACKPCKEHQEQFCT-KVV---FTYDCLDSFH---------DNEPHMGGYSNNIVVDENYVISVD  147 (348)
T ss_dssp             CTTCEEEECSEEECCSCSHHHHTTCGGGCT-TCE---ESSSSEEGGG---------TTEECCCSSBSEEEEEGGGCEECC
T ss_pred             CCCCEEEEeCCcCCCCCChhHhCCCcccCc-ccc---cccccccccc---------cCCcCCccccceEEechhhEEECC
Confidence            99999988664 789999999999999998 322   2332220000         001123599999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV  251 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~  251 (388)
                      +++++++||++++++.|||+++ +..++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.++++++|+++++
T Consensus       148 ~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~v~  225 (348)
T 3two_A          148 KNAPLEKVAPLLCAGITTYSPL-KFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMGVKHFY  225 (348)
T ss_dssp             TTSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTTCSEEE
T ss_pred             CCCCHHHhhhhhhhHHHHHHHH-HhcCCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcCCCeec
Confidence            9999999999999999999976 45699999999999999999999999999999 999999999999999999999998


Q ss_pred             cCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccc-cCHHHHH-hcCcEEEEe
Q 016507          252 NSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVL-HSGKILMGS  329 (388)
Q Consensus       252 ~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~-~~~~~i~g~  329 (388)
                       .+.   ..+    .    .++|+||||+|+...+..++++++++ |+++.+|.... .... ++...++ .+++++.|+
T Consensus       226 -~~~---~~~----~----~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~i~g~  291 (348)
T 3two_A          226 -TDP---KQC----K----EELDFIISTIPTHYDLKDYLKLLTYN-GDLALVGLPPV-EVAPVLSVFDFIHLGNRKVYGS  291 (348)
T ss_dssp             -SSG---GGC----C----SCEEEEEECCCSCCCHHHHHTTEEEE-EEEEECCCCCG-GGCCEEEHHHHHHTCSCEEEEC
T ss_pred             -CCH---HHH----h----cCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEECCCCC-CCcccCCHHHHHhhCCeEEEEE
Confidence             322   211    1    18999999999985599999999997 99999997431 2333 6777777 899999998


Q ss_pred             eecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeCC
Q 016507          330 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                      +...   .++++++++++++|++++.  + ++|||+++++|++.+.+++. +|+||++++
T Consensus       292 ~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvVi~~~~  345 (348)
T 3two_A          292 LIGG---IKETQEMVDFSIKHNIYPE--I-DLILGKDIDTAYHNLTHGKAKFRYVIDMKK  345 (348)
T ss_dssp             CSCC---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCCSEEEEEGGG
T ss_pred             ecCC---HHHHHHHHHHHHhCCCCce--E-EEEEHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            7544   3679999999999987663  4 89999999999999998876 599998763

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=100.00  E-value=1.4e-58  Score=437.65  Aligned_cols=337  Identities=25%  Similarity=0.390  Sum_probs=295.2

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC--CCCCcccccceeEEEEEecCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~--~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      |||+++++++++++++++|.|+|+++||||||.+++||++|++.++|.++.  ..+|.++|||++|+|+++|++|++|++
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   80 (345)
T 3jv7_A            1 MKAVQYTEIGSEPVVVDIPTPTPGPGEILLKVTAAGLCHSDIFVMDMPAAQYAYGLPLTLGHEGVGTVAELGEGVTGFGV   80 (345)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEECCHHHHHHHHSCTTTCCSCSSEECCSEEEEEEEEECTTCCSCCT
T ss_pred             CeEEEEcCCCCceEEEEecCCCCCCCeEEEEEEEEeeCHHHHHHHcCCCCccCCCCCcccCcccEEEEEEECCCCCCCCC
Confidence            799999999988999999999999999999999999999999999987542  567999999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCC-CCCCC-CCCCCCCCCCccccccCCceecccccccceeeeEEee-cCceEEcC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCS-AFPFK-ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKVD  171 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~-~~~~~-~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~-~~~~~~lP  171 (388)
                      ||||++.+...|+.|.+|+++++++|. +..+. ...|...+                   |+|+||++++ .+.++++|
T Consensus        81 GdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~~~~~~~~p  141 (345)
T 3jv7_A           81 GDAVAVYGPWGCGACHACARGRENYCTRAADLGITPPGLGSP-------------------GSMAEYMIVDSARHLVPIG  141 (345)
T ss_dssp             TCEEEECCSCCCSSSHHHHTTCGGGCSSHHHHTCCCBTTTBC-------------------CSSBSEEEESCGGGEEECT
T ss_pred             CCEEEEecCCCCCCChHHHCcCcCcCccccccccccCCcCCC-------------------ceeeEEEEecchhceEeCC
Confidence            999999999999999999999999994 22210 00222233                   4999999999 99999999


Q ss_pred             CCCCccccccccchhhhhHHHHHH-hcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      + +++++||+++++++|||+++.+ ..++++|++|||+|+|++|++++|+|+.+|..+|++++++++|+++++++|++++
T Consensus       142 ~-~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~  220 (345)
T 3jv7_A          142 D-LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAA  220 (345)
T ss_dssp             T-CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEE
T ss_pred             C-CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence            9 9999999999999999998766 4489999999999999999999999999944499999999999999999999999


Q ss_pred             EcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          251 VNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      +++++    ++.+.+++++++ ++|+||||+|+...++.++++++++ |+++.+|.... ...+++. .++.+++++.++
T Consensus       221 i~~~~----~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~-~~~~~~~~i~g~  293 (345)
T 3jv7_A          221 VKSGA----GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVD-GHISVVGIHAG-AHAKVGF-FMIPFGASVVTP  293 (345)
T ss_dssp             EECST----THHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECSCCTT-CCEEEST-TTSCTTCEEECC
T ss_pred             EcCCC----cHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCC-CCCCcCH-HHHhCCCEEEEE
Confidence            99754    688889999988 9999999999997799999999997 99999997543 2455664 677889999988


Q ss_pred             eecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          330 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ....   .++++++++++++|++.+   ++++|+|+++++|++.+.+++. +|+||++
T Consensus       294 ~~~~---~~~~~~~~~l~~~g~l~~---~~~~~~l~~~~~A~~~~~~~~~~Gkvvv~p  345 (345)
T 3jv7_A          294 YWGT---RSELMEVVALARAGRLDI---HTETFTLDEGPAAYRRLREGSIRGRGVVVP  345 (345)
T ss_dssp             CSCC---HHHHHHHHHHHHTTCCCC---CEEEECSTTHHHHHHHHHHTCCSSEEEECC
T ss_pred             ecCC---HHHHHHHHHHHHcCCCce---EEEEEcHHHHHHHHHHHHcCCCceeEEeCC
Confidence            6443   468999999999998776   4599999999999999998875 5999864

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.7e-58  Score=442.23  Aligned_cols=349  Identities=25%  Similarity=0.346  Sum_probs=300.4

Q ss_pred             CCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCC--
Q 016507           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD--   90 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~--   90 (388)
                      +..+|||+++.++++.++++++|.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++| +|+  
T Consensus        14 ~~~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~P~v~GhE~~G~V~~vG-~V~~~   92 (380)
T 1vj0_A           14 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVN-GEKRD   92 (380)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEES-SCCBC
T ss_pred             hhhheEEEEEecCCCCeEEEEccCCCCCCCEEEEEEeEEeecccchHHhcCCCCCCCCCcccCcCcEEEEEEeC-Ccccc
Confidence            34679999999998559999999999999999999999999999999999976545689999999999999999 999  


Q ss_pred             ----CCCCCCEEeecCCCCCCCCcccc-CCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEe-ec
Q 016507           91 ----GVVEGDVVIPHFLADCTECVGCR-SKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVL-DI  164 (388)
Q Consensus        91 ----~~~vGd~V~~~~~~~~~~c~~c~-~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~-~~  164 (388)
                          +|++||||++.+..+|+.|.+|+ +|++++|.+...   +|.....        +   .+....|+|+||+++ |+
T Consensus        93 ~~~~~~~vGdrV~~~~~~~cg~C~~C~~~g~~~~C~~~~~---~g~~~~~--------~---~~~~~~G~~aey~~v~~~  158 (380)
T 1vj0_A           93 LNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC--------S---EYPHLRGCYSSHIVLDPE  158 (380)
T ss_dssp             TTSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS--------S---STTCCCSSSBSEEEECTT
T ss_pred             ccCCCCCCCCEEEEcccCCCCCCHHHhcCCCcccCCCcce---ecccccc--------C---CCCCCCccccceEEEccc
Confidence                99999999999999999999999 999999987643   3321000        0   000112599999999 99


Q ss_pred             CceEEcCCCCCcc-ccccccchhhhhHHHHHHhcC-CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHH
Q 016507          165 AHVVKVDPTVPPN-RACLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (388)
Q Consensus       165 ~~~~~lP~~~~~~-~aa~~~~~~~ta~~~l~~~~~-~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~  242 (388)
                      ++++++|++++++ +|++++ +++|||+++ +.++ +++|++|||+|+|++|++++|+|+.+|+.+|+++++++++++++
T Consensus       159 ~~~~~iP~~l~~~~~Aa~~~-~~~ta~~al-~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~  236 (380)
T 1vj0_A          159 TDVLKVSEKDDLDVLAMAMC-SGATAYHAF-DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLA  236 (380)
T ss_dssp             CCEEEECTTSCHHHHHHHTT-HHHHHHHHH-HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHH
T ss_pred             ceEEECCCCCChHHhHhhhc-HHHHHHHHH-HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHH
Confidence            9999999999999 777777 999999987 6688 99999999999999999999999999944999999999999999


Q ss_pred             HHcCCcEEEcCC---CCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH
Q 016507          243 KRFGVTEFVNSK---NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE  318 (388)
Q Consensus       243 ~~lga~~v~~~~---~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~  318 (388)
                      +++|+++++|++   +   .++.+.+++.+++ ++|+||||+|....+..++++++++ |+++.+|.........++...
T Consensus       237 ~~lGa~~vi~~~~~~~---~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~  312 (380)
T 1vj0_A          237 EEIGADLTLNRRETSV---EERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYE  312 (380)
T ss_dssp             HHTTCSEEEETTTSCH---HHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHH
T ss_pred             HHcCCcEEEeccccCc---chHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcC-CEEEEEecCCCCCCeeEchHH
Confidence            999999999987   5   6788899999888 8999999999876699999999997 999999975412246778777


Q ss_pred             -HHhcCcEEEEeeecCCCccCcHHHHHHHHhC--CCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEeeC
Q 016507          319 -VLHSGKILMGSLFGGLKAKSDIPILLKRYMD--KELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMG  387 (388)
Q Consensus       319 -~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~~  387 (388)
                       ++.+++++.|++...   .++++++++++++  |++  .++++++|||+++++|++.++++...|+||+++
T Consensus       313 ~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~Kvvl~~~  379 (380)
T 1vj0_A          313 WLVLKNATFKGIWVSD---TSHFVKTVSITSRNYQLL--SKLITHRLPLKEANKALELMESREALKVILYPE  379 (380)
T ss_dssp             HTTTTTCEEEECCCCC---HHHHHHHHHHHHTCHHHH--GGGCCEEEEGGGHHHHHHHHHHTSCSCEEEECC
T ss_pred             HHHhCCeEEEEeecCC---HHHHHHHHHHHHhhcCCe--eeEEEEEEeHHHHHHHHHHHhcCCCceEEEEeC
Confidence             788999999986542   4679999999999  866  667889999999999999998765349999875

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.1e-57  Score=429.87  Aligned_cols=342  Identities=22%  Similarity=0.350  Sum_probs=299.8

Q ss_pred             CCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCC
Q 016507           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      +|.+|||+++++++.+++++++|.|+|+++||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|++|++
T Consensus         2 ~p~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~   81 (347)
T 2hcy_A            2 IPETQKGVIFYESHGKLEYKDIPVPKPKANELLINVKYSGVCHTDLHAWHGDWPLPVKLPLVGGHEGAGVVVGMGENVKG   81 (347)
T ss_dssp             CCSEEEEEEESSTTCCCEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSEECCCEEEEEEEEECTTCCS
T ss_pred             CCcccEEEEEeCCCCCCEEEEeeCCCCCCCEEEEEEEEEEechhHHHHhcCCCCCCCCCCcccCccceEEEEEECCCCCC
Confidence            5678999999999866999999999999999999999999999999999987652 467999999999999999999999


Q ss_pred             CCCCCEEeecCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEc
Q 016507           92 VVEGDVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (388)
Q Consensus        92 ~~vGd~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l  170 (388)
                      |++||||++.+.. .|+.|.+|++|++++|.+...   .|+..+|                   +|+||+.+|+++++++
T Consensus        82 ~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~i  139 (347)
T 2hcy_A           82 WKIGDYAGIKWLNGSCMACEYCELGNESNCPHADL---SGYTHDG-------------------SFQQYATADAVQAAHI  139 (347)
T ss_dssp             CCTTCEEEECSEEECCSSSTTTTTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEETTTSEEE
T ss_pred             CcCCCEEEEecCCCCCCCChhhhCCCcccCccccc---cccCCCC-------------------cceeEEEeccccEEEC
Confidence            9999999987654 599999999999999987654   4444445                   9999999999999999


Q ss_pred             CCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       171 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      |+++++++||++++++.|||+++. ..++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|+++
T Consensus       140 P~~~~~~~aa~l~~~~~ta~~~l~-~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g~~~  217 (347)
T 2hcy_A          140 PQGTDLAQVAPILCAGITVYKALK-SANLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIGGEV  217 (347)
T ss_dssp             CTTCCHHHHGGGGTHHHHHHHHHH-TTTCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTTCCE
T ss_pred             CCCCCHHHHHHHhhhHHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcCCce
Confidence            999999999999999999999764 458999999999998 9999999999999999 9999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      ++|..+  .+++.+.+++.+.+++|++||++|....++.++++++++ |+++.+|... ....+++...++.+++++.|+
T Consensus       218 ~~d~~~--~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~-~~~~~~~~~~~~~~~~~i~g~  293 (347)
T 2hcy_A          218 FIDFTK--EKDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRAN-GTTVLVGMPA-GAKCCSDVFNQVVKSISIVGS  293 (347)
T ss_dssp             EEETTT--CSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEE-EEEEECCCCT-TCEEEEEHHHHHHTTCEEEEC
T ss_pred             EEecCc--cHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEeCCC-CCCCCCCHHHHhhCCcEEEEc
Confidence            998763  157888888877668999999999977699999999997 9999999753 234567777888899999998


Q ss_pred             eecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc-eeEEEEeeCC
Q 016507          330 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-CLRCVIWMGE  388 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~~kvvv~~~~  388 (388)
                      +...   .++++++++++++|++++.   +++|||+++++|++.+++++ .+|+||++++
T Consensus       294 ~~~~---~~~~~~~~~l~~~g~l~~~---~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  347 (347)
T 2hcy_A          294 YVGN---RADTREALDFFARGLVKSP---IKVVGLSTLPEIYEKMEKGQIVGRYVVDTSK  347 (347)
T ss_dssp             CCCC---HHHHHHHHHHHHTTSCCCC---EEEEEGGGHHHHHHHHHTTCCSSEEEEESCC
T ss_pred             cCCC---HHHHHHHHHHHHhCCCccc---eEEEcHHHHHHHHHHHHcCCcceeEEEecCC
Confidence            6432   4678999999999987653   47999999999999998876 4699998864

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=100.00  E-value=1.1e-57  Score=432.26  Aligned_cols=336  Identities=24%  Similarity=0.340  Sum_probs=299.0

Q ss_pred             eeeeeecCC-CCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAP-GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~-~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++... ...++++++|+|+|+||||||||.|+|||++|+++++|.++. ++|.++|||++|+|+++|++|++|++|
T Consensus         1 MKA~v~~~~~~~~~~l~e~~~P~~~p~eVLVkv~a~gic~~D~~~~~G~~~~-~~p~i~GhE~aG~V~~vG~~V~~~~~G   79 (348)
T 4eez_A            1 MKAAVVRHNPDGYADLVEKELRAIKPNEALLDMEYCGVCHTDLHVAAGDFGN-KAGTVLGHEGIGIVKEIGADVSSLQVG   79 (348)
T ss_dssp             CEEEEECSSCCSSEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHTTTTCC-CTTCBCCSEEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEEcCCCCcEEEEEeECCCCCCCEEEEEEEEEEECHHHHHHhcCCCCC-CCCcccceeEEEEEEEECceeeecccC
Confidence            899988643 344999999999999999999999999999999999998754 679999999999999999999999999


Q ss_pred             CEEeecCCC-CCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           96 DVVIPHFLA-DCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        96 d~V~~~~~~-~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      |||++.+.. .|+.|.+|..+..+.|.....   .+...+|                   +|+||+.+++++++++|+++
T Consensus        80 drV~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~~~~~G-------------------~~ae~~~~~~~~~~~iP~~~  137 (348)
T 4eez_A           80 DRVSVAWFFEGCGHCEYCVSGNETFCREVKN---AGYSVDG-------------------GMAEEAIVVADYAVKVPDGL  137 (348)
T ss_dssp             CEEEEESEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGSCBCCTTS
T ss_pred             CeEeecccccccCccccccCCcccccccccc---cccccCC-------------------cceeeccccccceeecCCCC
Confidence            999887754 578999999999999987765   4555555                   99999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++++||++++++.|||+++ +.+++++|++|||+|+|++|.+++|+++.++..+|++++++++|+++++++|+++++|++
T Consensus       138 ~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~  216 (348)
T 4eez_A          138 DPIEASSITCAGVTTYKAI-KVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSG  216 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-
T ss_pred             CHHHHhhcccceeeEEeee-cccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCC
Confidence            9999999999999999965 678899999999999999999999999977544999999999999999999999999999


Q ss_pred             CCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          255 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      +   .++.+.+++++++ ++|++++++++...+..++++++++ |+++.+|...  ....++...++.+++++.|++.+.
T Consensus       217 ~---~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~-G~~v~~g~~~--~~~~~~~~~~~~~~~~i~gs~~~~  290 (348)
T 4eez_A          217 D---VNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPM-GKMVAVAVPN--TEMTLSVPTVVFDGVEVAGSLVGT  290 (348)
T ss_dssp             C---CCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEE-EEEEECCCCS--CEEEECHHHHHHSCCEEEECCSCC
T ss_pred             C---CCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCC-ceEEEEeccC--CCCccCHHHHHhCCeEEEEEecCC
Confidence            8   8899999999999 9999999999999899999999997 9999999643  456788888999999999987543


Q ss_pred             CCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeCC
Q 016507          334 LKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                         +.+++++++++++|++++  + +++|||+++++|++.+++++. +|+||+|++
T Consensus       291 ---~~~~~~~~~l~~~g~i~p--~-~~~~~l~~~~~A~~~l~~g~~~GKvVl~~sk  340 (348)
T 4eez_A          291 ---RLDLAEAFQFGAEGKVKP--I-VATRKLEEINDIIDEMKAGKIEGRMVIDFTK  340 (348)
T ss_dssp             ---HHHHHHHHHHHHTTSCCC--C-EEEECGGGHHHHHHHHHTTCCSSEEEEECC-
T ss_pred             ---HHHHHHHHHHHHcCCCEE--E-EEEEeHHHHHHHHHHHHCCCCccEEEEEccc
Confidence               467999999999997754  3 489999999999999999875 599998864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-57  Score=430.20  Aligned_cols=336  Identities=25%  Similarity=0.374  Sum_probs=298.6

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+++.+  ++++++|.|+|+++||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|++|++|+
T Consensus         1 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~   80 (343)
T 2eih_A            1 MRAVVMRARGGPEVLEVADLPVPEPGPKEVRVRLKAAALNHLDVWVRKGVASPKLPLPHVLGADGSGVVDAVGPGVEGFA   80 (343)
T ss_dssp             CEEEEECSSSSGGGEEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSSTTCCSSEECCSEEEEEEEEECSSCCSCC
T ss_pred             CeEEEEecCCCCceEEEEecCCCCCCCCEEEEEEEEEEeCHHHHHHhcCCCCCCCCCCcccccceEEEEEEECCCCCCCC
Confidence            799999999875  889999999999999999999999999999999987653 46799999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||||++.+..+|+.|.+|++|++++|.+...   .|+..+|                   +|+||+.+|.++++++|++
T Consensus        81 vGdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~P~~  138 (343)
T 2eih_A           81 PGDEVVINPGLSCGRCERCLAGEDNLCPRYQI---LGEHRHG-------------------TYAEYVVLPEANLAPKPKN  138 (343)
T ss_dssp             TTCEEEECCEECCSCSHHHHTTCGGGCTTCEE---TTTSSCC-------------------SSBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECCCCCcccchhhccCcccccccccc---cCcCCCc-------------------cceeEEEeChHHeEECCCC
Confidence            99999999999999999999999999987764   4554455                   9999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.++++++|+++++|
T Consensus       139 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga~~~~d  217 (343)
T 2eih_A          139 LSFEEAAAIPLTFLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGADETVN  217 (343)
T ss_dssp             SCHHHHHHSHHHHHHHHHHHTTTSCCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHhhchhhHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEc
Confidence            9999999999999999998866678999999999998 9999999999999999 9999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      .++   .++.+.+.+.+++ ++|++||++|.. .++.++++++++ |+++.+|..... ...++...++.+++++.|+..
T Consensus       218 ~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~-G~~v~~g~~~~~-~~~~~~~~~~~~~~~~~g~~~  291 (343)
T 2eih_A          218 YTH---PDWPKEVRRLTGGKGADKVVDHTGAL-YFEGVIKATANG-GRIAIAGASSGY-EGTLPFAHVFYRQLSILGSTM  291 (343)
T ss_dssp             TTS---TTHHHHHHHHTTTTCEEEEEESSCSS-SHHHHHHHEEEE-EEEEESSCCCSC-CCCCCTTHHHHTTCEEEECCS
T ss_pred             CCc---ccHHHHHHHHhCCCCceEEEECCCHH-HHHHHHHhhccC-CEEEEEecCCCC-cCccCHHHHHhCCcEEEEecC
Confidence            877   6788888888876 899999999954 489999999997 999999975432 334666677889999998853


Q ss_pred             cCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          332 GGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      .   ..++++++++++++|++.  ++++++|||+++++|++.+++++. +|+|+++
T Consensus       292 ~---~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  342 (343)
T 2eih_A          292 A---SKSRLFPILRFVEEGKLK--PVVGQVLPLEAAAEGHRLLEERRVFGKVVLQV  342 (343)
T ss_dssp             C---CGGGHHHHHHHHHHTSSC--CCEEEEEEGGGHHHHHHHHHTTCSSSEEEEEC
T ss_pred             c---cHHHHHHHHHHHHcCCCC--CceeEEeeHHHHHHHHHHHHcCCCceEEEEec
Confidence            2   256899999999999764  568999999999999999988764 6999976

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=100.00  E-value=3.5e-57  Score=430.78  Aligned_cols=336  Identities=22%  Similarity=0.230  Sum_probs=294.1

Q ss_pred             CCcceeeeeecCCC-CCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC-CCCCCcccccceeEEEEEecCCCC
Q 016507           13 KPIQCRAAIATAPG-EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF-PAVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        13 ~~~~~ka~~~~~~~-~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~-~~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      +|.+|||+++.+++ +.++++++|.|+|++|||||||.+++||++|++++.|.++ ...+|.++|||++|+|+++|++|+
T Consensus        24 m~~~mkA~~~~~~~~~~l~~~e~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~v~GhE~~G~V~~vG~~v~  103 (363)
T 3uog_A           24 MSKWMQEWSTETVAPHDLKLAERPVPEAGEHDIIVRTLAVSLNYRDKLVLETGMGLDLAFPFVPASDMSGVVEAVGKSVT  103 (363)
T ss_dssp             CCSEEEEEEBSCTTTTCCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCTTCCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CchhhEEEEEccCCCCCcEEEeeeCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCcCcccceEEEEEEECCCCC
Confidence            56779999999764 3499999999999999999999999999999999998775 357899999999999999999999


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCC-CCCCCCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKIS-PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~-~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      +|++||||++.+..      +|..|. +.|........ +|...+|                   +|+||+.+|++++++
T Consensus       104 ~~~vGDrV~~~~~~------~c~~g~-~~c~~~~~~~~~~g~~~~G-------------------~~aey~~v~~~~~~~  157 (363)
T 3uog_A          104 RFRPGDRVISTFAP------GWLDGL-RPGTGRTPAYETLGGAHPG-------------------VLSEYVVLPEGWFVA  157 (363)
T ss_dssp             SCCTTCEEEECSST------TCCSSS-CCSCSSCCCCCCTTTTSCC-------------------CCBSEEEEEGGGEEE
T ss_pred             CCCCCCEEEEeccc------cccccc-cccccccccccccCcCCCC-------------------cceeEEEechHHeEE
Confidence            99999999987543      677788 88874322111 3444444                   999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +|+++++++||++++++.|||+++.+.+++++|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++++|+++
T Consensus       158 iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  236 (363)
T 3uog_A          158 APKSLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGADH  236 (363)
T ss_dssp             CCTTSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTCSE
T ss_pred             CCCCCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCCCE
Confidence            999999999999999999999988788999999999999999999999999999999 9999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEE
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  328 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  328 (388)
                      ++|.+.   +++.+.+++.+++ ++|+||||+|... +..++++++++ |+++.+|.... ....++...++.+++++.|
T Consensus       237 vi~~~~---~~~~~~v~~~~~g~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~~i~g  310 (363)
T 3uog_A          237 GINRLE---EDWVERVYALTGDRGADHILEIAGGAG-LGQSLKAVAPD-GRISVIGVLEG-FEVSGPVGPLLLKSPVVQG  310 (363)
T ss_dssp             EEETTT---SCHHHHHHHHHTTCCEEEEEEETTSSC-HHHHHHHEEEE-EEEEEECCCSS-CEECCBTTHHHHTCCEEEE
T ss_pred             EEcCCc---ccHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhhcC-CEEEEEecCCC-cccCcCHHHHHhCCcEEEE
Confidence            999554   6889999999988 9999999999765 89999999997 99999997542 3456777778889999999


Q ss_pred             eeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEee
Q 016507          329 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWM  386 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~  386 (388)
                      ++...   .++++++++++++|++  +++++++|||+++++|++.+.++..+|+||++
T Consensus       311 ~~~~~---~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~gKvvi~~  363 (363)
T 3uog_A          311 ISVGH---RRALEDLVGAVDRLGL--KPVIDMRYKFTEVPEALAHLDRGPFGKVVIEF  363 (363)
T ss_dssp             CCCCC---HHHHHHHHHHHHHHTC--CCCEEEEEEGGGHHHHHHTGGGCCSBEEEEEC
T ss_pred             EecCC---HHHHHHHHHHHHcCCC--ccceeeEEcHHHHHHHHHHHHcCCCccEEEeC
Confidence            87543   4689999999999964  56799999999999999999988866999975

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=100.00  E-value=2.3e-57  Score=429.18  Aligned_cols=332  Identities=26%  Similarity=0.414  Sum_probs=272.5

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC--CCCCCcccccceeEEEEEecCCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--PAVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--~~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      .+|||+++.+++.+++++++|.|+|+++||||||.+++||++|++.+.|.++  ...+|.++|||++|+|+++|++ ++|
T Consensus         2 ~~mka~~~~~~g~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~p~i~G~E~~G~V~~vG~~-~~~   80 (344)
T 2h6e_A            2 VKSKAALLKKFSEPLSIEDVNIPEPQGEEVLIRIGGAGVCRTDLRVWKGVEAKQGFRLPIILGHENAGTIVEVGEL-AKV   80 (344)
T ss_dssp             EEEEBCEECSCCC-----EEEECCCCTTCEEEEEEEEECCHHHHHHHTTSCCCTTCCSSEECCCCEEEEEEEECTT-CCC
T ss_pred             ceeEEEEEecCCCCCeEEEeeCCCCCCCEEEEEEEEEEechhhHHHHcCCCcccCCCCCccccccceEEEEEECCC-CCC
Confidence            4699999999986699999999999999999999999999999999998765  3468999999999999999999 999


Q ss_pred             CCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEee-cCceEEcC
Q 016507           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVVKVD  171 (388)
Q Consensus        93 ~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~-~~~~~~lP  171 (388)
                      ++||||+..+..+|+.|.+|++|++++|.+...   +|...+|                   +|+||+++| +++++++ 
T Consensus        81 ~~GdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~~~i-  137 (344)
T 2h6e_A           81 KKGDNVVVYATWGDLTCRYCREGKFNICKNQII---PGQTTNG-------------------GFSEYMLVKSSRWLVKL-  137 (344)
T ss_dssp             CTTCEEEECSCBCCSCSTTGGGTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEESCGGGEEEE-
T ss_pred             CCCCEEEECCCCCCCCChhhhCCCcccCCCccc---cccccCC-------------------cceeeEEecCcccEEEe-
Confidence            999999888888999999999999999987653   4544445                   999999999 9999999 


Q ss_pred             CCCCccccccccchhhhhHHHHHHh----cCCCCCCEEEEEccchhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHHc
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRT----ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRF  245 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~----~~~~~~~~VlI~Gag~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~l  245 (388)
                      +++++++||.+++++.|||+++...    .++ +|++|||+|+|++|++++|+|+.+  |+ +|+++++++++.++++++
T Consensus       138 ~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~l  215 (344)
T 2h6e_A          138 NSLSPVEAAPLADAGTTSMGAIRQALPFISKF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALEL  215 (344)
T ss_dssp             SSSCHHHHGGGGTHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHH
T ss_pred             CCCCHHHhhhhhhhhHHHHHHHHhhhhcccCC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHh
Confidence            9999999999999999999987654    288 999999999999999999999999  99 899999999999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCc
Q 016507          246 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  324 (388)
Q Consensus       246 ga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  324 (388)
                      |+++++|+++   .  .+.+.+++++ ++|+||||+|....++.++++++++ |+++.+|...  ....++...++.+++
T Consensus       216 Ga~~vi~~~~---~--~~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~  287 (344)
T 2h6e_A          216 GADYVSEMKD---A--ESLINKLTDGLGASIAIDLVGTEETTYNLGKLLAQE-GAIILVGMEG--KRVSLEAFDTAVWNK  287 (344)
T ss_dssp             TCSEEECHHH---H--HHHHHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEE-EEEEECCCCS--SCCCCCHHHHHHTTC
T ss_pred             CCCEEecccc---c--hHHHHHhhcCCCccEEEECCCChHHHHHHHHHhhcC-CEEEEeCCCC--CCcccCHHHHhhCCc
Confidence            9999998643   1  2234455656 8999999999986699999999997 9999999753  345678778888999


Q ss_pred             EEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          325 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       325 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ++.|++...   .++++++++++++|++.+  .+ ++|||+++++|++.+++++. +|+||++
T Consensus       288 ~i~g~~~~~---~~~~~~~~~l~~~g~i~~--~i-~~~~l~~~~~A~~~~~~~~~~gKvvl~~  344 (344)
T 2h6e_A          288 KLLGSNYGS---LNDLEDVVRLSESGKIKP--YI-IKVPLDDINKAFTNLDEGRVDGRQVITP  344 (344)
T ss_dssp             EEEECCSCC---HHHHHHHHHHHHTTSSCC--CE-EEECC----------------CEEEECC
T ss_pred             EEEEEecCC---HHHHHHHHHHHHcCCCCc--ce-EEEeHHHHHHHHHHHHcCCCceEEEEeC
Confidence            999986432   467999999999997654  47 99999999999999988764 6999864

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=100.00  E-value=2.5e-58  Score=438.36  Aligned_cols=338  Identities=20%  Similarity=0.262  Sum_probs=289.4

Q ss_pred             CCcceeeeeecCCCCCeEEEE--eecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCC
Q 016507           13 KPIQCRAAIATAPGEPLVIDE--VIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~~--~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      +|++|||+++.+++.++++++  +|.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|+
T Consensus         3 ~p~~mka~~~~~~~~~l~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~GhE~~G~V~~vG~~v~   82 (360)
T 1piw_A            3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN   82 (360)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CChheEEEEEecCCCCeeEEeccccCCCCCCCeEEEEEEEeccchhhHHHhcCCCCCCCCCcccCcCceEEEEEeCCCCC
Confidence            456799999999986689999  999999999999999999999999999998766556899999999999999999999


Q ss_pred             -CCCCCCEEeecC-CCCCCCCccccCCCCCCCCCC-CCCCC---CCCCCCCCccccccCCceecccccccceeeeEEeec
Q 016507           91 -GVVEGDVVIPHF-LADCTECVGCRSKKGNLCSAF-PFKIS---PWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (388)
Q Consensus        91 -~~~vGd~V~~~~-~~~~~~c~~c~~~~~~~c~~~-~~~~~---~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~  164 (388)
                       +|++||||++.+ ...|+.|.+|++|++++|.+. .....   .|...+                   |+|+||+++++
T Consensus        83 ~~~~~GdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~-------------------G~~aey~~v~~  143 (360)
T 1piw_A           83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQPYEDGYVSQ-------------------GGYANYVRVHE  143 (360)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSSCBCTTSCBCC-------------------CSSBSEEEEEG
T ss_pred             CCCCCCCEEEEecCCCCCCCChhhcCCCcccCcchhhccccccCCCccCC-------------------CcceeEEEEch
Confidence             999999996554 578999999999999999865 11000   022223                   49999999999


Q ss_pred             CceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       165 ~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      ++++++|+++++++||++++++.|||+++.+ +++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++++++++
T Consensus       144 ~~~~~iP~~~~~~~aa~l~~~~~ta~~~l~~-~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          144 HFVVPIPENIPSHLAAPLLCGGLTVYSPLVR-NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMK  221 (360)
T ss_dssp             GGEEECCTTSCHHHHGGGGTHHHHHHHHHHH-TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHH
T ss_pred             hheEECCCCCCHHHhhhhhhhHHHHHHHHHH-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHH
Confidence            9999999999999999999999999998755 899999999999999999999999999999 89999999999999999


Q ss_pred             cCCcEEEcCCCCCCc-cHHHHHHhhcCCCccEEEEccCC--HHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHh
Q 016507          245 FGVTEFVNSKNCGDK-SVSQIIIDMTDGGADYCFECVGL--ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH  321 (388)
Q Consensus       245 lga~~v~~~~~~~~~-~~~~~i~~~~~g~~dvvid~~g~--~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~  321 (388)
                      +|+++++|+++   . ++.+.+.    +++|+|||++|.  ...++.++++++++ |+++.+|....  ...++...++.
T Consensus       222 lGa~~v~~~~~---~~~~~~~~~----~~~D~vid~~g~~~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~  291 (360)
T 1piw_A          222 MGADHYIATLE---EGDWGEKYF----DTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPEQ--HEMLSLKPYGL  291 (360)
T ss_dssp             HTCSEEEEGGG---TSCHHHHSC----SCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCCS--SCCEEECGGGC
T ss_pred             cCCCEEEcCcC---chHHHHHhh----cCCCEEEECCCCCcHHHHHHHHHHhcCC-CEEEEecCCCC--ccccCHHHHHh
Confidence            99999999876   4 5555443    489999999998  55588999999997 99999997542  11455556778


Q ss_pred             cCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecch--HHHHHHHHhcCce-eEEEEeeC
Q 016507          322 SGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEE--INSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       322 ~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~--~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      +++++.|++...   .++++++++++++|++.+.  + ++|||++  +++|++.+++++. +|+||+++
T Consensus       292 ~~~~i~g~~~~~---~~~~~~~~~l~~~g~l~~~--i-~~~~l~~~~~~~A~~~~~~~~~~gKvvi~~~  354 (360)
T 1piw_A          292 KAVSISYSALGS---IKELNQLLKLVSEKDIKIW--V-ETLPVGEAGVHEAFERMEKGDVRYRFTLVGY  354 (360)
T ss_dssp             BSCEEEECCCCC---HHHHHHHHHHHHHTTCCCC--E-EEEESSHHHHHHHHHHHHHTCCSSEEEEECC
T ss_pred             CCeEEEEEecCC---HHHHHHHHHHHHhCCCcce--E-EEEeccHhHHHHHHHHHHCCCCceEEEEecC
Confidence            899999986432   4678999999999977544  6 9999999  9999999988764 69999875

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=100.00  E-value=1.2e-57  Score=439.82  Aligned_cols=344  Identities=19%  Similarity=0.269  Sum_probs=300.5

Q ss_pred             CCCCCCcceeeeeecCCCCCeEEEEeecCC-CCCCeEEEEEceeccCcccccccccCC------C-CCCCCcccccceeE
Q 016507            9 KTAGKPIQCRAAIATAPGEPLVIDEVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKD------F-PAVFPRILGHEAIG   80 (388)
Q Consensus         9 ~~~~~~~~~ka~~~~~~~~~~~~~~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~------~-~~~~p~v~G~e~~G   80 (388)
                      .....+.+|++.++..++. ++++++|.|+ |+++||||||.+++||++|++++.|..      + ...+|.++|||++|
T Consensus        23 ~~~~~~~~m~a~~~~~~~~-l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~P~i~G~E~~G  101 (404)
T 3ip1_A           23 KDIEGKLTWLGSKVWRYPE-VRVEEVPEPRIEKPTEIIIKVKACGICGSDVHMAQTDEEGYILYPGLTGFPVTLGHEFSG  101 (404)
T ss_dssp             TCBTTTBBSCGGGTEEEEE-EEEEEECCCCCCSTTEEEEEEEEEECCHHHHHHHCBCTTSBBSCCSCBCSSEECCCEEEE
T ss_pred             hhhhhhhhcceEEEEeCCc-eEEEEcCCCCCCCcCEEEEEEeEeeeCHHHHHHhcCCCCccccccccCCCCcccCccceE
Confidence            3344556677777766664 9999999999 999999999999999999999988642      1 23679999999999


Q ss_pred             EEEEecCCC------CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccccc
Q 016507           81 VVESVGENV------DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVS  154 (388)
Q Consensus        81 ~Vv~vG~~v------~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g  154 (388)
                      +|+++|++|      ++|++||||++.+...|+.|.+|++|+.++|.+...   .|+..+|                   
T Consensus       102 ~V~~vG~~v~~~~~~~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~g~~~~G-------------------  159 (404)
T 3ip1_A          102 VVVEAGPEAINRRTNKRFEIGEPVCAEEMLWCGHCRPCAEGFPNHCENLNE---LGFNVDG-------------------  159 (404)
T ss_dssp             EEEEECTTCEETTTTEECCTTCEEEECSEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------
T ss_pred             EEEEECCCccccccCCCCCCCCEEEECCccCCCCCHHHHCcCcccCccccc---cCCCCCC-------------------
Confidence            999999999      899999999999999999999999999999998764   5665556                   


Q ss_pred             ceeeeEEeecCceEEcCCCCCc------cccccccchhhhhHHHHHHh-cCCCCCCEEEEEccchhHHHHHHHHHHcCCc
Q 016507          155 SFSEYTVLDIAHVVKVDPTVPP------NRACLLSCGVSTGVGAAWRT-ANVEVGSTVVIFGLGSIGLAVAEGARLCGAT  227 (388)
Q Consensus       155 ~~a~~~~~~~~~~~~lP~~~~~------~~aa~~~~~~~ta~~~l~~~-~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~  227 (388)
                      +|+||+.++.++++++|++++.      .++|+++.+++|||+++... +++++|++|||+|+|++|++++|+|+.+|+.
T Consensus       160 ~~aey~~v~~~~~~~iP~~~~~~~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~  239 (404)
T 3ip1_A          160 AFAEYVKVDAKYAWSLRELEGVYEGDRLFLAGSLVEPTSVAYNAVIVRGGGIRPGDNVVILGGGPIGLAAVAILKHAGAS  239 (404)
T ss_dssp             SSBSEEEEEGGGEEECGGGBTTBCTHHHHHHHHTHHHHHHHHHHHTTTSCCCCTTCEEEEECCSHHHHHHHHHHHHTTCS
T ss_pred             CCcceEEechHHeEeccccccccccccchhHHhhhhHHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCC
Confidence            9999999999999999998863      45888888999999987654 4899999999999999999999999999998


Q ss_pred             EEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCH-HHHHHHHHHh----hcCCceEE
Q 016507          228 RIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA-SLVQEAYACC----RKGWGKTI  301 (388)
Q Consensus       228 ~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~-~~~~~~~~~l----~~~~G~~v  301 (388)
                      +|++++++++|+++++++|+++++|+++   .++.+.+++++++ ++|+||||+|+. ..+..+++++    +++ |+++
T Consensus       240 ~Vi~~~~~~~~~~~~~~lGa~~vi~~~~---~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~-G~iv  315 (404)
T 3ip1_A          240 KVILSEPSEVRRNLAKELGADHVIDPTK---ENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGIN-ATVA  315 (404)
T ss_dssp             EEEEECSCHHHHHHHHHHTCSEEECTTT---SCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCC-CEEE
T ss_pred             EEEEECCCHHHHHHHHHcCCCEEEcCCC---CCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCC-cEEE
Confidence            9999999999999999999999999988   7899999999988 999999999998 3477788888    997 9999


Q ss_pred             EEccCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeE
Q 016507          302 VLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLR  381 (388)
Q Consensus       302 ~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~k  381 (388)
                      .+|...  ....++...++.+++++.|++...  ..++++++++++++| +.+.++++++|||+++++|++.+.   .+|
T Consensus       316 ~~G~~~--~~~~~~~~~~~~~~~~i~g~~~~~--~~~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~~~A~~~~~---~GK  387 (404)
T 3ip1_A          316 IVARAD--AKIPLTGEVFQVRRAQIVGSQGHS--GHGTFPRVISLMASG-MDMTKIISKTVSMEEIPEYIKRLQ---TDK  387 (404)
T ss_dssp             ECSCCC--SCEEECHHHHHHTTCEEEECCCCC--STTHHHHHHHHHHTT-CCGGGGCCEEECGGGHHHHHHHTT---TCT
T ss_pred             EeCCCC--CCCcccHHHHhccceEEEEecCCC--chHHHHHHHHHHHcC-CChhheEEEEeeHHHHHHHHHHHh---CCc
Confidence            999754  345788888999999999986432  246899999999999 999999999999999999999987   347


Q ss_pred             EEEeeC
Q 016507          382 CVIWMG  387 (388)
Q Consensus       382 vvv~~~  387 (388)
                      +||+++
T Consensus       388 vvl~~~  393 (404)
T 3ip1_A          388 SLVKVT  393 (404)
T ss_dssp             TCSCEE
T ss_pred             EEEecC
Confidence            777654

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=100.00  E-value=5e-58  Score=435.77  Aligned_cols=331  Identities=18%  Similarity=0.194  Sum_probs=290.7

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCC---CcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF---PRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~---p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+++++++++++|.|+|+++||||||.+++||++|+++++|.++...+   |.++|||++| |+++|++ ++|+
T Consensus         1 MkA~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~p~v~G~E~~G-V~~vG~~-~~~~   78 (357)
T 2b5w_A            1 MKAIAVKRGEDRPVVIEKPRPEPESGEALVRTLRVGVCGTDHEVIAGGHGGFPEGEDHLVLGHEAVG-VVVDPND-TELE   78 (357)
T ss_dssp             CEEEEEETTCSSCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHSCSTTSCTTCSEEECCSEEEE-EEEECTT-SSCC
T ss_pred             CeEEEEeCCCCceEEEECCCCCCCcCEEEEEEeEEeechhcHHHHcCCCCCCCCCCCCcccCceeEE-EEEECCC-CCCC
Confidence            799999999877999999999999999999999999999999999987654566   8999999999 9999999 9999


Q ss_pred             CCCEEeecCCCC--CCCCccccCCCCCCCCCCCCCCCC--CC-CCCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           94 EGDVVIPHFLAD--CTECVGCRSKKGNLCSAFPFKISP--WM-PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        94 vGd~V~~~~~~~--~~~c~~c~~~~~~~c~~~~~~~~~--g~-~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      +||||++.+...  |+.|.+|++|++++|.+...   +  |+ ..+                   |+|+||+++++++++
T Consensus        79 vGdrV~~~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~-------------------G~~aey~~v~~~~~~  136 (357)
T 2b5w_A           79 EGDIVVPTVRRPPASGTNEYFERDQPDMAPDGMY---FERGIVGAH-------------------GYMSEFFTSPEKYLV  136 (357)
T ss_dssp             TTCEEEECSEECCTTCCCHHHHTTCGGGCCTTSC---EEETTBEEC-------------------CSCBSEEEEEGGGEE
T ss_pred             CCCEEEECCcCCCCCCCChHHhCcCcccCCCCcc---cccCccCCC-------------------cceeeEEEEchHHeE
Confidence            999999988877  99999999999999987653   2  33 223                   499999999999999


Q ss_pred             EcCCCCCccccccccchhhhhHHHHHHhcCCCCC------CEEEEEccchhHHHH-HHHH-HHcCCcEEEEEcCCch---
Q 016507          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG------STVVIFGLGSIGLAV-AEGA-RLCGATRIIGVDVISE---  237 (388)
Q Consensus       169 ~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~------~~VlI~Gag~vG~~a-i~la-~~~g~~~Vi~~~~~~~---  237 (388)
                      ++|++++ ++ |+++.+++|||+++ +.+++++|      ++|||+|+|++|+++ +|+| +.+|+++|++++++++   
T Consensus       137 ~iP~~~~-~~-aal~~~~~ta~~al-~~~~~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~  213 (357)
T 2b5w_A          137 RIPRSQA-EL-GFLIEPISITEKAL-EHAYASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDP  213 (357)
T ss_dssp             ECCGGGS-TT-GGGHHHHHHHHHHH-HHHHHTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCH
T ss_pred             ECCCCcc-hh-hhhhchHHHHHHHH-HhcCCCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHH
Confidence            9999999 55 45677999999987 67889999      999999999999999 9999 9999955999999999   


Q ss_pred             HHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHH
Q 016507          238 KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF  317 (388)
Q Consensus       238 ~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~  317 (388)
                      +.++++++|++++ |+++   +++.+ ++++ ++++|+||||+|+...+..++++++++ |+++.+|.... ...+++..
T Consensus       214 ~~~~~~~lGa~~v-~~~~---~~~~~-i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~  285 (357)
T 2b5w_A          214 TIDIIEELDATYV-DSRQ---TPVED-VPDV-YEQMDFIYEATGFPKHAIQSVQALAPN-GVGALLGVPSD-WAFEVDAG  285 (357)
T ss_dssp             HHHHHHHTTCEEE-ETTT---SCGGG-HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEE-EEEEECCCCCC-CCCCCCHH
T ss_pred             HHHHHHHcCCccc-CCCc---cCHHH-HHHh-CCCCCEEEECCCChHHHHHHHHHHhcC-CEEEEEeCCCC-CCceecHH
Confidence            9999999999999 8877   66777 7777 559999999999986689999999997 99999997542 44567777


Q ss_pred             HH----HhcCcEEEEeeecCCCccCcHHHHHHHHhCC--CCCCCcceeeeEecchHHHHHHHHhcCceeEEEEeeCC
Q 016507          318 EV----LHSGKILMGSLFGGLKAKSDIPILLKRYMDK--ELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE  388 (388)
Q Consensus       318 ~~----~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~~~  388 (388)
                      .+    +.+++++.|++...   .++++++++++++|  ++ +.++++++|||+++++|++.+  +..+|+||++++
T Consensus       286 ~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~~~~-~~~~i~~~~~l~~~~~A~~~~--~~~gKvvi~~~~  356 (357)
T 2b5w_A          286 AFHREMVLHNKALVGSVNSH---VEHFEAATVTFTKLPKWF-LEDLVTGVHPLSEFEAAFDDD--DTTIKTAIEFST  356 (357)
T ss_dssp             HHHHHHHHTTCEEEECCCCC---HHHHHHHHHHHHHSCHHH-HHHHEEEEEEGGGGGGGGCCS--TTCCEEEEECCC
T ss_pred             HHhHHHHhCCeEEEEeccCC---HHHHHHHHHHHHhCchhh-hhhhcceeecHHHHHHHHHHh--CCCceEEEEecC
Confidence            77    78999999986432   46799999999999  76 777889999999999999988  456799999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=100.00  E-value=9.9e-57  Score=425.32  Aligned_cols=334  Identities=27%  Similarity=0.367  Sum_probs=296.5

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC--------CCCCCcccccceeEEEEEecCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------PAVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------~~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      |||+++.+++.+++++++|.|+|+++||||||.+++||++|++++.|.++        ...+|.++|||++|+|+++|++
T Consensus         1 Mka~~~~~~g~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~~~~p~i~G~e~~G~V~~vG~~   80 (347)
T 1jvb_A            1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (347)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEecCCCCeEEEEeeCCCCCCCeEEEEEEEEEecHHHHHHhcCCCcccccccccCCCCCccccccceEEEEEECCC
Confidence            79999999986799999999999999999999999999999999988654        3467999999999999999999


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec-Cce
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI-AHV  167 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~-~~~  167 (388)
                      |++|++||||+..+..+|+.|.+|++|++++|.+...   +|+..+|                   +|+||+.+|+ +++
T Consensus        81 v~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~---~G~~~~G-------------------~~aey~~v~~~~~~  138 (347)
T 1jvb_A           81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (347)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             CCCCCCCCEEEeCCCCCCCCChhhhCcCcccCccccc---ccccCCC-------------------cceeEEEecCccce
Confidence            9999999999888888999999999999999987653   4544445                   9999999999 999


Q ss_pred             EEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHHc
Q 016507          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRF  245 (388)
Q Consensus       168 ~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~l  245 (388)
                      +++ +++++++||.+++++.|||+++ +.+++++|++|||+|+ |++|++++|+++.. |+ +|+++++++++.++++++
T Consensus       139 ~~i-~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~  215 (347)
T 1jvb_A          139 YKL-RRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRA  215 (347)
T ss_dssp             EEC-SSSCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHH
T ss_pred             EEe-CCCCHHHcccchhhHHHHHHHH-HhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHh
Confidence            999 9999999999999999999987 4589999999999998 59999999999999 99 899999999999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHhhcC-CCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCc
Q 016507          246 GVTEFVNSKNCGDKSVSQIIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  324 (388)
Q Consensus       246 ga~~v~~~~~~~~~~~~~~i~~~~~-g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  324 (388)
                      |+++++|+.+   .++.+.+.+.+. +++|++||++|....++.++++++++ |+++.+|.... .. .++...++.+++
T Consensus       216 g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~-~~~~~~~~~~~~  289 (347)
T 1jvb_A          216 GADYVINASM---QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFGA-DL-HYHAPLITLSEI  289 (347)
T ss_dssp             TCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSCC-CC-CCCHHHHHHHTC
T ss_pred             CCCEEecCCC---ccHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcC-CEEEEECCCCC-CC-CCCHHHHHhCce
Confidence            9999999887   677788888876 58999999999986699999999997 99999997541 23 677777888899


Q ss_pred             EEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          325 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       325 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ++.|+....   .++++++++++++|++  +++++++|||+++++|++.+++++. +|+||++
T Consensus       290 ~i~g~~~~~---~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  347 (347)
T 1jvb_A          290 QFVGSLVGN---QSDFLGIMRLAEAGKV--KPMITKTMKLEEANEAIDNLENFKAIGRQVLIP  347 (347)
T ss_dssp             EEEECCSCC---HHHHHHHHHHHHTTSS--CCCCEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             EEEEEeccC---HHHHHHHHHHHHcCCC--CceEEEEEcHHHHHHHHHHHHCCCCcceEEecC
Confidence            999986432   4679999999999976  4568899999999999999988775 6999874

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=100.00  E-value=2.1e-57  Score=437.47  Aligned_cols=345  Identities=20%  Similarity=0.281  Sum_probs=296.7

Q ss_pred             ceeeeeecCCCCCeEEEEeecCCC-CC-----CeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           16 QCRAAIATAPGEPLVIDEVIVDPP-NS-----HEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        16 ~~ka~~~~~~~~~~~~~~~~~p~~-~~-----~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      +|||+++.+++. ++++++|.|+| ++     +||||||.+++||++|+++++|..+ ..+|.++|||++|+|+++|++|
T Consensus         2 ~MkA~~~~~~~~-l~~~~~p~P~~~~~~~~~~~eVlVkv~a~gic~~D~~~~~G~~~-~~~p~v~GhE~~G~V~~vG~~v   79 (398)
T 2dph_A            2 GNKSVVYHGTRD-LRVETVPYPKLEHNNRKLEHAVILKVVSTNICGSDQHIYRGRFI-VPKGHVLGHEITGEVVEKGSDV   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSEETTEECTTCEEEEEEEEECCHHHHHHHTTSSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             ccEEEEEEcCCC-EEEEEccCCCCCCCcCCCCCeEEEEEEEEeecHHHHHHhcCCCC-CCCCcccCCceEEEEEEECCCC
Confidence            599999999875 99999999998 68     9999999999999999999998643 4679999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCC-----CCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK-----ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~-----~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~  164 (388)
                      ++|++||||++.+..+|+.|.+|++|++++|.+....     ..+|+.. +               ...|+|+||++++.
T Consensus        80 ~~~~vGDrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~~G~~~-~---------------~~~G~~aey~~v~~  143 (398)
T 2dph_A           80 ELMDIGDLVSVPFNVACGRCRNCKEARSDVCENNLVNPDADLGAFGFDL-K---------------GWSGGQAEYVLVPY  143 (398)
T ss_dssp             CSCCTTCEEECCSBCCCSCSHHHHTTCGGGCCCTTTCSSSSCCBTTTTB-S---------------SCCCSSBSEEEESS
T ss_pred             CCCCCCCEEEEcCCCCCCCChhhhCcCcccCCCcccccccccccccccc-C---------------CCCceeeeeEEecc
Confidence            9999999999999999999999999999999862110     0122210 0               01259999999998


Q ss_pred             C--ceEEcCCCCCccc----cccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchH
Q 016507          165 A--HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK  238 (388)
Q Consensus       165 ~--~~~~lP~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~  238 (388)
                      +  +++++|+++++++    ||+++++++|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+.+|+++++++++
T Consensus       144 ~~~~~~~iP~~~~~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~  222 (398)
T 2dph_A          144 ADYMLLKFGDKEQAMEKIKDLTLISDILPTGFHGC-VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPER  222 (398)
T ss_dssp             HHHHCEECSSHHHHHHTHHHHTTTTTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHH
T ss_pred             ccCeEEECCCCCChhhhcchhhhhcCHHHHHHHHH-HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHH
Confidence            7  8999999999998    889999999999987 78899999999999999999999999999998889999999999


Q ss_pred             HHHHHHcCCcEEEcCCCCCCccH-HHHHHhhcCC-CccEEEEccCCHH--------------HHHHHHHHhhcCCceEEE
Q 016507          239 FEIGKRFGVTEFVNSKNCGDKSV-SQIIIDMTDG-GADYCFECVGLAS--------------LVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       239 ~~~~~~lga~~v~~~~~~~~~~~-~~~i~~~~~g-~~dvvid~~g~~~--------------~~~~~~~~l~~~~G~~v~  302 (388)
                      +++++++|++ ++|+++   .++ .+.+++++++ ++|+||||+|+..              .+..++++++++ |+++.
T Consensus       223 ~~~a~~lGa~-~i~~~~---~~~~~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~g-G~iv~  297 (398)
T 2dph_A          223 LKLLSDAGFE-TIDLRN---SAPLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAG-GAIGI  297 (398)
T ss_dssp             HHHHHTTTCE-EEETTS---SSCHHHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEE-EEEEC
T ss_pred             HHHHHHcCCc-EEcCCC---cchHHHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcC-CEEEE
Confidence            9999999996 888876   565 8888888888 8999999999752              589999999997 99999


Q ss_pred             EccCCC-----------CCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCC--CCcceeeeEecchHHH
Q 016507          303 LGVDQP-----------GSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE--LDKFVTHEMKFEEINS  369 (388)
Q Consensus       303 ~g~~~~-----------~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~  369 (388)
                      +|...+           .....++...++.+++++.++...   ..++++++++++++|+++  +.++++++|||+++++
T Consensus       298 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~---~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~~~  374 (398)
T 2dph_A          298 PGIYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAP---VTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQAPD  374 (398)
T ss_dssp             CSCCCSCCSSCSSHHHHTTEEEEEHHHHHHTTCEEECSSCC---GGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTHHH
T ss_pred             eccccccccccccccccCCcccccHHHHhhcCCEEEEeccC---cHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHHHH
Confidence            997521           133466777788899999886432   246789999999999887  7778899999999999


Q ss_pred             HHHHHhcCceeEEEEeeC
Q 016507          370 AFDLLIKGKCLRCVIWMG  387 (388)
Q Consensus       370 A~~~~~~~~~~kvvv~~~  387 (388)
                      |++.+.++..+|+||+++
T Consensus       375 A~~~~~~~~~gKvvv~~~  392 (398)
T 2dph_A          375 GYAKFDKGSPAKFVIDPH  392 (398)
T ss_dssp             HHHHHHTTCSCEEEECTT
T ss_pred             HHHHHhcCCceEEEEecC
Confidence            999998876689999864

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.7e-57  Score=430.32  Aligned_cols=346  Identities=21%  Similarity=0.334  Sum_probs=285.7

Q ss_pred             CCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCC
Q 016507           11 AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      ..+.|+|||+++.+++++++++++|.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|+
T Consensus        17 ~~~~~~~~a~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~   96 (369)
T 1uuf_A           17 KKAGLKIKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVE   96 (369)
T ss_dssp             ------CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCC
T ss_pred             HhcCceEEEEEEcCCCCCcEEEEecCCCCCCCeEEEEEEEEeecHHHHHHhcCCCCCCCCCeecccCceEEEEEECCCCC
Confidence            45678999999998877799999999999999999999999999999999998765556799999999999999999999


Q ss_pred             CCCCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           91 GVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        91 ~~~vGd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      +|++||||++.+. ..|+.|.+|++|++++|.+.... ..+.. ..|              ....|+|+||+.+|.++++
T Consensus        97 ~~~vGDrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~-~~~~~~~~g--------------~~~~G~~aeyv~v~~~~~~  161 (369)
T 1uuf_A           97 KYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGT-YNSPTPDEP--------------GHTLGGYSQQIVVHERYVL  161 (369)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCSSTT--------------SBCCCSSBSEEEEEGGGCE
T ss_pred             CCCCCCEEEEccCCCCCCCCcccCCCCcccCcchhcc-cccccccCC--------------CCCCCcccceEEEcchhEE
Confidence            9999999998776 46999999999999999875211 00000 001              1123599999999999999


Q ss_pred             EcCCC-CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          169 KVDPT-VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       169 ~lP~~-~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      ++|++ +++++||++++++.|||+++.+ +++++|++|||+|+|++|++++|+|+.+|+ +|+++++++++.++++++|+
T Consensus       162 ~~P~~~ls~~~aa~l~~~~~tA~~al~~-~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa  239 (369)
T 1uuf_A          162 RIRHPQEQLAAVAPLLCAGITTYSPLRH-WQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGA  239 (369)
T ss_dssp             ECCSCGGGHHHHGGGGTHHHHHHHHHHH-TTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTC
T ss_pred             ECCCCCCCHHHhhhhhhhHHHHHHHHHh-cCCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC
Confidence            99999 9999999999999999998754 689999999999999999999999999999 79999999999999999999


Q ss_pred             cEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEE
Q 016507          248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  327 (388)
Q Consensus       248 ~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  327 (388)
                      ++++|+++   .++.+   +.. +++|+||||+|....++.++++++++ |+++.+|..... ...++...++.+++++.
T Consensus       240 ~~vi~~~~---~~~~~---~~~-~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~~-~~~~~~~~~~~~~~~i~  310 (369)
T 1uuf_A          240 DEVVNSRN---ADEMA---AHL-KSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAPATP-HKSPEVFNLIMKRRAIA  310 (369)
T ss_dssp             SEEEETTC---HHHHH---TTT-TCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEE
T ss_pred             cEEecccc---HHHHH---Hhh-cCCCEEEECCCCHHHHHHHHHHhccC-CEEEEeccCCCC-ccccCHHHHHhCCcEEE
Confidence            99999876   44433   332 48999999999875589999999997 999999975321 12567777888999999


Q ss_pred             EeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeCC
Q 016507          328 GSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       328 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                      |++...   .++++++++++++|++.+.  + ++|||+++++|++.+.++.. +|+||++++
T Consensus       311 g~~~~~---~~~~~~~~~l~~~g~i~~~--i-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  366 (369)
T 1uuf_A          311 GSMIGG---IPETQEMLDFCAEHGIVAD--I-EMIRADQINEAYERMLRGDVKYRFVIDNRT  366 (369)
T ss_dssp             ECCSCC---HHHHHHHHHHHHHHTCCCC--E-EEECGGGHHHHHHHHHTTCSSSEEEEEGGG
T ss_pred             EeecCC---HHHHHHHHHHHHhCCCCcc--e-EEEcHHHHHHHHHHHHcCCCceEEEEecCC
Confidence            986433   3678999999999977653  5 57999999999999988764 699998753

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=1.6e-56  Score=431.58  Aligned_cols=347  Identities=20%  Similarity=0.252  Sum_probs=292.8

Q ss_pred             ceeeeeecCCCCCeEEEEeecCCCC-CCe------EEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCC
Q 016507           16 QCRAAIATAPGEPLVIDEVIVDPPN-SHE------VRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        16 ~~ka~~~~~~~~~~~~~~~~~p~~~-~~e------VlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      +|||+++.+++. ++++++|.|+|+ ++|      |||||.+++||++|+++++|.++ .++|.++|||++|+|+++|++
T Consensus         2 ~Mka~~~~~~~~-l~~~~~p~P~~~~~~e~~~~~eVlVkv~a~gi~~~D~~~~~g~~~-~~~p~v~GhE~~G~V~~vG~~   79 (398)
T 1kol_A            2 GNRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRD   79 (398)
T ss_dssp             CEEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTT
T ss_pred             ccEEEEEecCCc-eEEEEecCCCCCCCCcccccceEEEEEEEEeechhhHHHHcCCCC-CCCCcccCcccEEEEEEECCC
Confidence            599999999875 999999999997 898      99999999999999999998653 357899999999999999999


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCC---CCCCCCCCCccccccCCceecccccccceeeeEEeecC
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKI---SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~---~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~  165 (388)
                      |++|++||||++.+..+|+.|.+|++|++++|.+.....   .+|+...+               ...|+|+||++++.+
T Consensus        80 v~~~~vGDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~---------------~~~G~~aey~~v~~~  144 (398)
T 1kol_A           80 VENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYVDMG---------------DWTGGQAEYVLVPYA  144 (398)
T ss_dssp             CCSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCTTSC---------------CBCCCSBSEEEESSH
T ss_pred             CCcCCCCCEEEECCcCCCCCChHHhCcCcccCCCcccccccceeeeccCC---------------CCCceeeeEEEecch
Confidence            999999999999888999999999999999998754210   01221000               012599999999986


Q ss_pred             --ceEEcCCCCCccc----cccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          166 --HVVKVDPTVPPNR----ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       166 --~~~~lP~~~~~~~----aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                        +++++|+++++++    +|++++++.|||+++. .+++++|++|||+|+|++|++++|+|+.+|+++|++++++++|+
T Consensus       145 ~~~~~~~P~~~~~~~~~~~aa~l~~~~~ta~~al~-~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~  223 (398)
T 1kol_A          145 DFNLLKLPDRDKAMEKIRDLTCLSDILPTGYHGAV-TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL  223 (398)
T ss_dssp             HHHCEECSCHHHHHHTHHHHGGGGTHHHHHHHHHH-HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             hCeEEECCCCcchhhhcccccccccHHHHHHHHHH-HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHH
Confidence              8999999999888    7889989999999874 78999999999999999999999999999997899999999999


Q ss_pred             HHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCH---------------HHHHHHHHHhhcCCceEEEE
Q 016507          240 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLA---------------SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       240 ~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~---------------~~~~~~~~~l~~~~G~~v~~  303 (388)
                      ++++++|++ ++|+++  ...+.+.+++++++ ++|+||||+|+.               ..+..++++++++ |+++.+
T Consensus       224 ~~a~~lGa~-~i~~~~--~~~~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-G~iv~~  299 (398)
T 1kol_A          224 AHAKAQGFE-IADLSL--DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIP  299 (398)
T ss_dssp             HHHHHTTCE-EEETTS--SSCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEEC
T ss_pred             HHHHHcCCc-EEccCC--cchHHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcC-CEEEEe
Confidence            999999997 788765  12378889998887 899999999986               2589999999997 999999


Q ss_pred             ccCCCC-----------CccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCC-CCcceeeeEecchHHHHH
Q 016507          304 GVDQPG-----------SQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE-LDKFVTHEMKFEEINSAF  371 (388)
Q Consensus       304 g~~~~~-----------~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~l~~~~~A~  371 (388)
                      |.....           ....++...++.+++++.+...   ...++++++++++.+|+++ +.++++++|||+|+++|+
T Consensus       300 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~~~A~  376 (398)
T 1kol_A          300 GLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT---PVMKYNRALMQAIMWDRINIAEVVGVQVISLDDAPRGY  376 (398)
T ss_dssp             SCCCSCCTTCSSHHHHTTCCCCCHHHHHHTTCEEEESSC---CHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGHHHHH
T ss_pred             ccccCCcccccccccccccccccHHHHhhcccEEEeccc---ChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHHHHHH
Confidence            965211           1245666777888999987632   1235678899999999887 346788999999999999


Q ss_pred             HHHhcCceeEEEEeeC
Q 016507          372 DLLIKGKCLRCVIWMG  387 (388)
Q Consensus       372 ~~~~~~~~~kvvv~~~  387 (388)
                      +.+.+++.+|+||+++
T Consensus       377 ~~~~~~~~gKvvi~~~  392 (398)
T 1kol_A          377 GEFDAGVPKKFVIDPH  392 (398)
T ss_dssp             HHHHHTCSCEEEECTT
T ss_pred             HHHhCCCceEEEEEeC
Confidence            9998876689999874

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=100.00  E-value=8.4e-56  Score=420.34  Aligned_cols=342  Identities=22%  Similarity=0.330  Sum_probs=288.1

Q ss_pred             CCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCC
Q 016507           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      .+|+|+++++.++.+++++.++|.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|
T Consensus         6 ~~m~~~a~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~v~~~   85 (357)
T 2cf5_A            6 AERKTTGWAARDPSGILSPYTYTLRETGPEDVNIRIICCGICHTDLHQTKNDLGMSNYPMVPGHEVVGEVVEVGSDVSKF   85 (357)
T ss_dssp             CCCEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHTCTTTCCCSSBCCCCEEEEEEEEECSSCCSC
T ss_pred             CcceeEEEEEccCCCCcEEEEecCCCCCCCEEEEEEEEEeecchhhhhhcCCCCCCCCCeecCcceeEEEEEECCCCCCC
Confidence            35889999998887679999999999999999999999999999999999876555689999999999999999999999


Q ss_pred             CCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           93 VEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        93 ~vGd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      ++||||++.+. .+|+.|.+|+++++++|.+..+. ..+....|              ....|+|+||+++|+++++++|
T Consensus        86 ~vGdrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~~~g--------------~~~~G~~aey~~v~~~~~~~~P  150 (357)
T 2cf5_A           86 TVGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWS-YNDVYING--------------QPTQGGFAKATVVHQKFVVKIP  150 (357)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEET-TTSBCTTS--------------CBCCCSSBSCEEEEGGGEEECC
T ss_pred             CCCCEEEEcCCCCCCCCChHHhCcCcccCCCcccc-ccccccCC--------------CCCCCccccEEEechhhEEECc
Confidence            99999987654 57999999999999999654321 11110111              1123599999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCC-CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE  249 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~  249 (388)
                      +++++++||++++++.|||+++. ..+++ +|++|||+|+|++|++++|+|+.+|+ +|++++++++++++++ ++|+++
T Consensus       151 ~~ls~~~aa~l~~~~~ta~~~l~-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~  228 (357)
T 2cf5_A          151 EGMAVEQAAPLLCAGVTVYSPLS-HFGLKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLGADD  228 (357)
T ss_dssp             SSCCHHHHTGGGTHHHHHHHHHH-HTSTTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSCCSC
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHH-hcCCCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcCCce
Confidence            99999999999999999999764 57888 99999999999999999999999999 8999999999999888 899999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccc-cCHHHHHhcCcEEEE
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLS-LSSFEVLHSGKILMG  328 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~~~i~g  328 (388)
                      ++|+++   .   +.+.+.+ +++|+||||+|....++.++++++++ |+++.+|....  ... ++.. ++.+++++.|
T Consensus       229 vi~~~~---~---~~~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~~~--~~~~~~~~-~~~~~~~i~g  297 (357)
T 2cf5_A          229 YVIGSD---Q---AKMSELA-DSLDYVIDTVPVHHALEPYLSLLKLD-GKLILMGVINN--PLQFLTPL-LMLGRKVITG  297 (357)
T ss_dssp             EEETTC---H---HHHHHST-TTEEEEEECCCSCCCSHHHHTTEEEE-EEEEECSCCSS--CCCCCHHH-HHHHTCEEEE
T ss_pred             eecccc---H---HHHHHhc-CCCCEEEECCCChHHHHHHHHHhccC-CEEEEeCCCCC--CccccCHH-HHhCccEEEE
Confidence            999865   3   3455554 38999999999875588999999997 99999997432  223 5555 7788999999


Q ss_pred             eeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeCC
Q 016507          329 SLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                      ++...   .++++++++++++|++.+.  + ++|||+++++|++.++++.. +|+||++++
T Consensus       298 ~~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  352 (357)
T 2cf5_A          298 SFIGS---MKETEEMLEFCKEKGLSSI--I-EVVKMDYVNTAFERLEKNDVRYRFVVDVEG  352 (357)
T ss_dssp             CCSCC---HHHHHHHHHHHHHTTCCCC--E-EEEEGGGHHHHHHHHHTTCSSSEEEEETTS
T ss_pred             EccCC---HHHHHHHHHHHHcCCCCCc--e-EEEeHHHHHHHHHHHHCCCCceEEEEeCCc
Confidence            86432   4578999999999987653  4 79999999999999988765 599998753

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=100.00  E-value=9.6e-55  Score=414.27  Aligned_cols=342  Identities=22%  Similarity=0.352  Sum_probs=287.8

Q ss_pred             CCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCC
Q 016507           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      .+|+|+++...++.+++++.++|.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|
T Consensus        13 ~~mk~~~~~~~~~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~P~v~GhE~~G~V~~vG~~V~~~   92 (366)
T 1yqd_A           13 HPVKAFGWAARDQSGHLSPFNFSRRATGEEDVRFKVLYCGVCHSDLHSIKNDWGFSMYPLVPGHEIVGEVTEVGSKVKKV   92 (366)
T ss_dssp             SSEEEEEEEECSTTCCEEEEEEEECCCCTTEEEEEEEEEEECHHHHHHHHTSSSCCCSSBCCCCCEEEEEEEECTTCCSC
T ss_pred             CCeeEEEEEEcCCCCCcEEEEccCCCCCCCeEEEEEEEEeechhhHHHHcCCCCCCCCCEecccceEEEEEEECCCCCcC
Confidence            35777777777766669999999999999999999999999999999999876555689999999999999999999999


Q ss_pred             CCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           93 VEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        93 ~vGd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      ++||||++.+. ..|+.|.+|++|++++|.+..+. +.|....|              ....|+|+||+.+|.++++++|
T Consensus        93 ~vGDrV~~~~~~~~Cg~C~~c~~g~~~~C~~~~~~-~~~~~~~g--------------~~~~G~~aey~~v~~~~~~~~P  157 (366)
T 1yqd_A           93 NVGDKVGVGCLVGACHSCESCANDLENYCPKMILT-YASIYHDG--------------TITYGGYSNHMVANERYIIRFP  157 (366)
T ss_dssp             CTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEES-SSSBCTTS--------------CBCCCSSBSEEEEEGGGCEECC
T ss_pred             CCCCEEEEcCCcCCCCCChhhhCcCcccCCccccc-ccccccCC--------------CcCCCccccEEEEchhhEEECC
Confidence            99999987654 57999999999999999654321 11111111              1123599999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCC-CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVE-VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE  249 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~  249 (388)
                      +++++++||++++++.|||+++. ..++. +|++|||+|+|++|++++|+|+.+|+ +|+++++++++.+.++ ++|+++
T Consensus       158 ~~ls~~~aa~l~~~~~ta~~al~-~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lGa~~  235 (366)
T 1yqd_A          158 DNMPLDGGAPLLCAGITVYSPLK-YFGLDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFGADS  235 (366)
T ss_dssp             TTSCTTTTGGGGTHHHHHHHHHH-HTTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSCCSE
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHH-hcCcCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCce
Confidence            99999999999999999999764 46788 99999999999999999999999999 8999999999998877 899999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      ++|+++   .   +.+.+.+ +++|+|||++|....++.++++++++ |+++.+|...  ....++...++.+++++.|+
T Consensus       236 v~~~~~---~---~~~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~g~~~--~~~~~~~~~~~~~~~~i~g~  305 (366)
T 1yqd_A          236 FLVSRD---Q---EQMQAAA-GTLDGIIDTVSAVHPLLPLFGLLKSH-GKLILVGAPE--KPLELPAFSLIAGRKIVAGS  305 (366)
T ss_dssp             EEETTC---H---HHHHHTT-TCEEEEEECCSSCCCSHHHHHHEEEE-EEEEECCCCS--SCEEECHHHHHTTTCEEEEC
T ss_pred             EEeccC---H---HHHHHhh-CCCCEEEECCCcHHHHHHHHHHHhcC-CEEEEEccCC--CCCCcCHHHHHhCCcEEEEe
Confidence            999876   3   3455554 38999999999875588999999997 9999999743  34567877888899999998


Q ss_pred             eecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          330 LFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      +...   .++++++++++++|++.+.  + ++|||+++++|++.++++.. +|+||+++
T Consensus       306 ~~~~---~~~~~~~~~l~~~g~l~~~--~-~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  358 (366)
T 1yqd_A          306 GIGG---MKETQEMIDFAAKHNITAD--I-EVISTDYLNTAMERLAKNDVRYRFVIDVG  358 (366)
T ss_dssp             CSCC---HHHHHHHHHHHHHTTCCCC--E-EEECGGGHHHHHHHHHTTCCSSEEEECHH
T ss_pred             cCCC---HHHHHHHHHHHHcCCCCCc--e-EEEcHHHHHHHHHHHHcCCcceEEEEEcc
Confidence            6432   3578999999999987664  4 79999999999999988765 59999764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=100.00  E-value=1.5e-53  Score=401.47  Aligned_cols=317  Identities=21%  Similarity=0.263  Sum_probs=280.5

Q ss_pred             CCCcceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           12 GKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        12 ~~~~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      ++|.+|||+++.+++.+  ++++++|.|+|++|||||||.+++||++|++++.|.++ .++|.++|||++|+|+++|++|
T Consensus         4 ~~p~~mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~-~~~P~i~G~e~~G~V~~vG~~v   82 (334)
T 3qwb_A            4 TIPEQQKVILIDEIGGYDVIKYEDYPVPSISEEELLIKNKYTGVNYIESYFRKGIYP-CEKPYVLGREASGTVVAKGKGV   82 (334)
T ss_dssp             -CCSEEEEEEESSSSSGGGEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHHTSSC-CCSSEECCSEEEEEEEEECTTC
T ss_pred             CCchheEEEEEecCCCCceeEEEeccCCCCCCCEEEEEEEEEecCHHHHHHHCCCCC-CCCCCccccceEEEEEEECCCC
Confidence            46788999999999876  89999999999999999999999999999999999876 3579999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEee-cCceE
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IAHVV  168 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~-~~~~~  168 (388)
                      ++|++||||+..                                                  ..|+|+||+.++ .+.++
T Consensus        83 ~~~~~GdrV~~~--------------------------------------------------~~G~~aey~~v~~~~~~~  112 (334)
T 3qwb_A           83 TNFEVGDQVAYI--------------------------------------------------SNSTFAQYSKISSQGPVM  112 (334)
T ss_dssp             CSCCTTCEEEEE--------------------------------------------------CSSCSBSEEEEETTSSEE
T ss_pred             CCCCCCCEEEEe--------------------------------------------------eCCcceEEEEecCcceEE
Confidence            999999999742                                                  124999999999 99999


Q ss_pred             EcCCCCCccc---cccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          169 KVDPTVPPNR---ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       169 ~lP~~~~~~~---aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      ++|+++++++   ||++++.+.|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++++++++
T Consensus       113 ~~P~~~~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          113 KLPKGTSDEELKLYAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             ECCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             ECCCCCCHHHhhhhhhhhhHHHHHHHHHHHhccCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            9999999999   88889999999998877789999999999995 9999999999999999 99999999999999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcC
Q 016507          245 FGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSG  323 (388)
Q Consensus       245 lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~  323 (388)
                      +|+++++|+++   .++.+.+++.+++ ++|++|||+|... +..++++++++ |+++.+|... .....++...++.++
T Consensus       192 ~ga~~~~~~~~---~~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~  265 (334)
T 3qwb_A          192 YGAEYLINASK---EDILRQVLKFTNGKGVDASFDSVGKDT-FEISLAALKRK-GVFVSFGNAS-GLIPPFSITRLSPKN  265 (334)
T ss_dssp             TTCSEEEETTT---SCHHHHHHHHTTTSCEEEEEECCGGGG-HHHHHHHEEEE-EEEEECCCTT-CCCCCBCGGGGTTTT
T ss_pred             cCCcEEEeCCC---chHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhccC-CEEEEEcCCC-CCCCCcchhhhhhCc
Confidence            99999999988   7899999999887 9999999999865 99999999997 9999999753 233467777788899


Q ss_pred             cEEEEeeecCCCc-cC----cHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeCC
Q 016507          324 KILMGSLFGGLKA-KS----DIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       324 ~~i~g~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                      +++.++++..+.. .+    .++++++++.+|++++.  ++++||++++++|++.+.++.. +|+||++.+
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~q  334 (334)
T 3qwb_A          266 ITLVRPQLYGYIADPEEWKYYSDEFFGLVNSKKLNIK--IYKTYPLRDYRTAAADIESRKTVGKLVLEIPQ  334 (334)
T ss_dssp             CEEECCCGGGGSCSHHHHHHHHHHHHHHHHTTSSCCC--EEEEEEGGGHHHHHHHHHTTCCCBEEEEECCC
T ss_pred             eEEEEEEeccccCCHHHHHHHHHHHHHHHHCCCccCc--eeeEEcHHHHHHHHHHHHhCCCceEEEEecCC
Confidence            9999877655432 12    34689999999977765  8899999999999999998775 599999864

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=100.00  E-value=4.8e-54  Score=420.93  Aligned_cols=346  Identities=18%  Similarity=0.172  Sum_probs=293.5

Q ss_pred             CCCCcceeeeeecCC---------------CCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccC-----------
Q 016507           11 AGKPIQCRAAIATAP---------------GEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK-----------   64 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~---------------~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~-----------   64 (388)
                      .+.|.+|||+++.++               +++++++++|.|+|+++||||||.+++||++|++...+.           
T Consensus        25 ~~iP~tmkA~v~~~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVkV~a~gic~sD~~~~~~~~~~~~~~~~~~  104 (456)
T 3krt_A           25 LPLPESYRAITVHKDETEMFAGLETRDKDPRKSIHLDDVPVPELGPGEALVAVMASSVNYNSVHTSIFEPLSTFGFLERY  104 (456)
T ss_dssp             SCCCSCEEEEEEEGGGTTTTTTCCGGGCCHHHHCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTCSSCSHHHHHHH
T ss_pred             CCCCcceEEEEEeccccccccccccccCCCCCCcEEEEccCCCCCCCeEEEEEEEEEecchhhhhhhcCcccchhhhhhc
Confidence            357889999999987               234999999999999999999999999999998764321           


Q ss_pred             --CC----CCCCC-cccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCc
Q 016507           65 --DF----PAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS  137 (388)
Q Consensus        65 --~~----~~~~p-~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~  137 (388)
                        ..    ...+| .++|||++|+|+++|++|++|++||||++.+ ..|..|..|..+..+.|.+...   +|+...   
T Consensus       105 g~~~~~~~~~~~P~~v~GhE~~G~Vv~vG~~v~~~~vGdrV~~~~-~~c~~~~~~~~~~~~~c~~~~~---~G~~~~---  177 (456)
T 3krt_A          105 GRVSDLAKRHDLPYHVIGSDLAGVVLRTGPGVNAWQAGDEVVAHC-LSVELESSDGHNDTMLDPEQRI---WGFETN---  177 (456)
T ss_dssp             HTSCHHHHTTCCSEEECCSCCEEEEEEECTTCCSCCTTCEEEECC-EECCCCSGGGTTSGGGCTTCEE---TTTTSS---
T ss_pred             cccccccccCCCCcccccceeEEEEEEECCCCCCCCCCCEEEEeC-CcccccccccccccccCccccc---cccCCC---
Confidence              10    12457 6999999999999999999999999998854 3688899999999999987765   555432   


Q ss_pred             cccccCCceecccccccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHh--cCCCCCCEEEEEcc-chhH
Q 016507          138 RFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT--ANVEVGSTVVIFGL-GSIG  214 (388)
Q Consensus       138 ~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~--~~~~~~~~VlI~Ga-g~vG  214 (388)
                                     .|+|+||++++.++++++|+++++++||++++++.|||+++...  +++++|++|||+|+ |++|
T Consensus       178 ---------------~G~~aey~~v~~~~~~~~P~~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG  242 (456)
T 3krt_A          178 ---------------FGGLAEIALVKSNQLMPKPDHLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLG  242 (456)
T ss_dssp             ---------------SCSSBSEEEEEGGGEEECCTTSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHH
T ss_pred             ---------------CCcccceEEechHHeeECCCCCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHH
Confidence                           14999999999999999999999999999999999999987654  78999999999998 9999


Q ss_pred             HHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCC--------------ccHHHHHHhhcCC-CccEEEEc
Q 016507          215 LAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD--------------KSVSQIIIDMTDG-GADYCFEC  279 (388)
Q Consensus       215 ~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~--------------~~~~~~i~~~~~g-~~dvvid~  279 (388)
                      ++++|+|+.+|+ +|++++++++++++++++|+++++|+.+.+.              ..+.+.+++++++ ++|+||||
T Consensus       243 ~~avqlak~~Ga-~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~  321 (456)
T 3krt_A          243 SYATQFALAGGA-NPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEH  321 (456)
T ss_dssp             HHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHHHHHHTSCCEEEEEEC
T ss_pred             HHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHHHHHhCCCCCcEEEEc
Confidence            999999999999 8888889999999999999999999876211              1245788888887 99999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCccee
Q 016507          280 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVT  359 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  359 (388)
                      +|+. .+..++++++++ |+++.+|... .....++...++.+.+++.|++...+   .++.++++++++|++.  ++++
T Consensus       322 ~G~~-~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~i~g~~~~~~---~~~~~~~~l~~~g~l~--~~i~  393 (456)
T 3krt_A          322 PGRE-TFGASVFVTRKG-GTITTCASTS-GYMHEYDNRYLWMSLKRIIGSHFANY---REAWEANRLIAKGRIH--PTLS  393 (456)
T ss_dssp             SCHH-HHHHHHHHEEEE-EEEEESCCTT-CSEEEEEHHHHHHTTCEEEECCSCCH---HHHHHHHHHHHTTSSC--CCEE
T ss_pred             CCch-hHHHHHHHhhCC-cEEEEEecCC-CcccccCHHHHHhcCeEEEEeccCCH---HHHHHHHHHHHcCCcc--ccee
Confidence            9995 499999999997 9999999753 34556777788888999999875443   4677899999999764  5689


Q ss_pred             eeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          360 HEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       360 ~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      ++|||+++++|++.+.++.. +|+||.+.
T Consensus       394 ~~~~l~~~~eA~~~l~~~~~~GKvvv~~~  422 (456)
T 3krt_A          394 KVYSLEDTGQAAYDVHRNLHQGKVGVLCL  422 (456)
T ss_dssp             EEEEGGGHHHHHHHHHTTCSSSEEEEESS
T ss_pred             EEEcHHHHHHHHHHHHhCCCCCcEEEEeC
Confidence            99999999999999988765 59988753

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=100.00  E-value=9.4e-54  Score=405.62  Aligned_cols=318  Identities=20%  Similarity=0.236  Sum_probs=279.9

Q ss_pred             CCCcceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCC
Q 016507           12 GKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        12 ~~~~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      ++|.+|||+++.+++.+  ++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus        24 ~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~  103 (353)
T 4dup_A           24 SLPQEMRFVDLKSFGGPDVMVIGKRPLPVAGEGEVLVRAEAIGVNRPDIAQRQGSYPPPKDASPILGLELSGEIVGVGPG  103 (353)
T ss_dssp             CCCSSEEEEEESSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTSSCCCTTSCSSSCCEEEEEEEEECTT
T ss_pred             CCChheeEEEEccCCCccceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCccccccEEEEEEECCC
Confidence            47788999999998765  899999999999999999999999999999999998764 357899999999999999999


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      |++|++||||+..                              ..                   .|+|+||+.+|.++++
T Consensus       104 v~~~~vGdrV~~~------------------------------~~-------------------~G~~aey~~v~~~~~~  134 (353)
T 4dup_A          104 VSGYAVGDKVCGL------------------------------AN-------------------GGAYAEYCLLPAGQIL  134 (353)
T ss_dssp             CCSCCTTCEEEEE------------------------------CS-------------------SCCSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEEe------------------------------cC-------------------CCceeeEEEEcHHHcE
Confidence            9999999999642                              11                   2499999999999999


Q ss_pred             EcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       169 ~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      ++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+
T Consensus       135 ~~P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa  213 (353)
T 4dup_A          135 PFPKGYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGA  213 (353)
T ss_dssp             ECCTTCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTC
T ss_pred             eCCCCCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCC
Confidence            999999999999999999999998888899999999999965 9999999999999999 89999999999999999999


Q ss_pred             cEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEE
Q 016507          248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  327 (388)
Q Consensus       248 ~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  327 (388)
                      ++++|+++   .++.+.+++.+++++|++|||+|+.. +..++++++++ |+++.+|.........++...++.+++++.
T Consensus       214 ~~~~~~~~---~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~  288 (353)
T 4dup_A          214 KRGINYRS---EDFAAVIKAETGQGVDIILDMIGAAY-FERNIASLAKD-GCLSIIAFLGGAVAEKVNLSPIMVKRLTVT  288 (353)
T ss_dssp             SEEEETTT---SCHHHHHHHHHSSCEEEEEESCCGGG-HHHHHHTEEEE-EEEEECCCTTCSEEEEEECHHHHHTTCEEE
T ss_pred             CEEEeCCc---hHHHHHHHHHhCCCceEEEECCCHHH-HHHHHHHhccC-CEEEEEEecCCCcccCCCHHHHHhcCceEE
Confidence            99999988   78899999988449999999999976 89999999997 999999975433222277778888999999


Q ss_pred             EeeecCCCcc-------CcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          328 GSLFGGLKAK-------SDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       328 g~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      |++...+...       +.++++++++++|++  +++++++|+|+++++|++.++++.. +|+||++
T Consensus       289 g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~l~~~~~~gKvvl~~  353 (353)
T 4dup_A          289 GSTMRPRTAEEKRAIRDDLLSEVWPLLEAGTV--APVIHKVFAFEDVADAHRLLEEGSHVGKVMLTV  353 (353)
T ss_dssp             ECCSTTSCHHHHHHHHHHHHHHTHHHHHHTSS--CCCEEEEEEGGGHHHHHHHHHHTCCSSEEEEEC
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHHHCCCc--cCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            9976654321       117789999999965  5678999999999999999988775 5999975

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=100.00  E-value=7.9e-55  Score=415.11  Aligned_cols=331  Identities=18%  Similarity=0.239  Sum_probs=280.8

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCC-CeEEEEEceeccCccccccccc--CCCCCCC---CcccccceeEEEEEecCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNS-HEVRVRIICTSLCHSDVTFWKM--KDFPAVF---PRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~-~eVlVkv~~~~i~~~D~~~~~g--~~~~~~~---p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      |||+++.+++++++++++|.|+|++ +||||||.|++||++|++++.|  .++...+   |.++|||++|+|++  ++ +
T Consensus         1 MkA~~~~~~g~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~--~~-~   77 (366)
T 2cdc_A            1 MKAIIVKPPNAGVQVKDVDEKKLDSYGKIKIRTIYNGICGADREIVNGKLTLSTLPKGKDFLVLGHEAIGVVEE--SY-H   77 (366)
T ss_dssp             CEEEEECTTSCCCEEEECCGGGSCCCSSEEEEEEEEEECHHHHHHHTTCC-------CCSCEECCSEEEEEECS--CC-S
T ss_pred             CeEEEEeCCCCceEEEECcCCCCCCCCEEEEEEEEEeeccccHHHHcCCCCCCCCCcCCCCCcCCcceEEEEEe--CC-C
Confidence            7999999998779999999999999 9999999999999999999998  5543456   99999999999999  77 8


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCC--CCC-CCCCccccccCCceecccccccceeeeEEeecCce
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP--WMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHV  167 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~--g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~  167 (388)
                      +|++||||++.+..+|+.|.+|++|++++|.+...   +  |+. .+                   |+|+||++++++++
T Consensus        78 ~~~~GDrV~~~~~~~cg~C~~C~~g~~~~C~~~~~---~~~g~~~~~-------------------G~~aey~~v~~~~~  135 (366)
T 2cdc_A           78 GFSQGDLVMPVNRRGCGICRNCLVGRPDFCETGEF---GEAGIHKMD-------------------GFMREWWYDDPKYL  135 (366)
T ss_dssp             SCCTTCEEEECSEECCSSSHHHHTTCGGGCSSSCC---EEETTBEEC-------------------CSCBSEEEECGGGE
T ss_pred             CCCCCCEEEEcCCCCCCCChhhhCcCcccCCCCCc---ccCCccCCC-------------------CceeEEEEechHHe
Confidence            99999999999999999999999999999987553   2  332 23                   49999999999999


Q ss_pred             EEcCCCCCccccccccchhhhhHHHHH--H--hcCCC--C-------CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC
Q 016507          168 VKVDPTVPPNRACLLSCGVSTGVGAAW--R--TANVE--V-------GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       168 ~~lP~~~~~~~aa~~~~~~~ta~~~l~--~--~~~~~--~-------~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      +++|++++ ++|| ++.++.|||+++.  +  .++++  +       |++|||+|+|++|++++|+|+.+|+ +|+++++
T Consensus       136 ~~iP~~l~-~~Aa-l~~~~~ta~~al~~~~~~~~~~~~~~~~~~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~  212 (366)
T 2cdc_A          136 VKIPKSIE-DIGI-LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANR  212 (366)
T ss_dssp             EEECGGGT-TTGG-GHHHHHHHHHHHHHHHHHGGGSSCCSCTTSSSTTCEEEEESCHHHHHHHHHHHHHHTC-EEEEEES
T ss_pred             EECcCCcc-hhhh-hcCcHHHHHHHHHhhhhcccCccccccccccCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeC
Confidence            99999999 7775 6679999999876  4  67888  8       9999999999999999999999999 9999999


Q ss_pred             Cc---hHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHH-HHHHHHhhcCCceEEEEccCCCCC
Q 016507          235 IS---EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLV-QEAYACCRKGWGKTIVLGVDQPGS  310 (388)
Q Consensus       235 ~~---~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~-~~~~~~l~~~~G~~v~~g~~~~~~  310 (388)
                      ++   ++.++++++|++++ | ++    ++.+.+.+ +++++|+|||++|....+ +.++++++++ |+++.+|.... .
T Consensus       213 ~~~~~~~~~~~~~~ga~~v-~-~~----~~~~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~~~~-~  283 (366)
T 2cdc_A          213 REPTEVEQTVIEETKTNYY-N-SS----NGYDKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRN-GVLGLFGFSTS-G  283 (366)
T ss_dssp             SCCCHHHHHHHHHHTCEEE-E-CT----TCSHHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEE-EEEEECSCCCS-C
T ss_pred             CccchHHHHHHHHhCCcee-c-hH----HHHHHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcC-CEEEEEecCCC-C
Confidence            98   89999999999988 7 43    44556665 446899999999997657 9999999997 99999997532 2


Q ss_pred             ccccCHHH---HHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCC----CCcceeeeEecchHHHHHHH--HhcCceeE
Q 016507          311 QLSLSSFE---VLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELE----LDKFVTHEMKFEEINSAFDL--LIKGKCLR  381 (388)
Q Consensus       311 ~~~~~~~~---~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~l~~~~~A~~~--~~~~~~~k  381 (388)
                      ...++...   ++.+++++.|+...   ..++++++++++++|++.    +.++++++|||+++++|++.  ++.+..+|
T Consensus       284 ~~~~~~~~~~~~~~~~~~i~g~~~~---~~~~~~~~~~l~~~g~i~~~~~~~~~i~~~~~l~~~~~A~~~l~~~~~~~gK  360 (366)
T 2cdc_A          284 SVPLDYKTLQEIVHTNKTIIGLVNG---QKPHFQQAVVHLASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIK  360 (366)
T ss_dssp             EEEEEHHHHHHHHHTTCEEEECCCC---CHHHHHHHHHHHHHHHHHSHHHHTTSEEEEEETTCHHHHHHHHHCCCTTCCE
T ss_pred             ccccChhhhHHHHhcCcEEEEecCC---CHHHHHHHHHHHHcCCCCcccchhhcEEEEEcHHHHHHHHHHHhhhcCCceE
Confidence            35677777   78899999998543   246789999999999866    77889999999999999998  56445569


Q ss_pred             EEEeeC
Q 016507          382 CVIWMG  387 (388)
Q Consensus       382 vvv~~~  387 (388)
                      +||+++
T Consensus       361 vvi~~~  366 (366)
T 2cdc_A          361 IRILWE  366 (366)
T ss_dssp             EEEECC
T ss_pred             EEEecC
Confidence            999875

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=100.00  E-value=1.3e-53  Score=417.36  Aligned_cols=346  Identities=17%  Similarity=0.164  Sum_probs=290.1

Q ss_pred             CCCCcceeeeeecCCC-------------CCeEEEEeecCCCCCCeEEEEEceeccCcccccccc---------------
Q 016507           11 AGKPIQCRAAIATAPG-------------EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---------------   62 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~-------------~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~---------------   62 (388)
                      ...|.+|||+++.+++             ++++++++|.|+|+++||||||.|++||++|++...               
T Consensus        19 ~~~p~tmkA~v~~~~~~~~~~~~~~~~~~~~l~~~e~p~P~~~~~eVlVrV~a~gic~sD~~~~~~~~~~~~~~~~~~~~   98 (447)
T 4a0s_A           19 APVPDTYLALHLRAEDADMFKGVADKDVRKSLRLGEVPMPELAPDEVLVAVMASSINYNTVWSAMFEPIPTFHFLKQNAR   98 (447)
T ss_dssp             SCCCSEEEEEEEEGGGTTTTTTCSSCCHHHHCEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSCHHHHHHHHHT
T ss_pred             cCCChhheeeeeeccccccccccccCCCCCCceEEeccCCCCCCCeEEEEEEEEEECcHHhhhhccCcccchhhhhhhcc
Confidence            4578999999999987             249999999999999999999999999999975321               


Q ss_pred             -cCCC-CCCCC-cccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccc
Q 016507           63 -MKDF-PAVFP-RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRF  139 (388)
Q Consensus        63 -g~~~-~~~~p-~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~  139 (388)
                       |.+. ...+| .++|||++|+|+++|++|++|++||||++.+...|+.|. |..+..+.|.+...   +|+..+     
T Consensus        99 ~g~~~~~~~~P~~v~GhE~~G~V~~vG~~V~~~~vGDrV~~~~~~~~~~~~-~~~~~~~~c~~~~~---~G~~~~-----  169 (447)
T 4a0s_A           99 QGGWATRHDQPYHVLGSDCSGVVVRTGIGVRRWKPGDHVIVHPAHVDEQEP-ATHGDGMLGTEQRA---WGFETN-----  169 (447)
T ss_dssp             TCGGGGGGCCSEEECCSCEEEEEEEECTTCCSCCTTCEEEECSEECCTTSG-GGGTCTTCSTTCEE---TTTTSS-----
T ss_pred             cCccccccCCCCcccccceeEEEEEECCCCCCCCCCCEEEEecCcCcCccc-cccccccccccccc---ccccCC-----
Confidence             1111 12456 699999999999999999999999999998888777665 55577899987665   555432     


Q ss_pred             cccCCceecccccccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHH--hcCCCCCCEEEEEcc-chhHHH
Q 016507          140 KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR--TANVEVGSTVVIFGL-GSIGLA  216 (388)
Q Consensus       140 ~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~--~~~~~~~~~VlI~Ga-g~vG~~  216 (388)
                                   .|+|+||++++.++++++|+++++++||++++++.|||+++..  .+++++|++|||+|+ |++|++
T Consensus       170 -------------~G~~aey~~v~~~~~~~iP~~ls~~~aA~l~~~~~tA~~al~~~~~~~~~~g~~VlV~GasG~iG~~  236 (447)
T 4a0s_A          170 -------------FGGLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASGGLGSY  236 (447)
T ss_dssp             -------------SCSSBSEEEEEGGGEEECCTTSCHHHHHTSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHH
T ss_pred             -------------CCceeeeeecCHHHcEECCCCCCHHHHHHhHHHHHHHHHHHHhhhccCCCCCCEEEEECCCCHHHHH
Confidence                         1499999999999999999999999999999999999998764  388999999999998 999999


Q ss_pred             HHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCC---------------ccHHHHHHhhcCCCccEEEEccC
Q 016507          217 VAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD---------------KSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       217 ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~---------------~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      ++|+|+..|+ +|++++++++++++++++|+++++|+.+.+.               ..+.+.+++.+++++|+|||++|
T Consensus       237 a~qla~~~Ga-~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~g~Dvvid~~G  315 (447)
T 4a0s_A          237 AIQFVKNGGG-IPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTG  315 (447)
T ss_dssp             HHHHHHHTTC-EEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHHHHHHSSCCSEEEECSC
T ss_pred             HHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHHHHHhCCCceEEEECCC
Confidence            9999999999 8999989999999999999999998654110               11367788888449999999999


Q ss_pred             CHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeee
Q 016507          282 LASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHE  361 (388)
Q Consensus       282 ~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  361 (388)
                      ... +..++++++++ |+++.+|... .....++...++.+++++.|++...   .+++.++++++++|++  +++++++
T Consensus       316 ~~~-~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~i~g~~~~~---~~~~~~~~~l~~~g~l--~~~i~~~  387 (447)
T 4a0s_A          316 RVT-FGLSVIVARRG-GTVVTCGSSS-GYLHTFDNRYLWMKLKKIVGSHGAN---HEEQQATNRLFESGAV--VPAMSAV  387 (447)
T ss_dssp             HHH-HHHHHHHSCTT-CEEEESCCTT-CSEEEEEHHHHHHTTCEEEECCSCC---HHHHHHHHHHHHTTSS--CCCEEEE
T ss_pred             chH-HHHHHHHHhcC-CEEEEEecCC-CcccccCHHHHHhCCCEEEecCCCC---HHHHHHHHHHHHcCCc--ccceeEE
Confidence            865 89999999997 9999999753 3445677778888999999986443   3567899999999976  4578999


Q ss_pred             EecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          362 MKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       362 ~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      |||+++++|++.+.++.. +|+||.+.
T Consensus       388 ~~l~~~~~A~~~~~~~~~~GKvvv~~~  414 (447)
T 4a0s_A          388 YPLAEAAEACRVVQTSRQVGKVAVLCM  414 (447)
T ss_dssp             EEGGGHHHHHHHHHTTCCSSEEEEESS
T ss_pred             EcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            999999999999988765 59988763

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=100.00  E-value=6.5e-53  Score=402.36  Aligned_cols=325  Identities=19%  Similarity=0.199  Sum_probs=270.6

Q ss_pred             CCcceeeeeecCCCCCeEEE-EeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCC
Q 016507           13 KPIQCRAAIATAPGEPLVID-EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~-~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      +|.+|||+++.+++. ++++ ++|.|+|+++||||||.+++||++|++++.+.   ..+|.++|||++|+|+++|++|++
T Consensus         8 ~p~~mkA~v~~~~~~-l~~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~---~~~p~v~G~e~~G~V~~vG~~v~~   83 (371)
T 3gqv_A            8 PPPQQTALTVNDHDE-VTVWNAAPCPMLPRDQVYVRVEAVAINPSDTSMRGQF---ATPWAFLGTDYAGTVVAVGSDVTH   83 (371)
T ss_dssp             CCSCEEEEEECTTSC-EEEEEEECCCCCCTTSEEEEEEEEECCGGGGC--------CCTTSCCCSEEEEEEEEECTTCCS
T ss_pred             CchhceeEEEcCCCc-eEEeccCCCCCCCCCEEEEEEEEEEcCHHHHHHhhcC---CCCCccCccccEEEEEEeCCCCCC
Confidence            577899999999976 9998 99999999999999999999999999998773   246899999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      |++||||+.       .|..|..+.               ..+                   |+|+||+.++.++++++|
T Consensus        84 ~~~GdrV~~-------~~~~~~~~~---------------~~~-------------------G~~aey~~v~~~~~~~~P  122 (371)
T 3gqv_A           84 IQVGDRVYG-------AQNEMCPRT---------------PDQ-------------------GAFSQYTVTRGRVWAKIP  122 (371)
T ss_dssp             CCTTCEEEE-------ECCTTCTTC---------------TTC-------------------CSSBSEEECCTTCEEECC
T ss_pred             CCCCCEEEE-------eccCCCCCC---------------CCC-------------------CcCcCeEEEchhheEECC
Confidence            999999964       344443321               122                   499999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHh-cCC-----------CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRT-ANV-----------EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~-~~~-----------~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~  238 (388)
                      +++++++||++++++.|||+++.+. .++           ++|++|||+|+ |++|++++|+|+.+|+ +|+++. +++|
T Consensus       123 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~  200 (371)
T 3gqv_A          123 KGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHN  200 (371)
T ss_dssp             TTCCHHHHHTSHHHHHHHHHHHHHHTCCCCCSSCSSCCCCSSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGG
T ss_pred             CCCCHHHHhhhhhhHHHHHHHHHhhccCCCCCccccccccCCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHH
Confidence            9999999999999999999988777 553           89999999998 9999999999999999 899886 7899


Q ss_pred             HHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHh-hcCCceEEEEccCCC----CCccc
Q 016507          239 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC-RKGWGKTIVLGVDQP----GSQLS  313 (388)
Q Consensus       239 ~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l-~~~~G~~v~~g~~~~----~~~~~  313 (388)
                      +++++++|+++++|+++   .++.+.+++++++++|+||||+|+...+..+++++ +++ |+++.+|....    .....
T Consensus       201 ~~~~~~lGa~~vi~~~~---~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~-G~iv~~g~~~~~~~~~~~~~  276 (371)
T 3gqv_A          201 FDLAKSRGAEEVFDYRA---PNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAG-GHYVSLNPFPEHAATRKMVT  276 (371)
T ss_dssp             HHHHHHTTCSEEEETTS---TTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTC-EEEEESSCCCC---CCSCEE
T ss_pred             HHHHHHcCCcEEEECCC---chHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCC-CEEEEEecCccccccccccc
Confidence            99999999999999988   78999999999889999999999987799999999 587 99999996432    11122


Q ss_pred             --cC-HHHHHhcCcEEEEeeecCCCc------cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-e-EE
Q 016507          314 --LS-SFEVLHSGKILMGSLFGGLKA------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-L-RC  382 (388)
Q Consensus       314 --~~-~~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~-kv  382 (388)
                        +. ...++.+++++.|++......      .+.++++++++++|++.+..+++++|||+++++|++.+.+++. + |+
T Consensus       277 ~~~~~~~~~~~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~~~A~~~l~~g~~~Gkkv  356 (371)
T 3gqv_A          277 TDWTLGPTIFGEGSTWPAPYGRPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHIKQGMELVRKGELSGEKL  356 (371)
T ss_dssp             EEECCGGGGGTSCBSCSTTTCBCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHHHHHHHHHHTTCCSSCEE
T ss_pred             eeeeeeeeeccccccccccccccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHHHHHHHHHHcCCCceEEE
Confidence              21 234667888888774332211      1234588899999999999888889999999999999998765 4 78


Q ss_pred             EEeeCC
Q 016507          383 VIWMGE  388 (388)
Q Consensus       383 vv~~~~  388 (388)
                      |+++++
T Consensus       357 vv~~~~  362 (371)
T 3gqv_A          357 VVRLEG  362 (371)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            887764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=100.00  E-value=3.4e-53  Score=399.96  Aligned_cols=317  Identities=19%  Similarity=0.242  Sum_probs=274.2

Q ss_pred             CCcceeeeeecCCCCC---eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCC
Q 016507           13 KPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      |+|+|||+++.++++|   ++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++
T Consensus         1 M~~~mka~~~~~~g~p~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~vG~~   80 (340)
T 3gms_A            1 MSLHGKLIQFHKFGNPKDVLQVEYKNIEPLKDNEVFVRMLVRPINPSDLIPITGAYAHRIPLPNIPGYEGVGIVENVGAF   80 (340)
T ss_dssp             -CCEEEEEEESSCSCHHHHEEEEEEECCCCCTTEEEEEEEEEECCHHHHGGGGTTTTTTSCSSBCCCSCCEEEEEEECTT
T ss_pred             CCcccEEEEEecCCCchheEEEEecCCCCCCCCEEEEEEEEecCCHHHHHHhcCCCCCCCCCCCcCCcceEEEEEEeCCC
Confidence            3478999999999987   899999999999999999999999999999999998754 578999999999999999999


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      |++|++||||+..                              ..                   .|+|+||+.+|.++++
T Consensus        81 v~~~~vGdrV~~~------------------------------~~-------------------~G~~aey~~v~~~~~~  111 (340)
T 3gms_A           81 VSRELIGKRVLPL------------------------------RG-------------------EGTWQEYVKTSADFVV  111 (340)
T ss_dssp             SCGGGTTCEEEEC------------------------------SS-------------------SCSSBSEEEEEGGGEE
T ss_pred             CCCCCCCCEEEec------------------------------CC-------------------CccceeEEEcCHHHeE
Confidence            9999999999732                              11                   2499999999999999


Q ss_pred             EcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       169 ~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      ++|+++++++||++++.++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+
T Consensus       112 ~vP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga  190 (340)
T 3gms_A          112 PIPDSIDDFTAAQMYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGA  190 (340)
T ss_dssp             ECCTTSCHHHHTTSSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTC
T ss_pred             ECCCCCCHHHHhhhcchHHHHHHHHHHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCC
Confidence            999999999999999999999999888999999999999998 6999999999999999 99999999999999999999


Q ss_pred             cEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHh-cCcE
Q 016507          248 TEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLH-SGKI  325 (388)
Q Consensus       248 ~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~  325 (388)
                      ++++|+++   .++.+.+++++++ ++|++|||+|+.. ...++++++++ |+++.+|.... .  .++...+.. ..+.
T Consensus       191 ~~~~~~~~---~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~-~--~~~~~~~~~~~~~~  262 (340)
T 3gms_A          191 AYVIDTST---APLYETVMELTNGIGADAAIDSIGGPD-GNELAFSLRPN-GHFLTIGLLSG-I--QVNWAEIVTKAKVH  262 (340)
T ss_dssp             SEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCHHH-HHHHHHTEEEE-EEEEECCCTTS-C--CCCHHHHHHTSCCE
T ss_pred             cEEEeCCc---ccHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHHhcCC-CEEEEEeecCC-C--CCCHHHhhhcccce
Confidence            99999887   7899999999988 9999999999987 66777999997 99999997532 2  344444432 4555


Q ss_pred             EEEeeecCC-------CccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCc-e-eEEEEeeCC
Q 016507          326 LMGSLFGGL-------KAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGK-C-LRCVIWMGE  388 (388)
Q Consensus       326 i~g~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~-~-~kvvv~~~~  388 (388)
                      +..+.+..+       ...++++++++++++|++.+.. ++++|||+++++|++.+.+++ . +|+||++.|
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~l~~~~~A~~~~~~~~~~~GKvvl~~~~  333 (340)
T 3gms_A          263 ANIFHLRHWNDEVSPYKWQETFRHLIRLVENEQLRFMK-VHSTYELADVKAAVDVVQSAEKTKGKVFLTSYE  333 (340)
T ss_dssp             EEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCC-EEEEEEGGGHHHHHHHHHCTTCCSSEEEEECC-
T ss_pred             EEEEEehhhhhhcCHHHHHHHHHHHHHHHHcCCCcccc-ccEEEeHHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            555443221       1135788999999999888754 689999999999999999886 4 799998754

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=100.00  E-value=4.4e-53  Score=399.31  Aligned_cols=316  Identities=21%  Similarity=0.252  Sum_probs=269.8

Q ss_pred             CCCCCcceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEec
Q 016507           10 TAGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVG   86 (388)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG   86 (388)
                      +..+|.+|||+++.+++.+  ++++++|.|+|++|||||||.|++||++|++.+.|.++. ..+|.++|||++|+|+++|
T Consensus        15 ~~~~p~~MkA~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~vG   94 (342)
T 4eye_A           15 QTQGPGSMKAIQAQSLSGPEGLVYTDVETPGAGPNVVVVDVKAAGVCFPDYLMTKGEYQLKMEPPFVPGIETAGVVRSAP   94 (342)
T ss_dssp             ---CCCEEEEEEECSSSGGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSSSCCCSSBCCCSEEEEEEEECC
T ss_pred             cccCCcceEEEEEecCCCCceeEEEeCCCCCCCCCEEEEEEEEEecCHHHHHHhcCCCCCCCCCCCccceeEEEEEEEEC
Confidence            3557899999999998766  999999999999999999999999999999999997753 4689999999999999999


Q ss_pred             CCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCc
Q 016507           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (388)
Q Consensus        87 ~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~  166 (388)
                      ++++ |++||||+...                              .                   .|+|+||+.++.++
T Consensus        95 ~~v~-~~vGDrV~~~~------------------------------~-------------------~G~~aey~~v~~~~  124 (342)
T 4eye_A           95 EGSG-IKPGDRVMAFN------------------------------F-------------------IGGYAERVAVAPSN  124 (342)
T ss_dssp             TTSS-CCTTCEEEEEC------------------------------S-------------------SCCSBSEEEECGGG
T ss_pred             CCCC-CCCCCEEEEec------------------------------C-------------------CCcceEEEEEcHHH
Confidence            9999 99999997531                              1                   24999999999999


Q ss_pred             eEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc
Q 016507          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (388)
Q Consensus       167 ~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l  245 (388)
                      ++++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++++++
T Consensus       125 ~~~iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~  203 (342)
T 4eye_A          125 ILPTPPQLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSV  203 (342)
T ss_dssp             EEECCTTSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH
T ss_pred             eEECCCCCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhc
Confidence            99999999999999999999999998878899999999999998 9999999999999999 999999999999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCc
Q 016507          246 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  324 (388)
Q Consensus       246 ga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  324 (388)
                      |+++++|++    .++.+.+++.+++ ++|++|||+|++. +..++++++++ |+++.+|.... ....++...++.+++
T Consensus       204 ga~~v~~~~----~~~~~~v~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~  276 (342)
T 4eye_A          204 GADIVLPLE----EGWAKAVREATGGAGVDMVVDPIGGPA-FDDAVRTLASE-GRLLVVGFAAG-GIPTIKVNRLLLRNA  276 (342)
T ss_dssp             TCSEEEESS----TTHHHHHHHHTTTSCEEEEEESCC--C-HHHHHHTEEEE-EEEEEC-----------CCCCGGGTTC
T ss_pred             CCcEEecCc----hhHHHHHHHHhCCCCceEEEECCchhH-HHHHHHhhcCC-CEEEEEEccCC-CCCccCHHHHhhcCC
Confidence            999999876    3688889999988 9999999999976 89999999997 99999997542 233455556778899


Q ss_pred             EEEEeeecCCC------ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          325 ILMGSLFGGLK------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       325 ~i~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ++.|++...+.      ..++++++++++++|   +.++++++|||+++++|++.+.++.. +|+||++
T Consensus       277 ~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g---l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~P  342 (342)
T 4eye_A          277 SLIGVAWGEFLRTHADYLYETQAGLEKLVAEG---MRPPVSARIPLSEGRQALQDFADGKVYGKMVLVP  342 (342)
T ss_dssp             EEEECCHHHHHHHCTTHHHHHHHHHHHHHHTT---CCCCEEEEEEGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             EEEEEehhhhhhcCHHHHHHHHHHHHHHHHcC---CCCCcceEEeHHHHHHHHHHHHhCCCCceEEEeC
Confidence            99998754331      124588899999999   55678999999999999999998876 4999874

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=100.00  E-value=5.1e-52  Score=392.77  Aligned_cols=314  Identities=20%  Similarity=0.211  Sum_probs=268.9

Q ss_pred             cceeeeeecCCC-----CCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           15 IQCRAAIATAPG-----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        15 ~~~ka~~~~~~~-----~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      |+|||+++++++     +.++++++|.|+|+++||||||.+++||++|++.+.|.  ...+|.++|||++|+|+++|++|
T Consensus         1 m~MkA~~~~~~G~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~--~~~~p~i~G~e~~G~V~~vG~~v   78 (346)
T 3fbg_A            1 MSLKAIGFEQPFKLSDGNLFKTFNLDIPEPKVHEILVKIQSISVNPVDTKQRLMD--VSKAPRVLGFDAIGVVESVGNEV   78 (346)
T ss_dssp             -CEEEEEBSSCCCGGGCCCCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHTTSC--CSSSCBCCCCCEEEEEEEECTTC
T ss_pred             CCcEEEEEEeccccCCCceeEeccccCCCCCCCEEEEEEEEEEcCHHHHHHHhCC--CCCCCcCcCCccEEEEEEeCCCC
Confidence            679999999876     34999999999999999999999999999999999886  34679999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      ++|++||||+...                           +...+                   |+|+||+.++.+++++
T Consensus        79 ~~~~~GdrV~~~~---------------------------~~~~~-------------------G~~aey~~v~~~~~~~  112 (346)
T 3fbg_A           79 TMFNQGDIVYYSG---------------------------SPDQN-------------------GSNAEYQLINERLVAK  112 (346)
T ss_dssp             CSCCTTCEEEECC---------------------------CTTSC-------------------CSSBSEEEEEGGGEEE
T ss_pred             CcCCCCCEEEEcC---------------------------CCCCC-------------------cceeEEEEEChHHeEE
Confidence            9999999997531                           11122                   4999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCC------CCCEEEEEc-cchhHHHHHHHHHHcCCcEEEEEcCCchHHHHH
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVE------VGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~------~~~~VlI~G-ag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~  242 (388)
                      +|+++++++||++++++.|||+++.+.++++      +|++|||+| +|++|++++|+|+..|+ +|+++++++++.+++
T Consensus       113 iP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~~~~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~  191 (346)
T 3fbg_A          113 APKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWT  191 (346)
T ss_dssp             CCSSSCHHHHTTSHHHHHHHHHHHHTTSCCCSSHHHHTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHH
T ss_pred             CCCCCCHHHhhhcchhHHHHHHHHHHhcCCccccccCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHH
Confidence            9999999999999999999999988888888      999999995 59999999999999999 999999999999999


Q ss_pred             HHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhc
Q 016507          243 KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  322 (388)
Q Consensus       243 ~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  322 (388)
                      +++|+++++++++    ++.+.+++..++++|+||||+|+...++.++++++++ |+++.++..    ...++...+..+
T Consensus       192 ~~lGa~~vi~~~~----~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~-G~iv~~~~~----~~~~~~~~~~~~  262 (346)
T 3fbg_A          192 KKMGADIVLNHKE----SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPR-GHIATIVAF----ENDQDLNALKPK  262 (346)
T ss_dssp             HHHTCSEEECTTS----CHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEE-EEEEESSCC----SSCBCGGGGTTT
T ss_pred             HhcCCcEEEECCc----cHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccC-CEEEEECCC----CCCCcccccccc
Confidence            9999999999864    5788888874349999999999988789999999997 999988752    234566677778


Q ss_pred             CcEEEEeeecCC---C------ccCcHHHHHHHHhCCCCCCCcceeeeE---ecchHHHHHHHHhcCce-eEEEEeeCC
Q 016507          323 GKILMGSLFGGL---K------AKSDIPILLKRYMDKELELDKFVTHEM---KFEEINSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       323 ~~~i~g~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~~i~~~~---~l~~~~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                      ++++.++++...   .      ..+.++++++++++|++.  +.++++|   |++++++|++.+++++. +|+||++++
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~~~~l~~~~~A~~~~~~g~~~GKvvl~~~~  339 (346)
T 3fbg_A          263 SLSFSHEFMFARPLNQTDDMIKHHEYLEDITNKVEQNIYQ--PTTTKVIEGLTTENIYQAHQILESNTMIGKLVINLNE  339 (346)
T ss_dssp             TCEEEECCTTHHHHTTCTTTHHHHHHHHHHHHHHHTTSSC--CCEEEEEESCCHHHHHHHHHHHHTTCCCSEEEEEC--
T ss_pred             ceEEEEEEEecccccchhhHHHHHHHHHHHHHHHHCCCEE--CCccceecCCCHHHHHHHHHHHhcCCcceEEEEecCC
Confidence            999988754321   1      024578899999999764  5588887   99999999999999875 599998763

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=100.00  E-value=3.8e-52  Score=390.35  Aligned_cols=313  Identities=20%  Similarity=0.231  Sum_probs=274.7

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      |||+++++++.+  ++++++|.|+|++|||||||.+++||++|++++.|.++..++|.++|||++|+|+++|++|++|++
T Consensus         2 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~e~~G~V~~vG~~v~~~~~   81 (325)
T 3jyn_A            2 AKRIQFSTVGGPEVLEYVDFEPEAPGPQAVVVRNKAIGLNFIDTYYRSGLYPAPFLPSGLGAEGAGVVEAVGDEVTRFKV   81 (325)
T ss_dssp             EEEEEBSSCSSGGGCEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCCCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEecCCCcceeEEeecCCCCCCCCEEEEEEEEEecCHHHHHHHCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999999877  899999999999999999999999999999999998876678999999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||||+...                             ..                   .|+|+||+.++.++++++|+++
T Consensus        82 GdrV~~~~-----------------------------~~-------------------~G~~aey~~v~~~~~~~~P~~~  113 (325)
T 3jyn_A           82 GDRVAYGT-----------------------------GP-------------------LGAYSEVHVLPEANLVKLADSV  113 (325)
T ss_dssp             TCEEEESS-----------------------------SS-------------------SCCSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEEEec-----------------------------CC-------------------CccccceEEecHHHeEECCCCC
Confidence            99997421                             11                   2499999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      ++++||++++.++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.++++++|+++++|+
T Consensus       114 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga~~~~~~  192 (325)
T 3jyn_A          114 SFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGAWETIDY  192 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CHHHHhhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCCEEEeC
Confidence            999999999999999999888889999999999995 9999999999999999 99999999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhc-CcEEEEeee
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLF  331 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~i~g~~~  331 (388)
                      ++   .++.+.+++.+++ ++|++|||+|+.. +..++++++++ |+++.+|.... ....++...++.+ .+.+.+..+
T Consensus       193 ~~---~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~  266 (325)
T 3jyn_A          193 SH---EDVAKRVLELTDGKKCPVVYDGVGQDT-WLTSLDSVAPR-GLVVSFGNASG-PVSGVNLGILAQKDSVYVTRPTL  266 (325)
T ss_dssp             TT---SCHHHHHHHHTTTCCEEEEEESSCGGG-HHHHHTTEEEE-EEEEECCCTTC-CCCSCCTHHHHHTTSCEEECCCH
T ss_pred             CC---ccHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhcCC-CEEEEEecCCC-CCCCCCHHHHhhcCcEEEEeeee
Confidence            87   7899999999988 9999999999965 89999999997 99999997543 2335677777776 567765543


Q ss_pred             cCCC-ccCc----HHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          332 GGLK-AKSD----IPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       332 ~~~~-~~~~----~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..+. ..++    ++++++++++|++++.  ++++|||+++++|++.+.+++. +|+||.+
T Consensus       267 ~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--i~~~~~l~~~~~A~~~~~~~~~~Gkvvl~p  325 (325)
T 3jyn_A          267 GSYANNAQNLQTMADELFDMLASGKLKVD--GIEQYALKDAAKAQIELSARRTTGSTILIP  325 (325)
T ss_dssp             HHHSCSTTHHHHHHHHHHHHHHTTSSCCC--CCEEEEGGGHHHHHHHHHTTCCCSCEEEEC
T ss_pred             eeecCCHHHHHHHHHHHHHHHHCCCeeCc--cccEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence            3322 2233    3588999999987765  7899999999999999998876 5999864

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=100.00  E-value=2.3e-52  Score=396.75  Aligned_cols=327  Identities=19%  Similarity=0.245  Sum_probs=273.5

Q ss_pred             CCCCCCCCCCCCCcceeeeeecCCCCC---eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccc
Q 016507            2 DIEKPSNKTAGKPIQCRAAIATAPGEP---LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHE   77 (388)
Q Consensus         2 ~~~~~~~~~~~~~~~~ka~~~~~~~~~---~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e   77 (388)
                      |+.+|--.+..+|.+|||+++.+++.+   ++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||
T Consensus        12 ~~~~~~~~~~~m~~~mka~~~~~~g~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E   91 (357)
T 1zsy_A           12 DLGTENLYFQSMPARVRALVYGHHGDPAKVVELKNLELAAVRGSDVRVKMLAAPINPSDINMIQGNYGLLPELPAVGGNE   91 (357)
T ss_dssp             CTTCSCCCCCCCCCCEEEEEESSSSCHHHHEEEEEECCCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSEECCSC
T ss_pred             CcchhhhhhhhCchhhEEEEEecCCCccceEEEeeccCCCCCCCEEEEEEEECCCCHHHhhHhcCCCCCCCCCCccccce
Confidence            666777777788889999999999875   889999999999999999999999999999999987654 3579999999


Q ss_pred             eeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccccccee
Q 016507           78 AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFS  157 (388)
Q Consensus        78 ~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a  157 (388)
                      ++|+|+++|++|++|++||||++.+.                                                +.|+|+
T Consensus        92 ~~G~V~~vG~~v~~~~vGdrV~~~~~------------------------------------------------~~G~~a  123 (357)
T 1zsy_A           92 GVAQVVAVGSNVTGLKPGDWVIPANA------------------------------------------------GLGTWR  123 (357)
T ss_dssp             CEEEEEEECTTCCSCCTTCEEEESSS------------------------------------------------CSCCSB
T ss_pred             EEEEEEEeCCCCCCCCCCCEEEEcCC------------------------------------------------CCccce
Confidence            99999999999999999999975321                                                124999


Q ss_pred             eeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          158 EYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       158 ~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ||+.+++++++++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|+ +++++.+++
T Consensus       124 ey~~v~~~~~~~iP~~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak~~Ga-~vi~~~~~~  202 (357)
T 1zsy_A          124 TEAVFSEEALIQVPSDIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGL-RTINVVRDR  202 (357)
T ss_dssp             SEEEEEGGGEEEECSSSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEECCC
T ss_pred             eEEecCHHHcEECCCCCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHHHcCC-EEEEEecCc
Confidence            99999999999999999999999999999999998877789999999999997 9999999999999999 666665443


Q ss_pred             ----hHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC--CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCC
Q 016507          237 ----EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS  310 (388)
Q Consensus       237 ----~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g--~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~  310 (388)
                          ++.++++++|+++++|+++   . ..+.+.+.+.+  ++|+||||+|+.. ...++++++++ |+++.+|... ..
T Consensus       203 ~~~~~~~~~~~~lGa~~vi~~~~---~-~~~~~~~~~~~~~~~Dvvid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~-~~  275 (357)
T 1zsy_A          203 PDIQKLSDRLKSLGAEHVITEEE---L-RRPEMKNFFKDMPQPRLALNCVGGKS-STELLRQLARG-GTMVTYGGMA-KQ  275 (357)
T ss_dssp             SCHHHHHHHHHHTTCSEEEEHHH---H-HSGGGGGTTSSSCCCSEEEESSCHHH-HHHHHTTSCTT-CEEEECCCCT-TC
T ss_pred             cchHHHHHHHHhcCCcEEEecCc---c-hHHHHHHHHhCCCCceEEEECCCcHH-HHHHHHhhCCC-CEEEEEecCC-CC
Confidence                2568899999999998643   1 12345555554  5999999999877 56799999997 9999998643 34


Q ss_pred             ccccCHHHHHhcCcEEEEeeecCCC-------ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEE
Q 016507          311 QLSLSSFEVLHSGKILMGSLFGGLK-------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRC  382 (388)
Q Consensus       311 ~~~~~~~~~~~~~~~i~g~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kv  382 (388)
                      ...++...++.+++++.|++...+.       ..+.++++++++++|++++.  +.++|||+++++|++.+.++.. +|+
T Consensus       276 ~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gKv  353 (357)
T 1zsy_A          276 PVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQLTAP--ACSQVPLQDYQSALEASMKPFISSKQ  353 (357)
T ss_dssp             CBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCC--CEEEEEGGGHHHHHHHHTSSSCSSEE
T ss_pred             CCCCCHHHHHhcCceEEEEEcchhcccCCHHHHHHHHHHHHHHHHcCCCcCc--cceEEcHHHHHHHHHHHHhCCCCCcE
Confidence            5667777788899999998754321       12357889999999987654  5699999999999999987764 599


Q ss_pred             EEee
Q 016507          383 VIWM  386 (388)
Q Consensus       383 vv~~  386 (388)
                      ||++
T Consensus       354 vl~~  357 (357)
T 1zsy_A          354 ILTM  357 (357)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9874

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=100.00  E-value=4.8e-52  Score=394.04  Aligned_cols=322  Identities=19%  Similarity=0.247  Sum_probs=273.6

Q ss_pred             CCCCcceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecC
Q 016507           11 AGKPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGE   87 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~   87 (388)
                      .+.+.+|||+++.+++.+  ++++++|.|+|+++||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|+
T Consensus        17 ~~~~~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~E~~G~V~~vG~   96 (354)
T 2j8z_A           17 NLYFQSMLAVHFDKPGGPENLYVKEVAKPSPGEGEVLLKVAASALNRADLMQRQGQYDPPPGASNILGLEASGHVAELGP   96 (354)
T ss_dssp             ----CEEEEEEESSCSSGGGEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCCTTSCSSSCSEEEEEEEEECS
T ss_pred             ccchhheeEEEEccCCCccceEEeecCCCCCCCCeEEEEEEEeecCHHHHHHhCCCCCCCCCCCcccceeeEEEEEEECC
Confidence            456788999999998864  889999999999999999999999999999999987654 34789999999999999999


Q ss_pred             CC-CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCc
Q 016507           88 NV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (388)
Q Consensus        88 ~v-~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~  166 (388)
                      +| ++|++||||+...                              .+                   |+|+||+.+++++
T Consensus        97 ~v~~~~~vGdrV~~~~------------------------------~~-------------------G~~aey~~v~~~~  127 (354)
T 2j8z_A           97 GCQGHWKIGDTAMALL------------------------------PG-------------------GGQAQYVTVPEGL  127 (354)
T ss_dssp             CC--CCCTTCEEEEEC------------------------------SS-------------------CCSBSEEEEEGGG
T ss_pred             CcCCCCCCCCEEEEec------------------------------CC-------------------CcceeEEEeCHHH
Confidence            99 9999999997421                              11                   4999999999999


Q ss_pred             eEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc
Q 016507          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (388)
Q Consensus       167 ~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l  245 (388)
                      ++++|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++
T Consensus       128 ~~~iP~~ls~~~aa~l~~~~~tA~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~  206 (354)
T 2j8z_A          128 LMPIPEGLTLTQAAAIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKL  206 (354)
T ss_dssp             EEECCTTCCHHHHTTSHHHHHHHHHHHTTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred             cEECCCCCCHHHHHhccchHHHHHHHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc
Confidence            99999999999999999999999998878889999999999985 9999999999999999 999999999999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCH-HHHHhcC
Q 016507          246 GVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSS-FEVLHSG  323 (388)
Q Consensus       246 ga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~  323 (388)
                      |++.++|.++   .++.+.+.+.+++ ++|++|||+|+.. +..++++++++ |+++.+|.... ....++. ..++.++
T Consensus       207 g~~~~~~~~~---~~~~~~~~~~~~~~~~d~vi~~~G~~~-~~~~~~~l~~~-G~iv~~G~~~~-~~~~~~~~~~~~~~~  280 (354)
T 2j8z_A          207 GAAAGFNYKK---EDFSEATLKFTKGAGVNLILDCIGGSY-WEKNVNCLALD-GRWVLYGLMGG-GDINGPLFSKLLFKR  280 (354)
T ss_dssp             TCSEEEETTT---SCHHHHHHHHTTTSCEEEEEESSCGGG-HHHHHHHEEEE-EEEEECCCTTC-SCCCSCHHHHHHHTT
T ss_pred             CCcEEEecCC---hHHHHHHHHHhcCCCceEEEECCCchH-HHHHHHhccCC-CEEEEEeccCC-CccCCChhHHHHhCC
Confidence            9999999887   7788889888876 8999999999985 89999999997 99999997532 3356777 7788899


Q ss_pred             cEEEEeeecCCCcc-------CcHHHHHHHHhCC-CCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeCC
Q 016507          324 KILMGSLFGGLKAK-------SDIPILLKRYMDK-ELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       324 ~~i~g~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                      +++.|++.......       +.++++++++++| ++.+.++++++|||+++++|++.+.+++. +|+||++++
T Consensus       281 ~~i~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~~  354 (354)
T 2j8z_A          281 GSLITSLLRSRDNKYKQMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEIQEAHKYMEANKNIGKIVLELPQ  354 (354)
T ss_dssp             CEEEECCSTTCCHHHHHHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGHHHHHHHHHTTCCSSEEEEECCC
T ss_pred             CEEEEEEcccccccccHHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHHHHHHHHHHhCCCCceEEEecCC
Confidence            99999865443210       1124577888889 45556779999999999999999988664 699998763

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=4.6e-52  Score=392.47  Aligned_cols=315  Identities=18%  Similarity=0.202  Sum_probs=270.7

Q ss_pred             CCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC--CCCCcccccceeEEEEEecCCCC
Q 016507           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP--AVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~--~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      .|.+|||+++.+++++++++++|.|+|+++||||||.+++||++|++++.|..+.  ..+|.++|||++|+|+++|++|+
T Consensus         4 ~~~~mka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~P~v~G~E~~G~V~~vG~~v~   83 (343)
T 3gaz_A            4 TTPTMIAAVVEEANGPFVLRKLARPQPAPGQVLVQIEASGTNPLDAKIRAGEAPHAQQPLPAILGMDLAGTVVAVGPEVD   83 (343)
T ss_dssp             --CEEEEEEECSTTCCEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCCGGGCCCSSBCCCCEEEEEEEEECTTCC
T ss_pred             CchhheEEEEecCCCceEEEeccCCCCCCCEEEEEEEEEEeCHhhHHHhCCCCCCCCCCCCcccCcceEEEEEEECCCCC
Confidence            3577999999999988999999999999999999999999999999999886532  56899999999999999999999


Q ss_pred             CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEc
Q 016507           91 GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKV  170 (388)
Q Consensus        91 ~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l  170 (388)
                      +|++||||+....           +..              ..                   .|+|+||+.++.++++++
T Consensus        84 ~~~vGdrV~~~~~-----------g~~--------------~~-------------------~G~~aey~~v~~~~~~~~  119 (343)
T 3gaz_A           84 SFRVGDAVFGLTG-----------GVG--------------GL-------------------QGTHAQFAAVDARLLASK  119 (343)
T ss_dssp             SCCTTCEEEEECC-----------SST--------------TC-------------------CCSSBSEEEEEGGGEEEC
T ss_pred             CCCCCCEEEEEeC-----------CCC--------------CC-------------------CcceeeEEEecHHHeeeC
Confidence            9999999975211           000              01                   249999999999999999


Q ss_pred             CCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          171 DPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       171 P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      |+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++ .+++++++++++|++.
T Consensus       120 P~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa~~  197 (343)
T 3gaz_A          120 PAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGATP  197 (343)
T ss_dssp             CTTSCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTSEE
T ss_pred             CCCCCHHHHHHhhhhHHHHHHHHHHhcCCCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCCCE
Confidence            9999999999999999999998878899999999999995 9999999999999999 89999 8899999999999998


Q ss_pred             EEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEE
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMG  328 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g  328 (388)
                       +| ++   .++.+.+++.+++ ++|+||||+|+.. +..++++++++ |+++.+|...     .++...++.+++++.+
T Consensus       198 -i~-~~---~~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~g~~~-----~~~~~~~~~~~~~~~g  265 (343)
T 3gaz_A          198 -ID-AS---REPEDYAAEHTAGQGFDLVYDTLGGPV-LDASFSAVKRF-GHVVSCLGWG-----THKLAPLSFKQATYSG  265 (343)
T ss_dssp             -EE-TT---SCHHHHHHHHHTTSCEEEEEESSCTHH-HHHHHHHEEEE-EEEEESCCCS-----CCCCHHHHHTTCEEEE
T ss_pred             -ec-cC---CCHHHHHHHHhcCCCceEEEECCCcHH-HHHHHHHHhcC-CeEEEEcccC-----ccccchhhhcCcEEEE
Confidence             77 55   6788899999888 9999999999865 99999999997 9999998743     3455677788999998


Q ss_pred             eeecCC--------CccCcHHHHHHHHhCCCCCCCccee-eeEecchHHHHHHHHhcCce-----eEEEEeeC
Q 016507          329 SLFGGL--------KAKSDIPILLKRYMDKELELDKFVT-HEMKFEEINSAFDLLIKGKC-----LRCVIWMG  387 (388)
Q Consensus       329 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~l~~~~~A~~~~~~~~~-----~kvvv~~~  387 (388)
                      ++....        ...++++++++++++|++.  ++++ ++|||+++++|++.+.+++.     +|+|++++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~~l~~~~~A~~~~~~~~~~Gr~~GK~v~~~~  336 (343)
T 3gaz_A          266 VFTLHTLLANEGLAHFGEMLREADALVQTGKLA--PRLDPRTFSIAEIGSAYDAVLGRNDVPRQRGKIAITVE  336 (343)
T ss_dssp             CCTTHHHHHTCSHHHHHHHHHHHHHHHHTTCCC--CCBCSCCEETTCHHHHHHHHHTCTTCCCCSSBCEEECC
T ss_pred             EEeccchhcccchHHHHHHHHHHHHHHHCCCcc--cCccCcEecHHHHHHHHHHHHcCCCcccccceEEEEec
Confidence            753211        0125688999999999765  5677 79999999999999988653     59999875

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=100.00  E-value=6.1e-52  Score=394.38  Aligned_cols=317  Identities=16%  Similarity=0.146  Sum_probs=270.3

Q ss_pred             CCCcceeeeeecCC---CCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEec
Q 016507           12 GKPIQCRAAIATAP---GEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVG   86 (388)
Q Consensus        12 ~~~~~~ka~~~~~~---~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG   86 (388)
                      -.+|+|||+++.++   +.+  ++++++|.|+|+++||||||.+++||++|++.+.|..+...+|.++|||++|+|+++|
T Consensus        18 ~~m~~MkA~~~~~~~~~~~~~~l~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG   97 (363)
T 4dvj_A           18 LYFQSMKAVGYNKPAPITDDASLLDIELPKPAPAGHDILVEVKAVSVNPVDYKVRRSTPPDGTDWKVIGYDAAGIVSAVG   97 (363)
T ss_dssp             -CCCEEEEEEBSSCCCTTSTTSSEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHHCCC--CCSBCCCCCEEEEEEEEC
T ss_pred             hhhheeEEEEEeccCCCCCCceEEEeecCCCCCCCCEEEEEEEEEEeCHHHHHHHcCCCCCCCCCCcccceeEEEEEEeC
Confidence            35688999999776   222  9999999999999999999999999999999999987766789999999999999999


Q ss_pred             CCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCc
Q 016507           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (388)
Q Consensus        87 ~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~  166 (388)
                      ++|++|++||||+...                           +...+                   |+|+||+.++.++
T Consensus        98 ~~v~~~~vGdrV~~~~---------------------------~~~~~-------------------G~~aey~~v~~~~  131 (363)
T 4dvj_A           98 PDVTLFRPGDEVFYAG---------------------------SIIRP-------------------GTNAEFHLVDERI  131 (363)
T ss_dssp             TTCCSCCTTCEEEECC---------------------------CTTSC-------------------CSCBSEEEEEGGG
T ss_pred             CCCCCCCCCCEEEEcc---------------------------CCCCC-------------------ccceEEEEeCHHH
Confidence            9999999999997521                           11223                   4999999999999


Q ss_pred             eEEcCCCCCccccccccchhhhhHHHHHHhcCCC-----CCCEEEEEc-cchhHHHHHHHHHHc-CCcEEEEEcCCchHH
Q 016507          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVE-----VGSTVVIFG-LGSIGLAVAEGARLC-GATRIIGVDVISEKF  239 (388)
Q Consensus       167 ~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~-----~~~~VlI~G-ag~vG~~ai~la~~~-g~~~Vi~~~~~~~~~  239 (388)
                      ++++|+++++++||+++++++|||+++.+.++++     +|++|||+| +|++|++++|+|+.+ |+ +|+++++++++.
T Consensus       132 ~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~~g~~VlV~Ga~G~vG~~a~qlak~~~g~-~Vi~~~~~~~~~  210 (363)
T 4dvj_A          132 VGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVGGAGGVGSIAVQIARQRTDL-TVIATASRPETQ  210 (363)
T ss_dssp             CEECCTTSCHHHHHTSHHHHHHHHHHHHTTSCTTSCCTTSEEEEEEESTTSHHHHHHHHHHHHHCCS-EEEEECSSHHHH
T ss_pred             eeECCCCCCHHHHHhhhhHHHHHHHHHHHhhCcCcCcCCCCCEEEEECCCCHHHHHHHHHHHHhcCC-EEEEEeCCHHHH
Confidence            9999999999999999999999999988888888     899999998 599999999999984 77 999999999999


Q ss_pred             HHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH
Q 016507          240 EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV  319 (388)
Q Consensus       240 ~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~  319 (388)
                      ++++++|+++++|+++    ++.+.++++.++++|+||||+|+...++.++++++++ |+++.+|.     ...++...+
T Consensus       211 ~~~~~lGad~vi~~~~----~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~-G~iv~~g~-----~~~~~~~~~  280 (363)
T 4dvj_A          211 EWVKSLGAHHVIDHSK----PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQ-GRFCLIDD-----PSAFDIMLF  280 (363)
T ss_dssp             HHHHHTTCSEEECTTS----CHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTT-CEEEECSC-----CSSCCGGGG
T ss_pred             HHHHHcCCCEEEeCCC----CHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCC-CEEEEECC-----CCccchHHH
Confidence            9999999999999864    5788888885449999999999987789999999997 99999964     234666677


Q ss_pred             HhcCcEEEEeeecCC-----Cc----cCcHHHHHHHHhCCCCCCCcceeeeE---ecchHHHHHHHHhcCce-eEEEEee
Q 016507          320 LHSGKILMGSLFGGL-----KA----KSDIPILLKRYMDKELELDKFVTHEM---KFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       320 ~~~~~~i~g~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~i~~~~---~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..+++++.++.....     ..    .+.++++++++++|++.+  .++++|   +++++++|++.+.++.. +|+||++
T Consensus       281 ~~k~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~~l~~~~~A~~~~~~~~~~GKvVl~~  358 (363)
T 4dvj_A          281 KRKAVSIHHELMFTRPMFGTPDMSEQGRLLNDVSRLVDEGRLRT--TLTNRLSPINAANLKQAHALVESGTARGKVVIEG  358 (363)
T ss_dssp             TTTTCEEEECCTTHHHHHTCTTTHHHHHHHHHHHHHHHHTSSCC--CEEEEECSCSHHHHHHHHHHHHHTCCCSEEEEEC
T ss_pred             hhccceEEEEEeeccccccCcchhhHHHHHHHHHHHHHCCCeec--cccceecCCCHHHHHHHHHHHHhCCCceEEEEeC
Confidence            788999988654321     00    245789999999997654  477766   99999999999998876 5999987


Q ss_pred             C
Q 016507          387 G  387 (388)
Q Consensus       387 ~  387 (388)
                      .
T Consensus       359 ~  359 (363)
T 4dvj_A          359 F  359 (363)
T ss_dssp             S
T ss_pred             c
Confidence            5

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.7e-52  Score=396.52  Aligned_cols=315  Identities=19%  Similarity=0.265  Sum_probs=264.1

Q ss_pred             cceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCC
Q 016507           15 IQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        15 ~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      |+|||+++++++.+  ++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|++|++
T Consensus         2 m~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~e~~G~V~~vG~~v~~   81 (349)
T 4a27_A            2 MEMRAVVLAGFGGLNKLRLFRKAMPEPQDGELKIRVKACGLNFIDLMVRQGNIDNPPKTPLVPGFECSGIVEALGDSVKG   81 (349)
T ss_dssp             CCEEEEEECSSSSGGGEEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSEEEEEEEEECTTCCS
T ss_pred             ceeEEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCcCCCCCCCccccceeEEEEEEeCCCCCC
Confidence            78999999999864  899999999999999999999999999999999998653 578999999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      |++||||+...                              .                   .|+|+||+.++.++++++|
T Consensus        82 ~~~GdrV~~~~------------------------------~-------------------~G~~aey~~v~~~~~~~iP  112 (349)
T 4a27_A           82 YEIGDRVMAFV------------------------------N-------------------YNAWAEVVCTPVEFVYKIP  112 (349)
T ss_dssp             CCTTCEEEEEC------------------------------S-------------------SCCSBSEEEEEGGGEEECC
T ss_pred             CCCCCEEEEec------------------------------C-------------------CCcceEEEEecHHHeEECC
Confidence            99999997431                              1                   2499999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF  250 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v  250 (388)
                      +++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+.+|..+|++++ ++++.++++ +|++++
T Consensus       113 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~-~~~~~~~~~-~ga~~~  190 (349)
T 4a27_A          113 DDMSFSEAAAFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTA-STFKHEAIK-DSVTHL  190 (349)
T ss_dssp             TTSCHHHHHTSHHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEE-CGGGHHHHG-GGSSEE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeC-CHHHHHHHH-cCCcEE
Confidence            999999999999999999998888899999999999998 99999999999998644899887 567888888 999999


Q ss_pred             EcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCC---------------CccccC
Q 016507          251 VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG---------------SQLSLS  315 (388)
Q Consensus       251 ~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~---------------~~~~~~  315 (388)
                      +| ++   .++.+.+++.+++++|+||||+|+.. +..++++++++ |+++.+|.....               ....++
T Consensus       191 ~~-~~---~~~~~~~~~~~~~g~Dvv~d~~g~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (349)
T 4a27_A          191 FD-RN---ADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLSLLKPL-GTYILYGSSNMVTGETKSFFSFAKSWWQVEKVN  264 (349)
T ss_dssp             EE-TT---SCHHHHHHHHCTTCEEEEEEECC--------CTTEEEE-EEEEEEC-------------------------C
T ss_pred             Ec-CC---ccHHHHHHHhcCCCceEEEECCCchh-HHHHHHHhhcC-CEEEEECCCcccccccccccccccccccccccC
Confidence            99 55   68899999988669999999999987 69999999997 999999964211               112366


Q ss_pred             HHHHHhcCcEEEEeeecCCC--------ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          316 SFEVLHSGKILMGSLFGGLK--------AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       316 ~~~~~~~~~~i~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ...++.+++.+.|+....+.        ..++++++++++++|++  +++++++|||+++++|++.+.++.. +|+||++
T Consensus       265 ~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~l~~~~~~GKvvi~~  342 (349)
T 4a27_A          265 PIKLYEENKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKI--KPVVDSLWALEEVKEAMQRIHDRGNIGKLILDV  342 (349)
T ss_dssp             HHHHHHHTCEEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSC--CCCEEEEECGGGHHHHHHHHHTTCCSSEEEEET
T ss_pred             HHHHhhcCceEEEEeehheeccccchHHHHHHHHHHHHHHHCCCc--cccccceECHHHHHHHHHHHHhCCCCceEEEec
Confidence            67778889999998753321        14578899999999976  5678999999999999999988765 5999997


Q ss_pred             CC
Q 016507          387 GE  388 (388)
Q Consensus       387 ~~  388 (388)
                      ++
T Consensus       343 ~~  344 (349)
T 4a27_A          343 EK  344 (349)
T ss_dssp             TC
T ss_pred             CC
Confidence            64

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=100.00  E-value=5.1e-53  Score=400.18  Aligned_cols=318  Identities=16%  Similarity=0.161  Sum_probs=268.7

Q ss_pred             CCCcceeeeeec--C---CCCCeEEEEe---------ecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCccccc
Q 016507           12 GKPIQCRAAIAT--A---PGEPLVIDEV---------IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGH   76 (388)
Q Consensus        12 ~~~~~~ka~~~~--~---~~~~~~~~~~---------~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~   76 (388)
                      ++|.+|||++++  +   ..+.++++++         |.|+|+++||||||.+++||++|++.++|.++. ..+|.++||
T Consensus         6 ~~p~~mka~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~p~v~G~   85 (349)
T 3pi7_A            6 TIPSEMKALLLVGDGYTKTPSGSALEAMEPYLEQGRIAVPAPGPSQVLIKVNLASINPSDVAFIKGQYGQPRVKGRPAGF   85 (349)
T ss_dssp             CCCSEEEEEEECSCBSCSSCCCSCCCCSTTTEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHTTCSSSCBCTTSBCCS
T ss_pred             CCchhheEEEEEccccCCCcccceEEEeecccccccCCCCCCCCCeEEEEEEEecCCHHHHHHhcccCCCCCCCCCCccc
Confidence            367789999999  2   2233777788         999999999999999999999999999997653 467999999


Q ss_pred             ceeEEEEEecCCC-CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccc
Q 016507           77 EAIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSS  155 (388)
Q Consensus        77 e~~G~Vv~vG~~v-~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~  155 (388)
                      |++|+|+++|++| ++|++||||++.                           .|...+                   |+
T Consensus        86 E~~G~V~~vG~~v~~~~~vGdrV~~~---------------------------~g~~~~-------------------G~  119 (349)
T 3pi7_A           86 EGVGTIVAGGDEPYAKSLVGKRVAFA---------------------------TGLSNW-------------------GS  119 (349)
T ss_dssp             EEEEEEEEECSSHHHHHHTTCEEEEE---------------------------CTTSSC-------------------CS
T ss_pred             eEEEEEEEECCCccCCCCCCCEEEEe---------------------------ccCCCC-------------------cc
Confidence            9999999999999 999999999864                           222233                   49


Q ss_pred             eeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCC-CEEEEEc-cchhHHHHHHHHHHcCCcEEEEEc
Q 016507          156 FSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVIFG-LGSIGLAVAEGARLCGATRIIGVD  233 (388)
Q Consensus       156 ~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~VlI~G-ag~vG~~ai~la~~~g~~~Vi~~~  233 (388)
                      |+||+.++.++++++|+++++++||++++.++|||+ +++.++ +++ ++|||+| +|++|++++|+|+..|+ +|++++
T Consensus       120 ~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~-~~~~~~-~~g~~~vli~gg~g~vG~~a~qla~~~Ga-~Vi~~~  196 (349)
T 3pi7_A          120 WAEYAVAEAAACIPLLDTVRDEDGAAMIVNPLTAIA-MFDIVK-QEGEKAFVMTAGASQLCKLIIGLAKEEGF-RPIVTV  196 (349)
T ss_dssp             SBSEEEEEGGGEEECCTTCCC--GGGSSHHHHHHHH-HHHHHH-HHCCSEEEESSTTSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             ceeeEeechHHeEECCCCCCHHHHhhccccHHHHHH-HHHHHh-hCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence            999999999999999999999999999999999996 556666 666 6888885 59999999999999999 999999


Q ss_pred             CCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCcc
Q 016507          234 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQL  312 (388)
Q Consensus       234 ~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~  312 (388)
                      ++++++++++++|+++++|+++   .++.+.+++++++ ++|+||||+|+.. +..++++++++ |+++.+|... ....
T Consensus       197 ~~~~~~~~~~~~Ga~~~~~~~~---~~~~~~v~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~G~~~-~~~~  270 (349)
T 3pi7_A          197 RRDEQIALLKDIGAAHVLNEKA---PDFEATLREVMKAEQPRIFLDAVTGPL-ASAIFNAMPKR-ARWIIYGRLD-PDAT  270 (349)
T ss_dssp             SCGGGHHHHHHHTCSEEEETTS---TTHHHHHHHHHHHHCCCEEEESSCHHH-HHHHHHHSCTT-CEEEECCCSC-CSCC
T ss_pred             CCHHHHHHHHHcCCCEEEECCc---HHHHHHHHHHhcCCCCcEEEECCCChh-HHHHHhhhcCC-CEEEEEeccC-CCCC
Confidence            9999999999999999999987   7899999999887 9999999999987 78999999997 9999999743 3345


Q ss_pred             ccCH-HHHHhcCcEEEEeeecCCCc------cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEe
Q 016507          313 SLSS-FEVLHSGKILMGSLFGGLKA------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIW  385 (388)
Q Consensus       313 ~~~~-~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~  385 (388)
                      .++. ..++.+++++.|++...+..      .++++++++++++|++  +++++++|||+++++|++.+.++..+|+||+
T Consensus       271 ~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~gKvvl~  348 (349)
T 3pi7_A          271 VIREPGQLIFQHKHIEGFWLSEWMRQFKERRGPAILEAQKRFSDGRW--STDVTAVVPLAEAIAWVPAELTKPNGKVFIR  348 (349)
T ss_dssp             CCSCTHHHHHSCCEEEECCHHHHHHHTHHHHHHHHHHC-CTTTTSSC--CC-CCEEEEHHHHHHHHHHHHTSSSSCEEEE
T ss_pred             CCCchhhhhccccEEEEEEehhhhhhCcHHHHHHHHHHHHHHHcCCc--ccccceEEcHHHHHHHHHHHhCCCCceEEEe
Confidence            5676 77888999999987654211      3467788889999976  4568999999999999997666666799997


Q ss_pred             e
Q 016507          386 M  386 (388)
Q Consensus       386 ~  386 (388)
                      +
T Consensus       349 p  349 (349)
T 3pi7_A          349 P  349 (349)
T ss_dssp             C
T ss_pred             C
Confidence            5

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=100.00  E-value=3.2e-53  Score=396.05  Aligned_cols=303  Identities=18%  Similarity=0.201  Sum_probs=246.2

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      .+|||+++.+..+.++++++|.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|++
T Consensus         3 ~tMka~~~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~i~G~e~~G~V~~vG~~v~~~~v   82 (315)
T 3goh_A            3 EQHQVWAYQTKTHSVTLNSVDIPALAADDILVQNQAIGINPVDWKFIKANPINWSNGHVPGVDGAGVIVKVGAKVDSKML   82 (315)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCCCCTTEEEEEEEEEEECHHHHHHHHHCTTCCCTTCCCCSEEEEEEEEECTTSCGGGT
T ss_pred             cceEEEEEeCCCCeeEEEecCCCCCCCCEEEEEEEEEecCHHHHHHHcCCCCcCCCCCEeeeeeEEEEEEeCCCCCCCCC
Confidence            46999999953334999999999999999999999999999999999998876788999999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||||+..+                           +...+                   |+|+||+.++.++++++|+++
T Consensus        83 GdrV~~~~---------------------------~~~~~-------------------G~~aey~~v~~~~~~~iP~~~  116 (315)
T 3goh_A           83 GRRVAYHT---------------------------SLKRH-------------------GSFAEFTVLNTDRVMTLPDNL  116 (315)
T ss_dssp             TCEEEEEC---------------------------CTTSC-------------------CSSBSEEEEETTSEEECCTTS
T ss_pred             CCEEEEeC---------------------------CCCCC-------------------cccccEEEEcHHHhccCcCCC
Confidence            99998642                           22223                   499999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++++||+++++++|||+++ +.+++++|++|||+|+|++|++++|+|+.+|+ +|++++ ++++.++++++|++++++  
T Consensus       117 ~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa~~v~~--  191 (315)
T 3goh_A          117 SFERAAALPCPLLTAWQAF-EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGVRHLYR--  191 (315)
T ss_dssp             CHHHHHTSHHHHHHHHHHH-TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTEEEEES--
T ss_pred             CHHHHhhCccHHHHHHHHH-hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCCCEEEc--
Confidence            9999999999999999988 88999999999999999999999999999999 999999 899999999999999984  


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                      +  .+    .   + ++++|+||||+|+.. ...++++++++ |+++.+|.....  ..+   ..+.+.+.+....+...
T Consensus       192 d--~~----~---v-~~g~Dvv~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~--~~~---~~~~~~~~~~~~~~~~~  254 (315)
T 3goh_A          192 E--PS----Q---V-TQKYFAIFDAVNSQN-AAALVPSLKAN-GHIICIQDRIPA--PID---PAFTRTISYHEIALGAL  254 (315)
T ss_dssp             S--GG----G---C-CSCEEEEECC--------TTGGGEEEE-EEEEEECCC---------------CCSEEEEECGGGH
T ss_pred             C--HH----H---h-CCCccEEEECCCchh-HHHHHHHhcCC-CEEEEEeCCCCc--ccc---chhhhcceeeEEEeecc
Confidence            1  11    1   1 349999999999987 68899999997 999999864321  111   22334555555443321


Q ss_pred             C---c-------cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCceeEEEEeeCC
Q 016507          335 K---A-------KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKCLRCVIWMGE  388 (388)
Q Consensus       335 ~---~-------~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~~kvvv~~~~  388 (388)
                      .   .       .+.++++++++++|++  +++++++|||+++++|++.+. +..+|+||+++|
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~-~~~gKvvi~~~~  315 (315)
T 3goh_A          255 HDFGDRQDWQILMQQGEALLTLIAQGKM--EIAAPDIFRFEQMIEALDHSE-QTKLKTVLTLNE  315 (315)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSS--CCCCCEEEEGGGHHHHHHHHH-HHCCCEEEESCC
T ss_pred             cccCChhHHHHHHHHHHHHHHHHHCCCc--ccccceEecHHHHHHHHHHHH-hcCCcEEEEecC
Confidence            1   1       1246789999999965  467899999999999999998 556799999875

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=100.00  E-value=2e-51  Score=384.78  Aligned_cols=308  Identities=18%  Similarity=0.183  Sum_probs=261.5

Q ss_pred             CcceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCC-----CCCCCCcccccceeEEEEEec
Q 016507           14 PIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-----FPAVFPRILGHEAIGVVESVG   86 (388)
Q Consensus        14 ~~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-----~~~~~p~v~G~e~~G~Vv~vG   86 (388)
                      +++|||+++.+++++  ++++++|.|+|+++||||||.+++||++|++.++|..     ....+|.++|||++|+|+++|
T Consensus         4 m~~Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~~~p~v~G~E~~G~V~~vG   83 (321)
T 3tqh_A            4 MKEMKAIQFDQFGPPKVLKLVDTPTPEYRKNQMLIKVHAASLNPIDYKTRNGSGFVAKKLKNNLPSGLGYDFSGEVIELG   83 (321)
T ss_dssp             -CEEEEEEESSSCSGGGEEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHTTCSHHHHHHTTSCSBCCCCEEEEEEEEEC
T ss_pred             cccceEEEEccCCCcceeEEEecCCCCCCCCEEEEEEEEEEcCHHHHHHhcCCccccccccCCCCCcccceeEEEEEEeC
Confidence            367999999998877  9999999999999999999999999999999998831     234679999999999999999


Q ss_pred             CCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCc
Q 016507           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (388)
Q Consensus        87 ~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~  166 (388)
                      ++|++|++||||+..+..+                          ..+                   |+|+||+.++.++
T Consensus        84 ~~v~~~~~GdrV~~~~~~~--------------------------~~~-------------------G~~aey~~v~~~~  118 (321)
T 3tqh_A           84 SDVNNVNIGDKVMGIAGFP--------------------------DHP-------------------CCYAEYVCASPDT  118 (321)
T ss_dssp             TTCCSCCTTCEEEEECSTT--------------------------TCC-------------------CCSBSEEEECGGG
T ss_pred             CCCCCCCCCCEEEEccCCC--------------------------CCC-------------------CcceEEEEecHHH
Confidence            9999999999998653110                          112                   4999999999999


Q ss_pred             eEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEc-cchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc
Q 016507          167 VVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (388)
Q Consensus       167 ~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~G-ag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l  245 (388)
                      ++++|+++++++||++++++.|||+++ +.+++++|++|||+| +|++|++++|+|+.+|+ +|++++ ++++.++++++
T Consensus       119 ~~~iP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~l  195 (321)
T 3tqh_A          119 IIQKLEKLSFLQAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKAL  195 (321)
T ss_dssp             EEECCTTSCHHHHHHSHHHHHHHHHHH-HHTTCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHH
T ss_pred             hccCCCCCCHHHHhhhhhHHHHHHHHH-HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHc
Confidence            999999999999999999999999987 889999999999997 59999999999999999 899987 56678999999


Q ss_pred             CCcEEEcCCCCCCcc-HHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCc
Q 016507          246 GVTEFVNSKNCGDKS-VSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  324 (388)
Q Consensus       246 ga~~v~~~~~~~~~~-~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  324 (388)
                      |+++++|+++   .+ +.+.+     .++|+||||+|++. ...++++++++ |+++.+|....    ......+..+++
T Consensus       196 Ga~~~i~~~~---~~~~~~~~-----~g~D~v~d~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~----~~~~~~~~~~~~  261 (321)
T 3tqh_A          196 GAEQCINYHE---EDFLLAIS-----TPVDAVIDLVGGDV-GIQSIDCLKET-GCIVSVPTITA----GRVIEVAKQKHR  261 (321)
T ss_dssp             TCSEEEETTT---SCHHHHCC-----SCEEEEEESSCHHH-HHHHGGGEEEE-EEEEECCSTTH----HHHHHHHHHTTC
T ss_pred             CCCEEEeCCC---cchhhhhc-----cCCCEEEECCCcHH-HHHHHHhccCC-CEEEEeCCCCc----hhhhhhhhhcce
Confidence            9999999887   55 44433     38999999999988 59999999997 99999986321    111234567789


Q ss_pred             EEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          325 ILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       325 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      ++.++...  ...++++++++++++|++++  .++++|||+++++|++.+++++. +|+||+++
T Consensus       262 ~~~~~~~~--~~~~~~~~~~~l~~~g~l~~--~i~~~~~l~~~~~A~~~~~~~~~~gKvvl~~~  321 (321)
T 3tqh_A          262 RAFGLLKQ--FNIEELHYLGKLVSEDKLRI--EISRIFQLSEAVTAHELLETGHVRGKLVFKVR  321 (321)
T ss_dssp             EEECCCCC--CCHHHHHHHHHHHHTTSSCC--CEEEEECGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             EEEEEecC--CCHHHHHHHHHHHHCCCccc--ccccEEcHHHHHHHHHHHHcCCCCceEEEEeC
Confidence            98885422  23467999999999997665  58999999999999999998875 59999874

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=100.00  E-value=3.5e-51  Score=389.93  Aligned_cols=321  Identities=17%  Similarity=0.169  Sum_probs=268.3

Q ss_pred             CcceeeeeecCCCCC---eEEEEeecCCCC--CCeEEEEEceeccCcccccccccCCCC-CCCC---------cccccce
Q 016507           14 PIQCRAAIATAPGEP---LVIDEVIVDPPN--SHEVRVRIICTSLCHSDVTFWKMKDFP-AVFP---------RILGHEA   78 (388)
Q Consensus        14 ~~~~ka~~~~~~~~~---~~~~~~~~p~~~--~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p---------~v~G~e~   78 (388)
                      +++|||+++.+++++   ++++++|.|+|+  ++||||||.+++||++|++.+.|.++. ..+|         .++|||+
T Consensus         1 ~~~mka~~~~~~g~~~~~l~~~~~~~P~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~P~~~~~~~p~~i~G~E~   80 (364)
T 1gu7_A            1 MITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEG   80 (364)
T ss_dssp             CEEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCC
T ss_pred             CceEEEEEeccCCCchheeEEeeccCCCCCCCCCeEEEEEEeccCCHHHHHHhcCCCCCCCCCCccccccCcccccCcee
Confidence            478999999999975   899999999887  999999999999999999999987653 3457         8999999


Q ss_pred             eEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceee
Q 016507           79 IGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (388)
Q Consensus        79 ~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~  158 (388)
                      +|+|+++|++|++|++||||++.+.                             .                   .|+|+|
T Consensus        81 ~G~V~~vG~~v~~~~vGdrV~~~~~-----------------------------~-------------------~G~~ae  112 (364)
T 1gu7_A           81 LFEVIKVGSNVSSLEAGDWVIPSHV-----------------------------N-------------------FGTWRT  112 (364)
T ss_dssp             EEEEEEECTTCCSCCTTCEEEESSS-----------------------------C-------------------CCCSBS
T ss_pred             EEEEEEeCCCCCcCCCCCEEEecCC-----------------------------C-------------------CCcchh
Confidence            9999999999999999999975311                             1                   249999


Q ss_pred             eEEeecCceEEcCC-----------CCCccccccccchhhhhHHHHHHhcCCCCC-CEEEEEcc-chhHHHHHHHHHHcC
Q 016507          159 YTVLDIAHVVKVDP-----------TVPPNRACLLSCGVSTGVGAAWRTANVEVG-STVVIFGL-GSIGLAVAEGARLCG  225 (388)
Q Consensus       159 ~~~~~~~~~~~lP~-----------~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~-~~VlI~Ga-g~vG~~ai~la~~~g  225 (388)
                      |++++.++++++|+           ++++++||+++++++|||+++.+.+++++| ++|||+|+ |++|++++|+|+.+|
T Consensus       113 y~~v~~~~~~~~P~~~~~~~~~~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak~~G  192 (364)
T 1gu7_A          113 HALGNDDDFIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLN  192 (364)
T ss_dssp             EEEEEGGGEEEECCHHHHHHTTCSCCCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHT
T ss_pred             eEecCHHHeEEcCCccccccccccCCCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHHHCC
Confidence            99999999999998           899999999999999999988766789999 99999997 999999999999999


Q ss_pred             CcEEEEEcCCchH----HHHHHHcCCcEEEcCCCCCCccHHHHHHhhc--CC-CccEEEEccCCHHHHHHHHHHhhcCCc
Q 016507          226 ATRIIGVDVISEK----FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT--DG-GADYCFECVGLASLVQEAYACCRKGWG  298 (388)
Q Consensus       226 ~~~Vi~~~~~~~~----~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~--~g-~~dvvid~~g~~~~~~~~~~~l~~~~G  298 (388)
                      + +|+++.+++++    .++++++|+++++|+++....++.+.+++++  ++ ++|+||||+|+.. ...++++++++ |
T Consensus       193 a-~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g~Dvvid~~G~~~-~~~~~~~l~~~-G  269 (364)
T 1gu7_A          193 F-NSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNN-G  269 (364)
T ss_dssp             C-EEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTT-C
T ss_pred             C-EEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCCceEEEECCCchh-HHHHHHHhccC-C
Confidence            9 88888766554    6778899999999875200146788888887  45 8999999999987 45889999997 9


Q ss_pred             eEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCc------cCcHHHHHHHHhCCCCCCCcceeeeE-ecchHHHHH
Q 016507          299 KTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA------KSDIPILLKRYMDKELELDKFVTHEM-KFEEINSAF  371 (388)
Q Consensus       299 ~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~~~~A~  371 (388)
                      +++.+|... .....++...++.+++++.|++...+..      .++++++++++++|++++....+..+ +++++.+|+
T Consensus       270 ~~v~~g~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~l~~~~~A~  348 (364)
T 1gu7_A          270 LMLTYGGMS-FQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGKLTDAKSIETLYDGTKPLHELY  348 (364)
T ss_dssp             EEEECCCCS-SCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTCCCCCCCEEEECCSSSCHHHHH
T ss_pred             EEEEecCCC-CCCcccCHHHHhhcCcEEEEEchhHhcccCHHHHHHHHHHHHHHHHcCCcccccceEEecCchhhHHHHH
Confidence            999999753 3456678778888999999986543211      24688999999999888775544444 456999999


Q ss_pred             HHHhcCce-eEEEEee
Q 016507          372 DLLIKGKC-LRCVIWM  386 (388)
Q Consensus       372 ~~~~~~~~-~kvvv~~  386 (388)
                      +.+.+++. +|+||++
T Consensus       349 ~~~~~~~~~gKvvv~~  364 (364)
T 1gu7_A          349 QDGVANSKDGKQLITY  364 (364)
T ss_dssp             HHHHHTGGGSCEEEEC
T ss_pred             HHHHhCCCCceEEEeC
Confidence            99987754 6999875

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=100.00  E-value=8.8e-51  Score=382.45  Aligned_cols=315  Identities=21%  Similarity=0.273  Sum_probs=269.1

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCC-CC--CCCCcccccceeEEEEEecCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FP--AVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~--~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      |||+++.+++.+  ++++++|.|+|+++||||||.+++||++|++++.|.+ +.  ..+|.++|||++|+|+++|++|++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~p~i~G~e~~G~V~~vG~~v~~   81 (333)
T 1wly_A            2 VMAAVIHKKGGPDNFVWEEVKVGSPGPGQVRLRNTAIGVNFLDTYHRAGIPHPLVVGEPPIVVGFEAAAVVEEVGPGVTD   81 (333)
T ss_dssp             CEEEEESSCSSGGGEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHC----------CCEECCCEEEEEEEEECTTCCS
T ss_pred             cEEEEEcccCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHHhCCCcCCCCCCCCCccccceeEEEEEEECCCCCC
Confidence            899999988754  8889999999999999999999999999999999866 22  457999999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      |++||||+..+.                             .                   .|+|+||+.+|.++++++|
T Consensus        82 ~~~GdrV~~~~~-----------------------------~-------------------~G~~aey~~v~~~~~~~iP  113 (333)
T 1wly_A           82 FTVGERVCTCLP-----------------------------P-------------------LGAYSQERLYPAEKLIKVP  113 (333)
T ss_dssp             CCTTCEEEECSS-----------------------------S-------------------CCCSBSEEEEEGGGCEECC
T ss_pred             CCCCCEEEEecC-----------------------------C-------------------CCcceeEEEecHHHcEeCC
Confidence            999999964210                             0                   1499999999999999999


Q ss_pred             CCCCccc--cccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc
Q 016507          172 PTVPPNR--ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (388)
Q Consensus       172 ~~~~~~~--aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~  248 (388)
                      +++++++  ||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|++
T Consensus       114 ~~~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~~  192 (333)
T 1wly_A          114 KDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGCH  192 (333)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTCS
T ss_pred             CCCChHHhCccchhhhHHHHHHHHHHhhCCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCC
Confidence            9999999  99999999999998877889999999999996 9999999999999999 999999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHH-HHHhcC--c
Q 016507          249 EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF-EVLHSG--K  324 (388)
Q Consensus       249 ~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~--~  324 (388)
                      +++|.++   .++.+.+.+.+.+ ++|++|||+|+.. ++.++++++++ |+++.+|.... ....++.. .++.++  +
T Consensus       193 ~~~d~~~---~~~~~~i~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~  266 (333)
T 1wly_A          193 HTINYST---QDFAEVVREITGGKGVDVVYDSIGKDT-LQKSLDCLRPR-GMCAAYGHASG-VADPIRVVEDLGVRGSLF  266 (333)
T ss_dssp             EEEETTT---SCHHHHHHHHHTTCCEEEEEECSCTTT-HHHHHHTEEEE-EEEEECCCTTC-CCCCCCHHHHTTTTTSCE
T ss_pred             EEEECCC---HHHHHHHHHHhCCCCCeEEEECCcHHH-HHHHHHhhccC-CEEEEEecCCC-CcCCCChhHhhhhcCCcE
Confidence            9999877   7788888888876 8999999999954 89999999997 99999997532 23456766 677788  8


Q ss_pred             EEEEeeecCCCc----cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeCC
Q 016507          325 ILMGSLFGGLKA----KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       325 ~i~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                      ++.|++...+..    .++++++++++.+|++.  ++++++|||+++++|++.+.+++. +|+|+++++
T Consensus       267 ~i~g~~~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~~~  333 (333)
T 1wly_A          267 ITRPALWHYMSNRSEIDEGSKCLFDAVKAGVLH--SSVAKTFPLREAAAAHKYMGGRQTIGSIVLLPQA  333 (333)
T ss_dssp             EECCCGGGGSCSHHHHHHHHHHHHHHHHTTSCC--CCEEEEEEGGGHHHHHHHHHHCSCCSEEEEETTC
T ss_pred             EEEEeehhhccCHHHHHHHHHHHHHHHHCCCcC--CCcceEEeHHHHHHHHHHHHcCCCceEEEEEeCC
Confidence            998875422111    23688999999999764  568999999999999999988664 599999875

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=3.6e-50  Score=380.46  Aligned_cols=313  Identities=19%  Similarity=0.283  Sum_probs=267.9

Q ss_pred             CcceeeeeecCCCCC--eEE-EEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCC
Q 016507           14 PIQCRAAIATAPGEP--LVI-DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        14 ~~~~ka~~~~~~~~~--~~~-~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      +.+|||+++.+++.+  +++ +++|.|+|+++||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|++|
T Consensus        27 ~~~Mka~~~~~~g~~~~l~~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~v~G~E~~G~V~~vG~~v  106 (351)
T 1yb5_A           27 QKLMRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNA  106 (351)
T ss_dssp             -CEEEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTC
T ss_pred             cceEEEEEEccCCCcceeEEeeecCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcCCceeEEEEEEECCCC
Confidence            456999999988754  888 799999999999999999999999999999987643 4679999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      ++|++||||+..+.                             .                   .|+|+||+.++++++++
T Consensus       107 ~~~~vGdrV~~~~~-----------------------------~-------------------~G~~aey~~v~~~~~~~  138 (351)
T 1yb5_A          107 SAFKKGDRVFTSST-----------------------------I-------------------SGGYAEYALAADHTVYK  138 (351)
T ss_dssp             TTCCTTCEEEESCC-----------------------------S-------------------SCSSBSEEEEEGGGEEE
T ss_pred             CCCCCCCEEEEeCC-----------------------------C-------------------CCcceeEEEECHHHeEE
Confidence            99999999975311                             1                   14999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT  248 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~  248 (388)
                      +|+++++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.++++++|++
T Consensus       139 ~P~~l~~~~aA~l~~~~~ta~~al~~~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~  217 (351)
T 1yb5_A          139 LPEKLDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAH  217 (351)
T ss_dssp             CCTTSCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCS
T ss_pred             CCCCCCHHHHHhhhhHHHHHHHHHHHhhCCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCCC
Confidence            99999999999999999999998877889999999999997 9999999999999999 899999999999999999999


Q ss_pred             EEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEE
Q 016507          249 EFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  327 (388)
Q Consensus       249 ~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  327 (388)
                      .++|.++   .++.+.+.+.+++ ++|++|||+|... +..++++++++ |+++.+|..   ....++...++.+++++.
T Consensus       218 ~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~G~~~-~~~~~~~l~~~-G~iv~~g~~---~~~~~~~~~~~~~~~~i~  289 (351)
T 1yb5_A          218 EVFNHRE---VNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHG-GRVIVVGSR---GTIEINPRDTMAKESSII  289 (351)
T ss_dssp             EEEETTS---TTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEE-EEEEECCCC---SCEEECTHHHHTTTCEEE
T ss_pred             EEEeCCC---chHHHHHHHHcCCCCcEEEEECCChHH-HHHHHHhccCC-CEEEEEecC---CCCccCHHHHHhCCcEEE
Confidence            9999887   6788888888877 8999999999875 88999999997 999999963   234567777788999999


Q ss_pred             EeeecCCCccCcH----HHHHHHHhCCCCCCCcceeeeEecchHHHHHHH-HhcCc-eeEEEEee
Q 016507          328 GSLFGGLKAKSDI----PILLKRYMDKELELDKFVTHEMKFEEINSAFDL-LIKGK-CLRCVIWM  386 (388)
Q Consensus       328 g~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~-~~~~~-~~kvvv~~  386 (388)
                      |+.+..+. .+++    +.+.+++.+|++  .++++++|||+++++|++. ++++. .+|+||++
T Consensus       290 g~~~~~~~-~~~~~~~~~~l~~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~~gKvvi~~  351 (351)
T 1yb5_A          290 GVTLFSST-KEEFQQYAAALQAGMEIGWL--KPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  351 (351)
T ss_dssp             ECCGGGCC-HHHHHHHHHHHHHHHHHTCC--CCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             EEEeecCC-HHHHHHHHHHHHHHHHCCCc--cCccceEEcHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            98653321 2233    345567778854  5668999999999999998 55544 46999874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=4.2e-50  Score=376.98  Aligned_cols=313  Identities=16%  Similarity=0.195  Sum_probs=269.0

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      |||+++.+++.+  ++++++|.|+|+++||||||.+++||++|++.+.|.++...+|.++|||++|+|+++|++|++|++
T Consensus         2 Mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~p~v~G~E~~G~V~~vG~~v~~~~~   81 (327)
T 1qor_A            2 ATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKA   81 (327)
T ss_dssp             CEEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCT
T ss_pred             cEEEEEcCCCChhheEEeccCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCCCceeEEEEEEECCCCCCCCC
Confidence            899999988754  888999999999999999999999999999999987755568999999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      ||||...                            | ..                   .|+|+||+.+|.++++++|+++
T Consensus        82 GdrV~~~----------------------------g-~~-------------------~G~~aey~~v~~~~~~~iP~~l  113 (327)
T 1qor_A           82 GDRVVYA----------------------------Q-SA-------------------LGAYSSVHNIIADKAAILPAAI  113 (327)
T ss_dssp             TCEEEES----------------------------C-CS-------------------SCCSBSEEEEEGGGEEECCTTS
T ss_pred             CCEEEEC----------------------------C-CC-------------------CceeeeEEEecHHHcEECCCCC
Confidence            9999421                            0 00                   1499999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      ++++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.++++|+++++|.
T Consensus       114 ~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~~~~~~~  192 (327)
T 1qor_A          114 SFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVINY  192 (327)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEET
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCCCEEEEC
Confidence            999999999999999998877889999999999995 9999999999999999 99999999999999999999999998


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhc-CcEEEEeee
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLF  331 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~i~g~~~  331 (388)
                      .+   .++.+.+.+.+.+ ++|++|||+|. ..++.++++++++ |+++.+|.... ....++...++.+ .+.+.+...
T Consensus       193 ~~---~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~  266 (327)
T 1qor_A          193 RE---EDLVERLKEITGGKKVRVVYDSVGR-DTWERSLDCLQRR-GLMVSFGNSSG-AVTGVNLGILNQKGSLYVTRPSL  266 (327)
T ss_dssp             TT---SCHHHHHHHHTTTCCEEEEEECSCG-GGHHHHHHTEEEE-EEEEECCCTTC-CCCCBCTHHHHHTTSCEEECCCH
T ss_pred             CC---ccHHHHHHHHhCCCCceEEEECCch-HHHHHHHHHhcCC-CEEEEEecCCC-CCCccCHHHHhhccceEEEccch
Confidence            77   7788888888876 89999999995 4499999999997 99999997532 2345677777777 788776543


Q ss_pred             cCCC-----ccCcHHHHHHHHhCCCCCCCccee--eeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          332 GGLK-----AKSDIPILLKRYMDKELELDKFVT--HEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       332 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~i~--~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ..+.     ..++++++++++++|++.+  +++  ++|||+++++|++.++++.. +|+||++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~i~~~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  327 (327)
T 1qor_A          267 QGYITTREELTEASNELFSLIASGVIKV--DVAEQQKYPLKDAQRAHEILESRATQGSSLLIP  327 (327)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHHHTTSSCC--CCCGGGEEEGGGHHHHHHHHHTTCCCBCCEEEC
T ss_pred             hhhcCCHHHHHHHHHHHHHHHHCCCccc--ccccCcEEcHHHHHHHHHHHHhCCCCceEEEeC
Confidence            2221     1345789999999997654  588  89999999999999988764 6999864

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=100.00  E-value=8.8e-50  Score=379.48  Aligned_cols=317  Identities=20%  Similarity=0.201  Sum_probs=269.3

Q ss_pred             CCcceeeeeecCCCC----CeEE-EEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEec
Q 016507           13 KPIQCRAAIATAPGE----PLVI-DEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVG   86 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~----~~~~-~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG   86 (388)
                      .+.+|||+++.+++.    .+++ +++|.|+|+++||||||.+++||++|++++.|.++. ..+|.++|||++|+|+++|
T Consensus        20 ~~~~MkA~~~~~~g~~~~~~l~~~~~~p~P~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~P~i~G~E~~G~V~~vG   99 (362)
T 2c0c_A           20 FQSMMQKLVVTRLSPNFREAVTLSRDCPVPLPGDGDLLVRNRFVGVNASDINYSAGRYDPSVKPPFDIGFEGIGEVVALG   99 (362)
T ss_dssp             HCCEEEEEEECSCCSSHHHHEEEEEEEECCCCCTTEEEEEEEEEECCTTHHHHHTTTTCTTCCSCEECCSEEEEEEEEEC
T ss_pred             chhhceEEEEeecCCCccceeEEEeecCCCCCCCCeEEEEEEEeccCHHHHHHhcCCCCCCCCCCCCCCceeEEEEEEEC
Confidence            456799999999874    3888 999999999999999999999999999999987643 4679999999999999999


Q ss_pred             CCCC-CCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecC
Q 016507           87 ENVD-GVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (388)
Q Consensus        87 ~~v~-~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~  165 (388)
                      ++|+ +|++||||+...                                                  .|+|+||+.++.+
T Consensus       100 ~~V~~~~~vGdrV~~~~--------------------------------------------------~G~~aey~~v~~~  129 (362)
T 2c0c_A          100 LSASARYTVGQAVAYMA--------------------------------------------------PGSFAEYTVVPAS  129 (362)
T ss_dssp             TTGGGTCCTTCEEEEEC--------------------------------------------------SCCSBSEEEEEGG
T ss_pred             CCccCCCCCCCEEEEcc--------------------------------------------------CCcceeEEEEcHH
Confidence            9999 999999997421                                                  2499999999999


Q ss_pred             ceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       166 ~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      +++++|+. + .++|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.+++++
T Consensus       130 ~~~~~P~~-~-~~aaal~~~~~ta~~al~~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          130 IATPVPSV-K-PEYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             GCEECSSS-C-HHHHTTTTHHHHHHHHHHHHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             HeEECCCC-c-hHhhcccchHHHHHHHHHHhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHH
Confidence            99999996 3 4677888899999999888889999999999995 9999999999999999 89999999999999999


Q ss_pred             cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCc-c--------ccC
Q 016507          245 FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQ-L--------SLS  315 (388)
Q Consensus       245 lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~-~--------~~~  315 (388)
                      +|+++++|+++   .++.+.+++.+++++|+||||+|... ++.++++++++ |+++.+|....... .        .+ 
T Consensus       207 ~Ga~~~~~~~~---~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~-G~iv~~g~~~~~~~~~~~~~~~~~~~-  280 (362)
T 2c0c_A          207 LGCDRPINYKT---EPVGTVLKQEYPEGVDVVYESVGGAM-FDLAVDALATK-GRLIVIGFISGYQTPTGLSPVKAGTL-  280 (362)
T ss_dssp             TTCSEEEETTT---SCHHHHHHHHCTTCEEEEEECSCTHH-HHHHHHHEEEE-EEEEECCCGGGTTSSSCCCCCCCTTH-
T ss_pred             cCCcEEEecCC---hhHHHHHHHhcCCCCCEEEECCCHHH-HHHHHHHHhcC-CEEEEEeCCCCcCccccccccccccc-
Confidence            99999999887   67888888877558999999999864 89999999997 99999997432110 0        22 


Q ss_pred             HHHHHhcCcEEEEeeecCCC--ccCcHHHHHHHHhCCCCCCCcc------eeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          316 SFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKF------VTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       316 ~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ...++.+++++.|++...+.  ..++++++++++++|++++...      +++.|||+++++|++.++++.. +|+||++
T Consensus       281 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  360 (362)
T 2c0c_A          281 PAKLLKKSASVQGFFLNHYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESIFRAVNYMYMGKNTGKIVVEL  360 (362)
T ss_dssp             HHHHHHHTCEEEECCGGGCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHHHHHHHHHHTTCCSBEEEEEC
T ss_pred             HHHHHhhcceEEEEEhhhhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHHHHHHHHHHcCCCCceEEEEc
Confidence            24567789999998754432  2346889999999998876533      3467899999999999988764 6999998


Q ss_pred             CC
Q 016507          387 GE  388 (388)
Q Consensus       387 ~~  388 (388)
                      +|
T Consensus       361 ~~  362 (362)
T 2c0c_A          361 PH  362 (362)
T ss_dssp             CC
T ss_pred             CC
Confidence            75

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=100.00  E-value=3.9e-51  Score=383.52  Aligned_cols=313  Identities=15%  Similarity=0.099  Sum_probs=264.9

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++++++++  ++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++|  +++|+
T Consensus         1 MkA~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~G--v~~~~   78 (324)
T 3nx4_A            1 MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDALAITGKGKIIRHFPMIPGIDFAGTVHASE--DPRFH   78 (324)
T ss_dssp             CEEEEEEESSSSEEEEEEECCGGGSCCCSEEEEEEEEEECHHHHHHHHTCTTCCCSSSBCCCSEEEEEEEEES--STTCC
T ss_pred             CceEEEecCCCCceeeEeecCCCCCCCCEEEEEEEEEeCCHHHHhhhcCCCCCCCCCCccccceeEEEEEEeC--CCCCC
Confidence            899999999976  888999999999999999999999999999999997754 5789999999999999998  57899


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||||++.+.                        ..|...+|                   +|+||+.+|.++++++|++
T Consensus        79 vGdrV~~~~~------------------------~~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  115 (324)
T 3nx4_A           79 AGQEVLLTGW------------------------GVGENHWG-------------------GLAERARVKGDWLVALPAG  115 (324)
T ss_dssp             TTCEEEEECT------------------------TBTTTBCC-------------------SSBSEEEECGGGCEECCTT
T ss_pred             CCCEEEEccc------------------------ccCCCCCC-------------------ceeeEEecCHHHcEECCCC
Confidence            9999986421                        02333334                   9999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHH--HhcCCCCCC-EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          174 VPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +++++||++++.+.|||.++.  ...++++++ +|||+|+ |++|++++|+|+.+|+ +|+++++++++.++++++|+++
T Consensus       116 ~~~~~aa~l~~~~~ta~~al~~~~~~~~~~~~g~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~  194 (324)
T 3nx4_A          116 LSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGANR  194 (324)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHhhhcccCCCCCeEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCCE
Confidence            999999999999999998875  345566633 4999997 9999999999999999 9999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      ++|+++   .+.   +++++++++|++|||+|++. ++.++++++++ |+++.+|... ....+++...++.+++++.|+
T Consensus       195 vi~~~~---~~~---~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~~~g~  265 (324)
T 3nx4_A          195 ILSRDE---FAE---SRPLEKQLWAGAIDTVGDKV-LAKVLAQMNYG-GCVAACGLAG-GFALPTTVMPFILRNVRLQGV  265 (324)
T ss_dssp             EEEGGG---SSC---CCSSCCCCEEEEEESSCHHH-HHHHHHTEEEE-EEEEECCCTT-CSEEEEESHHHHHHCCEEEEC
T ss_pred             EEecCC---HHH---HHhhcCCCccEEEECCCcHH-HHHHHHHHhcC-CEEEEEecCC-CCCCCCCHHHHhhcCeEEEEE
Confidence            999876   322   45556569999999999874 99999999997 9999999753 334566777788899999998


Q ss_pred             eecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          330 LFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       330 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      +...+..   .+.++++++++++|++.  ++ +++|||+++++|++.+++++. +|+||+++
T Consensus       266 ~~~~~~~~~~~~~~~~~~~l~~~g~l~--~~-~~~~~l~~~~~A~~~~~~~~~~gkvvv~~~  324 (324)
T 3nx4_A          266 DSVMTPPARRAEAWARLVKDLPESFYA--QA-ATEITLADAPKFADAIINNQVQGRTLVKIK  324 (324)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHSCHHHHH--HH-EEEEEGGGHHHHHHHHHTTCCCSEEEEECC
T ss_pred             eccccChHHHHHHHHHHHHHHHcCCCC--CC-ceeEeHHHHHHHHHHHHhCCCCceEEEecC
Confidence            6543321   24577888999888654  44 899999999999999998876 59999874

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=100.00  E-value=4.8e-50  Score=377.05  Aligned_cols=319  Identities=17%  Similarity=0.184  Sum_probs=258.2

Q ss_pred             CCcceeeeeecCCCC--CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCC
Q 016507           13 KPIQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      |+++|||+++.+++.  .++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++  ++
T Consensus         1 m~~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~E~~G~V~~~--~v   78 (330)
T 1tt7_A            1 MSTLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVSS--ND   78 (330)
T ss_dssp             -CCEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEEC--SS
T ss_pred             CCCcceEEEEecCCCCcceeEeecCCCCCCCCEEEEEEEEEecCHHHHhhhcCCCCCcCCCCccccceEEEEEEEc--CC
Confidence            356799999999872  4899999999999999999999999999999999886543 357999999999999996  46


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      ++|++||||++.+.                        .+|...+                   |+|+||+.++++++++
T Consensus        79 ~~~~vGdrV~~~~~------------------------~~g~~~~-------------------G~~aey~~v~~~~~~~  115 (330)
T 1tt7_A           79 PRFAEGDEVIATSY------------------------ELGVSRD-------------------GGLSEYASVPGDWLVP  115 (330)
T ss_dssp             TTCCTTCEEEEEST------------------------TBTTTBC-------------------CSSBSSEEECGGGEEE
T ss_pred             CCCCCCCEEEEccc------------------------ccCCCCC-------------------ccceeEEEecHHHeEE
Confidence            88999999986421                        0222223                   4999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHH--HhcCCCCCC-EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF  245 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l  245 (388)
                      +|+++++++||++++++.|||.++.  ..+++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++
T Consensus       116 iP~~l~~~~aa~l~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~l  194 (330)
T 1tt7_A          116 LPQNLSLKEAMVYGTAGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQL  194 (330)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHH
T ss_pred             CCCCCCHHHHhhccchHHHHHHHHHHHHhcCcCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc
Confidence            9999999999999999999998764  346788986 9999997 9999999999999999 899999999999999999


Q ss_pred             CCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcE
Q 016507          246 GVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKI  325 (388)
Q Consensus       246 ga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~  325 (388)
                      |+++++|+++   .+ .+.+++.+++++|++|||+|+. .+..++++++++ |+++.+|... .....++...++.++++
T Consensus       195 Ga~~v~~~~~---~~-~~~~~~~~~~~~d~vid~~g~~-~~~~~~~~l~~~-G~iv~~G~~~-~~~~~~~~~~~~~~~~~  267 (330)
T 1tt7_A          195 GASEVISRED---VY-DGTLKALSKQQWQGAVDPVGGK-QLASLLSKIQYG-GSVAVSGLTG-GGEVPATVYPFILRGVS  267 (330)
T ss_dssp             TCSEEEEHHH---HC-SSCCCSSCCCCEEEEEESCCTH-HHHHHHTTEEEE-EEEEECCCSS-CSCEEECSHHHHTSCCE
T ss_pred             CCcEEEECCC---ch-HHHHHHhhcCCccEEEECCcHH-HHHHHHHhhcCC-CEEEEEecCC-CCccCcchHHHHhcCeE
Confidence            9999998654   21 1123334444899999999996 499999999997 9999999753 33456676777889999


Q ss_pred             EEEeeecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          326 LMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       326 i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      +.|++...+..   .+.++++++++.+|++  +++++++|||+++++|++.+++++. +|+||++
T Consensus       268 i~g~~~~~~~~~~~~~~~~~~~~~~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  330 (330)
T 1tt7_A          268 LLGIDSVYCPMDVRAAVWERMSSDLKPDQL--LTIVDREVSLEETPGALKDILQNRIQGRVIVKL  330 (330)
T ss_dssp             EEECCSSSCCHHHHHHHHHHTTTTSCCSCS--TTSEEEEECSTTHHHHHHHTTTTCCSSEEEECC
T ss_pred             EEEEeccccCHHHHHHHHHHHHHHHhcCCc--ccccceEEcHHHHHHHHHHHHcCCCCCeEEEeC
Confidence            99985322211   1234555566666754  5668899999999999999987764 5999864

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=100.00  E-value=3.5e-48  Score=365.27  Aligned_cols=309  Identities=18%  Similarity=0.170  Sum_probs=264.4

Q ss_pred             cceeeeeecC------CCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccc----eeEEEEE
Q 016507           15 IQCRAAIATA------PGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE----AIGVVES   84 (388)
Q Consensus        15 ~~~ka~~~~~------~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e----~~G~Vv~   84 (388)
                      ++|||+++..      ..+.++++++|.|+|+++||||||.+++||++|++.+.+... ..+|.++|||    ++|+|++
T Consensus         6 ~~mka~v~~~~~~g~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~d~~~~~~~~~-~~~p~~~G~e~g~~~~G~V~~   84 (336)
T 4b7c_A            6 QINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARS-YIPPVGIGEVMRALGVGKVLV   84 (336)
T ss_dssp             CEEEEEEECSCCSSSCCTTSEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHHSCSCC-SSCCCCTTSBCCCEEEEEEEE
T ss_pred             ccccEEEEEecCCCCCCCCceEEEeccCCCCCCCEEEEEEEEEEeCHHHHhhhhcccc-cCCCCCCCcccCCceEEEEEe
Confidence            5699999985      123399999999999999999999999999999988776432 2457777887    7999999


Q ss_pred             ecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 016507           85 VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (388)
Q Consensus        85 vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~  164 (388)
                      .  ++++|++||||+..                                                    |+|+||+.+|.
T Consensus        85 ~--~v~~~~vGdrV~~~----------------------------------------------------G~~aey~~v~~  110 (336)
T 4b7c_A           85 S--KHPGFQAGDYVNGA----------------------------------------------------LGVQDYFIGEP  110 (336)
T ss_dssp             E--CSTTCCTTCEEEEE----------------------------------------------------CCSBSEEEECC
T ss_pred             c--CCCCCCCCCEEecc----------------------------------------------------CCceEEEEech
Confidence            4  58899999999742                                                    49999999999


Q ss_pred             CceEEcCCCCCcccc--ccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH
Q 016507          165 AHVVKVDPTVPPNRA--CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI  241 (388)
Q Consensus       165 ~~~~~lP~~~~~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~  241 (388)
                      ++++++|+++++.++  |+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+.
T Consensus       111 ~~~~~~P~~~~~~~~a~a~l~~~~~tA~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~  189 (336)
T 4b7c_A          111 KGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRF  189 (336)
T ss_dssp             TTCEEECTTTSCGGGGGTTTSHHHHHHHHHHHHTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHH
T ss_pred             HHeEEcCCCCCchHHHhhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHH
Confidence            999999999988776  7899999999999888899999999999998 9999999999999999 99999999999999


Q ss_pred             H-HHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCC-----CCccccC
Q 016507          242 G-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP-----GSQLSLS  315 (388)
Q Consensus       242 ~-~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~-----~~~~~~~  315 (388)
                      + +++|+++++|+++   .++.+.+.+.+++++|++|||+|+.. +..++++++++ |+++.+|....     .....++
T Consensus       190 ~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~~  264 (336)
T 4b7c_A          190 LVEELGFDGAIDYKN---EDLAAGLKRECPKGIDVFFDNVGGEI-LDTVLTRIAFK-ARIVLCGAISQYNNKEAVRGPAN  264 (336)
T ss_dssp             HHHTTCCSEEEETTT---SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EEEEECCCGGGGC------CCTT
T ss_pred             HHHHcCCCEEEECCC---HHHHHHHHHhcCCCceEEEECCCcch-HHHHHHHHhhC-CEEEEEeecccccCCcccccchh
Confidence            9 8999999999888   78999999988669999999999864 99999999997 99999997531     1123566


Q ss_pred             HHHHHhcCcEEEEeeecCCCc--cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          316 SFEVLHSGKILMGSLFGGLKA--KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       316 ~~~~~~~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ...++.+++++.|++...+..  .++++++++++++|++++.  +..+|||+++++|++.+.+++. +|+||++
T Consensus       265 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~~gKvvi~~  336 (336)
T 4b7c_A          265 YLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAEGKLQSR--EDIVEGLETFPETLLKLFSGENFGKLVLKV  336 (336)
T ss_dssp             TTHHHHTTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSCCC--EEEEECGGGHHHHHHHHHTTCCCSEEEEEC
T ss_pred             HHHHHhCCcEEEEEEhhhhhhhhHHHHHHHHHHHHCCCcccc--eeeecCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            677888999999997654321  2568899999999987766  4556899999999999998775 5999975

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=100.00  E-value=2.4e-48  Score=371.53  Aligned_cols=317  Identities=18%  Similarity=0.211  Sum_probs=257.5

Q ss_pred             CCCCcceeeeeecCCCCC--eEE-EEeecCCC-CCCeEEEEEceeccCcccccccccCCC-------------C--CCCC
Q 016507           11 AGKPIQCRAAIATAPGEP--LVI-DEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF-------------P--AVFP   71 (388)
Q Consensus        11 ~~~~~~~ka~~~~~~~~~--~~~-~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~-------------~--~~~p   71 (388)
                      +.++++|||+++.+++.+  +++ +++|.|+| +++||||||.|++||++|++++.|..+             .  ..+|
T Consensus        16 ~~~~~~mka~~~~~~g~~~~l~~~~~~p~P~~~~~~eVlVkv~a~gi~~~D~~~~~G~~~~~~~~~~~~~~~~~~~~~~P   95 (375)
T 2vn8_A           16 ENLYFQSMAWVIDKYGKNEVLRFTQNMMMPIIHYPNEVIVKVHAASVNPIDVNMRSGYGATALNMKRDPLHVKIKGEEFP   95 (375)
T ss_dssp             --CCCCEEEEEBSSCCSGGGCEEEEEECCCCCCSTTEEEEEEEEEEECHHHHHHHTTTTHHHHHHHHCTTCCSCTTTTCS
T ss_pred             cccCccceeEEeccCCCccceEEeccccCCCCCCCCEEEEEEEEEEcCHHHHHHhccCccccccccccccccccccccCC
Confidence            456788999999998754  888 89999985 999999999999999999999987531             1  2379


Q ss_pred             cccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccc
Q 016507           72 RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFV  151 (388)
Q Consensus        72 ~v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~  151 (388)
                      .++|||++|+|+++|++|++|++||||++.+.                           ...+                 
T Consensus        96 ~v~G~E~~G~V~~vG~~V~~~~vGDrV~~~~~---------------------------~~~~-----------------  131 (375)
T 2vn8_A           96 LTLGRDVSGVVMECGLDVKYFKPGDEVWAAVP---------------------------PWKQ-----------------  131 (375)
T ss_dssp             BCCCCEEEEEEEEECTTCCSCCTTCEEEEECC---------------------------TTSC-----------------
T ss_pred             cccceeeeEEEEEeCCCCCCCCCCCEEEEecC---------------------------CCCC-----------------
Confidence            99999999999999999999999999986421                           1112                 


Q ss_pred             cccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcC----CCCCCEEEEEcc-chhHHHHHHHHHHcCC
Q 016507          152 SVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN----VEVGSTVVIFGL-GSIGLAVAEGARLCGA  226 (388)
Q Consensus       152 ~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~----~~~~~~VlI~Ga-g~vG~~ai~la~~~g~  226 (388)
                        |+|+||+.+++++++++|+++++++||+++++++|||+++.+.++    +++|++|||+|+ |++|++++|+|+..|+
T Consensus       132 --G~~aey~~v~~~~~~~iP~~ls~~~Aa~l~~~~~tA~~al~~~~~~~~~~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga  209 (375)
T 2vn8_A          132 --GTLSEFVVVSGNEVSHKPKSLTHTQAASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDA  209 (375)
T ss_dssp             --CSSBSEEEEEGGGEEECCTTSCHHHHTTSHHHHHHHHHHHTTTTCCCTTTCTTCEEEEETTTSHHHHHHHHHHHHTTC
T ss_pred             --ccceeEEEEcHHHeeeCCCCCCHHHHhhhHHHHHHHHHHHHHhcccccccCCCCEEEEECCCCHHHHHHHHHHHhCCC
Confidence              499999999999999999999999999999999999998877788    899999999995 9999999999999999


Q ss_pred             cEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          227 TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       227 ~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       +|++++ ++++.++++++|+++++|+++   .++.+.+.+.  +++|+||||+|+. ..+..++++++++ |+++.+|.
T Consensus       210 -~Vi~~~-~~~~~~~~~~lGa~~v~~~~~---~~~~~~~~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~-G~iv~~g~  281 (375)
T 2vn8_A          210 -HVTAVC-SQDASELVRKLGADDVIDYKS---GSVEEQLKSL--KPFDFILDNVGGSTETWAPDFLKKWSG-ATYVTLVT  281 (375)
T ss_dssp             -EEEEEE-CGGGHHHHHHTTCSEEEETTS---SCHHHHHHTS--CCBSEEEESSCTTHHHHGGGGBCSSSC-CEEEESCC
T ss_pred             -EEEEEe-ChHHHHHHHHcCCCEEEECCc---hHHHHHHhhc--CCCCEEEECCCChhhhhHHHHHhhcCC-cEEEEeCC
Confidence             899988 678899999999999999887   6777777653  4899999999998 4568899999997 99999986


Q ss_pred             CCCCCccc---cCH------HHHHh-------cCcEEEEeeecCCCccCcHHHHHHHHhCCCCCCCcceeeeEecchHHH
Q 016507          306 DQPGSQLS---LSS------FEVLH-------SGKILMGSLFGGLKAKSDIPILLKRYMDKELELDKFVTHEMKFEEINS  369 (388)
Q Consensus       306 ~~~~~~~~---~~~------~~~~~-------~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~  369 (388)
                      ... ....   ++.      ..++.       ++..+.+...  ....++++++++++++|++  +++++++|||+++++
T Consensus       282 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~  356 (375)
T 2vn8_A          282 PFL-LNMDRLGIADGMLQTGVTVGSKALKHFWKGVHYRWAFF--MASGPCLDDIAELVDAGKI--RPVIEQTFPFSKVPE  356 (375)
T ss_dssp             SHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEEEECCC--CCCHHHHHHHHHHHHTTSC--CCCEEEEEEGGGHHH
T ss_pred             Ccc-cccccccccchhheeehhhccccccccccCcceEEEEe--CCCHHHHHHHHHHHHCCCc--ccCcCeEECHHHHHH
Confidence            321 1110   111      11222       3444443321  1123567999999999976  466889999999999


Q ss_pred             HHHHHhcCce-eEEEEee
Q 016507          370 AFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       370 A~~~~~~~~~-~kvvv~~  386 (388)
                      |++.++++.. +|+||++
T Consensus       357 A~~~~~~~~~~gKvvi~~  374 (375)
T 2vn8_A          357 AFLKVERGHARGKTVINV  374 (375)
T ss_dssp             HHHHHHHCCCSSEEEEEC
T ss_pred             HHHHHHcCCCCCeEEEEe
Confidence            9999988764 6999976

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=100.00  E-value=8.3e-49  Score=368.30  Aligned_cols=316  Identities=16%  Similarity=0.165  Sum_probs=252.7

Q ss_pred             cceeeeeecCCCC--CeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCC
Q 016507           15 IQCRAAIATAPGE--PLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        15 ~~~ka~~~~~~~~--~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      .+|||+++.+++.  .++++++|.|+|+++||||||.+++||++|++.+.|.++. ..+|.++|||++|+|+++  ++++
T Consensus         2 ~~mka~~~~~~g~~~~l~~~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~v~G~E~~G~V~~~--~v~~   79 (328)
T 1xa0_A            2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVSS--QHPR   79 (328)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEEC--CSSS
T ss_pred             CcceEEEEecCCCcceeEEEeccCCCCCCCeEEEEEEEEecCHHHHHhhcCCCCCCCCCCcccCcceEEEEEec--CCCC
Confidence            4699999999874  3888999999999999999999999999999999886542 357999999999999996  5689


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      |++||||++.+.                        .+|...+                   |+|+||+.+|+++++++|
T Consensus        80 ~~vGdrV~~~~~------------------------~~g~~~~-------------------G~~aey~~v~~~~~~~~P  116 (328)
T 1xa0_A           80 FREGDEVIATGY------------------------EIGVTHF-------------------GGYSEYARLHGEWLVPLP  116 (328)
T ss_dssp             CCTTCEEEEEST------------------------TBTTTBC-------------------CSSBSEEEECGGGCEECC
T ss_pred             CCCCCEEEEccc------------------------cCCCCCC-------------------ccceeEEEechHHeEECC
Confidence            999999986421                        0222223                   499999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHH--HhcCCCCCC-EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAW--RTANVEVGS-TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~--~~~~~~~~~-~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      +++++++||++++++.|||.++.  +.+++++|+ +|||+|+ |++|++++|+|+.+|+ +|++++++++++++++++|+
T Consensus       117 ~~l~~~~aa~~~~~~~ta~~~l~~~~~~~~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa  195 (328)
T 1xa0_A          117 KGLTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGA  195 (328)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTC
T ss_pred             CCCCHHHhhhhhhhHHHHHHHHHHHhhcCCCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC
Confidence            99999999999999999998764  346788986 9999997 9999999999999999 89999999999999999999


Q ss_pred             cEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEE
Q 016507          248 TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILM  327 (388)
Q Consensus       248 ~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~  327 (388)
                      ++++|+++   .+ .+.+++.+++++|+||||+|+.. +..++++++++ |+++.+|... .....++...++.+++++.
T Consensus       196 ~~~i~~~~---~~-~~~~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~-G~~v~~G~~~-~~~~~~~~~~~~~~~~~i~  268 (328)
T 1xa0_A          196 KEVLARED---VM-AERIRPLDKQRWAAAVDPVGGRT-LATVLSRMRYG-GAVAVSGLTG-GAEVPTTVHPFILRGVSLL  268 (328)
T ss_dssp             SEEEECC-------------CCSCCEEEEEECSTTTT-HHHHHHTEEEE-EEEEECSCCS-SSCCCCCSHHHHHTTCEEE
T ss_pred             cEEEecCC---cH-HHHHHHhcCCcccEEEECCcHHH-HHHHHHhhccC-CEEEEEeecC-CCCCCCchhhhhhcCceEE
Confidence            99999876   32 33445555458999999999964 89999999997 9999999753 2344566667788999999


Q ss_pred             EeeecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          328 GSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       328 g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      |+....+..   .+.++.+++++.++ +  ++ ++++|||+++++|++.+++++. +|+||+++
T Consensus       269 g~~~~~~~~~~~~~~~~~~~~~~~~g-l--~~-~~~~~~l~~~~~A~~~~~~~~~~gKvvv~~~  328 (328)
T 1xa0_A          269 GIDSVYCPMDLRLRIWERLAGDLKPD-L--ER-IAQEISLAELPQALKRILRGELRGRTVVRLA  328 (328)
T ss_dssp             ECCSSSCCHHHHHHHHHHHHTTTCCC-H--HH-HEEEEEGGGHHHHHHHHHHTCCCSEEEEECC
T ss_pred             EEecccCCHHHHHHHHHHHHHHHHcC-C--ce-eeeEeCHHHHHHHHHHHHcCCCCCeEEEEeC
Confidence            985322211   12345555555555 3  33 4699999999999999987764 69999864

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=100.00  E-value=2.2e-47  Score=362.64  Aligned_cols=317  Identities=18%  Similarity=0.239  Sum_probs=264.3

Q ss_pred             CCCCcceeeeee-cCC---CC----CeEEEEeecCCC-CCCeEEEEEceeccCccccccccc----CCC-CCCCCccccc
Q 016507           11 AGKPIQCRAAIA-TAP---GE----PLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKM----KDF-PAVFPRILGH   76 (388)
Q Consensus        11 ~~~~~~~ka~~~-~~~---~~----~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g----~~~-~~~~p~v~G~   76 (388)
                      .++|++|||+++ ..+   +.    .++++++|.|+| +++||||||.+++||++|++.+.+    .+. +..+|.++||
T Consensus         3 ~~~~~~mka~v~~~~~~~~g~p~~~~l~~~~~~~P~~~~~~eVlVkv~a~gi~~~D~~~~~~~~g~~~~~~~~~p~v~G~   82 (357)
T 2zb4_A            3 AAAAMIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQLSQVVDG   82 (357)
T ss_dssp             ---CCEEEEEEECCCCCTTSCCCGGGEEEEEEECCSCCCTTEEEEEEEEEECCTTHHHHTSSSCSSSSSCCCCBTSBCEE
T ss_pred             CcccccceEEEEeccCCCCCCCCcCceEEEeecCCCCCCCCeEEEEEEEEecCHHHHhhccccccccccCCCCCCccccc
Confidence            457889999999 565   43    399999999999 999999999999999999987775    232 3467899999


Q ss_pred             ceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccce
Q 016507           77 EAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSF  156 (388)
Q Consensus        77 e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~  156 (388)
                      |++|+|++  ++|++|++||||++.                                                   .|+|
T Consensus        83 E~~G~V~~--~~v~~~~vGdrV~~~---------------------------------------------------~G~~  109 (357)
T 2zb4_A           83 GGIGIIEE--SKHTNLTKGDFVTSF---------------------------------------------------YWPW  109 (357)
T ss_dssp             EEEEEEEE--ECSTTCCTTCEEEEE---------------------------------------------------EEES
T ss_pred             cEEEEEEe--cCCCCCCCCCEEEec---------------------------------------------------CCCc
Confidence            99999999  889999999999742                                                   1499


Q ss_pred             eeeEEeecCceEEcCCCC-----CccccccccchhhhhHHHHHHhcCCCCC--CEEEEEcc-chhHHHHHHHHHHcCCcE
Q 016507          157 SEYTVLDIAHVVKVDPTV-----PPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATR  228 (388)
Q Consensus       157 a~~~~~~~~~~~~lP~~~-----~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~VlI~Ga-g~vG~~ai~la~~~g~~~  228 (388)
                      +||++++.++++++|+++     +++ +|+++++++|||+++.+.+++++|  ++|||+|+ |++|++++|+++..|+++
T Consensus       110 aey~~v~~~~~~~iP~~~~~~~~~~~-~a~l~~~~~ta~~al~~~~~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~  188 (357)
T 2zb4_A          110 QTKVILDGNSLEKVDPQLVDGHLSYF-LGAIGMPGLTSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSR  188 (357)
T ss_dssp             BSEEEEEGGGCEECCGGGGTTCGGGG-GTTTSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSE
T ss_pred             EEEEEEchHHceecCcccccCchhHH-HHhcccHHHHHHHHHHHhcCCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCe
Confidence            999999999999999999     555 778888999999988788999999  99999997 999999999999999878


Q ss_pred             EEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCC
Q 016507          229 IIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       229 Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      |+++++++++.+.+++ +|+++++|.++   .++.+.+.+.+.+++|++|||+|+.. +..++++++++ |+++.+|...
T Consensus       189 Vi~~~~~~~~~~~~~~~~g~~~~~d~~~---~~~~~~~~~~~~~~~d~vi~~~G~~~-~~~~~~~l~~~-G~iv~~G~~~  263 (357)
T 2zb4_A          189 VVGICGTHEKCILLTSELGFDAAINYKK---DNVAEQLRESCPAGVDVYFDNVGGNI-SDTVISQMNEN-SHIILCGQIS  263 (357)
T ss_dssp             EEEEESCHHHHHHHHHTSCCSEEEETTT---SCHHHHHHHHCTTCEEEEEESCCHHH-HHHHHHTEEEE-EEEEECCCGG
T ss_pred             EEEEeCCHHHHHHHHHHcCCceEEecCc---hHHHHHHHHhcCCCCCEEEECCCHHH-HHHHHHHhccC-cEEEEECCcc
Confidence            9999999999998887 99999999887   77888888887668999999999754 89999999997 9999998743


Q ss_pred             CC-CccccC-------HHHHHhcCcEEEEeeecCCC--ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcC
Q 016507          308 PG-SQLSLS-------SFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  377 (388)
Q Consensus       308 ~~-~~~~~~-------~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~  377 (388)
                      .. ..++++       ...++.+++++.|++...+.  ..++++++++++++|++++.  +..+|||+++++|++.+.++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~  341 (357)
T 2zb4_A          264 QYNKDVPYPPPLSPAIEAIQKERNITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIK--ETVINGLENMGAAFQSMMTG  341 (357)
T ss_dssp             GTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTCCCCC--EEEEECGGGHHHHHHHHHTT
T ss_pred             ccccCccccccchhhhhhhhhcceeEEEEeehhhhhHHHHHHHHHHHHHHHcCCCcCc--cceecCHHHHHHHHHHHHcC
Confidence            21 122222       14567789999998654321  13568899999999988776  44569999999999999887


Q ss_pred             ce-eEEEEeeCC
Q 016507          378 KC-LRCVIWMGE  388 (388)
Q Consensus       378 ~~-~kvvv~~~~  388 (388)
                      +. +|+||++++
T Consensus       342 ~~~gKvvi~~~~  353 (357)
T 2zb4_A          342 GNIGKQIVCISE  353 (357)
T ss_dssp             CCSBEEEEECCC
T ss_pred             CCCceEEEEEec
Confidence            64 699998763

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=100.00  E-value=2e-48  Score=372.22  Aligned_cols=313  Identities=16%  Similarity=0.167  Sum_probs=256.6

Q ss_pred             CcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC---------------------------
Q 016507           14 PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---------------------------   66 (388)
Q Consensus        14 ~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---------------------------   66 (388)
                      +.+|||++.......++++++|.|+|+++||||||.+++||++|++.+.|.++                           
T Consensus         5 ~~~mka~v~~~~~~~l~~~~~~~P~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~~~g~~~~p~~~~~~p~~~~~~~   84 (379)
T 3iup_A            5 ALQLRSRIKSSGELELSLDSIDTPHPGPDEVLIRIEASPLNPSDLGLLFGAADMSTAKASGTAERPIVTARVPEGAMRSM   84 (379)
T ss_dssp             EEEEEEEECTTSEEEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTTCEEEEEEEEECSSSEEEEEECCHHHHHHH
T ss_pred             hhhHHHHHhcCCCCceEEEeccCCCCCCCEEEEEEEEEecCHHHHHHhcCCccccccccccccccccccccCcccccccc
Confidence            56799999865444599999999999999999999999999999999887521                           


Q ss_pred             --CCCCCcccccceeEEEEEecCCC-CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccC
Q 016507           67 --PAVFPRILGHEAIGVVESVGENV-DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLR  143 (388)
Q Consensus        67 --~~~~p~v~G~e~~G~Vv~vG~~v-~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~  143 (388)
                        ...+|.++|||++|+|+++|++| ++|++||||+..+                                         
T Consensus        85 ~~~~~~p~i~G~e~~G~V~~vG~~v~~~~~vGdrV~~~~-----------------------------------------  123 (379)
T 3iup_A           85 AGRLDASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIG-----------------------------------------  123 (379)
T ss_dssp             GGGTTEEEECCSCEEEEEEEECSSHHHHTTTTCEEEECC-----------------------------------------
T ss_pred             ccccCCCccceeeeEEEEEEeCCCcccCCCCCCEEEecC-----------------------------------------
Confidence              13468999999999999999999 8999999997531                                         


Q ss_pred             CceecccccccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEE--ccchhHHHHHHHH
Q 016507          144 GETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGA  221 (388)
Q Consensus       144 ~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~--Gag~vG~~ai~la  221 (388)
                               .|+|+||++++.++++++|+++++++||++++.++|||+++ +... ++|++|||+  |+|++|++++|+|
T Consensus       124 ---------~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~-~~~~-~~g~~vlV~gag~G~vG~~a~q~a  192 (379)
T 3iup_A          124 ---------GAMYSQYRCIPADQCLVLPEGATPADGASSFVNPLTALGMV-ETMR-LEGHSALVHTAAASNLGQMLNQIC  192 (379)
T ss_dssp             ---------SCCSBSEEEEEGGGEEECCTTCCHHHHTTSSHHHHHHHHHH-HHHH-HTTCSCEEESSTTSHHHHHHHHHH
T ss_pred             ---------CCcceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHH-HHhc-cCCCEEEEECCCCCHHHHHHHHHH
Confidence                     24999999999999999999999999999999999999754 5555 899999999  4599999999999


Q ss_pred             HHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhh-----c
Q 016507          222 RLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCR-----K  295 (388)
Q Consensus       222 ~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~-----~  295 (388)
                      +.+|+ +|+++++++++.++++++|+++++|+++   .++.+.+++++++ ++|+||||+|+......++++++     +
T Consensus       193 ~~~Ga-~Vi~~~~~~~~~~~~~~lGa~~~~~~~~---~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~  268 (379)
T 3iup_A          193 LKDGI-KLVNIVRKQEQADLLKAQGAVHVCNAAS---PTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKS  268 (379)
T ss_dssp             HHHTC-CEEEEESSHHHHHHHHHTTCSCEEETTS---TTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTT
T ss_pred             HHCCC-EEEEEECCHHHHHHHHhCCCcEEEeCCC---hHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhcc
Confidence            99999 8999999999999999999999999988   7899999999988 99999999998776788888885     3


Q ss_pred             C----------CceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCc---cC----cHHHHHHHHhCCCCCCCcce
Q 016507          296 G----------WGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKA---KS----DIPILLKRYMDKELELDKFV  358 (388)
Q Consensus       296 ~----------~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~i  358 (388)
                      +          .|+++.+|... ..+  ++...++.+++++.|+++..+..   .+    .++++++++.++   +.+++
T Consensus       269 ~G~~~~~G~~~~g~iv~~G~~~-~~~--~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~i  342 (379)
T 3iup_A          269 AREYSRYGSTTHKQVYLYGGLD-TSP--TEFNRNFGMAWGMGGWLLFPFLQKIGRERANALKQRVVAELKTT---FASHY  342 (379)
T ss_dssp             CCSCCTTCCCSCEEEEECCCSE-EEE--EEECCCSCSCEEEEECCHHHHHHHHCHHHHHHHHHHHHHTTTTT---TCCCC
T ss_pred             ccceeecccccCceEEEecCCC-CCc--cccccccccceEEEEEEeeeecccCCHHHHHHHHHHHHHHHhcc---CCCcc
Confidence            3          04555555422 112  22234566789999987654421   12    235555555552   56678


Q ss_pred             eeeEecchH--HHHHHHHhcCce-eEEEEeeCC
Q 016507          359 THEMKFEEI--NSAFDLLIKGKC-LRCVIWMGE  388 (388)
Q Consensus       359 ~~~~~l~~~--~~A~~~~~~~~~-~kvvv~~~~  388 (388)
                      +++|||+++  ++|++.+.++.. +|+||++++
T Consensus       343 ~~~~~l~~~~~~~A~~~l~~~~~~gKvVv~~~~  375 (379)
T 3iup_A          343 SKEISLAEVLDLDMIAVYNKRATGEKYLINPNK  375 (379)
T ss_dssp             SEEEEHHHHTCHHHHHHHTTCCTTCCEEEETTT
T ss_pred             eEEecHHHhhhHHHHHHHhcCCCCceEEEeCCC
Confidence            899999999  999999988754 699999864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=100.00  E-value=8.3e-46  Score=343.83  Aligned_cols=295  Identities=20%  Similarity=0.269  Sum_probs=246.6

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||+++.+++++..++++|.|+|+++||||||.+++||++|++++.|.++. ..+|.++|||++|+|+           |
T Consensus         1 Mka~~~~~~g~~~~l~~~~~p~~~~~eVlVkv~a~gi~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~-----------G   69 (302)
T 1iz0_A            1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVVE-----------G   69 (302)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEET-----------T
T ss_pred             CeEEEEcCCCCchheEECCCCCCCCCEEEEEEEEEecCHHHHHHhCCCCCCCCCCCCcccceEEEEEE-----------C
Confidence            799999999886667799999999999999999999999999999987653 3679999999999998           9


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |||+...                              .                   .|+|+||+.+++++++++|++++
T Consensus        70 drV~~~~------------------------------~-------------------~G~~aey~~v~~~~~~~iP~~~~  100 (302)
T 1iz0_A           70 RRYAALV------------------------------P-------------------QGGLAERVAVPKGALLPLPEGLS  100 (302)
T ss_dssp             EEEEEEC------------------------------S-------------------SCCSBSEEEEEGGGCEECCTTCC
T ss_pred             cEEEEec------------------------------C-------------------CcceeeEEEEcHHHcEeCCCCCC
Confidence            9997531                              1                   24999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      +++||++++++.|||+++.+.+ +++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+++++|++
T Consensus       101 ~~~aa~l~~~~~ta~~~l~~~~-~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga~~~~~~~  178 (302)
T 1iz0_A          101 PEEAAAFPVSFLTAYLALKRAQ-ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAATYA  178 (302)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHTT-CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEEGG
T ss_pred             HHHHHHhhhHHHHHHHHHHHhc-CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCCCEEEECC
Confidence            9999999999999999887677 999999999997 9999999999999999 999999999999999999999998864


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                      +  ..++.+.+     +++|++|| +|+. .+..++++++++ |+++.+|.... ....+++..++.+++++.|+....+
T Consensus       179 ~--~~~~~~~~-----~~~d~vid-~g~~-~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~  247 (302)
T 1iz0_A          179 E--VPERAKAW-----GGLDLVLE-VRGK-EVEESLGLLAHG-GRLVYIGAAEG-EVAPIPPLRLMRRNLAVLGFWLTPL  247 (302)
T ss_dssp             G--HHHHHHHT-----TSEEEEEE-CSCT-THHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCHHHH
T ss_pred             c--chhHHHHh-----cCceEEEE-CCHH-HHHHHHHhhccC-CEEEEEeCCCC-CCCCcCHHHHHhCCCeEEEEeccch
Confidence            2  02333333     48999999 9985 489999999997 99999997533 2234666677889999999875422


Q ss_pred             -CccCcHHHHHH---HHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          335 -KAKSDIPILLK---RYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       335 -~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                       ...++++++++   ++.+|++  +++++++|||+++++|++.+.+++. +|+|+++
T Consensus       248 ~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~~~A~~~~~~~~~~gKvvv~~  302 (302)
T 1iz0_A          248 LREGALVEEALGFLLPRLGREL--RPVVGPVFPFAEAEAAFRALLDRGHTGKVVVRL  302 (302)
T ss_dssp             TTCHHHHHHHHHHHGGGBTTTB--CCCEEEEEEGGGHHHHHHHTTCTTCCBEEEEEC
T ss_pred             hhhHHHHHHHHhhhHHHHcCCc--ccccceEEcHHHHHHHHHHHHcCCCCceEEEeC
Confidence             12456888999   9999966  4568999999999999999987654 6999864

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=100.00  E-value=7.7e-44  Score=335.14  Aligned_cols=309  Identities=16%  Similarity=0.167  Sum_probs=254.4

Q ss_pred             CCcceeeeeecCC--C----CCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEec
Q 016507           13 KPIQCRAAIATAP--G----EPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVG   86 (388)
Q Consensus        13 ~~~~~ka~~~~~~--~----~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG   86 (388)
                      .+|+|||+++.+.  +    +.++++++|.|+|++|||||||.+++||+.|.. +.   .+..+|.++|||++|+|++. 
T Consensus         4 ~~~~mka~~~~~~~~g~~~~~~l~~~e~~~P~~~~~eVlVkv~a~gi~~~~~~-~~---~~~~~p~~~g~e~~G~Vv~~-   78 (333)
T 1v3u_A            4 FMVKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRI-AS---KRLKEGAVMMGQQVARVVES-   78 (333)
T ss_dssp             CCCEEEEEEECC-----CCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHH-HT---TTCCTTSBCCCCEEEEEEEE-
T ss_pred             ccccccEEEEeecCCCCCCccceEEEeCCCCCCCCCEEEEEEEEeccCHHHcc-cc---CcCCCCcccccceEEEEEec-
Confidence            4678999999874  3    238999999999999999999999999998863 21   12356889999999999995 


Q ss_pred             CCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCc
Q 016507           87 ENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH  166 (388)
Q Consensus        87 ~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~  166 (388)
                       ++++|++||||++.                                                    |+|+||+.++.++
T Consensus        79 -~v~~~~vGdrV~~~----------------------------------------------------g~~aey~~v~~~~  105 (333)
T 1v3u_A           79 -KNSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKG  105 (333)
T ss_dssp             -SCTTSCTTCEEEEC----------------------------------------------------CCSBSEEEESSTT
T ss_pred             -CCCCCCCCCEEEec----------------------------------------------------CceEEEEEechHH
Confidence             67899999999742                                                    3999999999999


Q ss_pred             eEEcCCC----CCccc-cccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH
Q 016507          167 VVKVDPT----VPPNR-ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE  240 (388)
Q Consensus       167 ~~~lP~~----~~~~~-aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~  240 (388)
                      ++++|++    +++++ +|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++++++++.+
T Consensus       106 ~~~iP~~~~~~~~~~~a~a~l~~~~~ta~~al~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~  184 (333)
T 1v3u_A          106 LEKLLTEWPDKLPLSLALGTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIA  184 (333)
T ss_dssp             EEECC--CCTTSCGGGGGTTTSHHHHHHHHHHHTTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHH
T ss_pred             eEEcCcccccCCCHHHHHHHhCChHHHHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHH
Confidence            9999997    88887 58899999999998878889999999999997 9999999999999999 9999999999999


Q ss_pred             HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCC----cc-ccC
Q 016507          241 IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGS----QL-SLS  315 (388)
Q Consensus       241 ~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~----~~-~~~  315 (388)
                      .++++|++.++|..+  .+++.+.+.+.+.+++|++||++|... +..++++++++ |+++.+|......    .. ..+
T Consensus       185 ~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~  260 (333)
T 1v3u_A          185 YLKQIGFDAAFNYKT--VNSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPS  260 (333)
T ss_dssp             HHHHTTCSEEEETTS--CSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EEEEECCCCC-------CCBCCC
T ss_pred             HHHhcCCcEEEecCC--HHHHHHHHHHHhCCCCeEEEECCChHH-HHHHHHHHhcC-CEEEEEeccccccCCCCCCCCcC
Confidence            999999999998764  146777788777668999999999865 89999999997 9999999753211    11 236


Q ss_pred             HHHHHhcCcEEEEeeecCCC---ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEee
Q 016507          316 SFEVLHSGKILMGSLFGGLK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWM  386 (388)
Q Consensus       316 ~~~~~~~~~~i~g~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~  386 (388)
                      ...++.+++++.|+....+.   ..+.++++++++++|++++..  ..+++|+++++|++.+.+++. +|+||++
T Consensus       261 ~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~--~~~~~l~~~~~A~~~~~~~~~~gKvvl~~  333 (333)
T 1v3u_A          261 PESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLEGKIQYHE--HVTKGFENMPAAFIEMLNGANLGKAVVTA  333 (333)
T ss_dssp             HHHHHHTTCEEEECCGGGCCTHHHHHHHHHHHHHHHTTSSCCCE--EEEECGGGHHHHHHHHHTTCCSBEEEEEC
T ss_pred             HHHHhhcCceEEEEehhhcchHHHHHHHHHHHHHHHCCCccCcc--ccccCHHHHHHHHHHHHcCCCCceEEEeC
Confidence            66788899999998754432   134677899999999887764  345799999999999988764 6999874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=100.00  E-value=9.9e-44  Score=336.07  Aligned_cols=314  Identities=17%  Similarity=0.184  Sum_probs=253.3

Q ss_pred             Ccceeeeeec-----CCCC-CeEEE--EeecCC-CCCCeEEEEEceeccCcccccccccCCCC----CCCCcccccceeE
Q 016507           14 PIQCRAAIAT-----APGE-PLVID--EVIVDP-PNSHEVRVRIICTSLCHSDVTFWKMKDFP----AVFPRILGHEAIG   80 (388)
Q Consensus        14 ~~~~ka~~~~-----~~~~-~~~~~--~~~~p~-~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----~~~p~v~G~e~~G   80 (388)
                      |++||++++.     +++. .++++  ++|.|. |++|||||||.++++|+.|. .+.|....    ..+|.++|||++|
T Consensus         2 ~~~mka~~m~a~~~~~p~~~~l~~~~~~~~~P~~~~~~eVlVkv~a~g~~~~~~-~~~g~~~~~~~~~~~p~v~G~e~~G   80 (345)
T 2j3h_A            2 TATNKQVILKDYVSGFPTESDFDFTTTTVELRVPEGTNSVLVKNLYLSCDPYMR-IRMGKPDPSTAALAQAYTPGQPIQG   80 (345)
T ss_dssp             EEEEEEEEECSCBSSSCCGGGEEEEEEEEECCSCSSSSCEEEEECEEECCTTHH-HHHBC---------CCCCTTSBCEE
T ss_pred             CccceEEEEecCCCCCCCccceeEEEeecCCCCCCCCCEEEEEEEEecCCHHHH-hhcccCCCCccccCCCcCCCCeeec
Confidence            4556666654     4453 38888  889897 89999999999999888874 44454322    2468999999999


Q ss_pred             EEEE--ecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceee
Q 016507           81 VVES--VGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSE  158 (388)
Q Consensus        81 ~Vv~--vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~  158 (388)
                      ++++  ||+++++|++||||+..                                                    |+|+|
T Consensus        81 ~~~~GvV~~~v~~~~vGdrV~~~----------------------------------------------------g~~ae  108 (345)
T 2j3h_A           81 YGVSRIIESGHPDYKKGDLLWGI----------------------------------------------------VAWEE  108 (345)
T ss_dssp             EEEEEEEEECSTTCCTTCEEEEE----------------------------------------------------EESBS
T ss_pred             ceEEEEEecCCCCCCCCCEEEee----------------------------------------------------cCcee
Confidence            9999  99999999999999742                                                    49999


Q ss_pred             eEEeecCc--eEEcCC---CCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE
Q 016507          159 YTVLDIAH--VVKVDP---TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV  232 (388)
Q Consensus       159 ~~~~~~~~--~~~lP~---~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~  232 (388)
                      |+.++.+.  ++++|+   +++++ +|+++++++|||+++.+.+++++|++|||+|+ |++|++++|+++..|+ +|+++
T Consensus       109 y~~v~~~~~~~~~ip~~~~~~~~~-aa~l~~~~~ta~~al~~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~  186 (345)
T 2j3h_A          109 YSVITPMTHAHFKIQHTDVPLSYY-TGLLGMPGMTAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGS  186 (345)
T ss_dssp             EEEECCCTTTCEEECCCSSCTTGG-GTTTSHHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEE
T ss_pred             EEEecccccceeecCCCCCCHHHH-HHhccccHHHHHHHHHHHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEE
Confidence            99998876  999996   35555 67888899999998878889999999999997 9999999999999999 99999


Q ss_pred             cCCchHHHHHH-HcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCC--
Q 016507          233 DVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPG--  309 (388)
Q Consensus       233 ~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~--  309 (388)
                      ++++++.+.++ ++|+++++|.++  ..++.+.+.+.+++++|++||++|+. .+..++++++++ |+++.+|.....  
T Consensus       187 ~~~~~~~~~~~~~~g~~~~~d~~~--~~~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~-G~~v~~G~~~~~~~  262 (345)
T 2j3h_A          187 AGSKEKVDLLKTKFGFDDAFNYKE--ESDLTAALKRCFPNGIDIYFENVGGK-MLDAVLVNMNMH-GRIAVCGMISQYNL  262 (345)
T ss_dssp             ESSHHHHHHHHHTSCCSEEEETTS--CSCSHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEE-EEEEECCCGGGTTC
T ss_pred             eCCHHHHHHHHHHcCCceEEecCC--HHHHHHHHHHHhCCCCcEEEECCCHH-HHHHHHHHHhcC-CEEEEEcccccccc
Confidence            99999999998 799999998765  13677778777655899999999985 489999999997 999999864321  


Q ss_pred             --CccccCHHHHHhcCcEEEEeeecCCC--ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEE
Q 016507          310 --SQLSLSSFEVLHSGKILMGSLFGGLK--AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVI  384 (388)
Q Consensus       310 --~~~~~~~~~~~~~~~~i~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv  384 (388)
                        ....++...++.+++++.|+....+.  ..+.++++++++++|++.  ++++++|+|+++++|++.+++++. +|+|+
T Consensus       263 ~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~~~g~i~--~~~~~~~~l~~~~~A~~~~~~~~~~gKvvv  340 (345)
T 2j3h_A          263 ENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIREGKIT--YVEDVADGLEKAPEALVGLFHGKNVGKQVV  340 (345)
T ss_dssp             SSCCCBSCTTHHHHHTCEEEECCGGGGGGGHHHHHHHHHHHHHTTSSC--CCEEEEESGGGSHHHHHHHHTTCCSSEEEE
T ss_pred             CCccccccHHHHhhhceeeceeeehhhhhhHHHHHHHHHHHHHCCCCc--CcccccCCHHHHHHHHHHHHcCCCceEEEE
Confidence              13455666778889999987654321  122488999999999766  457778999999999999988765 59999


Q ss_pred             eeCC
Q 016507          385 WMGE  388 (388)
Q Consensus       385 ~~~~  388 (388)
                      ++++
T Consensus       341 ~~~~  344 (345)
T 2j3h_A          341 VVAR  344 (345)
T ss_dssp             ESSC
T ss_pred             EeCC
Confidence            8753

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=100.00  E-value=4e-45  Score=377.57  Aligned_cols=304  Identities=19%  Similarity=0.209  Sum_probs=255.9

Q ss_pred             eeeeecCCCCC--eEEEEeec--CCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCC
Q 016507           18 RAAIATAPGEP--LVIDEVIV--DPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        18 ka~~~~~~~~~--~~~~~~~~--p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      ..+.+..+|.+  +++++.|.  |+|+++||+|||.++|||++|++++.|.++   .|.++|||++|+|+++|++|++|+
T Consensus       211 ~~l~~~~~G~~~~L~~~~~~~p~~~~~~~eVlV~V~a~gin~~D~~~~~G~~~---~~~~lG~E~aG~V~~vG~~V~~~~  287 (795)
T 3slk_A          211 WRLEATRPGSLDGLALVDEPTATAPLGDGEVRIAMRAAGVNFRDALIALGMYP---GVASLGSEGAGVVVETGPGVTGLA  287 (795)
T ss_dssp             CCEEESSTTSSTTEEECCCHHHHSCCCSSEEEEEEEEEEECHHHHHHTTTCCS---SCCCSCCCEEEEEEEECSSCCSSC
T ss_pred             EEEecCCCCCccceEEEeCCccCCCCCCCEEEEEEEEEccCHHHHHHHcCCCC---CCccccceeEEEEEEeCCCCCcCC
Confidence            44566666654  88877764  578999999999999999999999998764   356799999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||||+..                                                  ..|+|+||++++.++++++|++
T Consensus       288 vGDrV~~~--------------------------------------------------~~G~~ae~~~v~~~~~~~iP~~  317 (795)
T 3slk_A          288 PGDRVMGM--------------------------------------------------IPKAFGPLAVADHRMVTRIPAG  317 (795)
T ss_dssp             TTCEEEEC--------------------------------------------------CSSCSSSEEEEETTSEEECCTT
T ss_pred             CCCEEEEE--------------------------------------------------ecCCCcCEEEeehHHEEECCCC
Confidence            99999742                                                  1249999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +++++||++++.++|||+++.+.+++++|++|||+|+ |++|++++|+||.+|+ +|+++++++ +.++++ +|+++++|
T Consensus       318 ls~~~AA~l~~~~~Ta~~al~~~a~l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga-~V~~t~~~~-k~~~l~-lga~~v~~  394 (795)
T 3slk_A          318 WSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGA-EVYATASED-KWQAVE-LSREHLAS  394 (795)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCCTCCCTTCCEEEESTTBHHHHHHHHHHHHTTC-CEEEECCGG-GGGGSC-SCGGGEEC
T ss_pred             CCHHHHHhhhHHHHHHHHHHHHHhCCCCCCEEEEecCCCHHHHHHHHHHHHcCC-EEEEEeChH-Hhhhhh-cChhheee
Confidence            9999999999999999998888899999999999996 9999999999999999 899998665 666666 99999999


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      +++   .++.+.+++.++| ++|+|||++++.. +..++++++++ |+++.+|.........+   ....+++.+.++.+
T Consensus       395 ~~~---~~~~~~i~~~t~g~GvDvVld~~gg~~-~~~~l~~l~~~-Gr~v~iG~~~~~~~~~~---~~~~~~~~~~~~~l  466 (795)
T 3slk_A          395 SRT---CDFEQQFLGATGGRGVDVVLNSLAGEF-ADASLRMLPRG-GRFLELGKTDVRDPVEV---ADAHPGVSYQAFDT  466 (795)
T ss_dssp             SSS---STHHHHHHHHSCSSCCSEEEECCCTTT-THHHHTSCTTC-EEEEECCSTTCCCHHHH---HHHSSSEEEEECCG
T ss_pred             cCC---hhHHHHHHHHcCCCCeEEEEECCCcHH-HHHHHHHhcCC-CEEEEeccccccCcccc---cccCCCCEEEEeec
Confidence            988   8899999999998 9999999999876 89999999997 99999997543222221   12236777776654


Q ss_pred             cCCC---ccCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          332 GGLK---AKSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       332 ~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      ....   ..+.++++++++++|++.+  +++++||++++++||+.+.+++. +|+||++.
T Consensus       467 ~~~~~~~~~~~l~~~~~l~~~g~l~p--~~~~~~~l~~~~eA~~~l~~g~~~GKvVl~~~  524 (795)
T 3slk_A          467 VEAGPQRIGEMLHELVELFEGRVLEP--LPVTAWDVRQAPEALRHLSQARHVGKLVLTMP  524 (795)
T ss_dssp             GGGHHHHHHHHHHHHHHHHHTTSCCC--CCEEEEEGGGHHHHHHHHHHTCCCBEEEEECC
T ss_pred             cccCHHHHHHHHHHHHHHHHcCCcCC--CcceeEcHHHHHHHHHHHhcCCccceEEEecC
Confidence            2211   1346889999999997654  58899999999999999988765 59999864

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=100.00  E-value=5.1e-33  Score=314.81  Aligned_cols=291  Identities=19%  Similarity=0.170  Sum_probs=235.6

Q ss_pred             eEEEEeecCC-CC--CCeEEEEEceeccCcccccccccCCCCC-------CCCcccccceeEEEEEecCCCCCCCCCCEE
Q 016507           29 LVIDEVIVDP-PN--SHEVRVRIICTSLCHSDVTFWKMKDFPA-------VFPRILGHEAIGVVESVGENVDGVVEGDVV   98 (388)
Q Consensus        29 ~~~~~~~~p~-~~--~~eVlVkv~~~~i~~~D~~~~~g~~~~~-------~~p~v~G~e~~G~Vv~vG~~v~~~~vGd~V   98 (388)
                      +.+.+.+... +.  ++||+|||.|+|+|+.|+++..|.++..       ..|.++|+|++|+|.          +||+|
T Consensus      1544 l~~~~~~~~~~~~l~~~eVlVkV~aaglN~~Dv~~~~G~~~~~~~p~~~~~~~~~lG~E~aG~V~----------vGdrV 1613 (2512)
T 2vz8_A         1544 IRWVCSPLHYALPASCQDRLCSVYYTSLNFRDVMLATGKLSPDSIPGKWLTRDCMLGMEFSGRDA----------SGRRV 1613 (2512)
T ss_dssp             EEEEECTTTTCCCHHHHTTEEEEEEEECCHHHHHHHHTSSCGGGCCSCCSCSSSCCCCEEEEEET----------TSCCE
T ss_pred             eEEEecCcccccCCCCCceEEEEEecccCHHHHHHHhCCCccccccccccccCCceEEEEEEEEc----------cCCEE
Confidence            6666655433 33  7999999999999999999999876432       235689999999873          79999


Q ss_pred             eecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCCccc
Q 016507           99 IPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNR  178 (388)
Q Consensus        99 ~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~~~~  178 (388)
                      +..                              ...                   |+|+||++++.+.++++|+++++++
T Consensus      1614 ~g~------------------------------~~~-------------------G~~Aeyv~vp~~~v~~iPd~ls~~e 1644 (2512)
T 2vz8_A         1614 MGM------------------------------VPA-------------------EGLATSVLLLQHATWEVPSTWTLEE 1644 (2512)
T ss_dssp             EEE------------------------------CSS-------------------CCSBSEEECCGGGEEECCTTSCHHH
T ss_pred             EEe------------------------------ecC-------------------CceeeEEEcccceEEEeCCCCCHHH
Confidence            642                              112                   4999999999999999999999999


Q ss_pred             cccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEEEcC
Q 016507          179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNS  253 (388)
Q Consensus       179 aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~  253 (388)
                      ||++++.++|||+++...+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.+++++    +|+++++++
T Consensus      1645 AA~lp~~~~TA~~al~~~a~l~~Ge~VLI~gaaGgVG~aAiqlAk~~Ga-~Viat~~s~~k~~~l~~~~~~lga~~v~~~ 1723 (2512)
T 2vz8_A         1645 AASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGC-RVFTTVGSAEKRAYLQARFPQLDETCFANS 1723 (2512)
T ss_dssp             HTTSHHHHHHHHHHHTTTTCCCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTCCSTTEEES
T ss_pred             HHHhHHHHHHHHHHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHHcCC-EEEEEeCChhhhHHHHhhcCCCCceEEecC
Confidence            99999999999999888899999999999986 9999999999999999 99999999999999886    789999999


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      ++   .++.+.+++.++| ++|+||||+++. .+..++++++++ |+++.+|.........+. ..++.+++++.++.+.
T Consensus      1724 ~~---~~~~~~i~~~t~g~GvDvVld~~g~~-~l~~~l~~L~~~-Gr~V~iG~~~~~~~~~~~-~~~~~~~~~~~g~~l~ 1797 (2512)
T 2vz8_A         1724 RD---TSFEQHVLRHTAGKGVDLVLNSLAEE-KLQASVRCLAQH-GRFLEIGKFDLSNNHALG-MAVFLKNVTFHGILLD 1797 (2512)
T ss_dssp             SS---SHHHHHHHHTTTSCCEEEEEECCCHH-HHHHHHTTEEEE-EEEEECCCHHHHTTCEEE-GGGGGGCCEEEECCGG
T ss_pred             CC---HHHHHHHHHhcCCCCceEEEECCCch-HHHHHHHhcCCC-cEEEEeecccccccCccc-ccccccCCcEEEeeHH
Confidence            87   7899999999988 999999999854 499999999997 999999853211111111 2355679999998764


Q ss_pred             CCC--ccCcHHHHHHHH----hCCCCCCCcceeeeEecchHHHHHHHHhcCce-eEEEEeeC
Q 016507          333 GLK--AKSDIPILLKRY----MDKELELDKFVTHEMKFEEINSAFDLLIKGKC-LRCVIWMG  387 (388)
Q Consensus       333 ~~~--~~~~~~~~~~~~----~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~~~-~kvvv~~~  387 (388)
                      .+.  ..+.++++++++    .+|.  +.++++++||++++++|++.+.+++. +|+||+++
T Consensus      1798 ~~~~~~~~~~~~~l~~l~~~~~~g~--l~p~i~~~f~l~ei~eA~~~l~~g~~~GKvVi~~~ 1857 (2512)
T 2vz8_A         1798 SLFEEGGATWQEVSELLKAGIQEGV--VQPLKCTVFPRTKVEAAFRYMAQGKHIGKVVIQVR 1857 (2512)
T ss_dssp             GTTSSCCHHHHHHHHHHHHHHTTTC--SCCCCEEEEESSTHHHHHHHHHTTCCSSEEEEECS
T ss_pred             HHhhhCHHHHHHHHHHHHHHHHcCC--cCCCcceEecHHHHHHHHHhhhccCccceEEEECC
Confidence            432  123455555554    4564  44568899999999999999988765 59999874

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.88  E-value=1.1e-22  Score=176.42  Aligned_cols=184  Identities=23%  Similarity=0.284  Sum_probs=139.8

Q ss_pred             CceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH
Q 016507          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (388)
Q Consensus       165 ~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~  243 (388)
                      ++++++|+++++++||++++++.|||+++.+.+++++|++|||+|+ |++|++++++++..|+ +|+++++++++.+.++
T Consensus         2 ~~~~~~P~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~   80 (198)
T 1pqw_A            2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLS   80 (198)
T ss_dssp             ------------CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHH
T ss_pred             CceeECCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHH
Confidence            4688999999999999999999999998877789999999999996 9999999999999999 8999999999999999


Q ss_pred             HcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhc
Q 016507          244 RFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS  322 (388)
Q Consensus       244 ~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~  322 (388)
                      ++|++.++|..+   .++.+.+.+.+.+ ++|++||++|... +..++++++++ |+++.+|.........++.. .+.+
T Consensus        81 ~~g~~~~~d~~~---~~~~~~~~~~~~~~~~D~vi~~~g~~~-~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~  154 (198)
T 1pqw_A           81 RLGVEYVGDSRS---VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPG-GRFIELGKKDVYADASLGLA-ALAK  154 (198)
T ss_dssp             TTCCSEEEETTC---STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEE-EEEEECSCGGGTTTCEEEGG-GGTT
T ss_pred             HcCCCEEeeCCc---HHHHHHHHHHhCCCCCeEEEECCchHH-HHHHHHHhccC-CEEEEEcCCCCcCcCcCChh-HhcC
Confidence            999999988876   6777888887766 8999999998755 89999999997 99999997532122233332 3467


Q ss_pred             CcEEEEeee------cCCCccCcHHHHHHHHhCCCCCCC
Q 016507          323 GKILMGSLF------GGLKAKSDIPILLKRYMDKELELD  355 (388)
Q Consensus       323 ~~~i~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~  355 (388)
                      ++++.++.+      ......+.++++++++++|++++.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~  193 (198)
T 1pqw_A          155 SASFSVVDLDLNLKLQPARYRQLLQHILQHVADGKLEVL  193 (198)
T ss_dssp             TCEEEECCHHHHHHHCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred             CcEEEEEehHHhhccCHHHHHHHHHHHHHHHHcCCccCC
Confidence            888886533      110113568899999999987764

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.18  E-value=8.4e-12  Score=111.29  Aligned_cols=171  Identities=12%  Similarity=0.066  Sum_probs=110.9

Q ss_pred             CCCCCEEeecC-------CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec
Q 016507           92 VVEGDVVIPHF-------LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI  164 (388)
Q Consensus        92 ~~vGd~V~~~~-------~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~  164 (388)
                      +++||+|++.+       ...|+.|..|..|..++|.....       ..|                   +..+++.++.
T Consensus         4 ~~~Gd~V~~~~~~~~~~~~~~~g~~~~~~~G~~~~~~~~g~-------~~G-------------------~~~~~~~~~~   57 (248)
T 2yvl_A            4 FKEGEYVLIRFGEKKFLRKLLPKQSLSVKKSVLKFDEVIGK-------PEG-------------------VKINGFEVYR   57 (248)
T ss_dssp             CCTTCEEEEEETTEEEEEECCTTCEEEETTEEEEGGGTTTC-------CTT-------------------EEETTEEEEC
T ss_pred             CCCCCEEEEEeCCeEEEEEEcCCCEEecCCceEEHHHhcCC-------CCC-------------------CEEEEEEEeC
Confidence            89999999988       67899999999999888864321       011                   2222333322


Q ss_pred             CceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          165 AHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       165 ~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      .....+++......++.+. +...+  .+.....+.++++||.+|+| .|..++.+++. +. +|++++.+++..+.+++
T Consensus        58 p~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~vldiG~G-~G~~~~~l~~~-~~-~v~~vD~~~~~~~~a~~  131 (248)
T 2yvl_A           58 PTLEEIILLGFERKTQIIY-PKDSF--YIALKLNLNKEKRVLEFGTG-SGALLAVLSEV-AG-EVWTFEAVEEFYKTAQK  131 (248)
T ss_dssp             CCHHHHHHHTSCCSSCCCC-HHHHH--HHHHHTTCCTTCEEEEECCT-TSHHHHHHHHH-SS-EEEEECSCHHHHHHHHH
T ss_pred             CCHHHHHHhcCcCCCCccc-chhHH--HHHHhcCCCCCCEEEEeCCC-ccHHHHHHHHh-CC-EEEEEecCHHHHHHHHH
Confidence            2222222111112222221 22222  25567788999999999998 59999999988 66 99999999998887775


Q ss_pred             c----CC-c--EEEcCCCCCCccHHHHHHhhc-C-CCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          245 F----GV-T--EFVNSKNCGDKSVSQIIIDMT-D-GGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       245 l----ga-~--~v~~~~~~~~~~~~~~i~~~~-~-g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .    +. +  .++. .+     +.    +.. . ++||+|+...+.. ..+..+.+.|+++ |+++.+..
T Consensus       132 ~~~~~~~~~~~~~~~-~d-----~~----~~~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  191 (248)
T 2yvl_A          132 NLKKFNLGKNVKFFN-VD-----FK----DAEVPEGIFHAAFVDVREPWHYLEKVHKSLMEG-APVGFLLP  191 (248)
T ss_dssp             HHHHTTCCTTEEEEC-SC-----TT----TSCCCTTCBSEEEECSSCGGGGHHHHHHHBCTT-CEEEEEES
T ss_pred             HHHHcCCCCcEEEEE-cC-----hh----hcccCCCcccEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence            3    33 1  1221 11     11    112 2 3899999988766 5588999999997 99988754

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.98  E-value=3.9e-12  Score=121.69  Aligned_cols=181  Identities=14%  Similarity=0.172  Sum_probs=129.1

Q ss_pred             ccccceeEEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceeccccc
Q 016507           73 ILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVS  152 (388)
Q Consensus        73 v~G~e~~G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~  152 (388)
                      ..|+|.++.|.++|++++++.+|+.+++.+...                        ++                .-...
T Consensus        76 ~~g~~a~~~i~~v~~Glds~~vGe~~Il~qvk~------------------------~~----------------~~~~~  115 (404)
T 1gpj_A           76 KRGSEAVRHLFRVASGLESMMVGEQEILRQVKK------------------------AY----------------DRAAR  115 (404)
T ss_dssp             EEHHHHHHHHHHHHTTTTSSSTTCHHHHHHHHH------------------------HH----------------HHHHH
T ss_pred             ecCchHhhhheeeccCCCCCcCCcchhHHHHHH------------------------HH----------------HHHHH
Confidence            479999999999999999999999875321000                        00                00111


Q ss_pred             ccceeeeEEeecCceEEcCCCCCccccccccchhhhhHHHHHHhc---CCCCCCEEEEEccchhHHHHHHHHHHcCCcEE
Q 016507          153 VSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTA---NVEVGSTVVIFGLGSIGLAVAEGARLCGATRI  229 (388)
Q Consensus       153 ~g~~a~~~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~---~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~V  229 (388)
                      .|++++|+..+...++++|++++.+.++... +..++|.++....   .-.+|++|+|+|+|.+|.++++.++..|+++|
T Consensus       116 ~G~~~~~~~~~~~~a~~~~k~v~~~~~~~~~-~~s~a~~av~~a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V  194 (404)
T 1gpj_A          116 LGTLDEALKIVFRRAINLGKRAREETRISEG-AVSIGSAAVELAERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAV  194 (404)
T ss_dssp             HTCCCHHHHHHHHHHHHHHHHHHHHSSTTCS-CCSHHHHHHHHHHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEE
T ss_pred             cCCchHHHHHHHHHHhhhhccCcchhhhcCC-CccHHHHHHHHHHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEE
Confidence            2478888888888899999988887766543 6677777543222   12579999999999999999999999998899


Q ss_pred             EEEcCCchHH-HHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHH--HHHHH--h--hcCCceEEE
Q 016507          230 IGVDVISEKF-EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQ--EAYAC--C--RKGWGKTIV  302 (388)
Q Consensus       230 i~~~~~~~~~-~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~--~~~~~--l--~~~~G~~v~  302 (388)
                      +++++++++. ++++++|++ +++.     .++.+.+     .++|+|++|++.+..+.  ..+..  +  +++ +.++.
T Consensus       195 ~v~~r~~~ra~~la~~~g~~-~~~~-----~~l~~~l-----~~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~-~~~v~  262 (404)
T 1gpj_A          195 LVANRTYERAVELARDLGGE-AVRF-----DELVDHL-----ARSDVVVSATAAPHPVIHVDDVREALRKRDRR-SPILI  262 (404)
T ss_dssp             EEECSSHHHHHHHHHHHTCE-ECCG-----GGHHHHH-----HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSC-CCEEE
T ss_pred             EEEeCCHHHHHHHHHHcCCc-eecH-----HhHHHHh-----cCCCEEEEccCCCCceecHHHHHHHHHhccCC-CCEEE
Confidence            9999999886 677888876 3332     2343333     27999999998764321  44554  3  455 77777


Q ss_pred             EccC
Q 016507          303 LGVD  306 (388)
Q Consensus       303 ~g~~  306 (388)
                      ++..
T Consensus       263 vdia  266 (404)
T 1gpj_A          263 IDIA  266 (404)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            7764

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.74  E-value=1.2e-08  Score=96.09  Aligned_cols=139  Identities=20%  Similarity=0.157  Sum_probs=98.0

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE--EEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~--v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +++|+|+|+|++|+++++.++.+|+ +|+++++++++.+.++++++..  +++.+.   .++.+.+.     ++|+||+|
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~DvVI~~  237 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA-----EADLLIGA  237 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH-----TCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCceeEeeeCCH---HHHHHHHc-----CCCEEEEC
Confidence            4899999999999999999999999 9999999999999988876543  344332   33444332     79999999


Q ss_pred             cCCHHH------HHHHHHHhhcCCceEEEEccCCCCC-----ccccCHHHHHhcCcEEEEeeecCC---------CccCc
Q 016507          280 VGLASL------VQEAYACCRKGWGKTIVLGVDQPGS-----QLSLSSFEVLHSGKILMGSLFGGL---------KAKSD  339 (388)
Q Consensus       280 ~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~---------~~~~~  339 (388)
                      ++.+..      ....++.++++ |.++.++...++.     +.+++...+..+++.+.+...-..         ..+..
T Consensus       238 ~~~~~~~~~~li~~~~~~~~~~g-~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s~~~~~~~  316 (361)
T 1pjc_A          238 VLVPGRRAPILVPASLVEQMRTG-SVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTATQALNNST  316 (361)
T ss_dssp             CCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHHHHHHHHH
T ss_pred             CCcCCCCCCeecCHHHHhhCCCC-CEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHHHHHHHHH
Confidence            987542      46678889997 9999998644321     234444445567788776431110         01234


Q ss_pred             HHHHHHHHhCC
Q 016507          340 IPILLKRYMDK  350 (388)
Q Consensus       340 ~~~~~~~~~~~  350 (388)
                      ++.+++++.+|
T Consensus       317 ~~~l~~l~~~G  327 (361)
T 1pjc_A          317 LPYVVKLANQG  327 (361)
T ss_dssp             HHHHHHHHHHG
T ss_pred             HHHHHHHHhCC
Confidence            56777787777

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.65  E-value=2.4e-08  Score=94.71  Aligned_cols=168  Identities=18%  Similarity=0.213  Sum_probs=106.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCC-------------C---CccHHH
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNC-------------G---DKSVSQ  263 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~-------------~---~~~~~~  263 (388)
                      ++++|+|+|+|.+|++++++++.+|+ +|+++++++++.+.++++|++.+ ++..+.             .   .....+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~  249 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  249 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHH
Confidence            68999999999999999999999999 79999999999888888998754 232110             0   000122


Q ss_pred             HHHhhcCCCccEEEEcc---CCH--HH-HHHHHHHhhcCCceEEEEccCCCCC-ccccCHHHHHhcCcEEEEeeecCCCc
Q 016507          264 IIIDMTDGGADYCFECV---GLA--SL-VQEAYACCRKGWGKTIVLGVDQPGS-QLSLSSFEVLHSGKILMGSLFGGLKA  336 (388)
Q Consensus       264 ~i~~~~~g~~dvvid~~---g~~--~~-~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~  336 (388)
                      .+.+... ++|+||+|+   |.+  .. ....++.++++ +.++.++...+.. ..+.+...+..+++++.+...  + .
T Consensus       250 ~l~~~~~-~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g-~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~--~-p  324 (384)
T 1l7d_A          250 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTN--V-P  324 (384)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSS--G-G
T ss_pred             HHHHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-CEEEEEecCCCCCeecccCCcEEEECCEEEEEeCC--C-c
Confidence            2333333 799999999   421  21 26788999997 9999998633221 122233334567888887642  1 1


Q ss_pred             cCcHHHHHHHHhCCCCCCCcce-ee---eEecchHHHHHHHH
Q 016507          337 KSDIPILLKRYMDKELELDKFV-TH---EMKFEEINSAFDLL  374 (388)
Q Consensus       337 ~~~~~~~~~~~~~~~~~~~~~i-~~---~~~l~~~~~A~~~~  374 (388)
                      ....+.+.+++.++.+++-..+ .+   .+.++.-++.++..
T Consensus       325 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~  366 (384)
T 1l7d_A          325 SRVAADASPLFAKNLLNFLTPHVDKDTKTLVMKLEDETVSGT  366 (384)
T ss_dssp             GGGHHHHHHHHHHHHHHHHGGGEETTTTEECCCTTCHHHHHH
T ss_pred             chhHHHHHHHHHHhHHHHHHHHHhCCcchhhccccCHHHhcC
Confidence            2335557788877754432222 22   34444445555543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.64  E-value=1.1e-08  Score=99.08  Aligned_cols=171  Identities=16%  Similarity=0.130  Sum_probs=110.5

Q ss_pred             hhhhHHHHHHhc-CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHH
Q 016507          186 VSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQI  264 (388)
Q Consensus       186 ~~ta~~~l~~~~-~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~  264 (388)
                      ..+++.++.+.. ...+|++|+|+|.|.+|..+++.++.+|+ +|+++++++.+.+.++++|++ +.        ++.+.
T Consensus       257 ~~s~~~g~~r~~~~~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~Ga~-~~--------~l~e~  326 (494)
T 3ce6_A          257 RHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMMEGFD-VV--------TVEEA  326 (494)
T ss_dssp             HHHHHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-EC--------CHHHH
T ss_pred             hhhhhHHHHhccCCCCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCE-Ee--------cHHHH
Confidence            344555443322 26789999999999999999999999999 999999999998888889986 32        12222


Q ss_pred             HHhhcCCCccEEEEccCCHHHHH-HHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCc---EEEEeeecCCCccCcH
Q 016507          265 IIDMTDGGADYCFECVGLASLVQ-EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK---ILMGSLFGGLKAKSDI  340 (388)
Q Consensus       265 i~~~~~g~~dvvid~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~---~i~g~~~~~~~~~~~~  340 (388)
                      +     .++|+|+++++....+. ..++.++++ |.++.+|...    ..++...+..+.+   ++.+... .+. ...+
T Consensus       327 l-----~~aDvVi~atgt~~~i~~~~l~~mk~g-gilvnvG~~~----~eId~~aL~~~aL~~~~I~~~ld-v~~-~~~~  394 (494)
T 3ce6_A          327 I-----GDADIVVTATGNKDIIMLEHIKAMKDH-AILGNIGHFD----NEIDMAGLERSGATRVNVKPQVD-LWT-FGDT  394 (494)
T ss_dssp             G-----GGCSEEEECSSSSCSBCHHHHHHSCTT-CEEEECSSSG----GGBCHHHHHHTTCEEEEEETTEE-EEE-CTTT
T ss_pred             H-----hCCCEEEECCCCHHHHHHHHHHhcCCC-cEEEEeCCCC----CccCHHHHHHhhhccceEEEEEE-Eee-cCCc
Confidence            2     27999999999876555 788999997 9999998632    2456666655444   4443221 010 0111


Q ss_pred             HHHHHHHhCCCCC--------CCcceeeeEecchHHHHHHHHhcCce
Q 016507          341 PILLKRYMDKELE--------LDKFVTHEMKFEEINSAFDLLIKGKC  379 (388)
Q Consensus       341 ~~~~~~~~~~~~~--------~~~~i~~~~~l~~~~~A~~~~~~~~~  379 (388)
                      ...+.++.++++.        +..++++.| ++++.++++.+.++..
T Consensus       395 ~~~l~LL~~grlvnL~~~TPH~a~~~~~s~-~~qa~~ai~~~~~g~~  440 (494)
T 3ce6_A          395 GRSIIVLSEGRLLNLGNATGHPSFVMSNSF-ANQTIAQIELWTKNDE  440 (494)
T ss_dssp             CCEEEEEGGGSCHHHHHSCCSCHHHHHHHH-HHHHHHHHHHHHTGGG
T ss_pred             chHHHHHhCCCEEeccCCCCCccccchHHH-HHHHHHHHHHHHcCCC
Confidence            1122233344332        111223334 5678888887777543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.55  E-value=1.3e-07  Score=89.49  Aligned_cols=120  Identities=17%  Similarity=0.169  Sum_probs=85.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      ++++|+|+|+|.+|+++++.++.+|+ +|+++++++++.+.+++ +|+....+...  ..++.+.+.     ++|+|++|
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~~~~~~~~~--~~~l~~~l~-----~aDvVi~~  238 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCGRIHTRYSS--AYELEGAVK-----RADLVIGA  238 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSSEEEECC--HHHHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCCeeEeccCC--HHHHHHHHc-----CCCEEEEC
Confidence            57899999999999999999999999 99999999999888776 67753232222  023333332     68999999


Q ss_pred             cCCHHH------HHHHHHHhhcCCceEEEEccCCCC-----CccccCHHHHHhcCcEEEEe
Q 016507          280 VGLASL------VQEAYACCRKGWGKTIVLGVDQPG-----SQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       280 ~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~-----~~~~~~~~~~~~~~~~i~g~  329 (388)
                      ++.+..      ....++.++++ |.++.++...+.     .+.+++...+..+++.+.+.
T Consensus       239 ~~~p~~~t~~li~~~~l~~mk~g-~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~  298 (377)
T 2vhw_A          239 VLVPGAKAPKLVSNSLVAHMKPG-AVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCV  298 (377)
T ss_dssp             CCCTTSCCCCCBCHHHHTTSCTT-CEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECB
T ss_pred             CCcCCCCCcceecHHHHhcCCCC-cEEEEEecCCCCccccccCCCCCCCEEEECCEEEEec
Confidence            976643      46788899997 999999854321     23334433344566666544

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.51  E-value=2.8e-07  Score=86.91  Aligned_cols=141  Identities=19%  Similarity=0.233  Sum_probs=88.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      ++++|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.+++ +|.....+..+  ..++.+.+.     ++|+||+|
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~~~~~~~~~--~~~l~~~~~-----~~DvVi~~  236 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGGRVITLTAT--EANIKKSVQ-----HADLLIGA  236 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTTSEEEEECC--HHHHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCceEEEecCC--HHHHHHHHh-----CCCEEEEC
Confidence            46899999999999999999999999 99999999998887765 77764333322  123333332     78999999


Q ss_pred             cCCHHH------HHHHHHHhhcCCceEEEEccCCCCC-----ccccCHHHHHhcCcEEEEeeecCC---------CccCc
Q 016507          280 VGLASL------VQEAYACCRKGWGKTIVLGVDQPGS-----QLSLSSFEVLHSGKILMGSLFGGL---------KAKSD  339 (388)
Q Consensus       280 ~g~~~~------~~~~~~~l~~~~G~~v~~g~~~~~~-----~~~~~~~~~~~~~~~i~g~~~~~~---------~~~~~  339 (388)
                      ++.+..      ....++.++++ |.++.++...+..     +.+++...+..+++.+.+...-..         ..+..
T Consensus       237 ~g~~~~~~~~li~~~~l~~mk~g-g~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~  315 (369)
T 2eez_A          237 VLVPGAKAPKLVTRDMLSLMKEG-AVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTSTFALTNQT  315 (369)
T ss_dssp             CC-------CCSCHHHHTTSCTT-CEEEECC-------------------CEETTEEEECCSCSGGGSHHHHHHHHHHHH
T ss_pred             CCCCccccchhHHHHHHHhhcCC-CEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHHHHHHHHH
Confidence            997642      46788899997 9999998643221     223333344456777666431100         01234


Q ss_pred             HHHHHHHHhCC
Q 016507          340 IPILLKRYMDK  350 (388)
Q Consensus       340 ~~~~~~~~~~~  350 (388)
                      ++.+++++.+|
T Consensus       316 ~~~l~~l~~~g  326 (369)
T 2eez_A          316 LPYVLKLAEKG  326 (369)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHhcC
Confidence            56777777766

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.40  E-value=6.7e-07  Score=85.07  Aligned_cols=126  Identities=17%  Similarity=0.195  Sum_probs=85.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cCCCC----------CCccH----HHHH
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNC----------GDKSV----SQII  265 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~----------~~~~~----~~~i  265 (388)
                      ++++|+|+|+|.+|+.++++++.+|+ +|+++++++++.+.++++|++.+. +..+.          ...++    .+.+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga-~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          171 PPAKVMVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            58899999999999999999999999 899999999999888889987542 21100          00111    1123


Q ss_pred             HhhcCCCccEEEEccCCH-----HH-HHHHHHHhhcCCceEEEEccCCCCCccccC--HH-HHHhcCcEEEEee
Q 016507          266 IDMTDGGADYCFECVGLA-----SL-VQEAYACCRKGWGKTIVLGVDQPGSQLSLS--SF-EVLHSGKILMGSL  330 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~-----~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~--~~-~~~~~~~~i~g~~  330 (388)
                      .+... ++|+||++++.+     .. ....++.++++ +.++.++...++ .+...  .. .+..+++.+.|..
T Consensus       250 ~e~~~-~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g-~vIVdva~~~Gg-~v~~~~~~~p~~~~~gv~i~g~~  320 (401)
T 1x13_A          250 AAQAK-EVDIIVTTALIPGKPAPKLITREMVDSMKAG-SVIVDLAAQNGG-NCEYTVPGEIFTTENGVKVIGYT  320 (401)
T ss_dssp             HHHHH-HCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGGTC-SBTTCCTTSEEECTTSCEEECCS
T ss_pred             HHHhC-CCCEEEECCccCCCCCCeeeCHHHHhcCCCC-cEEEEEcCCCCC-CcCcccCCCceEEECCEEEEeeC
Confidence            33322 699999995332     21 25788999997 999999864222 22222  11 1445788888764

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.06  E-value=2.6e-05  Score=63.78  Aligned_cols=91  Identities=21%  Similarity=0.167  Sum_probs=65.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      ..++.+|+|+|+|.+|..+++.++..|+ +|+++++++++.+.++ ..|...+. .+.   .+ .+.+.+....++|+||
T Consensus        16 ~~~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~g~~~~~-~d~---~~-~~~l~~~~~~~ad~Vi   89 (155)
T 2g1u_A           16 KQKSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNSEFSGFTVV-GDA---AE-FETLKECGMEKADMVF   89 (155)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCTTCCSEEEE-SCT---TS-HHHHHTTTGGGCSEEE
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHhcCCCcEEE-ecC---CC-HHHHHHcCcccCCEEE
Confidence            4567899999999999999999999999 9999999999888777 67765432 221   11 2233332112799999


Q ss_pred             EccCCHHHHHHHHHHhhc
Q 016507          278 ECVGLASLVQEAYACCRK  295 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~~  295 (388)
                      .|++.+.....+...++.
T Consensus        90 ~~~~~~~~~~~~~~~~~~  107 (155)
T 2g1u_A           90 AFTNDDSTNFFISMNARY  107 (155)
T ss_dssp             ECSSCHHHHHHHHHHHHH
T ss_pred             EEeCCcHHHHHHHHHHHH
Confidence            999998755555555554

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.04  E-value=6.5e-06  Score=77.47  Aligned_cols=127  Identities=17%  Similarity=0.211  Sum_probs=83.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC-------------CCCCCccH----HH
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS-------------KNCGDKSV----SQ  263 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~-------------~~~~~~~~----~~  263 (388)
                      ++.+|+|+|+|.+|+.++++++.+|+ +|+++++++++++.++++|++.+-..             ...-...+    .+
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~  267 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGA-VVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAA  267 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHh
Confidence            57899999999999999999999999 99999999999999999988632110             00000000    11


Q ss_pred             HHHhhcCCCccEEEEccCCHH------HHHHHHHHhhcCCceEEEEccCCCCC-ccccCHHHHHhcCcEEEEee
Q 016507          264 IIIDMTDGGADYCFECVGLAS------LVQEAYACCRKGWGKTIVLGVDQPGS-QLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       264 ~i~~~~~g~~dvvid~~g~~~------~~~~~~~~l~~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~~~i~g~~  330 (388)
                      .+.+... +.|+||.|+..+.      ..+..++.++++ ..++.++...++. ..+-+...+..+++.+.+..
T Consensus       268 ~l~e~l~-~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~G-sVIVDvA~d~GG~~e~t~~~~~~~~~GV~~~gv~  339 (405)
T 4dio_A          268 LVAEHIA-KQDIVITTALIPGRPAPRLVTREMLDSMKPG-SVVVDLAVERGGNIEGAEAGKVTEVGGVRIVGHL  339 (405)
T ss_dssp             HHHHHHH-TCSEEEECCCCSSSCCCCCBCHHHHTTSCTT-CEEEETTGGGTCSBTTCCTTEEEEETTEEEEECS
T ss_pred             HHHHHhc-CCCEEEECCcCCCCCCCEEecHHHHhcCCCC-CEEEEEeCCCCCCccccCCCCeEEECCEEEEEeC
Confidence            2222211 7999999964321      246889999997 9999988532221 11111112334577777664

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.03  E-value=5.8e-06  Score=77.21  Aligned_cols=104  Identities=18%  Similarity=0.189  Sum_probs=74.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cC--CC--CCC----c----cHHHHHHh
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NS--KN--CGD----K----SVSQIIID  267 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~--~~--~~~----~----~~~~~i~~  267 (388)
                      ++.+|+|+|+|.+|+.+++.++.+|+ +|+++++++++.+.++++|++.+- +.  ..  .+.    +    ...+.+.+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa-~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e  261 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGA-KTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALED  261 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHH
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHH
Confidence            67899999999999999999999999 899999999999999999886431 00  00  000    0    01112222


Q ss_pred             hcCCCccEEEEccCCH-----H-HHHHHHHHhhcCCceEEEEccCC
Q 016507          268 MTDGGADYCFECVGLA-----S-LVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       268 ~~~g~~dvvid~~g~~-----~-~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      .. .++|+||.++..+     . .....++.++++ +.++.++...
T Consensus       262 ~l-~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpG-sVIVDvA~d~  305 (381)
T 3p2y_A          262 AI-TKFDIVITTALVPGRPAPRLVTAAAATGMQPG-SVVVDLAGET  305 (381)
T ss_dssp             HH-TTCSEEEECCCCTTSCCCCCBCHHHHHTSCTT-CEEEETTGGG
T ss_pred             HH-hcCCEEEECCCCCCcccceeecHHHHhcCCCC-cEEEEEeCCC
Confidence            22 2899999986332     1 137889999997 9999998643

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=97.97  E-value=5.6e-06  Score=74.68  Aligned_cols=103  Identities=17%  Similarity=0.271  Sum_probs=72.8

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHc----CC-cEE-EcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GV-TEF-VNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~l----ga-~~v-~~~~~~~~~~~~~~i  265 (388)
                      +.....+.++++||-+|+|. |..++.+++..+ ..+|++++.+++..+.+++.    +. +.+ +-..     ++.+. 
T Consensus       104 i~~~~~~~~~~~VLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~-  176 (277)
T 1o54_A          104 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVR-----DISEG-  176 (277)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECC-----CGGGC-
T ss_pred             HHHHhCCCCCCEEEEECCcC-CHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEEC-----CHHHc-
Confidence            45667889999999999877 888888998853 23999999999888777653    43 111 1111     22111 


Q ss_pred             HhhcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          266 IDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                        +..+.||+|+...... ..+..+.+.|+++ |.++.+..
T Consensus       177 --~~~~~~D~V~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  214 (277)
T 1o54_A          177 --FDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVCP  214 (277)
T ss_dssp             --CSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEES
T ss_pred             --ccCCccCEEEECCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence              1223799999876655 5578899999997 99887753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.90  E-value=8.4e-05  Score=57.18  Aligned_cols=93  Identities=18%  Similarity=0.165  Sum_probs=64.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +.+|+|+|+|.+|..+++.+...| + +|+++++++++.+.+...+...+ .|..+      .+.+.+... ++|+||+|
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~-~v~~~~r~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~~-~~d~vi~~   76 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNY-SVTVADHDLAALAVLNRMGVATKQVDAKD------EAGLAKALG-GFDAVISA   76 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSE-EEEEEESCHHHHHHHHTTTCEEEECCTTC------HHHHHHHTT-TCSEEEEC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCHHHHHHHHhCCCcEEEecCCC------HHHHHHHHc-CCCEEEEC
Confidence            468999999999999999999999 6 89999999998888776666543 23222      233333332 79999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEEEE
Q 016507          280 VGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      ++..........+...+ -.++.+
T Consensus        77 ~~~~~~~~~~~~~~~~g-~~~~~~   99 (118)
T 3ic5_A           77 APFFLTPIIAKAAKAAG-AHYFDL   99 (118)
T ss_dssp             SCGGGHHHHHHHHHHTT-CEEECC
T ss_pred             CCchhhHHHHHHHHHhC-CCEEEe
Confidence            98766444444444543 444433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=97.88  E-value=2.6e-05  Score=70.38  Aligned_cols=99  Identities=13%  Similarity=0.155  Sum_probs=74.0

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCcE--EEcCCCCCCccHHHHHHhh
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTE--FVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~~--v~~~~~~~~~~~~~~i~~~  268 (388)
                      ..++++++++||.+|.|+.++.++.+++..|+ +|++++.+++..+.+++.    |.+.  ++..+.   .+       +
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga-~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa---~~-------l  184 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHVYGM-RVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDE---TV-------I  184 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHTTCC-EEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCG---GG-------G
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHccCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEECch---hh-------C
Confidence            35678999999999999888888888888898 999999999988887753    5422  222111   11       2


Q ss_pred             cCCCccEEEEccCCH---HHHHHHHHHhhcCCceEEEEcc
Q 016507          269 TDGGADYCFECVGLA---SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       269 ~~g~~dvvid~~g~~---~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ..+.||+|+.....+   ..++.+.+.|+++ |+++....
T Consensus       185 ~d~~FDvV~~~a~~~d~~~~l~el~r~LkPG-G~Lvv~~~  223 (298)
T 3fpf_A          185 DGLEFDVLMVAALAEPKRRVFRNIHRYVDTE-TRIIYRTY  223 (298)
T ss_dssp             GGCCCSEEEECTTCSCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred             CCCCcCEEEECCCccCHHHHHHHHHHHcCCC-cEEEEEcC
Confidence            234899999765543   4588999999998 99987653

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.84  E-value=1e-05  Score=65.27  Aligned_cols=104  Identities=13%  Similarity=0.089  Sum_probs=72.4

Q ss_pred             hhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCCcEEEcCCCCCCccHHHHH
Q 016507          187 STGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQII  265 (388)
Q Consensus       187 ~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~i  265 (388)
                      ++++.++ +.+....+.+|+|+|+|.+|.+.++.++..|+ +|++.++++++.+. ++.++.+. ...     .++.+.+
T Consensus         7 sv~~~a~-~~~~~~~~~~v~iiG~G~iG~~~a~~l~~~g~-~v~v~~r~~~~~~~~a~~~~~~~-~~~-----~~~~~~~   78 (144)
T 3oj0_A            7 SIPSIVY-DIVRKNGGNKILLVGNGMLASEIAPYFSYPQY-KVTVAGRNIDHVRAFAEKYEYEY-VLI-----NDIDSLI   78 (144)
T ss_dssp             SHHHHHH-HHHHHHCCCEEEEECCSHHHHHHGGGCCTTTC-EEEEEESCHHHHHHHHHHHTCEE-EEC-----SCHHHHH
T ss_pred             cHHHHHH-HHHHhccCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCHHHHHHHHHHhCCce-Eee-----cCHHHHh
Confidence            4455543 33444459999999999999999998888899 59999999888654 56677543 222     2344333


Q ss_pred             HhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          266 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .     ++|+|+.|++....+.. ...++++ +.++.++.
T Consensus        79 ~-----~~Divi~at~~~~~~~~-~~~l~~g-~~vid~~~  111 (144)
T 3oj0_A           79 K-----NNDVIITATSSKTPIVE-ERSLMPG-KLFIDLGN  111 (144)
T ss_dssp             H-----TCSEEEECSCCSSCSBC-GGGCCTT-CEEEECCS
T ss_pred             c-----CCCEEEEeCCCCCcEee-HHHcCCC-CEEEEccC
Confidence            2     68999999997642222 2567776 88888875

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.76  E-value=0.00031  Score=58.83  Aligned_cols=95  Identities=17%  Similarity=0.249  Sum_probs=68.0

Q ss_pred             CCEEEEEccchhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHHcCCcEEE-cCCCCCCccHHHHHHhhcC-CCccEEEE
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTD-GGADYCFE  278 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~i~~~~~-g~~dvvid  278 (388)
                      +++|+|+|.|.+|..+++.++.. |+ +|+++++++++.+.+++.|+..+. |..+   .   +.+.+.++ .++|+||.
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~g~~~~~gd~~~---~---~~l~~~~~~~~ad~vi~  111 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSEGRNVISGDATD---P---DFWERILDTGHVKLVLL  111 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHTTCCEEECCTTC---H---HHHHTBCSCCCCCEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHCCCCEEEcCCCC---H---HHHHhccCCCCCCEEEE
Confidence            66899999999999999999988 98 899999999999888888876544 3222   2   23444312 28999999


Q ss_pred             ccCCHHHHHHHHHHhhcC--CceEEEE
Q 016507          279 CVGLASLVQEAYACCRKG--WGKTIVL  303 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~--~G~~v~~  303 (388)
                      +++.......+...++..  ...++..
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          112 AMPHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             CCSSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             eCCChHHHHHHHHHHHHHCCCCEEEEE
Confidence            999876444444444442  0355543

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.76  E-value=0.00012  Score=69.01  Aligned_cols=92  Identities=16%  Similarity=0.233  Sum_probs=72.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .-.|.+|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|.. +        .++.+.+     ...|+|+.
T Consensus       217 ~L~GktV~ViG~G~IGk~vA~~Lra~Ga-~Viv~D~dp~ra~~A~~~G~~-v--------~~Leeal-----~~ADIVi~  281 (435)
T 3gvp_A          217 MFGGKQVVVCGYGEVGKGCCAALKAMGS-IVYVTEIDPICALQACMDGFR-L--------VKLNEVI-----RQVDIVIT  281 (435)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-E--------CCHHHHT-----TTCSEEEE
T ss_pred             eecCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEeCChhhhHHHHHcCCE-e--------ccHHHHH-----hcCCEEEE
Confidence            4589999999999999999999999999 899999988776666666653 1        1233322     27899999


Q ss_pred             ccCCHHHHH-HHHHHhhcCCceEEEEccC
Q 016507          279 CVGLASLVQ-EAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       279 ~~g~~~~~~-~~~~~l~~~~G~~v~~g~~  306 (388)
                      |.+....+. ..+..++++ +.++.+|..
T Consensus       282 atgt~~lI~~e~l~~MK~g-ailINvgrg  309 (435)
T 3gvp_A          282 CTGNKNVVTREHLDRMKNS-CIVCNMGHS  309 (435)
T ss_dssp             CSSCSCSBCHHHHHHSCTT-EEEEECSST
T ss_pred             CCCCcccCCHHHHHhcCCC-cEEEEecCC
Confidence            988665454 889999997 999999863

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.74  E-value=4.6e-05  Score=68.14  Aligned_cols=94  Identities=16%  Similarity=0.176  Sum_probs=68.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHHcCCc-EEEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .++.+||.+|.|. |..+..+++.. +. +|++++.+++..+.+++.+.. .++..+.   .++     .+..+.||+|+
T Consensus        84 ~~~~~vLdiG~G~-G~~~~~l~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~d~---~~~-----~~~~~~fD~v~  153 (269)
T 1p91_A           84 DKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVASS---HRL-----PFSDTSMDAII  153 (269)
T ss_dssp             TTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECCT---TSC-----SBCTTCEEEEE
T ss_pred             CCCCEEEEECCCC-CHHHHHHHHhCCCC-eEEEEeCCHHHHHHHHHhCCCcEEEEcch---hhC-----CCCCCceeEEE
Confidence            6788999999988 88888999886 66 999999999999988876543 2222211   111     12223799999


Q ss_pred             EccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          278 ECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .... ...+..+.+.|+++ |.++....
T Consensus       154 ~~~~-~~~l~~~~~~L~pg-G~l~~~~~  179 (269)
T 1p91_A          154 RIYA-PCKAEELARVVKPG-GWVITATP  179 (269)
T ss_dssp             EESC-CCCHHHHHHHEEEE-EEEEEEEE
T ss_pred             EeCC-hhhHHHHHHhcCCC-cEEEEEEc
Confidence            6443 44489999999998 99987754

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.72  E-value=2.1e-05  Score=72.98  Aligned_cols=105  Identities=19%  Similarity=0.200  Sum_probs=68.3

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHcCC---------------c--EEEcCC
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGV---------------T--EFVNSK  254 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~lga---------------~--~v~~~~  254 (388)
                      +.....+.++++||-+|.|. |..++.+++..|. .+|++++.++...+.+++...               +  .++..+
T Consensus        97 ~l~~l~~~~g~~VLDiG~G~-G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d  175 (336)
T 2b25_A           97 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  175 (336)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHhcCCCCCCEEEEeCCCc-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence            44566789999999999877 7888888887663 499999999988777765211               1  122211


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      -   .+.   +..+..+.||+|+-....+ ..+..+.+.|+++ |.++.+..
T Consensus       176 ~---~~~---~~~~~~~~fD~V~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  220 (336)
T 2b25_A          176 I---SGA---TEDIKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYVV  220 (336)
T ss_dssp             T---TCC---C-------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEES
T ss_pred             h---HHc---ccccCCCCeeEEEECCCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence            1   111   0111223799998655544 3378899999997 99987653

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.69  E-value=0.00014  Score=66.09  Aligned_cols=94  Identities=19%  Similarity=0.239  Sum_probs=72.3

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      --.|.+|+|+|.|.+|..+++.++.+|+ +|++.+++.++.+.+.++|+.. ++.     .++.+.+     .+.|+|+.
T Consensus       152 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~-~~~-----~~l~~~l-----~~aDvVi~  219 (293)
T 3d4o_A          152 TIHGANVAVLGLGRVGMSVARKFAALGA-KVKVGARESDLLARIAEMGMEP-FHI-----SKAAQEL-----RDVDVCIN  219 (293)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTSEE-EEG-----GGHHHHT-----TTCSEEEE
T ss_pred             CCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHCCCee-cCh-----hhHHHHh-----cCCCEEEE
Confidence            3468999999999999999999999999 9999999988877777788753 221     2233222     27999999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +++....-...+..++++ +.++.++.
T Consensus       220 ~~p~~~i~~~~l~~mk~~-~~lin~ar  245 (293)
T 3d4o_A          220 TIPALVVTANVLAEMPSH-TFVIDLAS  245 (293)
T ss_dssp             CCSSCCBCHHHHHHSCTT-CEEEECSS
T ss_pred             CCChHHhCHHHHHhcCCC-CEEEEecC
Confidence            997643224677888997 99998885

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.62  E-value=0.00072  Score=53.98  Aligned_cols=95  Identities=11%  Similarity=0.105  Sum_probs=67.9

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc-CCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN-SKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~-~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .++|+|.|.|.+|..+++.++..|+ +|+++++++++.+.+++.|...+.- ..+   .   +.+.+..-.++|+++-++
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~g~~~i~gd~~~---~---~~l~~a~i~~ad~vi~~~   79 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRERGVRAVLGNAAN---E---EIMQLAHLECAKWLILTI   79 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEESCTTS---H---HHHHHTTGGGCSEEEECC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHcCCCEEECCCCC---H---HHHHhcCcccCCEEEEEC
Confidence            4689999999999999999999999 9999999999999998888865442 222   2   233333112899999999


Q ss_pred             CCHHHHH---HHHHHhhcCCceEEEEc
Q 016507          281 GLASLVQ---EAYACCRKGWGKTIVLG  304 (388)
Q Consensus       281 g~~~~~~---~~~~~l~~~~G~~v~~g  304 (388)
                      +.+....   ...+.+.+. .+++.-.
T Consensus        80 ~~~~~n~~~~~~a~~~~~~-~~iiar~  105 (140)
T 3fwz_A           80 PNGYEAGEIVASARAKNPD-IEIIARA  105 (140)
T ss_dssp             SCHHHHHHHHHHHHHHCSS-SEEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCC-CeEEEEE
Confidence            9875322   334445454 5555443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.49  E-value=0.00026  Score=64.52  Aligned_cols=94  Identities=18%  Similarity=0.232  Sum_probs=71.6

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      --.+.+|+|+|.|.+|..+++.++.+|+ +|++.+++.++.+.+.++|+. +++.     .++.+.+     .+.|+|+.
T Consensus       154 ~l~g~~v~IiG~G~iG~~~a~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~-~~~~-----~~l~~~l-----~~aDvVi~  221 (300)
T 2rir_A          154 TIHGSQVAVLGLGRTGMTIARTFAALGA-NVKVGARSSAHLARITEMGLV-PFHT-----DELKEHV-----KDIDICIN  221 (300)
T ss_dssp             CSTTSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCE-EEEG-----GGHHHHS-----TTCSEEEE
T ss_pred             CCCCCEEEEEcccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCCCe-EEch-----hhHHHHh-----hCCCEEEE
Confidence            3468999999999999999999999999 999999998887766677764 3322     2232222     27999999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +++....-...+..++++ +.++.++.
T Consensus       222 ~~p~~~i~~~~~~~mk~g-~~lin~a~  247 (300)
T 2rir_A          222 TIPSMILNQTVLSSMTPK-TLILDLAS  247 (300)
T ss_dssp             CCSSCCBCHHHHTTSCTT-CEEEECSS
T ss_pred             CCChhhhCHHHHHhCCCC-CEEEEEeC
Confidence            998643224567788887 88998885

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=97.46  E-value=0.00023  Score=62.95  Aligned_cols=102  Identities=17%  Similarity=0.228  Sum_probs=72.7

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHc----CCcE-E-EcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GVTE-F-VNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~l----ga~~-v-~~~~~~~~~~~~~~i  265 (388)
                      +.....+.++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++.    |... + +-..     ++.+. 
T Consensus        85 i~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~-----d~~~~-  157 (255)
T 3mb5_A           85 IVAYAGISPGDFIVEAGVGS-GALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLK-----DIYEG-  157 (255)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECS-----CGGGC-
T ss_pred             HHHhhCCCCCCEEEEecCCc-hHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEEC-----chhhc-
Confidence            55677889999999999876 888888888853 33999999999888777653    5432 1 1111     22111 


Q ss_pred             HhhcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEc
Q 016507          266 IDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g  304 (388)
                        +..+.||+|+...+.. ..+..+.+.|+++ |.++.+.
T Consensus       158 --~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~  194 (255)
T 3mb5_A          158 --IEEENVDHVILDLPQPERVVEHAAKALKPG-GFFVAYT  194 (255)
T ss_dssp             --CCCCSEEEEEECSSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             --cCCCCcCEEEECCCCHHHHHHHHHHHcCCC-CEEEEEE
Confidence              2223799999877665 2488999999997 9998774

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.45  E-value=0.0012  Score=52.48  Aligned_cols=76  Identities=13%  Similarity=0.224  Sum_probs=58.3

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      ..+|+|+|+|.+|..+++.+...|+ +|+++++++++.+.++..+...+. |..+      .+.+.+..-.++|+||.++
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~~~~~~~gd~~~------~~~l~~~~~~~~d~vi~~~   78 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDEGFDAVIADPTD------ESFYRSLDLEGVSAVLITG   78 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTTCEEEECCTTC------HHHHHHSCCTTCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHCCCcEEECCCCC------HHHHHhCCcccCCEEEEec
Confidence            4679999999999999999999999 999999999999888887765443 2222      2334443223899999999


Q ss_pred             CCHH
Q 016507          281 GLAS  284 (388)
Q Consensus       281 g~~~  284 (388)
                      +...
T Consensus        79 ~~~~   82 (141)
T 3llv_A           79 SDDE   82 (141)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            9765

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.44  E-value=0.00052  Score=64.93  Aligned_cols=92  Identities=17%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .-.|++|+|+|.|.||..+++.++.+|+ +|+++++++.+...+...|+. +.        ++.+.+.     ..|+|+.
T Consensus       244 ~L~GKTVgVIG~G~IGr~vA~~lrafGa-~Viv~d~dp~~a~~A~~~G~~-vv--------~LeElL~-----~ADIVv~  308 (464)
T 3n58_A          244 MMAGKVAVVCGYGDVGKGSAQSLAGAGA-RVKVTEVDPICALQAAMDGFE-VV--------TLDDAAS-----TADIVVT  308 (464)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCE-EC--------CHHHHGG-----GCSEEEE
T ss_pred             cccCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCcchhhHHHhcCce-ec--------cHHHHHh-----hCCEEEE
Confidence            4579999999999999999999999999 999999888766555556654 21        2333222     6899999


Q ss_pred             ccCCHHHH-HHHHHHhhcCCceEEEEccC
Q 016507          279 CVGLASLV-QEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       279 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +.+....+ ...+..++++ +.++.+|..
T Consensus       309 atgt~~lI~~e~l~~MK~G-AILINvGRg  336 (464)
T 3n58_A          309 TTGNKDVITIDHMRKMKDM-CIVGNIGHF  336 (464)
T ss_dssp             CCSSSSSBCHHHHHHSCTT-EEEEECSSS
T ss_pred             CCCCccccCHHHHhcCCCC-eEEEEcCCC
Confidence            99876533 6889999997 888888863

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.35  E-value=0.00056  Score=64.73  Aligned_cols=112  Identities=17%  Similarity=0.172  Sum_probs=81.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .-.|.+|+|+|.|.+|...++.++.+|+ +|+++++++.+...+...|...         .++.+.+.     ..|+|+.
T Consensus       208 ~L~GktVgIiG~G~IG~~vA~~Lka~Ga-~Viv~D~~p~~a~~A~~~G~~~---------~sL~eal~-----~ADVVil  272 (436)
T 3h9u_A          208 MIAGKTACVCGYGDVGKGCAAALRGFGA-RVVVTEVDPINALQAAMEGYQV---------LLVEDVVE-----EAHIFVT  272 (436)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---------CCHHHHTT-----TCSEEEE
T ss_pred             cccCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCChhhhHHHHHhCCee---------cCHHHHHh-----hCCEEEE
Confidence            3468999999999999999999999999 8999999887776666667542         12333332     6899999


Q ss_pred             ccCCHHHHH-HHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          279 CVGLASLVQ-EAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       279 ~~g~~~~~~-~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      +.+....+. ..+..++++ ..++.+|.    ....++...+..+..++.+..
T Consensus       273 t~gt~~iI~~e~l~~MK~g-AIVINvgR----g~vEID~~~L~~~~~~~~~ir  320 (436)
T 3h9u_A          273 TTGNDDIITSEHFPRMRDD-AIVCNIGH----FDTEIQVAWLKANAKERVEVK  320 (436)
T ss_dssp             CSSCSCSBCTTTGGGCCTT-EEEEECSS----SGGGBCHHHHHHHCSEEEEEE
T ss_pred             CCCCcCccCHHHHhhcCCC-cEEEEeCC----CCCccCHHHHHhhcCceEeec
Confidence            887654333 678888987 88888874    234566666655555555443

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.33  E-value=0.0008  Score=53.51  Aligned_cols=76  Identities=14%  Similarity=0.342  Sum_probs=55.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +.+|+|+|+|.+|..+++.+...|+ +|+++++++++.+.+++.+...+. .+.   .+ .+.+.+..-+++|+|+.+++
T Consensus         6 ~~~v~I~G~G~iG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~-~d~---~~-~~~l~~~~~~~~d~vi~~~~   79 (144)
T 2hmt_A            6 NKQFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVI-ANA---TE-ENELLSLGIRNFEYVIVAIG   79 (144)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHTTTTTCSEEEE-CCT---TC-HHHHHTTTGGGCSEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCCEEEE-eCC---CC-HHHHHhcCCCCCCEEEECCC
Confidence            5679999999999999999999998 899999988887777666654332 111   11 23333331237999999999


Q ss_pred             CH
Q 016507          282 LA  283 (388)
Q Consensus       282 ~~  283 (388)
                      .+
T Consensus        80 ~~   81 (144)
T 2hmt_A           80 AN   81 (144)
T ss_dssp             SC
T ss_pred             Cc
Confidence            74

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.27  E-value=0.00038  Score=66.93  Aligned_cols=98  Identities=17%  Similarity=0.228  Sum_probs=73.2

Q ss_pred             HHHhcCC-CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC
Q 016507          193 AWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       193 l~~~~~~-~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      +.+..+. -.|.+|+|+|+|.+|.+.++.++..|+ +|+++++++.+.+.+...|++ +.+.     .+       . ..
T Consensus       255 i~r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa~GA-~Viv~D~~~~~a~~Aa~~g~d-v~~l-----ee-------~-~~  319 (488)
T 3ond_A          255 LMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGA-RVIVTEIDPICALQATMEGLQ-VLTL-----ED-------V-VS  319 (488)
T ss_dssp             HHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-ECCG-----GG-------T-TT
T ss_pred             HHHHcCCcccCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHhCCc-cCCH-----HH-------H-HH
Confidence            3343343 478999999999999999999999999 999999988887777666653 2111     11       1 12


Q ss_pred             CccEEEEccCCHHHH-HHHHHHhhcCCceEEEEccC
Q 016507          272 GADYCFECVGLASLV-QEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       272 ~~dvvid~~g~~~~~-~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .+|+++++.|....+ ...++.++++ +.++..|..
T Consensus       320 ~aDvVi~atG~~~vl~~e~l~~mk~g-aiVvNaG~~  354 (488)
T 3ond_A          320 EADIFVTTTGNKDIIMLDHMKKMKNN-AIVCNIGHF  354 (488)
T ss_dssp             TCSEEEECSSCSCSBCHHHHTTSCTT-EEEEESSST
T ss_pred             hcCEEEeCCCChhhhhHHHHHhcCCC-eEEEEcCCC
Confidence            789999999876544 3478889997 888888863

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=97.24  E-value=0.0014  Score=58.67  Aligned_cols=103  Identities=18%  Similarity=0.239  Sum_probs=71.8

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHc-----C--CcE--EEcCCCCCCccHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF-----G--VTE--FVNSKNCGDKSVS  262 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~l-----g--a~~--v~~~~~~~~~~~~  262 (388)
                      +.....+.++++||-+|+| .|..++.+++..+ ..+|++++.+++..+.+++.     |  .+.  ++. .+     +.
T Consensus        91 i~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~-~d-----~~  163 (280)
T 1i9g_A           91 IVHEGDIFPGARVLEAGAG-SGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV-SD-----LA  163 (280)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC-SC-----GG
T ss_pred             HHHHcCCCCCCEEEEEccc-ccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEE-Cc-----hH
Confidence            4566788999999999988 6888888998753 23999999999888777653     4  221  222 11     11


Q ss_pred             HHHHhhcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          263 QIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       263 ~~i~~~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.  .+..+.||+|+.....+ ..+..+.+.|+++ |.++.+..
T Consensus       164 ~~--~~~~~~~D~v~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  204 (280)
T 1i9g_A          164 DS--ELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYVA  204 (280)
T ss_dssp             GC--CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             hc--CCCCCceeEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence            11  01123799998766655 4578999999997 99887753

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.11  E-value=0.0031  Score=54.82  Aligned_cols=99  Identities=13%  Similarity=0.093  Sum_probs=66.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+...++..++.-+-      .+.+.+.. +++|+||++
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~~~~~~~~~~Dl------~~~~~~~~-~~~D~vi~~   91 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRERGASDIVVANL------EEDFSHAF-ASIDAVVFA   91 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHTTCSEEEECCT------TSCCGGGG-TTCSEEEEC
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHhCCCceEEEccc------HHHHHHHH-cCCCEEEEC
Confidence            4679999998 9999999999888899 9999999999888777667622332211      12223322 279999999


Q ss_pred             cCCHH-------------HHHHHHHHhhc-CCceEEEEccCC
Q 016507          280 VGLAS-------------LVQEAYACCRK-GWGKTIVLGVDQ  307 (388)
Q Consensus       280 ~g~~~-------------~~~~~~~~l~~-~~G~~v~~g~~~  307 (388)
                      .|...             ....+++.+.. +.++++.++...
T Consensus        92 ag~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~  133 (236)
T 3e8x_A           92 AGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVG  133 (236)
T ss_dssp             CCCCTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTT
T ss_pred             CCCCCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence            98531             12233333332 126899888754

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=97.01  E-value=0.0014  Score=55.93  Aligned_cols=101  Identities=18%  Similarity=0.213  Sum_probs=71.1

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i  265 (388)
                      +.....+.++++||-+|.|. |..++.+++. +. +|++++.+++..+.+++    +|.+   .++..+-   .+   .+
T Consensus        47 ~l~~l~~~~~~~vLDlGcG~-G~~~~~la~~-~~-~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~---~~---~~  117 (204)
T 3njr_A           47 TLAALAPRRGELLWDIGGGS-GSVSVEWCLA-GG-RAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTA---PA---AL  117 (204)
T ss_dssp             HHHHHCCCTTCEEEEETCTT-CHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCT---TG---GG
T ss_pred             HHHhcCCCCCCEEEEecCCC-CHHHHHHHHc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCch---hh---hc
Confidence            44566788999999999876 8888888888 77 99999999988877664    3543   2332221   11   11


Q ss_pred             HhhcCCCccEEEEccCCHH-HHHHHHHHhhcCCceEEEEcc
Q 016507          266 IDMTDGGADYCFECVGLAS-LVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~~-~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ..  .+.||+|+...+... .+..+.+.|+++ |+++....
T Consensus       118 ~~--~~~~D~v~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~~  155 (204)
T 3njr_A          118 AD--LPLPEAVFIGGGGSQALYDRLWEWLAPG-TRIVANAV  155 (204)
T ss_dssp             TT--SCCCSEEEECSCCCHHHHHHHHHHSCTT-CEEEEEEC
T ss_pred             cc--CCCCCEEEECCcccHHHHHHHHHhcCCC-cEEEEEec
Confidence            11  127999987654332 578999999998 99987654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.93  E-value=0.014  Score=45.87  Aligned_cols=75  Identities=16%  Similarity=0.240  Sum_probs=53.7

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      -+|+|+|+|.+|...++.+...|. +|+++++++++.+.+.+ ++...+. +..+      .+.+.+..-.++|+||.++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~------~~~l~~~~~~~~d~vi~~~   77 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVINGDCTK------IKTLEDAGIEDADMYIAVT   77 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEESCTTS------HHHHHHTTTTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhcCcEEEEcCCCC------HHHHHHcCcccCCEEEEee
Confidence            479999999999999998888898 89999998888776654 5664332 2221      1223322123799999999


Q ss_pred             CCHH
Q 016507          281 GLAS  284 (388)
Q Consensus       281 g~~~  284 (388)
                      +...
T Consensus        78 ~~~~   81 (140)
T 1lss_A           78 GKEE   81 (140)
T ss_dssp             SCHH
T ss_pred             CCch
Confidence            9875

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=96.86  E-value=0.0078  Score=53.54  Aligned_cols=79  Identities=24%  Similarity=0.284  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcEE-E--cCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF-V--NSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~v-~--~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ +.++.... +  |-.+  .+.+.+.+.+...  +++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGA-IVGLHGTREDKLKEIAADLGKDVFVFSANLSD--RKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTS--HHHHHHHHHHHHHHHTSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEeecCC--HHHHHHHHHHHHHHcCCC
Confidence            5788999987 9999999999888999 899999988776544 44554332 2  3222  1222222222211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus       103 D~lvnnAg~  111 (266)
T 3grp_A          103 DILVNNAGI  111 (266)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.84  E-value=0.014  Score=50.02  Aligned_cols=97  Identities=11%  Similarity=0.027  Sum_probs=62.1

Q ss_pred             CEEEEEcc-chhHHHHHHHHH-HcCCcEEEEEcCCch-HHHHHHHc--CCcEE-EcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          203 STVVIFGL-GSIGLAVAEGAR-LCGATRIIGVDVISE-KFEIGKRF--GVTEF-VNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~-~~g~~~Vi~~~~~~~-~~~~~~~l--ga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .+|||+|+ |.+|...++.+. ..|+ +|++++++++ +.+.+...  ++..+ .|-.+   .   +.+.+... ++|+|
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d---~---~~~~~~~~-~~d~v   77 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDM-HITLYGRQLKTRIPPEIIDHERVTVIEGSFQN---P---GXLEQAVT-NAEVV   77 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCC-EEEEEESSHHHHSCHHHHTSTTEEEEECCTTC---H---HHHHHHHT-TCSEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCc-eEEEEecCccccchhhccCCCceEEEECCCCC---H---HHHHHHHc-CCCEE
Confidence            46999997 999999888877 8999 9999999887 66554322  22222 23222   2   23333322 78999


Q ss_pred             EEccCCHH-HHHHHHHHhhcC-CceEEEEccCC
Q 016507          277 FECVGLAS-LVQEAYACCRKG-WGKTIVLGVDQ  307 (388)
Q Consensus       277 id~~g~~~-~~~~~~~~l~~~-~G~~v~~g~~~  307 (388)
                      |++.|... ....+++.+... .++++.++...
T Consensus        78 v~~ag~~n~~~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           78 FVGAMESGSDMASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             EESCCCCHHHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred             EEcCCCCChhHHHHHHHHHhcCCCeEEEEeece
Confidence            99998631 134455555442 25888887643

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=96.84  E-value=0.0043  Score=54.53  Aligned_cols=77  Identities=10%  Similarity=0.052  Sum_probs=52.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE---EcCCCCCCccHHHHHHhhcC--CCccEE
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF---VNSKNCGDKSVSQIIIDMTD--GGADYC  276 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v---~~~~~~~~~~~~~~i~~~~~--g~~dvv  276 (388)
                      .+|||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+-+....   .|-.+  .++..+.+.+...  |+.|++
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~v~~~~~~~g~iDiL   79 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGD-KVCFIDIDEKRSADFAKERPNLFYFHGDVAD--PLTLKKFVEYAMEKLQRIDVL   79 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcCCEEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            68999987 9999999999999999 99999999888776655443322   23222  1222222222222  379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      +++.|.
T Consensus        80 VNNAG~   85 (247)
T 3ged_A           80 VNNACR   85 (247)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            998863

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=96.82  E-value=0.0045  Score=50.99  Aligned_cols=105  Identities=21%  Similarity=0.203  Sum_probs=71.7

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-EEEcCCCCCCccHHHHHHh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~i~~  267 (388)
                      +.....+.++++||-+|.|. |..+..+++..+..+|++++.+++..+.+++    .+.. .++-..+     ..+.+..
T Consensus        17 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d-----~~~~~~~   90 (178)
T 3hm2_A           17 AISALAPKPHETLWDIGGGS-GSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQG-----APRAFDD   90 (178)
T ss_dssp             HHHHHCCCTTEEEEEESTTT-THHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECC-----TTGGGGG
T ss_pred             HHHHhcccCCCeEEEeCCCC-CHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecc-----hHhhhhc
Confidence            34556788999999999876 8888898887643499999999988877764    3443 2221121     1111111


Q ss_pred             hcCCCccEEEEccCCH--HHHHHHHHHhhcCCceEEEEcc
Q 016507          268 MTDGGADYCFECVGLA--SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       268 ~~~g~~dvvid~~g~~--~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       ..+.||+|+......  ..+..+.+.|+++ |.++....
T Consensus        91 -~~~~~D~i~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  128 (178)
T 3hm2_A           91 -VPDNPDVIFIGGGLTAPGVFAAAWKRLPVG-GRLVANAV  128 (178)
T ss_dssp             -CCSCCSEEEECC-TTCTTHHHHHHHTCCTT-CEEEEEEC
T ss_pred             -cCCCCCEEEECCcccHHHHHHHHHHhcCCC-CEEEEEee
Confidence             114799999765443  3589999999998 99987653

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.82  E-value=0.011  Score=49.61  Aligned_cols=100  Identities=21%  Similarity=0.255  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCC---------cEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhh
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGA---------TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~---------~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      .++++++||.+|+|+ |..++.+++..+.         .+|++++.++...  +  -.+ ..++..+.......+.+.+.
T Consensus        19 ~~~~~~~vLDlGcG~-G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~--~--~~~-~~~~~~d~~~~~~~~~~~~~   92 (196)
T 2nyu_A           19 ILRPGLRVLDCGAAP-GAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP--L--EGA-TFLCPADVTDPRTSQRILEV   92 (196)
T ss_dssp             CCCTTCEEEEETCCS-CHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC--C--TTC-EEECSCCTTSHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCC-CHHHHHHHHHhccccccccCCCceEEEEechhccc--C--CCC-eEEEeccCCCHHHHHHHHHh
Confidence            367899999999988 9999999998763         4899999987531  0  112 23311111112334444444


Q ss_pred             cCC-CccEEEE-----ccCCH------------HHHHHHHHHhhcCCceEEEEc
Q 016507          269 TDG-GADYCFE-----CVGLA------------SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       269 ~~g-~~dvvid-----~~g~~------------~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ..+ .||+|+.     +++..            ..+..+.+.|+++ |+++...
T Consensus        93 ~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~lv~~~  145 (196)
T 2nyu_A           93 LPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPG-GTFLCKT  145 (196)
T ss_dssp             SGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             cCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCC-CEEEEEe
Confidence            444 8999994     33332            3467789999997 9988764

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=96.81  E-value=0.009  Score=55.26  Aligned_cols=96  Identities=19%  Similarity=0.189  Sum_probs=61.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-------------EcCCCCCCccHHHHHH
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-------------VNSKNCGDKSVSQIII  266 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-------------~~~~~~~~~~~~~~i~  266 (388)
                      -.|.+|+|.|.|.+|+.+++.++.+|+ +|++.+.++.+.++.+.++++.+             +.... ...--.+.+.
T Consensus       173 L~GktV~I~G~GnVG~~~A~~l~~~Ga-kVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~A~-~~~I~~~~~~  250 (355)
T 1c1d_A          173 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCAM-GGVITTEVAR  250 (355)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECSC-SCCBCHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHhHH-HhhcCHHHHh
Confidence            478999999999999999999999999 99999888776666666776433             11000 0000112222


Q ss_pred             hhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEE
Q 016507          267 DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI  301 (388)
Q Consensus       267 ~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v  301 (388)
                      .+   +.++|+++...+...+++.+.|..+ |.++
T Consensus       251 ~l---k~~iVie~AN~p~t~~eA~~~L~~~-gIlv  281 (355)
T 1c1d_A          251 TL---DCSVVAGAANNVIADEAASDILHAR-GILY  281 (355)
T ss_dssp             HC---CCSEECCSCTTCBCSHHHHHHHHHT-TCEE
T ss_pred             hC---CCCEEEECCCCCCCCHHHHHHHHhC-CEEE
Confidence            22   5677777776654223556666665 6554

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.80  E-value=0.0057  Score=57.20  Aligned_cols=92  Identities=18%  Similarity=0.170  Sum_probs=67.6

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|+|+|+|.+|..+++.+.. .. .|.+.+++.++.+.++.......+|..+      .+.+.++.. +.|+|++|++..
T Consensus        18 kilvlGaG~vG~~~~~~L~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~d~~d------~~~l~~~~~-~~DvVi~~~p~~   88 (365)
T 3abi_A           18 KVLILGAGNIGRAIAWDLKD-EF-DVYIGDVNNENLEKVKEFATPLKVDASN------FDKLVEVMK-EFELVIGALPGF   88 (365)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHTTTSEEEECCTTC------HHHHHHHHT-TCSEEEECCCGG
T ss_pred             EEEEECCCHHHHHHHHHHhc-CC-CeEEEEcCHHHHHHHhccCCcEEEecCC------HHHHHHHHh-CCCEEEEecCCc
Confidence            69999999999998887743 45 7888899998888877654333455444      223333332 789999999987


Q ss_pred             HHHHHHHHHhhcCCceEEEEcc
Q 016507          284 SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       284 ~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .....+-.|+..+ -+++.+..
T Consensus        89 ~~~~v~~~~~~~g-~~yvD~s~  109 (365)
T 3abi_A           89 LGFKSIKAAIKSK-VDMVDVSF  109 (365)
T ss_dssp             GHHHHHHHHHHHT-CEEEECCC
T ss_pred             ccchHHHHHHhcC-cceEeeec
Confidence            6677788888887 88888754

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.80  E-value=0.0068  Score=51.34  Aligned_cols=103  Identities=15%  Similarity=0.141  Sum_probs=71.7

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i~  266 (388)
                      +.....+.++++||-+|.|. |..++.+++.....+|++++.+++..+.+++    .+.+.  ++..+-      .+.+.
T Consensus        32 ~l~~l~~~~~~~vLDiG~G~-G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~------~~~~~  104 (204)
T 3e05_A           32 TLSKLRLQDDLVMWDIGAGS-ASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFA------PEGLD  104 (204)
T ss_dssp             HHHHTTCCTTCEEEEETCTT-CHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCT------TTTCT
T ss_pred             HHHHcCCCCCCEEEEECCCC-CHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCCh------hhhhh
Confidence            44667888999999999875 8888889988644499999999988877765    34322  222211      11111


Q ss_pred             hhcCCCccEEEEccC---CHHHHHHHHHHhhcCCceEEEEcc
Q 016507          267 DMTDGGADYCFECVG---LASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       267 ~~~~g~~dvvid~~g---~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .  .+.||+|+....   ....+..+.+.|+++ |.++....
T Consensus       105 ~--~~~~D~i~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  143 (204)
T 3e05_A          105 D--LPDPDRVFIGGSGGMLEEIIDAVDRRLKSE-GVIVLNAV  143 (204)
T ss_dssp             T--SCCCSEEEESCCTTCHHHHHHHHHHHCCTT-CEEEEEEC
T ss_pred             c--CCCCCEEEECCCCcCHHHHHHHHHHhcCCC-eEEEEEec
Confidence            1  137999998765   234578899999998 99988753

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.80  E-value=0.0057  Score=55.80  Aligned_cols=91  Identities=22%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             CEEEEEccchhHHHHHHHH-H-HcCCcEEEEEcCCchH--HHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEE
Q 016507          203 STVVIFGLGSIGLAVAEGA-R-LCGATRIIGVDVISEK--FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCF  277 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la-~-~~g~~~Vi~~~~~~~~--~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvi  277 (388)
                      -+|.|+|+|.+|...+..+ + ..+++-+.+.++++++  .++++.+|.....       .++ +.+.+.+.+ ++|+||
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~-------~~~-e~ll~~~~~~~iDvV~   76 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY-------AGV-EGLIKLPEFADIDFVF   76 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES-------SHH-HHHHHSGGGGGEEEEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCccc-------CCH-HHHHhccCCCCCcEEE
Confidence            4799999999999888877 4 4566445556666555  5667778865221       122 334333333 799999


Q ss_pred             EccCCHHHHHHHHHHhhc--CCceEEE
Q 016507          278 ECVGLASLVQEAYACCRK--GWGKTIV  302 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~~--~~G~~v~  302 (388)
                      +|++.....+.+..++..  + .++++
T Consensus        77 ~atp~~~h~~~a~~al~a~~G-k~Vi~  102 (312)
T 1nvm_B           77 DATSASAHVQNEALLRQAKPG-IRLID  102 (312)
T ss_dssp             ECSCHHHHHHHHHHHHHHCTT-CEEEE
T ss_pred             ECCChHHHHHHHHHHHHhCCC-CEEEE
Confidence            999987778888888888  7 77766

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=96.79  E-value=0.0087  Score=53.05  Aligned_cols=79  Identities=16%  Similarity=0.269  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-ch--hHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCC--cEE--EcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV--TEF--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~--vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga--~~v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      .+.++||+|+ |.  +|.+.++.+...|+ +|++++++++..+.+.+    ++.  -.+  .|-.+  .+.+.+.+.+..
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~   82 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTN--DAEIETCFASIK   82 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSS--SHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCC--HHHHHHHHHHHH
Confidence            4688999986 66  99998888888899 89999888755444433    332  112  23333  233333333332


Q ss_pred             C--CCccEEEEccCC
Q 016507          270 D--GGADYCFECVGL  282 (388)
Q Consensus       270 ~--g~~dvvid~~g~  282 (388)
                      .  +++|+++++.|.
T Consensus        83 ~~~g~id~li~~Ag~   97 (266)
T 3oig_A           83 EQVGVIHGIAHCIAF   97 (266)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCeeEEEEcccc
Confidence            2  379999998874

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=96.75  E-value=0.0085  Score=53.74  Aligned_cols=102  Identities=22%  Similarity=0.277  Sum_probs=63.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-HH----HHHHcCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FE----IGKRFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-~~----~~~~lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++ .+    .++..+... .  .|-.+  .+++.+.+.+... 
T Consensus        28 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~  104 (283)
T 1g0o_A           28 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGV--VEDIVRMFEEAVKI  104 (283)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 89998887643 22    223345432 2  23222  1223332222211 


Q ss_pred             -CCccEEEEccCCH----------H---------------HHHHHHHHhhcCCceEEEEccC
Q 016507          271 -GGADYCFECVGLA----------S---------------LVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       271 -g~~dvvid~~g~~----------~---------------~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       +++|++|++.|..          .               ..+.++..+..+ |+++.++..
T Consensus       105 ~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~  165 (283)
T 1g0o_A          105 FGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI  165 (283)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred             cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcC-CeEEEEech
Confidence             3799999998742          1               123445555565 899998864

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.75  E-value=0.0053  Score=54.19  Aligned_cols=78  Identities=21%  Similarity=0.298  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE--cCCCCCCccHHHHHHhhc--CCCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV--NSKNCGDKSVSQIIIDMT--DGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~--~~~~~~~~~~~~~i~~~~--~g~~dv  275 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+..+.++. ..+  |-.+  .+++.+.+.+..  .+++|+
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~D~~~--~~~~~~~~~~~~~~~g~iD~   80 (256)
T 2d1y_A            5 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGG-AFFQVDLED--ERERVRFVEEAAYALGRVDV   80 (256)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTC-EEEECCTTC--HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHhhC-CEEEeeCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4678999987 9999999998888899 89999988777444444432 333  3332  122333333221  137999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      +|++.|.
T Consensus        81 lv~~Ag~   87 (256)
T 2d1y_A           81 LVNNAAI   87 (256)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999873

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.74  E-value=0.0093  Score=53.86  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcc-ch--hHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEEE--cCCCCCCccHHHHHHhhc-
Q 016507          200 EVGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFV--NSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~--vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v~--~~~~~~~~~~~~~i~~~~-  269 (388)
                      -.+.++||+|+ |.  +|.+.++.+...|+ +|++++++++..+.++    ..+....+  |-.+  .+.+.+.+.+.. 
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVAD--AASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHH
Confidence            46789999986 66  99999998888899 8999988865443333    23422222  3333  122332222221 


Q ss_pred             -CCCccEEEEccCCHH-----------------------------HHHHHHHHhhcCCceEEEEccC
Q 016507          270 -DGGADYCFECVGLAS-----------------------------LVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       270 -~g~~dvvid~~g~~~-----------------------------~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       .|++|++|++.|...                             ..+.++..+..+ |+++.++..
T Consensus       106 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~-g~Iv~isS~  171 (293)
T 3grk_A          106 KWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADG-GSILTLTYY  171 (293)
T ss_dssp             HTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTC-EEEEEEECG
T ss_pred             hcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCC-CEEEEEeeh
Confidence             237999999988421                             123445556676 999998764

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=96.73  E-value=0.0075  Score=54.34  Aligned_cols=77  Identities=25%  Similarity=0.246  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcE-E--EcCCCCCCccHHHHHHhhcCCCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE-F--VNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~-v--~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+.+ ++... .  .|-.+  .+.+.+.+.+.  +++|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~--~~iD~   89 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGA-TVIMAVRDTRKGEAAARTMAGQVEVRELDLQD--LSSVRRFADGV--SGADV   89 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHTTSSSEEEEEECCTTC--HHHHHHHHHTC--CCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCeeEEEcCCCC--HHHHHHHHHhc--CCCCE
Confidence            5789999987 9999999998888899 99999999887765543 44322 2  23332  12232223222  47999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      +|++.|.
T Consensus        90 lv~nAg~   96 (291)
T 3rd5_A           90 LINNAGI   96 (291)
T ss_dssp             EEECCCC
T ss_pred             EEECCcC
Confidence            9999884

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=96.72  E-value=0.0046  Score=54.22  Aligned_cols=82  Identities=22%  Similarity=0.182  Sum_probs=53.3

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEEEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      ..++.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+. .+.....+..-+..+.+..+.+.+.. +++|++
T Consensus        11 ~~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~id~l   88 (249)
T 3f9i_A           11 DLTGKTSLITGASSGIGSAIARLLHKLGS-KVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKT-SNLDIL   88 (249)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTC-SCCSEE
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhc-CCCCEE
Confidence            456789999987 9999999998888899 8999999888766544 34333222221211122222222221 379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.|.
T Consensus        89 i~~Ag~   94 (249)
T 3f9i_A           89 VCNAGI   94 (249)
T ss_dssp             EECCC-
T ss_pred             EECCCC
Confidence            999884

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=96.71  E-value=0.013  Score=51.63  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE-EE--cCCCCCCccHHHHHHhhc--CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-FV--NSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~-v~--~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ +.++... .+  |-.+  .+.+.+.+.+..  .+++
T Consensus         5 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   81 (253)
T 1hxh_A            5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSS--EADWTLVMAAVQRRLGTL   81 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTC--HHHHHHHHHHHHHHHCSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999998888899 899999988766543 3344322 22  2222  122332232221  1378


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        82 d~lv~~Ag~   90 (253)
T 1hxh_A           82 NVLVNNAGI   90 (253)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=96.70  E-value=0.0053  Score=54.82  Aligned_cols=102  Identities=23%  Similarity=0.251  Sum_probs=69.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCCcEE---EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEF---VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga~~v---~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|+++++++++.+. ++++|....   .|-.+  .++..+.+.+...  |+.
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G~i  104 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIGGGAVGIQADSAN--LAELDRLYEKVKAEAGRI  104 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHSCE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            6788999987 9999999999999999 99999999887764 445665332   23333  1222222222221  379


Q ss_pred             cEEEEccCCH-------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          274 DYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       274 dvvid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      |+++++.|..                         ...+.++..++.+ |+++.++..
T Consensus       105 DiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~-G~IInisS~  161 (273)
T 4fgs_A          105 DVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARG-SSVVLTGST  161 (273)
T ss_dssp             EEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEECCG
T ss_pred             CEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhC-CeEEEEeeh
Confidence            9999988742                         2234556667775 999998764

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.70  E-value=0.01  Score=54.86  Aligned_cols=131  Identities=15%  Similarity=0.152  Sum_probs=81.6

Q ss_pred             CEEEEEccchhHHHHHHHHH-H-cCCcEEEEEcCCchHHHH-HHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          203 STVVIFGLGSIGLAVAEGAR-L-CGATRIIGVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~-~-~g~~~Vi~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      -+|.|+|.|.+|...++.++ . .+++-+.+.++++++.+. ++.+|+..+++       ++.+.+..   .++|+|+.|
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~-------~~~~~l~~---~~~D~V~i~   78 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYT-------NYKDMIDT---ENIDAIFIV   78 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEES-------CHHHHHTT---SCCSEEEEC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccC-------CHHHHhcC---CCCCEEEEe
Confidence            47999999999998888776 4 466234456777777654 45578755542       23333221   279999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH---H---H-hc-CcEEEEeeecCCCccCcHHHHHHHHhCCC
Q 016507          280 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE---V---L-HS-GKILMGSLFGGLKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~---~---~-~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  351 (388)
                      ++.....+.+..++..  |+-+.+.     +++..+...   +   . .+ ++.+.-.....  ....++.+.+++.+|.
T Consensus        79 tp~~~h~~~~~~al~~--G~~v~~e-----Kp~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r--~~p~~~~~~~~i~~g~  149 (346)
T 3cea_A           79 APTPFHPEMTIYAMNA--GLNVFCE-----KPLGLDFNEVDEMAKVIKSHPNQIFQSGFMRR--YDDSYRYAKKIVDNGD  149 (346)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEEC-----SCCCSCHHHHHHHHHHHHTCTTSCEECCCGGG--TCHHHHHHHHHHHTTT
T ss_pred             CChHhHHHHHHHHHHC--CCEEEEc-----CCCCCCHHHHHHHHHHHHhCCCCeEEEecccc--cCHHHHHHHHHHHcCC
Confidence            9988778888888887  4545453     233334332   2   1 23 44443222111  2345788888998885


Q ss_pred             C
Q 016507          352 L  352 (388)
Q Consensus       352 ~  352 (388)
                      +
T Consensus       150 i  150 (346)
T 3cea_A          150 I  150 (346)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.70  E-value=0.01  Score=52.18  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=32.0

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +.+|+|+|+|++|..+++.+...|+.+++.++.+.
T Consensus        31 ~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           31 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            46899999999999999999999988999999886

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.70  E-value=0.011  Score=50.55  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=62.8

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+...++..+ .|..+   .+. +.   +  +++|+||++.|
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~~D~~d---~~~-~~---~--~~~d~vi~~ag   71 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRLGATVATLVKEPLV---LTE-AD---L--DSVDAVVDALS   71 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHTCTTSEEEECCGGG---CCH-HH---H--TTCSEEEECCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEecccccccccCCCceEEeccccc---ccH-hh---c--ccCCEEEECCc
Confidence            5899998 9999999999988899 99999999887765544455433 23322   222 11   1  37999999998


Q ss_pred             CH----------HHHHHHHHHhhcCCceEEEEcc
Q 016507          282 LA----------SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       282 ~~----------~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ..          .....+++.+....++++.++.
T Consensus        72 ~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           72 VPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             CCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             cCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            62          2244555655553268888853

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.70  E-value=0.01  Score=53.23  Aligned_cols=96  Identities=15%  Similarity=0.097  Sum_probs=63.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|||+|+ |.+|..+++.+... |+ +|+++.+++++.+.+...++..+ .|..+   .   +.+.+... ++|+||.+.
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~g~-~V~~~~R~~~~~~~~~~~~v~~~~~D~~d---~---~~l~~~~~-~~d~vi~~a   73 (289)
T 3e48_A            2 NIMLTGATGHLGTHITNQAIANHID-HFHIGVRNVEKVPDDWRGKVSVRQLDYFN---Q---ESMVEAFK-GMDTVVFIP   73 (289)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCT-TEEEEESSGGGSCGGGBTTBEEEECCTTC---H---HHHHHHTT-TCSEEEECC
T ss_pred             EEEEEcCCchHHHHHHHHHhhCCCC-cEEEEECCHHHHHHhhhCCCEEEEcCCCC---H---HHHHHHHh-CCCEEEEeC
Confidence            5899997 99999999888776 88 89999998887655544455433 23333   2   23333332 799999998


Q ss_pred             CCH-------HHHHHHHHHhhcC-CceEEEEccCC
Q 016507          281 GLA-------SLVQEAYACCRKG-WGKTIVLGVDQ  307 (388)
Q Consensus       281 g~~-------~~~~~~~~~l~~~-~G~~v~~g~~~  307 (388)
                      +..       .....+++.+... -++++.++...
T Consensus        74 ~~~~~~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~~  108 (289)
T 3e48_A           74 SIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYYA  108 (289)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHHTTCCEEEEEEESC
T ss_pred             CCCccchhhHHHHHHHHHHHHHcCCCEEEEEcccC
Confidence            852       2244556666553 14788887654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=96.69  E-value=0.0018  Score=56.37  Aligned_cols=101  Identities=14%  Similarity=0.163  Sum_probs=68.0

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCc---EEEcCCCCCCccHHHHHHh
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~---~v~~~~~~~~~~~~~~i~~  267 (388)
                      ......++.+||-+|+| .|..++.+++.....+|++++.+++..+.+++.    |..   .++..      +..+.+..
T Consensus        48 ~~~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~------d~~~~~~~  120 (233)
T 2gpy_A           48 HLLKMAAPARILEIGTA-IGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFG------DALQLGEK  120 (233)
T ss_dssp             HHHHHHCCSEEEEECCT-TSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECS------CGGGSHHH
T ss_pred             HHHhccCCCEEEEecCC-CcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC------CHHHHHHh
Confidence            34456688999999987 588888899887323999999999888777653    442   12221      12221222


Q ss_pred             hc-CCCccEEEEccCC---HHHHHHHHHHhhcCCceEEEE
Q 016507          268 MT-DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       268 ~~-~g~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      .. .+.||+|+.....   ...+..+.+.|+++ |.++..
T Consensus       121 ~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~  159 (233)
T 2gpy_A          121 LELYPLFDVLFIDAAKGQYRRFFDMYSPMVRPG-GLILSD  159 (233)
T ss_dssp             HTTSCCEEEEEEEGGGSCHHHHHHHHGGGEEEE-EEEEEE
T ss_pred             cccCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence            22 2489999876553   34467888899997 888765

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=96.68  E-value=0.0014  Score=57.13  Aligned_cols=102  Identities=22%  Similarity=0.228  Sum_probs=70.7

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEE-EcCCCCCCccHHHHHHh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v-~~~~~~~~~~~~~~i~~  267 (388)
                      +.+...+.++++||.+|+| .|..++.+++..+. +|++++.+++..+.+++    .|...+ +...     +..   ..
T Consensus        83 ~~~~l~~~~~~~vLdiG~G-~G~~~~~la~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~-----d~~---~~  152 (235)
T 1jg1_A           83 MLEIANLKPGMNILEVGTG-SGWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG-----DGS---KG  152 (235)
T ss_dssp             HHHHHTCCTTCCEEEECCT-TSHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-----CGG---GC
T ss_pred             HHHhcCCCCCCEEEEEeCC-cCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEC-----Ccc---cC
Confidence            4455678899999999988 68889999998774 99999999988777665    343222 1111     111   11


Q ss_pred             hcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          268 MTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       268 ~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +..+ +||+|+...........+.+.|+++ |+++..-.
T Consensus       153 ~~~~~~fD~Ii~~~~~~~~~~~~~~~L~pg-G~lvi~~~  190 (235)
T 1jg1_A          153 FPPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIPVG  190 (235)
T ss_dssp             CGGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred             CCCCCCccEEEECCcHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            1122 5999998776555456888999997 88876543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=96.68  E-value=0.008  Score=52.75  Aligned_cols=79  Identities=23%  Similarity=0.334  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcEEE---cCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFV---NSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~v~---~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ ..++....+   |-.+  .+.+.+.+.+...  |++
T Consensus         5 ~gk~vlVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   81 (247)
T 3rwb_A            5 AGKTALVTGAAQGIGKAIAARLAADGA-TVIVSDINAEGAKAAAASIGKKARAIAADISD--PGSVKALFAEIQALTGGI   81 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEECCCCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHHCCCC
Confidence            5789999987 9999999999989999 899999988776544 345543322   2222  1222222222211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        82 d~lv~nAg~   90 (247)
T 3rwb_A           82 DILVNNASI   90 (247)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.67  E-value=0.013  Score=49.94  Aligned_cols=92  Identities=12%  Similarity=0.178  Sum_probs=63.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|||+|+ |.+|..+++.+...|+ +|+++++++++.+.+. .++..+ .|..+   .+. +.+     +++|+||++.|
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-~~~~~~~~D~~d---~~~-~~~-----~~~d~vi~~ag   70 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH-KDINILQKDIFD---LTL-SDL-----SDQNVVVDAYG   70 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC-SSSEEEECCGGG---CCH-HHH-----TTCSEEEECCC
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc-CCCeEEeccccC---hhh-hhh-----cCCCEEEECCc
Confidence            6999997 9999999999988998 9999999988776554 344332 23222   222 222     37999999998


Q ss_pred             CH--------HHHHHHHHHhhcC-CceEEEEccC
Q 016507          282 LA--------SLVQEAYACCRKG-WGKTIVLGVD  306 (388)
Q Consensus       282 ~~--------~~~~~~~~~l~~~-~G~~v~~g~~  306 (388)
                      ..        .....+++.+... .++++.++..
T Consensus        71 ~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           71 ISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             SSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            63        2245666666653 2678877653

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.67  E-value=0.0015  Score=55.70  Aligned_cols=101  Identities=16%  Similarity=0.051  Sum_probs=70.0

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i~  266 (388)
                      +.+...+.++++||-+|+|. |..+..+++. +. +|++++.+++..+.+++    .+...  ++..+      ..+...
T Consensus        69 ~~~~l~~~~~~~vLdiG~G~-G~~~~~la~~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d------~~~~~~  139 (210)
T 3lbf_A           69 MTELLELTPQSRVLEIGTGS-GYQTAILAHL-VQ-HVCSVERIKGLQWQARRRLKNLDLHNVSTRHGD------GWQGWQ  139 (210)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC------GGGCCG
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEecCHHHHHHHHHHHHHcCCCceEEEECC------cccCCc
Confidence            45667889999999999874 8888888887 66 99999999988877765    34332  22211      111111


Q ss_pred             hhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          267 DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       267 ~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                        ..+.||+|+...........+.+.|+++ |+++..-.
T Consensus       140 --~~~~~D~i~~~~~~~~~~~~~~~~L~pg-G~lv~~~~  175 (210)
T 3lbf_A          140 --ARAPFDAIIVTAAPPEIPTALMTQLDEG-GILVLPVG  175 (210)
T ss_dssp             --GGCCEEEEEESSBCSSCCTHHHHTEEEE-EEEEEEEC
T ss_pred             --cCCCccEEEEccchhhhhHHHHHhcccC-cEEEEEEc
Confidence              1238999998766555456788999997 98876543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=96.63  E-value=0.0032  Score=54.97  Aligned_cols=104  Identities=14%  Similarity=0.114  Sum_probs=68.9

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHc----CCcEEEcCCCCCCccHHHHHHhhc
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      ......++.+||-+|+| .|..+..+++..+ ..+|++++.+++..+.+++.    |...-+....   .+..+.+.++.
T Consensus        54 ~l~~~~~~~~VLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~~~~~~  129 (239)
T 2hnk_A           54 ILTKISGAKRIIEIGTF-TGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKL---GSALETLQVLI  129 (239)
T ss_dssp             HHHHHHTCSEEEEECCT-TCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHH
T ss_pred             HHHHhhCcCEEEEEeCC-CCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEE---CCHHHHHHHHH
Confidence            34456678999999987 4888889998873 23999999999887777653    4421011111   22333333221


Q ss_pred             --------------C-CCccEEEEccCCH---HHHHHHHHHhhcCCceEEEE
Q 016507          270 --------------D-GGADYCFECVGLA---SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       270 --------------~-g~~dvvid~~g~~---~~~~~~~~~l~~~~G~~v~~  303 (388)
                                    . +.||+|+......   ..+..+.+.|+++ |.++..
T Consensus       130 ~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~  180 (239)
T 2hnk_A          130 DSKSAPSWASDFAFGPSSIDLFFLDADKENYPNYYPLILKLLKPG-GLLIAD  180 (239)
T ss_dssp             HCSSCCGGGTTTCCSTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             hhcccccccccccCCCCCcCEEEEeCCHHHHHHHHHHHHHHcCCC-eEEEEE
Confidence                          1 5799998776543   3468888999997 888764

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=96.61  E-value=0.0017  Score=55.56  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=71.2

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC--CcEEEEEcCCchHHHHHHHc----CCcEE-EcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRF----GVTEF-VNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g--~~~Vi~~~~~~~~~~~~~~l----ga~~v-~~~~~~~~~~~~~~i  265 (388)
                      +.....+.++++||.+|+| .|..+..+++..+  . +|++++.+++..+.+++.    +.+.+ +...+     ....+
T Consensus        69 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d-----~~~~~  141 (215)
T 2yxe_A           69 MCELLDLKPGMKVLEIGTG-CGYHAAVTAEIVGEDG-LVVSIERIPELAEKAERTLRKLGYDNVIVIVGD-----GTLGY  141 (215)
T ss_dssp             HHHHTTCCTTCEEEEECCT-TSHHHHHHHHHHCTTS-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEESC-----GGGCC
T ss_pred             HHHhhCCCCCCEEEEECCC-ccHHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECC-----cccCC
Confidence            4566678899999999987 4888889998876  5 999999999887777652    43221 11111     11111


Q ss_pred             HhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          266 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .  ..+.||+|+...+.......+.+.|+++ |+++..-.
T Consensus       142 ~--~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~lv~~~~  178 (215)
T 2yxe_A          142 E--PLAPYDRIYTTAAGPKIPEPLIRQLKDG-GKLLMPVG  178 (215)
T ss_dssp             G--GGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             C--CCCCeeEEEECCchHHHHHHHHHHcCCC-cEEEEEEC
Confidence            1  1237999998776555457888999997 99876643

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.60  E-value=0.0089  Score=52.64  Aligned_cols=74  Identities=14%  Similarity=0.025  Sum_probs=49.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH---HcCCcE-EEcCCCCCCccHHHHHHhhcC--CCccE
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK---RFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADY  275 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~---~lga~~-v~~~~~~~~~~~~~~i~~~~~--g~~dv  275 (388)
                      .++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.   ..+.+. .+|.     +++.+.+.+...  +++|+
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~d~-----~~v~~~~~~~~~~~g~iD~   75 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSE-----QEPAELIEAVTSAYGQVDV   75 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCC-----CSHHHHHHHHHHHHSCCCE
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCcEEEECH-----HHHHHHHHHHHHHhCCCCE
Confidence            36899987 9999999999888999 8999998877655443   224332 2222     233333332221  37999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      +|++.|.
T Consensus        76 lv~nAg~   82 (254)
T 1zmt_A           76 LVSNDIF   82 (254)
T ss_dssp             EEEECCC
T ss_pred             EEECCCc
Confidence            9998874

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.59  E-value=0.016  Score=51.42  Aligned_cols=102  Identities=22%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHc-----CCc-EE--EcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF-----GVT-EF--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~l-----ga~-~v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ ..+     +.. ..  .|-.+  .+.+.+.+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   82 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 899999887765432 222     111 12  23332  1223333322211


Q ss_pred             --CCccEEEEccCCHH-----------------HHHHHHHHhhc-----CCceEEEEccC
Q 016507          271 --GGADYCFECVGLAS-----------------LVQEAYACCRK-----GWGKTIVLGVD  306 (388)
Q Consensus       271 --g~~dvvid~~g~~~-----------------~~~~~~~~l~~-----~~G~~v~~g~~  306 (388)
                        +++|+++++.|...                 ....++..+..     . |+++.++..
T Consensus        83 ~~g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~-g~iv~isS~  141 (267)
T 2gdz_A           83 HFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEG-GIIINMSSL  141 (267)
T ss_dssp             HHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC-EEEEEECCG
T ss_pred             HcCCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCC-CEEEEeCCc
Confidence              37999999988420                 12334445543     4 889988764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=96.58  E-value=0.0095  Score=52.59  Aligned_cols=78  Identities=17%  Similarity=0.315  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcEE---EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+..   .|-.+  .++..+.+.+...  
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSK--KKDVEEFVRRTFETY   82 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5788999987 9999999998888999 999999998776543    33454432   23333  1222222222221  


Q ss_pred             CCccEEEEccC
Q 016507          271 GGADYCFECVG  281 (388)
Q Consensus       271 g~~dvvid~~g  281 (388)
                      |+.|+++++.|
T Consensus        83 G~iDiLVNNAG   93 (254)
T 4fn4_A           83 SRIDVLCNNAG   93 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            37999999887

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.58  E-value=0.0082  Score=52.60  Aligned_cols=79  Identities=22%  Similarity=0.264  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEE-EcCCCCCCccHHHHHHhhcC--CCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v-~~~~~~~~~~~~~~i~~~~~--g~~dv  275 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+++..+ .|-.+  .+.+.+.+.+...  |++|+
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~id~   80 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLGRLDG   80 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCEEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            4678999987 9999999998888899 8999999887765443 3454322 23333  1223333322211  37999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      +|++.|.
T Consensus        81 lvn~Ag~   87 (245)
T 1uls_A           81 VVHYAGI   87 (245)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9999883

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=96.56  E-value=0.0068  Score=53.29  Aligned_cols=103  Identities=14%  Similarity=0.078  Sum_probs=72.9

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHc-----CCcE--EEcCCCCCCccHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF-----GVTE--FVNSKNCGDKSVSQI  264 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~l-----ga~~--v~~~~~~~~~~~~~~  264 (388)
                      +.....+.++++||-+|+|. |..+..+++..+ ..+|++++.+++..+.+++.     |.+.  ++.. +     +.+.
T Consensus        88 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~-d-----~~~~  160 (258)
T 2pwy_A           88 MVTLLDLAPGMRVLEAGTGS-GGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLG-K-----LEEA  160 (258)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEES-C-----GGGC
T ss_pred             HHHHcCCCCCCEEEEECCCc-CHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEEC-c-----hhhc
Confidence            45667789999999999885 888889998853 23999999999888877653     5322  2221 1     1110


Q ss_pred             HHhhcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          265 IIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       265 i~~~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                        .+..+.||+|+...... ..+..+.+.|+++ |.++.+..
T Consensus       161 --~~~~~~~D~v~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  199 (258)
T 2pwy_A          161 --ELEEAAYDGVALDLMEPWKVLEKAALALKPD-RFLVAYLP  199 (258)
T ss_dssp             --CCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEES
T ss_pred             --CCCCCCcCEEEECCcCHHHHHHHHHHhCCCC-CEEEEEeC
Confidence              11223799998766655 5588999999997 99887753

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=96.56  E-value=0.01  Score=51.71  Aligned_cols=75  Identities=17%  Similarity=0.264  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc-CCcEE-EcCCCCCCccHHHHHHhhcC--CCcc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-GVTEF-VNSKNCGDKSVSQIIIDMTD--GGAD  274 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l-ga~~v-~~~~~~~~~~~~~~i~~~~~--g~~d  274 (388)
                      ++.+|||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. ++ +...+ .|-.+   .+   .+.+...  +++|
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~---~~---~~~~~~~~~~~id   78 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WE---ATERALGSVGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HH---HHHHHHTTCCCCC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCCCEEEEeCCC---HH---HHHHHHHHcCCCC
Confidence            4688999987 9999999998888999 8999999887765443 33 33222 23222   22   2333222  3799


Q ss_pred             EEEEccCC
Q 016507          275 YCFECVGL  282 (388)
Q Consensus       275 vvid~~g~  282 (388)
                      ++|++.|.
T Consensus        79 ~vi~~Ag~   86 (244)
T 3d3w_A           79 LLVNNAAV   86 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999873

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=96.56  E-value=0.018  Score=51.80  Aligned_cols=87  Identities=16%  Similarity=0.187  Sum_probs=61.2

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+.     ..|+||-|+..
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~-----~aDvvi~~vp~   67 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGC-SVTIWNRSPEKAEELAALGAERA--------ATPCEVVE-----SCPVTFAMLAD   67 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC--------SSHHHHHH-----HCSEEEECCSS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec--------CCHHHHHh-----cCCEEEEEcCC
Confidence            378999999999999988888898 99999999999888887775321        22333332     46888888886


Q ss_pred             HHHHHHHH-------HHhhcCCceEEEEc
Q 016507          283 ASLVQEAY-------ACCRKGWGKTIVLG  304 (388)
Q Consensus       283 ~~~~~~~~-------~~l~~~~G~~v~~g  304 (388)
                      +..+...+       ..++++ ..++..+
T Consensus        68 ~~~~~~v~~~~~~l~~~l~~~-~~vi~~s   95 (287)
T 3pef_A           68 PAAAEEVCFGKHGVLEGIGEG-RGYVDMS   95 (287)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred             HHHHHHHHcCcchHhhcCCCC-CEEEeCC
Confidence            54354444       445554 4455443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.56  E-value=0.0097  Score=53.43  Aligned_cols=73  Identities=19%  Similarity=0.215  Sum_probs=52.4

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcC-----CcE-EEcCCCCCCccHHHHHHhhcCCC
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFG-----VTE-FVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lg-----a~~-v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      -.+.++||+|+|++|.+++..+...|+++|+++.++.++.+.+ +.++     ... +++.     +++.+.+.     .
T Consensus       125 l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~-----~~l~~~l~-----~  194 (283)
T 3jyo_A          125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA-----RGIEDVIA-----A  194 (283)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS-----TTHHHHHH-----H
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH-----HHHHHHHh-----c
Confidence            4678999999999999999988889997899999998877643 3332     111 2221     23444332     6


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+||+|++.
T Consensus       195 ~DiVInaTp~  204 (283)
T 3jyo_A          195 ADGVVNATPM  204 (283)
T ss_dssp             SSEEEECSST
T ss_pred             CCEEEECCCC
Confidence            8999999874

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=96.54  E-value=0.008  Score=53.07  Aligned_cols=79  Identities=15%  Similarity=0.164  Sum_probs=52.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE-E--EcCCCCCCccHHHHHHhhc--CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~-v--~~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .++... .  .|-.+  .+.+.+.+.+..  .+++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   83 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFGPRVHALRSDIAD--LNEIAVLGAAAGQTLGAI   83 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHSSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCcceEEEccCCC--HHHHHHHHHHHHHHhCCC
Confidence            5789999987 9999999998888999 9999999888766544 344332 2  23332  122222222221  1379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        84 d~lv~nAg~   92 (255)
T 4eso_A           84 DLLHINAGV   92 (255)
T ss_dssp             EEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998874

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.52  E-value=0.013  Score=53.50  Aligned_cols=79  Identities=11%  Similarity=0.158  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCC--c-EE--EcCCCCCCccHHHHHHhhc-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV--T-EF--VNSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga--~-~v--~~~~~~~~~~~~~~i~~~~-  269 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+    .+.  . .+  .|-.+  .+.+.+.+.+.. 
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   83 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVAS--REGFKMAADEVEA   83 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCC--HHHHHHHHHHHHH
Confidence            5679999987 9999999998888899 89999999877654332    232  1 12  23333  123333333221 


Q ss_pred             -CCCccEEEEccCC
Q 016507          270 -DGGADYCFECVGL  282 (388)
Q Consensus       270 -~g~~dvvid~~g~  282 (388)
                       .+++|++|++.|.
T Consensus        84 ~~g~id~lv~nAg~   97 (319)
T 3ioy_A           84 RFGPVSILCNNAGV   97 (319)
T ss_dssp             HTCCEEEEEECCCC
T ss_pred             hCCCCCEEEECCCc
Confidence             2479999999983

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.50  E-value=0.0081  Score=52.83  Aligned_cols=79  Identities=16%  Similarity=0.229  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c-----C-C-cEE--EcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F-----G-V-TEF--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l-----g-a-~~v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+ +     + . ..+  .|-.+  .+.+.+.+.+..
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   82 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITD--CTKADTEIKDIH   82 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCC--HHHHHHHHHHHH
Confidence            4678999987 9999999988888899 99999998877654432 1     2 1 112  23333  122333332221


Q ss_pred             C--CCccEEEEccCC
Q 016507          270 D--GGADYCFECVGL  282 (388)
Q Consensus       270 ~--g~~dvvid~~g~  282 (388)
                      .  +++|+++++.|.
T Consensus        83 ~~~g~iD~lvnnAg~   97 (250)
T 3nyw_A           83 QKYGAVDILVNAAAM   97 (250)
T ss_dssp             HHHCCEEEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence            1  379999999985

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=96.50  E-value=0.01  Score=52.33  Aligned_cols=79  Identities=19%  Similarity=0.225  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE-E--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .++... .  .|-.+  .+++.+.+.+...  +++
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   84 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGA-KVVIVDRDKAGAERVAGEIGDAALAVAADISK--EADVDAAVEAALSKFGKV   84 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHhcCCC
Confidence            4678999987 9999999998888899 8999999988766544 354332 2  23322  1223333332221  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        85 d~li~~Ag~   93 (261)
T 3n74_A           85 DILVNNAGI   93 (261)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999873

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.49  E-value=0.012  Score=52.00  Aligned_cols=79  Identities=23%  Similarity=0.280  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc-----CCc-EE--EcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVT-EF--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l-----ga~-~v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+     +.. .+  .|-.+  .+.+.+.+.+...
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   82 (260)
T 2z1n_A            6 QGKLAVVTAGSSGLGFASALELARNGA-RLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIRE--PGDIDRLFEKARD   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 8999999887655432 22     211 12  23333  1233333333222


Q ss_pred             C-CccEEEEccCC
Q 016507          271 G-GADYCFECVGL  282 (388)
Q Consensus       271 g-~~dvvid~~g~  282 (388)
                      . ++|++|++.|.
T Consensus        83 ~~gid~lv~~Ag~   95 (260)
T 2z1n_A           83 LGGADILVYSTGG   95 (260)
T ss_dssp             TTCCSEEEECCCC
T ss_pred             hcCCCEEEECCCC
Confidence            2 49999999883

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=96.49  E-value=0.013  Score=53.33  Aligned_cols=100  Identities=12%  Similarity=0.198  Sum_probs=71.0

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCc---EEEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~---~v~~~~~~~~~~~~~~i  265 (388)
                      +.+...+.++++||-+|.|. |..+..+++..|+ +|++++.+++..+.+++.    |..   .++..      ++    
T Consensus        82 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~------d~----  149 (318)
T 2fk8_A           82 NLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQ------GW----  149 (318)
T ss_dssp             HHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEES------CG----
T ss_pred             HHHhcCCCCcCEEEEEcccc-hHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEC------Ch----
Confidence            45566788999999999876 8888888887788 999999999988877753    321   12211      11    


Q ss_pred             HhhcCCCccEEEEc-----cCC---HHHHHHHHHHhhcCCceEEEEccC
Q 016507          266 IDMTDGGADYCFEC-----VGL---ASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       266 ~~~~~g~~dvvid~-----~g~---~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .++ .+.||+|+..     ++.   ...+..+.+.|+++ |.++.....
T Consensus       150 ~~~-~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~~  196 (318)
T 2fk8_A          150 EDF-AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQSSV  196 (318)
T ss_dssp             GGC-CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEEEE
T ss_pred             HHC-CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCC-cEEEEEEec
Confidence            111 2489999876     321   34477888999998 998876543

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.47  E-value=0.008  Score=52.64  Aligned_cols=77  Identities=18%  Similarity=0.291  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC-CcE-EEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VTE-FVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg-a~~-v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.++. +.. ..|-.+   .+..+.+.+.. +++|++|
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~-~~id~lv   79 (246)
T 2ag5_A            5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEV-ERLDVLF   79 (246)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHC-SCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhccCceEEEeeCCC---HHHHHHHHHHh-CCCCEEE
Confidence            4678999987 9999999998888899 9999999887765444332 211 123333   22222332222 4799999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      ++.|.
T Consensus        80 ~~Ag~   84 (246)
T 2ag5_A           80 NVAGF   84 (246)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            99873

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.47  E-value=0.017  Score=54.90  Aligned_cols=96  Identities=16%  Similarity=0.200  Sum_probs=69.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      .+.+|+|.|.|.+|..+++.++..|. .|++++.++++.+.+++.|...++ |..+      .+.+++..-..+|+|+-+
T Consensus         3 ~~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~g~~vi~GDat~------~~~L~~agi~~A~~viv~   75 (413)
T 3l9w_A            3 HGMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKFGMKVFYGDATR------MDLLESAGAAKAEVLINA   75 (413)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHTTCCCEESCTTC------HHHHHHTTTTTCSEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhCCCeEEEcCCCC------HHHHHhcCCCccCEEEEC
Confidence            34679999999999999999999999 999999999999999998876544 2222      233444322389999999


Q ss_pred             cCCHHHHH---HHHHHhhcCCceEEEEc
Q 016507          280 VGLASLVQ---EAYACCRKGWGKTIVLG  304 (388)
Q Consensus       280 ~g~~~~~~---~~~~~l~~~~G~~v~~g  304 (388)
                      ++.+..-.   ...+.+.+. .+++.-.
T Consensus        76 ~~~~~~n~~i~~~ar~~~p~-~~Iiara  102 (413)
T 3l9w_A           76 IDDPQTNLQLTEMVKEHFPH-LQIIARA  102 (413)
T ss_dssp             CSSHHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             CCChHHHHHHHHHHHHhCCC-CeEEEEE
Confidence            99875332   334444454 5666554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.46  E-value=0.018  Score=51.97  Aligned_cols=86  Identities=17%  Similarity=0.175  Sum_probs=61.1

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|+..   .     .+..+.+.     +.|+||.|++.+
T Consensus         7 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~---~-----~~~~~~~~-----~~D~vi~~v~~~   72 (299)
T 1vpd_A            7 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAET---A-----STAKAIAE-----QCDVIITMLPNS   72 (299)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEE---C-----SSHHHHHH-----HCSEEEECCSSH
T ss_pred             eEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCee---c-----CCHHHHHh-----CCCEEEEECCCH
Confidence            79999999999998888888898 8999999998888777766531   1     22333332     579999999866


Q ss_pred             HHHHHHH-------HHhhcCCceEEEEc
Q 016507          284 SLVQEAY-------ACCRKGWGKTIVLG  304 (388)
Q Consensus       284 ~~~~~~~-------~~l~~~~G~~v~~g  304 (388)
                      ..+...+       ..+.++ ..++.++
T Consensus        73 ~~~~~~~~~~~~l~~~l~~~-~~vv~~s   99 (299)
T 1vpd_A           73 PHVKEVALGENGIIEGAKPG-TVLIDMS   99 (299)
T ss_dssp             HHHHHHHHSTTCHHHHCCTT-CEEEECS
T ss_pred             HHHHHHHhCcchHhhcCCCC-CEEEECC
Confidence            5455444       445564 5555554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.46  E-value=0.016  Score=49.48  Aligned_cols=97  Identities=14%  Similarity=0.100  Sum_probs=62.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +|||+|+ |.+|...++.+...|+ +|+++++++++.+.+  .++. ++.-+-   .+..+.+.+... ++|+||++.+.
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~--~~~~-~~~~D~---~d~~~~~~~~~~-~~d~vi~~ag~   73 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDY-QIYAGARKVEQVPQY--NNVK-AVHFDV---DWTPEEMAKQLH-GMDAIINVSGS   73 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSC-EEEEEESSGGGSCCC--TTEE-EEECCT---TSCHHHHHTTTT-TCSEEEECCCC
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCccchhhc--CCce-EEEecc---cCCHHHHHHHHc-CCCEEEECCcC
Confidence            6999997 9999999999988898 999999988765432  2222 222221   121334544443 79999999985


Q ss_pred             HH---------HHHHHHHHhhcC-CceEEEEccCCC
Q 016507          283 AS---------LVQEAYACCRKG-WGKTIVLGVDQP  308 (388)
Q Consensus       283 ~~---------~~~~~~~~l~~~-~G~~v~~g~~~~  308 (388)
                      ..         .....++.+... .++++.++....
T Consensus        74 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~  109 (219)
T 3dqp_A           74 GGKSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFS  109 (219)
T ss_dssp             TTSSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTT
T ss_pred             CCCCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccc
Confidence            31         133444444443 148888886543

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.46  E-value=0.013  Score=51.05  Aligned_cols=75  Identities=16%  Similarity=0.243  Sum_probs=50.6

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcC--CCccEEE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADYCF  277 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~--g~~dvvi  277 (388)
                      +.++||+|+ |.+|.+.++.+...|+ +|+++++++++  ..+.+++..+ .|-.+   ++..+.+.+...  +++|+++
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~D~~~---~~~~~~~~~~~~~~g~id~lv   75 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGY-RVAIASRNPEE--AAQSLGAVPLPTDLEK---DDPKGLVKRALEALGGLHVLV   75 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHH--HHHHHTCEEEECCTTT---SCHHHHHHHHHHHHTSCCEEE
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHH--HHHhhCcEEEecCCch---HHHHHHHHHHHHHcCCCCEEE
Confidence            468999987 9999999998888999 89999988776  3344553222 23222   333333332221  3799999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      ++.|.
T Consensus        76 ~~Ag~   80 (239)
T 2ekp_A           76 HAAAV   80 (239)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99873

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=96.45  E-value=0.0091  Score=53.36  Aligned_cols=79  Identities=23%  Similarity=0.353  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCC--c-EE--EcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--T-EF--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga--~-~v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+.+.    ..+.  . .+  .|-.+  .+.+.+.+.+...
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  107 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS  107 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 8999999877655432    2232  1 12  23333  1223333322211


Q ss_pred             --CCccEEEEccCC
Q 016507          271 --GGADYCFECVGL  282 (388)
Q Consensus       271 --g~~dvvid~~g~  282 (388)
                        +++|++|++.|.
T Consensus       108 ~~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          108 QHSGVDICINNAGL  121 (279)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hCCCCCEEEECCCC
Confidence              379999999873

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=96.45  E-value=0.017  Score=50.05  Aligned_cols=78  Identities=23%  Similarity=0.220  Sum_probs=50.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-----HcCCcEE---EcCCCCCCccHHHHHHhhc--C
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-----RFGVTEF---VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-----~lga~~v---~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      +.++||+|+ |.+|.+.++.+...|+ +|++++++.++.+.+.     ..+....   .|-.+  .+++.+.+.+..  .
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~   78 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSK--AESVEEFSKKVLERF   78 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHCC-HHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCC--HHHHHHHHHHHHHhc
Confidence            578999987 9999999999988999 8999999887655432     2343322   23332  122222211111  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        79 g~id~li~~Ag~   90 (235)
T 3l77_A           79 GDVDVVVANAGL   90 (235)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            379999999874

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=96.44  E-value=0.012  Score=52.73  Aligned_cols=79  Identities=23%  Similarity=0.260  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEE---EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF---VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v---~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .++....   .|-.+  .+.+.+.+.+...  |++
T Consensus        26 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           26 NQRVCIVTGGGSGIGRATAELFAKNGA-YVVVADVNEDAAVRVANEIGSKAFGVRVDVSS--AKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceEEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4788999987 9999999998888999 9999999887765443 3454322   23333  1223222322211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus       103 D~lv~nAg~  111 (277)
T 4dqx_A          103 DVLVNNAGF  111 (277)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999883

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=96.43  E-value=0.012  Score=51.94  Aligned_cols=79  Identities=24%  Similarity=0.287  Sum_probs=53.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE-E--EcCCCCCCccHHHHHHhhc--CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~-v--~~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++.++.+.+ ..++... .  .|-.+  .+++.+.+.+..  .|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   83 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIGPAAYAVQMDVTR--QDSIDAAIAATVEHAGGL   83 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCCceEEEeeCCC--HHHHHHHHHHHHHHcCCC
Confidence            5789999987 9999999998888899 899999988776543 3444332 2  23333  122333333221  2379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        84 d~lv~~Ag~   92 (259)
T 4e6p_A           84 DILVNNAAL   92 (259)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999884

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.43  E-value=0.014  Score=51.24  Aligned_cols=79  Identities=23%  Similarity=0.225  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-hHHH-HHHHcCCcE-E--EcCCCCCCccHHHHHHhhc--CCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE-IGKRFGVTE-F--VNSKNCGDKSVSQIIIDMT--DGG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~-~~~~lga~~-v--~~~~~~~~~~~~~~i~~~~--~g~  272 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++ ++.+ .++..+... .  .|-.+  .+.+.+.+.+..  .++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~   82 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ--PGDVEAFGKQVISTFGR   82 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCchhHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHHHHHcCC
Confidence            4678999987 9999999998888899 899998887 5544 344455332 2  23333  122333322221  137


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|++|++.|.
T Consensus        83 id~lv~nAg~   92 (249)
T 2ew8_A           83 CDILVNNAGI   92 (249)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999873

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=96.43  E-value=0.011  Score=52.64  Aligned_cols=79  Identities=19%  Similarity=0.265  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEE--cCCCCCCccHHHHHHhhcC--CCcc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFV--NSKNCGDKSVSQIIIDMTD--GGAD  274 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~--~~~~~~~~~~~~~i~~~~~--g~~d  274 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ +.....+  |-.+  .+.+.+.+.+...  +++|
T Consensus         8 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD   84 (270)
T 1yde_A            8 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ--EDDVKTLVSETIRRFGRLD   84 (270)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCeEEEcCCCC--HHHHHHHHHHHHHHcCCCC
Confidence            5688999987 9999999998888999 89999998877654433 3221222  3332  1223332322211  3799


Q ss_pred             EEEEccCC
Q 016507          275 YCFECVGL  282 (388)
Q Consensus       275 vvid~~g~  282 (388)
                      ++|++.|.
T Consensus        85 ~lv~nAg~   92 (270)
T 1yde_A           85 CVVNNAGH   92 (270)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998873

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=96.43  E-value=0.033  Score=51.72  Aligned_cols=113  Identities=15%  Similarity=0.160  Sum_probs=74.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC----chH---------HHHHHHcCCcEEEcCCCCCCccHHHHHH
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI----SEK---------FEIGKRFGVTEFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~----~~~---------~~~~~~lga~~v~~~~~~~~~~~~~~i~  266 (388)
                      -++.+|+|+|+|.+|..+++++..+|+++|++++++    .+|         .+++++...    ....   .++.+.++
T Consensus       190 l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~----~~~~---~~L~eav~  262 (388)
T 1vl6_A          190 IEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP----ERLS---GDLETALE  262 (388)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT----TCCC---SCHHHHHT
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhc----cCch---hhHHHHHc
Confidence            467899999999999999999999999899999987    544         333333221    0111   45666654


Q ss_pred             hhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          267 DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       267 ~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                           ++|++|-+++.....++.++.|+++ ..++.+++..    ....+......+..+..+
T Consensus       263 -----~ADVlIG~Sap~l~t~emVk~Ma~~-pIIfalSNPt----~E~~p~~a~~~g~~i~at  315 (388)
T 1vl6_A          263 -----GADFFIGVSRGNILKPEWIKKMSRK-PVIFALANPV----PEIDPELAREAGAFIVAT  315 (388)
T ss_dssp             -----TCSEEEECSCSSCSCHHHHTTSCSS-CEEEECCSSS----CSSCHHHHHHTTCSEEEE
T ss_pred             -----cCCEEEEeCCCCccCHHHHHhcCCC-CEEEEcCCCC----CCCCHHHHHHhcCeEEEe
Confidence                 5799999988433246777888876 6666665532    245555554444444444

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=96.40  E-value=0.017  Score=52.57  Aligned_cols=88  Identities=24%  Similarity=0.246  Sum_probs=65.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++ +.+..+|+..+         ++.+.+.     ..|+|+-++
T Consensus       141 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~~---------~l~ell~-----~aDvV~l~~  204 (307)
T 1wwk_A          141 EGKTIGIIGFGRIGYQVAKIANALGM-NILLYDPYPNE-ERAKEVNGKFV---------DLETLLK-----ESDVVTIHV  204 (307)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHTTCEEC---------CHHHHHH-----HCSEEEECC
T ss_pred             CCceEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCCh-hhHhhcCcccc---------CHHHHHh-----hCCEEEEec
Confidence            57899999999999999999999999 99999998876 55667776421         1333222     579999888


Q ss_pred             CCHHH----H-HHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL----V-QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~----~-~~~~~~l~~~~G~~v~~g~  305 (388)
                      +....    + ...+..++++ +.++.++.
T Consensus       205 p~~~~t~~li~~~~l~~mk~g-a~lin~ar  233 (307)
T 1wwk_A          205 PLVESTYHLINEERLKLMKKT-AILINTSR  233 (307)
T ss_dssp             CCSTTTTTCBCHHHHHHSCTT-CEEEECSC
T ss_pred             CCChHHhhhcCHHHHhcCCCC-eEEEECCC
Confidence            74321    2 3567888887 88888875

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=96.40  E-value=0.011  Score=51.35  Aligned_cols=78  Identities=13%  Similarity=0.237  Sum_probs=51.8

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcE---EEcCCCCCCccHHHHHHhhc--CCCcc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE---FVNSKNCGDKSVSQIIIDMT--DGGAD  274 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~---v~~~~~~~~~~~~~~i~~~~--~g~~d  274 (388)
                      +.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+ ++...   ..|-.+  .+++.+.+.+..  .+++|
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~id   79 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGH-QVSMMGRRYQRLQQQELLLGNAVIGIVADLAH--HEDVDVAFAAAVEWGGLPE   79 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTS--HHHHHHHHHHHHHHHCSCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCceEEECCCCC--HHHHHHHHHHHHHhcCCCc
Confidence            578999987 9999999998888899 89999999887665433 33221   123332  122332222221  13799


Q ss_pred             EEEEccCC
Q 016507          275 YCFECVGL  282 (388)
Q Consensus       275 vvid~~g~  282 (388)
                      +++++.|.
T Consensus        80 ~lvnnAg~   87 (235)
T 3l6e_A           80 LVLHCAGT   87 (235)
T ss_dssp             EEEEECCC
T ss_pred             EEEECCCC
Confidence            99999884

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=96.40  E-value=0.012  Score=51.76  Aligned_cols=79  Identities=23%  Similarity=0.382  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE-E--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ +.++... .  .|-.+  .+.+.+.+.+...  +++
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g~i   80 (254)
T 1hdc_A            4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999998888999 899999988766543 3344322 2  23332  1233333332221  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        81 D~lv~nAg~   89 (254)
T 1hdc_A           81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=96.39  E-value=0.014  Score=49.01  Aligned_cols=100  Identities=20%  Similarity=0.218  Sum_probs=67.6

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHc----CC-c--EEEcCCCCCCccHHHHHHh
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GV-T--EFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~l----ga-~--~v~~~~~~~~~~~~~~i~~  267 (388)
                      ...++++++||-+|.|. |..+..+++..+ ..+|++++.+++..+.+++.    |. +  .++..+-   .+    +..
T Consensus        17 ~~~~~~~~~vLDlGcG~-G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~----~~~   88 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGN-GNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGH---QN----MDK   88 (197)
T ss_dssp             HHHCCTTCEEEESCCTT-SHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCG---GG----GGG
T ss_pred             HhcCCCCCEEEEcCCCC-CHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCH---HH----Hhh
Confidence            44678899999998876 788888888764 22999999999887777653    33 1  2222211   11    112


Q ss_pred             hcCCCccEEEEccCC---------------HHHHHHHHHHhhcCCceEEEEc
Q 016507          268 MTDGGADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       268 ~~~g~~dvvid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ...+.||+|+...+-               ...+..+.+.|+++ |.++...
T Consensus        89 ~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g-G~l~~~~  139 (197)
T 3eey_A           89 YIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG-GIITVVI  139 (197)
T ss_dssp             TCCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCC-CEEEEEE
Confidence            233489999865532               23588999999997 9988764

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=96.38  E-value=0.0069  Score=56.10  Aligned_cols=91  Identities=18%  Similarity=0.188  Sum_probs=66.4

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+.+..+|+..+        .++.+.+.     ..|+|+-+
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvV~l~  227 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGC-NLLYHDRLQMAPELEKETGAKFV--------EDLNEMLP-----KCDVIVIN  227 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-EEEEECSSCCCHHHHHHHCCEEC--------SCHHHHGG-----GCSEEEEC
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCC-EEEEeCCCccCHHHHHhCCCeEc--------CCHHHHHh-----cCCEEEEC
Confidence            357899999999999999999999999 89999988766777777776432        12333322     57888887


Q ss_pred             cCCH-----HHHHHHHHHhhcCCceEEEEcc
Q 016507          280 VGLA-----SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       280 ~g~~-----~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ++..     ..-...+..|+++ ..++.++.
T Consensus       228 ~Plt~~t~~li~~~~l~~mk~g-ailIN~aR  257 (351)
T 3jtm_A          228 MPLTEKTRGMFNKELIGKLKKG-VLIVNNAR  257 (351)
T ss_dssp             SCCCTTTTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             CCCCHHHHHhhcHHHHhcCCCC-CEEEECcC
Confidence            7742     1024667778886 77777764

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=96.37  E-value=0.0054  Score=53.92  Aligned_cols=104  Identities=13%  Similarity=0.116  Sum_probs=68.3

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHc----CCcEEEcCCCCCCccHHHHHHhhcC
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .....++.+||-+|.|. |..++.+++.++ ..+|++++.+++..+.+++.    |...-+....   .+..+.+.....
T Consensus        58 l~~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~---~d~~~~l~~~~~  133 (248)
T 3tfw_A           58 LVRLTQAKRILEIGTLG-GYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLRE---GPALQSLESLGE  133 (248)
T ss_dssp             HHHHHTCSEEEEECCTT-SHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHTCCS
T ss_pred             HHhhcCCCEEEEecCCc-hHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHhcCC
Confidence            33566789999999865 788888888763 33999999999888777653    5431011111   334444444433


Q ss_pred             C-CccEEEEccCC---HHHHHHHHHHhhcCCceEEEEc
Q 016507          271 G-GADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       271 g-~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      . .||+|+-....   ...+..+.+.|+++ |.++.-.
T Consensus       134 ~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~~~  170 (248)
T 3tfw_A          134 CPAFDLIFIDADKPNNPHYLRWALRYSRPG-TLIIGDN  170 (248)
T ss_dssp             CCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEEC
T ss_pred             CCCeEEEEECCchHHHHHHHHHHHHhcCCC-eEEEEeC
Confidence            3 89999843322   23478889999997 9887654

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=96.37  E-value=0.011  Score=51.10  Aligned_cols=75  Identities=12%  Similarity=0.073  Sum_probs=51.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcE---EEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTE---FVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~---v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      ++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+ ++...   ..|-.+   .+..+.+.+.....+|++++
T Consensus         3 ~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~---~~~v~~~~~~~~~~~d~lv~   78 (230)
T 3guy_A            3 LIVITGASSGLGAELAKLYDAEGK-ATYLTGRSESKLSTVTNCLSNNVGYRARDLAS---HQEVEQLFEQLDSIPSTVVH   78 (230)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHTCSSCCCEEECCTTC---HHHHHHHHHSCSSCCSEEEE
T ss_pred             EEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhccCeEeecCCC---HHHHHHHHHHHhhcCCEEEE
Confidence            6899987 9999999998888999 89999999887765543 43221   233333   33333333333335699999


Q ss_pred             ccCC
Q 016507          279 CVGL  282 (388)
Q Consensus       279 ~~g~  282 (388)
                      +.|.
T Consensus        79 ~Ag~   82 (230)
T 3guy_A           79 SAGS   82 (230)
T ss_dssp             CCCC
T ss_pred             eCCc
Confidence            9873

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.37  E-value=0.0079  Score=52.29  Aligned_cols=96  Identities=13%  Similarity=0.035  Sum_probs=62.2

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      .+|||+|+ |.+|..+++.+...| + +|+++++++++.+.+...++..+ .|-.+   .   +.+.+... ++|+||.+
T Consensus        24 k~vlVtGatG~iG~~l~~~L~~~G~~-~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d---~---~~~~~~~~-~~D~vv~~   95 (236)
T 3qvo_A           24 KNVLILGAGGQIARHVINQLADKQTI-KQTLFARQPAKIHKPYPTNSQIIMGDVLN---H---AALKQAMQ-GQDIVYAN   95 (236)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTTE-EEEEEESSGGGSCSSCCTTEEEEECCTTC---H---HHHHHHHT-TCSEEEEE
T ss_pred             cEEEEEeCCcHHHHHHHHHHHhCCCc-eEEEEEcChhhhcccccCCcEEEEecCCC---H---HHHHHHhc-CCCEEEEc
Confidence            57999997 999999999998888 7 99999998876543332233222 23222   2   23333322 78999999


Q ss_pred             cCCHH---HHHHHHHHhhcC-CceEEEEccC
Q 016507          280 VGLAS---LVQEAYACCRKG-WGKTIVLGVD  306 (388)
Q Consensus       280 ~g~~~---~~~~~~~~l~~~-~G~~v~~g~~  306 (388)
                      .+...   ..+.+++.+... .+++|.++..
T Consensus        96 a~~~~~~~~~~~~~~~~~~~~~~~iV~iSS~  126 (236)
T 3qvo_A           96 LTGEDLDIQANSVIAAMKACDVKRLIFVLSL  126 (236)
T ss_dssp             CCSTTHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCCCchhHHHHHHHHHHHHcCCCEEEEEecc
Confidence            88643   134455555442 2578888763

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=96.36  E-value=0.022  Score=52.04  Aligned_cols=88  Identities=17%  Similarity=0.212  Sum_probs=61.6

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      ..+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+.     ..|+||-|+.
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~--------~~~~e~~~-----~aDvVi~~vp   96 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEAGY-ALQVWNRTPARAASLAALGATIH--------EQARAAAR-----DADIVVSMLE   96 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCEEE--------SSHHHHHT-----TCSEEEECCS
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCC-eEEEEcCCHHHHHHHHHCCCEee--------CCHHHHHh-----cCCEEEEECC
Confidence            3589999999999999998888898 89999999999888877775422        12333221     5788888888


Q ss_pred             CHHHHHHHH------HHhhcCCceEEEEc
Q 016507          282 LASLVQEAY------ACCRKGWGKTIVLG  304 (388)
Q Consensus       282 ~~~~~~~~~------~~l~~~~G~~v~~g  304 (388)
                      .+..+...+      ..+.++ ..++..+
T Consensus        97 ~~~~~~~v~~~~~~~~~l~~~-~~vi~~s  124 (320)
T 4dll_A           97 NGAVVQDVLFAQGVAAAMKPG-SLFLDMA  124 (320)
T ss_dssp             SHHHHHHHHTTTCHHHHCCTT-CEEEECS
T ss_pred             CHHHHHHHHcchhHHhhCCCC-CEEEecC
Confidence            764444443      244554 4555554

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=96.36  E-value=0.025  Score=48.73  Aligned_cols=101  Identities=17%  Similarity=0.165  Sum_probs=65.6

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHH----cCCc--EEEcCCCCCCccHHHHHH
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~----lga~--~v~~~~~~~~~~~~~~i~  266 (388)
                      ...+.+++.+||-+|.|. |..++.+++.+  +. +|++++.+++..+.+++    .|..  .+ ....   .+..+.+.
T Consensus        50 ~~~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~g~~~~~i-~~~~---gda~~~l~  123 (221)
T 3dr5_A           50 ATTNGNGSTGAIAITPAA-GLVGLYILNGLADNT-TLTCIDPESEHQRQAKALFREAGYSPSRV-RFLL---SRPLDVMS  123 (221)
T ss_dssp             HHSCCTTCCEEEEESTTH-HHHHHHHHHHSCTTS-EEEEECSCHHHHHHHHHHHHHTTCCGGGE-EEEC---SCHHHHGG
T ss_pred             HhhCCCCCCCEEEEcCCc-hHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCcCcE-EEEE---cCHHHHHH
Confidence            333444556999888765 88888888876  45 99999999988777764    3443  22 1111   23334333


Q ss_pred             hhcCCCccEEEEccCCH---HHHHHHHHHhhcCCceEEE
Q 016507          267 DMTDGGADYCFECVGLA---SLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       267 ~~~~g~~dvvid~~g~~---~~~~~~~~~l~~~~G~~v~  302 (388)
                      .+..+.||+||--....   ..++.+.+.|+++ |.++.
T Consensus       124 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~  161 (221)
T 3dr5_A          124 RLANDSYQLVFGQVSPMDLKALVDAAWPLLRRG-GALVL  161 (221)
T ss_dssp             GSCTTCEEEEEECCCTTTHHHHHHHHHHHEEEE-EEEEE
T ss_pred             HhcCCCcCeEEEcCcHHHHHHHHHHHHHHcCCC-cEEEE
Confidence            33245899997544322   3478889999997 87775

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=96.36  E-value=0.022  Score=51.82  Aligned_cols=74  Identities=16%  Similarity=0.161  Sum_probs=54.7

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+.     ..|+||-|++.
T Consensus        22 ~~I~iIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~--------~~~~~~~~-----~aDvvi~~vp~   87 (310)
T 3doj_A           22 MEVGFLGLGIMGKAMSMNLLKNGF-KVTVWNRTLSKCDELVEHGASVC--------ESPAEVIK-----KCKYTIAMLSD   87 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSGGGGHHHHHTTCEEC--------SSHHHHHH-----HCSEEEECCSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCeEc--------CCHHHHHH-----hCCEEEEEcCC
Confidence            589999999999999998888898 99999999999888887776421        22333332     46788888776


Q ss_pred             HHHHHHHH
Q 016507          283 ASLVQEAY  290 (388)
Q Consensus       283 ~~~~~~~~  290 (388)
                      +..+...+
T Consensus        88 ~~~~~~v~   95 (310)
T 3doj_A           88 PCAALSVV   95 (310)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444444

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.35  E-value=0.038  Score=49.15  Aligned_cols=102  Identities=24%  Similarity=0.361  Sum_probs=62.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-hHHHH----HHHcCCcEE---EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEI----GKRFGVTEF---VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~~----~~~lga~~v---~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++.. ++.+.    ++..+....   .|-.+  .+++.+.+.+... 
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  106 (271)
T 3v2g_A           30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRD--AEAIEQAIRETVEA  106 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 9999999998888999 888875443 43332    223344322   23322  1223333332221 


Q ss_pred             -CCccEEEEccCCH-------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          271 -GGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       271 -g~~dvvid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       |++|+++++.|..                         ...+.++..+..+ |+++.++..
T Consensus       107 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS~  167 (271)
T 3v2g_A          107 LGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGSN  167 (271)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCG
T ss_pred             cCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeCh
Confidence             3799999998741                         1133445556666 999998753

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=96.34  E-value=0.017  Score=50.29  Aligned_cols=74  Identities=15%  Similarity=0.223  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c-CCcEE-EcCCCCCCccHHHHHHhhcC--CCcc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F-GVTEF-VNSKNCGDKSVSQIIIDMTD--GGAD  274 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l-ga~~v-~~~~~~~~~~~~~~i~~~~~--g~~d  274 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+ + +...+ .|-.+   .   +.+.+...  +++|
T Consensus         6 ~~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~~~~~id   78 (244)
T 1cyd_A            6 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---W---DATEKALGGIGPVD   78 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---H---HHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCCcEEecCCC---H---HHHHHHHHHcCCCC
Confidence            4678999987 9999999998888999 89999998876654433 2 33222 23222   2   22333322  3689


Q ss_pred             EEEEccC
Q 016507          275 YCFECVG  281 (388)
Q Consensus       275 vvid~~g  281 (388)
                      ++|++.|
T Consensus        79 ~vi~~Ag   85 (244)
T 1cyd_A           79 LLVNNAA   85 (244)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            9999988

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.34  E-value=0.0069  Score=52.98  Aligned_cols=103  Identities=15%  Similarity=0.191  Sum_probs=67.2

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc-EEEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      +-.|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+....-.+. ...|-.+  .+.+.+.+.++  |+.|++
T Consensus         8 lf~GK~alVTGas~GIG~aia~~la~~Ga-~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~--g~iDiL   82 (242)
T 4b79_A            8 IYAGQQVLVTGGSSGIGAAIAMQFAELGA-EVVALGLDADGVHAPRHPRIRREELDITD--SQRLQRLFEAL--PRLDVL   82 (242)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTSTTSCCCTTEEEEECCTTC--HHHHHHHHHHC--SCCSEE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHhhhhcCCeEEEEecCCC--HHHHHHHHHhc--CCCCEE
Confidence            346899999987 9999999999999999 999999988765433221111 1233333  12333333332  489999


Q ss_pred             EEccCCH-----------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          277 FECVGLA-----------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       277 id~~g~~-----------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +++.|..                       ...+.++..++.++|+||.++..
T Consensus        83 VNNAGi~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~  135 (242)
T 4b79_A           83 VNNAGISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGGSILNIASM  135 (242)
T ss_dssp             EECCCCCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCEEEEEECCG
T ss_pred             EECCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence            9998742                       11234555564423999999864

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=96.34  E-value=0.0044  Score=56.15  Aligned_cols=100  Identities=16%  Similarity=0.259  Sum_probs=72.1

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCc---EEEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~---~v~~~~~~~~~~~~~~i  265 (388)
                      +.....++++++||-+|.|. |..+..+++..|+ +|++++.+++..+.+++.    |..   .++. .     ++    
T Consensus        64 ~~~~~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~-~-----d~----  131 (302)
T 3hem_A           64 ALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI-Q-----GW----  131 (302)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEE-C-----CG----
T ss_pred             HHHHcCCCCcCEEEEeeccC-cHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEE-C-----CH----
Confidence            45667789999999999876 8888899998887 999999999888777653    332   1222 1     12    


Q ss_pred             HhhcCCCccEEEEccCC---------------HHHHHHHHHHhhcCCceEEEEccC
Q 016507          266 IDMTDGGADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .++ .+.||+|+.....               ...+..+.+.|+++ |.++.....
T Consensus       132 ~~~-~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~~  185 (302)
T 3hem_A          132 EEF-DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTIT  185 (302)
T ss_dssp             GGC-CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTT-CEEEEEEEE
T ss_pred             HHc-CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCC-cEEEEEEEe
Confidence            122 3589999874321               24478899999998 999877653

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=96.33  E-value=0.015  Score=51.36  Aligned_cols=79  Identities=30%  Similarity=0.425  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc----CCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l----ga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+    +... .  .|-.+  .+.+.+.+.+... 
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVAT--PEGVDAVVESVRSS   82 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 8999999887654332 22    4322 2  23333  1223333322211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        83 ~g~id~lv~~Ag~   95 (263)
T 3ai3_A           83 FGGADILVNNAGT   95 (263)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999873

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=96.33  E-value=0.015  Score=51.30  Aligned_cols=78  Identities=14%  Similarity=0.177  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-H---HcCCcE-E--EcCCCCCCccHHHHHH---hhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K---RFGVTE-F--VNSKNCGDKSVSQIII---DMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~---~lga~~-v--~~~~~~~~~~~~~~i~---~~~  269 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ .   ..+... .  .|-.+  .+.+.+.+.   +..
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHF   84 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999998888899 899999988765433 2   224322 1  23333  122222222   222


Q ss_pred             CCCccEEEEccC
Q 016507          270 DGGADYCFECVG  281 (388)
Q Consensus       270 ~g~~dvvid~~g  281 (388)
                      ++++|+++++.|
T Consensus        85 ~g~id~lv~~Ag   96 (260)
T 2ae2_A           85 HGKLNILVNNAG   96 (260)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCCCEEEECCC
Confidence            258999999987

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=96.32  E-value=0.012  Score=51.88  Aligned_cols=104  Identities=21%  Similarity=0.270  Sum_probs=67.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcEEE---cCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEFV---NSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~v~---~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|.+...   |-.+  .++..+.+.+...  
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTD--ELAIEAAFSKLDAEG   84 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC--HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHC
Confidence            5788899987 9999999999999999 999999988765432    334544332   2222  1233333333322  


Q ss_pred             CCccEEEEccCCH-------------------------HHHHHHHHHhh--cCCceEEEEccCC
Q 016507          271 GGADYCFECVGLA-------------------------SLVQEAYACCR--KGWGKTIVLGVDQ  307 (388)
Q Consensus       271 g~~dvvid~~g~~-------------------------~~~~~~~~~l~--~~~G~~v~~g~~~  307 (388)
                      |+.|+++++.|..                         ...+.++..+.  .++|+|+.++...
T Consensus        85 G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~  148 (255)
T 4g81_D           85 IHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLT  148 (255)
T ss_dssp             CCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred             CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehh
Confidence            3799999998742                         12344555552  2238999998643

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=96.32  E-value=0.014  Score=52.09  Aligned_cols=79  Identities=23%  Similarity=0.273  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCc-EE--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~-~v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+.. ..  .|-.+  .+.+.+.+.+...  
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQ--PDQVRGMLDQMTGEL  107 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            5789999987 9999999998888899 8999999887655433    22322 12  23333  1223333332211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|+++++.|.
T Consensus       108 g~iD~lvnnAg~  119 (276)
T 3r1i_A          108 GGIDIAVCNAGI  119 (276)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.32  E-value=0.014  Score=51.35  Aligned_cols=77  Identities=18%  Similarity=0.132  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE-E--EcCCCCCCccH---HHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-F--VNSKNCGDKSV---SQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~-v--~~~~~~~~~~~---~~~i~~~~  269 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+    .+... .  .|-.+  .+.+   .+.+.+. 
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~-   81 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARN--EDEVTAFLNAADAH-   81 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCC--HHHHHHHHHHHHhh-
Confidence            4678999987 9999999998888899 89999998877654332    24322 2  23332  1222   2223232 


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                       +++|+++++.|.
T Consensus        82 -g~id~lv~nAg~   93 (252)
T 3h7a_A           82 -APLEVTIFNVGA   93 (252)
T ss_dssp             -SCEEEEEECCCC
T ss_pred             -CCceEEEECCCc
Confidence             589999999884

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.31  E-value=0.013  Score=51.41  Aligned_cols=79  Identities=25%  Similarity=0.298  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+    .+... .  .|-.+  .+++.+.+.+...  
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   84 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSD--PESAKAMADRTLAEF   84 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4789999987 9999999998888999 89999998877654432    23322 2  23322  1222222222211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        85 g~id~li~~Ag~   96 (253)
T 3qiv_A           85 GGIDYLVNNAAI   96 (253)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            379999999875

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=96.31  E-value=0.013  Score=52.45  Aligned_cols=79  Identities=18%  Similarity=0.203  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEE---EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF---VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v---~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. .++....   .|-.+  .+++.+.+.+...  +++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   80 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGA-RVAVLDKSAERLRELEVAHGGNAVGVVGDVRS--LQDQKRAAERCLAAFGKI   80 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTBTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCC--HHHHHHHHHHHHHhcCCC
Confidence            4678999987 9999999998888999 9999999888766544 3443322   23332  1222322322211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        81 D~lvnnAg~   89 (281)
T 3zv4_A           81 DTLIPNAGI   89 (281)
T ss_dssp             CEEECCCCC
T ss_pred             CEEEECCCc
Confidence            999999874

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.31  E-value=0.0099  Score=52.46  Aligned_cols=78  Identities=21%  Similarity=0.257  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c---CCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F---GVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l---ga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ +   +... .  .|-.+  .+++.+.+.+...  
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   81 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRN--TDDIQKMIEQIDEKF   81 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999998888999 89999998877665432 2   3221 2  23333  1223333322221  


Q ss_pred             CCccEEEEccC
Q 016507          271 GGADYCFECVG  281 (388)
Q Consensus       271 g~~dvvid~~g  281 (388)
                      |++|+++++.|
T Consensus        82 g~id~lv~nAg   92 (257)
T 3imf_A           82 GRIDILINNAA   92 (257)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37999999988

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.31  E-value=0.014  Score=51.82  Aligned_cols=79  Identities=18%  Similarity=0.244  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE-E--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+. .++... .  .|-.+  .+++.+.+.+...  +++
T Consensus         5 ~~k~vlITGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   81 (263)
T 2a4k_A            5 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD--PKAVEAVFAEALEEFGRL   81 (263)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999998888899 9999999887765443 343221 2  23333  1223332322211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        82 D~lvnnAg~   90 (263)
T 2a4k_A           82 HGVAHFAGV   90 (263)
T ss_dssp             CEEEEGGGG
T ss_pred             cEEEECCCC
Confidence            999999873

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.30  E-value=0.0095  Score=52.73  Aligned_cols=80  Identities=20%  Similarity=0.248  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhc--
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      ..+.+|||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+... +  .|-.+  .+.+.+.+.+..  
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~  103 (262)
T 3rkr_A           27 LSGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSH--SDAIAAFATGVLAA  103 (262)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCC--HHHHHHHHHHHHHh
Confidence            35789999987 9999999988888899 8999999887765433    233322 2  23333  122333222221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|++|++.|.
T Consensus       104 ~g~id~lv~~Ag~  116 (262)
T 3rkr_A          104 HGRCDVLVNNAGV  116 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1379999999885

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.30  E-value=0.0096  Score=51.20  Aligned_cols=96  Identities=18%  Similarity=0.223  Sum_probs=60.8

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      .+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+. .++. ++.-+-   .+ .+.+.+... ++|+||++.+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~-~~~~-~~~~Dl---~d-~~~~~~~~~-~~d~vi~~a~   76 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGF-EVTAVVRHPEKIKIEN-EHLK-VKKADV---SS-LDEVCEVCK-GADAVISAFN   76 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTC-EEEEECSCGGGCCCCC-TTEE-EECCCT---TC-HHHHHHHHT-TCSEEEECCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCC-EEEEEEcCcccchhcc-CceE-EEEecC---CC-HHHHHHHhc-CCCEEEEeCc
Confidence            57999997 9999999999998898 9999999877653321 1222 222111   11 223333332 6999999988


Q ss_pred             CH-----------HHHHHHHHHhhcC-CceEEEEccC
Q 016507          282 LA-----------SLVQEAYACCRKG-WGKTIVLGVD  306 (388)
Q Consensus       282 ~~-----------~~~~~~~~~l~~~-~G~~v~~g~~  306 (388)
                      ..           .....+++.+... -.+++.++..
T Consensus        77 ~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~  113 (227)
T 3dhn_A           77 PGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA  113 (227)
T ss_dssp             C------CCSHHHHHHHHHHHHHHHTTCSEEEEECCS
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCCh
Confidence            64           2234555555553 1378887753

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.30  E-value=0.016  Score=51.48  Aligned_cols=79  Identities=18%  Similarity=0.330  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-H----HcCCcE-E--EcCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ +    ..+... .  .|-.+  .+.+.+.+.+..  
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKEK   96 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 899999987765433 2    224332 2  23333  122333232221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|++|++.|.
T Consensus        97 ~g~iD~lvnnAg~  109 (267)
T 1vl8_A           97 FGKLDTVVNAAGI  109 (267)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1379999999874

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.29  E-value=0.012  Score=51.87  Aligned_cols=82  Identities=18%  Similarity=0.195  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c----C--CcE-EEcCCCCCCccHHHHHHhhc-
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----G--VTE-FVNSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l----g--a~~-v~~~~~~~~~~~~~~i~~~~-  269 (388)
                      -.+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ +    +  +.. ..|-...+.+...+.+.+.. 
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            35789999987 9999999998888999 89999998877654332 1    1  111 22321111122333222221 


Q ss_pred             -CCCccEEEEccCC
Q 016507          270 -DGGADYCFECVGL  282 (388)
Q Consensus       270 -~g~~dvvid~~g~  282 (388)
                       .+++|+++++.|.
T Consensus        89 ~~g~id~lv~nAg~  102 (252)
T 3f1l_A           89 NYPRLDGVLHNAGL  102 (252)
T ss_dssp             HCSCCSEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence             2379999999874

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.29  E-value=0.016  Score=51.35  Aligned_cols=78  Identities=27%  Similarity=0.312  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc-----CCcE-E--EcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVTE-F--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l-----ga~~-v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+     +... .  .|-.+  .+.+.+.+.+...
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   88 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   88 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            4688999987 9999999998888899 8999999887655432 22     3322 2  23333  1223333332211


Q ss_pred             --CCccEEEEccC
Q 016507          271 --GGADYCFECVG  281 (388)
Q Consensus       271 --g~~dvvid~~g  281 (388)
                        |++|++|++.|
T Consensus        89 ~~g~id~lv~nAg  101 (267)
T 1iy8_A           89 RFGRIDGFFNNAG  101 (267)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HcCCCCEEEECCC
Confidence              37999999987

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=96.29  E-value=0.012  Score=52.43  Aligned_cols=79  Identities=24%  Similarity=0.271  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE---EEcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE---FVNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~---v~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ ..++...   ..|-.+  .+.+.+.+.+...  |++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   86 (271)
T 3tzq_B           10 ENKVAIITGACGGIGLETSRVLARAGA-RVVLADLPETDLAGAAASVGRGAVHHVVDLTN--EVSVRALIDFTIDTFGRL   86 (271)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSCHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHhCCCeEEEECCCCC--HHHHHHHHHHHHHHcCCC
Confidence            4789999987 9999999998888999 899999988766543 3454322   223333  1223322222211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        87 d~lv~nAg~   95 (271)
T 3tzq_B           87 DIVDNNAAH   95 (271)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999998874

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=96.29  E-value=0.016  Score=51.52  Aligned_cols=79  Identities=18%  Similarity=0.249  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE---EEcCCCCCCccHHHHHH---hhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE---FVNSKNCGDKSVSQIII---DMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~---v~~~~~~~~~~~~~~i~---~~~  269 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+...   ..|-.+  .+.+.+.+.   +..
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   96 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS--RTERDKLMQTVAHVF   96 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4688999987 9999999998888999 8999999887654332    224322   123332  122222222   222


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|+++++.|.
T Consensus        97 ~g~id~lv~nAg~  109 (273)
T 1ae1_A           97 DGKLNILVNNAGV  109 (273)
T ss_dssp             TSCCCEEEECCCC
T ss_pred             CCCCcEEEECCCC
Confidence            2589999999874

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.28  E-value=0.011  Score=52.45  Aligned_cols=79  Identities=18%  Similarity=0.218  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcC-Cc-EE--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG-VT-EF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lg-a~-~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    +.+ .. ..  .|-.+  .+.+.+.+.+... 
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   85 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSD--RAQCDALAGRAVEE   85 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999987 9999999998888999 9999999887755432    223 12 12  23332  1223222222211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|+++++.|.
T Consensus        86 ~g~id~lvnnAg~   98 (262)
T 3pk0_A           86 FGGIDVVCANAGV   98 (262)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence             379999999883

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=96.27  E-value=0.012  Score=51.69  Aligned_cols=79  Identities=27%  Similarity=0.388  Sum_probs=53.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCc---EEEcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT---EFVNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~---~v~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ ++..   ...|-.+  .+++.+.+.+...  |++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i   84 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGA-KVIGTATSESGAQAISDYLGDNGKGMALNVTN--PESIEAVLKAITDEFGGV   84 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceEEEEeCCC--HHHHHHHHHHHHHHcCCC
Confidence            5788999987 9999999998888999 89999998877655433 3322   1233333  1223333332221  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        85 D~lv~nAg~   93 (248)
T 3op4_A           85 DILVNNAGI   93 (248)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999883

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.27  E-value=0.011  Score=53.49  Aligned_cols=79  Identities=16%  Similarity=0.183  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc---C-Cc-EE--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---G-VT-EF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l---g-a~-~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+   + .. ..  .|-.+  .+.+.+.+.+... 
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  116 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSD--PGSCADAARTVVDA  116 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCC--HHHHHHHHHHHHHH
Confidence            5778999987 9999999998888999 9999999887655433 22   3 11 12  23333  1222222222211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus       117 ~g~iD~lvnnAg~  129 (293)
T 3rih_A          117 FGALDVVCANAGI  129 (293)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999873

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=96.27  E-value=0.017  Score=51.52  Aligned_cols=78  Identities=19%  Similarity=0.263  Sum_probs=50.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc---CCcE-E--EcCCCCCCccHHHHHHhhc--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF---GVTE-F--VNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l---ga~~-v--~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++...+.++.+   +... .  .|-.+   .+-.+.+.+..  .+
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~~~~g  105 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGA-HVLAWGRTDGVKEVADEIADGGGSAEAVVADLAD---LEGAANVAEELAATR  105 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTC---HHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCC---HHHHHHHHHHHHhcC
Confidence            4789999987 9999999998888999 899998766544444433   3222 1  23333   22222222211  14


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus       106 ~iD~lv~nAg~  116 (273)
T 3uf0_A          106 RVDVLVNNAGI  116 (273)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            89999999874

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.27  E-value=0.012  Score=52.18  Aligned_cols=79  Identities=23%  Similarity=0.323  Sum_probs=52.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEE---EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v---~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.    ..+....   .|-.+  .+.+.+.+.+...  
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   79 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGGTALAQVLDVTD--RHSVAAFAQAAVDTW   79 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999998888999 8999999887765433    2243221   23333  1223332322211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      |++|+++++.|.
T Consensus        80 g~iD~lVnnAG~   91 (264)
T 3tfo_A           80 GRIDVLVNNAGV   91 (264)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.26  E-value=0.018  Score=50.46  Aligned_cols=79  Identities=22%  Similarity=0.278  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+... .  .|-.+  .+.+.+.+.+...  
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~   82 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGAKVHVLELDVAD--RQGVDAAVASTVEAL   82 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999998888899 8999999887655432    224322 2  23333  1223333322211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        83 g~id~lv~nAg~   94 (247)
T 2jah_A           83 GGLDILVNNAGI   94 (247)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.26  E-value=0.015  Score=52.17  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c---CCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F---GVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l---ga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      ++.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.+ +   +... .  .|-.+  .+.+.+.+.+...  
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSD--ELQMRNAVRDLVLKF  103 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5788999987 9999999998888899 99999998877654432 2   3222 2  23332  1223333332221  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      |++|+++++.|.
T Consensus       104 g~iD~lVnnAg~  115 (283)
T 3v8b_A          104 GHLDIVVANAGI  115 (283)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998884

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=96.25  E-value=0.025  Score=51.52  Aligned_cols=77  Identities=16%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC---chHHHHH-HHc----CCc-EEEcCCCCCCccHHHHHHhhcC
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG-KRF----GVT-EFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~---~~~~~~~-~~l----ga~-~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      -.+.++||+|+|++|.+++..+...|+++|+++.++   .++.+.+ +++    +.. .+++.++  .+++.+.+.    
T Consensus       152 l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~--~~~l~~~l~----  225 (315)
T 3tnl_A          152 IIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIED--HEQLRKEIA----  225 (315)
T ss_dssp             CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC--HHHHHHHHH----
T ss_pred             ccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccch--HHHHHhhhc----
Confidence            367899999999999999999999999889999998   5554433 222    221 2343332  012222221    


Q ss_pred             CCccEEEEccCCH
Q 016507          271 GGADYCFECVGLA  283 (388)
Q Consensus       271 g~~dvvid~~g~~  283 (388)
                       .+|+||+|++..
T Consensus       226 -~aDiIINaTp~G  237 (315)
T 3tnl_A          226 -ESVIFTNATGVG  237 (315)
T ss_dssp             -TCSEEEECSSTT
T ss_pred             -CCCEEEECccCC
Confidence             689999998743

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.25  E-value=0.013  Score=52.43  Aligned_cols=78  Identities=18%  Similarity=0.200  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c---CCcEEE---cCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F---GVTEFV---NSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l---ga~~v~---~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ +   +....+   |-.+  .+.+.+.+.+...  
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGGGEAAALAGDVGD--EALHEALVELAVRRF   83 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5788999987 9999999998888899 89999998877654432 2   332222   2222  1222222222211  


Q ss_pred             CCccEEEEccC
Q 016507          271 GGADYCFECVG  281 (388)
Q Consensus       271 g~~dvvid~~g  281 (388)
                      +++|++|++.|
T Consensus        84 g~iD~lvnnAg   94 (280)
T 3tox_A           84 GGLDTAFNNAG   94 (280)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37999999987

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=96.25  E-value=0.013  Score=51.04  Aligned_cols=79  Identities=23%  Similarity=0.325  Sum_probs=51.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-----cCCcE-EE--cCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTE-FV--NSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-----lga~~-v~--~~~~~~~~~~~~~i~~~~--  269 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.+     .+... .+  |-.+  .+.+.+.+.+..  
T Consensus         6 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (248)
T 2pnf_A            6 QGKVSLVTGSTRGIGRAIAEKLASAGS-TVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLS--EESINKAFEEIYNL   82 (248)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCC--HHHHHHHHHHHHHh
Confidence            4678999987 9999999998888899 89999998876554322     24322 22  3332  122333333221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|++|++.|.
T Consensus        83 ~~~~d~vi~~Ag~   95 (248)
T 2pnf_A           83 VDGIDILVNNAGI   95 (248)
T ss_dssp             SSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2379999999873

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.25  E-value=0.013  Score=50.77  Aligned_cols=78  Identities=15%  Similarity=0.130  Sum_probs=51.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEE--EcCCCCCCccHHHHHHhhcC--CCccE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF--VNSKNCGDKSVSQIIIDMTD--GGADY  275 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v--~~~~~~~~~~~~~~i~~~~~--g~~dv  275 (388)
                      +.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+. .++-...  .|-.+  .+.+.+.+.+...  +++|+
T Consensus         5 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~~id~   81 (234)
T 2ehd_A            5 KGAVLITGASRGIGEATARLLHAKGY-RVGLMARDEKRLQALAAELEGALPLPGDVRE--EGDWARAVAAMEEAFGELSA   81 (234)
T ss_dssp             CCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC--HHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhhceEEEecCCC--HHHHHHHHHHHHHHcCCCCE
Confidence            568999987 9999999998888999 8999999887765443 3321122  23332  1223333322211  37999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      +|++.|.
T Consensus        82 li~~Ag~   88 (234)
T 2ehd_A           82 LVNNAGV   88 (234)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999873

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=96.24  E-value=0.0071  Score=54.78  Aligned_cols=75  Identities=13%  Similarity=0.073  Sum_probs=54.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHHHcCCc--EEEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~lga~--~v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      -.+.+|+|+|+|.+|.+++..+...|+.+|+++.++.++.+ +++.++..  .+++        + +.+.+.. +++|+|
T Consensus       139 l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~--------~-~~~~~~~-~~aDiv  208 (297)
T 2egg_A          139 LDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFS--------L-AEAETRL-AEYDII  208 (297)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEEC--------H-HHHHHTG-GGCSEE
T ss_pred             CCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceee--------H-HHHHhhh-ccCCEE
Confidence            35789999999999999999999899879999999988865 44455542  2221        1 1222222 279999


Q ss_pred             EEccCCHH
Q 016507          277 FECVGLAS  284 (388)
Q Consensus       277 id~~g~~~  284 (388)
                      |+|++...
T Consensus       209 In~t~~~~  216 (297)
T 2egg_A          209 INTTSVGM  216 (297)
T ss_dssp             EECSCTTC
T ss_pred             EECCCCCC
Confidence            99998653

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=96.24  E-value=0.037  Score=49.10  Aligned_cols=103  Identities=19%  Similarity=0.280  Sum_probs=64.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC-chHHHH----HHHcCCcEE---EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEI----GKRFGVTEF---VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~-~~~~~~----~~~lga~~v---~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++. +++.+.    ++..+....   .|-.+  .+.+.+.+.+... 
T Consensus        17 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   93 (270)
T 3is3_A           17 DGKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQ--VPEIVKLFDQAVAH   93 (270)
T ss_dssp             TTCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999987 9999999998888999 88886554 333332    233444322   23322  1223333332221 


Q ss_pred             -CCccEEEEccCCH-------------------------HHHHHHHHHhhcCCceEEEEccCC
Q 016507          271 -GGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       271 -g~~dvvid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                       +++|+++++.|..                         ...+.++..+.++ |+++.++...
T Consensus        94 ~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-g~iv~isS~~  155 (270)
T 3is3_A           94 FGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEG-GRIVLTSSNT  155 (270)
T ss_dssp             HSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCTT
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CeEEEEeCch
Confidence             3799999988841                         1134556666776 9999998743

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.24  E-value=0.0075  Score=51.07  Aligned_cols=132  Identities=18%  Similarity=0.266  Sum_probs=79.6

Q ss_pred             ceeeeEE-eecCceEEcCCCCCccccccccchhhhhHHHHHHhcC--CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEE
Q 016507          155 SFSEYTV-LDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRTAN--VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG  231 (388)
Q Consensus       155 ~~a~~~~-~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~--~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~  231 (388)
                      .|.+|.. .+....+.++..+++..+.. +    +... +.+...  +.++.+||-+|.|. |..+..+++. +..+|++
T Consensus        17 ~w~~~~~~~~~~~~~~~~~~~~f~~~~~-~----~~~~-~~~~l~~~~~~~~~vLDiG~G~-G~~~~~l~~~-~~~~v~~   88 (205)
T 3grz_A           17 EWEDYQPVFKDQEIIRLDPGLAFGTGNH-Q----TTQL-AMLGIERAMVKPLTVADVGTGS-GILAIAAHKL-GAKSVLA   88 (205)
T ss_dssp             TTCCCCCSSTTCEEEEESCC-----CCH-H----HHHH-HHHHHHHHCSSCCEEEEETCTT-SHHHHHHHHT-TCSEEEE
T ss_pred             cccccccCCCCceeEEecCCcccCCCCC-c----cHHH-HHHHHHHhccCCCEEEEECCCC-CHHHHHHHHC-CCCEEEE
Confidence            6778777 67788888888876665421 1    1111 112222  67889999999876 7777777764 5559999


Q ss_pred             EcCCchHHHHHHHc----CCc--EEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHH---HHHHHHHHhhcCCceEEE
Q 016507          232 VDVISEKFEIGKRF----GVT--EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS---LVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       232 ~~~~~~~~~~~~~l----ga~--~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~---~~~~~~~~l~~~~G~~v~  302 (388)
                      ++.++...+.+++.    +..  .++..+-   .       +...+.||+|+.......   .+..+.+.|+++ |.++.
T Consensus        89 vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~---~-------~~~~~~fD~i~~~~~~~~~~~~l~~~~~~L~~g-G~l~~  157 (205)
T 3grz_A           89 TDISDESMTAAEENAALNGIYDIALQKTSL---L-------ADVDGKFDLIVANILAEILLDLIPQLDSHLNED-GQVIF  157 (205)
T ss_dssp             EESCHHHHHHHHHHHHHTTCCCCEEEESST---T-------TTCCSCEEEEEEESCHHHHHHHGGGSGGGEEEE-EEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCceEEEeccc---c-------ccCCCCceEEEECCcHHHHHHHHHHHHHhcCCC-CEEEE
Confidence            99999887777652    432  2222211   1       112248999987654332   245556678887 88887


Q ss_pred             Ecc
Q 016507          303 LGV  305 (388)
Q Consensus       303 ~g~  305 (388)
                      ...
T Consensus       158 ~~~  160 (205)
T 3grz_A          158 SGI  160 (205)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            543

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=96.23  E-value=0.011  Score=52.90  Aligned_cols=79  Identities=20%  Similarity=0.381  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE-E--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ +.++... .  .|-.+  .+.+.+.+.+...  +++
T Consensus        28 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i  104 (277)
T 3gvc_A           28 AGKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKIGCGAAACRVDVSD--EQQIIAMVDACVAAFGGV  104 (277)
T ss_dssp             TTCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHCSSCEEEECCTTC--HHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHcCCcceEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999998888899 999999988776544 3454322 2  23333  1222222222211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus       105 D~lvnnAg~  113 (277)
T 3gvc_A          105 DKLVANAGV  113 (277)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=96.23  E-value=0.018  Score=52.57  Aligned_cols=89  Identities=16%  Similarity=0.240  Sum_probs=65.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      -.|.+|.|+|.|.+|...++.++.+|+ +|++.++++++. .+..+|+...         ++.+.+.     ..|+|+.+
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~~---------~l~ell~-----~aDvVvl~  203 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGM-KVLAYDILDIRE-KAEKINAKAV---------SLEELLK-----NSDVISLH  203 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSCCHH-HHHHTTCEEC---------CHHHHHH-----HCSEEEEC
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCcchh-HHHhcCceec---------CHHHHHh-----hCCEEEEe
Confidence            357899999999999999999999999 999999888764 3566776421         1333232     57899988


Q ss_pred             cCCHHH----H-HHHHHHhhcCCceEEEEcc
Q 016507          280 VGLASL----V-QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       280 ~g~~~~----~-~~~~~~l~~~~G~~v~~g~  305 (388)
                      ++....    + ...+..++++ +.++.++.
T Consensus       204 ~P~~~~t~~li~~~~l~~mk~g-a~lIn~ar  233 (313)
T 2ekl_A          204 VTVSKDAKPIIDYPQFELMKDN-VIIVNTSR  233 (313)
T ss_dssp             CCCCTTSCCSBCHHHHHHSCTT-EEEEESSC
T ss_pred             ccCChHHHHhhCHHHHhcCCCC-CEEEECCC
Confidence            874321    1 4567788886 77877764

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.22  E-value=0.0094  Score=52.80  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH-HHHHHcCCcEE-EcCCCCCCccHHHHHHhhc--CCCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF-EIGKRFGVTEF-VNSKNCGDKSVSQIIIDMT--DGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~-~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~--~g~~dv  275 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++. +.++..++..+ .|-.+  .+.+.+.+.+..  .+++|+
T Consensus        26 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           26 SSAPILITGASQRVGLHCALRLLEHGH-RVIISYRTEHASVTELRQAGAVALYGDFSC--ETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             -CCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESSCCHHHHHHHHHTCEEEECCTTS--HHHHHHHHHHHHHHCSCCSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHhcCCeEEECCCCC--HHHHHHHHHHHHHhcCCCCE
Confidence            4678999987 9999999998888899 899998887653 44555565332 23333  122333232221  237999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      ++++.|.
T Consensus       103 lv~nAg~  109 (260)
T 3gem_A          103 VVHNASE  109 (260)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999883

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=96.22  E-value=0.01  Score=52.30  Aligned_cols=79  Identities=19%  Similarity=0.323  Sum_probs=47.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCc-EE--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~-~v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ +.++.. ..  .|-.+  .+++.+.+.+...  |++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   82 (257)
T 3tpc_A            6 KSRVFIVTGASSGLGAAVTRMLAQEGA-TVLGLDLKPPAGEEPAAELGAAVRFRNADVTN--EADATAALAFAKQEFGHV   82 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSCC------------CEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999998888999 899999888765543 334332 12  23332  1223333322211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        83 d~lv~nAg~   91 (257)
T 3tpc_A           83 HGLVNCAGT   91 (257)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.22  E-value=0.014  Score=51.77  Aligned_cols=79  Identities=20%  Similarity=0.358  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-----cCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-----lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+     .+... .  .|-.+  .+...+.+.+... 
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   95 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAE--PDAPAELARRAAEA   95 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTS--TTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            4688999987 9999999998888999 89999998876554321     34322 1  23333  2333333332221 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        96 ~g~id~lv~nAg~  108 (266)
T 4egf_A           96 FGGLDVLVNNAGI  108 (266)
T ss_dssp             HTSCSEEEEECCC
T ss_pred             cCCCCEEEECCCc
Confidence             379999998873

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.21  E-value=0.013  Score=51.10  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCC--cEE--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--TEF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga--~~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+.  ..+  +|-+..+.+.+.+.+.+... 
T Consensus        13 ~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           13 KGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            5789999987 9999999998888999 8999999887765433    2231  122  22211111222222222211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        92 ~g~id~lv~nAg~  104 (247)
T 3i1j_A           92 FGRLDGLLHNASI  104 (247)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             CCCCCEEEECCcc
Confidence             379999999874

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=96.21  E-value=0.018  Score=52.14  Aligned_cols=80  Identities=25%  Similarity=0.317  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE---EEcCCCCCCccHHHHHHhhcC-
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE---FVNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~---v~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      -.+.+|||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+...   ..|-.+  .+.+.+.+.+... 
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  105 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRH--LDEMVRLADEAFRL  105 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHh
Confidence            35789999987 9999999998888999 8999999887765433    223322   223333  1223333322211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus       106 ~g~id~lvnnAg~  118 (301)
T 3tjr_A          106 LGGVDVVFSNAGI  118 (301)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             CCCCCEEEECCCc
Confidence             379999999883

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=96.20  E-value=0.019  Score=50.80  Aligned_cols=79  Identities=20%  Similarity=0.182  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cC--CcE-EEcCCCCCCccHHHHHHhhc--CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG--VTE-FVNSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lg--a~~-v~~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ +.  +.. ..|-.+  .+.+.+.+.+..  .|++
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d--~~~v~~~~~~~~~~~g~i   87 (263)
T 3ak4_A           11 SGRKAIVTGGSKGIGAAIARALDKAGA-TVAIADLDVMAAQAVVAGLENGGFAVEVDVTK--RASVDAAMQKAIDALGGF   87 (263)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCTTCCEEEECCTTC--HHHHHHHHHHHHHHHTCC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCC--HHHHHHHHHHHHHHcCCC
Confidence            4688999987 9999999998888999 99999998877654432 32  221 123333  122333332221  1379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        88 D~lv~~Ag~   96 (263)
T 3ak4_A           88 DLLCANAGV   96 (263)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999873

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=96.20  E-value=0.0088  Score=51.60  Aligned_cols=102  Identities=16%  Similarity=0.157  Sum_probs=68.3

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHc----CCc---EEEcCCCCCCccHHHHHH
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~l----ga~---~v~~~~~~~~~~~~~~i~  266 (388)
                      ......++.+||-+|.| .|..++.+++... ..+|++++.+++..+.+++.    |..   .++.      .+..+.+.
T Consensus        63 ~l~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~------~d~~~~~~  135 (229)
T 2avd_A           63 NLARLIQAKKALDLGTF-TGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL------KPALETLD  135 (229)
T ss_dssp             HHHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE------SCHHHHHH
T ss_pred             HHHHhcCCCEEEEEcCC-ccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEE------cCHHHHHH
Confidence            33456678899999987 6888888998763 33999999999888777652    431   1222      22333333


Q ss_pred             hhcC----CCccEEEEccCCH---HHHHHHHHHhhcCCceEEEEc
Q 016507          267 DMTD----GGADYCFECVGLA---SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       267 ~~~~----g~~dvvid~~g~~---~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ++..    +.||+|+-.....   ..+..+.+.|+++ |.++...
T Consensus       136 ~~~~~~~~~~~D~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~  179 (229)
T 2avd_A          136 ELLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAVLR  179 (229)
T ss_dssp             HHHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             HHHhcCCCCCccEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEEC
Confidence            3321    4799987644322   3478889999997 8887654

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=96.20  E-value=0.019  Score=51.25  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-H---HcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-K---RFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~---~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+ +   +.+... .  .|-.+  .+.+.+.+.+..  -
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   97 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERY   97 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4678999987 9999999998888999 899999988765432 2   224322 2  23332  122322222221  2


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        98 g~iD~lv~~Ag~  109 (277)
T 2rhc_B           98 GPVDVLVNNAGR  109 (277)
T ss_dssp             CSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999873

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.19  E-value=0.026  Score=51.26  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=50.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC---chHHHHH-HHc----CCc-EEEcCCCCCCcc-HHHHHHhhcC
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI---SEKFEIG-KRF----GVT-EFVNSKNCGDKS-VSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~---~~~~~~~-~~l----ga~-~v~~~~~~~~~~-~~~~i~~~~~  270 (388)
                      .+.++||+|+|++|.+++..+...|+++|+++.|+   .++.+.+ +++    +.. .+++..+   .+ +.+.+.    
T Consensus       147 ~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~---l~~~~~~l~----  219 (312)
T 3t4e_A          147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLAD---QHAFTEALA----  219 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTC---HHHHHHHHH----
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHh---hhhhHhhcc----
Confidence            57899999999999999999999999889999999   4444432 222    221 2333322   11 122221    


Q ss_pred             CCccEEEEccCCH
Q 016507          271 GGADYCFECVGLA  283 (388)
Q Consensus       271 g~~dvvid~~g~~  283 (388)
                       .+|+||+|++..
T Consensus       220 -~~DiIINaTp~G  231 (312)
T 3t4e_A          220 -SADILTNGTKVG  231 (312)
T ss_dssp             -HCSEEEECSSTT
T ss_pred             -CceEEEECCcCC
Confidence             689999998754

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=96.19  E-value=0.0082  Score=55.97  Aligned_cols=91  Identities=19%  Similarity=0.258  Sum_probs=62.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcE-EEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATR-IIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~-Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      -.|.+|.|+|.|.+|...++.++.+|+ + |++.+++..+.+.+..+|+..+        .++.+.+.     ..|+|+.
T Consensus       162 l~g~tvgIIG~G~IG~~vA~~l~~~G~-~~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvV~l  227 (364)
T 2j6i_A          162 IEGKTIATIGAGRIGYRVLERLVPFNP-KELLYYDYQALPKDAEEKVGARRV--------ENIEELVA-----QADIVTV  227 (364)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCC-SEEEEECSSCCCHHHHHHTTEEEC--------SSHHHHHH-----TCSEEEE
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCC-cEEEEECCCccchhHHHhcCcEec--------CCHHHHHh-----cCCEEEE
Confidence            367899999999999999999999999 6 9999988766666666775421        12333222     5677777


Q ss_pred             ccCCHH----HH-HHHHHHhhcCCceEEEEcc
Q 016507          279 CVGLAS----LV-QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       279 ~~g~~~----~~-~~~~~~l~~~~G~~v~~g~  305 (388)
                      +++...    .+ ...+..++++ +.++.++.
T Consensus       228 ~~P~t~~t~~li~~~~l~~mk~g-a~lIn~ar  258 (364)
T 2j6i_A          228 NAPLHAGTKGLINKELLSKFKKG-AWLVNTAR  258 (364)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCCChHHHHHhCHHHHhhCCCC-CEEEECCC
Confidence            776531    11 3455667775 66666653

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=96.18  E-value=0.018  Score=50.40  Aligned_cols=79  Identities=15%  Similarity=0.291  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE--E--EcCCCCCCccHHHHHHhhc-CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE--F--VNSKNCGDKSVSQIIIDMT-DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~--v--~~~~~~~~~~~~~~i~~~~-~g~~  273 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+ +.++...  .  .|-.+  .+.+.+.+.+.. .+++
T Consensus        10 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~i   86 (254)
T 2wsb_A           10 DGACAAVTGAGSGIGLEICRAFAASGA-RLILIDREAAALDRAAQELGAAVAARIVADVTD--AEAMTAAAAEAEAVAPV   86 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEEECCTTC--HHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcccceeEEEEecCC--HHHHHHHHHHHHhhCCC
Confidence            4678999987 9999999998888899 899999988766543 3344322  2  23332  122222222211 1479


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        87 d~li~~Ag~   95 (254)
T 2wsb_A           87 SILVNSAGI   95 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEECCcc
Confidence            999999873

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=96.18  E-value=0.021  Score=50.92  Aligned_cols=75  Identities=21%  Similarity=0.281  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE-E--EcCCCCCCccHHHHHHhhcCC--Cc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSVSQIIIDMTDG--GA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~-v--~~~~~~~~~~~~~~i~~~~~g--~~  273 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+. .++... +  .|-.+  .+.+.+.+.+. ..  +.
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~-~~~~~i  104 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELGNRAEFVSTNVTS--EDSVLAAIEAA-NQLGRL  104 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHH-TTSSEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHH-HHhCCC
Confidence            4678999987 9999999998888899 8999999888766543 455432 2  23333  13333333333 22  78


Q ss_pred             cEEEEc
Q 016507          274 DYCFEC  279 (388)
Q Consensus       274 dvvid~  279 (388)
                      |+++.+
T Consensus       105 d~lv~~  110 (281)
T 3ppi_A          105 RYAVVA  110 (281)
T ss_dssp             EEEEEC
T ss_pred             CeEEEc
Confidence            999988

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.17  E-value=0.012  Score=52.68  Aligned_cols=79  Identities=10%  Similarity=0.146  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c---CC-c-EE--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F---GV-T-EF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l---ga-~-~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.+ +   +. . ..  .|-.+  .+++.+.+.+... 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  108 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGD--PDQVAALFAAVRAE  108 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5788999987 9999999998888899 89999998876554332 2   11 1 22  23333  1223333322211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       |++|++|++.|.
T Consensus       109 ~g~iD~lvnnAG~  121 (281)
T 4dry_A          109 FARLDLLVNNAGS  121 (281)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999874

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=96.16  E-value=0.013  Score=52.18  Aligned_cols=80  Identities=16%  Similarity=0.189  Sum_probs=52.1

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCc-EE--EcCCCCCCccHHHHHHhhcC--CC
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GG  272 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~-~v--~~~~~~~~~~~~~~i~~~~~--g~  272 (388)
                      ..+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ +.++.. ..  .|-.+  .+.+.+.+.+...  |+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~  102 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGY-GVALAGRRLDALQETAAEIGDDALCVPTDVTD--PDSVRALFTATVEKFGR  102 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTSCCEEEECCTTS--HHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEecCCC--HHHHHHHHHHHHHHcCC
Confidence            35678999987 9999999998888899 899999988776544 344432 12  23332  1223332322211  37


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+++++.|.
T Consensus       103 iD~lVnnAg~  112 (272)
T 4dyv_A          103 VDVLFNNAGT  112 (272)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.15  E-value=0.019  Score=50.67  Aligned_cols=79  Identities=22%  Similarity=0.312  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-HHHHH-Hc----CCcE-EE--cCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIGK-RF----GVTE-FV--NSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-~~~~~-~l----ga~~-v~--~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++ .+.+. .+    +... .+  |-.+  .+.+.+.+.+...
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~   79 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK--GEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCC-EEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999998888999 89999988776 44322 22    4332 22  3222  1223333322211


Q ss_pred             --CCccEEEEccCC
Q 016507          271 --GGADYCFECVGL  282 (388)
Q Consensus       271 --g~~dvvid~~g~  282 (388)
                        +++|++|++.|.
T Consensus        80 ~~g~iD~lv~~Ag~   93 (260)
T 1x1t_A           80 QMGRIDILVNNAGI   93 (260)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             hcCCCCEEEECCCC
Confidence              379999999873

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.15  E-value=0.025  Score=49.92  Aligned_cols=78  Identities=17%  Similarity=0.178  Sum_probs=51.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-H---cCCcE-E--EcCCCCCCccHHHHHHhh---c
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGVTE-F--VNSKNCGDKSVSQIIIDM---T  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~---lga~~-v--~~~~~~~~~~~~~~i~~~---~  269 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .   .+... .  .|-.+  .+.+.+.+.+.   .
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQ--ESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCC--HHHHHHHHHHHHHhc
Confidence            4678999987 9999999998888899 8999998877654332 2   24322 2  23332  12233333332   1


Q ss_pred             CCCccEEEEccC
Q 016507          270 DGGADYCFECVG  281 (388)
Q Consensus       270 ~g~~dvvid~~g  281 (388)
                      .+++|+++++.|
T Consensus        81 ~g~id~lvnnAg   92 (260)
T 2qq5_A           81 QGRLDVLVNNAY   92 (260)
T ss_dssp             TTCCCEEEECCC
T ss_pred             CCCceEEEECCc
Confidence            358999999984

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=96.15  E-value=0.018  Score=50.71  Aligned_cols=79  Identities=28%  Similarity=0.381  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCCcE-E--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++++++.+. .+.++... +  .|-.+  .+.+.+.+.+...  +++
T Consensus        11 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   87 (265)
T 2o23_A           11 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNNCVFAPADVTS--EKDVQTALALAKGKFGRV   87 (265)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCcHhHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHHCCCC
Confidence            4679999987 9999999998888899 89999888766543 33444322 2  23332  1223333332211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        88 d~li~~Ag~   96 (265)
T 2o23_A           88 DVAVNCAGI   96 (265)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999999873

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=96.15  E-value=0.019  Score=50.08  Aligned_cols=79  Identities=18%  Similarity=0.238  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+.    +.+... .  .|-.+  .+.+.+.+.+..  .
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   80 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISD--IESIQNFFAEIKAEN   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999988888899 8999999887655433    234332 1  23332  122333333322  2


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        81 ~~id~li~~Ag~   92 (247)
T 3lyl_A           81 LAIDILVNNAGI   92 (247)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=96.15  E-value=0.017  Score=51.67  Aligned_cols=78  Identities=17%  Similarity=0.222  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCC--cE-EE--cCCCCCCccHHHHHHhhc--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--TE-FV--NSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga--~~-v~--~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+ +.+..  .. .+  |-.+  .+.+.+.+.+..  .+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSS--EAGARRLAQALGELSA  104 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTS--HHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCC--HHHHHHHHHHHHHhcC
Confidence            4678999987 9999999998888999 899999988765533 22311  21 11  2222  122222222221  24


Q ss_pred             CccEEEEccC
Q 016507          272 GADYCFECVG  281 (388)
Q Consensus       272 ~~dvvid~~g  281 (388)
                      ++|++|++.|
T Consensus       105 ~iD~lvnnAg  114 (276)
T 2b4q_A          105 RLDILVNNAG  114 (276)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            7999999987

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=96.14  E-value=0.034  Score=50.32  Aligned_cols=75  Identities=24%  Similarity=0.196  Sum_probs=54.6

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      .+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+....+...    +.   +     ...|+||-|+..
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~~~~~~----e~---~-----~~aDvvi~~vp~   74 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAEGACGAAASAR----EF---A-----GVVDALVILVVN   74 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEESSST----TT---T-----TTCSEEEECCSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCCccccCCHH----HH---H-----hcCCEEEEECCC
Confidence            479999999999999888888898 9999999999999888877754222111    11   0     156788888777


Q ss_pred             HHHHHHHH
Q 016507          283 ASLVQEAY  290 (388)
Q Consensus       283 ~~~~~~~~  290 (388)
                      +..+...+
T Consensus        75 ~~~~~~v~   82 (303)
T 3g0o_A           75 AAQVRQVL   82 (303)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            64344443

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.14  E-value=0.02  Score=51.75  Aligned_cols=79  Identities=20%  Similarity=0.289  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-c--hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEEE--cCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFV--NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g--~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v~--~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |  ++|.+.++.+...|+ +|++++++++..+.++    ..+....+  |-.+  .+.+.+.+.+... 
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSD--AESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 5  999999988888899 8999998876544433    33433333  3333  1223333332221 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       |++|++|++.|.
T Consensus       106 ~g~iD~lVnnAG~  118 (296)
T 3k31_A          106 WGSLDFVVHAVAF  118 (296)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             379999999874

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=96.13  E-value=0.015  Score=51.33  Aligned_cols=79  Identities=22%  Similarity=0.223  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+... .  .|-.+  .+.+.+.+.+...  
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTD--EQHREAVIKAALDQF   87 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5788999987 9999999988888899 8999999887655433    234332 2  23332  1222222222211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|+++++.|.
T Consensus        88 g~id~lv~nAg~   99 (256)
T 3gaf_A           88 GKITVLVNNAGG   99 (256)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=96.13  E-value=0.021  Score=50.35  Aligned_cols=168  Identities=15%  Similarity=0.183  Sum_probs=93.5

Q ss_pred             CCCEEEEEcc-c--hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCC-c-EE--EcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-T-EF--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g--~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga-~-~v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      .|+++||+|+ |  ++|.+.++.+...|+ +|+.++++++..+.+.    +++. . ..  .|-.+  .++..+.+.+..
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQS--DEEVINGFEQIG   81 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCC--HHHHHHHHHHHH
Confidence            5789999996 5  799999998889999 9999999887655443    3332 1 22  23333  122332222221


Q ss_pred             C--CCccEEEEccCCH--------------HHH---------------HHHHHHhhcCCceEEEEccCCCCCccccCH--
Q 016507          270 D--GGADYCFECVGLA--------------SLV---------------QEAYACCRKGWGKTIVLGVDQPGSQLSLSS--  316 (388)
Q Consensus       270 ~--g~~dvvid~~g~~--------------~~~---------------~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~--  316 (388)
                      .  |+.|+++++.|..              ..+               ......++.+ |+||.++...+....+-..  
T Consensus        82 ~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~-G~IVnisS~~~~~~~~~~~~Y  160 (256)
T 4fs3_A           82 KDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEG-GSIVATTYLGGEFAVQNYNVM  160 (256)
T ss_dssp             HHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTC-EEEEEEECGGGTSCCTTTHHH
T ss_pred             HHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CEEEEEeccccccCcccchhh
Confidence            1  4799999987731              001               1223345565 9999988643222211110  


Q ss_pred             ---------------HHHHhcCcEEEEeeecCCCc-----cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhc
Q 016507          317 ---------------FEVLHSGKILMGSLFGGLKA-----KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIK  376 (388)
Q Consensus       317 ---------------~~~~~~~~~i~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~  376 (388)
                                     .++-.+++++.....+....     ....++..+.+.+. .++.+    .-.-+|+.++.-+|.+
T Consensus       161 ~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~~~~~~~~~~~~~-~Pl~R----~g~peevA~~v~fL~S  235 (256)
T 4fs3_A          161 GVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIKER-APLKR----NVDQVEVGKTAAYLLS  235 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTCTTHHHHHHHHHHH-STTSS----CCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhccCCHHHHHHHHhc-CCCCC----CcCHHHHHHHHHHHhC
Confidence                           11234567776665543221     12234444444333 12222    2245788888888875


Q ss_pred             C
Q 016507          377 G  377 (388)
Q Consensus       377 ~  377 (388)
                      .
T Consensus       236 d  236 (256)
T 4fs3_A          236 D  236 (256)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=96.12  E-value=0.019  Score=50.72  Aligned_cols=79  Identities=13%  Similarity=0.216  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCc-EE--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVT-EF--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~-~v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+... ..  .|-.+  .+.+.+.+.+...  |++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g~i   82 (260)
T 1nff_A            6 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFGGL   82 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhcCceEEEecCCC--HHHHHHHHHHHHHHcCCC
Confidence            4678999987 9999999998888899 8999999887665433 33321 12  23333  1223333332211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        83 D~lv~~Ag~   91 (260)
T 1nff_A           83 HVLVNNAGI   91 (260)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999873

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.12  E-value=0.022  Score=50.62  Aligned_cols=79  Identities=18%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+.    ..+... +  .|-.+  .+.+.+.+.+..  .
T Consensus        30 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           30 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN--REDIYSSAKKVKAEI  106 (272)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCC--HHHHHHHHHHHHHHC
Confidence            4678999987 9999999998888899 8999999887654332    224322 2  23332  122333333221  2


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus       107 g~iD~li~~Ag~  118 (272)
T 1yb1_A          107 GDVSILVNNAGV  118 (272)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCcEEEECCCc
Confidence            379999999874

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.12  E-value=0.014  Score=52.08  Aligned_cols=79  Identities=18%  Similarity=0.260  Sum_probs=52.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE-E--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++.+.+. .++... .  .|-.+  .+.+.+.+.+...  +++
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~i   80 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGD-TVIGTARRTEALDDLVAAYPDRAEAISLDVTD--GERIDVVAADVLARYGRV   80 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHCTTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhccCCceEEEeeCCC--HHHHHHHHHHHHHhCCCC
Confidence            4578999987 9999999998888999 9999999887766543 343322 2  23333  1223332322211  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        81 d~lv~~Ag~   89 (281)
T 3m1a_A           81 DVLVNNAGR   89 (281)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCc
Confidence            999999874

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.11  E-value=0.0085  Score=53.27  Aligned_cols=79  Identities=20%  Similarity=0.182  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhcC--CCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~~--g~~dvv  276 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++.++.+.+....+.. ..|-.+  .+.+.+.+.+...  |++|++
T Consensus        15 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD~l   91 (266)
T 3p19_A           15 MKKLVVITGASSGIGEAIARRFSEEGH-PLLLLARRVERLKALNLPNTLCAQVDVTD--KYTFDTAITRAEKIYGPADAI   91 (266)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCHHHHHTTCCTTEEEEECCTTC--HHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHhhcCCceEEEecCCC--HHHHHHHHHHHHHHCCCCCEE
Confidence            4678999987 9999999998888999 8999998877665433222211 223333  1223333322211  379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.|.
T Consensus        92 vnnAg~   97 (266)
T 3p19_A           92 VNNAGM   97 (266)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999884

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.11  E-value=0.023  Score=50.19  Aligned_cols=79  Identities=25%  Similarity=0.359  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-H---cCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-R---FGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~---lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .   .+... +  .|-.+  .+.+.+.+.+...  
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   82 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   82 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            4678999987 9999999999888999 8999999877655432 2   24322 2  23333  1223222222211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        83 g~id~lv~nAg~   94 (262)
T 1zem_A           83 GKIDFLFNNAGY   94 (262)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.11  E-value=0.014  Score=56.36  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=68.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      -.|.+|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+. +        .++.+.+     ...|+|+-+
T Consensus       275 L~GktVgIIG~G~IG~~vA~~l~~~G~-~V~v~d~~~~~~~~a~~~G~~-~--------~~l~ell-----~~aDiVi~~  339 (494)
T 3d64_A          275 IAGKIAVVAGYGDVGKGCAQSLRGLGA-TVWVTEIDPICALQAAMEGYR-V--------VTMEYAA-----DKADIFVTA  339 (494)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSCHHHHHHHHTTTCE-E--------CCHHHHT-----TTCSEEEEC
T ss_pred             cCCCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCChHhHHHHHHcCCE-e--------CCHHHHH-----hcCCEEEEC
Confidence            478999999999999999999999999 999999888765334445553 1        1233322     268999999


Q ss_pred             cCCHHHH-HHHHHHhhcCCceEEEEccC
Q 016507          280 VGLASLV-QEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       280 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ++....+ ...++.++++ ..++.+|.-
T Consensus       340 ~~t~~lI~~~~l~~MK~g-AilINvgrg  366 (494)
T 3d64_A          340 TGNYHVINHDHMKAMRHN-AIVCNIGHF  366 (494)
T ss_dssp             SSSSCSBCHHHHHHCCTT-EEEEECSSS
T ss_pred             CCcccccCHHHHhhCCCC-cEEEEcCCC
Confidence            8655433 4778889997 888888863

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.11  E-value=0.02  Score=50.66  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhc--
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      -.+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+... .  .|-.+  .+.+.+.+.+..  
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   85 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITD--DAQVAHLVDETMKA   85 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            45789999987 9999999998888899 8999999887665433    233322 2  23333  122333232221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|++|++.|.
T Consensus        86 ~g~id~lv~nAg~   98 (264)
T 3ucx_A           86 YGRVDVVINNAFR   98 (264)
T ss_dssp             TSCCSEEEECCCS
T ss_pred             cCCCcEEEECCCC
Confidence            2379999998864

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.10  E-value=0.022  Score=50.23  Aligned_cols=41  Identities=20%  Similarity=0.162  Sum_probs=34.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~  242 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+
T Consensus         6 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~   47 (264)
T 2pd6_A            6 RSALALVTGAGSGIGRAVSVRLAGEGA-TVAACDLDRAAAQET   47 (264)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHH
Confidence            4678999987 9999999998888899 899999988766543

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.10  E-value=0.035  Score=50.64  Aligned_cols=91  Identities=20%  Similarity=0.244  Sum_probs=63.1

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCc-EEEEEcCCchHHHHHHHcCCc-EEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~-~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .+|.|+|.|.+|...++.++..|.. +|++.++++++.+.+.++|+. ...+.-    .++  .+     .+.|+||-|+
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~----~~~--~~-----~~aDvVilav  102 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSI----AKV--ED-----FSPDFVMLSS  102 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCT----TGG--GG-----GCCSEEEECS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCH----HHH--hh-----ccCCEEEEeC
Confidence            5899999999999999988888864 799999999999988888863 222211    110  11     1789999999


Q ss_pred             CCHHH---HHHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL---VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~---~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .....   +......++++ ..++.++.
T Consensus       103 p~~~~~~vl~~l~~~l~~~-~iv~d~~S  129 (314)
T 3ggo_A          103 PVRTFREIAKKLSYILSED-ATVTDQGS  129 (314)
T ss_dssp             CGGGHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred             CHHHHHHHHHHHhhccCCC-cEEEECCC
Confidence            87642   33444455564 55555554

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=96.10  E-value=0.012  Score=54.52  Aligned_cols=88  Identities=19%  Similarity=0.148  Sum_probs=62.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++. +.+.+...|+..+        .++.+.+.     ..|+|+-++
T Consensus       159 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~~~~~g~~~~--------~~l~ell~-----~aDiV~l~~  223 (352)
T 3gg9_A          159 KGQTLGIFGYGKIGQLVAGYGRAFGM-NVLVWGREN-SKERARADGFAVA--------ESKDALFE-----QSDVLSVHL  223 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSHH-HHHHHHHTTCEEC--------SSHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEECCCC-CHHHHHhcCceEe--------CCHHHHHh-----hCCEEEEec
Confidence            47899999999999999999999999 999998775 3455556676421        13333332     468888777


Q ss_pred             CCHHH-----HHHHHHHhhcCCceEEEEc
Q 016507          281 GLASL-----VQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       281 g~~~~-----~~~~~~~l~~~~G~~v~~g  304 (388)
                      .....     -...+..++++ ..++.++
T Consensus       224 Plt~~t~~li~~~~l~~mk~g-ailIN~a  251 (352)
T 3gg9_A          224 RLNDETRSIITVADLTRMKPT-ALFVNTS  251 (352)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred             cCcHHHHHhhCHHHHhhCCCC-cEEEECC
Confidence            63311     13566777876 7777776

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.09  E-value=0.023  Score=52.93  Aligned_cols=129  Identities=19%  Similarity=0.224  Sum_probs=82.6

Q ss_pred             CEEEEEccchhHHHHHHHHHHc-CCcEEE-EEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          203 STVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~-g~~~Vi-~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      -+|.|+|.|.+|...+..++.. ++ +++ +.++++++.+.++.+|+. ++       .++.+.+.+   ..+|+|+.|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~a~~~g~~-~~-------~~~~~ll~~---~~~D~V~i~t   73 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNL-EVHGVFDILAEKREAAAQKGLK-IY-------ESYEAVLAD---EKVDAVLIAT   73 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTE-EEEEEECSSHHHHHHHHTTTCC-BC-------SCHHHHHHC---TTCCEEEECS
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHhcCCc-ee-------CCHHHHhcC---CCCCEEEEcC
Confidence            3789999999999888777665 66 665 457788887777777763 21       234444432   2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH-------HhcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV-------LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-------~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      ......+.+..++..  |+-|++.     +++..+....       -.+++.+.-...  +.....++.+.+++.+|.+
T Consensus        74 p~~~h~~~~~~al~a--GkhVl~E-----KP~a~~~~ea~~l~~~a~~~g~~~~v~~~--~r~~p~~~~~k~~i~~g~i  143 (359)
T 3e18_A           74 PNDSHKELAISALEA--GKHVVCE-----KPVTMTSEDLLAIMDVAKRVNKHFMVHQN--RRWDEDFLIIKEMFEQKTI  143 (359)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEEE-----SSCCSSHHHHHHHHHHHHHHTCCEEEECG--GGGCHHHHHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHHC--CCCEEee-----CCCcCCHHHHHHHHHHHHHhCCeEEEEee--eccCHHHHHHHHHHHcCCC
Confidence            988878888888887  4545553     3334443321       123444332211  2223567788888888855

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=96.08  E-value=0.015  Score=50.78  Aligned_cols=79  Identities=22%  Similarity=0.249  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcC---CcEE--EcCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG---VTEF--VNSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lg---a~~v--~~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      .+.++||+|+ |.+|...++.+...|+ +|+++++++++.+.+. .+.   --.+  .|-.+  .+.+.+.+.+...  +
T Consensus         5 ~~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   81 (251)
T 1zk4_A            5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD--EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCC--HHHHHHHHHHHHHHhC
Confidence            4678999987 9999999998888899 8999999877655432 232   1122  23332  1223333322211  3


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus        82 ~id~li~~Ag~   92 (251)
T 1zk4_A           82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=96.08  E-value=0.04  Score=48.88  Aligned_cols=86  Identities=14%  Similarity=0.147  Sum_probs=60.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +.+++|+|+|++|.+++..+...|. +|+++.|+.++.+.+.++++. +...++     +       .  .+|+||+|++
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~-~v~V~nRt~~ka~~la~~~~~-~~~~~~-----l-------~--~~DiVInaTp  181 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGL-QVSVLNRSSRGLDFFQRLGCD-CFMEPP-----K-------S--AFDLIINATS  181 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCTTHHHHHHHTCE-EESSCC-----S-------S--CCSEEEECCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCe-EecHHH-----h-------c--cCCEEEEccc
Confidence            8899999999999999999999995 999999999887655577753 333222     1       1  7899999987


Q ss_pred             CHH----HH--HHHHHHhhcCCceEEEEc
Q 016507          282 LAS----LV--QEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       282 ~~~----~~--~~~~~~l~~~~G~~v~~g  304 (388)
                      ...    .+  ......++++ ..++.+.
T Consensus       182 ~Gm~~~~~l~~~~l~~~l~~~-~~v~D~v  209 (269)
T 3phh_A          182 ASLHNELPLNKEVLKGYFKEG-KLAYDLA  209 (269)
T ss_dssp             TCCCCSCSSCHHHHHHHHHHC-SEEEESC
T ss_pred             CCCCCCCCCChHHHHhhCCCC-CEEEEeC
Confidence            431    01  2222356775 6666664

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=96.08  E-value=0.011  Score=55.45  Aligned_cols=90  Identities=16%  Similarity=0.086  Sum_probs=61.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++..+.+....+|+..+        .++.+.+ +    ..|+|+.++
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~-~V~~~d~~~~~~~~~~~~G~~~~--------~~l~ell-~----~aDvV~l~~  255 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATREDMY-P----VCDVVTLNC  255 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHG-G----GCSEEEECS
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCC-EEEEEcCCccchhhHhhcCceec--------CCHHHHH-h----cCCEEEEec
Confidence            57899999999999999999999999 99999988766666666675421        1222222 1    567777776


Q ss_pred             CCHHH----H-HHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL----V-QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~----~-~~~~~~l~~~~G~~v~~g~  305 (388)
                      .....    + ...+..++++ ..++.++.
T Consensus       256 Plt~~t~~li~~~~l~~mk~g-ailIN~aR  284 (393)
T 2nac_A          256 PLHPETEHMINDETLKLFKRG-AYIVNTAR  284 (393)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             CCchHHHHHhhHHHHhhCCCC-CEEEECCC
Confidence            63211    1 3556667775 66666653

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.08  E-value=0.018  Score=51.34  Aligned_cols=74  Identities=12%  Similarity=0.101  Sum_probs=52.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      ++.+++|+|+|.+|.++++.+...|+ +|+++.++.++.+ +++.++...-++..+  ..+    +.+   +++|+++++
T Consensus       118 ~~k~vlViGaGg~g~a~a~~L~~~G~-~V~v~~R~~~~~~~la~~~~~~~~~~~~~--~~~----~~~---~~~DivVn~  187 (271)
T 1nyt_A          118 PGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALS--MDE----LEG---HEFDLIINA  187 (271)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECC--SGG----GTT---CCCSEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHhhccCCeeEec--HHH----hcc---CCCCEEEEC
Confidence            67899999999999999999999997 9999999988764 444454310011111  011    111   489999999


Q ss_pred             cCCHH
Q 016507          280 VGLAS  284 (388)
Q Consensus       280 ~g~~~  284 (388)
                      ++...
T Consensus       188 t~~~~  192 (271)
T 1nyt_A          188 TSSGI  192 (271)
T ss_dssp             CSCGG
T ss_pred             CCCCC
Confidence            99765

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.07  E-value=0.022  Score=50.90  Aligned_cols=79  Identities=18%  Similarity=0.204  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEE---EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v---~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.    ..+....   .|-.+  .+.+.+.+.+...  
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~   99 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTS--TDEVHAAVAAAVERF   99 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHHc
Confidence            5789999987 9999999988888899 8999999887655432    2343321   23333  1223233332221  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      |++|++|++.|.
T Consensus       100 g~id~lv~nAg~  111 (279)
T 3sju_A          100 GPIGILVNSAGR  111 (279)
T ss_dssp             CSCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            379999999874

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.07  E-value=0.017  Score=53.43  Aligned_cols=79  Identities=25%  Similarity=0.305  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-----------HHHHHHcCCcEE---EcCCCCCCccHHHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-----------FEIGKRFGVTEF---VNSKNCGDKSVSQII  265 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-----------~~~~~~lga~~v---~~~~~~~~~~~~~~i  265 (388)
                      .|.++||+|+ +.+|.+.++.+...|+ +|+++++++++           .+.++..|....   .|-.+  .+.+.+.+
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga-~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d--~~~v~~~~  120 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGA-NIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRD--EQQISAAV  120 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCC-EEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHH
Confidence            5789999987 9999999998888899 89999888763           222334444322   24333  12233333


Q ss_pred             HhhcC--CCccEEEEccCC
Q 016507          266 IDMTD--GGADYCFECVGL  282 (388)
Q Consensus       266 ~~~~~--g~~dvvid~~g~  282 (388)
                      .+...  |++|++|++.|.
T Consensus       121 ~~~~~~~g~iDilVnnAG~  139 (346)
T 3kvo_A          121 EKAIKKFGGIDILVNNASA  139 (346)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            32221  389999999884

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=96.07  E-value=0.01  Score=52.02  Aligned_cols=75  Identities=21%  Similarity=0.301  Sum_probs=51.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc--hHHHHHHHcCCcEE---EcCCCCCCccHHHHHHhhc-CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRFGVTEF---VNSKNCGDKSVSQIIIDMT-DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~--~~~~~~~~lga~~v---~~~~~~~~~~~~~~i~~~~-~g~~  273 (388)
                      .|+++||+|+ +++|.+.++.+-..|+ +|++++++.  +..+.+++.|....   .|-.+   +..   +++.. .++.
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d---~~~---v~~~~~~g~i   80 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAKDGGNASALLIDFAD---PLA---AKDSFTDAGF   80 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTS---TTT---TTTSSTTTCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCC---HHH---HHHHHHhCCC
Confidence            4788899987 9999999999999999 899998875  33455666665432   23222   221   22222 2489


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        81 DiLVNNAGi   89 (247)
T 4hp8_A           81 DILVNNAGI   89 (247)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999884

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.06  E-value=0.027  Score=49.91  Aligned_cols=77  Identities=18%  Similarity=0.142  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----Hc--CCcE-E--EcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RF--GVTE-F--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~l--ga~~-v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..  +... .  .|-.+   .+..+.+.+. -
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~---~~~~~~~~~~-~   83 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGA-NVLINGRREENVNETIKEIRAQYPDAILQPVVADLGT---EQGCQDVIEK-Y   83 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTS---HHHHHHHHHH-C
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCC---HHHHHHHHHh-c
Confidence            4678999987 9999999998888999 8999999887654322    22  2211 1  23322   3323333322 1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|+++++.|.
T Consensus        84 g~id~lv~nAg~   95 (267)
T 3t4x_A           84 PKVDILINNLGI   95 (267)
T ss_dssp             CCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            479999999884

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.05  E-value=0.015  Score=50.64  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcC--CcEEEEEcCCchHHHHHHHc-CCc-EE--EcCCCCCCccHHHHHHh---hcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRF-GVT-EF--VNSKNCGDKSVSQIIID---MTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g--~~~Vi~~~~~~~~~~~~~~l-ga~-~v--~~~~~~~~~~~~~~i~~---~~~  270 (388)
                      .+.+|||+|+ |.+|..+++.+...|  + +|+++++++++.+.++++ +.. .+  .|-.+  .+.+.+.+.+   ..+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~-~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~g   78 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIR-HIIATARDVEKATELKSIKDSRVHVLPLTVTC--DKSLDTFVSKVGEIVG   78 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCC-EEEEEESSGGGCHHHHTCCCTTEEEEECCTTC--HHHHHHHHHHHHHHHG
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCc-EEEEEecCHHHHHHHHhccCCceEEEEeecCC--HHHHHHHHHHHHHhcC
Confidence            3568999987 999999999888889  7 999999988877666554 222 12  23322  1222222222   222


Q ss_pred             C-CccEEEEccCC
Q 016507          271 G-GADYCFECVGL  282 (388)
Q Consensus       271 g-~~dvvid~~g~  282 (388)
                      . ++|++|++.|.
T Consensus        79 ~~~id~li~~Ag~   91 (250)
T 1yo6_A           79 SDGLSLLINNAGV   91 (250)
T ss_dssp             GGCCCEEEECCCC
T ss_pred             CCCCcEEEECCcc
Confidence            1 69999998863

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=96.05  E-value=0.023  Score=48.81  Aligned_cols=102  Identities=15%  Similarity=0.094  Sum_probs=68.3

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcC-----CcEEEEEcCCchHHHHHHHc----C-----Cc--EEEcCCCCCCccH
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCG-----ATRIIGVDVISEKFEIGKRF----G-----VT--EFVNSKNCGDKSV  261 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g-----~~~Vi~~~~~~~~~~~~~~l----g-----a~--~v~~~~~~~~~~~  261 (388)
                      .++++++||-+|.|. |..+..+++..+     ..+|++++.+++..+.+++.    +     .+  .++..+-  ...+
T Consensus        77 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~--~~~~  153 (227)
T 2pbf_A           77 VLKPGSRAIDVGSGS-GYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI--YQVN  153 (227)
T ss_dssp             TSCTTCEEEEESCTT-SHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG--GGCC
T ss_pred             hCCCCCEEEEECCCC-CHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh--Hhcc
Confidence            578899999999876 888888888875     12899999999887776643    3     11  1222111  0111


Q ss_pred             HHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          262 SQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       262 ~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .+...  ..+.||+|+........+..+.+.|+++ |+++..-.
T Consensus       154 ~~~~~--~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~  194 (227)
T 2pbf_A          154 EEEKK--ELGLFDAIHVGASASELPEILVDLLAEN-GKLIIPIE  194 (227)
T ss_dssp             HHHHH--HHCCEEEEEECSBBSSCCHHHHHHEEEE-EEEEEEEE
T ss_pred             cccCc--cCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEc
Confidence            00001  1237999988776655568889999997 98876643

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=96.05  E-value=0.0061  Score=55.76  Aligned_cols=102  Identities=24%  Similarity=0.297  Sum_probs=69.5

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHHc----CCcE--EEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKRF----GVTE--FVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~l----ga~~--v~~~~~~~~~~~~~~i  265 (388)
                      +.....++++++||-+|.|. |..++.+++..+ -.+|++++.+++..+.+++.    |...  ++..      +..+.+
T Consensus        67 l~~~l~~~~~~~VLDiGcG~-G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~------d~~~~~  139 (317)
T 1dl5_A           67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCG------DGYYGV  139 (317)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES------CGGGCC
T ss_pred             HHHhcCCCCcCEEEEecCCc-hHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEEC------Chhhcc
Confidence            45667889999999999876 788888887654 13799999999888777653    4432  2221      111111


Q ss_pred             HhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEc
Q 016507          266 IDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      .  ..+.||+|+...........+.+.|+++ |+++..-
T Consensus       140 ~--~~~~fD~Iv~~~~~~~~~~~~~~~Lkpg-G~lvi~~  175 (317)
T 1dl5_A          140 P--EFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVPI  175 (317)
T ss_dssp             G--GGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEEB
T ss_pred             c--cCCCeEEEEEcCCHHHHHHHHHHhcCCC-cEEEEEE
Confidence            1  1237999998766544346788899997 9887663

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.05  E-value=0.018  Score=50.88  Aligned_cols=79  Identities=19%  Similarity=0.143  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHh---hc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIID---MT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~---~~  269 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+.    ..+... +  .|-.+  .+.+.+.+.+   ..
T Consensus        13 ~~k~vlITGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           13 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL--RPEREKLMQTVSSMF   89 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCC--HHHHHHHHHHHHHHh
Confidence            4678999987 9999999998888899 8999998877654322    223322 2  23222  1222222222   22


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      ++++|++|++.|.
T Consensus        90 ~~~id~li~~Ag~  102 (266)
T 1xq1_A           90 GGKLDILINNLGA  102 (266)
T ss_dssp             TTCCSEEEEECCC
T ss_pred             CCCCcEEEECCCC
Confidence            2589999999874

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.05  E-value=0.026  Score=49.60  Aligned_cols=78  Identities=23%  Similarity=0.314  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+    +..+... +  .|-.+  .+.+.+.+.+...  
T Consensus        12 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGAQNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTN--TESVQNAVRSVHEQE   88 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999998888899 899999887665432    2224322 2  23332  1223333332211  


Q ss_pred             CCccEEEEccC
Q 016507          271 GGADYCFECVG  281 (388)
Q Consensus       271 g~~dvvid~~g  281 (388)
                      +++|++|++.|
T Consensus        89 ~~id~vi~~Ag   99 (260)
T 3awd_A           89 GRVDILVACAG   99 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37999999887

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.04  E-value=0.023  Score=50.35  Aligned_cols=79  Identities=19%  Similarity=0.120  Sum_probs=51.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-----cCCc-E-E--EcCCCCCCccHHHHHHhhc-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-----FGVT-E-F--VNSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-----lga~-~-v--~~~~~~~~~~~~~~i~~~~-  269 (388)
                      .+.++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+.+     .+.. . .  .|-.+  .....+.+.+.. 
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   83 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLD--ALQVRAFAEACER   83 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 89999998876554322     2222 1 2  23333  122222222221 


Q ss_pred             -CCCccEEEEccCC
Q 016507          270 -DGGADYCFECVGL  282 (388)
Q Consensus       270 -~g~~dvvid~~g~  282 (388)
                       .+++|+++++.|.
T Consensus        84 ~~g~id~lvnnAg~   97 (265)
T 3lf2_A           84 TLGCASILVNNAGQ   97 (265)
T ss_dssp             HHCSCSEEEECCCC
T ss_pred             HcCCCCEEEECCCC
Confidence             1379999999884

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.04  E-value=0.023  Score=50.01  Aligned_cols=78  Identities=22%  Similarity=0.283  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH---HHcCCcEE-E--cCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG---KRFGVTEF-V--NSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~---~~lga~~v-~--~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++++ .+.+   .+.+.... +  |-.+  .+.+.+.+.+...  +
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~-~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g   78 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGA-NIVLNGFGDP-APALAEIARHGVKAVHHPADLSD--VAQIEALFALAEREFG   78 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEECSSCC-HHHHHHHHTTSCCEEEECCCTTS--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCch-HHHHHHHHhcCCceEEEeCCCCC--HHHHHHHHHHHHHHcC
Confidence            4678999987 9999999998888999 8999988765 2222   22343322 2  3222  1223333322211  3


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus        79 ~id~lv~~Ag~   89 (255)
T 2q2v_A           79 GVDILVNNAGI   89 (255)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=96.04  E-value=0.019  Score=53.25  Aligned_cols=90  Identities=21%  Similarity=0.302  Sum_probs=61.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~-~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      -.|.+|.|+|.|.+|...++.++ ..|+ +|++.++++++.+.+.++|+..+        .++.+.+.     ..|+|+.
T Consensus       161 l~g~~vgIIG~G~IG~~vA~~l~~~~G~-~V~~~d~~~~~~~~~~~~g~~~~--------~~l~ell~-----~aDvVil  226 (348)
T 2w2k_A          161 PRGHVLGAVGLGAIQKEIARKAVHGLGM-KLVYYDVAPADAETEKALGAERV--------DSLEELAR-----RSDCVSV  226 (348)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHHH-----HCSEEEE
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHhcCC-EEEEECCCCcchhhHhhcCcEEe--------CCHHHHhc-----cCCEEEE
Confidence            45789999999999999999999 9999 99999988776666666665421        12322222     4678877


Q ss_pred             ccCCHHH----H-HHHHHHhhcCCceEEEEc
Q 016507          279 CVGLASL----V-QEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       279 ~~g~~~~----~-~~~~~~l~~~~G~~v~~g  304 (388)
                      ++.....    + ...+..++++ ..++.++
T Consensus       227 ~vp~~~~t~~li~~~~l~~mk~g-ailin~s  256 (348)
T 2w2k_A          227 SVPYMKLTHHLIDEAFFAAMKPG-SRIVNTA  256 (348)
T ss_dssp             CCCCSGGGTTCBCHHHHHHSCTT-EEEEECS
T ss_pred             eCCCChHHHHHhhHHHHhcCCCC-CEEEECC
Confidence            7764321    1 2455667665 5665554

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=96.03  E-value=0.036  Score=49.50  Aligned_cols=99  Identities=11%  Similarity=0.147  Sum_probs=69.1

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCc---EEEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~---~v~~~~~~~~~~~~~~i  265 (388)
                      +.....+.++.+||-+|.|. |..+..+++..|+ +|++++.+++..+.+++.    |..   .++.. +     +    
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~-d-----~----  123 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-G-----W----  123 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-C-----G----
T ss_pred             HHHHcCCCCcCEEEEECCcc-cHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEEC-C-----h----
Confidence            44556788999999999866 7788888877788 999999999888877653    321   12211 1     1    


Q ss_pred             HhhcCCCccEEEEc-----cC---CHHHHHHHHHHhhcCCceEEEEcc
Q 016507          266 IDMTDGGADYCFEC-----VG---LASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g~~dvvid~-----~g---~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .++. +.||+|+..     ++   -...+..+.+.|+++ |.++....
T Consensus       124 ~~~~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  169 (287)
T 1kpg_A          124 EQFD-EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHTI  169 (287)
T ss_dssp             GGCC-CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEEE
T ss_pred             hhCC-CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCC-CEEEEEEe
Confidence            1122 589999865     22   124478889999998 99887654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.03  E-value=0.031  Score=49.22  Aligned_cols=94  Identities=22%  Similarity=0.371  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-EEEcCCCCCCccHHHHHHhhcCCCc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +.++++||-+|.|. |..++.+++ .|+ +|++++.++...+.+++    .+.. .++.      .++.+.   +..+.|
T Consensus       118 ~~~~~~VLDiGcG~-G~l~~~la~-~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~------~d~~~~---~~~~~f  185 (254)
T 2nxc_A          118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE------GSLEAA---LPFGPF  185 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE------SCHHHH---GGGCCE
T ss_pred             cCCCCEEEEecCCC-cHHHHHHHH-hCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEE------CChhhc---CcCCCC
Confidence            67899999999866 777777666 577 99999999988777665    3432 2221      233332   223489


Q ss_pred             cEEEEccCC---HHHHHHHHHHhhcCCceEEEEcc
Q 016507          274 DYCFECVGL---ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       274 dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      |+|+.....   ...+..+.+.++++ |.++..+.
T Consensus       186 D~Vv~n~~~~~~~~~l~~~~~~Lkpg-G~lils~~  219 (254)
T 2nxc_A          186 DLLVANLYAELHAALAPRYREALVPG-GRALLTGI  219 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CEEEECCcHHHHHHHHHHHHHHcCCC-CEEEEEee
Confidence            999975432   23367788889997 99988765

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=96.02  E-value=0.028  Score=51.78  Aligned_cols=87  Identities=24%  Similarity=0.360  Sum_probs=60.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .+.+|.|+|.|.+|...++.++..|+ +|++.++++++ +.+..+|+..         .++.+.+.     ..|+|+.++
T Consensus       149 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~---------~~l~~~l~-----~aDvVil~v  212 (334)
T 2dbq_A          149 YGKTIGIIGLGRIGQAIAKRAKGFNM-RILYYSRTRKE-EVERELNAEF---------KPLEDLLR-----ESDFVVLAV  212 (334)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCH-HHHHHHCCEE---------CCHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCC-EEEEECCCcch-hhHhhcCccc---------CCHHHHHh-----hCCEEEECC
Confidence            46799999999999999999999999 99999998877 5555666531         12333222     468888877


Q ss_pred             CCHHH----H-HHHHHHhhcCCceEEEEc
Q 016507          281 GLASL----V-QEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       281 g~~~~----~-~~~~~~l~~~~G~~v~~g  304 (388)
                      +....    + ...+..++++ ..++.++
T Consensus       213 p~~~~t~~~i~~~~~~~mk~~-ailIn~s  240 (334)
T 2dbq_A          213 PLTRETYHLINEERLKLMKKT-AILINIA  240 (334)
T ss_dssp             CCCTTTTTCBCHHHHHHSCTT-CEEEECS
T ss_pred             CCChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence            65431    2 3456667775 6666655

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.02  E-value=0.022  Score=50.33  Aligned_cols=103  Identities=12%  Similarity=0.063  Sum_probs=64.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH---HcCCcE---EEcCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK---RFGVTE---FVNSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~---~lga~~---v~~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      +|+++||+|+ +++|.+.++.+...|+ +|+++++++++.+.++   +.+...   ..|-.+  ..+..+.+.+...  |
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~v~~~~~~~G   82 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQD--DAQCRDAVAQTIATFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            5788999987 9999999988888999 8999988876544433   334322   223333  1223222322222  4


Q ss_pred             CccEEEEccCCH------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          272 GADYCFECVGLA------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       272 ~~dvvid~~g~~------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +.|+++++.|..                        ...+.++..++.+.|++|.++..
T Consensus        83 ~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~IVnisS~  141 (258)
T 4gkb_A           83 RLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRGAIVNISSK  141 (258)
T ss_dssp             CCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCT
T ss_pred             CCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEeeh
Confidence            799999998741                        11234445554323999999864

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=96.02  E-value=0.031  Score=49.10  Aligned_cols=102  Identities=16%  Similarity=0.216  Sum_probs=71.0

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc----EEEcCCCCCCccHHHHHHhh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT----EFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~----~v~~~~~~~~~~~~~~i~~~  268 (388)
                      +.....+.++.+||-+|.| .|..+..+++..++ +|++++.+++..+.+++....    .++..+-   .++     .+
T Consensus        47 ~~~~~~~~~~~~vLdiG~G-~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~---~~~-----~~  116 (266)
T 3ujc_A           47 ILSDIELNENSKVLDIGSG-LGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGNNKIIFEANDI---LTK-----EF  116 (266)
T ss_dssp             HTTTCCCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSCTTEEEEECCT---TTC-----CC
T ss_pred             HHHhcCCCCCCEEEEECCC-CCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcCCCeEEEECcc---ccC-----CC
Confidence            4566678899999999987 58888888887687 999999999999888875422    1222111   111     11


Q ss_pred             cCCCccEEEEccCC--------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          269 TDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       269 ~~g~~dvvid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ..+.||+|+.....        ...+..+.+.|+++ |.++....
T Consensus       117 ~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~  160 (266)
T 3ujc_A          117 PENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPT-GTLLITDY  160 (266)
T ss_dssp             CTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCC-CEEEEEEe
Confidence            22389999875332        13367888999997 99887764

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.01  E-value=0.026  Score=50.87  Aligned_cols=78  Identities=12%  Similarity=0.168  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc----CCcE-E--EcCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVTE-F--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l----ga~~-v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+    +... +  .|-.+  .+.+.+.+.+..  
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~  101 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD--PDMVQNTVSELIKV  101 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 8999999887654332 22    4322 2  23332  122333332221  


Q ss_pred             CCCccEEEEccC
Q 016507          270 DGGADYCFECVG  281 (388)
Q Consensus       270 ~g~~dvvid~~g  281 (388)
                      .+++|++|++.|
T Consensus       102 ~g~id~li~~Ag  113 (302)
T 1w6u_A          102 AGHPNIVINNAA  113 (302)
T ss_dssp             TCSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            237899999987

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.01  E-value=0.027  Score=50.28  Aligned_cols=34  Identities=29%  Similarity=0.242  Sum_probs=30.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~   43 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRC   43 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence            5789999987 9999999999989999 89999886

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.01  E-value=0.02  Score=51.34  Aligned_cols=79  Identities=24%  Similarity=0.319  Sum_probs=50.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-----------HHHHHHcCCcEE---EcCCCCCCccHHHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-----------FEIGKRFGVTEF---VNSKNCGDKSVSQII  265 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-----------~~~~~~lga~~v---~~~~~~~~~~~~~~i  265 (388)
                      .+.++||+|+ +++|.+.++.+...|+ +|+++++++++           .+.++..+....   .|-.+  .+.+.+.+
T Consensus         8 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~   84 (285)
T 3sc4_A            8 RGKTMFISGGSRGIGLAIAKRVAADGA-NVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRD--GDAVAAAV   84 (285)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHTTTC-EEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTS--HHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHH
Confidence            4689999987 9999999998888899 89999888752           222333444322   23333  12233323


Q ss_pred             HhhcC--CCccEEEEccCC
Q 016507          266 IDMTD--GGADYCFECVGL  282 (388)
Q Consensus       266 ~~~~~--g~~dvvid~~g~  282 (388)
                      .+...  ++.|++|++.|.
T Consensus        85 ~~~~~~~g~id~lvnnAg~  103 (285)
T 3sc4_A           85 AKTVEQFGGIDICVNNASA  103 (285)
T ss_dssp             HHHHHHHSCCSEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCC
Confidence            32221  379999999884

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=96.01  E-value=0.022  Score=49.47  Aligned_cols=101  Identities=18%  Similarity=0.219  Sum_probs=68.1

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHcC-----CcEEEcCCCCCCccHHHHHHhh
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFG-----VTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~lg-----a~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      +...++||++||=+|+|+ |..+..+|+..|. .+|++++.+++..+.+++.-     ...+.....    .. +.. ..
T Consensus        71 ~~l~ikpG~~VldlG~G~-G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~----~p-~~~-~~  143 (233)
T 4df3_A           71 IELPVKEGDRILYLGIAS-GTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDAR----FP-EKY-RH  143 (233)
T ss_dssp             SCCCCCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTT----CG-GGG-TT
T ss_pred             hhcCCCCCCEEEEecCcC-CHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEecc----Cc-ccc-cc
Confidence            456799999999999876 8888899998774 38999999998887766532     223332211    11 011 11


Q ss_pred             cCCCccEEEEccCCH----HHHHHHHHHhhcCCceEEEE
Q 016507          269 TDGGADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       269 ~~g~~dvvid~~g~~----~~~~~~~~~l~~~~G~~v~~  303 (388)
                      ..+.+|+||......    ..+..+.+.|+++ |+++..
T Consensus       144 ~~~~vDvVf~d~~~~~~~~~~l~~~~r~LKpG-G~lvI~  181 (233)
T 4df3_A          144 LVEGVDGLYADVAQPEQAAIVVRNARFFLRDG-GYMLMA  181 (233)
T ss_dssp             TCCCEEEEEECCCCTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ccceEEEEEEeccCChhHHHHHHHHHHhccCC-CEEEEE
Confidence            123789988655543    2366778889998 998764

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.00  E-value=0.037  Score=47.63  Aligned_cols=101  Identities=15%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch-HH-HHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE-KF-EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~-~~-~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .|.+|||+|+|.+|...++.+...|+ +|++++.... .. +++...++. .+. +.....+       +  .++|+||-
T Consensus        30 ~gk~VLVVGgG~va~~ka~~Ll~~GA-~VtVvap~~~~~l~~l~~~~~i~-~i~-~~~~~~d-------L--~~adLVIa   97 (223)
T 3dfz_A           30 KGRSVLVVGGGTIATRRIKGFLQEGA-AITVVAPTVSAEINEWEAKGQLR-VKR-KKVGEED-------L--LNVFFIVV   97 (223)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHGGGCC-CEEEECSSCCHHHHHHHHTTSCE-EEC-SCCCGGG-------S--SSCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECCCCCHHHHHHHHcCCcE-EEE-CCCCHhH-------h--CCCCEEEE
Confidence            47889999999999999999999999 8888875432 22 233332333 222 2211111       1  27999999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccC
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLS  315 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~  315 (388)
                      +++.+. ++..+...+.. |..|.....+....+-+|
T Consensus        98 AT~d~~-~N~~I~~~ak~-gi~VNvvD~p~~~~f~~P  132 (223)
T 3dfz_A           98 ATNDQA-VNKFVKQHIKN-DQLVNMASSFSDGNIQIP  132 (223)
T ss_dssp             CCCCTH-HHHHHHHHSCT-TCEEEC-----CCSEECC
T ss_pred             CCCCHH-HHHHHHHHHhC-CCEEEEeCCcccCeEEEe
Confidence            999887 66666666665 888877764433333333

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.00  E-value=0.037  Score=48.49  Aligned_cols=73  Identities=22%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      ..+.++||+|+ |.+|.+.++.+...|+ +|++++++++..   +.++...++ |- .   ++..+.+.+..  ++|++|
T Consensus        17 ~~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~---~~~~~~~~~~D~-~---~~~~~~~~~~~--~iD~lv   86 (249)
T 1o5i_A           17 IRDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRYVVCDL-R---KDLDLLFEKVK--EVDILV   86 (249)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEEEECCT-T---TCHHHHHHHSC--CCSEEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHH---HhhCCeEEEeeH-H---HHHHHHHHHhc--CCCEEE
Confidence            35789999987 9999999998888899 899998886433   334422222 22 1   33444333332  799999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      ++.|.
T Consensus        87 ~~Ag~   91 (249)
T 1o5i_A           87 LNAGG   91 (249)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99873

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=95.99  E-value=0.029  Score=53.64  Aligned_cols=103  Identities=16%  Similarity=0.218  Sum_probs=71.0

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHH-HcCC--cEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGAR-LCGA--TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~-~~g~--~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      +....+|||+|+|+||..++.++. ..++  ..|++++..+.+.+..+.+|.....-.-  +..+..+.+.++..++ |+
T Consensus        10 ~~~~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~~~~~g~~~~~~~V--dadnv~~~l~aLl~~~-Dv   86 (480)
T 2ph5_A           10 ILFKNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYGVSFKLQQI--TPQNYLEVIGSTLEEN-DF   86 (480)
T ss_dssp             BCCCSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCHHHHHTCEEEECCC--CTTTHHHHTGGGCCTT-CE
T ss_pred             ecCCCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhhHHhhcCCceeEEec--cchhHHHHHHHHhcCC-CE
Confidence            455678999999999999887664 5555  2688888777666666666754321111  1244545555565554 99


Q ss_pred             EEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          276 CFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       276 vid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      |++++.....+..+-.|+..+ -.++..+.
T Consensus        87 VIN~s~~~~~l~Im~acleaG-v~YlDTa~  115 (480)
T 2ph5_A           87 LIDVSIGISSLALIILCNQKG-ALYINAAT  115 (480)
T ss_dssp             EEECCSSSCHHHHHHHHHHHT-CEEEESSC
T ss_pred             EEECCccccCHHHHHHHHHcC-CCEEECCC
Confidence            999887666577788888887 78888875

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.99  E-value=0.027  Score=50.63  Aligned_cols=78  Identities=22%  Similarity=0.222  Sum_probs=49.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-HHH----HHHcCCcEE-E--cCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEI----GKRFGVTEF-V--NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-~~~----~~~lga~~v-~--~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++ .+.    ++..+.... +  |-.+  .+.+.+.+.+... 
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~  122 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSD--EQHCKDIVQETVRQ  122 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 9999999998888999 89998887653 222    233444322 2  3332  1222222322211 


Q ss_pred             -CCccEEEEccC
Q 016507          271 -GGADYCFECVG  281 (388)
Q Consensus       271 -g~~dvvid~~g  281 (388)
                       +++|++|++.|
T Consensus       123 ~g~iD~lvnnAg  134 (291)
T 3ijr_A          123 LGSLNILVNNVA  134 (291)
T ss_dssp             HSSCCEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence             37999999876

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=95.99  E-value=0.028  Score=49.44  Aligned_cols=78  Identities=18%  Similarity=0.141  Sum_probs=50.6

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhc--CC
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      +.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+... .  .|-.+  .+.+.+.+.+..  .+
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~~g   78 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTLG   78 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHhC
Confidence            468999987 9999999998888999 8999999877654332    224321 2  23333  122333332221  24


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus        79 ~id~lv~nAg~   89 (256)
T 1geg_A           79 GFDVIVNNAGV   89 (256)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            79999999873

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=95.98  E-value=0.025  Score=50.78  Aligned_cols=73  Identities=16%  Similarity=0.152  Sum_probs=53.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.+.     ..|+||-|+..+
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~~~-----~advvi~~v~~~   68 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGF-DVTVWNRNPAKCAPLVALGARQA--------SSPAEVCA-----ACDITIAMLADP   68 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTC-CEEEECSSGGGGHHHHHHTCEEC--------SCHHHHHH-----HCSEEEECCSSH
T ss_pred             eEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHCCCeec--------CCHHHHHH-----cCCEEEEEcCCH
Confidence            68899999999998888877898 89999999999888877775321        12333332     467888888776


Q ss_pred             HHHHHHH
Q 016507          284 SLVQEAY  290 (388)
Q Consensus       284 ~~~~~~~  290 (388)
                      ..+...+
T Consensus        69 ~~~~~v~   75 (287)
T 3pdu_A           69 AAAREVC   75 (287)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4355444

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=95.97  E-value=0.022  Score=51.43  Aligned_cols=79  Identities=14%  Similarity=0.160  Sum_probs=50.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHc---CC-c-EE--EcCCCCCCc-cHHHHHHh-h
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF---GV-T-EF--VNSKNCGDK-SVSQIIID-M  268 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~l---ga-~-~v--~~~~~~~~~-~~~~~i~~-~  268 (388)
                      ..+.+|||+|+ |++|.++++.+...|+ +|+++++++++.+.+ +.+   +. . .+  .|-.+   . +..+.+.+ .
T Consensus        10 ~~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~---~~~~v~~~~~~~   85 (311)
T 3o26_A           10 TKRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTD---PIATMSSLADFI   85 (311)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTS---CHHHHHHHHHHH
T ss_pred             CCCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCC---cHHHHHHHHHHH
Confidence            35778999987 9999999988888899 999999988765432 222   21 1 12  23333   2 22222222 1


Q ss_pred             c--CCCccEEEEccCC
Q 016507          269 T--DGGADYCFECVGL  282 (388)
Q Consensus       269 ~--~g~~dvvid~~g~  282 (388)
                      .  .+++|++|++.|.
T Consensus        86 ~~~~g~iD~lv~nAg~  101 (311)
T 3o26_A           86 KTHFGKLDILVNNAGV  101 (311)
T ss_dssp             HHHHSSCCEEEECCCC
T ss_pred             HHhCCCCCEEEECCcc
Confidence            1  1379999999985

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=95.96  E-value=0.011  Score=51.73  Aligned_cols=76  Identities=8%  Similarity=-0.025  Sum_probs=51.1

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE-c--CCchHHHHHH-Hc-CCcEEEcCCCCCCccHHHHHHhhcCCCccE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-D--VISEKFEIGK-RF-GVTEFVNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~--~~~~~~~~~~-~l-ga~~v~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      +.++||+|+ |.+|.+.++.+...|+ +|+++ +  +++++.+.+. .+ +.+ +.|..+  ...+.+.+.+.. +++|+
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~r~~~~~~~~~~~~~~~~-~~~~~~--v~~~~~~~~~~~-g~iD~   75 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGY-TVVCHDASFADAAERQRFESENPGTI-ALAEQK--PERLVDATLQHG-EAIDT   75 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHSTTEE-ECCCCC--GGGHHHHHGGGS-SCEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCcCCHHHHHHHHHHhCCCc-ccCHHH--HHHHHHHHHHHc-CCCCE
Confidence            357899987 9999999998888999 89999 6  8877665443 34 332 333332  233444443322 37999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      +|++.|.
T Consensus        76 lv~~Ag~   82 (244)
T 1zmo_A           76 IVSNDYI   82 (244)
T ss_dssp             EEECCCC
T ss_pred             EEECCCc
Confidence            9999873

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=95.96  E-value=0.02  Score=51.06  Aligned_cols=77  Identities=21%  Similarity=0.135  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHH---HHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVS---QIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~---~~i~~~~  269 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++++++++.+.+.    ..+... .  .|-.+  .+...   +.+.+. 
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~-  107 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSE--AGAGTDLIERAEAI-  107 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTS--TTHHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCC--HHHHHHHHHHHHHh-
Confidence            5788999987 9999999998888899 8999999876654332    224322 1  23332  12222   233333 


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                       +++|+++++.|.
T Consensus       108 -g~iD~lvnnAg~  119 (275)
T 4imr_A          108 -APVDILVINASA  119 (275)
T ss_dssp             -SCCCEEEECCCC
T ss_pred             -CCCCEEEECCCC
Confidence             589999999884

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=95.95  E-value=0.023  Score=52.27  Aligned_cols=88  Identities=30%  Similarity=0.448  Sum_probs=65.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++ +.+..+|+..         .++.+.+.     ..|+|+.++
T Consensus       164 ~g~tvgIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g~~~---------~~l~ell~-----~aDvV~l~~  227 (335)
T 2g76_A          164 NGKTLGILGLGRIGREVATRMQSFGM-KTIGYDPIISP-EVSASFGVQQ---------LPLEEIWP-----LCDFITVHT  227 (335)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSSCH-HHHHHTTCEE---------CCHHHHGG-----GCSEEEECC
T ss_pred             CcCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcCcee---------CCHHHHHh-----cCCEEEEec
Confidence            57899999999999999999999999 99999987765 3556677642         12322221     679999888


Q ss_pred             CCHHH----H-HHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL----V-QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~----~-~~~~~~l~~~~G~~v~~g~  305 (388)
                      +....    + ...+..++++ +.++.++.
T Consensus       228 P~t~~t~~li~~~~l~~mk~g-ailIN~ar  256 (335)
T 2g76_A          228 PLLPSTTGLLNDNTFAQCKKG-VRVVNCAR  256 (335)
T ss_dssp             CCCTTTTTSBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCHHHHHhhCHHHHhhCCCC-cEEEECCC
Confidence            75421    2 3567788886 88888875

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=95.94  E-value=0.021  Score=52.24  Aligned_cols=89  Identities=17%  Similarity=0.141  Sum_probs=62.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC-CchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++ ++++ +.+..+|+.. .       .++.+.+.     ..|+|+-+
T Consensus       145 ~g~~vgIIG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~-~~~~~~g~~~-~-------~~l~ell~-----~aDvVil~  209 (320)
T 1gdh_A          145 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASS-SDEASYQATF-H-------DSLDSLLS-----VSQFFSLN  209 (320)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCH-HHHHHHTCEE-C-------SSHHHHHH-----HCSEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcCh-hhhhhcCcEE-c-------CCHHHHHh-----hCCEEEEe
Confidence            57899999999999999999999999 9999998 7765 3555667642 1       12333332     57888888


Q ss_pred             cCCHHH----H-HHHHHHhhcCCceEEEEcc
Q 016507          280 VGLASL----V-QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       280 ~g~~~~----~-~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.....    + ...+..++++ +.++.++.
T Consensus       210 ~p~~~~t~~~i~~~~l~~mk~g-ailIn~ar  239 (320)
T 1gdh_A          210 APSTPETRYFFNKATIKSLPQG-AIVVNTAR  239 (320)
T ss_dssp             CCCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             ccCchHHHhhcCHHHHhhCCCC-cEEEECCC
Confidence            774321    1 3456777876 77777764

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=95.94  E-value=0.018  Score=50.41  Aligned_cols=79  Identities=18%  Similarity=0.186  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+.    ..+... .  .|-.+  .+.+.+.+.+..  .
T Consensus        10 ~~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCC--HHHHHHHHHHHHHhc
Confidence            4678999987 9999999998888899 8999999877654322    223322 2  23222  122333232221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        87 ~~~d~vi~~Ag~   98 (255)
T 1fmc_A           87 GKVDILVNNAGG   98 (255)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=95.94  E-value=0.03  Score=49.90  Aligned_cols=79  Identities=25%  Similarity=0.307  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC------------chHHHH----HHHcCCcEE---EcCCCCCCcc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI------------SEKFEI----GKRFGVTEF---VNSKNCGDKS  260 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~------------~~~~~~----~~~lga~~v---~~~~~~~~~~  260 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++            +++.+.    ++..+....   .|-.+  .+.
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~   88 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRD--RES   88 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTC--HHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCC--HHH
Confidence            5789999987 9999999998888999 89999876            333322    223343322   23332  122


Q ss_pred             HHHHHHhhcC--CCccEEEEccCC
Q 016507          261 VSQIIIDMTD--GGADYCFECVGL  282 (388)
Q Consensus       261 ~~~~i~~~~~--g~~dvvid~~g~  282 (388)
                      +.+.+.+...  +++|++|++.|.
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~  112 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGI  112 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence            3333332211  379999999884

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=95.93  E-value=0.023  Score=50.62  Aligned_cols=79  Identities=19%  Similarity=0.270  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEEE---cCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFV---NSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v~---~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .|.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    +.+....+   |-.+  .+.+.+.+.+..  .
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTS--ESEIIEAFARLDEQG  101 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHHC
Confidence            4788999987 9999999998888999 9999999887654432    23433222   2222  122322222221  2


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|+++++.|.
T Consensus       102 g~iD~lv~nAg~  113 (271)
T 4ibo_A          102 IDVDILVNNAGI  113 (271)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999884

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.92  E-value=0.085  Score=42.25  Aligned_cols=97  Identities=5%  Similarity=-0.036  Sum_probs=60.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC-chHHHHHHH---cCCcEEEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI-SEKFEIGKR---FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~-~~~~~~~~~---lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      ...+|+|.|+|.+|...++.+...|. +|++++++ +++.+.+..   .|...+. -+.    .-.+.+.+..-.++|+|
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~~~~~~i~-gd~----~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIP-GDS----NDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEE-SCT----TSHHHHHHHTTTTCSEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhcCCCeEEE-cCC----CCHHHHHHcChhhCCEE
Confidence            34679999999999999999998998 89999987 455544432   2444332 111    11233433322389999


Q ss_pred             EEccCCHHHH---HHHHHHhhcCCceEEEEc
Q 016507          277 FECVGLASLV---QEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       277 id~~g~~~~~---~~~~~~l~~~~G~~v~~g  304 (388)
                      +-+++.+..-   ....+.+.+. .+++...
T Consensus        76 i~~~~~d~~n~~~~~~a~~~~~~-~~ii~~~  105 (153)
T 1id1_A           76 LALSDNDADNAFVVLSAKDMSSD-VKTVLAV  105 (153)
T ss_dssp             EECSSCHHHHHHHHHHHHHHTSS-SCEEEEC
T ss_pred             EEecCChHHHHHHHHHHHHHCCC-CEEEEEE
Confidence            9999987522   2233344343 5665543

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.90  E-value=0.027  Score=50.16  Aligned_cols=79  Identities=23%  Similarity=0.244  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-------H-H---HHHHcCCcE---EEcCCCCCCccHHHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------F-E---IGKRFGVTE---FVNSKNCGDKSVSQII  265 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-------~-~---~~~~lga~~---v~~~~~~~~~~~~~~i  265 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|++++++.++       . +   .++..+...   ..|-.+  .+.+.+.+
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~   81 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGA-NVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIRE--EDQVRAAV   81 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTC--HHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCC--HHHHHHHH
Confidence            4688999987 9999999998888899 89999887653       1 1   122234322   123333  12222222


Q ss_pred             HhhcC--CCccEEEEccCC
Q 016507          266 IDMTD--GGADYCFECVGL  282 (388)
Q Consensus       266 ~~~~~--g~~dvvid~~g~  282 (388)
                      .+...  |++|+++++.|.
T Consensus        82 ~~~~~~~g~iD~lvnnAG~  100 (274)
T 3e03_A           82 AATVDTFGGIDILVNNASA  100 (274)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHcCCCCEEEECCCc
Confidence            22221  379999999984

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=95.90  E-value=0.016  Score=55.76  Aligned_cols=91  Identities=20%  Similarity=0.287  Sum_probs=67.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .-.|.+|+|+|.|.+|..+++.++.+|+ +|+++++++.+...+...|+. +        .++.+.+     ...|+|+-
T Consensus       254 ~l~GktVgIIG~G~IG~~vA~~l~~~G~-~Viv~d~~~~~~~~a~~~g~~-~--------~~l~ell-----~~aDiVi~  318 (479)
T 1v8b_A          254 LISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-V--------VTLDEIV-----DKGDFFIT  318 (479)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-E--------CCHHHHT-----TTCSEEEE
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHhCcC-EEEEEeCChhhHHHHHHcCCE-e--------cCHHHHH-----hcCCEEEE
Confidence            3578999999999999999999999999 999999988765444455653 2        1233322     26899998


Q ss_pred             ccCCHHHH-HHHHHHhhcCCceEEEEcc
Q 016507          279 CVGLASLV-QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       279 ~~g~~~~~-~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.+....+ ...++.++++ ..++.+|.
T Consensus       319 ~~~t~~lI~~~~l~~MK~g-ailiNvgr  345 (479)
T 1v8b_A          319 CTGNVDVIKLEHLLKMKNN-AVVGNIGH  345 (479)
T ss_dssp             CCSSSSSBCHHHHTTCCTT-CEEEECSS
T ss_pred             CCChhhhcCHHHHhhcCCC-cEEEEeCC
Confidence            87655433 3677888887 88888886

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=95.90  E-value=0.027  Score=49.41  Aligned_cols=76  Identities=16%  Similarity=0.295  Sum_probs=50.5

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE-E--EcCCCCCCccHHHHHHhhcC--CCccEE
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--GGADYC  276 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~-v--~~~~~~~~~~~~~~i~~~~~--g~~dvv  276 (388)
                      ++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .++... .  .|-.+  .+.+.+.+.+...  +++|++
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD~l   78 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQERLQELKDELGDNLYIAQLDVRN--RAAIEEMLASLPAEWCNIDIL   78 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHTSCTTTCCCCEE
T ss_pred             EEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCceEEEEcCCCC--HHHHHHHHHHHHHhCCCCCEE
Confidence            6888887 9999999998888899 8999999887765443 344221 2  23333  1233333333322  379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.|.
T Consensus        79 vnnAg~   84 (248)
T 3asu_A           79 VNNAGL   84 (248)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            998873

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=95.90  E-value=0.021  Score=50.74  Aligned_cols=79  Identities=19%  Similarity=0.249  Sum_probs=52.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCc-E--EEcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT-E--FVNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~-~--v~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    +.+.. .  ..|-.+  .+.+.+.+.+...  
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVND--ATAVDALVESTLKEF  103 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCC--HHHHHHHHHHHHHHc
Confidence            4678999987 9999999998888899 9999999887655432    23322 1  234333  1223333322211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      ++.|++|++.|.
T Consensus       104 g~iD~lvnnAg~  115 (270)
T 3ftp_A          104 GALNVLVNNAGI  115 (270)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999873

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=95.90  E-value=0.024  Score=50.47  Aligned_cols=79  Identities=15%  Similarity=0.016  Sum_probs=50.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHHHH-Hc----CCcE-E--EcCCCCCC----ccHHHHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGK-RF----GVTE-F--VNSKNCGD----KSVSQIII  266 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~~~-~l----ga~~-v--~~~~~~~~----~~~~~~i~  266 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++ ++++.+.+. .+    +... .  .|-.+  .    +.+.+.+.
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~   86 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSL--SSSLLDCCEDIID   86 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSS--STTHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCC--ccccHHHHHHHHH
Confidence            4678999987 9999999998888899 8999988 776554332 22    4322 2  23333  2    22222222


Q ss_pred             hhc--CCCccEEEEccCC
Q 016507          267 DMT--DGGADYCFECVGL  282 (388)
Q Consensus       267 ~~~--~g~~dvvid~~g~  282 (388)
                      +..  .+++|++|++.|.
T Consensus        87 ~~~~~~g~id~lv~nAg~  104 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNASA  104 (276)
T ss_dssp             HHHHHHSCCCEEEECCCC
T ss_pred             HHHHhcCCCCEEEECCCC
Confidence            221  1379999999873

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=95.89  E-value=0.019  Score=50.25  Aligned_cols=79  Identities=23%  Similarity=0.253  Sum_probs=50.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC-chHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-SEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~-~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|++++++ +++.+.+.    ..+... +  .|-.+  .+.+.+.+.+... 
T Consensus         6 ~~k~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (258)
T 3afn_B            6 KGKRVLITGSSQGIGLATARLFARAGA-KVGLHGRKAPANIDETIASMRADGGDAAFFAADLAT--SEACQQLVDEFVAK   82 (258)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 89999887 65544322    223321 2  23332  1223333332211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        83 ~g~id~vi~~Ag~   95 (258)
T 3afn_B           83 FGGIDVLINNAGG   95 (258)
T ss_dssp             HSSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999885

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.89  E-value=0.036  Score=50.48  Aligned_cols=75  Identities=16%  Similarity=0.285  Sum_probs=55.0

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      .+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|+. +.       .+..+.+.     ..|+||.|+..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~-----~~DvVi~av~~   96 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGH-TVTVWNRTAEKCDLFIQEGAR-LG-------RTPAEVVS-----TCDITFACVSD   96 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSSGGGGHHHHHTTCE-EC-------SCHHHHHH-----HCSEEEECCSS
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHcCCE-Ec-------CCHHHHHh-----cCCEEEEeCCC
Confidence            479999999999998888888898 899999999888877776653 11       12333332     57899999986


Q ss_pred             HHHHHHHHH
Q 016507          283 ASLVQEAYA  291 (388)
Q Consensus       283 ~~~~~~~~~  291 (388)
                      +..+...+.
T Consensus        97 ~~~~~~v~~  105 (316)
T 2uyy_A           97 PKAAKDLVL  105 (316)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            654655553

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=95.88  E-value=0.028  Score=49.03  Aligned_cols=78  Identities=19%  Similarity=0.284  Sum_probs=50.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc----CCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF----GVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l----ga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      +.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+. .+    +... +  .|-.+  .+.+.+.+.+...  
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   78 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGD-RVAALDLSAETLEETARTHWHAYADKVLRVRADVAD--EGDVNAAIAATMEQF   78 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            568999987 9999999998888899 8999999887665432 22    3221 2  23322  1223333332211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        79 ~~id~li~~Ag~   90 (250)
T 2cfc_A           79 GAIDVLVNNAGI   90 (250)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.88  E-value=0.041  Score=52.09  Aligned_cols=96  Identities=15%  Similarity=0.111  Sum_probs=63.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCC--cEEEEEcCCchHHHHHH-HcC------CcE-EEcCCCCCCccHHHHHHhhcCCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGA--TRIIGVDVISEKFEIGK-RFG------VTE-FVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~--~~Vi~~~~~~~~~~~~~-~lg------a~~-v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +|+|+|+|.+|..+++.+...|.  .+|++.+++.++.+.+. .++      +.. .+|..+  .+++.+.+.+.   ++
T Consensus         3 kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d--~~~l~~~l~~~---~~   77 (405)
T 4ina_A            3 KVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADS--IEELVALINEV---KP   77 (405)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTC--HHHHHHHHHHH---CC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCC--HHHHHHHHHhh---CC
Confidence            79999999999999988877762  38999999988866543 332      222 233332  12333333332   68


Q ss_pred             cEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          274 DYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       274 dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      |+||+|++.......+..++..+ -.++.++.
T Consensus        78 DvVin~ag~~~~~~v~~a~l~~g-~~vvD~a~  108 (405)
T 4ina_A           78 QIVLNIALPYQDLTIMEACLRTG-VPYLDTAN  108 (405)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHHT-CCEEESSC
T ss_pred             CEEEECCCcccChHHHHHHHHhC-CCEEEecC
Confidence            99999998765456666777775 67776544

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=95.87  E-value=0.026  Score=49.74  Aligned_cols=79  Identities=15%  Similarity=0.184  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+... .  .|-.+  .+++.+.+.+..  .
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGK--AEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            5788999987 9999999998888899 9999999877654322    224322 1  23322  122222222221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        90 g~iD~lv~~Ag~  101 (260)
T 2zat_A           90 GGVDILVSNAAV  101 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999873

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.86  E-value=0.06  Score=46.03  Aligned_cols=75  Identities=15%  Similarity=0.042  Sum_probs=55.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +|+|.|+|.+|..+++.+...|. .|+++++++++.+.+. .++...+. -+.    .-.+.+.+..-.++|+++-+++.
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~~~~~i~-gd~----~~~~~l~~a~i~~ad~vi~~~~~   75 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKLKATIIH-GDG----SHKEILRDAEVSKNDVVVILTPR   75 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHSSSEEEE-SCT----TSHHHHHHHTCCTTCEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHcCCeEEE-cCC----CCHHHHHhcCcccCCEEEEecCC
Confidence            58999999999999999998999 8999999999887654 45665433 221    11233444322389999999998


Q ss_pred             HH
Q 016507          283 AS  284 (388)
Q Consensus       283 ~~  284 (388)
                      +.
T Consensus        76 d~   77 (218)
T 3l4b_C           76 DE   77 (218)
T ss_dssp             HH
T ss_pred             cH
Confidence            86

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=95.86  E-value=0.034  Score=50.23  Aligned_cols=34  Identities=32%  Similarity=0.316  Sum_probs=30.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .+.++||+|+ +++|.+.++.+...|+ +|++++++
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~   61 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVC   61 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            5789999987 9999999998888999 89998876

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=95.85  E-value=0.026  Score=49.33  Aligned_cols=79  Identities=22%  Similarity=0.295  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++ ++++.+.+    +..+... .  .|-.+  .+.+.+.+.+... 
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   79 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGA-NVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVAN--AEDVTNMVKQTVDV   79 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888999 8998887 66554432    2234322 2  23333  1223333332211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        80 ~g~id~lv~nAg~   92 (246)
T 2uvd_A           80 FGQVDILVNNAGV   92 (246)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999874

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=95.85  E-value=0.037  Score=49.31  Aligned_cols=71  Identities=8%  Similarity=0.055  Sum_probs=51.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCC--cEEEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGV--TEFVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga--~~v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .+.+++|+|+|.+|.+++..+...|+.+|+++.++.++.+. ++.++.  -.++..+     ++.    .   ..+|+||
T Consensus       119 ~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~-----~l~----~---~~~DivI  186 (272)
T 3pwz_A          119 RNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYE-----ALE----G---QSFDIVV  186 (272)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSG-----GGT----T---CCCSEEE
T ss_pred             cCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHH-----Hhc----c---cCCCEEE
Confidence            57899999999999999998888997799999999887654 444543  1233221     111    1   3799999


Q ss_pred             EccCCH
Q 016507          278 ECVGLA  283 (388)
Q Consensus       278 d~~g~~  283 (388)
                      +|++..
T Consensus       187 naTp~g  192 (272)
T 3pwz_A          187 NATSAS  192 (272)
T ss_dssp             ECSSGG
T ss_pred             ECCCCC
Confidence            998754

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=95.84  E-value=0.032  Score=49.79  Aligned_cols=78  Identities=15%  Similarity=0.168  Sum_probs=51.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HH----cCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KR----FGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~----lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|++++++.++.+.+ ..    .+... .  .|-.+  .+.+.+.+.+... 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           26 RDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRA--PPAVMAAVDQALKE  102 (277)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 9999999998888899 999999987664432 22    24332 2  23333  1223233322211 


Q ss_pred             -CCccEEEEccC
Q 016507          271 -GGADYCFECVG  281 (388)
Q Consensus       271 -g~~dvvid~~g  281 (388)
                       |++|+++++.|
T Consensus       103 ~g~id~lv~nAg  114 (277)
T 4fc7_A          103 FGRIDILINCAA  114 (277)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence             37999999988

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=95.83  E-value=0.035  Score=50.06  Aligned_cols=78  Identities=17%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc--------CCcE-E--EcCCCCCCccHHHHHHh
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF--------GVTE-F--VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l--------ga~~-v--~~~~~~~~~~~~~~i~~  267 (388)
                      .+.+|||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+        +... .  .|-.+  .+.+.+.+.+
T Consensus        17 ~~k~vlVTGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~   93 (303)
T 1yxm_A           17 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLVKS   93 (303)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCC--HHHHHHHHHH
Confidence            4678999987 9999999998888999 8999998877654332 11        2221 2  23332  1223333322


Q ss_pred             hcC--CCccEEEEccC
Q 016507          268 MTD--GGADYCFECVG  281 (388)
Q Consensus       268 ~~~--g~~dvvid~~g  281 (388)
                      ...  +++|++|++.|
T Consensus        94 ~~~~~g~id~li~~Ag  109 (303)
T 1yxm_A           94 TLDTFGKINFLVNNGG  109 (303)
T ss_dssp             HHHHHSCCCEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            211  37999999988

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.83  E-value=0.036  Score=49.50  Aligned_cols=34  Identities=26%  Similarity=0.187  Sum_probs=30.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~   43 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDIC   43 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEccc
Confidence            5789999987 9999999998888999 89998876

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=95.83  E-value=0.016  Score=50.31  Aligned_cols=101  Identities=18%  Similarity=0.167  Sum_probs=66.2

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHhhcC
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ....++.+||-+|.| .|..++.+++.+  +. +|++++.+++..+.+++    .|...-+....   .+..+.+.++..
T Consensus        68 ~~~~~~~~vLdiG~G-~G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~---~d~~~~l~~l~~  142 (232)
T 3cbg_A           68 ISLTGAKQVLEIGVF-RGYSALAMALQLPPDG-QIIACDQDPNATAIAKKYWQKAGVAEKISLRL---GPALATLEQLTQ  142 (232)
T ss_dssp             HHHHTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEE---SCHHHHHHHHHT
T ss_pred             HHhcCCCEEEEecCC-CCHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE---cCHHHHHHHHHh
Confidence            445677899999987 688888999876  45 99999999988877764    24421111111   233333444321


Q ss_pred             ----CCccEEEEccCC---HHHHHHHHHHhhcCCceEEEE
Q 016507          271 ----GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       271 ----g~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~  303 (388)
                          +.||+||-....   ...+..+.+.|+++ |.++.-
T Consensus       143 ~~~~~~fD~V~~d~~~~~~~~~l~~~~~~Lkpg-G~lv~~  181 (232)
T 3cbg_A          143 GKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRG-GLMVID  181 (232)
T ss_dssp             SSSCCCEEEEEECSCGGGHHHHHHHHHHTEEEE-EEEEEE
T ss_pred             cCCCCCcCEEEECCCHHHHHHHHHHHHHHcCCC-eEEEEe
Confidence                479999843332   23378888999997 888764

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=95.82  E-value=0.024  Score=50.12  Aligned_cols=79  Identities=15%  Similarity=0.189  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHH-cCCcEEEEEcCCchHHHHH-H---HcCCc-EE--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKFEIG-K---RFGVT-EF--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~-~g~~~Vi~~~~~~~~~~~~-~---~lga~-~v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.+|||+|+ |.+|..+++.+.. .|+ +|++++++.++.+.+ +   ..+.. .+  .|-.+  .+.+.+.+.+... 
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD--LQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCC--HHHHHHHHHHHHHh
Confidence            4678999987 9999998887777 899 899999887655432 2   22322 22  23332  1223333332211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        80 ~g~id~li~~Ag~   92 (276)
T 1wma_A           80 YGGLDVLVNNAGI   92 (276)
T ss_dssp             HSSEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence             379999999873

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=95.82  E-value=0.034  Score=49.77  Aligned_cols=79  Identities=23%  Similarity=0.315  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHHHH-H---c-CCcEE-E--cCCCCCCccHHHHHHhhc-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIGK-R---F-GVTEF-V--NSKNCGDKSVSQIIIDMT-  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~~~-~---l-ga~~v-~--~~~~~~~~~~~~~i~~~~-  269 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++ ++++.+.+. .   . +.... +  |-.+  .+.+.+.+.+.. 
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  100 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGA-NIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTK--PSEIADMMAMVAD  100 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCC--HHHHHHHHHHHHH
Confidence            4678999987 9999999998888999 8999988 444433322 2   2 32222 2  3222  122333232221 


Q ss_pred             -CCCccEEEEccCC
Q 016507          270 -DGGADYCFECVGL  282 (388)
Q Consensus       270 -~g~~dvvid~~g~  282 (388)
                       .|++|+++++.|.
T Consensus       101 ~~g~iD~lv~nAg~  114 (281)
T 3v2h_A          101 RFGGADILVNNAGV  114 (281)
T ss_dssp             HTSSCSEEEECCCC
T ss_pred             HCCCCCEEEECCCC
Confidence             2379999999884

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=95.82  E-value=0.042  Score=48.17  Aligned_cols=80  Identities=15%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch--HHHHHHHc--CCc-EE--EcCCCCCC-ccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRF--GVT-EF--VNSKNCGD-KSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~--~~~~~~~l--ga~-~v--~~~~~~~~-~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.++++.+...|++.|++++++++  ..+.+.+.  +.. .+  .|-.+  . +.+.+.+.+... 
T Consensus         4 ~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   81 (254)
T 1sby_A            4 TNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTV--PVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS--CHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCC--ChHHHHHHHHHHHHh
Confidence            4678999987 999999999888889944888888763  33333332  222 12  23332  1 223333332211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        82 ~g~id~lv~~Ag~   94 (254)
T 1sby_A           82 LKTVDILINGAGI   94 (254)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence             379999999873

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=95.81  E-value=0.026  Score=46.79  Aligned_cols=99  Identities=15%  Similarity=0.184  Sum_probs=65.6

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc--EEEcCCCCCCccHHHHHHhhc
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~--~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      ...++++++||=+|.|. |..+..+++. +. +|++++.+++..+.+++    .+.+  .++. .+  ..    .+..+.
T Consensus        17 ~~~~~~~~~vLDiGcG~-G~~~~~la~~-~~-~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~-~~--~~----~l~~~~   86 (185)
T 3mti_A           17 AEVLDDESIVVDATMGN-GNDTAFLAGL-SK-KVYAFDVQEQALGKTSQRLSDLGIENTELIL-DG--HE----NLDHYV   86 (185)
T ss_dssp             HTTCCTTCEEEESCCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHHTCCCEEEEE-SC--GG----GGGGTC
T ss_pred             HHhCCCCCEEEEEcCCC-CHHHHHHHHh-CC-EEEEEECCHHHHHHHHHHHHHcCCCcEEEEe-Cc--HH----HHHhhc
Confidence            45678899999998765 7777888877 66 99999999988777654    3432  2332 22  01    122233


Q ss_pred             CCCccEEEEccCC-----------H----HHHHHHHHHhhcCCceEEEEcc
Q 016507          270 DGGADYCFECVGL-----------A----SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       270 ~g~~dvvid~~g~-----------~----~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .+.||+|+-..+.           .    ..+..+.+.|+++ |.++.+..
T Consensus        87 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~  136 (185)
T 3mti_A           87 REPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVG-GRLAIMIY  136 (185)
T ss_dssp             CSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             cCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCC-cEEEEEEe
Confidence            3479999765321           1    2357888999997 99887643

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.048  Score=52.54  Aligned_cols=93  Identities=10%  Similarity=0.132  Sum_probs=60.2

Q ss_pred             CCEEEEEccchhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHH-cCCcE-EEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FGVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~-lga~~-v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      +.+|+|+|+|.+|.+++..+... ++ +|++++++.++.+.+.+ .++.. .+|..+  ..++.+.+    . ++|+||+
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~~g~-~V~v~~R~~~ka~~la~~~~~~~~~~D~~d--~~~l~~~l----~-~~DvVIn   94 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAANDDI-NVTVACRTLANAQALAKPSGSKAISLDVTD--DSALDKVL----A-DNDVVIS   94 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTSTTE-EEEEEESSHHHHHHHHGGGTCEEEECCTTC--HHHHHHHH----H-TSSEEEE
T ss_pred             CCEEEEECChHHHHHHHHHHHhCCCC-eEEEEECCHHHHHHHHHhcCCcEEEEecCC--HHHHHHHH----c-CCCEEEE
Confidence            56899999999999988888776 66 89999999887665543 34432 233332  11222222    1 7999999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      |++..........++..+ -.++..
T Consensus        95 ~tp~~~~~~v~~a~l~~g-~~vvd~  118 (467)
T 2axq_A           95 LIPYTFHPNVVKSAIRTK-TDVVTS  118 (467)
T ss_dssp             CSCGGGHHHHHHHHHHHT-CEEEEC
T ss_pred             CCchhhhHHHHHHHHhcC-CEEEEe
Confidence            998764333445566664 555543

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=95.80  E-value=0.03  Score=49.40  Aligned_cols=79  Identities=14%  Similarity=0.138  Sum_probs=50.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE-cCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++ .+++++.+.+.    ..+... .  .|-.+  .+.+.+.+.+... 
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~-~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   79 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGY-NIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQ--PAKIKEMFQQIDET   79 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5678999987 9999999999888999 77776 77776554332    234332 2  23332  1223322322211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        80 ~g~id~lv~nAg~   92 (258)
T 3oid_A           80 FGRLDVFVNNAAS   92 (258)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999873

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.80  E-value=0.082  Score=48.57  Aligned_cols=74  Identities=20%  Similarity=0.221  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch----HHHHHHHc-------CCcEE-EcCCCCCCccHHHHHHh
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE----KFEIGKRF-------GVTEF-VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~----~~~~~~~l-------ga~~v-~~~~~~~~~~~~~~i~~  267 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|++++++..    ..+.+..+       ++..+ .|-.+      .+.+.+
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d------~~~~~~   96 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQ-VVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRD------LTTCEQ   96 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTC------HHHHHH
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCC------HHHHHH
Confidence            3679999997 9999999999888898 8999988543    22223221       22222 22222      233444


Q ss_pred             hcCCCccEEEEccCC
Q 016507          268 MTDGGADYCFECVGL  282 (388)
Q Consensus       268 ~~~g~~dvvid~~g~  282 (388)
                      ... ++|+||++.+.
T Consensus        97 ~~~-~~d~Vih~A~~  110 (351)
T 3ruf_A           97 VMK-GVDHVLHQAAL  110 (351)
T ss_dssp             HTT-TCSEEEECCCC
T ss_pred             Hhc-CCCEEEECCcc
Confidence            333 89999999985

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.79  E-value=0.033  Score=48.40  Aligned_cols=73  Identities=16%  Similarity=0.008  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .+.+|||+|+ |.+|...++.+...  |+ +|+++++++++.+.+ ..++..+ .|..+   .   +.+.+... ++|+|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~-~V~~~~r~~~~~~~~-~~~~~~~~~D~~d---~---~~~~~~~~-~~d~v   73 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKF-VAKGLVRSAQGKEKI-GGEADVFIGDITD---A---DSINPAFQ-GIDAL   73 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTC-EEEEEESCHHHHHHT-TCCTTEEECCTTS---H---HHHHHHHT-TCSEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCc-EEEEEEcCCCchhhc-CCCeeEEEecCCC---H---HHHHHHHc-CCCEE
Confidence            4578999997 99999999988877  78 999999987765433 1123322 23222   2   23333332 68999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.+.
T Consensus        74 i~~a~~   79 (253)
T 1xq6_A           74 VILTSA   79 (253)
T ss_dssp             EECCCC
T ss_pred             EEeccc
Confidence            998873

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.79  E-value=0.045  Score=50.09  Aligned_cols=129  Identities=15%  Similarity=0.198  Sum_probs=76.5

Q ss_pred             EEEEEccchhHHHH-HHHHHHcCCcEEE-EEcCCchHHHH-HHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGLGSIGLAV-AEGARLCGATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Gag~vG~~a-i~la~~~g~~~Vi-~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|.|+|+|.+|... +..++..++ +++ +.++++++.+. .+++|...++       .++.+.+.+   ..+|+|+.|+
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~-~~vav~d~~~~~~~~~~~~~g~~~~~-------~~~~~~l~~---~~~D~V~i~t   70 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGG-EVVSMMSTSAERGAAYATENGIGKSV-------TSVEELVGD---PDVDAVYVST   70 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTC-EEEEEECSCHHHHHHHHHHTTCSCCB-------SCHHHHHTC---TTCCEEEECS
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCC-eEEEEECCCHHHHHHHHHHcCCCccc-------CCHHHHhcC---CCCCEEEEeC
Confidence            58899999999876 543333777 555 56777776654 4556754222       233333321   2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------HH-hcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------VL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      ......+.+..++..  |+-+.+.     +++..+...      +. .+++.+.-...  +.....++.+.+++.+|.+
T Consensus        71 p~~~h~~~~~~al~~--Gk~v~~e-----kP~~~~~~~~~~l~~~a~~~g~~~~~~~~--~r~~p~~~~~~~~i~~g~i  140 (332)
T 2glx_A           71 TNELHREQTLAAIRA--GKHVLCE-----KPLAMTLEDAREMVVAAREAGVVLGTNHH--LRNAAAHRAMRDAIAEGRI  140 (332)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEEC-----SSSCSSHHHHHHHHHHHHHHTCCEEECCC--GGGSHHHHHHHHHHHTTTT
T ss_pred             ChhHhHHHHHHHHHC--CCeEEEe-----CCCcCCHHHHHHHHHHHHHcCCEEEEeeh--hhcCHHHHHHHHHHHcCCC
Confidence            988767788888876  5544443     233333322      11 23444432211  1123457788888888854

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.78  E-value=0.023  Score=47.02  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=68.2

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCC-c--EEEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-T--EFVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga-~--~v~~~~~~~~~~~~~~i  265 (388)
                      +.....+.++.+||-+|+|. |..+..+++.. . +|++++.+++..+.+++    .+. +  .++.      .++.+.+
T Consensus        25 ~~~~~~~~~~~~vldiG~G~-G~~~~~l~~~~-~-~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~------~d~~~~~   95 (192)
T 1l3i_A           25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGRV-R-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME------GDAPEAL   95 (192)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTTS-S-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE------SCHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhc-C-EEEEEECCHHHHHHHHHHHHHcCCCcceEEEe------cCHHHhc
Confidence            44556788999999999876 88888888766 4 99999999988877765    343 1  1222      2333322


Q ss_pred             HhhcCCCccEEEEccCC---HHHHHHHHHHhhcCCceEEEEc
Q 016507          266 IDMTDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ...  +.||+|+.....   ...+..+.+.|+++ |.++...
T Consensus        96 ~~~--~~~D~v~~~~~~~~~~~~l~~~~~~l~~g-G~l~~~~  134 (192)
T 1l3i_A           96 CKI--PDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (192)
T ss_dssp             TTS--CCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             ccC--CCCCEEEECCchHHHHHHHHHHHHhcCCC-cEEEEEe
Confidence            221  379999965441   34477888889997 8887654

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=95.78  E-value=0.025  Score=50.57  Aligned_cols=79  Identities=22%  Similarity=0.308  Sum_probs=51.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCC---cE-E--EcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV---TE-F--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga---~~-v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    +.+.   .. .  .|-.+  .+++.+.+.+..
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   86 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITN--EDETARAVDAVT   86 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCC--HHHHHHHHHHHH
Confidence            4789999987 9999999998888899 8999999887654332    2332   11 1  23332  122333333222


Q ss_pred             C--CCccEEEEccCC
Q 016507          270 D--GGADYCFECVGL  282 (388)
Q Consensus       270 ~--g~~dvvid~~g~  282 (388)
                      .  |++|+++++.|.
T Consensus        87 ~~~g~id~lv~nAg~  101 (281)
T 3svt_A           87 AWHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHcCCCCEEEECCCc
Confidence            1  379999999885

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=95.75  E-value=0.056  Score=49.00  Aligned_cols=89  Identities=16%  Similarity=0.054  Sum_probs=63.0

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      ..+|.|+|.|.+|...++.+...|+ +|++.++++++.+.+.+.|+...        .+..+.+.     ..|+||-|+.
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~e~~~-----~aDvVi~~vp   74 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQGK-RVAIWNRSPGKAAALVAAGAHLC--------ESVKAALS-----ASPATIFVLL   74 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTCEEC--------SSHHHHHH-----HSSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHCCCeec--------CCHHHHHh-----cCCEEEEEeC
Confidence            3579999999999999988888898 89999999999888877776321        22333332     4789999998


Q ss_pred             CHHHHHHHH-----HHhhcCCceEEEEcc
Q 016507          282 LASLVQEAY-----ACCRKGWGKTIVLGV  305 (388)
Q Consensus       282 ~~~~~~~~~-----~~l~~~~G~~v~~g~  305 (388)
                      .+..+...+     ..+.++ ..++.++.
T Consensus        75 ~~~~~~~v~~~~~l~~~~~g-~ivid~st  102 (306)
T 3l6d_A           75 DNHATHEVLGMPGVARALAH-RTIVDYTT  102 (306)
T ss_dssp             SHHHHHHHHTSTTHHHHTTT-CEEEECCC
T ss_pred             CHHHHHHHhcccchhhccCC-CEEEECCC
Confidence            775444433     334454 55555543

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=95.75  E-value=0.024  Score=50.78  Aligned_cols=76  Identities=18%  Similarity=0.230  Sum_probs=49.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE--E--EcCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE--F--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~--v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      .+.+|||+|+ |.+|.++++.+...|+ +|+++++++++.+.+.    ..+...  +  .|-.+  .+.+.+.+.+..  
T Consensus        27 ~~k~vlITGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~  103 (286)
T 1xu9_A           27 QGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMED--MTFAEQFVAQAGKL  103 (286)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 8999999887765432    234321  2  23332  122222222221  


Q ss_pred             CCCccEEEEc
Q 016507          270 DGGADYCFEC  279 (388)
Q Consensus       270 ~g~~dvvid~  279 (388)
                      .+++|++|++
T Consensus       104 ~g~iD~li~n  113 (286)
T 1xu9_A          104 MGGLDMLILN  113 (286)
T ss_dssp             HTSCSEEEEC
T ss_pred             cCCCCEEEEC
Confidence            1379999998

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=95.75  E-value=0.05  Score=48.39  Aligned_cols=91  Identities=11%  Similarity=0.096  Sum_probs=60.9

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      +...+.++||+|+|.+|.+++..+...|+.+|+++.++.+|.+ +++.++.+  ++. +   ..         ...+|+|
T Consensus       115 ~~~~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~--~~~-~---~~---------~~~~Div  179 (271)
T 1npy_A          115 HLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYA--YIN-S---LE---------NQQADIL  179 (271)
T ss_dssp             TCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCE--EES-C---CT---------TCCCSEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCc--cch-h---hh---------cccCCEE
Confidence            4446779999999999999999888899878999999987754 44556642  111 1   00         0279999


Q ss_pred             EEccCCHHHH-------HHHHHHhhcCCceEEEEc
Q 016507          277 FECVGLASLV-------QEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       277 id~~g~~~~~-------~~~~~~l~~~~G~~v~~g  304 (388)
                      |+|++.....       ......+.++ ..++.+-
T Consensus       180 InaTp~gm~~~~~~~~~~~~~~~l~~~-~~v~Dlv  213 (271)
T 1npy_A          180 VNVTSIGMKGGKEEMDLAFPKAFIDNA-SVAFDVV  213 (271)
T ss_dssp             EECSSTTCTTSTTTTSCSSCHHHHHHC-SEEEECC
T ss_pred             EECCCCCccCccccCCCCCCHHHcCCC-CEEEEee
Confidence            9999864311       1113456664 5566554

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=95.75  E-value=0.03  Score=49.66  Aligned_cols=79  Identities=23%  Similarity=0.344  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCC--c-EE--EcCCCCCCccHHHHHHhhc--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGV--T-EF--VNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga--~-~v--~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+ ..++.  . .+  .|-.+  .+.+.+.+.+..  .+
T Consensus        15 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           15 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCC--HHHHHHHHHHHHHHcC
Confidence            4678999987 9999999998888899 899998887665433 33332  1 12  23332  122333332221  13


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus        92 ~id~li~~Ag~  102 (278)
T 2bgk_A           92 KLDIMFGNVGV  102 (278)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            79999998873

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=95.74  E-value=0.022  Score=50.25  Aligned_cols=79  Identities=14%  Similarity=0.230  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcC---CcEEEEEcCCchHHHHHHHc---CCc-EE--EcCCCCCCccHHHHHHhh--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCG---ATRIIGVDVISEKFEIGKRF---GVT-EF--VNSKNCGDKSVSQIIIDM--  268 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g---~~~Vi~~~~~~~~~~~~~~l---ga~-~v--~~~~~~~~~~~~~~i~~~--  268 (388)
                      .+.+|||+|+ |.+|..+++.+...|   + +|+++++++++.+.++++   +.. .+  .|-.+  .+.+.+.+.+.  
T Consensus        20 ~~k~vlITGasggIG~~la~~L~~~G~~~~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   96 (267)
T 1sny_A           20 HMNSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIEG   96 (267)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHHH
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHhcCCCCc-EEEEEecChhhhHHHHHhhccCCceEEEEecCCC--hHHHHHHHHHHHH
Confidence            4678999987 999999999888888   7 999999887655444332   222 12  23333  23333333322  


Q ss_pred             -cCC-CccEEEEccCC
Q 016507          269 -TDG-GADYCFECVGL  282 (388)
Q Consensus       269 -~~g-~~dvvid~~g~  282 (388)
                       .+. ++|++|++.|.
T Consensus        97 ~~g~~~id~li~~Ag~  112 (267)
T 1sny_A           97 VTKDQGLNVLFNNAGI  112 (267)
T ss_dssp             HHGGGCCSEEEECCCC
T ss_pred             hcCCCCccEEEECCCc
Confidence             222 69999999873

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=95.74  E-value=0.038  Score=48.62  Aligned_cols=78  Identities=18%  Similarity=0.216  Sum_probs=49.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH--HHH-HHHc---CCcE-E--EcCCCCCCccHHHHHHhhc--
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEI-GKRF---GVTE-F--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~--~~~-~~~l---ga~~-v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      +.++||+|+ |.+|.+.++.+...|+ +|+++++++++  .+. .+.+   +... .  .|-.+  .+.+.+.+.+..  
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   78 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGF-DIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTD--KANFDSAIDEAAEK   78 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            568999987 9999999988888899 89999888766  332 2222   3322 2  23333  122322232221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      -+++|++|++.|.
T Consensus        79 ~g~iD~lv~nAg~   91 (258)
T 3a28_C           79 LGGFDVLVNNAGI   91 (258)
T ss_dssp             HTCCCEEEECCCC
T ss_pred             hCCCCEEEECCCC
Confidence            1379999999874

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=95.73  E-value=0.024  Score=49.86  Aligned_cols=79  Identities=20%  Similarity=0.215  Sum_probs=49.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHHH----HHcCCcE-EE--cCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.+|||+|+ |.+|.+.++.+...|+ +|+++++ ++++.+.+    +..+... ++  |-.+  .+.+.+.+.+... 
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   82 (261)
T 1gee_A            6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV--ESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 8999988 66554332    2223322 22  3322  1223333332211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        83 ~g~id~li~~Ag~   95 (261)
T 1gee_A           83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999873

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=95.72  E-value=0.03  Score=50.11  Aligned_cols=79  Identities=14%  Similarity=0.200  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+.    ..+... .  .|-.+  .+.+.+.+.+..  .
T Consensus        43 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d--~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           43 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH  119 (285)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCC--HHHHHHHHHHHHHhc
Confidence            3678999987 9999999988888898 8988888776654332    224332 2  23333  122333332221  2


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus       120 ~~id~li~~Ag~  131 (285)
T 2c07_A          120 KNVDILVNNAGI  131 (285)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999874

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=95.71  E-value=0.02  Score=50.97  Aligned_cols=77  Identities=19%  Similarity=0.264  Sum_probs=49.2

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhcC--CCcc
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGAD  274 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~~--g~~d  274 (388)
                      ...+.+|||+|+ |++|.+.++.+...|+ +|+++++++++..-    .+.. ..|-.+  .+.+.+.+.+...  |++|
T Consensus        11 ~~~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~----~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iD   83 (269)
T 3vtz_A           11 EFTDKVAIVTGGSSGIGLAVVDALVRYGA-KVVSVSLDEKSDVN----VSDHFKIDVTN--EEEVKEAVEKTTKKYGRID   83 (269)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCC--CTT----SSEEEECCTTC--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhccC----ceeEEEecCCC--HHHHHHHHHHHHHHcCCCC
Confidence            456889999987 9999999998888899 89999887765421    1111 233333  1223333322221  3799


Q ss_pred             EEEEccCC
Q 016507          275 YCFECVGL  282 (388)
Q Consensus       275 vvid~~g~  282 (388)
                      ++|++.|.
T Consensus        84 ~lv~nAg~   91 (269)
T 3vtz_A           84 ILVNNAGI   91 (269)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99999874

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.71  E-value=0.026  Score=50.23  Aligned_cols=95  Identities=19%  Similarity=0.288  Sum_probs=65.6

Q ss_pred             ccccchhhhhHHHHHHhcCC-CCCCEEEEEccc-hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTANV-EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~-~~~~~VlI~Gag-~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  257 (388)
                      ..+||+...+...+ +...+ -.|.+++|+|.| .+|..+++++...|+ .|+++.+.                   .  
T Consensus       139 ~~~PcTp~gv~~lL-~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t--  195 (285)
T 3l07_A          139 CLESCTPKGIMTML-REYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKA-TVTTCHRF-------------------T--  195 (285)
T ss_dssp             CCCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C--
T ss_pred             CCCCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC-------------------c--
Confidence            34566655555534 33333 478999999985 589999999999999 88877532                   1  


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       .++.+.++     .+|+||.++|.+..+.  -+.++++ ..++.+|..
T Consensus       196 -~~L~~~~~-----~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~  235 (285)
T 3l07_A          196 -TDLKSHTT-----KADILIVAVGKPNFIT--ADMVKEG-AVVIDVGIN  235 (285)
T ss_dssp             -SSHHHHHT-----TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCE
T ss_pred             -hhHHHhcc-----cCCEEEECCCCCCCCC--HHHcCCC-cEEEEeccc
Confidence             23444432     6899999999875332  2456886 788888864

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=95.71  E-value=0.027  Score=49.77  Aligned_cols=79  Identities=24%  Similarity=0.362  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-c-hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc---C-Cc-EE--EcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-G-SIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---G-VT-EF--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g-~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l---g-a~-~v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.++||+|+ | ++|.+.++.+...|+ +|+++++++++.+.+. .+   + .. .+  .|-.+  .+.+.+.+.+...
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~   97 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTS--TEAVDALITQTVE   97 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCC--HHHHHHHHHHHHH
Confidence            5789999997 6 799999998888899 8999999887655433 22   2 11 12  23333  1223333322211


Q ss_pred             --CCccEEEEccCC
Q 016507          271 --GGADYCFECVGL  282 (388)
Q Consensus       271 --g~~dvvid~~g~  282 (388)
                        +++|++|++.|.
T Consensus        98 ~~g~id~li~~Ag~  111 (266)
T 3o38_A           98 KAGRLDVLVNNAGL  111 (266)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HhCCCcEEEECCCc
Confidence              379999999884

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=95.70  E-value=0.027  Score=49.57  Aligned_cols=77  Identities=19%  Similarity=0.332  Sum_probs=47.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-E--EcCCCCCCccHHHHHHhhc-CCCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-F--VNSKNCGDKSVSQIIIDMT-DGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v--~~~~~~~~~~~~~~i~~~~-~g~~dv  275 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++..++  ..+.++... .  .|-.+  .+++.+.+.... .++.|+
T Consensus         8 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~--~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~g~id~   82 (257)
T 3tl3_A            8 RDAVAVVTGGASGLGLATTKRLLDAGA-QVVVLDIRGED--VVADLGDRARFAAADVTD--EAAVASALDLAETMGTLRI   82 (257)
T ss_dssp             --CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCHH--HHHHTCTTEEEEECCTTC--HHHHHHHHHHHHHHSCEEE
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCchHH--HHHhcCCceEEEECCCCC--HHHHHHHHHHHHHhCCCCE
Confidence            4678999987 9999999988888899 89999875443  334444332 1  23333  122222221111 248999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      ++++.|.
T Consensus        83 lv~nAg~   89 (257)
T 3tl3_A           83 VVNCAGT   89 (257)
T ss_dssp             EEECGGG
T ss_pred             EEECCCC
Confidence            9999984

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.70  E-value=0.021  Score=50.99  Aligned_cols=79  Identities=25%  Similarity=0.249  Sum_probs=51.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc---CC---c-EE--EcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF---GV---T-EF--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l---ga---~-~v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+   +.   . ..  .|-.+  .+.+.+.+.+..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   81 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT--EDGQDQIINSTL   81 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCC--HHHHHHHHHHHH
Confidence            4678999987 9999999998888899 8999999887665432 22   22   2 12  23333  122322232221


Q ss_pred             C--CCccEEEEccCC
Q 016507          270 D--GGADYCFECVGL  282 (388)
Q Consensus       270 ~--g~~dvvid~~g~  282 (388)
                      .  +++|++|++.|.
T Consensus        82 ~~~g~iD~lv~nAg~   96 (280)
T 1xkq_A           82 KQFGKIDVLVNNAGA   96 (280)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HhcCCCCEEEECCCC
Confidence            1  379999999873

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.70  E-value=0.017  Score=49.82  Aligned_cols=101  Identities=14%  Similarity=0.182  Sum_probs=69.3

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC----cEEEcCCCCCCccHHHHHHhh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----TEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga----~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      +.....+.++++||-+|.|. |..+..+++.. . +|++++.+++..+.+++...    -.++..+      ..+.+.  
T Consensus        62 ~~~~~~~~~~~~vLdiG~G~-G~~~~~l~~~~-~-~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d------~~~~~~--  130 (231)
T 1vbf_A           62 MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGD------GTLGYE--  130 (231)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESC------GGGCCG--
T ss_pred             HHHhcCCCCCCEEEEEcCCC-CHHHHHHHHHc-C-EEEEEeCCHHHHHHHHHHHhhcCCeEEEECC------cccccc--
Confidence            45666788999999999876 88888888764 5 99999999998888776421    1222211      111010  


Q ss_pred             cCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          269 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       269 ~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ..+.||+|+...........+.+.|+++ |.++..-.
T Consensus       131 ~~~~fD~v~~~~~~~~~~~~~~~~L~pg-G~l~~~~~  166 (231)
T 1vbf_A          131 EEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPIG  166 (231)
T ss_dssp             GGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEEC
T ss_pred             cCCCccEEEECCcHHHHHHHHHHHcCCC-cEEEEEEc
Confidence            1237999987765544356788999997 98887643

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=95.69  E-value=0.066  Score=48.22  Aligned_cols=87  Identities=16%  Similarity=0.301  Sum_probs=59.3

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      -+|.|+|+|.+|...+..+...|. +|++.++++++.+.+.+.|+. +.       .+..+.+.     ..|+||-|++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~-~~-------~~~~~~~~-----~~D~vi~~vp~   70 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGV-TVYAFDLMEANVAAVVAQGAQ-AC-------ENNQKVAA-----ASDIIFTSLPN   70 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHTTTCE-EC-------SSHHHHHH-----HCSEEEECCSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCe-ec-------CCHHHHHh-----CCCEEEEECCC
Confidence            479999999999998888877898 899999998888777665643 11       12333332     57899999876


Q ss_pred             HHHHHHHH-------HHhhcCCceEEEEc
Q 016507          283 ASLVQEAY-------ACCRKGWGKTIVLG  304 (388)
Q Consensus       283 ~~~~~~~~-------~~l~~~~G~~v~~g  304 (388)
                      +..+...+       ..+.++ ..++.+.
T Consensus        71 ~~~~~~v~~~~~~l~~~l~~~-~~vv~~~   98 (301)
T 3cky_A           71 AGIVETVMNGPGGVLSACKAG-TVIVDMS   98 (301)
T ss_dssp             HHHHHHHHHSTTCHHHHSCTT-CEEEECC
T ss_pred             HHHHHHHHcCcchHhhcCCCC-CEEEECC
Confidence            65454444       345554 4455443

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=95.69  E-value=0.041  Score=49.23  Aligned_cols=34  Identities=29%  Similarity=0.322  Sum_probs=30.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .+.++||+|+ +.+|.+.++.+...|+ +|++++++
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~   44 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDIC   44 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEecc
Confidence            5789999987 9999999998888999 89998776

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.69  E-value=0.029  Score=51.25  Aligned_cols=82  Identities=23%  Similarity=0.271  Sum_probs=50.1

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC----------chHHH----HHHHcCCcEEEcCCCCC-CccHHH
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI----------SEKFE----IGKRFGVTEFVNSKNCG-DKSVSQ  263 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~----------~~~~~----~~~~lga~~v~~~~~~~-~~~~~~  263 (388)
                      -.+.++||+|+ |++|.+.++.+...|+ +|++++++          .++.+    .+...+....+..-+.. .+.+.+
T Consensus        25 l~gk~vlVTGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           25 VDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHH
Confidence            35788999987 9999999998888899 99999876          33332    22333443322222211 122222


Q ss_pred             HHHhhcC--CCccEEEEccCC
Q 016507          264 IIIDMTD--GGADYCFECVGL  282 (388)
Q Consensus       264 ~i~~~~~--g~~dvvid~~g~  282 (388)
                      .+.+...  |++|++|++.|.
T Consensus       104 ~~~~~~~~~g~iD~lv~nAg~  124 (322)
T 3qlj_A          104 LIQTAVETFGGLDVLVNNAGI  124 (322)
T ss_dssp             HHHHHHHHHSCCCEEECCCCC
T ss_pred             HHHHHHHHcCCCCEEEECCCC
Confidence            2222211  379999999884

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.68  E-value=0.04  Score=49.47  Aligned_cols=36  Identities=28%  Similarity=0.412  Sum_probs=32.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .+.+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        35 ~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           35 RTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             GGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             hCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            457999999999999999999999999999998765

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.68  E-value=0.028  Score=50.11  Aligned_cols=95  Identities=15%  Similarity=0.084  Sum_probs=61.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +|||+|+ |.+|...++.+...  |+ +|+++++++++.+.+...++..+ .|..+      .+.+.+... ++|+||++
T Consensus         2 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~D~~d------~~~l~~~~~-~~d~vi~~   73 (287)
T 2jl1_A            2 SIAVTGATGQLGGLVIQHLLKKVPAS-QIIAIVRNVEKASTLADQGVEVRHGDYNQ------PESLQKAFA-GVSKLLFI   73 (287)
T ss_dssp             CEEETTTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTTHHHHHTTCEEEECCTTC------HHHHHHHTT-TCSEEEEC
T ss_pred             eEEEEcCCchHHHHHHHHHHHhCCCC-eEEEEEcCHHHHhHHhhcCCeEEEeccCC------HHHHHHHHh-cCCEEEEc
Confidence            5899997 99999999888776  88 89999988777665554455433 23322      223433333 69999999


Q ss_pred             cCCH-------HHHHHHHHHhhcC-CceEEEEccC
Q 016507          280 VGLA-------SLVQEAYACCRKG-WGKTIVLGVD  306 (388)
Q Consensus       280 ~g~~-------~~~~~~~~~l~~~-~G~~v~~g~~  306 (388)
                      .+..       ......++.+... -++++.++..
T Consensus        74 a~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~  108 (287)
T 2jl1_A           74 SGPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA  108 (287)
T ss_dssp             CCCCSCHHHHHHHHHHHHHHHHHTTCSEEEEEEET
T ss_pred             CCCCcCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            8741       1234455555443 1378877753

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.67  E-value=0.082  Score=48.90  Aligned_cols=129  Identities=13%  Similarity=0.135  Sum_probs=81.1

Q ss_pred             CEEEEEccchhHHHHHHHHHHc--CCcEEE-EEcCCchHHHH-HHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          203 STVVIFGLGSIGLAVAEGARLC--GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~--g~~~Vi-~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      -+|.|+|.|.+|...+..++..  ++ +++ +.++++++.+. ++++|+ .++       .++.+.+.+   ..+|+|+.
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~~~~~~~-~~~-------~~~~~ll~~---~~~D~V~i   81 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRA-ELIDVCDIDPAALKAAVERTGA-RGH-------ASLTDMLAQ---TDADIVIL   81 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHHCC-EEE-------SCHHHHHHH---CCCSEEEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCe-EEEEEEcCCHHHHHHHHHHcCC-cee-------CCHHHHhcC---CCCCEEEE
Confidence            3799999999998877766655  67 555 66777777554 556786 343       234444433   27999999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------H-HhcCcEEEEeeecCCCccCcHHHHHHHHhCCC
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  351 (388)
                      |+......+.+..++..  |+-+.+.     +++..+...      . -.++..+.-...  +.....++.+.+++.+|.
T Consensus        82 ~tp~~~h~~~~~~al~~--gk~v~~E-----KP~a~~~~~~~~l~~~a~~~g~~~~v~~~--~r~~p~~~~~k~~i~~g~  152 (354)
T 3q2i_A           82 TTPSGLHPTQSIECSEA--GFHVMTE-----KPMATRWEDGLEMVKAADKAKKHLFVVKQ--NRRNATLQLLKRAMQEKR  152 (354)
T ss_dssp             CSCGGGHHHHHHHHHHT--TCEEEEC-----SSSCSSHHHHHHHHHHHHHHTCCEEECCG--GGGSHHHHHHHHHHHTTT
T ss_pred             CCCcHHHHHHHHHHHHC--CCCEEEe-----CCCcCCHHHHHHHHHHHHHhCCeEEEEEc--ccCCHHHHHHHHHHhcCC
Confidence            99988778888888887  4555553     333343332      1 123444432211  222346788888898885


Q ss_pred             C
Q 016507          352 L  352 (388)
Q Consensus       352 ~  352 (388)
                      +
T Consensus       153 i  153 (354)
T 3q2i_A          153 F  153 (354)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.66  E-value=0.027  Score=50.10  Aligned_cols=95  Identities=12%  Similarity=0.088  Sum_probs=59.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +|||+|+ |.+|...++.+...  |+ +|+++++++++.+.+...++..+ .|..+   .   +.+.+... ++|+||++
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~d---~---~~~~~~~~-~~d~vi~~   72 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPAS-QIVAIVRNPAKAQALAAQGITVRQADYGD---E---AALTSALQ-GVEKLLLI   72 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGG-GEEEEESCTTTCHHHHHTTCEEEECCTTC---H---HHHHHHTT-TCSEEEEC
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCc-eEEEEEcChHhhhhhhcCCCeEEEcCCCC---H---HHHHHHHh-CCCEEEEe
Confidence            4899997 99999999888776  88 89999888776655554455433 23322   2   23333332 68999999


Q ss_pred             cCCH-----HHHHHHHHHhhcC-CceEEEEccC
Q 016507          280 VGLA-----SLVQEAYACCRKG-WGKTIVLGVD  306 (388)
Q Consensus       280 ~g~~-----~~~~~~~~~l~~~-~G~~v~~g~~  306 (388)
                      .+..     ......++.+... -++++.++..
T Consensus        73 a~~~~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~  105 (286)
T 2zcu_A           73 SSSEVGQRAPQHRNVINAAKAAGVKFIAYTSLL  105 (286)
T ss_dssp             C--------CHHHHHHHHHHHHTCCEEEEEEET
T ss_pred             CCCCchHHHHHHHHHHHHHHHcCCCEEEEECCC
Confidence            8752     1234444444432 1478877753

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.66  E-value=0.028  Score=50.32  Aligned_cols=95  Identities=15%  Similarity=0.253  Sum_probs=65.9

Q ss_pred             ccccchhhhhHHHHHHhcCC-CCCCEEEEEccc-hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTANV-EVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~-~~~~~VlI~Gag-~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  257 (388)
                      ..+||+....... .+..++ -.|.+|+|+|+| .+|.-+++++...|+ +|+++.+.                   .  
T Consensus       143 ~~~PcTp~gi~~l-l~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~-------------------t--  199 (301)
T 1a4i_A          143 CFIPCTPKGCLEL-IKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSK-------------------T--  199 (301)
T ss_dssp             CCCCHHHHHHHHH-HHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C--
T ss_pred             CccCchHHHHHHH-HHHcCCCCCCCEEEEECCCchHHHHHHHHHHhCCC-eEEEEECC-------------------c--
Confidence            3466655544443 333343 478999999997 589999999999999 88887532                   1  


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       .++.+.++     .+|+||-++|.+..+.  -+.++++ ..++.+|..
T Consensus       200 -~~L~~~~~-----~ADIVI~Avg~p~~I~--~~~vk~G-avVIDVgi~  239 (301)
T 1a4i_A          200 -AHLDEEVN-----KGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN  239 (301)
T ss_dssp             -SSHHHHHT-----TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred             -ccHHHHhc-----cCCEEEECCCCcccCC--HHHcCCC-cEEEEccCC
Confidence             34544443     6899999999875222  2346786 888999874

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.65  E-value=0.016  Score=53.18  Aligned_cols=88  Identities=24%  Similarity=0.338  Sum_probs=59.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+.+....+|+..         .++.+.+.     ..|+|+-++
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~---------~~l~ell~-----~aDvV~l~~  208 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGA-TLQYHEAKALDTQTEQRLGLRQ---------VACSELFA-----SSDFILLAL  208 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCC-EEEEECSSCCCHHHHHHHTEEE---------CCHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEECCCCCcHhHHHhcCcee---------CCHHHHHh-----hCCEEEEcC
Confidence            47899999999999999999999999 9999998875556666666531         12222222     356776666


Q ss_pred             CCHH----H-HHHHHHHhhcCCceEEEEc
Q 016507          281 GLAS----L-VQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       281 g~~~----~-~~~~~~~l~~~~G~~v~~g  304 (388)
                      ....    . -...+..++++ ..++.++
T Consensus       209 P~t~~t~~li~~~~l~~mk~g-ailIN~a  236 (330)
T 4e5n_A          209 PLNADTLHLVNAELLALVRPG-ALLVNPC  236 (330)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-EEEEECS
T ss_pred             CCCHHHHHHhCHHHHhhCCCC-cEEEECC
Confidence            5321    0 13555666665 6666665

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=95.65  E-value=0.033  Score=49.19  Aligned_cols=78  Identities=17%  Similarity=0.155  Sum_probs=48.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH---HHHH----HHcCCcEE---EcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK---FEIG----KRFGVTEF---VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~---~~~~----~~lga~~v---~~~~~~~~~~~~~~i~~~~  269 (388)
                      .+.++||+|+ +++|.+.++.+...|+ +|+++++....   .+.+    +..+....   .|-.+  .+.+.+.+.+..
T Consensus        10 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~   86 (262)
T 3ksu_A           10 KNKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSN--EEEVAKLFDFAE   86 (262)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCS--HHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHH
Confidence            5788999987 9999999998888899 88887665432   2222    12233221   23332  122322232221


Q ss_pred             C--CCccEEEEccC
Q 016507          270 D--GGADYCFECVG  281 (388)
Q Consensus       270 ~--g~~dvvid~~g  281 (388)
                      .  ++.|+++++.|
T Consensus        87 ~~~g~iD~lvnnAg  100 (262)
T 3ksu_A           87 KEFGKVDIAINTVG  100 (262)
T ss_dssp             HHHCSEEEEEECCC
T ss_pred             HHcCCCCEEEECCC
Confidence            1  37999999988

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.65  E-value=0.11  Score=45.68  Aligned_cols=35  Identities=29%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +.+|+|+|+|++|..+++.+...|+.++..+|.+.
T Consensus        28 ~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           28 DSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             cCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            57999999999999999999999998999886643

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.64  E-value=0.023  Score=50.61  Aligned_cols=79  Identities=19%  Similarity=0.199  Sum_probs=50.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc------CCc-EE--EcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF------GVT-EF--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l------ga~-~v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+      +.. ..  .|-.+  .+.+.+.+.+..
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~   81 (278)
T 1spx_A            5 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT--DAGQDEILSTTL   81 (278)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCC--HHHHHHHHHHHH
Confidence            4678999987 9999999998888899 8999999887665432 22      111 12  23333  122333332221


Q ss_pred             C--CCccEEEEccCC
Q 016507          270 D--GGADYCFECVGL  282 (388)
Q Consensus       270 ~--g~~dvvid~~g~  282 (388)
                      .  |++|++|++.|.
T Consensus        82 ~~~g~id~lv~~Ag~   96 (278)
T 1spx_A           82 GKFGKLDILVNNAGA   96 (278)
T ss_dssp             HHHSCCCEEEECCC-
T ss_pred             HHcCCCCEEEECCCC
Confidence            1  379999999874

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=95.64  E-value=0.036  Score=49.70  Aligned_cols=95  Identities=17%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             cccchhhhhHHHHHHhcCCCCCCEEEEEccc-hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCc
Q 016507          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDK  259 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag-~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~  259 (388)
                      .+||+...+...+.+..---.|.+++|+|.| .+|..+++++...|+ .|+++.+...                      
T Consensus       144 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~~~~T~----------------------  200 (300)
T 4a26_A          144 FTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKENA-TVTIVHSGTS----------------------  200 (300)
T ss_dssp             CCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTSC----------------------
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCCC----------------------
Confidence            4566666555544333334589999999985 589999999999999 8888865222                      


Q ss_pred             cHH--HHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          260 SVS--QIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       260 ~~~--~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ++.  +.++     .+|+||.++|.+..+..  .+++++ ..++.+|..
T Consensus       201 ~l~l~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~  241 (300)
T 4a26_A          201 TEDMIDYLR-----TADIVIAAMGQPGYVKG--EWIKEG-AAVVDVGTT  241 (300)
T ss_dssp             HHHHHHHHH-----TCSEEEECSCCTTCBCG--GGSCTT-CEEEECCCE
T ss_pred             Cchhhhhhc-----cCCEEEECCCCCCCCcH--HhcCCC-cEEEEEecc
Confidence            222  2222     68999999998753322  456886 888888864

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=95.64  E-value=0.048  Score=48.62  Aligned_cols=81  Identities=21%  Similarity=0.286  Sum_probs=51.0

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-------------CchHHHHH----HHcCCcEE---EcCCCCC
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-------------ISEKFEIG----KRFGVTEF---VNSKNCG  257 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-------------~~~~~~~~----~~lga~~v---~~~~~~~  257 (388)
                      --.+.++||+|+ |.+|.+.++.+...|+ +|+++++             ++++.+.+    +..+....   .|-.+  
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--   88 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRD--   88 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC--
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCC--
Confidence            346789999987 9999999998888999 8999887             44444332    22343322   23333  


Q ss_pred             CccHHHHHHhhc--CCCccEEEEccCC
Q 016507          258 DKSVSQIIIDMT--DGGADYCFECVGL  282 (388)
Q Consensus       258 ~~~~~~~i~~~~--~g~~dvvid~~g~  282 (388)
                      .+.+.+.+.+..  .+++|+++++.|.
T Consensus        89 ~~~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           89 DAALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence            122332222221  1379999999874

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.63  E-value=0.049  Score=50.19  Aligned_cols=91  Identities=11%  Similarity=0.100  Sum_probs=63.4

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      .+|.|+|.|.+|...+..++..|. +|++.++++++.+.+.++|+...        .++.+.+.+. ..+.|+||-|+..
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~-~V~~~dr~~~~~~~a~~~G~~~~--------~~~~e~~~~a-~~~aDlVilavP~   78 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANH-SVFGYNRSRSGAKSAVDEGFDVS--------ADLEATLQRA-AAEDALIVLAVPM   78 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHTTCCEE--------SCHHHHHHHH-HHTTCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCeee--------CCHHHHHHhc-ccCCCEEEEeCCH
Confidence            579999999999999999998898 89999999999998888887432        1233333321 0157999999986


Q ss_pred             HHHHHHHHHH---hhcCCceEEEEcc
Q 016507          283 ASLVQEAYAC---CRKGWGKTIVLGV  305 (388)
Q Consensus       283 ~~~~~~~~~~---l~~~~G~~v~~g~  305 (388)
                      .. +...++.   ++++ ..++.++.
T Consensus        79 ~~-~~~vl~~l~~~~~~-~iv~Dv~S  102 (341)
T 3ktd_A           79 TA-IDSLLDAVHTHAPN-NGFTDVVS  102 (341)
T ss_dssp             HH-HHHHHHHHHHHCTT-CCEEECCS
T ss_pred             HH-HHHHHHHHHccCCC-CEEEEcCC
Confidence            53 4333332   3444 45555654

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.62  E-value=0.027  Score=50.07  Aligned_cols=94  Identities=19%  Similarity=0.245  Sum_probs=65.1

Q ss_pred             cccchhhhhHHHHHHhcC-CCCCCEEEEEccc-hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCC
Q 016507          181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~-~~~~~~VlI~Gag-~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  258 (388)
                      .+||+...+...+ +... --.|.+++|+|.| .+|..+++++...|+ .|+++.+..                      
T Consensus       139 ~~PcTp~gv~~lL-~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gA-tVtv~h~~t----------------------  194 (285)
T 3p2o_A          139 FLPCTPLGVMKLL-KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGA-TVSVCHIKT----------------------  194 (285)
T ss_dssp             CCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC----------------------
T ss_pred             CCCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCc----------------------
Confidence            4566555555533 3333 3489999999985 589999999999999 888876421                      


Q ss_pred             ccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          259 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       259 ~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .++.+.++     .+|+||.++|.+..+.  -+.++++ ..++.+|..
T Consensus       195 ~~L~~~~~-----~ADIVI~Avg~p~~I~--~~~vk~G-avVIDVgi~  234 (285)
T 3p2o_A          195 KDLSLYTR-----QADLIIVAAGCVNLLR--SDMVKEG-VIVVDVGIN  234 (285)
T ss_dssp             SCHHHHHT-----TCSEEEECSSCTTCBC--GGGSCTT-EEEEECCCE
T ss_pred             hhHHHHhh-----cCCEEEECCCCCCcCC--HHHcCCC-eEEEEeccC
Confidence            23444432     6899999999875332  2456886 788888864

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.62  E-value=0.029  Score=50.69  Aligned_cols=78  Identities=23%  Similarity=0.242  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCC---c-EE--EcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV---T-EF--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga---~-~v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.    ..+.   . .+  .|-.+  .+.+.+.+.+..
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~  101 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE--ASGQDDIINTTL  101 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCC--HHHHHHHHHHHH
Confidence            4678999987 9999999998888899 8999999887655432    2232   2 12  23333  122333332221


Q ss_pred             --CCCccEEEEccC
Q 016507          270 --DGGADYCFECVG  281 (388)
Q Consensus       270 --~g~~dvvid~~g  281 (388)
                        .+++|++|++.|
T Consensus       102 ~~~g~iD~lvnnAG  115 (297)
T 1xhl_A          102 AKFGKIDILVNNAG  115 (297)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HhcCCCCEEEECCC
Confidence              137999999887

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=95.62  E-value=0.053  Score=48.64  Aligned_cols=80  Identities=20%  Similarity=0.196  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCC--cEEEEEcCCchHHHHHHH-c-----CCcE-E--EcCCCCCCccHHHHHHhh
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGA--TRIIGVDVISEKFEIGKR-F-----GVTE-F--VNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~--~~Vi~~~~~~~~~~~~~~-l-----ga~~-v--~~~~~~~~~~~~~~i~~~  268 (388)
                      .+.++||+|+ |++|.+.++.+...|+  .+|+.+++++++.+.+.+ +     +... .  .|-.+  .+.+.+.+.+.
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~  109 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ--AEKIKPFIENL  109 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTC--GGGHHHHHHTS
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCC--HHHHHHHHHHH
Confidence            4689999987 9999998776655454  289999998877655432 2     3222 2  23333  23444444443


Q ss_pred             cC--CCccEEEEccCC
Q 016507          269 TD--GGADYCFECVGL  282 (388)
Q Consensus       269 ~~--g~~dvvid~~g~  282 (388)
                      ..  |++|++|++.|.
T Consensus       110 ~~~~g~iD~lVnnAG~  125 (287)
T 3rku_A          110 PQEFKDIDILVNNAGK  125 (287)
T ss_dssp             CGGGCSCCEEEECCCC
T ss_pred             HHhcCCCCEEEECCCc
Confidence            32  379999999873

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=95.60  E-value=0.033  Score=49.62  Aligned_cols=77  Identities=16%  Similarity=0.177  Sum_probs=50.7

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCC--c-EE--EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV--T-EF--VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga--~-~v--~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      .++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+. .+..  . ..  .|-.+  .+.+.+.+.+...  +++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGW-SLVLTGRREERLQALAGELSAKTRVLPLTLDVRD--RAAMSAAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCC--HHHHHHHHHHHHHHhCCC
Confidence            68999987 9999999998888999 8999999887765443 2321  1 12  23333  1233333333222  378


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |++|++.|.
T Consensus        99 D~lvnnAG~  107 (272)
T 2nwq_A           99 RGLINNAGL  107 (272)
T ss_dssp             CEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999874

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=95.59  E-value=0.058  Score=48.18  Aligned_cols=80  Identities=18%  Similarity=0.218  Sum_probs=50.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhcC
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ..+.++||+|+ |.+|.+.++.+...|+ +|+++++ ++++.+.+    ...+... .  .|-.+  .+.+.+.+.+...
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~  103 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLAD--LSSHQATVDAVVA  103 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTS--GGGHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHH
Confidence            35788999987 9999999998888999 8888875 55443322    2334332 2  23333  2333333333222


Q ss_pred             --CCccEEEEccCC
Q 016507          271 --GGADYCFECVGL  282 (388)
Q Consensus       271 --g~~dvvid~~g~  282 (388)
                        +++|++|++.|.
T Consensus       104 ~~g~iD~lvnnAg~  117 (280)
T 4da9_A          104 EFGRIDCLVNNAGI  117 (280)
T ss_dssp             HHSCCCEEEEECC-
T ss_pred             HcCCCCEEEECCCc
Confidence              379999999886

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=95.59  E-value=0.033  Score=48.81  Aligned_cols=96  Identities=13%  Similarity=0.159  Sum_probs=62.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcC--CCccEEEE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCFE  278 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~--g~~dvvid  278 (388)
                      +.+|||+|+ |.+|.+.++.+...|+ +|+++++++++.+.     ....++-.+  .+++.+.+.+...  +++|++|+
T Consensus        22 ~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~d~~d--~~~v~~~~~~~~~~~g~iD~li~   93 (251)
T 3orf_A           22 SKNILVLGGSGALGAEVVKFFKSKSW-NTISIDFRENPNAD-----HSFTIKDSG--EEEIKSVIEKINSKSIKVDTFVC   93 (251)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCTTSS-----EEEECSCSS--HHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----cceEEEeCC--HHHHHHHHHHHHHHcCCCCEEEE
Confidence            678999987 9999999998888999 89999988765321     111222222  1334333433322  37999999


Q ss_pred             ccCCH--------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          279 CVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       279 ~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +.|..                          ...+.++..+..+ |+++.++..
T Consensus        94 ~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-g~iv~isS~  146 (251)
T 3orf_A           94 AAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQG-GLFVLTGAS  146 (251)
T ss_dssp             CCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred             CCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccC-CEEEEEech
Confidence            98830                          0123344555565 899998764

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.57  E-value=0.04  Score=47.95  Aligned_cols=79  Identities=24%  Similarity=0.327  Sum_probs=48.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE-cCCchHHHHH----HHcCCcE-EE--cCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTE-FV--NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~~~~~~~~~~----~~lga~~-v~--~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++ .+++++.+.+    +..+... .+  |-.+  .+.+.+.+.+... 
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~-~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   80 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGA-NIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKN--PEDVENMVKTAMDA   80 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTS--HHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHh
Confidence            4678999987 9999999998888899 88888 5665544332    2234322 22  3322  1223333322211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        81 ~~~~d~vi~~Ag~   93 (247)
T 2hq1_A           81 FGRIDILVNNAGI   93 (247)
T ss_dssp             HSCCCEEEECC--
T ss_pred             cCCCCEEEECCCC
Confidence             379999999874

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=95.57  E-value=0.038  Score=50.38  Aligned_cols=35  Identities=26%  Similarity=0.268  Sum_probs=30.3

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      -.+.++||+|+ |.+|.++++.+...|+ +|++++++
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~   79 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLC   79 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence            35789999987 9999999998888999 89988765

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=95.57  E-value=0.045  Score=48.36  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=49.8

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHcCCcEEEEEcCCch---HHHHHH-HcCCcEEE--cCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGK-RFGVTEFV--NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga---g~vG~~ai~la~~~g~~~Vi~~~~~~~---~~~~~~-~lga~~v~--~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+   |.+|.++++.+...|+ +|+++++++.   ..+.+. ..+...++  |-.+  .+.+.+.+.+... 
T Consensus         8 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   84 (265)
T 1qsg_A            8 SGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAE--DASIDTMFAELGKV   84 (265)
T ss_dssp             TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4678999985   6999999998888899 8999988762   222222 22322233  3333  1233333333322 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        85 ~g~iD~lv~~Ag~   97 (265)
T 1qsg_A           85 WPKFDGFVHSIGF   97 (265)
T ss_dssp             CSSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999873

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=95.57  E-value=0.069  Score=49.21  Aligned_cols=129  Identities=19%  Similarity=0.292  Sum_probs=80.3

Q ss_pred             EEEEEccchhHHHHHHHHHH-cCCcEEE-EEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGLGSIGLAVAEGARL-CGATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~-~g~~~Vi-~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|.|+|.|.+|...+..++. -++ +++ +.++++++.+ +++.+|...+++       ++.+.+.+   ..+|+|+.|+
T Consensus         4 rvgiIG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~~~-------~~~~ll~~---~~~D~V~i~t   72 (344)
T 3ezy_A            4 RIGVIGLGRIGTIHAENLKMIDDA-ILYAISDVREDRLREMKEKLGVEKAYK-------DPHELIED---PNVDAVLVCS   72 (344)
T ss_dssp             EEEEECCSHHHHHHHHHGGGSTTE-EEEEEECSCHHHHHHHHHHHTCSEEES-------SHHHHHHC---TTCCEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHhCCCceeC-------CHHHHhcC---CCCCEEEEcC
Confidence            68999999999887666654 366 555 5577777755 455678765542       34443332   2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------H-HhcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      ......+.+..++..  |+-+.+.     +++..+...      + -.+++.+.-...  +.....++.+.+++.+|.+
T Consensus        73 p~~~h~~~~~~al~~--gk~v~~E-----KP~~~~~~e~~~l~~~a~~~g~~~~v~~~--~R~~p~~~~~k~~i~~G~i  142 (344)
T 3ezy_A           73 STNTHSELVIACAKA--KKHVFCE-----KPLSLNLADVDRMIEETKKADVILFTGFN--RRFDRNFKKLKEAVENGTI  142 (344)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEEE-----SCSCSCHHHHHHHHHHHHHHTCCEEEECG--GGGCHHHHHHHHHHHTTTT
T ss_pred             CCcchHHHHHHHHhc--CCeEEEE-----CCCCCCHHHHHHHHHHHHHhCCcEEEeec--ccCCHHHHHHHHHHHcCCC
Confidence            988778888888887  4444453     233333332      1 123444332222  2223567888889988855

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=95.57  E-value=0.014  Score=51.21  Aligned_cols=94  Identities=20%  Similarity=0.348  Sum_probs=56.7

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      .++||+|+ |.+|.++++.+...|+ +|+++++++++.+.  .+.    .|-.+  .+.+.+.+.++ .+++|++|++.|
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~--~~~----~Dl~~--~~~v~~~~~~~-~~~id~lv~~Ag   71 (257)
T 1fjh_A            2 SIIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDAEVIA--DLS----TAEGR--KQAIADVLAKC-SKGMDGLVLCAG   71 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSSSEEC--CTT----SHHHH--HHHHHHHHTTC-TTCCSEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCchhhcc--ccc----cCCCC--HHHHHHHHHHh-CCCCCEEEECCC
Confidence            36899987 9999999998888899 89999887654321  011    11111  01122222222 247899999987


Q ss_pred             CHH------------------HHHHHHHHhhc-CCceEEEEccC
Q 016507          282 LAS------------------LVQEAYACCRK-GWGKTIVLGVD  306 (388)
Q Consensus       282 ~~~------------------~~~~~~~~l~~-~~G~~v~~g~~  306 (388)
                      ...                  ..+.++..+.. +.|+++.++..
T Consensus        72 ~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~  115 (257)
T 1fjh_A           72 LGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSV  115 (257)
T ss_dssp             CCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCG
T ss_pred             CCCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECCh
Confidence            532                  12344444433 12789988764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.56  E-value=0.04  Score=48.86  Aligned_cols=79  Identities=19%  Similarity=0.291  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-hHHHH----HHHcCCcE-EE--cCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEI----GKRFGVTE-FV--NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~~----~~~lga~~-v~--~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.+|||+|+ |.+|.+.++.+...|+ +|++++++. +..+.    ++..+... ++  |-.+  .+.+.+.+.+... 
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~  104 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGYKAAVIKFDAAS--ESDFIEAIQTIVQS  104 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCC--HHHHHHHHHHHHHh
Confidence            5788999987 9999999988888899 899888844 33332    22334332 22  2222  1233333333221 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus       105 ~g~id~li~nAg~  117 (271)
T 4iin_A          105 DGGLSYLVNNAGV  117 (271)
T ss_dssp             HSSCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             379999999884

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=95.55  E-value=0.034  Score=49.39  Aligned_cols=79  Identities=15%  Similarity=0.184  Sum_probs=49.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++ ++++.+.+    +..+... .  .|-.+  .+.+.+.+.+... 
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d--~~~v~~~~~~~~~~  103 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGA-KVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQ--ESEVEALFAAVIER  103 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888999 8888777 44443332    2334332 2  23332  1223222322211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       |++|++|++.|.
T Consensus       104 ~g~id~lv~nAg~  116 (269)
T 4dmm_A          104 WGRLDVLVNNAGI  116 (269)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999874

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=95.55  E-value=0.026  Score=49.50  Aligned_cols=75  Identities=20%  Similarity=0.310  Sum_probs=49.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhc--CCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMT--DGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~--~g~~dvv  276 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++++.    +..++.. ..|-.+  .+.+.+.+.+..  .+++|++
T Consensus         6 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~----~~~~~~~~~~D~~d--~~~~~~~~~~~~~~~g~id~l   78 (250)
T 2fwm_X            6 SGKNVWVTGAGKGIGYATALAFVEAGA-KVTGFDQAFTQ----EQYPFATEVMDVAD--AAQVAQVCQRLLAETERLDAL   78 (250)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCCCS----SCCSSEEEECCTTC--HHHHHHHHHHHHHHCSCCCEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCchhh----hcCCceEEEcCCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4678999987 9999999999888999 89999887653    2234322 223333  122333333221  2379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.|.
T Consensus        79 v~~Ag~   84 (250)
T 2fwm_X           79 VNAAGI   84 (250)
T ss_dssp             EECCCC
T ss_pred             EECCCc
Confidence            999874

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.55  E-value=0.059  Score=48.51  Aligned_cols=81  Identities=19%  Similarity=0.163  Sum_probs=49.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch--HHHH----HHHcCCcEEEcCCCCCCcc-HHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEI----GKRFGVTEFVNSKNCGDKS-VSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~--~~~~----~~~lga~~v~~~~~~~~~~-~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++.+  +.+.    ++..+....+-.-+..+.+ +.+.+.+...  
T Consensus        48 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  126 (294)
T 3r3s_A           48 KDRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREAL  126 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            5789999987 9999999998888999 8988877632  2222    2334543322221211122 2222222211  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|+++++.|.
T Consensus       127 g~iD~lv~nAg~  138 (294)
T 3r3s_A          127 GGLDILALVAGK  138 (294)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998874

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=95.54  E-value=0.093  Score=46.93  Aligned_cols=41  Identities=20%  Similarity=0.444  Sum_probs=36.2

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      .+|.|+|+|.+|...++.+...|+ +|++.++++++.+.+.+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~   45 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKK   45 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH
Confidence            589999999999999999999999 99999999988776554

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=95.54  E-value=0.092  Score=48.55  Aligned_cols=129  Identities=12%  Similarity=0.108  Sum_probs=80.6

Q ss_pred             CEEEEEccchhHH-HHHHHHHHc-CCcEEE-EEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          203 STVVIFGLGSIGL-AVAEGARLC-GATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       203 ~~VlI~Gag~vG~-~ai~la~~~-g~~~Vi-~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      -+|.|+|.|.+|. ..+..++.. ++ +++ +.++++++.+ +++++|+..+        .++.+.+.+   ..+|+|+.
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g~~~~--------~~~~~ll~~---~~~D~V~i   95 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLT-EVTAIASRRWDRAKRFTERFGGEPV--------EGYPALLER---DDVDAVYV   95 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTE-EEEEEEESSHHHHHHHHHHHCSEEE--------ESHHHHHTC---TTCSEEEE
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCe-EEEEEEcCCHHHHHHHHHHcCCCCc--------CCHHHHhcC---CCCCEEEE
Confidence            3799999999998 556655554 67 555 5567766655 4556787643        123333321   27999999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------H-HhcCcEEEEeeecCCCccCcHHHHHHHHhCCC
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  351 (388)
                      |+......+.+..++..  |+-|.+.     +++..+...      . -.+++.+.-...  +.....++.+.+++.+|.
T Consensus        96 ~tp~~~h~~~~~~al~a--Gk~Vl~E-----KP~a~~~~ea~~l~~~a~~~g~~~~v~~~--~R~~p~~~~~k~~i~~G~  166 (350)
T 3rc1_A           96 PLPAVLHAEWIDRALRA--GKHVLAE-----KPLTTDRPQAERLFAVARERGLLLMENFM--FLHHPQHRQVADMLDEGV  166 (350)
T ss_dssp             CCCGGGHHHHHHHHHHT--TCEEEEE-----SSSCSSHHHHHHHHHHHHHTTCCEEEECG--GGGCTHHHHHHHHHHTTT
T ss_pred             CCCcHHHHHHHHHHHHC--CCcEEEe-----CCCCCCHHHHHHHHHHHHHhCCEEEEEec--ccCCHHHHHHHHHHhcCC
Confidence            99988878888888887  4545553     333344332      1 233444432221  222456888888999886


Q ss_pred             C
Q 016507          352 L  352 (388)
Q Consensus       352 ~  352 (388)
                      +
T Consensus       167 i  167 (350)
T 3rc1_A          167 I  167 (350)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=95.52  E-value=0.03  Score=52.06  Aligned_cols=48  Identities=23%  Similarity=0.285  Sum_probs=41.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHHHcCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVT  248 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~lga~  248 (388)
                      -.|.+|+|.|.|.+|..+++.+...|+ +|++++++.++.+ ++++++++
T Consensus       171 L~GktV~V~G~G~VG~~~A~~L~~~Ga-kVvv~D~~~~~l~~~a~~~ga~  219 (364)
T 1leh_A          171 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD  219 (364)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCcCEEEEECchHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHcCCE
Confidence            478999999999999999999999999 8999999888766 45556664

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=95.52  E-value=0.083  Score=46.22  Aligned_cols=98  Identities=17%  Similarity=0.271  Sum_probs=64.9

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHHHh
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i~~  267 (388)
                      ....++.+||-+|.|. |..++.+++.+  +. +|++++.+++..+.+++    .|..   .++.      .+..+.+..
T Consensus        75 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~------gda~~~l~~  146 (247)
T 1sui_A           75 LKLINAKNTMEIGVYT-GYSLLATALAIPEDG-KILAMDINKENYELGLPVIKKAGVDHKIDFRE------GPALPVLDE  146 (247)
T ss_dssp             HHHTTCCEEEEECCGG-GHHHHHHHHHSCTTC-EEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE------SCHHHHHHH
T ss_pred             HHhhCcCEEEEeCCCc-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCCeEEEE------CCHHHHHHH
Confidence            3456778999998754 77777888876  55 99999999988877764    3442   1222      223333333


Q ss_pred             hc-----CCCccEEEEccCC---HHHHHHHHHHhhcCCceEEEE
Q 016507          268 MT-----DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       268 ~~-----~g~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      +.     .+.||+||--...   ...+..+.+.|+++ |.++.-
T Consensus       147 l~~~~~~~~~fD~V~~d~~~~~~~~~l~~~~~~LkpG-G~lv~d  189 (247)
T 1sui_A          147 MIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYD  189 (247)
T ss_dssp             HHHSGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEE
T ss_pred             HHhccCCCCCEEEEEEcCchHHHHHHHHHHHHhCCCC-eEEEEe
Confidence            31     3479999753322   24477889999997 988754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=95.51  E-value=0.017  Score=49.93  Aligned_cols=102  Identities=12%  Similarity=0.161  Sum_probs=67.2

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC--cE--EEcCCCCCCccHHHHHHhhcC
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--TE--FVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga--~~--v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ....+.++++||-+|+|. |..+..+++..+..+|++++.+++..+.+++.-.  +.  .+..+-   ...... ... .
T Consensus        68 ~~~~~~~~~~VLDlGcG~-G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~---~~~~~~-~~~-~  141 (230)
T 1fbn_A           68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQEY-ANI-V  141 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGGGG-TTT-S
T ss_pred             cccCCCCCCEEEEEcccC-CHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCC---CCcccc-ccc-C
Confidence            345577899999999876 8888889988764499999999987776654311  11  121111   110000 011 1


Q ss_pred             CCccEEEEccCCH---H-HHHHHHHHhhcCCceEEEE
Q 016507          271 GGADYCFECVGLA---S-LVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       271 g~~dvvid~~g~~---~-~~~~~~~~l~~~~G~~v~~  303 (388)
                      +.||+|+.....+   . .+..+.+.|+++ |.++..
T Consensus       142 ~~~D~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  177 (230)
T 1fbn_A          142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA  177 (230)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ccEEEEEEecCChhHHHHHHHHHHHhCCCC-cEEEEE
Confidence            3799999765544   3 377888899997 998875

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=95.51  E-value=0.027  Score=51.46  Aligned_cols=78  Identities=9%  Similarity=0.011  Sum_probs=47.6

Q ss_pred             CCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH--HHHHHHc----CCcEE-EcCCCCCCccHHHHHHhhc
Q 016507          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRF----GVTEF-VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       198 ~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~--~~~~~~l----ga~~v-~~~~~~~~~~~~~~i~~~~  269 (388)
                      ..+++.+|||+|+ |.+|..+++.+...|+ +|+++++++++  .+.+..+    ++..+ .|-.+   .   +.+.+..
T Consensus        10 ~~~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~---~~~~~~~   82 (335)
T 1rpn_A           10 HGSMTRSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMAD---A---CSVQRAV   82 (335)
T ss_dssp             -----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTC---H---HHHHHHH
T ss_pred             ccccCCeEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCCccccccchhhccccCceEEEECCCCC---H---HHHHHHH
Confidence            3567899999987 9999999998888898 89999887653  1223222    22222 22222   2   2233333


Q ss_pred             CC-CccEEEEccCC
Q 016507          270 DG-GADYCFECVGL  282 (388)
Q Consensus       270 ~g-~~dvvid~~g~  282 (388)
                      .+ ++|+||++.+.
T Consensus        83 ~~~~~d~Vih~A~~   96 (335)
T 1rpn_A           83 IKAQPQEVYNLAAQ   96 (335)
T ss_dssp             HHHCCSEEEECCSC
T ss_pred             HHcCCCEEEECccc
Confidence            33 68999999874

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=95.50  E-value=0.046  Score=49.10  Aligned_cols=40  Identities=15%  Similarity=0.136  Sum_probs=33.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEc-CCchHHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEI  241 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~-~~~~~~~~  241 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++ +++++.+.
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~r~~~~~~~   49 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANA   49 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEcCCCHHHHHH
Confidence            4678999987 9999999998888999 899998 88766543

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=95.50  E-value=0.033  Score=48.34  Aligned_cols=77  Identities=22%  Similarity=0.175  Sum_probs=48.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEE-cCCchHHHHHH----HcCCcE-E-E--cCCCCCCccHHHHHHhhc--C
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIGK----RFGVTE-F-V--NSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~~~~~~~~~~~----~lga~~-v-~--~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+|||+|+ |.+|...++.+...|+ +|+++ ++++++.+.+.    ..+... . +  |-.+  .+.+.+.+.+..  -
T Consensus         2 k~vlITGasggiG~~~a~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   78 (245)
T 2ph3_A            2 RKALITGASRGIGRAIALRLAEDGF-ALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLE--AEAATALVHQAAEVL   78 (245)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCC--HHHHHHHHHHHHHhc
Confidence            57899987 9999999998888899 88887 77776654332    223321 2 2  3332  122322222221  1


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        79 ~~~d~li~~Ag~   90 (245)
T 2ph3_A           79 GGLDTLVNNAGI   90 (245)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999999873

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.49  E-value=0.013  Score=51.09  Aligned_cols=97  Identities=13%  Similarity=0.137  Sum_probs=66.0

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC----cE-EEcCCCCCCccHHHHHHhhcCCCc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----TE-FVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga----~~-v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      ..+|.+||-+|.|. |..+..+++..+. +|++++.+++-.+.+++...    .. ++.      .+..+.+..+..+.|
T Consensus        58 ~~~G~rVLdiG~G~-G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~------~~a~~~~~~~~~~~F  129 (236)
T 3orh_A           58 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLK------GLWEDVAPTLPDGHF  129 (236)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEE------SCHHHHGGGSCTTCE
T ss_pred             ccCCCeEEEECCCc-cHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEe------ehHHhhcccccccCC
Confidence            57899999999864 7778888877666 89999999998888876432    21 222      223333333433479


Q ss_pred             cEE-EEccCC----------HHHHHHHHHHhhcCCceEEEEc
Q 016507          274 DYC-FECVGL----------ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       274 dvv-id~~g~----------~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      |.| +|++..          ...+.++.+.|++| |+++.+.
T Consensus       130 D~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPG-G~l~f~~  170 (236)
T 3orh_A          130 DGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYCN  170 (236)
T ss_dssp             EEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEECC
T ss_pred             ceEEEeeeecccchhhhcchhhhhhhhhheeCCC-CEEEEEe
Confidence            988 565432          12356788999998 9998763

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=95.48  E-value=0.041  Score=49.33  Aligned_cols=39  Identities=26%  Similarity=0.182  Sum_probs=32.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-hHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE  240 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~  240 (388)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++ ++.+
T Consensus        22 ~~k~~lVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~   62 (288)
T 2x9g_A           22 EAPAAVVTGAAKRIGRAIAVKLHQTGY-RVVIHYHNSAEAAV   62 (288)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHHTC-EEEEEESSCHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-eEEEEeCCchHHHH
Confidence            4678999987 9999999998888899 899998887 5543

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=95.48  E-value=0.027  Score=48.35  Aligned_cols=97  Identities=21%  Similarity=0.213  Sum_probs=66.1

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHc----C-----Cc--EEEcCCCCCCccHHHHHH
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF----G-----VT--EFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~l----g-----a~--~v~~~~~~~~~~~~~~i~  266 (388)
                      +.++++||-+|+|. |..+..+++..|. .+|++++.++...+.+++.    +     .+  .++.. +     ..... 
T Consensus        75 ~~~~~~vLDiG~G~-G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~-d-----~~~~~-  146 (226)
T 1i1n_A           75 LHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVG-D-----GRMGY-  146 (226)
T ss_dssp             SCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEES-C-----GGGCC-
T ss_pred             CCCCCEEEEEcCCc-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEEC-C-----cccCc-
Confidence            78899999999876 8888888887763 2999999999888776542    2     11  12221 1     11000 


Q ss_pred             hhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          267 DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       267 ~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       ...+.||+|+........+..+.+.|+++ |.++..-.
T Consensus       147 -~~~~~fD~i~~~~~~~~~~~~~~~~Lkpg-G~lv~~~~  183 (226)
T 1i1n_A          147 -AEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILPVG  183 (226)
T ss_dssp             -GGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEEES
T ss_pred             -ccCCCcCEEEECCchHHHHHHHHHhcCCC-cEEEEEEe
Confidence             11237999987766555468889999997 99877543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=95.48  E-value=0.11  Score=47.59  Aligned_cols=127  Identities=19%  Similarity=0.225  Sum_probs=80.2

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEE-EEcCCchHHHH-HHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi-~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|.|+|.|.+|...+..++.. ++ +++ +.++++++.+. ++.+|+.  +       .++.+.+.+   ..+|+|+.|+
T Consensus         5 ~vgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~--~-------~~~~~~l~~---~~~D~V~i~t   71 (331)
T 4hkt_A            5 RFGLLGAGRIGKVHAKAVSGNADA-RLVAVADAFPAAAEAIAGAYGCE--V-------RTIDAIEAA---ADIDAVVICT   71 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCE--E-------CCHHHHHHC---TTCCEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-EEEEEECCCHHHHHHHHHHhCCC--c-------CCHHHHhcC---CCCCEEEEeC
Confidence            689999999998877766654 67 655 56777777554 4557765  2       234444432   2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------H-HhcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      ......+.+..++..  |+-+.+.     +++..+...      . -.+++.+.-...  +.....++.+.+++.+|.+
T Consensus        72 p~~~h~~~~~~al~~--gk~v~~E-----KP~~~~~~~~~~l~~~a~~~g~~~~v~~~--~r~~p~~~~~~~~i~~g~i  141 (331)
T 4hkt_A           72 PTDTHADLIERFARA--GKAIFCE-----KPIDLDAERVRACLKVVSDTKAKLMVGFN--RRFDPHFMAVRKAIDDGRI  141 (331)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEEC-----SCSCSSHHHHHHHHHHHHHTTCCEEECCG--GGGCHHHHHHHHHHHTTTT
T ss_pred             CchhHHHHHHHHHHc--CCcEEEe-----cCCCCCHHHHHHHHHHHHHcCCeEEEccc--ccCCHHHHHHHHHHHcCCC
Confidence            988878888888887  4545553     233333332      1 223444432221  2223567888889998855

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.46  E-value=0.064  Score=47.74  Aligned_cols=85  Identities=20%  Similarity=0.217  Sum_probs=59.1

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc-EEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT-EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~-~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +|.|+|+|.+|.+.+..+...|. +|+++++++++.+.+.+.|.. .+..       +..    +.  .+.|+||-|+..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~~~~~-------~~~----~~--~~~D~vi~av~~   67 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQ-------DLS----LL--QTAKIIFLCTPI   67 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEES-------CGG----GG--TTCSEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhCCCCccccC-------CHH----Hh--CCCCEEEEECCH
Confidence            68899999999999988888898 899999999988888777763 2221       111    11  278999999986


Q ss_pred             HHHHHHHHHHh----hcCCceEEEEc
Q 016507          283 ASLVQEAYACC----RKGWGKTIVLG  304 (388)
Q Consensus       283 ~~~~~~~~~~l----~~~~G~~v~~g  304 (388)
                      .. ....++.+    +++ ..++.++
T Consensus        68 ~~-~~~~~~~l~~~~~~~-~~vv~~~   91 (279)
T 2f1k_A           68 QL-ILPTLEKLIPHLSPT-AIVTDVA   91 (279)
T ss_dssp             HH-HHHHHHHHGGGSCTT-CEEEECC
T ss_pred             HH-HHHHHHHHHhhCCCC-CEEEECC
Confidence            64 44444443    343 4455543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=95.46  E-value=0.046  Score=50.38  Aligned_cols=88  Identities=20%  Similarity=0.249  Sum_probs=59.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++...+...  |+..+        .++.+.+.     ..|+|+-++
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~~~~~--g~~~~--------~~l~ell~-----~sDvV~l~~  235 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGL-AIHYHNRTRLSHALEE--GAIYH--------DTLDSLLG-----ASDIFLIAA  235 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHT--TCEEC--------SSHHHHHH-----TCSEEEECS
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCC-EEEEECCCCcchhhhc--CCeEe--------CCHHHHHh-----hCCEEEEec
Confidence            46899999999999999999999999 9999998765444332  43221        12333332     568887777


Q ss_pred             CCHHH----H-HHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL----V-QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~----~-~~~~~~l~~~~G~~v~~g~  305 (388)
                      +....    + ...+..++++ ..++.++.
T Consensus       236 Plt~~T~~li~~~~l~~mk~g-ailIN~aR  264 (345)
T 4g2n_A          236 PGRPELKGFLDHDRIAKIPEG-AVVINISR  264 (345)
T ss_dssp             CCCGGGTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred             CCCHHHHHHhCHHHHhhCCCC-cEEEECCC
Confidence            64211    1 4566777776 77777663

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=95.45  E-value=0.024  Score=48.79  Aligned_cols=96  Identities=21%  Similarity=0.179  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCC------cEEEEEcCCchHHHHHHHc----C-----Cc--EEEcCCCCCCcc
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGA------TRIIGVDVISEKFEIGKRF----G-----VT--EFVNSKNCGDKS  260 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~------~~Vi~~~~~~~~~~~~~~l----g-----a~--~v~~~~~~~~~~  260 (388)
                      .++++++||-+|.|. |..+..+++..+.      .+|++++.+++..+.+++.    +     ..  .++..+      
T Consensus        81 ~~~~~~~VLdiG~G~-G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d------  153 (227)
T 1r18_A           81 HLKPGARILDVGSGS-GYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGD------  153 (227)
T ss_dssp             TCCTTCEEEEESCTT-SHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESC------
T ss_pred             hCCCCCEEEEECCCc-cHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECC------
Confidence            578899999999876 8888888886652      3899999999877776542    2     11  122211      


Q ss_pred             HHHHHHhhcC-CCccEEEEccCCHHHHHHHHHHhhcCCceEEEEc
Q 016507          261 VSQIIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       261 ~~~~i~~~~~-g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ..+   .+.. +.||+|+...........+.+.|+++ |+++..-
T Consensus       154 ~~~---~~~~~~~fD~I~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  194 (227)
T 1r18_A          154 GRK---GYPPNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVPV  194 (227)
T ss_dssp             GGG---CCGGGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             ccc---CCCcCCCccEEEECCchHHHHHHHHHHhcCC-CEEEEEE
Confidence            111   1112 37999998776655568889999997 9887653

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=95.44  E-value=0.057  Score=47.55  Aligned_cols=79  Identities=22%  Similarity=0.223  Sum_probs=49.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE-cCCchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++ .+++++.+.+    ++.+... .  .|-.+  .+.+.+.+.+... 
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~   83 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTN--AAEVEAAISAAADK   83 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 9999999998888899 88887 5555544332    2334322 2  23332  1223332322221 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       |++|+++++.|.
T Consensus        84 ~g~id~lv~nAg~   96 (259)
T 3edm_A           84 FGEIHGLVHVAGG   96 (259)
T ss_dssp             HCSEEEEEECCCC
T ss_pred             hCCCCEEEECCCc
Confidence             379999998863

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.44  E-value=0.047  Score=48.71  Aligned_cols=80  Identities=18%  Similarity=0.282  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcc-ch--hHHHHHHHHHHcCCcEEEEEcCCc--hHHHHHHH-cCCcEE--EcCCCCCCccHHHHHHhhc--
Q 016507          200 EVGSTVVIFGL-GS--IGLAVAEGARLCGATRIIGVDVIS--EKFEIGKR-FGVTEF--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~--vG~~ai~la~~~g~~~Vi~~~~~~--~~~~~~~~-lga~~v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      -.+.++||+|+ |.  +|.+.++.+...|+ +|+++++++  +..+.+.+ .+--..  .|-.+  .+.+.+.+.+..  
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~  100 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGA-ELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVIS--DQEIKDLFVELGKV  100 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTC-EEEEEECTTCHHHHHHHHGGGCCSEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCC-EEEEeeCchHHHHHHHHHHhcCCceEEEeecCC--HHHHHHHHHHHHHH
Confidence            45789999985 55  99999888888899 899998877  44444433 332222  23332  122333333221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|++|++.|.
T Consensus       101 ~g~id~li~nAg~  113 (280)
T 3nrc_A          101 WDGLDAIVHSIAF  113 (280)
T ss_dssp             CSSCCEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            2379999999874

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=95.43  E-value=0.13  Score=47.38  Aligned_cols=129  Identities=11%  Similarity=0.104  Sum_probs=82.1

Q ss_pred             EEEEEccchhHHH-HHHHHHH-cCCcEEEE-EcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          204 TVVIFGLGSIGLA-VAEGARL-CGATRIIG-VDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       204 ~VlI~Gag~vG~~-ai~la~~-~g~~~Vi~-~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +|.|+|.|.+|.. .+...+. -++ +|++ .++++++.+ +++++|+..+++       ++.+.+..   ..+|+|+-|
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y~-------d~~ell~~---~~iDaV~I~   93 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENC-VVTAIASRDLTRAREMADRFSVPHAFG-------SYEEMLAS---DVIDAVYIP   93 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSE-EEEEEECSSHHHHHHHHHHHTCSEEES-------SHHHHHHC---SSCSEEEEC
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCe-EEEEEECCCHHHHHHHHHHcCCCeeeC-------CHHHHhcC---CCCCEEEEe
Confidence            7999999999975 4555554 467 6665 466666654 566789877653       34444432   389999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------H-HhcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          280 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      +......+.+..++..  |+=|++.     +++..+...      . -.+++.+.-...  +.....++.+.+++.+|.+
T Consensus        94 tP~~~H~~~~~~al~a--GkhVl~E-----KPla~~~~ea~~l~~~a~~~~~~l~v~~~--~R~~p~~~~~k~~i~~G~i  164 (350)
T 4had_A           94 LPTSQHIEWSIKAADA--GKHVVCE-----KPLALKAGDIDAVIAARDRNKVVVTEAYM--ITYSPVWQKVRSLIDEGAI  164 (350)
T ss_dssp             SCGGGHHHHHHHHHHT--TCEEEEC-----SCCCSSGGGGHHHHHHHHHHTCCEEECCG--GGGSHHHHHHHHHHHTTTT
T ss_pred             CCCchhHHHHHHHHhc--CCEEEEe-----CCcccchhhHHHHHHHHHHcCCceeEeee--eecCHHHHHhhHhhhcCCC
Confidence            9988878899999987  5666664     333333332      1 123444332221  2223567888889999865

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=95.43  E-value=0.039  Score=47.99  Aligned_cols=39  Identities=18%  Similarity=0.337  Sum_probs=32.7

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      ..+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~   44 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEE   44 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCChhhc
Confidence            34678999987 9999999998888899 899998887653

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=95.43  E-value=0.063  Score=48.01  Aligned_cols=70  Identities=13%  Similarity=0.098  Sum_probs=51.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCC---cEEEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGV---TEFVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga---~~v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .+.+++|+|+|.+|.+++..+...|+.+|+++.++.++.+. ++.++.   -.+...++            +. .++|+|
T Consensus       125 ~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~------------l~-~~aDiI  191 (281)
T 3o8q_A          125 KGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQ------------LK-QSYDVI  191 (281)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG------------CC-SCEEEE
T ss_pred             cCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHH------------hc-CCCCEE
Confidence            67899999999999999988888997799999999887654 344442   12322211            11 379999


Q ss_pred             EEccCCH
Q 016507          277 FECVGLA  283 (388)
Q Consensus       277 id~~g~~  283 (388)
                      |+|++..
T Consensus       192 InaTp~g  198 (281)
T 3o8q_A          192 INSTSAS  198 (281)
T ss_dssp             EECSCCC
T ss_pred             EEcCcCC
Confidence            9999765

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=95.42  E-value=0.038  Score=48.85  Aligned_cols=74  Identities=19%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhcC--CCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~~--g~~dvv  276 (388)
                      .+.++||+|+ |.+|.++++.+...|+ +|+++++++++     ...+.. ..|-.+  .+.+.+.+.+...  +++|++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~-----~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~g~iD~l   78 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGS-KVIDLSIHDPG-----EAKYDHIECDVTN--PDQVKASIDHIFKEYGSISVL   78 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSCCC-----SCSSEEEECCTTC--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEecCccc-----CCceEEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            4678999987 9999999998888999 89999887654     111211 223333  1223333332211  379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.|.
T Consensus        79 v~~Ag~   84 (264)
T 2dtx_A           79 VNNAGI   84 (264)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=95.42  E-value=0.064  Score=47.70  Aligned_cols=33  Identities=36%  Similarity=0.371  Sum_probs=29.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      .+.++||+|+ +.+|.+.++.+...|+ +|+++++
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r   43 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDI   43 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEec
Confidence            5789999987 9999999998888999 8999877

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=95.41  E-value=0.09  Score=44.47  Aligned_cols=97  Identities=18%  Similarity=0.184  Sum_probs=67.5

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE--EEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~--v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      ..+.++.+||-+|.|. |..+..+++. +. +|++++.+++..+.+++.+...  ++..+-   .++      ...+.||
T Consensus        42 ~~~~~~~~vLdiG~G~-G~~~~~l~~~-~~-~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~---~~~------~~~~~~D  109 (218)
T 3ou2_A           42 RAGNIRGDVLELASGT-GYWTRHLSGL-AD-RVTALDGSAEMIAEAGRHGLDNVEFRQQDL---FDW------TPDRQWD  109 (218)
T ss_dssp             TTTTSCSEEEEESCTT-SHHHHHHHHH-SS-EEEEEESCHHHHHHHGGGCCTTEEEEECCT---TSC------CCSSCEE
T ss_pred             hcCCCCCeEEEECCCC-CHHHHHHHhc-CC-eEEEEeCCHHHHHHHHhcCCCCeEEEeccc---ccC------CCCCcee
Confidence            3477888999998765 7777777777 77 9999999999999888766322  222111   111      1233899


Q ss_pred             EEEEccCC--------HHHHHHHHHHhhcCCceEEEEccC
Q 016507          275 YCFECVGL--------ASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       275 vvid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +|+....-        ...+..+.+.|+++ |.++.....
T Consensus       110 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~  148 (218)
T 3ou2_A          110 AVFFAHWLAHVPDDRFEAFWESVRSAVAPG-GVVEFVDVT  148 (218)
T ss_dssp             EEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEEC
T ss_pred             EEEEechhhcCCHHHHHHHHHHHHHHcCCC-eEEEEEeCC
Confidence            99865432        34478888999997 998887653

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=95.41  E-value=0.053  Score=50.38  Aligned_cols=87  Identities=26%  Similarity=0.353  Sum_probs=56.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++. +.+.+...|+..         .++.+.+.     ..|+|+-++
T Consensus       175 ~gktvGIIGlG~IG~~vA~~l~~fG~-~V~~~d~~~-~~~~~~~~g~~~---------~~l~ell~-----~aDvV~l~~  238 (365)
T 4hy3_A          175 AGSEIGIVGFGDLGKALRRVLSGFRA-RIRVFDPWL-PRSMLEENGVEP---------ASLEDVLT-----KSDFIFVVA  238 (365)
T ss_dssp             SSSEEEEECCSHHHHHHHHHHTTSCC-EEEEECSSS-CHHHHHHTTCEE---------CCHHHHHH-----SCSEEEECS
T ss_pred             CCCEEEEecCCcccHHHHHhhhhCCC-EEEEECCCC-CHHHHhhcCeee---------CCHHHHHh-----cCCEEEEcC
Confidence            37899999999999999999999999 999998875 334445556531         12322221     456776655


Q ss_pred             CCHHH-----HHHHHHHhhcCCceEEEEc
Q 016507          281 GLASL-----VQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       281 g~~~~-----~~~~~~~l~~~~G~~v~~g  304 (388)
                      .....     -...+..++++ +.++.++
T Consensus       239 Plt~~T~~li~~~~l~~mk~g-ailIN~a  266 (365)
T 4hy3_A          239 AVTSENKRFLGAEAFSSMRRG-AAFILLS  266 (365)
T ss_dssp             CSSCC---CCCHHHHHTSCTT-CEEEECS
T ss_pred             cCCHHHHhhcCHHHHhcCCCC-cEEEECc
Confidence            43210     13555666665 6666665

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=95.40  E-value=0.026  Score=49.69  Aligned_cols=74  Identities=19%  Similarity=0.216  Sum_probs=48.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhc--CCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMT--DGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~--~g~~dvv  276 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.     +.. ..|-.+  .+.+.+.+.+..  .+++|++
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~-----~~~~~~Dl~d--~~~v~~~~~~~~~~~g~iD~l   91 (253)
T 2nm0_A           20 MSRSVLVTGGNRGIGLAIARAFADAGD-KVAITYRSGEPPEG-----FLAVKCDITD--TEQVEQAYKEIEETHGPVEVL   91 (253)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTT-----SEEEECCTTS--HHHHHHHHHHHHHHTCSCSEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHhhcc-----ceEEEecCCC--HHHHHHHHHHHHHHcCCCCEE
Confidence            3678999987 9999999998888899 89999887665332     111 123333  122333332221  2379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.|.
T Consensus        92 v~nAg~   97 (253)
T 2nm0_A           92 IANAGV   97 (253)
T ss_dssp             EEECSC
T ss_pred             EECCCC
Confidence            998874

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=95.40  E-value=0.031  Score=48.42  Aligned_cols=37  Identities=22%  Similarity=0.453  Sum_probs=31.9

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      +.++||+|+ |.+|.+.++.+...|+ +|+++++++++.
T Consensus         3 ~k~vlITGas~gIG~~~a~~l~~~G~-~V~~~~r~~~~~   40 (236)
T 1ooe_A            3 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQ   40 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEecCcccc
Confidence            568999987 9999999999888899 899999887653

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=95.39  E-value=0.045  Score=50.12  Aligned_cols=78  Identities=19%  Similarity=0.181  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC-----chHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHh
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI-----SEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~-----~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~  267 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++.++     .++.+.+.    ..+... .  .|-.+  .+.+.+.+.+
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~-~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd--~~~v~~~~~~   80 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGH-RVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQS--QVSVDRAIDQ   80 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHH
Confidence            3578999987 9999999999988999 89987664     23333322    234322 2  23332  1333333333


Q ss_pred             hcC--CCccEEEEccC
Q 016507          268 MTD--GGADYCFECVG  281 (388)
Q Consensus       268 ~~~--g~~dvvid~~g  281 (388)
                      ...  |+.|+++++.|
T Consensus        81 ~~~~~g~iD~lVnnAG   96 (324)
T 3u9l_A           81 IIGEDGRIDVLIHNAG   96 (324)
T ss_dssp             HHHHHSCCSEEEECCC
T ss_pred             HHHHcCCCCEEEECCC
Confidence            221  37999999998

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=95.39  E-value=0.026  Score=49.69  Aligned_cols=68  Identities=18%  Similarity=0.179  Sum_probs=49.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      .+ +++|+|+|.+|.+++..+...|+++|+++.++.++.+.+.+ ++.   ...     .++.+.+.     ++|+||+|
T Consensus       108 ~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~---~~~-----~~~~~~~~-----~aDiVIna  173 (253)
T 3u62_A          108 KE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKI---FSL-----DQLDEVVK-----KAKSLFNT  173 (253)
T ss_dssp             CS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEE---EEG-----GGHHHHHH-----TCSEEEEC
T ss_pred             CC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHccc---CCH-----HHHHhhhc-----CCCEEEEC
Confidence            46 99999999999999999888998889999999887665432 221   111     22333222     68999998


Q ss_pred             cCC
Q 016507          280 VGL  282 (388)
Q Consensus       280 ~g~  282 (388)
                      ++.
T Consensus       174 tp~  176 (253)
T 3u62_A          174 TSV  176 (253)
T ss_dssp             SST
T ss_pred             CCC
Confidence            864

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=95.38  E-value=0.061  Score=49.77  Aligned_cols=129  Identities=17%  Similarity=0.222  Sum_probs=80.7

Q ss_pred             CEEEEEccchhHHHHHHHHHHc-CCcEEE-EEcCCchHHHH-HHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          203 STVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~-g~~~Vi-~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      -+|.|+|.|.+|...+..++.. ++ +++ +.++++++.+. ++++|+..   +     .++.+.+.+   ..+|+|+.|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~-~lvav~d~~~~~~~~~~~~~g~~~---~-----~~~~~~l~~---~~~D~V~i~   73 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKL-KLVTCYSRTEDKREKFGKRYNCAG---D-----ATMEALLAR---EDVEMVIIT   73 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSE-EEEEEECSSHHHHHHHHHHHTCCC---C-----SSHHHHHHC---SSCCEEEEC
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHcCCCC---c-----CCHHHHhcC---CCCCEEEEe
Confidence            3799999999998877777655 67 555 55777776654 45577653   1     234444432   279999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------H-HhcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          280 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      +......+.+..++..  |+-+.+.-     ++..+...      . -.+++.+.-...  +.....++.+.+++.+|.+
T Consensus        74 tp~~~h~~~~~~al~~--gk~vl~EK-----P~~~~~~~~~~l~~~a~~~~~~~~v~~~--~R~~p~~~~~k~~i~~g~i  144 (354)
T 3db2_A           74 VPNDKHAEVIEQCARS--GKHIYVEK-----PISVSLDHAQRIDQVIKETGVKFLCGHS--SRRLGALRKMKEMIDTKEI  144 (354)
T ss_dssp             SCTTSHHHHHHHHHHT--TCEEEEES-----SSCSSHHHHHHHHHHHHHHCCCEEEECG--GGGSHHHHHHHHHHHTTTT
T ss_pred             CChHHHHHHHHHHHHc--CCEEEEcc-----CCCCCHHHHHHHHHHHHHcCCeEEEeec--hhcCHHHHHHHHHHhcCCC
Confidence            9988778888888887  44455532     33333322      1 123444332221  2223567888888988865

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.37  E-value=0.027  Score=47.34  Aligned_cols=96  Identities=16%  Similarity=0.136  Sum_probs=59.5

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .+|||+|+ |.+|...++.+...|+ +|+++++++++.+.+...++..+ .|..+   .   +.+.+... ++|+||++.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~-~~d~vi~~a   75 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVLQ---A---ADVDKTVA-GQDAVIVLL   75 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTTS---H---HHHHHHHT-TCSEEEECC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCC-eEEEEEeChhhcccccCCceEEEEecCCC---H---HHHHHHHc-CCCEEEECc
Confidence            58999998 9999999998888898 99999998776533211223222 22222   2   23333332 689999998


Q ss_pred             CCHH----------HHHHHHHHhhc-CCceEEEEccC
Q 016507          281 GLAS----------LVQEAYACCRK-GWGKTIVLGVD  306 (388)
Q Consensus       281 g~~~----------~~~~~~~~l~~-~~G~~v~~g~~  306 (388)
                      +...          .....++.+.. +-++++.++..
T Consensus        76 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~  112 (206)
T 1hdo_A           76 GTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTSA  112 (206)
T ss_dssp             CCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCG
T ss_pred             cCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEEeee
Confidence            8532          13344444433 11578877653

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=95.37  E-value=0.11  Score=46.38  Aligned_cols=89  Identities=18%  Similarity=0.301  Sum_probs=60.1

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCc-EEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhcCC-CccEEEEcc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTDG-GADYCFECV  280 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~-~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~  280 (388)
                      +|.|+|+|.+|.+.++.+...|.. +|++.++++++.+.++++|... ...       +..+.+     . +.|+||.|+
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~-------~~~~~~-----~~~aDvVilav   70 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTT-------SIAKVE-----DFSPDFVMLSS   70 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEES-------CGGGGG-----GTCCSEEEECS
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccC-------CHHHHh-----cCCCCEEEEcC
Confidence            689999999999999988887752 6999999999888888888641 221       111111     2 589999999


Q ss_pred             CCHHHH---HHHHHHhhcCCceEEEEcc
Q 016507          281 GLASLV---QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~~---~~~~~~l~~~~G~~v~~g~  305 (388)
                      ......   ......++++ ..++.+++
T Consensus        71 p~~~~~~v~~~l~~~l~~~-~iv~~~~~   97 (281)
T 2g5c_A           71 PVRTFREIAKKLSYILSED-ATVTDQGS   97 (281)
T ss_dssp             CHHHHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred             CHHHHHHHHHHHHhhCCCC-cEEEECCC
Confidence            876422   2233345554 55555554

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.36  E-value=0.073  Score=49.02  Aligned_cols=128  Identities=15%  Similarity=0.151  Sum_probs=78.5

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEE-EEcCCchHHHH-HHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi-~~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|.|+|.|.+|...+..++.. ++ +++ +.++++++.+. ++.+|+ .++       .++.+.+.   ...+|+|+.|+
T Consensus         6 rvgiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~a~~~g~-~~~-------~~~~~~l~---~~~~D~V~i~t   73 (344)
T 3euw_A            6 RIALFGAGRIGHVHAANIAANPDL-ELVVIADPFIEGAQRLAEANGA-EAV-------ASPDEVFA---RDDIDGIVIGS   73 (344)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHTTTC-EEE-------SSHHHHTT---CSCCCEEEECS
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCc-EEEEEECCCHHHHHHHHHHcCC-cee-------CCHHHHhc---CCCCCEEEEeC
Confidence            789999999999887776654 66 555 56777777554 555774 333       22333322   12799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------HH-hcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------VL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      ......+.+..++..+  +-+.+.     +++..+...      .. .+++.+.-...  +.....++.+.+++.+|.+
T Consensus        74 p~~~h~~~~~~al~~g--k~v~~E-----KP~~~~~~~~~~l~~~a~~~g~~~~v~~~--~r~~p~~~~~k~~i~~g~i  143 (344)
T 3euw_A           74 PTSTHVDLITRAVERG--IPALCE-----KPIDLDIEMVRACKEKIGDGASKVMLGFN--RRFDPSFAAINARVANQEI  143 (344)
T ss_dssp             CGGGHHHHHHHHHHTT--CCEEEC-----SCSCSCHHHHHHHHHHHGGGGGGEEECCG--GGGCHHHHHHHHHHHTTTT
T ss_pred             CchhhHHHHHHHHHcC--CcEEEE-----CCCCCCHHHHHHHHHHHHhcCCeEEecch--hhcCHHHHHHHHHHhcCCC
Confidence            9888788888888874  444443     233333332      11 22333322211  2223567888888988855

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=95.36  E-value=0.041  Score=48.61  Aligned_cols=81  Identities=17%  Similarity=0.224  Sum_probs=51.5

Q ss_pred             CCCCCEEEEEcc---chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEE--EcCCCCCCccHHHHHHhhc
Q 016507          199 VEVGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       199 ~~~~~~VlI~Ga---g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      ..++.+|||+|+   |.+|.+.++.+...|+ +|++++++++..+.+++    .+...+  .|-.+  .+.+.+.+.+..
T Consensus        11 ~~~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   87 (271)
T 3ek2_A           11 FLDGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVAD--DAQIDALFASLK   87 (271)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCC--HHHHHHHHHHHH
Confidence            456789999974   6999999998888899 89999887654444433    332222  23332  122333332221


Q ss_pred             --CCCccEEEEccCC
Q 016507          270 --DGGADYCFECVGL  282 (388)
Q Consensus       270 --~g~~dvvid~~g~  282 (388)
                        .+++|++|++.|.
T Consensus        88 ~~~g~id~lv~nAg~  102 (271)
T 3ek2_A           88 THWDSLDGLVHSIGF  102 (271)
T ss_dssp             HHCSCEEEEEECCCC
T ss_pred             HHcCCCCEEEECCcc
Confidence              2379999998873

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=95.35  E-value=0.046  Score=45.89  Aligned_cols=62  Identities=24%  Similarity=0.336  Sum_probs=43.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|||+|+ |.+|...++.+. .|+ +|++++++++          ....|-.+  .+.+.+.+.++  +++|++|++.|
T Consensus         5 ~vlVtGasg~iG~~~~~~l~-~g~-~V~~~~r~~~----------~~~~D~~~--~~~~~~~~~~~--~~~d~vi~~ag   67 (202)
T 3d7l_A            5 KILLIGASGTLGSAVKERLE-KKA-EVITAGRHSG----------DVTVDITN--IDSIKKMYEQV--GKVDAIVSATG   67 (202)
T ss_dssp             EEEEETTTSHHHHHHHHHHT-TTS-EEEEEESSSS----------SEECCTTC--HHHHHHHHHHH--CCEEEEEECCC
T ss_pred             EEEEEcCCcHHHHHHHHHHH-CCC-eEEEEecCcc----------ceeeecCC--HHHHHHHHHHh--CCCCEEEECCC
Confidence            6999987 999999998888 899 8999988764          12233333  12233333333  47899999887

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=95.35  E-value=0.053  Score=49.50  Aligned_cols=78  Identities=22%  Similarity=0.209  Sum_probs=50.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC---------CchHHHH----HHHcCCcEEEcCCCCCCccHHHHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV---------ISEKFEI----GKRFGVTEFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~---------~~~~~~~----~~~lga~~v~~~~~~~~~~~~~~i~  266 (388)
                      .+.++||+|+ |.+|..+++.+...|+ +|+++++         +.++.+.    ++..+...+.|..+  ..++.+.+.
T Consensus         8 ~gk~~lVTGas~GIG~~~a~~La~~Ga-~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~--~~~~~~~~~   84 (319)
T 1gz6_A            8 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDS--VEAGEKLVK   84 (319)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCC--GGGHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCC--HHHHHHHHH
Confidence            4678999987 9999999998888899 8988643         4444332    22334444556554  122323332


Q ss_pred             hhc--CCCccEEEEccC
Q 016507          267 DMT--DGGADYCFECVG  281 (388)
Q Consensus       267 ~~~--~g~~dvvid~~g  281 (388)
                      +..  .+++|++|++.|
T Consensus        85 ~~~~~~g~iD~lVnnAG  101 (319)
T 1gz6_A           85 TALDTFGRIDVVVNNAG  101 (319)
T ss_dssp             HHHHHTSCCCEEEECCC
T ss_pred             HHHHHcCCCCEEEECCC
Confidence            221  247999999987

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.34  E-value=0.042  Score=50.18  Aligned_cols=98  Identities=13%  Similarity=0.091  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-----C--CcEE--EcCCCCCCccHHHHHHhhc
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----G--VTEF--VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-----g--a~~v--~~~~~~~~~~~~~~i~~~~  269 (388)
                      .++.+|||+|+ |.+|..++..+...|+ +|++++++.++.+.+...     +  +..+  .|-.+   .+   .+.+..
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d---~~---~~~~~~   81 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLK---QG---AYDEVI   81 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTS---TT---TTTTTT
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcC---hH---HHHHHH
Confidence            45779999997 9999999998888899 999999987765544321     2  2222  13222   11   122222


Q ss_pred             CCCccEEEEccCCH--------------HHHHHHHHHhhc--CCceEEEEcc
Q 016507          270 DGGADYCFECVGLA--------------SLVQEAYACCRK--GWGKTIVLGV  305 (388)
Q Consensus       270 ~g~~dvvid~~g~~--------------~~~~~~~~~l~~--~~G~~v~~g~  305 (388)
                      . ++|+||++.+..              .....+++.+.+  +.++++.++.
T Consensus        82 ~-~~d~vih~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS  132 (342)
T 1y1p_A           82 K-GAAGVAHIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSS  132 (342)
T ss_dssp             T-TCSEEEECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECC
T ss_pred             c-CCCEEEEeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecc
Confidence            2 799999998742              112344454442  1268888775

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=95.34  E-value=0.053  Score=48.06  Aligned_cols=101  Identities=19%  Similarity=0.262  Sum_probs=61.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE-cCCchHHHHH----HHcCCcEE---EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTEF---VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |++|.+.++.+...|+ +|+++ .+++++.+.+    +..+....   .|-.+  .+.+.+.+.+... 
T Consensus        26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~  102 (267)
T 3u5t_A           26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSD--PAAVRRLFATAEEA  102 (267)
T ss_dssp             -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            5789999987 9999999988888899 77776 4455444333    23343322   23333  1223222222211 


Q ss_pred             -CCccEEEEccCCH-------------------------HHHHHHHHHhhcCCceEEEEcc
Q 016507          271 -GGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       271 -g~~dvvid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       +++|+++++.|..                         ...+.++..++.+ |+++.++.
T Consensus       103 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~-g~iv~isS  162 (267)
T 3u5t_A          103 FGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVG-GRIINMST  162 (267)
T ss_dssp             HSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CeEEEEeC
Confidence             3799999998741                         1133455556666 89998875

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.33  E-value=0.13  Score=46.06  Aligned_cols=75  Identities=16%  Similarity=0.236  Sum_probs=51.2

Q ss_pred             CCCCEEEEEc-cchhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHc----CCc-EEEcCCCCCCccHHHHHHhhcCCC
Q 016507          200 EVGSTVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRF----GVT-EFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       200 ~~~~~VlI~G-ag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~l----ga~-~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      .++.++||+| +|++|.+++..+...|+ +|+++++++++.+.+ +.+    ++. ...|..+   .   +.+.+... .
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~-~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~---~---~~~~~~~~-~  188 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD---D---ASRAEAVK-G  188 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS---H---HHHHHHTT-T
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCC---H---HHHHHHHH-h
Confidence            4678999999 59999999999988999 799999987766533 222    222 2234333   2   22333222 5


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|++++++|.
T Consensus       189 ~DvlVn~ag~  198 (287)
T 1lu9_A          189 AHFVFTAGAI  198 (287)
T ss_dssp             CSEEEECCCT
T ss_pred             CCEEEECCCc
Confidence            8999999974

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=95.32  E-value=0.031  Score=51.34  Aligned_cols=88  Identities=20%  Similarity=0.240  Sum_probs=60.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++..|+ +|++.+++.++.+.+..+|+..+         ++.+.+.     ..|+|+.++
T Consensus       154 ~g~~vgIIG~G~iG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~g~~~~---------~l~e~l~-----~aDvVi~~v  218 (330)
T 2gcg_A          154 TQSTVGIIGLGRIGQAIARRLKPFGV-QRFLYTGRQPRPEEAAEFQAEFV---------STPELAA-----QSDFIVVAC  218 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-CEEEEESSSCCHHHHHTTTCEEC---------CHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCCCcchhHHHhcCceeC---------CHHHHHh-----hCCEEEEeC
Confidence            46799999999999999999999999 89999987766665555554321         1222222     568888887


Q ss_pred             CCHHH----H-HHHHHHhhcCCceEEEEc
Q 016507          281 GLASL----V-QEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       281 g~~~~----~-~~~~~~l~~~~G~~v~~g  304 (388)
                      +....    + ...+..++++ ..++.++
T Consensus       219 p~~~~t~~~i~~~~~~~mk~g-ailIn~s  246 (330)
T 2gcg_A          219 SLTPATEGLCNKDFFQKMKET-AVFINIS  246 (330)
T ss_dssp             CCCTTTTTCBSHHHHHHSCTT-CEEEECS
T ss_pred             CCChHHHHhhCHHHHhcCCCC-cEEEECC
Confidence            65311    2 3456677775 6666554

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.32  E-value=0.03  Score=47.97  Aligned_cols=100  Identities=14%  Similarity=0.135  Sum_probs=65.8

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHHH
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i~  266 (388)
                      .....++.+||-+|.|. |..++.+++..  +. +|++++.+++..+.+++    .|..   .++.      .+..+.+.
T Consensus        53 l~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~------~d~~~~~~  124 (223)
T 3duw_A           53 LVQIQGARNILEIGTLG-GYSTIWLARGLSSGG-RVVTLEASEKHADIARSNIERANLNDRVEVRT------GLALDSLQ  124 (223)
T ss_dssp             HHHHHTCSEEEEECCTT-SHHHHHHHTTCCSSC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE------SCHHHHHH
T ss_pred             HHHhhCCCEEEEecCCc-cHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE------cCHHHHHH
Confidence            34456789999998864 77888888876  45 99999999988777654    3442   1222      22333333


Q ss_pred             hhc---CCCccEEEEccCC---HHHHHHHHHHhhcCCceEEEEc
Q 016507          267 DMT---DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       267 ~~~---~g~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      .+.   .+.||+||-....   ...+..+.+.|+++ |.++.-.
T Consensus       125 ~~~~~~~~~fD~v~~d~~~~~~~~~l~~~~~~L~pg-G~lv~~~  167 (223)
T 3duw_A          125 QIENEKYEPFDFIFIDADKQNNPAYFEWALKLSRPG-TVIIGDN  167 (223)
T ss_dssp             HHHHTTCCCCSEEEECSCGGGHHHHHHHHHHTCCTT-CEEEEES
T ss_pred             HHHhcCCCCcCEEEEcCCcHHHHHHHHHHHHhcCCC-cEEEEeC
Confidence            322   1369999844322   23477888999997 9777654

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=95.32  E-value=0.058  Score=47.51  Aligned_cols=79  Identities=19%  Similarity=0.380  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHcCCcEEEEEcCCch---HHHHHHH-cCCcEEE--cCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGKR-FGVTEFV--NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga---g~vG~~ai~la~~~g~~~Vi~~~~~~~---~~~~~~~-lga~~v~--~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+   |.+|.+.++.+...|+ +|++++++++   ..+.+.+ .+....+  |-.+  .+.+.+.+.+... 
T Consensus         7 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   83 (261)
T 2wyu_A            7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQ--DEELDALFAGVKEA   83 (261)
T ss_dssp             TTCEEEEESCCSSSSHHHHHHHHHHHHTC-EEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCC--HHHHHHHHHHHHHH
Confidence            4678999985   6999999888888899 8999988775   2222222 3322222  3333  1223332322211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        84 ~g~iD~lv~~Ag~   96 (261)
T 2wyu_A           84 FGGLDYLVHAIAF   96 (261)
T ss_dssp             HSSEEEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999874

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=95.32  E-value=0.058  Score=49.55  Aligned_cols=87  Identities=17%  Similarity=0.110  Sum_probs=60.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.  +... +..    .    .++.+.+.     ..|+|+.++
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~-~V~~~d~~~~~~--~~~~-~~~----~----~~l~ell~-----~aDvV~l~~  207 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPE--LEKK-GYY----V----DSLDDLYK-----QADVISLHV  207 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHH--HHHT-TCB----C----SCHHHHHH-----HCSEEEECS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcchh--HHhh-Cee----c----CCHHHHHh-----hCCEEEEcC
Confidence            46899999999999999999999999 999999887654  2332 221    1    12333332     578888887


Q ss_pred             CCHHH----H-HHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL----V-QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~----~-~~~~~~l~~~~G~~v~~g~  305 (388)
                      .....    + ...+..++++ +.++.++.
T Consensus       208 p~~~~t~~li~~~~l~~mk~g-a~lIn~ar  236 (333)
T 1j4a_A          208 PDVPANVHMINDESIAKMKQD-VVIVNVSR  236 (333)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             CCcHHHHHHHhHHHHhhCCCC-cEEEECCC
Confidence            75421    1 3566778886 77777764

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=95.31  E-value=0.1  Score=48.69  Aligned_cols=130  Identities=15%  Similarity=0.097  Sum_probs=82.1

Q ss_pred             CEEEEEccchhHHHHHHHHHH--------cCCcEEEE-EcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCC
Q 016507          203 STVVIFGLGSIGLAVAEGARL--------CGATRIIG-VDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~--------~g~~~Vi~-~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      =+|.|+|.|.+|...+...+.        -++ ++++ .++++++.+ +++++|...++.       ++.+.+.+   ..
T Consensus        26 irvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~-~lvav~d~~~~~a~~~a~~~g~~~~y~-------d~~ell~~---~~   94 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAWNAVKTVFGDVERP-RLVHLAEANAGLAEARAGEFGFEKATA-------DWRALIAD---PE   94 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTHHHHHCSSCCC-EEEEEECC--TTHHHHHHHHTCSEEES-------CHHHHHHC---TT
T ss_pred             ccEEEEcCCHHHHHHHHHHHhhhhhhccCCCc-EEEEEECCCHHHHHHHHHHhCCCeecC-------CHHHHhcC---CC
Confidence            489999999999765544332        255 5554 466666554 566789876652       34444432   28


Q ss_pred             ccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH-------HhcCcEEEEeeecCCCccCcHHHHHH
Q 016507          273 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV-------LHSGKILMGSLFGGLKAKSDIPILLK  345 (388)
Q Consensus       273 ~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-------~~~~~~i~g~~~~~~~~~~~~~~~~~  345 (388)
                      +|+|+-|+......+.+..++..  |+=|++.     +++..+....       -.+++.+.-..  .+.....++.+.+
T Consensus        95 iDaV~IatP~~~H~~~a~~al~a--GkhVl~E-----KPla~~~~ea~~l~~~a~~~g~~l~vg~--~~R~~p~~~~~k~  165 (393)
T 4fb5_A           95 VDVVSVTTPNQFHAEMAIAALEA--GKHVWCE-----KPMAPAYADAERMLATAERSGKVAALGY--NYIQNPVMRHIRK  165 (393)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHT--TCEEEEC-----SCSCSSHHHHHHHHHHHHHSSSCEEECC--GGGGCHHHHHHHH
T ss_pred             CcEEEECCChHHHHHHHHHHHhc--CCeEEEc-----cCCcccHHHHHHhhhhHHhcCCcccccc--ccccChHHHHHHH
Confidence            99999999988888999999987  5666663     4555555432       13344433222  1222456788889


Q ss_pred             HHhCCCC
Q 016507          346 RYMDKEL  352 (388)
Q Consensus       346 ~~~~~~~  352 (388)
                      ++.+|.+
T Consensus       166 ~i~~G~i  172 (393)
T 4fb5_A          166 LVGDGVI  172 (393)
T ss_dssp             HHHTTTT
T ss_pred             HHHcCCC
Confidence            9999865

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=95.31  E-value=0.04  Score=48.71  Aligned_cols=79  Identities=20%  Similarity=0.255  Sum_probs=50.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.+|||+|+ |.+|...++.+...|+ +|+++++ ++++.+.+    ++.+... .  .|-.+  ...+.+.+.+... 
T Consensus        20 ~~k~vlItGasggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           20 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK--PSEVVALFDKAVSH   96 (274)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHHHH
Confidence            4678999987 9999999998888899 8998887 55554332    2334432 2  23332  1223333332211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|++|++.|.
T Consensus        97 ~~~~d~vi~~Ag~  109 (274)
T 1ja9_A           97 FGGLDFVMSNSGM  109 (274)
T ss_dssp             HSCEEEEECCCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999998873

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=95.31  E-value=0.026  Score=49.95  Aligned_cols=75  Identities=13%  Similarity=0.102  Sum_probs=47.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhc--CCCccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT--DGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~--~g~~dvvi  277 (388)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.++++++.. ..+.+  ....|-.+  .++..+.+.+..  -|+.|+++
T Consensus        10 ~GK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~-~~~~~--~~~~Dv~~--~~~v~~~~~~~~~~~G~iDilV   83 (261)
T 4h15_A           10 RGKRALITAGTKGAGAATVSLFLELGA-QVLTTARARPEG-LPEEL--FVEADLTT--KEGCAIVAEATRQRLGGVDVIV   83 (261)
T ss_dssp             TTCEEEESCCSSHHHHHHHHHHHHTTC-EEEEEESSCCTT-SCTTT--EEECCTTS--HHHHHHHHHHHHHHTSSCSEEE
T ss_pred             CCCEEEEeccCcHHHHHHHHHHHHcCC-EEEEEECCchhC-CCcEE--EEEcCCCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            6889999987 9999999999999999 999998865421 11111  11223332  122222222221  24799999


Q ss_pred             EccC
Q 016507          278 ECVG  281 (388)
Q Consensus       278 d~~g  281 (388)
                      ++.|
T Consensus        84 nnAG   87 (261)
T 4h15_A           84 HMLG   87 (261)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9876

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=95.31  E-value=0.031  Score=51.67  Aligned_cols=89  Identities=22%  Similarity=0.318  Sum_probs=57.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.+++.++. ....+|+..+        .++.+.+.     ..|+|+-++
T Consensus       167 ~g~tvGIIG~G~IG~~vA~~l~~~G~-~V~~~d~~~~~~-~~~~~g~~~~--------~~l~ell~-----~aDvV~l~~  231 (347)
T 1mx3_A          167 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV--------STLQDLLF-----HSDCVTLHC  231 (347)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC--------SSHHHHHH-----HCSEEEECC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEECCCcchh-hHhhcCCeec--------CCHHHHHh-----cCCEEEEcC
Confidence            57899999999999999999999999 899998765542 3344565321        12322222     457777766


Q ss_pred             CCHH----HH-HHHHHHhhcCCceEEEEcc
Q 016507          281 GLAS----LV-QEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~----~~-~~~~~~l~~~~G~~v~~g~  305 (388)
                      ....    .+ ...+..++++ ..++.++.
T Consensus       232 P~t~~t~~li~~~~l~~mk~g-ailIN~ar  260 (347)
T 1mx3_A          232 GLNEHNHHLINDFTVKQMRQG-AFLVNTAR  260 (347)
T ss_dssp             CCCTTCTTSBSHHHHTTSCTT-EEEEECSC
T ss_pred             CCCHHHHHHhHHHHHhcCCCC-CEEEECCC
Confidence            5421    11 3455666665 66666654

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=95.31  E-value=0.056  Score=49.53  Aligned_cols=41  Identities=15%  Similarity=0.097  Sum_probs=34.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEc-CCchHHHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFEIG  242 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~-~~~~~~~~~  242 (388)
                      .+.++||+|+ |.+|.++++.+...|+ +|++++ +++++.+.+
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~-~Vv~~~~r~~~~~~~~   87 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRSAAEANAL   87 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHH
Confidence            4678999987 9999999999988999 899998 887765443

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.30  E-value=0.098  Score=50.18  Aligned_cols=93  Identities=8%  Similarity=0.023  Sum_probs=58.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEE--EcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEF--VNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v--~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      +.+|+|+|+|.+|..++..+...|+ +|++++++.++.+.+.+ ++....  +|..+   .   +.+.+... ++|+|++
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~-~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d---~---~~l~~~l~-~~DvVIn   74 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDVND---D---AALDAEVA-KHDLVIS   74 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESSHHHHHHTTTTCTTEEEEECCTTC---H---HHHHHHHT-TSSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcC-EEEEEECCHHHHHHHHHhcCCceEEEeecCC---H---HHHHHHHc-CCcEEEE
Confidence            5689999999999999888888898 79999998877654432 331112  23222   1   12222222 7999999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      |++..........++..+ ..++..
T Consensus        75 ~a~~~~~~~i~~a~l~~g-~~vvd~   98 (450)
T 1ff9_A           75 LIPYTFHATVIKSAIRQK-KHVVTT   98 (450)
T ss_dssp             CCC--CHHHHHHHHHHHT-CEEEES
T ss_pred             CCccccchHHHHHHHhCC-CeEEEe
Confidence            998653233445556664 555544

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.30  E-value=0.053  Score=49.53  Aligned_cols=74  Identities=22%  Similarity=0.258  Sum_probs=48.3

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH--HHHHHcCC--c-EEE--cCCCCCCccHHHHHHhhcCC-C
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF--EIGKRFGV--T-EFV--NSKNCGDKSVSQIIIDMTDG-G  272 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~--~~~~~lga--~-~v~--~~~~~~~~~~~~~i~~~~~g-~  272 (388)
                      +.+|||+|+ |.+|..+++.+...|+ +|+++++++++.  +.++.++.  . ..+  |-.+   .   +.+.+...+ +
T Consensus         3 ~~~vlVtGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~---~~~~~~~~~~~   75 (345)
T 2z1m_A            3 GKRALITGIRGQDGAYLAKLLLEKGY-EVYGADRRSGEFASWRLKELGIENDVKIIHMDLLE---F---SNIIRTIEKVQ   75 (345)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTC---H---HHHHHHHHHHC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCCcccccccHhhccccCceeEEECCCCC---H---HHHHHHHHhcC
Confidence            568999997 9999999988888898 999999877543  23344321  1 122  2222   1   223332223 6


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+||++.+.
T Consensus        76 ~d~vih~A~~   85 (345)
T 2z1m_A           76 PDEVYNLAAQ   85 (345)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            8999999874

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=95.29  E-value=0.0077  Score=52.89  Aligned_cols=100  Identities=22%  Similarity=0.260  Sum_probs=68.6

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i  265 (388)
                      +.....+.++.+||-+|.|. |..+..+++..+. +|++++.++...+.+++    .|..   .++..+-   .++.   
T Consensus        28 l~~~~~~~~~~~VLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~---~~~~---   99 (256)
T 1nkv_A           28 LGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDA---AGYV---   99 (256)
T ss_dssp             HHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCC---TTCC---
T ss_pred             HHHhcCCCCCCEEEEECCCC-CHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECCh---HhCC---
Confidence            45667788999999999876 7788888888888 99999999988777654    3432   1222111   1110   


Q ss_pred             HhhcCCCccEEEEcc------CCHHHHHHHHHHhhcCCceEEEEc
Q 016507          266 IDMTDGGADYCFECV------GLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       266 ~~~~~g~~dvvid~~------g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                        . .+.||+|+..-      .....+..+.+.|+++ |.++...
T Consensus       100 --~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~Lkpg-G~l~~~~  140 (256)
T 1nkv_A          100 --A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  140 (256)
T ss_dssp             --C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             --c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCC-eEEEEec
Confidence              1 23799998522      2234478888999997 9888754

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=95.28  E-value=0.044  Score=48.63  Aligned_cols=80  Identities=19%  Similarity=0.139  Sum_probs=49.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE-cCCchHHHHHH----HcCCcE-EE--cCCCCCCccHHHHHHhhcC
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIGK----RFGVTE-FV--NSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~~~~~~~~~~~----~lga~~-v~--~~~~~~~~~~~~~i~~~~~  270 (388)
                      ..+.+|||+|+ |.+|.+.++.+...|+ +|+++ .+++++.+.+.    +.+... ++  |-.+  .+++.+.+.+...
T Consensus        24 ~~~k~vlITGas~gIG~a~a~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~  100 (272)
T 4e3z_A           24 SDTPVVLVTGGSRGIGAAVCRLAARQGW-RVGVNYAANREAADAVVAAITESGGEAVAIPGDVGN--AADIAAMFSAVDR  100 (272)
T ss_dssp             CCSCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCC--HHHHHHHHHHHHH
Confidence            35678999987 9999999999888999 77665 66666554332    233322 22  3322  1223333322211


Q ss_pred             --CCccEEEEccCC
Q 016507          271 --GGADYCFECVGL  282 (388)
Q Consensus       271 --g~~dvvid~~g~  282 (388)
                        +++|++|++.|.
T Consensus       101 ~~g~id~li~nAg~  114 (272)
T 4e3z_A          101 QFGRLDGLVNNAGI  114 (272)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             hCCCCCEEEECCCC
Confidence              379999998873

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=95.26  E-value=0.066  Score=48.54  Aligned_cols=101  Identities=18%  Similarity=0.255  Sum_probs=68.5

Q ss_pred             HHhcC-CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHH
Q 016507          194 WRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  265 (388)
Q Consensus       194 ~~~~~-~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i  265 (388)
                      .+... +.++++||-+|.|. |..+..+++..++ +|++++.+++..+.+++    .|..   .++..+-   .++    
T Consensus       109 ~~~l~~~~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~----  179 (312)
T 3vc1_A          109 MDHLGQAGPDDTLVDAGCGR-GGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM---LDT----  179 (312)
T ss_dssp             HTTSCCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT---TSC----
T ss_pred             HHHhccCCCCCEEEEecCCC-CHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh---hcC----
Confidence            34444 78899999998865 7777888887787 99999999988877665    3432   1222111   111    


Q ss_pred             HhhcCCCccEEEEcc-----CCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          266 IDMTDGGADYCFECV-----GLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g~~dvvid~~-----g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       .+..+.||+|+..-     +-...+..+.+.|+++ |+++....
T Consensus       180 -~~~~~~fD~V~~~~~l~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  222 (312)
T 3vc1_A          180 -PFDKGAVTASWNNESTMYVDLHDLFSEHSRFLKVG-GRYVTITG  222 (312)
T ss_dssp             -CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -CCCCCCEeEEEECCchhhCCHHHHHHHHHHHcCCC-cEEEEEEc
Confidence             01223899997632     2245588999999998 99987764

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=95.26  E-value=0.09  Score=47.17  Aligned_cols=74  Identities=24%  Similarity=0.243  Sum_probs=52.5

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+.. .       .+..+.+.     ..|+||-|+..+
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~g~~~-~-------~~~~~~~~-----~~Dvvi~~vp~~   67 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGY-PLIIYDVFPDACKEFQDAGEQV-V-------SSPADVAE-----KADRIITMLPTS   67 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTC-CEEEECSSTHHHHHHHTTTCEE-C-------SSHHHHHH-----HCSEEEECCSSH
T ss_pred             eEEEEeccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCCee-c-------CCHHHHHh-----cCCEEEEeCCCH
Confidence            58899999999998888888898 8999999998888777666431 1       12222222     468888888666


Q ss_pred             HHHHHHHH
Q 016507          284 SLVQEAYA  291 (388)
Q Consensus       284 ~~~~~~~~  291 (388)
                      ..+...+.
T Consensus        68 ~~~~~v~~   75 (296)
T 2gf2_A           68 INAIEAYS   75 (296)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            54555554

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.047  Score=47.95  Aligned_cols=78  Identities=18%  Similarity=0.289  Sum_probs=49.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHH-HcCCcEE---EcCCCCCCccHHHHHHhhcC--CC
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKFEIGK-RFGVTEF---VNSKNCGDKSVSQIIIDMTD--GG  272 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~-~lga~~v---~~~~~~~~~~~~~~i~~~~~--g~  272 (388)
                      +.++||+|+ |++|.+.++.+...  |+ +|+.+++++++.+.+. .++....   .|-.+  .+.+.+.+.+...  |+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~   78 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDT-VVYGVARSEAPLKKLKEKYGDRFFYVVGDITE--DSVLKQLVNAAVKGHGK   78 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSC-EEEEEESCHHHHHHHHHHHGGGEEEEESCTTS--HHHHHHHHHHHHHHHSC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCe-EEEEecCCHHHHHHHHHHhCCceEEEECCCCC--HHHHHHHHHHHHHhcCC
Confidence            568999987 99999888766555  46 8988988887766544 3443322   23333  1223222322211  37


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+++++.|.
T Consensus        79 id~lvnnAg~   88 (254)
T 3kzv_A           79 IDSLVANAGV   88 (254)
T ss_dssp             CCEEEEECCC
T ss_pred             ccEEEECCcc
Confidence            9999998874

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.25  E-value=0.038  Score=49.18  Aligned_cols=78  Identities=28%  Similarity=0.304  Sum_probs=49.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .+.++||+|+ |.+|...+..+...|+ +|+++++++++.+.+.    ..+... .  .|-.+  .+.+.+.+.+...  
T Consensus        33 ~~k~vlITGasggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~~  109 (279)
T 3ctm_A           33 KGKVASVTGSSGGIGWAVAEAYAQAGA-DVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISD--PKSVEETISQQEKDF  109 (279)
T ss_dssp             TTCEEEETTTTSSHHHHHHHHHHHHTC-EEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCC--HHHHHHHHHHHHHHh
Confidence            4678999987 9999998888877899 8999988776544332    234322 2  23332  1223333332211  


Q ss_pred             CCccEEEEccC
Q 016507          271 GGADYCFECVG  281 (388)
Q Consensus       271 g~~dvvid~~g  281 (388)
                      +++|++|++.|
T Consensus       110 g~id~li~~Ag  120 (279)
T 3ctm_A          110 GTIDVFVANAG  120 (279)
T ss_dssp             SCCSEEEECGG
T ss_pred             CCCCEEEECCc
Confidence            36999999887

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=95.25  E-value=0.061  Score=49.59  Aligned_cols=76  Identities=21%  Similarity=0.199  Sum_probs=51.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHH-c---CCcEE-EcCCCCCCccHHHHHHhhcCCC
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-F---GVTEF-VNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~-l---ga~~v-~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      -.+.+|||+|+ |.+|...++.+... |+.+|+++++++.+.+.+.. +   ++..+ .|-.+      .+.+.+... +
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d------~~~l~~~~~-~   91 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRD------LERLNYALE-G   91 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTC------HHHHHHHTT-T
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCC------HHHHHHHHh-c
Confidence            34679999997 99999998888777 86689999998877655433 3   22222 23332      223333332 7


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+||++.+.
T Consensus        92 ~D~Vih~Aa~  101 (344)
T 2gn4_A           92 VDICIHAAAL  101 (344)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999874

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=95.24  E-value=0.023  Score=48.83  Aligned_cols=64  Identities=17%  Similarity=0.169  Sum_probs=44.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++++             .|-.+  .+.+.+.+.++  +++|+++++
T Consensus         5 ~~k~vlVTGas~gIG~~~a~~l~~~G~-~V~~~~r~~~-------------~D~~~--~~~v~~~~~~~--g~id~lv~n   66 (223)
T 3uce_A            5 DKTVYVVLGGTSGIGAELAKQLESEHT-IVHVASRQTG-------------LDISD--EKSVYHYFETI--GAFDHLIVT   66 (223)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHCSTTE-EEEEESGGGT-------------CCTTC--HHHHHHHHHHH--CSEEEEEEC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEecCCcc-------------cCCCC--HHHHHHHHHHh--CCCCEEEEC
Confidence            4678999987 9999999998888899 8999887654             23222  12233333333  478888888


Q ss_pred             cCC
Q 016507          280 VGL  282 (388)
Q Consensus       280 ~g~  282 (388)
                      .|.
T Consensus        67 Ag~   69 (223)
T 3uce_A           67 AGS   69 (223)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            773

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.24  E-value=0.036  Score=49.32  Aligned_cols=95  Identities=19%  Similarity=0.254  Sum_probs=65.4

Q ss_pred             ccccchhhhhHHHHHHhcC-CCCCCEEEEEccc-hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~-~~~~~~VlI~Gag-~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  257 (388)
                      ..+||+.......+ +... --.|.+|+|+|.| .+|.-+++++...|+ +|+++.+..                     
T Consensus       137 ~~~PcTp~gi~~ll-~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gA-tVtv~hs~t---------------------  193 (288)
T 1b0a_A          137 RLRPCTPRGIVTLL-ERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT---------------------  193 (288)
T ss_dssp             SSCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC---------------------
T ss_pred             CCCCCcHHHHHHHH-HHcCCCCCCCEEEEECCChHHHHHHHHHHHHCCC-eEEEEeCCc---------------------
Confidence            34666555544433 3333 3578999999987 579999999999999 888875322                     


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       .++.+.++     .+|+||-++|.+..+.  -+.++++ ..++.+|..
T Consensus       194 -~~L~~~~~-----~ADIVI~Avg~p~lI~--~~~vk~G-avVIDVgi~  233 (288)
T 1b0a_A          194 -KNLRHHVE-----NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN  233 (288)
T ss_dssp             -SCHHHHHH-----HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred             -hhHHHHhc-----cCCEEEECCCCcCcCC--HHHcCCC-cEEEEccCC
Confidence             34555554     5799999999875222  2336776 888888864

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=95.23  E-value=0.044  Score=48.80  Aligned_cols=91  Identities=15%  Similarity=0.123  Sum_probs=62.5

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      .+|||+|+|.+|...+..+...|+ +|+++++++.+.+.+...++..+.- +-   .++.       -.++|+||++.+.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~-D~---~d~~-------~~~~d~vi~~a~~   73 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRASGAEPLLW-PG---EEPS-------LDGVTHLLISTAP   73 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHHTTEEEEES-SS---SCCC-------CTTCCEEEECCCC
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhhCCCeEEEe-cc---cccc-------cCCCCEEEECCCc
Confidence            579999999999999999988899 9999999998887777666654421 11   1211       2389999999874


Q ss_pred             H----HHHHHHHHHhhc---CCceEEEEcc
Q 016507          283 A----SLVQEAYACCRK---GWGKTIVLGV  305 (388)
Q Consensus       283 ~----~~~~~~~~~l~~---~~G~~v~~g~  305 (388)
                      .    ......++.+..   +-.+++.++.
T Consensus        74 ~~~~~~~~~~l~~a~~~~~~~~~~~v~~Ss  103 (286)
T 3ius_A           74 DSGGDPVLAALGDQIAARAAQFRWVGYLST  103 (286)
T ss_dssp             BTTBCHHHHHHHHHHHHTGGGCSEEEEEEE
T ss_pred             cccccHHHHHHHHHHHhhcCCceEEEEeec
Confidence            2    223444444433   1157877664

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=95.23  E-value=0.083  Score=45.72  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=64.9

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      ++++.+||=+|.|. |..+..+++. |+ +|++++.+++..+.+++. . .++.      .+..+.+..+..+.||+|+.
T Consensus        39 ~~~~~~vLDiGcG~-G~~~~~l~~~-~~-~v~gvD~s~~~~~~a~~~-~-~~~~------~d~~~~~~~~~~~~fD~i~~  107 (240)
T 3dli_A           39 FKGCRRVLDIGCGR-GEFLELCKEE-GI-ESIGVDINEDMIKFCEGK-F-NVVK------SDAIEYLKSLPDKYLDGVMI  107 (240)
T ss_dssp             TTTCSCEEEETCTT-THHHHHHHHH-TC-CEEEECSCHHHHHHHHTT-S-EEEC------SCHHHHHHTSCTTCBSEEEE
T ss_pred             hcCCCeEEEEeCCC-CHHHHHHHhC-CC-cEEEEECCHHHHHHHHhh-c-ceee------ccHHHHhhhcCCCCeeEEEE
Confidence            56789999998754 5555666665 87 899999999988888775 2 2322      23333333333448999986


Q ss_pred             ccC-----C---HHHHHHHHHHhhcCCceEEEEcc
Q 016507          279 CVG-----L---ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       279 ~~g-----~---~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ...     .   ...+..+.+.|+++ |.++....
T Consensus       108 ~~~l~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  141 (240)
T 3dli_A          108 SHFVEHLDPERLFELLSLCYSKMKYS-SYIVIESP  141 (240)
T ss_dssp             ESCGGGSCGGGHHHHHHHHHHHBCTT-CCEEEEEE
T ss_pred             CCchhhCCcHHHHHHHHHHHHHcCCC-cEEEEEeC
Confidence            432     1   24478889999997 99887643

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.23  E-value=0.07  Score=49.04  Aligned_cols=89  Identities=18%  Similarity=0.065  Sum_probs=56.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc----hHHHHHH---HcCCcEE-EcCCCCCCccHHHHHHhhcCCC
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIGK---RFGVTEF-VNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~----~~~~~~~---~lga~~v-~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      ..+|||+|+ |.+|...++.+...|+ +|+++++++    ++.+.+.   ..++..+ .|..+  .+.+.+.+.+.   +
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~-~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d--~~~l~~~~~~~---~   83 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHR-PTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINE--QEAMEKILKEH---E   83 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTC-CEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTC--HHHHHHHHHHT---T
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCC-CEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCC--HHHHHHHHhhC---C
Confidence            357999998 9999999998888898 899998876    4444333   3455433 23222  12333333322   8


Q ss_pred             ccEEEEccCCH--HHHHHHHHHhhcC
Q 016507          273 ADYCFECVGLA--SLVQEAYACCRKG  296 (388)
Q Consensus       273 ~dvvid~~g~~--~~~~~~~~~l~~~  296 (388)
                      +|+||.+.+..  .....+++.+...
T Consensus        84 ~d~Vi~~a~~~n~~~~~~l~~aa~~~  109 (346)
T 3i6i_A           84 IDIVVSTVGGESILDQIALVKAMKAV  109 (346)
T ss_dssp             CCEEEECCCGGGGGGHHHHHHHHHHH
T ss_pred             CCEEEECCchhhHHHHHHHHHHHHHc
Confidence            99999999853  2234555555553

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.22  E-value=0.054  Score=47.60  Aligned_cols=79  Identities=23%  Similarity=0.334  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH-HHHHH----cCCcE-E--EcCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF-EIGKR----FGVTE-F--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~-~~~~~----lga~~-v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      .+.+|||+|+ |.+|.+.++.+...|+ +|++++++.++. +.++.    .+... .  .|-.+  .+.+.+.+.+..  
T Consensus        13 ~~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~--~~~~~~~~~~~~~~   89 (265)
T 1h5q_A           13 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN--TDIVTKTIQQIDAD   89 (265)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCC--HHHHHHHHHHHHHh
Confidence            4578999987 9999999998888899 899998865433 22222    24322 2  23333  122333333321  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|++|++.|.
T Consensus        90 ~~~id~li~~Ag~  102 (265)
T 1h5q_A           90 LGPISGLIANAGV  102 (265)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            2379999999874

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.22  E-value=0.034  Score=47.65  Aligned_cols=101  Identities=14%  Similarity=0.135  Sum_probs=66.4

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHH----cCCcE---EEcCCCCCCccHHHHHHh
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVTE---FVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~----lga~~---v~~~~~~~~~~~~~~i~~  267 (388)
                      .....++.+||-+|.|. |..++.+++..+ ..+|++++.+++..+.+++    .|...   ++.      .+..+.+..
T Consensus        59 l~~~~~~~~vLdiG~G~-G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~------~d~~~~~~~  131 (225)
T 3tr6_A           59 LVKLMQAKKVIDIGTFT-GYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRL------SPAKDTLAE  131 (225)
T ss_dssp             HHHHHTCSEEEEECCTT-SHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE------SCHHHHHHH
T ss_pred             HHHhhCCCEEEEeCCcc-hHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEe------CCHHHHHHH
Confidence            34456788999998865 778888888753 3399999999988777664    34421   222      223333333


Q ss_pred             hcC----CCccEEEEccCC---HHHHHHHHHHhhcCCceEEEEc
Q 016507          268 MTD----GGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       268 ~~~----g~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ...    +.||+|+-....   ...+..+.+.|+++ |.++...
T Consensus       132 ~~~~~~~~~fD~v~~~~~~~~~~~~l~~~~~~L~pg-G~lv~~~  174 (225)
T 3tr6_A          132 LIHAGQAWQYDLIYIDADKANTDLYYEESLKLLREG-GLIAVDN  174 (225)
T ss_dssp             HHTTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             hhhccCCCCccEEEECCCHHHHHHHHHHHHHhcCCC-cEEEEeC
Confidence            322    479999843332   23367888999997 8887643

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.22  E-value=0.2  Score=46.43  Aligned_cols=132  Identities=9%  Similarity=-0.006  Sum_probs=77.1

Q ss_pred             CEEEEEccchhHH-HHHHHHHHcCCcEEEEEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          203 STVVIFGLGSIGL-AVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       203 ~~VlI~Gag~vG~-~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      =+|.|+|.|.++. ..+..++..+++-+.+.++++++.+ +++++|...++       .++.+.+.+   ..+|+|+-|+
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~-------~~~~~ll~~---~~vD~V~I~t   96 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRI-------ATAEEILED---ENIGLIVSAA   96 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEE-------SCHHHHHTC---TTCCEEEECC
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCccc-------CCHHHHhcC---CCCCEEEEeC
Confidence            4899999987774 3444555678833445566766654 45667754444       234333322   2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH------H-hcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV------L-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~------~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      ......+.+..++..  |+=|++.     +++..+....      . .+++.+.-.....+ ....++.+.+++.+|.+
T Consensus        97 p~~~H~~~~~~al~a--GkhVl~E-----KPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~-~~p~~~~~k~~i~~g~i  167 (361)
T 3u3x_A           97 VSSERAELAIRAMQH--GKDVLVD-----KPGMTSFDQLAKLRRVQAETGRIFSILYSEHF-ESPATVKAGELVAAGAI  167 (361)
T ss_dssp             CHHHHHHHHHHHHHT--TCEEEEE-----SCSCSSHHHHHHHHHHHHTTCCCEEEECHHHH-TCHHHHHHHHHHHTTTT
T ss_pred             ChHHHHHHHHHHHHC--CCeEEEe-----CCCCCCHHHHHHHHHHHHHcCCEEEEechHhh-CCHHHHHHHHHHHcCCC
Confidence            988778888888887  5555553     3344443321      1 22333322211111 01346777788888854

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.21  E-value=0.0082  Score=54.58  Aligned_cols=115  Identities=15%  Similarity=0.152  Sum_probs=70.9

Q ss_pred             ccccchhhhhHHHHHHh--------cC-CCCCCEEEEEccc-hhHHHHHHHHHHcCCcEEEEEcCCchHH-HHHHHcCCc
Q 016507          180 CLLSCGVSTGVGAAWRT--------AN-VEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKF-EIGKRFGVT  248 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~--------~~-~~~~~~VlI~Gag-~vG~~ai~la~~~g~~~Vi~~~~~~~~~-~~~~~lga~  248 (388)
                      ..+||+...+...+.+.        .+ --.|.+|+|+|+| .+|..+++++...|+ .|++++++..+. ++...++..
T Consensus       146 ~~~PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gA-tVtv~nR~~~~l~~ra~~la~~  224 (320)
T 1edz_A          146 SILPCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGA-TVYSVDVNNIQKFTRGESLKLN  224 (320)
T ss_dssp             CCCCHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSC-EEEEECSSEEEEEESCCCSSCC
T ss_pred             CcCCCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCC-EEEEEeCchHHHHhHHHHHhhh
Confidence            45676666665544331        23 3468999999997 569999999999999 899988764322 222223211


Q ss_pred             -EEE---c-CCCCCCccHHHHHHhhcCCCccEEEEccCCHHH-HHHHHHHhhcCCceEEEEccC
Q 016507          249 -EFV---N-SKNCGDKSVSQIIIDMTDGGADYCFECVGLASL-VQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       249 -~v~---~-~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~-~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       +..   . .+.   .++.+.++     .+|+||.++|.+.. +..  ..++++ ..++.+|..
T Consensus       225 ~~~~t~~~~t~~---~~L~e~l~-----~ADIVIsAtg~p~~vI~~--e~vk~G-avVIDVgi~  277 (320)
T 1edz_A          225 KHHVEDLGEYSE---DLLKKCSL-----DSDVVITGVPSENYKFPT--EYIKEG-AVCINFACT  277 (320)
T ss_dssp             CCEEEEEEECCH---HHHHHHHH-----HCSEEEECCCCTTCCBCT--TTSCTT-EEEEECSSS
T ss_pred             cccccccccccH---hHHHHHhc-----cCCEEEECCCCCcceeCH--HHcCCC-eEEEEcCCC
Confidence             000   0 000   23444443     68999999998752 222  236776 788888864

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=95.21  E-value=0.11  Score=50.75  Aligned_cols=79  Identities=19%  Similarity=0.244  Sum_probs=51.5

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH----H---HHHHHcCCcEE---EcCCCCCCccHHHHHHh
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK----F---EIGKRFGVTEF---VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~----~---~~~~~lga~~v---~~~~~~~~~~~~~~i~~  267 (388)
                      +.++.+|||+|+ |.+|...++.+...|+++|+.+.++...    .   +.++..|....   .|-.+  .+.+.+.+.+
T Consensus       256 ~~~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd--~~~v~~~~~~  333 (511)
T 2z5l_A          256 WQPSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAE--RDALAALVTA  333 (511)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSC--HHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCC--HHHHHHHHhc
Confidence            467889999987 9999999988888898678888887532    1   22334454322   23332  1223333322


Q ss_pred             hcCCCccEEEEccCC
Q 016507          268 MTDGGADYCFECVGL  282 (388)
Q Consensus       268 ~~~g~~dvvid~~g~  282 (388)
                         +++|+||++.|.
T Consensus       334 ---~~ld~VVh~AGv  345 (511)
T 2z5l_A          334 ---YPPNAVFHTAGI  345 (511)
T ss_dssp             ---SCCSEEEECCCC
T ss_pred             ---CCCcEEEECCcc
Confidence               479999999874

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=95.17  E-value=0.045  Score=48.13  Aligned_cols=78  Identities=12%  Similarity=0.129  Sum_probs=49.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHH---cCCcEEEEEcCCchHHHHHH-Hc-----CCcE-E--EcCCCCCCccHHHHHHh
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARL---CGATRIIGVDVISEKFEIGK-RF-----GVTE-F--VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~---~g~~~Vi~~~~~~~~~~~~~-~l-----ga~~-v--~~~~~~~~~~~~~~i~~  267 (388)
                      .+.++||+|+ |.+|.+.++.+..   .|+ +|+++++++++.+.+. .+     +... .  .|-.+  .+.+.+.+.+
T Consensus         5 ~~k~~lVTGas~gIG~~ia~~l~~~~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~   81 (259)
T 1oaa_A            5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGT--EAGVQRLLSA   81 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTS--HHHHHHHHHH
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHhhcCCC-eEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCC--HHHHHHHHHH
Confidence            3568899987 9999998887776   899 9999999887655432 22     3221 2  23333  1233333333


Q ss_pred             hc----CCCcc--EEEEccC
Q 016507          268 MT----DGGAD--YCFECVG  281 (388)
Q Consensus       268 ~~----~g~~d--vvid~~g  281 (388)
                      ..    .|++|  +++++.|
T Consensus        82 ~~~~~~~g~~d~~~lvnnAg  101 (259)
T 1oaa_A           82 VRELPRPEGLQRLLLINNAA  101 (259)
T ss_dssp             HHHSCCCTTCCEEEEEECCC
T ss_pred             HHhccccccCCccEEEECCc
Confidence            32    23678  9999876

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=95.17  E-value=0.097  Score=48.08  Aligned_cols=98  Identities=18%  Similarity=0.227  Sum_probs=65.3

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc------CC--c--EEEcCCCCCCccHHHHHHhh
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF------GV--T--EFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l------ga--~--~v~~~~~~~~~~~~~~i~~~  268 (388)
                      ...+.+||++|.|. |..+..+++..+..+|++++.+++-.+.+++.      |.  .  .++.      .+..+.+...
T Consensus       118 ~~~~~~VLdIG~G~-G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~------~D~~~~l~~~  190 (334)
T 1xj5_A          118 IPNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNA  190 (334)
T ss_dssp             SSCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTS
T ss_pred             CCCCCEEEEECCCc-cHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEE------CCHHHHHHhc
Confidence            45678999998754 66677777766544999999999888777652      11  1  1222      2344444433


Q ss_pred             cCCCccEEEEccC----------CHHHHHHHHHHhhcCCceEEEEc
Q 016507          269 TDGGADYCFECVG----------LASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       269 ~~g~~dvvid~~g----------~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ..+.||+|+--..          ....+..+.+.|+++ |.++.-.
T Consensus       191 ~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~  235 (334)
T 1xj5_A          191 AEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQA  235 (334)
T ss_dssp             CTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEEC
T ss_pred             cCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCC-cEEEEec
Confidence            3348999985322          234578899999997 9988763

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=95.16  E-value=0.043  Score=49.12  Aligned_cols=95  Identities=16%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-----CC---------c--EEEcCCCCCCccHH
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----GV---------T--EFVNSKNCGDKSVS  262 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-----ga---------~--~v~~~~~~~~~~~~  262 (388)
                      ...+.+||++|+|. |..+..+++. +..+|++++.+++-.+.+++.     +.         .  .++.      .+..
T Consensus        73 ~~~~~~VLdiG~G~-G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~------~D~~  144 (281)
T 1mjf_A           73 HPKPKRVLVIGGGD-GGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI------GDGF  144 (281)
T ss_dssp             SSCCCEEEEEECTT-SHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE------SCHH
T ss_pred             CCCCCeEEEEcCCc-CHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEE------CchH
Confidence            34678999998765 6667777777 666999999999888887753     21         1  1222      2233


Q ss_pred             HHHHhhcCCCccEEEEccC----------CHHHHHHHHHHhhcCCceEEEEc
Q 016507          263 QIIIDMTDGGADYCFECVG----------LASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       263 ~~i~~~~~g~~dvvid~~g----------~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +.+..  .+.||+|+--..          ....++.+.+.|+++ |.++...
T Consensus       145 ~~l~~--~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pg-G~lv~~~  193 (281)
T 1mjf_A          145 EFIKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQA  193 (281)
T ss_dssp             HHHHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             HHhcc--cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCC-cEEEEEc
Confidence            33433  448999975333          234478889999997 9988764

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=95.15  E-value=0.058  Score=46.86  Aligned_cols=98  Identities=17%  Similarity=0.245  Sum_probs=64.2

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHH----cCCcE---EEcCCCCCCccHHHHHHh
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTE---FVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~----lga~~---v~~~~~~~~~~~~~~i~~  267 (388)
                      ....++.+||-+|.|. |..++.+++.+  +. +|++++.+++..+.+++    .|...   ++.      .+..+.+..
T Consensus        66 ~~~~~~~~VLeiG~G~-G~~~~~la~~~~~~~-~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~------gda~~~l~~  137 (237)
T 3c3y_A           66 LKLVNAKKTIEVGVFT-GYSLLLTALSIPDDG-KITAIDFDREAYEIGLPFIRKAGVEHKINFIE------SDAMLALDN  137 (237)
T ss_dssp             HHHTTCCEEEEECCTT-SHHHHHHHHHSCTTC-EEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE------SCHHHHHHH
T ss_pred             HHhhCCCEEEEeCCCC-CHHHHHHHHhCCCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE------cCHHHHHHH
Confidence            3456778999998754 77777888875  45 99999999988877764    35421   222      223333333


Q ss_pred             hc-----CCCccEEEEccCC---HHHHHHHHHHhhcCCceEEEE
Q 016507          268 MT-----DGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       268 ~~-----~g~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      +.     .+.||+||--...   ...++.+.+.|+++ |.++.-
T Consensus       138 l~~~~~~~~~fD~I~~d~~~~~~~~~l~~~~~~L~pG-G~lv~d  180 (237)
T 3c3y_A          138 LLQGQESEGSYDFGFVDADKPNYIKYHERLMKLVKVG-GIVAYD  180 (237)
T ss_dssp             HHHSTTCTTCEEEEEECSCGGGHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             HHhccCCCCCcCEEEECCchHHHHHHHHHHHHhcCCC-eEEEEe
Confidence            31     3479999854332   23477889999997 877654

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=95.15  E-value=0.017  Score=50.62  Aligned_cols=75  Identities=21%  Similarity=0.218  Sum_probs=49.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhc--CCCccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT--DGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~--~g~~dvvi  277 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++++++.+.+.  +  ...|-.+  .+.+.+.+.+..  .+++|++|
T Consensus        14 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~--~--~~~D~~~--~~~~~~~~~~~~~~~g~id~lv   86 (247)
T 1uzm_A           14 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLF--G--VEVDVTD--SDAVDRAFTAVEEHQGPVEVLV   86 (247)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSE--E--EECCTTC--HHHHHHHHHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHhc--C--eeccCCC--HHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999987 9999999998888899 8999988776543322  1  2234333  122322222221  13799999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      ++.|.
T Consensus        87 ~~Ag~   91 (247)
T 1uzm_A           87 SNAGL   91 (247)
T ss_dssp             EECSC
T ss_pred             ECCCC
Confidence            99874

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.15  E-value=0.042  Score=50.29  Aligned_cols=71  Identities=14%  Similarity=0.126  Sum_probs=47.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|||+|+ |.+|...++.+...|+ +|+++++++.+.+.+...++..+ .|-.+      .+.+.+... ++|+||++.+
T Consensus        15 ~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d------~~~~~~~~~-~~d~vih~a~   86 (342)
T 2x4g_A           15 KYAVLGATGLLGHHAARAIRAAGH-DLVLIHRPSSQIQRLAYLEPECRVAEMLD------HAGLERALR-GLDGVIFSAG   86 (342)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTC-EEEEEECTTSCGGGGGGGCCEEEECCTTC------HHHHHHHTT-TCSEEEEC--
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCC-EEEEEecChHhhhhhccCCeEEEEecCCC------HHHHHHHHc-CCCEEEECCc
Confidence            7999997 9999999998888898 99999988766544443344332 22222      223444333 6999999987


Q ss_pred             C
Q 016507          282 L  282 (388)
Q Consensus       282 ~  282 (388)
                      .
T Consensus        87 ~   87 (342)
T 2x4g_A           87 Y   87 (342)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=95.15  E-value=0.023  Score=50.23  Aligned_cols=76  Identities=16%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-EEcCCCCCCccHHHHHHhhcC--CCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-FVNSKNCGDKSVSQIIIDMTD--GGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-v~~~~~~~~~~~~~~i~~~~~--g~~dvv  276 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++.++.+..   .+.. ..|-.+  .+.+.+.+.+...  |++|++
T Consensus        27 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~---~~~~~~~Dv~d--~~~v~~~~~~~~~~~g~iD~l  100 (260)
T 3un1_A           27 QQKVVVITGASQGIGAGLVRAYRDRNY-RVVATSRSIKPSADP---DIHTVAGDISK--PETADRIVREGIERFGRIDSL  100 (260)
T ss_dssp             TCCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSCCCCSST---TEEEEESCTTS--HHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChhhcccC---ceEEEEccCCC--HHHHHHHHHHHHHHCCCCCEE
Confidence            4678999987 9999999998888899 999998876543211   1111 123222  1223222322211  379999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      +++.|.
T Consensus       101 v~nAg~  106 (260)
T 3un1_A          101 VNNAGV  106 (260)
T ss_dssp             EECCCC
T ss_pred             EECCCC
Confidence            999873

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.14  E-value=0.057  Score=47.98  Aligned_cols=79  Identities=14%  Similarity=0.198  Sum_probs=49.4

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHcCCcEEEEEcCCch---HHHHHHH-cCCcEE--EcCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGKR-FGVTEF--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga---g~vG~~ai~la~~~g~~~Vi~~~~~~~---~~~~~~~-lga~~v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      .+.++||+|+   |.+|.++++.+...|+ +|++++++++   ..+.+.+ .+...+  .|-.+  .+.+.+.+.+..  
T Consensus         5 ~~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~--~~~v~~~~~~~~~~   81 (275)
T 2pd4_A            5 KGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSK--EEHFKSLYNSVKKD   81 (275)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999985   6999999998888899 8999988775   2232222 332122  23333  122332222221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|++|++.|.
T Consensus        82 ~g~id~lv~nAg~   94 (275)
T 2pd4_A           82 LGSLDFIVHSVAF   94 (275)
T ss_dssp             TSCEEEEEECCCC
T ss_pred             cCCCCEEEECCcc
Confidence            2379999999873

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=95.13  E-value=0.062  Score=46.58  Aligned_cols=78  Identities=18%  Similarity=0.224  Sum_probs=48.7

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEE-EcCCchHHHHHH----HcCCcE-E--EcCCCCCCccHHHHHHhhc--C
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIG-VDVISEKFEIGK----RFGVTE-F--VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~-~~~~~~~~~~~~----~lga~~-v--~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      |.+|||+|+ |.+|...++.+...|+ +|++ ..+++++.+.+.    ..+... .  .|-.+  .+.+.+.+.+..  .
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~-~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~~~~~   77 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK--EADVEAMMKTAIDAW   77 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS--HHHHHHHHHHHHHHS
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCC--HHHHHHHHHHHHHHc
Confidence            467899987 9999999998888999 8887 477766554332    234322 1  23332  122333333221  2


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +++|++|++.|.
T Consensus        78 g~id~li~~Ag~   89 (244)
T 1edo_A           78 GTIDVVVNNAGI   89 (244)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            379999998873

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.12  E-value=0.066  Score=48.13  Aligned_cols=92  Identities=14%  Similarity=0.172  Sum_probs=57.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-------hHHHHHH---HcCCcEE-EcCCCCCCccHHHHHHhhc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-------EKFEIGK---RFGVTEF-VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-------~~~~~~~---~lga~~v-~~~~~~~~~~~~~~i~~~~  269 (388)
                      +.+|||+|+ |.+|...++.+...|+ +|+++++++       ++.+.++   ..++..+ .|..+   .   +.+.+..
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d---~---~~l~~~~   74 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGN-PTYALVRKTITAANPETKEELIDNYQSLGVILLEGDIND---H---ETLVKAI   74 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTC-CEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTC---H---HHHHHHH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCC-cEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCC---H---HHHHHHH
Confidence            357999997 9999999988887898 888888876       5444333   3455433 23332   2   2333333


Q ss_pred             CCCccEEEEccCCH--HHHHHHHHHhhcC--CceEE
Q 016507          270 DGGADYCFECVGLA--SLVQEAYACCRKG--WGKTI  301 (388)
Q Consensus       270 ~g~~dvvid~~g~~--~~~~~~~~~l~~~--~G~~v  301 (388)
                      . ++|+||++.+..  .....+++.+...  -.+++
T Consensus        75 ~-~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  109 (307)
T 2gas_A           75 K-QVDIVICAAGRLLIEDQVKIIKAIKEAGNVKKFF  109 (307)
T ss_dssp             T-TCSEEEECSSSSCGGGHHHHHHHHHHHCCCSEEE
T ss_pred             h-CCCEEEECCcccccccHHHHHHHHHhcCCceEEe
Confidence            2 699999998853  1134445554442  13565

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=95.11  E-value=0.058  Score=48.21  Aligned_cols=79  Identities=16%  Similarity=0.213  Sum_probs=49.0

Q ss_pred             CCCEEEEEcc---chhHHHHHHHHHHcCCcEEEEEcCCch---HHHHHHH-cCCcEE--EcCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL---GSIGLAVAEGARLCGATRIIGVDVISE---KFEIGKR-FGVTEF--VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga---g~vG~~ai~la~~~g~~~Vi~~~~~~~---~~~~~~~-lga~~v--~~~~~~~~~~~~~~i~~~~--  269 (388)
                      .+.++||+|+   |.+|.++++.+...|+ +|++++++++   ..+.+.. .+....  .|-.+  .+.+.+.+.+..  
T Consensus        20 ~~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~   96 (285)
T 2p91_A           20 EGKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSL--DEDIKNLKKFLEEN   96 (285)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence            4678999985   6999999998888899 8999988775   2222222 232122  23333  122322222221  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .+++|++|++.|.
T Consensus        97 ~g~iD~lv~~Ag~  109 (285)
T 2p91_A           97 WGSLDIIVHSIAY  109 (285)
T ss_dssp             TSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            2479999999873

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=95.10  E-value=0.046  Score=48.35  Aligned_cols=94  Identities=12%  Similarity=0.108  Sum_probs=66.7

Q ss_pred             ccccchhhhhHHHHHHhcCCCCCCEEEEEccc-hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGLG-SIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag-~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  258 (388)
                      ..+||+.......+ +..+ -.|.+++|+|.| .+|..+++++...|+ +|+++.+.                   .   
T Consensus       130 ~~~PcTp~gv~~lL-~~~~-l~Gk~vvVvG~s~iVG~plA~lL~~~gA-tVtv~~~~-------------------t---  184 (276)
T 3ngx_A          130 FLVPATPRAVIDIM-DYYG-YHENTVTIVNRSPVVGRPLSMMLLNRNY-TVSVCHSK-------------------T---  184 (276)
T ss_dssp             SSCCHHHHHHHHHH-HHHT-CCSCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTT-------------------C---
T ss_pred             CCCCCcHHHHHHHH-HHhC-cCCCEEEEEcCChHHHHHHHHHHHHCCC-eEEEEeCC-------------------c---
Confidence            34666666666544 4444 789999999985 689999999999999 88887542                   1   


Q ss_pred             ccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          259 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       259 ~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .++.+.++     .+|+||.++|.+..+..  ..++++ ..++.+|..
T Consensus       185 ~~L~~~~~-----~ADIVI~Avg~p~~I~~--~~vk~G-avVIDvgi~  224 (276)
T 3ngx_A          185 KDIGSMTR-----SSKIVVVAVGRPGFLNR--EMVTPG-SVVIDVGIN  224 (276)
T ss_dssp             SCHHHHHH-----HSSEEEECSSCTTCBCG--GGCCTT-CEEEECCCE
T ss_pred             ccHHHhhc-----cCCEEEECCCCCccccH--hhccCC-cEEEEeccC
Confidence            34555544     57999999998753322  446886 888888864

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=95.09  E-value=0.069  Score=46.30  Aligned_cols=79  Identities=15%  Similarity=0.146  Sum_probs=49.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCc------EEEEEcCCchHHHHHHH-c---CCcE-E--EcCCCCCCccHHHHHHh
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGAT------RIIGVDVISEKFEIGKR-F---GVTE-F--VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~------~Vi~~~~~~~~~~~~~~-l---ga~~-v--~~~~~~~~~~~~~~i~~  267 (388)
                      +.+|||+|+ |.+|...++.+...|+.      +|+++++++++.+.+.. +   +... .  .|-.+  .+.+.+.+.+
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~--~~~v~~~~~~   79 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD--MADVRRLTTH   79 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS--HHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCC--HHHHHHHHHH
Confidence            467999987 99999988887777874      78888888776654332 2   3221 2  23332  1223333322


Q ss_pred             hc--CCCccEEEEccCC
Q 016507          268 MT--DGGADYCFECVGL  282 (388)
Q Consensus       268 ~~--~g~~dvvid~~g~  282 (388)
                      ..  .+++|++|++.|.
T Consensus        80 ~~~~~g~id~li~~Ag~   96 (244)
T 2bd0_A           80 IVERYGHIDCLVNNAGV   96 (244)
T ss_dssp             HHHHTSCCSEEEECCCC
T ss_pred             HHHhCCCCCEEEEcCCc
Confidence            21  2379999999873

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.09  E-value=0.054  Score=48.43  Aligned_cols=71  Identities=20%  Similarity=0.126  Sum_probs=48.9

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|.|+|+|.+|...+..+.. |. +|++.++++++.+.+.+.|+.. .+  .   .+.   +     ...|+||.|+..+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~-~V~~~~~~~~~~~~~~~~g~~~-~~--~---~~~---~-----~~~D~vi~~v~~~   66 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RF-PTLVWNRTFEKALRHQEEFGSE-AV--P---LER---V-----AEARVIFTCLPTT   66 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TS-CEEEECSSTHHHHHHHHHHCCE-EC--C---GGG---G-----GGCSEEEECCSSH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHHCCCcc-cC--H---HHH---H-----hCCCEEEEeCCCh
Confidence            58899999999988877777 98 8999999988887776655432 11  1   111   1     1578888888766


Q ss_pred             HHHHHHH
Q 016507          284 SLVQEAY  290 (388)
Q Consensus       284 ~~~~~~~  290 (388)
                      ..+...+
T Consensus        67 ~~~~~v~   73 (289)
T 2cvz_A           67 REVYEVA   73 (289)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4344443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.08  E-value=0.18  Score=46.76  Aligned_cols=91  Identities=16%  Similarity=0.175  Sum_probs=61.9

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      .-+|.|+|.|.+|...+..+...|. +|++.++++++.+.+.+.|+...        .++.+.+...  ..+|+||-|+.
T Consensus        22 ~mkIgiIGlG~mG~~~A~~L~~~G~-~V~v~dr~~~~~~~l~~~g~~~~--------~s~~e~~~~a--~~~DvVi~~vp   90 (358)
T 4e21_A           22 SMQIGMIGLGRMGADMVRRLRKGGH-ECVVYDLNVNAVQALEREGIAGA--------RSIEEFCAKL--VKPRVVWLMVP   90 (358)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHTTTCBCC--------SSHHHHHHHS--CSSCEEEECSC
T ss_pred             CCEEEEECchHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHCCCEEe--------CCHHHHHhcC--CCCCEEEEeCC
Confidence            3589999999999999988888898 99999999999888877665311        2334433321  14688988888


Q ss_pred             CHHHHHHHHHH----hhcCCceEEEEcc
Q 016507          282 LASLVQEAYAC----CRKGWGKTIVLGV  305 (388)
Q Consensus       282 ~~~~~~~~~~~----l~~~~G~~v~~g~  305 (388)
                      ... +...++.    +.++ ..++..+.
T Consensus        91 ~~~-v~~vl~~l~~~l~~g-~iiId~st  116 (358)
T 4e21_A           91 AAV-VDSMLQRMTPLLAAN-DIVIDGGN  116 (358)
T ss_dssp             GGG-HHHHHHHHGGGCCTT-CEEEECSS
T ss_pred             HHH-HHHHHHHHHhhCCCC-CEEEeCCC
Confidence            763 4444443    3343 44554443

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=95.06  E-value=0.077  Score=46.24  Aligned_cols=79  Identities=23%  Similarity=0.271  Sum_probs=48.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC-CchHHHH----HHHcCCcEE---EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV-ISEKFEI----GKRFGVTEF---VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~-~~~~~~~----~~~lga~~v---~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|+++++ ++++.+.    ++..+....   .|-.+  .+++.+.+.+... 
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~~~~~   79 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGY-NVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVAD--ADEVKAMIKEVVSQ   79 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            3578999987 9999999998888999 8877765 4344333    223344322   23222  1223332322211 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       +++|+++++.|.
T Consensus        80 ~g~id~lv~nAg~   92 (246)
T 3osu_A           80 FGSLDVLVNNAGI   92 (246)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             379999999874

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=95.06  E-value=0.071  Score=48.10  Aligned_cols=92  Identities=15%  Similarity=0.114  Sum_probs=58.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      .+|||+|+ |.+|..+++.+...|+ +|+++++++.+.+ +.  ++..+ .-+    -. .+.+.+... ++|+||++.+
T Consensus         3 ~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~-~~--~~~~~-~~D----l~-~~~~~~~~~-~~d~Vih~a~   71 (311)
T 3m2p_A            3 LKIAVTGGTGFLGQYVVESIKNDGN-TPIILTRSIGNKA-IN--DYEYR-VSD----YT-LEDLINQLN-DVDAVVHLAA   71 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCC--------CCEEE-ECC----CC-HHHHHHHTT-TCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCC-EEEEEeCCCCccc-CC--ceEEE-Ecc----cc-HHHHHHhhc-CCCEEEEccc
Confidence            58999997 9999999999988899 9999998865554 33  34322 222    22 455555544 8999999987


Q ss_pred             CH-------------HHHHHHHHHhhcC-CceEEEEcc
Q 016507          282 LA-------------SLVQEAYACCRKG-WGKTIVLGV  305 (388)
Q Consensus       282 ~~-------------~~~~~~~~~l~~~-~G~~v~~g~  305 (388)
                      ..             .....+++.+... -.+++.++.
T Consensus        72 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS  109 (311)
T 3m2p_A           72 TRGSQGKISEFHDNEILTQNLYDACYENNISNIVYAST  109 (311)
T ss_dssp             CCCSSSCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcc
Confidence            42             1123445554442 136777664

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=95.05  E-value=0.12  Score=50.02  Aligned_cols=82  Identities=17%  Similarity=0.169  Sum_probs=53.0

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH----H---HHHHHcCCcE-EE--cCCCCCCccHHHHHHh
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK----F---EIGKRFGVTE-FV--NSKNCGDKSVSQIIID  267 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~----~---~~~~~lga~~-v~--~~~~~~~~~~~~~i~~  267 (388)
                      +.++.++||+|+ |.+|...++.+...|+++|+.+.++...    .   +.++..|... ++  |-.+  .+.+.+.+.+
T Consensus       223 ~~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d--~~~v~~~~~~  300 (486)
T 2fr1_A          223 WKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD--RESVRELLGG  300 (486)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCC--HHHHHHHHHH
Confidence            567899999987 9999998888877798668888887642    1   2234456532 22  3222  1333444433


Q ss_pred             hcC-CCccEEEEccCC
Q 016507          268 MTD-GGADYCFECVGL  282 (388)
Q Consensus       268 ~~~-g~~dvvid~~g~  282 (388)
                      ... +++|+||++.|.
T Consensus       301 i~~~g~ld~VIh~AG~  316 (486)
T 2fr1_A          301 IGDDVPLSAVFHAAAT  316 (486)
T ss_dssp             SCTTSCEEEEEECCCC
T ss_pred             HHhcCCCcEEEECCcc
Confidence            311 278999999884

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=95.04  E-value=0.048  Score=48.34  Aligned_cols=94  Identities=23%  Similarity=0.298  Sum_probs=64.2

Q ss_pred             cccchhhhhHHHHHHhcC-CCCCCEEEEEccc-hhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          181 LLSCGVSTGVGAAWRTAN-VEVGSTVVIFGLG-SIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~-~~~~~~VlI~Gag-~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      .+||+...+...+ +..+ --.|.+++|+|+| .+|..+++++...  |+ +|+++.+..                    
T Consensus       137 ~~PcTp~gi~~ll-~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~a-tVtv~h~~t--------------------  194 (281)
T 2c2x_A          137 PLPCTPRGIVHLL-RRYDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENA-TVTLCHTGT--------------------  194 (281)
T ss_dssp             CCCHHHHHHHHHH-HHTTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCC-EEEEECTTC--------------------
T ss_pred             CCCChHHHHHHHH-HHcCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCC-EEEEEECch--------------------
Confidence            4565555555433 3334 3478999999997 5699999999888  78 888874321                    


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                        .++.+.++     .+|+||.++|.+..+  --+.++++ ..++.+|..
T Consensus       195 --~~L~~~~~-----~ADIVI~Avg~p~~I--~~~~vk~G-avVIDVgi~  234 (281)
T 2c2x_A          195 --RDLPALTR-----QADIVVAAVGVAHLL--TADMVRPG-AAVIDVGVS  234 (281)
T ss_dssp             --SCHHHHHT-----TCSEEEECSCCTTCB--CGGGSCTT-CEEEECCEE
T ss_pred             --hHHHHHHh-----hCCEEEECCCCCccc--CHHHcCCC-cEEEEccCC
Confidence              33444443     689999999988522  22346776 888888864

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.03  E-value=0.047  Score=49.97  Aligned_cols=76  Identities=18%  Similarity=0.215  Sum_probs=47.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHHH----cCCc-EEE--cCCCCCCccHHHHHHhhcCC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKR----FGVT-EFV--NSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~----lga~-~v~--~~~~~~~~~~~~~i~~~~~g  271 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|++++++.++.+ .++.    .+.. .++  |-.+  .+.+.+.+.+   +
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~~~~~~~~---~   77 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGY-DVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD--ERALARIFDA---H   77 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTC--HHHHHHHHHH---S
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCC-cEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCC--HHHHHHHHhc---c
Confidence            4568999997 9999999998888899 8999987654322 2211    1221 222  2222  1222222222   3


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|+||++.+.
T Consensus        78 ~~d~vih~A~~   88 (341)
T 3enk_A           78 PITAAIHFAAL   88 (341)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCcEEEECccc
Confidence            89999999874

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=95.02  E-value=0.094  Score=48.00  Aligned_cols=129  Identities=16%  Similarity=0.087  Sum_probs=80.2

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEE-EEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi-~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|.|+|.|.+|...+..++.. ++ +++ +.++++++.+ +++++|+..++       .++.+.+.+   ..+|+|+.|+
T Consensus         7 ~igiiG~G~~g~~~~~~l~~~~~~-~l~av~d~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~---~~~D~V~i~t   75 (330)
T 3e9m_A            7 RYGIMSTAQIVPRFVAGLRESAQA-EVRGIASRRLENAQKMAKELAIPVAY-------GSYEELCKD---ETIDIIYIPT   75 (330)
T ss_dssp             EEEECSCCTTHHHHHHHHHHSSSE-EEEEEBCSSSHHHHHHHHHTTCCCCB-------SSHHHHHHC---TTCSEEEECC
T ss_pred             EEEEECchHHHHHHHHHHHhCCCc-EEEEEEeCCHHHHHHHHHHcCCCcee-------CCHHHHhcC---CCCCEEEEcC
Confidence            789999999998877777664 66 565 5567777655 45567764332       234444332   2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------H-HhcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      ......+.+..++..+  +-+.+.     +++..+...      . -.+++.+.-...  +.....++.+.+++.+|.+
T Consensus        76 p~~~h~~~~~~al~~g--k~vl~E-----KP~~~~~~e~~~l~~~a~~~g~~~~v~~~--~r~~p~~~~~k~~i~~g~i  145 (330)
T 3e9m_A           76 YNQGHYSAAKLALSQG--KPVLLE-----KPFTLNAAEAEELFAIAQEQGVFLMEAQK--SVFLPITQKVKATIQEGGL  145 (330)
T ss_dssp             CGGGHHHHHHHHHHTT--CCEEEC-----SSCCSSHHHHHHHHHHHHHTTCCEEECCS--GGGCHHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHHCC--CeEEEe-----CCCCCCHHHHHHHHHHHHHcCCeEEEEEh--hhhCHHHHHHHHHHhCCCC
Confidence            9888788888888874  444443     333333332      1 123444432221  2223567888889988865

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=95.00  E-value=0.065  Score=47.65  Aligned_cols=96  Identities=18%  Similarity=0.255  Sum_probs=66.8

Q ss_pred             ccccchhhhhHHHHHHhcCC-CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTANV-EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~-~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  257 (388)
                      ..+||+.......+ +..++ -.|.+++|+|. +.+|..+++++...|+ .|+++.+.                   .  
T Consensus       139 ~~~PcTp~gv~~lL-~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gA-tVtv~hs~-------------------T--  195 (286)
T 4a5o_A          139 LLRPCTPKGIMTLL-ASTGADLYGMDAVVVGASNIVGRPMALELLLGGC-TVTVTHRF-------------------T--  195 (286)
T ss_dssp             SSCCHHHHHHHHHH-HHTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTC-EEEEECTT-------------------C--
T ss_pred             CCCCCCHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCC-eEEEEeCC-------------------C--
Confidence            34666655555533 44443 47999999997 5689999999999999 88887532                   1  


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                       .++.+.++     .+|+||.++|.+..+.  -+.++++ ..++.+|...
T Consensus       196 -~~L~~~~~-----~ADIVI~Avg~p~~I~--~~~vk~G-avVIDvgi~~  236 (286)
T 4a5o_A          196 -RDLADHVS-----RADLVVVAAGKPGLVK--GEWIKEG-AIVIDVGINR  236 (286)
T ss_dssp             -SCHHHHHH-----TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCSCS
T ss_pred             -cCHHHHhc-----cCCEEEECCCCCCCCC--HHHcCCC-eEEEEecccc
Confidence             23444443     6899999999875332  2456886 8888898643

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=94.98  E-value=0.081  Score=49.95  Aligned_cols=83  Identities=20%  Similarity=0.227  Sum_probs=52.1

Q ss_pred             cCC-CCCCEEEEEcc-chhHHHHHHHHHH-cCCcEEEEEcCCchHH----------------HHHHHcCCcEE-E--cCC
Q 016507          197 ANV-EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEKF----------------EIGKRFGVTEF-V--NSK  254 (388)
Q Consensus       197 ~~~-~~~~~VlI~Ga-g~vG~~ai~la~~-~g~~~Vi~~~~~~~~~----------------~~~~~lga~~v-~--~~~  254 (388)
                      ..+ +.+.++||+|+ +++|+++++.+.. .|+ +|++++++.+..                +.++..|.... +  |-.
T Consensus        55 ~~~~~~gKvaLVTGASsGIG~AiA~~LA~~~GA-~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvt  133 (422)
T 3s8m_A           55 GVRNDGPKKVLVIGASSGYGLASRITAAFGFGA-DTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAF  133 (422)
T ss_dssp             CCCSSSCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTT
T ss_pred             cccccCCCEEEEECCChHHHHHHHHHHHHhCCC-EEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCC
Confidence            345 35678899987 9999998877776 899 898887765321                34455565432 2  322


Q ss_pred             CCCCcc---HHHHHHhhcCCCccEEEEccCC
Q 016507          255 NCGDKS---VSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       255 ~~~~~~---~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +  .+.   +.+.+.+..+|++|+++++.|.
T Consensus       134 d--~~~v~~~v~~i~~~~~G~IDiLVNNAG~  162 (422)
T 3s8m_A          134 S--DAARAQVIELIKTEMGGQVDLVVYSLAS  162 (422)
T ss_dssp             S--HHHHHHHHHHHHHHSCSCEEEEEECCCC
T ss_pred             C--HHHHHHHHHHHHHHcCCCCCEEEEcCcc
Confidence            2  122   2233333332689999998875

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=94.98  E-value=0.054  Score=47.88  Aligned_cols=101  Identities=13%  Similarity=0.084  Sum_probs=64.6

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE--EcCCCCCCccHHHHHHhhcC
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF--VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v--~~~~~~~~~~~~~~i~~~~~  270 (388)
                      +.....+.++.+||=+|.|. |..++.+++. |+ +|++++.+++-.+.+++.-....  .+..+   .+.  .......
T Consensus        37 il~~l~l~~g~~VLDlGcGt-G~~a~~La~~-g~-~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~---~~~--~~~~~~~  108 (261)
T 3iv6_A           37 DIFLENIVPGSTVAVIGAST-RFLIEKALER-GA-SVTVFDFSQRMCDDLAEALADRCVTIDLLD---ITA--EIPKELA  108 (261)
T ss_dssp             HHHTTTCCTTCEEEEECTTC-HHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHTSSSCCEEEECC---TTS--CCCGGGT
T ss_pred             HHHhcCCCCcCEEEEEeCcc-hHHHHHHHhc-CC-EEEEEECCHHHHHHHHHHHHhccceeeeee---ccc--ccccccC
Confidence            44566788999999998865 7778888775 77 99999999998888876432211  11111   000  0000112


Q ss_pred             CCccEEEEccCC--------HHHHHHHHHHhhcCCceEEEE
Q 016507          271 GGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       271 g~~dvvid~~g~--------~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      +.||+|+-....        ...+..+.+.+ ++ |+++..
T Consensus       109 ~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PG-G~l~lS  147 (261)
T 3iv6_A          109 GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GS-GTVRAS  147 (261)
T ss_dssp             TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TT-SEEEEE
T ss_pred             CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cC-cEEEEE
Confidence            489999865321        12366777788 97 988754

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=94.97  E-value=0.066  Score=49.35  Aligned_cols=74  Identities=14%  Similarity=0.158  Sum_probs=48.1

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c----CCcEE-EcCCCCCCccHHHHHHhhcCC-Cc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GVTEF-VNSKNCGDKSVSQIIIDMTDG-GA  273 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l----ga~~v-~~~~~~~~~~~~~~i~~~~~g-~~  273 (388)
                      +.+|||+|+ |.+|...++.+...|+ +|+++++++.+.+.+.. +    ++..+ .|-.+   .   +.+.+...+ ++
T Consensus         9 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d---~---~~~~~~~~~~~~   81 (357)
T 1rkx_A            9 GKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD---Q---NKLLESIREFQP   81 (357)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC---H---HHHHHHHHHHCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCC-eEEEEeCCCcccchhhHhhccCCceEEEEccccC---H---HHHHHHHHhcCC
Confidence            568999997 9999999998888898 99999887654332221 1    22222 23222   2   223332223 69


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+||++.+.
T Consensus        82 d~vih~A~~   90 (357)
T 1rkx_A           82 EIVFHMAAQ   90 (357)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCCC
Confidence            999999883

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=94.96  E-value=0.11  Score=47.00  Aligned_cols=99  Identities=16%  Similarity=0.050  Sum_probs=64.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC--------C--cEEEcCCCCCCccHHHHHHhh
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG--------V--TEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg--------a--~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      ..++.+||++|.|. |..+..+++..+..+|++++.+++-.+.+++.-        .  -.++.      .+..+.+...
T Consensus        93 ~~~~~~VLdiG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~------~D~~~~~~~~  165 (304)
T 3bwc_A           93 HPKPERVLIIGGGD-GGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRV------GDGLAFVRQT  165 (304)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHSS
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEE------CcHHHHHHhc
Confidence            45678999998765 666777777655459999999998877776532        0  11222      2333333322


Q ss_pred             cCCCccEEEEccCC----------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          269 TDGGADYCFECVGL----------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       269 ~~g~~dvvid~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ..+.||+|+-....          ...+..+.+.|+++ |.++....
T Consensus       166 ~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~Lkpg-G~lv~~~~  211 (304)
T 3bwc_A          166 PDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPD-GICCNQGE  211 (304)
T ss_dssp             CTTCEEEEEEECC---------CCHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             cCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCC-cEEEEecC
Confidence            23489999853321          34477889999997 99887653

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=94.92  E-value=0.05  Score=48.39  Aligned_cols=101  Identities=11%  Similarity=0.054  Sum_probs=67.4

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHHc-----CCcE--EEcCCCCCCccHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRF-----GVTE--FVNSKNCGDKSVSQ  263 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~l-----ga~~--v~~~~~~~~~~~~~  263 (388)
                      +.....+.++++||-+|+| .|..+..+++..  +. +|++++.+++..+.+++.     |.+.  ++.. +     +.+
T Consensus       102 ~~~~~~~~~~~~VLD~G~G-~G~~~~~la~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~-d-----~~~  173 (275)
T 1yb2_A          102 IIMRCGLRPGMDILEVGVG-SGNMSSYILYALNGKG-TLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRS-D-----IAD  173 (275)
T ss_dssp             ----CCCCTTCEEEEECCT-TSHHHHHHHHHHTTSS-EEEEECSCHHHHHHHHHHHHTTSCCTTEEEECS-C-----TTT
T ss_pred             HHHHcCCCCcCEEEEecCC-CCHHHHHHHHHcCCCC-EEEEEECCHHHHHHHHHHHHhcCCCCcEEEEEC-c-----hhc
Confidence            4456678899999999886 477777888763  45 999999999888777653     4322  2221 1     111


Q ss_pred             HHHhhcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          264 IIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       264 ~i~~~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                         .+..+.||+|+-..... ..+..+.+.|+++ |.++....
T Consensus       174 ---~~~~~~fD~Vi~~~~~~~~~l~~~~~~Lkpg-G~l~i~~~  212 (275)
T 1yb2_A          174 ---FISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYLP  212 (275)
T ss_dssp             ---CCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEES
T ss_pred             ---cCcCCCccEEEEcCcCHHHHHHHHHHHcCCC-CEEEEEeC
Confidence               11123799998766544 4478899999997 98887753

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.91  E-value=0.049  Score=49.72  Aligned_cols=76  Identities=12%  Similarity=0.113  Sum_probs=47.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHHHc-CCcEE-EcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRF-GVTEF-VNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~l-ga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .+.+|||+|+ |.+|..+++.+...|+ +|++++++..... .+..+ ++..+ .|-.+  ...+.+.+.+.   ++|+|
T Consensus        19 ~~~~vlVTGasG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d--~~~~~~~~~~~---~~D~v   92 (330)
T 2pzm_A           19 SHMRILITGGAGCLGSNLIEHWLPQGH-EILVIDNFATGKREVLPPVAGLSVIEGSVTD--AGLLERAFDSF---KPTHV   92 (330)
T ss_dssp             TCCEEEEETTTSHHHHHHHHHHGGGTC-EEEEEECCSSSCGGGSCSCTTEEEEECCTTC--HHHHHHHHHHH---CCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCccchhhhhccCCceEEEeeCCC--HHHHHHHHhhc---CCCEE
Confidence            3568999997 9999999998888898 8999988543321 11222 22211 23222  12233333332   79999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.+.
T Consensus        93 ih~A~~   98 (330)
T 2pzm_A           93 VHSAAA   98 (330)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            999874

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=94.87  E-value=0.13  Score=48.54  Aligned_cols=129  Identities=14%  Similarity=0.099  Sum_probs=82.7

Q ss_pred             EEEEEccchhHHHHHHHHHHc---------CCcEEEE-EcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLC---------GATRIIG-VDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~---------g~~~Vi~-~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      +|.|+|.|.+|...+...+..         ++ +|++ .++++++.+ +++++|...++.       ++.+.+.+   ..
T Consensus        28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~-elvav~d~~~~~a~~~a~~~~~~~~y~-------d~~~ll~~---~~   96 (412)
T 4gqa_A           28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRP-HLYALADQDQAMAERHAAKLGAEKAYG-------DWRELVND---PQ   96 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEE-EEEEEECSSHHHHHHHHHHHTCSEEES-------SHHHHHHC---TT
T ss_pred             eEEEEcCcHHHHHHHHHHHhccccccccCCCe-EEEEEEcCCHHHHHHHHHHcCCCeEEC-------CHHHHhcC---CC
Confidence            789999999998766655532         45 5554 466666654 466788877652       34444432   28


Q ss_pred             ccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH-------HhcCcEEEEeeecCCCccCcHHHHHH
Q 016507          273 ADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV-------LHSGKILMGSLFGGLKAKSDIPILLK  345 (388)
Q Consensus       273 ~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-------~~~~~~i~g~~~~~~~~~~~~~~~~~  345 (388)
                      +|+|+-|+......+.+..+|..  |+=|++-     +++..+....       -.+++.+.-...  +.....++.+.+
T Consensus        97 vD~V~I~tp~~~H~~~~~~al~a--GkhVl~E-----KP~a~~~~ea~~l~~~a~~~g~~~~v~~~--~R~~p~~~~~k~  167 (412)
T 4gqa_A           97 VDVVDITSPNHLHYTMAMAAIAA--GKHVYCE-----KPLAVNEQQAQEMAQAARRAGVKTMVAFN--NIKTPAALLAKQ  167 (412)
T ss_dssp             CCEEEECSCGGGHHHHHHHHHHT--TCEEEEE-----SCSCSSHHHHHHHHHHHHHHTCCEEEECG--GGTSHHHHHHHH
T ss_pred             CCEEEECCCcHHHHHHHHHHHHc--CCCeEee-----cCCcCCHHHHHHHHHHHHHhCCeeeeccc--eecCHHHHHHHH
Confidence            99999999988878999999987  5555553     4444444432       123444332221  222356778888


Q ss_pred             HHhCCCC
Q 016507          346 RYMDKEL  352 (388)
Q Consensus       346 ~~~~~~~  352 (388)
                      ++.+|.+
T Consensus       168 ~i~~G~i  174 (412)
T 4gqa_A          168 IIARGDI  174 (412)
T ss_dssp             HHHHTTT
T ss_pred             HHhcCCc
Confidence            8888865

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=94.87  E-value=0.058  Score=47.49  Aligned_cols=77  Identities=16%  Similarity=0.167  Sum_probs=48.0

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-hHHHHHHH----cCCcE-E--EcCCCCCCccHHHHHHhhcC--
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIGKR----FGVTE-F--VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~~~~~----lga~~-v--~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      +.++||+|+ |.+|.+.++.+...|+ +|+++++.+ +..+.+++    .+... +  .|-.+  .+.+.+.+.+...  
T Consensus         7 ~k~vlVTGas~gIG~~~a~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~--~~~v~~~~~~~~~~~   83 (264)
T 3i4f_A            7 VRHALITAGTKGLGKQVTEKLLAKGY-SVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTK--KEDLHKIVEEAMSHF   83 (264)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             cCEEEEeCCCchhHHHHHHHHHHCCC-EEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCC--HHHHHHHHHHHHHHh
Confidence            578999987 9999999998888899 888885554 33333332    22221 2  23333  1223333333222  


Q ss_pred             CCccEEEEccC
Q 016507          271 GGADYCFECVG  281 (388)
Q Consensus       271 g~~dvvid~~g  281 (388)
                      +++|++|++.|
T Consensus        84 g~id~lv~~Ag   94 (264)
T 3i4f_A           84 GKIDFLINNAG   94 (264)
T ss_dssp             SCCCEEECCCC
T ss_pred             CCCCEEEECCc
Confidence            37999999998

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=94.85  E-value=0.18  Score=45.45  Aligned_cols=74  Identities=19%  Similarity=0.258  Sum_probs=46.7

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .++..+|||+|+ |.+|..+++.+...|+ +|+++++++.+ +.   +++..+ .|-.+  ...+.+.+..   +++|+|
T Consensus         9 ~~~~~~vlVTGatG~iG~~l~~~L~~~G~-~V~~~~r~~~~-~~---l~~~~~~~Dl~d--~~~~~~~~~~---~~~d~v   78 (321)
T 2pk3_A            9 HHGSMRALITGVAGFVGKYLANHLTEQNV-EVFGTSRNNEA-KL---PNVEMISLDIMD--SQRVKKVISD---IKPDYI   78 (321)
T ss_dssp             ----CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCTTC-CC---TTEEEEECCTTC--HHHHHHHHHH---HCCSEE
T ss_pred             ccCcceEEEECCCChHHHHHHHHHHHCCC-EEEEEecCCcc-cc---ceeeEEECCCCC--HHHHHHHHHh---cCCCEE
Confidence            345678999987 9999999998888898 99999887654 21   233322 23222  1222222222   269999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.+.
T Consensus        79 ih~A~~   84 (321)
T 2pk3_A           79 FHLAAK   84 (321)
T ss_dssp             EECCSC
T ss_pred             EEcCcc
Confidence            999874

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=94.85  E-value=0.022  Score=50.83  Aligned_cols=72  Identities=10%  Similarity=0.051  Sum_probs=49.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      -.+.+++|+|+|.+|.+++..+...|+++|+++.++.++.+.+.. ... ..        .+. .+.+.. ..+|+||+|
T Consensus       115 l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~-~~~-~~--------~~~-~~~~~~-~~aDiVIna  182 (277)
T 3don_A          115 IEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSL-NIN-KI--------NLS-HAESHL-DEFDIIINT  182 (277)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCS-CCE-EE--------CHH-HHHHTG-GGCSEEEEC
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHH-hcc-cc--------cHh-hHHHHh-cCCCEEEEC
Confidence            357899999999999999999999998789999998877554332 111 11        121 222221 278999999


Q ss_pred             cCCH
Q 016507          280 VGLA  283 (388)
Q Consensus       280 ~g~~  283 (388)
                      ++..
T Consensus       183 Tp~G  186 (277)
T 3don_A          183 TPAG  186 (277)
T ss_dssp             CC--
T ss_pred             ccCC
Confidence            8754

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=94.84  E-value=0.061  Score=49.91  Aligned_cols=74  Identities=18%  Similarity=0.219  Sum_probs=49.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHH-cCCcEE-EcCC-CCCCccHHHHHHhhcCCCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FGVTEF-VNSK-NCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~-lga~~v-~~~~-~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      .+.+|||+|+ |.+|..+++.+... |+ +|+++++++++.+.+.. .++..+ .|-. +   .+.   +.+... ++|+
T Consensus        23 ~~~~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d---~~~---~~~~~~-~~d~   94 (372)
T 3slg_A           23 KAKKVLILGVNGFIGHHLSKRILETTDW-EVFGMDMQTDRLGDLVKHERMHFFEGDITIN---KEW---VEYHVK-KCDV   94 (372)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHHSSC-EEEEEESCCTTTGGGGGSTTEEEEECCTTTC---HHH---HHHHHH-HCSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCC-EEEEEeCChhhhhhhccCCCeEEEeCccCCC---HHH---HHHHhc-cCCE
Confidence            3568999997 99999999888776 88 99999998876554433 233332 2222 2   222   222221 7999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      ||++.+.
T Consensus        95 Vih~A~~  101 (372)
T 3slg_A           95 ILPLVAI  101 (372)
T ss_dssp             EEECBCC
T ss_pred             EEEcCcc
Confidence            9998874

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=94.81  E-value=0.084  Score=47.32  Aligned_cols=73  Identities=19%  Similarity=0.181  Sum_probs=50.5

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|.|+|+|.+|...+..+...|. +|++.+ ++++.+.+.+.|+..   .     .+..+.+.     ..|+||-|++.+
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~-~~~~~~~~~~~g~~~---~-----~~~~~~~~-----~~D~vi~~vp~~   69 (295)
T 1yb4_A            5 KLGFIGLGIMGSPMAINLARAGH-QLHVTT-IGPVADELLSLGAVN---V-----ETARQVTE-----FADIIFIMVPDT   69 (295)
T ss_dssp             EEEECCCSTTHHHHHHHHHHTTC-EEEECC-SSCCCHHHHTTTCBC---C-----SSHHHHHH-----TCSEEEECCSSH
T ss_pred             EEEEEccCHHHHHHHHHHHhCCC-EEEEEc-CHHHHHHHHHcCCcc---c-----CCHHHHHh-----cCCEEEEECCCH
Confidence            79999999999998888877898 899988 877777666555421   1     12333221     578888888776


Q ss_pred             HHHHHHHH
Q 016507          284 SLVQEAYA  291 (388)
Q Consensus       284 ~~~~~~~~  291 (388)
                      ..+...+.
T Consensus        70 ~~~~~v~~   77 (295)
T 1yb4_A           70 PQVEDVLF   77 (295)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            54555554

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=94.80  E-value=0.11  Score=50.92  Aligned_cols=82  Identities=12%  Similarity=0.099  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEE-cCCc-------------h----HHHHHHHcCCcEEE---cCCCC
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVIS-------------E----KFEIGKRFGVTEFV---NSKNC  256 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~~~~-------------~----~~~~~~~lga~~v~---~~~~~  256 (388)
                      ++++.++||+|+ |++|...++.+...|++.|+.+ .++.             +    ..+.++..|....+   |-.+ 
T Consensus       248 ~~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd-  326 (525)
T 3qp9_A          248 WQADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTD-  326 (525)
T ss_dssp             SCTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTS-
T ss_pred             ecCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCC-
Confidence            567889999987 9999998888877898567777 7763             1    12233445654322   2222 


Q ss_pred             CCccHHHHHHhhcC-CCccEEEEccCC
Q 016507          257 GDKSVSQIIIDMTD-GGADYCFECVGL  282 (388)
Q Consensus       257 ~~~~~~~~i~~~~~-g~~dvvid~~g~  282 (388)
                       .+.+.+.+.+... ++.|+||++.|.
T Consensus       327 -~~~v~~~~~~i~~~g~id~vVh~AGv  352 (525)
T 3qp9_A          327 -AEAAARLLAGVSDAHPLSAVLHLPPT  352 (525)
T ss_dssp             -HHHHHHHHHTSCTTSCEEEEEECCCC
T ss_pred             -HHHHHHHHHHHHhcCCCcEEEECCcC
Confidence             2334444433332 379999999884

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=94.80  E-value=0.019  Score=50.21  Aligned_cols=74  Identities=12%  Similarity=0.153  Sum_probs=45.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHH-----HHhhcC--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQI-----IIDMTD--GG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~-----i~~~~~--g~  272 (388)
                      .+.++||+|+ |.+|.+.++.+.. |+ +|+++++++++.+.+.+..-...+..      ++.+.     +.+...  ++
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~-g~-~v~~~~r~~~~~~~~~~~~~~~~~~~------D~~~~~~~~~~~~~~~~~~~   75 (245)
T 3e9n_A            4 KKKIAVVTGATGGMGIEIVKDLSR-DH-IVYALGRNPEHLAALAEIEGVEPIES------DIVKEVLEEGGVDKLKNLDH   75 (245)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHTT-TS-EEEEEESCHHHHHHHHTSTTEEEEEC------CHHHHHHTSSSCGGGTTCSC
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHhC-CC-eEEEEeCCHHHHHHHHhhcCCcceec------ccchHHHHHHHHHHHHhcCC
Confidence            3678999987 9999988877655 87 89999998888776655322222221      11111     111111  37


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|++|++.|.
T Consensus        76 id~lv~~Ag~   85 (245)
T 3e9n_A           76 VDTLVHAAAV   85 (245)
T ss_dssp             CSEEEECC--
T ss_pred             CCEEEECCCc
Confidence            9999999885

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=94.80  E-value=0.19  Score=40.59  Aligned_cols=99  Identities=21%  Similarity=0.252  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcC-CCccEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD-GGADYC  276 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~-g~~dvv  276 (388)
                      +.++++||-+|.|. |..+..+++..|. .++++++.++ ..+.   -.+ .++..+- ......+.+..... +.||+|
T Consensus        20 ~~~~~~vLd~G~G~-G~~~~~l~~~~~~~~~v~~~D~~~-~~~~---~~~-~~~~~d~-~~~~~~~~~~~~~~~~~~D~i   92 (180)
T 1ej0_A           20 FKPGMTVVDLGAAP-GGWSQYVVTQIGGKGRIIACDLLP-MDPI---VGV-DFLQGDF-RDELVMKALLERVGDSKVQVV   92 (180)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHHHCTTCEEEEEESSC-CCCC---TTE-EEEESCT-TSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCCCeEEEeCCCC-CHHHHHHHHHhCCCCeEEEEECcc-cccc---CcE-EEEEccc-ccchhhhhhhccCCCCceeEE
Confidence            67899999999877 8888888887642 3999999887 3322   112 2222221 01222222333233 489999


Q ss_pred             EEc-----cCC------------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          277 FEC-----VGL------------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       277 id~-----~g~------------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +..     .+.            ...+..+.+.|+++ |.++....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~~~~~  137 (180)
T 1ej0_A           93 MSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPG-GSFVVKVF  137 (180)
T ss_dssp             EECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             EECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            872     233            24477888999997 99887654

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=94.79  E-value=0.19  Score=46.15  Aligned_cols=130  Identities=12%  Similarity=-0.014  Sum_probs=81.1

Q ss_pred             CEEEEEccc-hhHHHHHHHHHHc--CCcEE-EEEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          203 STVVIFGLG-SIGLAVAEGARLC--GATRI-IGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       203 ~~VlI~Gag-~vG~~ai~la~~~--g~~~V-i~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      =+|.|+|.| .+|...+..++..  ++ ++ .+.++++++.+ +++++|...++       .++.+.+.+   ..+|+|+
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~-~lvav~d~~~~~~~~~a~~~~~~~~~-------~~~~~ll~~---~~vD~V~   87 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLF-EITAVTSRTRSHAEEFAKMVGNPAVF-------DSYEELLES---GLVDAVD   87 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTE-EEEEEECSSHHHHHHHHHHHSSCEEE-------SCHHHHHHS---SCCSEEE
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCce-EEEEEEcCCHHHHHHHHHHhCCCccc-------CCHHHHhcC---CCCCEEE
Confidence            478999998 7898777766654  56 55 45566766665 45567875554       234444432   2799999


Q ss_pred             EccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH-------HhcCcEEEEeeecCCCccCcHHHHHHHHhCC
Q 016507          278 ECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV-------LHSGKILMGSLFGGLKAKSDIPILLKRYMDK  350 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-------~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~  350 (388)
                      .|++.....+.+..++..  |+=|++.     +++..+....       -.+++.+.-...  +.....++.+.+++.+|
T Consensus        88 i~tp~~~H~~~~~~al~a--GkhVl~E-----KPla~~~~ea~~l~~~a~~~g~~~~v~~~--~R~~p~~~~~k~~i~~g  158 (340)
T 1zh8_A           88 LTLPVELNLPFIEKALRK--GVHVICE-----KPISTDVETGKKVVELSEKSEKTVYIAEN--FRHVPAFWKAKELVESG  158 (340)
T ss_dssp             ECCCGGGHHHHHHHHHHT--TCEEEEE-----SSSSSSHHHHHHHHHHHHHCSSCEEEECG--GGGCHHHHHHHHHHHTT
T ss_pred             EeCCchHHHHHHHHHHHC--CCcEEEe-----CCCCCCHHHHHHHHHHHHHcCCeEEEEec--ccCCHHHHHHHHHHhcC
Confidence            999988778888888887  5555553     3344444332       133444332221  22235678888888888


Q ss_pred             CC
Q 016507          351 EL  352 (388)
Q Consensus       351 ~~  352 (388)
                      .+
T Consensus       159 ~i  160 (340)
T 1zh8_A          159 AI  160 (340)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=94.78  E-value=0.17  Score=49.14  Aligned_cols=78  Identities=17%  Similarity=0.289  Sum_probs=50.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-------HHHHHHcCCcEEE---cCCCCCCccHHHHHHhhcC-
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FEIGKRFGVTEFV---NSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-------~~~~~~lga~~v~---~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .++||+|+ |++|...++.+...|+++|+.+.++...       .+.++..|....+   |-.+  .+.+.+.+.+... 
T Consensus       240 ~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd--~~~v~~~~~~i~~~  317 (496)
T 3mje_A          240 GSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAAD--REALAALLAELPED  317 (496)
T ss_dssp             SEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHTCCTT
T ss_pred             CEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCC--HHHHHHHHHHHHHh
Confidence            89999987 9999998888888898788888775321       2234445654322   2222  1334444433322 


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      ++.|+||++.|.
T Consensus       318 g~ld~vVh~AGv  329 (496)
T 3mje_A          318 APLTAVFHSAGV  329 (496)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCeEEEECCcc
Confidence            279999999884

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=94.77  E-value=0.078  Score=47.78  Aligned_cols=72  Identities=22%  Similarity=0.179  Sum_probs=52.2

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      .+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...        .+..+.    .  ..|+||-|++.
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~~~~~g~~~~--------~~~~~~----~--~aDvvi~~vp~   80 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEWPG-GVTVYDIRIEAMTPLAEAGATLA--------DSVADV----A--AADLIHITVLD   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTSTT-CEEEECSSTTTSHHHHHTTCEEC--------SSHHHH----T--TSSEEEECCSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHCCCEEc--------CCHHHH----H--hCCEEEEECCC
Confidence            479999999999998888888898 89999999999888877775321        122222    1  16788888876


Q ss_pred             HHHHHHH
Q 016507          283 ASLVQEA  289 (388)
Q Consensus       283 ~~~~~~~  289 (388)
                      +..+...
T Consensus        81 ~~~~~~v   87 (296)
T 3qha_A           81 DAQVREV   87 (296)
T ss_dssp             HHHHHHH
T ss_pred             hHHHHHH
Confidence            5434433

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.74  E-value=0.065  Score=46.31  Aligned_cols=100  Identities=17%  Similarity=0.192  Sum_probs=59.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCc-EEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~-~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .+.+|||+|+ |.+|...++.+...|+. +|+++++++++.+.+..-++..+ .|-.+   .   +.+.+... ++|+||
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d---~---~~~~~~~~-~~d~vi   89 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK---L---DDYASAFQ-GHDVGF   89 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG---G---GGGGGGGS-SCSEEE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCC---H---HHHHHHhc-CCCEEE
Confidence            3678999997 99999999888777863 78888887765432221122221 22222   1   12333322 799999


Q ss_pred             EccCCHH--------------HHHHHHHHhhcC-CceEEEEccCC
Q 016507          278 ECVGLAS--------------LVQEAYACCRKG-WGKTIVLGVDQ  307 (388)
Q Consensus       278 d~~g~~~--------------~~~~~~~~l~~~-~G~~v~~g~~~  307 (388)
                      ++.|...              .....++.+... .++++.++...
T Consensus        90 ~~ag~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~  134 (242)
T 2bka_A           90 CCLGTTRGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKG  134 (242)
T ss_dssp             ECCCCCHHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             ECCCcccccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCc
Confidence            9998532              122334444332 25888887643

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=94.73  E-value=0.04  Score=51.30  Aligned_cols=112  Identities=21%  Similarity=0.249  Sum_probs=73.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc----hH---H-----HHHHHcCCcEEEcCCCCCCccHHHHHHhh
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS----EK---F-----EIGKRFGVTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~----~~---~-----~~~~~lga~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      +..+|+|.|+|..|..+++++..+|+++|+++|++-    .|   +     .+++....    ....   ..+.+.++  
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~----~~~~---~~L~eav~--  257 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNR----EFKS---GTLEDALE--  257 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSC----TTCC---CSCSHHHH--
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCc----ccch---hhHHHHhc--
Confidence            457999999999999999999999999999998863    11   1     12221100    0011   34555554  


Q ss_pred             cCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          269 TDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       269 ~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                         +.|++|-+++.....++.++.|+++ ..+..+.+..    ....+......+..+..+
T Consensus       258 ---~ADV~IG~Sapgl~T~EmVk~Ma~~-pIIfalsNPt----~E~~pe~a~~~g~~i~at  310 (398)
T 2a9f_A          258 ---GADIFIGVSAPGVLKAEWISKMAAR-PVIFAMANPI----PEIYPDEALEAGAYIVGT  310 (398)
T ss_dssp             ---TTCSEEECCSTTCCCHHHHHTSCSS-CEEEECCSSS----CSSCHHHHHTTTCSEEEE
T ss_pred             ---cCCEEEecCCCCCCCHHHHHhhCCC-CEEEECCCCC----ccCCHHHHHHhCCeEEEe
Confidence               5799999987444357888999986 8887887643    244445554434445444

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=94.73  E-value=0.017  Score=51.23  Aligned_cols=75  Identities=20%  Similarity=0.233  Sum_probs=47.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhc--CCCccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT--DGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~--~g~~dvvi  277 (388)
                      .+.++||+|+ |.+|.+.++.+...|+ +|++++++.++.+....+    ..|-.+  .....+.+.+..  .+++|+++
T Consensus        27 ~gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~----~~Dv~~--~~~~~~~~~~~~~~~g~iD~lv   99 (266)
T 3uxy_A           27 EGKVALVTGAAGGIGGAVVTALRAAGA-RVAVADRAVAGIAADLHL----PGDLRE--AAYADGLPGAVAAGLGRLDIVV   99 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECSSCCTTSCCSEEC----CCCTTS--HHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHhhhcc----CcCCCC--HHHHHHHHHHHHHhcCCCCEEE
Confidence            5788999987 9999999998888899 999998876654322111    112222  111222222211  13799999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      ++.|.
T Consensus       100 nnAg~  104 (266)
T 3uxy_A          100 NNAGV  104 (266)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            99884

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=94.73  E-value=0.13  Score=45.12  Aligned_cols=101  Identities=21%  Similarity=0.343  Sum_probs=67.1

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCc--EEEcCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT--EFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~--~v~~~~~~~~~~~~~~i~  266 (388)
                      +.......++.+||-+|.| .|..+..+++.. . +|++++.+++..+.+++.    +..  .++..+-   ..+     
T Consensus        29 l~~~l~~~~~~~vLDiGcG-~G~~~~~l~~~~-~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~---~~l-----   97 (260)
T 1vl5_A           29 LMQIAALKGNEEVLDVATG-GGHVANAFAPFV-K-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----   97 (260)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGGGS-S-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----
T ss_pred             HHHHhCCCCCCEEEEEeCC-CCHHHHHHHHhC-C-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecH---HhC-----
Confidence            4455667899999999886 477777777654 4 999999999888776653    322  1221111   111     


Q ss_pred             hhcCCCccEEEEccCC------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          267 DMTDGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       267 ~~~~g~~dvvid~~g~------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .+..+.||+|+.....      ...+..+.+.|+++ |.++....
T Consensus        98 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~~~~~  141 (260)
T 1vl5_A           98 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVDN  141 (260)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCC-CEEEEEEc
Confidence            1122379999876442      24478999999997 99887643

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.72  E-value=0.059  Score=47.70  Aligned_cols=79  Identities=16%  Similarity=0.251  Sum_probs=50.1

Q ss_pred             CCCEEEEEc---cchhHHHHHHHHHHcCCcEEEEEcCCchH-HH-HHHHcCCc--E-EEcCCCCCCccHHHHHH---hhc
Q 016507          201 VGSTVVIFG---LGSIGLAVAEGARLCGATRIIGVDVISEK-FE-IGKRFGVT--E-FVNSKNCGDKSVSQIII---DMT  269 (388)
Q Consensus       201 ~~~~VlI~G---ag~vG~~ai~la~~~g~~~Vi~~~~~~~~-~~-~~~~lga~--~-v~~~~~~~~~~~~~~i~---~~~  269 (388)
                      .+.++||+|   +|.+|.+.++.+...|+ +|+++++++++ .+ ..+.++..  . ..|-.+  .+.+.+.+.   +..
T Consensus         6 ~~k~vlVTGa~~s~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   82 (269)
T 2h7i_A            6 DGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQN--EEHLASLAGRVTEAI   82 (269)
T ss_dssp             TTCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCchHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHhcCCCceEEEccCCC--HHHHHHHHHHHHHHh
Confidence            467899998   48999999998888899 89999888765 23 33334432  1 223333  122222222   222


Q ss_pred             C--CCccEEEEccCC
Q 016507          270 D--GGADYCFECVGL  282 (388)
Q Consensus       270 ~--g~~dvvid~~g~  282 (388)
                      +  +++|++|++.|.
T Consensus        83 g~~~~iD~lv~nAg~   97 (269)
T 2h7i_A           83 GAGNKLDGVVHSIGF   97 (269)
T ss_dssp             CTTCCEEEEEECCCC
T ss_pred             CCCCCceEEEECCcc
Confidence            2  179999998873

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=94.71  E-value=0.19  Score=45.60  Aligned_cols=101  Identities=17%  Similarity=0.205  Sum_probs=66.2

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHHHHHH----cCCc--EEEcCCCCCCccHHHHHHh
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFEIGKR----FGVT--EFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~~~~~----lga~--~v~~~~~~~~~~~~~~i~~  267 (388)
                      ....++++++||=+|+|+ |..++.+++.++ ..+|++++.++.+.+.+++    +|..  .++..+.   ..+.    .
T Consensus       112 ~~l~~~~g~~VLDlg~G~-G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~---~~~~----~  183 (315)
T 1ixk_A          112 VALDPKPGEIVADMAAAP-GGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSS---LHIG----E  183 (315)
T ss_dssp             HHHCCCTTCEEEECCSSC-SHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCG---GGGG----G
T ss_pred             HHhCCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECCh---hhcc----c
Confidence            445788999999888765 666667777653 2389999999998877664    3653  2332221   2211    1


Q ss_pred             hcCCCccEEEE---ccCC-------------------------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          268 MTDGGADYCFE---CVGL-------------------------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       268 ~~~g~~dvvid---~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       ..+.||+|+-   |+|.                         ...+..+.+.|+++ |+++....
T Consensus       184 -~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpG-G~lv~stc  247 (315)
T 1ixk_A          184 -LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPG-GILVYSTC  247 (315)
T ss_dssp             -GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             -ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEEeC
Confidence             1237999974   4332                         24467889999997 99887544

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=94.71  E-value=0.17  Score=45.27  Aligned_cols=97  Identities=13%  Similarity=0.124  Sum_probs=66.1

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHHHhhcC
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.++.+||-+|.| .|..+..+++..++ +|++++.++...+.+++    .|..   .++..+-   .++     .+..
T Consensus        79 ~~~~~~~vLDiGcG-~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~---~~~-----~~~~  148 (297)
T 2o57_A           79 VLQRQAKGLDLGAG-YGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI-----PCED  148 (297)
T ss_dssp             CCCTTCEEEEETCT-TSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC-----SSCT
T ss_pred             CCCCCCEEEEeCCC-CCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCc---ccC-----CCCC
Confidence            77899999999886 47778888887788 99999999987776654    2321   2222111   111     1112


Q ss_pred             CCccEEEEccCC------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          271 GGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       271 g~~dvvid~~g~------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.||+|+.....      ...+..+.+.|+++ |.++....
T Consensus       149 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lkpg-G~l~~~~~  188 (297)
T 2o57_A          149 NSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  188 (297)
T ss_dssp             TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCEeEEEecchhhhcCCHHHHHHHHHHHcCCC-eEEEEEEe
Confidence            379999865332      34478999999997 99887653

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=94.70  E-value=0.14  Score=46.07  Aligned_cols=68  Identities=22%  Similarity=0.278  Sum_probs=38.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +.+|||+|+ |.+|...++.+...|+ +|++++++..+.      + -...|-.+  .+.+.+.+...   ++|+||++.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~------~-~~~~Dl~d--~~~~~~~~~~~---~~d~vih~A   68 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNW-HAVGCGFRRARP------K-FEQVNLLD--SNAVHHIIHDF---QPHVIVHCA   68 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEC---------------------------CHHHHHHH---CCSEEEECC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCC-eEEEEccCCCCC------C-eEEecCCC--HHHHHHHHHhh---CCCEEEECC
Confidence            468999997 9999999998888898 999998765431      1 11122222  12233333322   689999998


Q ss_pred             CC
Q 016507          281 GL  282 (388)
Q Consensus       281 g~  282 (388)
                      +.
T Consensus        69 ~~   70 (315)
T 2ydy_A           69 AE   70 (315)
T ss_dssp             --
T ss_pred             cc
Confidence            74

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=94.70  E-value=0.14  Score=46.55  Aligned_cols=69  Identities=23%  Similarity=0.283  Sum_probs=48.5

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC--chHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVI--SEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~--~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      -+|.|+|.|.+|...++.+...|+.+|++.+++  +++.+.+.+.|+...        .+..+.+.     ..|+||-|+
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~--------~~~~e~~~-----~aDvVi~~v   91 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCK--------ASVAEVAG-----ECDVIFSLV   91 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEEC--------SCHHHHHH-----HCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEe--------CCHHHHHh-----cCCEEEEec
Confidence            479999999999998888877787689999986  577777777775321        12222222     457777777


Q ss_pred             CCHH
Q 016507          281 GLAS  284 (388)
Q Consensus       281 g~~~  284 (388)
                      ....
T Consensus        92 p~~~   95 (312)
T 3qsg_A           92 TAQA   95 (312)
T ss_dssp             CTTT
T ss_pred             Cchh
Confidence            6554

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=94.69  E-value=0.062  Score=48.91  Aligned_cols=96  Identities=14%  Similarity=0.146  Sum_probs=62.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc------CC--c--EEEcCCCCCCccHHHHHHhhc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF------GV--T--EFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l------ga--~--~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      ..+.+||++|.|. |..+..+++..+..+|++++.+++-.+.+++.      +.  .  .++.      .+..+.+.. .
T Consensus       107 ~~~~~VLdIG~G~-G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~------~D~~~~l~~-~  178 (314)
T 2b2c_A          107 PDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC------GDGFEFLKN-H  178 (314)
T ss_dssp             SSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC------SCHHHHHHH-C
T ss_pred             CCCCEEEEEcCCc-CHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEE------ChHHHHHHh-c
Confidence            4568999998754 66677777765544999999999988887763      11  1  1221      233343433 3


Q ss_pred             CCCccEEEEccCC----------HHHHHHHHHHhhcCCceEEEEc
Q 016507          270 DGGADYCFECVGL----------ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       270 ~g~~dvvid~~g~----------~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      .+.||+|+--...          ...++.+.+.|+++ |.++...
T Consensus       179 ~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~Lkpg-G~lv~~~  222 (314)
T 2b2c_A          179 KNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQG  222 (314)
T ss_dssp             TTCEEEEEECCC-------------HHHHHHHHEEEE-EEEEEEC
T ss_pred             CCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCC-eEEEEEC
Confidence            3489999853321          34477889999997 9888764

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=94.69  E-value=0.091  Score=48.57  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=30.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHH--cCCcEEEEEcCCch
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARL--CGATRIIGVDVISE  237 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~--~g~~~Vi~~~~~~~  237 (388)
                      .+.+|||+|+ |.+|..+++.+..  .|+ +|++++++..
T Consensus         9 ~~~~vlVTGatG~IG~~l~~~L~~~~~g~-~V~~~~r~~~   47 (362)
T 3sxp_A            9 ENQTILITGGAGFVGSNLAFHFQENHPKA-KVVVLDKFRS   47 (362)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHCTTS-EEEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCC-eEEEEECCCc
Confidence            4679999987 9999999888877  899 9999987654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=94.68  E-value=0.14  Score=43.84  Aligned_cols=100  Identities=19%  Similarity=0.318  Sum_probs=65.5

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCC-cEEEcCCCCCCccHHHHHHhhc
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV-TEFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga-~~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      ....++++++||=+|.|..|..++.+++..+. +|++++.+++..+.+++    .+. -.++..+-   ..+    ..+.
T Consensus        49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~---~~~----~~~~  120 (230)
T 3evz_A           49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNC-KVTATEVDEEFFEYARRNIERNNSNVRLVKSNG---GII----KGVV  120 (230)
T ss_dssp             HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHTTCCCEEEECSS---CSS----TTTC
T ss_pred             hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCc---hhh----hhcc
Confidence            34457889999999988668888888887666 99999999988777664    343 12332221   001    1122


Q ss_pred             CCCccEEEEccCC-------------------------HHHHHHHHHHhhcCCceEEEE
Q 016507          270 DGGADYCFECVGL-------------------------ASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       270 ~g~~dvvid~~g~-------------------------~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      .+.||+|+-.-.-                         ...+..+.+.|+++ |.++.+
T Consensus       121 ~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~~~  178 (230)
T 3evz_A          121 EGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG-GKVALY  178 (230)
T ss_dssp             CSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE-EEEEEE
T ss_pred             cCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC-eEEEEE
Confidence            2489999853210                         33467777888887 888775

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=94.68  E-value=0.17  Score=46.65  Aligned_cols=97  Identities=15%  Similarity=0.165  Sum_probs=58.9

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH--HHHHHc-CCcEE-Ec-CCCCCCccHHHHHHhhcCCCccE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF--EIGKRF-GVTEF-VN-SKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~--~~~~~l-ga~~v-~~-~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      +.+|||+|+ |.+|...++.+...|+ +|+++++++++.  +.+... ++..+ .| ..+   .   +.+.+... ++|+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d---~---~~l~~~~~-~~d~   76 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNN---V---PLMDTLFE-GAHL   76 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSHHHHHHHTSTTEEEEESCCTTC---H---HHHHHHHT-TCSE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCCChhhHHHHhhcCCcEEEECCccCC---H---HHHHHHHh-cCCE
Confidence            467999997 9999999988877898 899988877654  333332 33322 22 222   2   22333222 6899


Q ss_pred             EEEccCCH-----HHHHHHHHHhhcC--CceEEEEccC
Q 016507          276 CFECVGLA-----SLVQEAYACCRKG--WGKTIVLGVD  306 (388)
Q Consensus       276 vid~~g~~-----~~~~~~~~~l~~~--~G~~v~~g~~  306 (388)
                      ||.+.+..     .....+++.+...  -++++.++..
T Consensus        77 Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~  114 (352)
T 1xgk_A           77 AFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMP  114 (352)
T ss_dssp             EEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECC
T ss_pred             EEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCc
Confidence            99877542     1124445554443  1478887753

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=94.66  E-value=0.043  Score=47.49  Aligned_cols=73  Identities=15%  Similarity=0.193  Sum_probs=46.1

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhc-CCCccEEEEc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT-DGGADYCFEC  279 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~-~g~~dvvid~  279 (388)
                      +.+|||+|+ |.+|...++.+...|+ +|++++++++ .+   ++ .-...|-.+  .+.+.+.+.+.. .+++|+++++
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~-~~---~~-~~~~~D~~~--~~~~~~~~~~~~~~~~~d~li~~   73 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGY-RVVVLDLRRE-GE---DL-IYVEGDVTR--EEDVRRAVARAQEEAPLFAVVSA   73 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCC-SS---SS-EEEECCTTC--HHHHHHHHHHHHHHSCEEEEEEC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEccCcc-cc---ce-EEEeCCCCC--HHHHHHHHHHHHhhCCceEEEEc
Confidence            568999987 9999999988888899 8999988765 11   11 001123332  123333333320 1279999998


Q ss_pred             cCC
Q 016507          280 VGL  282 (388)
Q Consensus       280 ~g~  282 (388)
                      .|.
T Consensus        74 ag~   76 (242)
T 1uay_A           74 AGV   76 (242)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            873

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=94.66  E-value=0.12  Score=47.14  Aligned_cols=129  Identities=12%  Similarity=0.142  Sum_probs=77.3

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEE-EEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi-~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|.|+|.|.+|...+..++.. ++ +++ +.++++++.+ +++++|...++       .++.+.+.+   ..+|+|+.|+
T Consensus         7 rigiiG~G~ig~~~~~~l~~~~~~-~~~av~d~~~~~~~~~a~~~~~~~~~-------~~~~~ll~~---~~~D~V~i~t   75 (329)
T 3evn_A            7 RYGVVSTAKVAPRFIEGVRLAGNG-EVVAVSSRTLESAQAFANKYHLPKAY-------DKLEDMLAD---ESIDVIYVAT   75 (329)
T ss_dssp             EEEEEBCCTTHHHHHHHHHHHCSE-EEEEEECSCSSTTCC---CCCCSCEE-------SCHHHHHTC---TTCCEEEECS
T ss_pred             EEEEEechHHHHHHHHHHHhCCCc-EEEEEEcCCHHHHHHHHHHcCCCccc-------CCHHHHhcC---CCCCEEEECC
Confidence            789999999998777666544 55 555 4466666554 34456665343       233333321   2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------H-HhcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------V-LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~-~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      ......+.+..++..  |+-+.+.     +++..+...      . -.+++.+.-...  +.....++.+.+++.+|.+
T Consensus        76 p~~~h~~~~~~al~a--Gk~Vl~E-----KP~a~~~~e~~~l~~~a~~~~~~~~v~~~--~r~~p~~~~~~~~i~~g~i  145 (329)
T 3evn_A           76 INQDHYKVAKAALLA--GKHVLVE-----KPFTLTYDQANELFALAESCNLFLMEAQK--SVFIPMTQVIKKLLASGEI  145 (329)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEEE-----SSCCSSHHHHHHHHHHHHHTTCCEEEECS--SCSSHHHHHHHHHHHTTTT
T ss_pred             CcHHHHHHHHHHHHC--CCeEEEc-----cCCcCCHHHHHHHHHHHHHcCCEEEEEEc--ccCCHHHHHHHHHHhCCCC
Confidence            988778888888887  4555553     333344332      1 234444432221  2223567888888988865

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.66  E-value=0.14  Score=46.24  Aligned_cols=85  Identities=14%  Similarity=0.159  Sum_probs=56.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC----CCCCccHHHHHHhhcC--CCccEEE
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK----NCGDKSVSQIIIDMTD--GGADYCF  277 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~----~~~~~~~~~~i~~~~~--g~~dvvi  277 (388)
                      +|.|+|+|.+|...+..+...|. +|+++++++++.+.+++.|........    .....+.    .+...  .++|+||
T Consensus         5 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            5 KIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSP----EEIDHQNEQVDLII   79 (316)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECG----GGCCTTSCCCSEEE
T ss_pred             eEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecc----hhhcccCCCCCEEE
Confidence            79999999999998888888898 999999999888887776643221000    0000000    01111  1689999


Q ss_pred             EccCCHHHHHHHHHHhh
Q 016507          278 ECVGLASLVQEAYACCR  294 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~  294 (388)
                      -|+.... ....++.+.
T Consensus        80 ~~v~~~~-~~~v~~~l~   95 (316)
T 2ew2_A           80 ALTKAQQ-LDAMFKAIQ   95 (316)
T ss_dssp             ECSCHHH-HHHHHHHHG
T ss_pred             EEecccc-HHHHHHHHH
Confidence            9998765 566655554

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=94.65  E-value=0.046  Score=49.11  Aligned_cols=38  Identities=34%  Similarity=0.427  Sum_probs=34.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++.++++++.
T Consensus       121 ~g~tvGIIGlG~IG~~vA~~l~~~G~-~V~~~dr~~~~~  158 (290)
T 3gvx_A          121 YGKALGILGYGGIGRRVAHLAKAFGM-RVIAYTRSSVDQ  158 (290)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSCCCT
T ss_pred             ecchheeeccCchhHHHHHHHHhhCc-EEEEEecccccc
Confidence            47899999999999999999999999 999999876543

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=94.62  E-value=0.034  Score=51.01  Aligned_cols=78  Identities=22%  Similarity=0.213  Sum_probs=46.8

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH----HHHHHc------CCc-EE--EcCCCCCCccHHHHHHh
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF----EIGKRF------GVT-EF--VNSKNCGDKSVSQIIID  267 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~----~~~~~l------ga~-~v--~~~~~~~~~~~~~~i~~  267 (388)
                      +.+|||+|+ |.+|.++++.+...|+ +|+.+.++.++.    +.++.+      +.. .+  .|-.+  .+.+.+.+.+
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~-~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d--~~~v~~~~~~   78 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPS-QSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD--SKSVAAARER   78 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTT-CCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC--HHHHHHHHHT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-ceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCC--HHHHHHHHHH
Confidence            567899987 9999999998888898 666665544322    222222      121 12  23333  2333344444


Q ss_pred             hcCCCccEEEEccCC
Q 016507          268 MTDGGADYCFECVGL  282 (388)
Q Consensus       268 ~~~g~~dvvid~~g~  282 (388)
                      ...+++|++|++.|.
T Consensus        79 ~~~g~iD~lVnnAG~   93 (327)
T 1jtv_A           79 VTEGRVDVLVCNAGL   93 (327)
T ss_dssp             CTTSCCSEEEECCCC
T ss_pred             HhcCCCCEEEECCCc
Confidence            333479999998873

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=94.60  E-value=0.23  Score=42.79  Aligned_cols=96  Identities=11%  Similarity=-0.020  Sum_probs=61.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      ....+|+|.|+|.+|...++.+...|.  |+++++++++.+.+. .+...+. -+.    .-.+.+.+..-.++|.|+-+
T Consensus         7 ~~~~~viI~G~G~~G~~la~~L~~~g~--v~vid~~~~~~~~~~-~~~~~i~-gd~----~~~~~l~~a~i~~ad~vi~~   78 (234)
T 2aef_A            7 AKSRHVVICGWSESTLECLRELRGSEV--FVLAEDENVRKKVLR-SGANFVH-GDP----TRVSDLEKANVRGARAVIVD   78 (234)
T ss_dssp             ---CEEEEESCCHHHHHHHHHSTTSEE--EEEESCGGGHHHHHH-TTCEEEE-SCT----TCHHHHHHTTCTTCSEEEEC
T ss_pred             CCCCEEEEECCChHHHHHHHHHHhCCe--EEEEECCHHHHHHHh-cCCeEEE-cCC----CCHHHHHhcCcchhcEEEEc
Confidence            345789999999999988888877776  889999988887776 6654333 211    11233433322389999999


Q ss_pred             cCCHHH---HHHHHHHhhcCCceEEEEc
Q 016507          280 VGLASL---VQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       280 ~g~~~~---~~~~~~~l~~~~G~~v~~g  304 (388)
                      ++.+..   .....+.+.+. .+++.-.
T Consensus        79 ~~~d~~n~~~~~~a~~~~~~-~~iia~~  105 (234)
T 2aef_A           79 LESDSETIHCILGIRKIDES-VRIIAEA  105 (234)
T ss_dssp             CSCHHHHHHHHHHHHHHCSS-SEEEEEC
T ss_pred             CCCcHHHHHHHHHHHHHCCC-CeEEEEE
Confidence            998742   22334444453 4666554

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=94.57  E-value=0.16  Score=46.89  Aligned_cols=84  Identities=18%  Similarity=0.121  Sum_probs=54.3

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC-------CCCccHHHHHHhhcCCCccE
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN-------CGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~-------~~~~~~~~~i~~~~~g~~dv  275 (388)
                      -+|.|+|+|.+|...+..+...|. +|+++++++++.+.+++.+.-.+.....       ....+..+.+     .++|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~D~   78 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAV-----KDADV   78 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHH-----TTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHH-----hcCCE
Confidence            379999999999998888877898 8999999988887776652111111000       0001232222     26899


Q ss_pred             EEEccCCHHHHHHHHHHh
Q 016507          276 CFECVGLASLVQEAYACC  293 (388)
Q Consensus       276 vid~~g~~~~~~~~~~~l  293 (388)
                      ||-|+.... ....++.+
T Consensus        79 vi~~v~~~~-~~~~~~~l   95 (359)
T 1bg6_A           79 ILIVVPAIH-HASIAANI   95 (359)
T ss_dssp             EEECSCGGG-HHHHHHHH
T ss_pred             EEEeCCchH-HHHHHHHH
Confidence            999998776 34444444

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=94.55  E-value=0.18  Score=46.08  Aligned_cols=129  Identities=12%  Similarity=0.137  Sum_probs=80.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcC---CcEEE-EEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          204 TVVIFGLGSIGLAVAEGARLCG---ATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g---~~~Vi-~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      +|.|+|.|.+|...+..++...   + +++ +.++++++.+ +++++|...++       .++.+.+.+   ..+|+|+-
T Consensus         4 rigiiG~G~ig~~~~~~l~~~~~~~~-~l~av~d~~~~~a~~~a~~~~~~~~~-------~~~~~ll~~---~~vD~V~i   72 (334)
T 3ohs_X            4 RWGIVSVGLISSDFTAVLQTLPRSEH-QVVAVAARDLSRAKEFAQKHDIPKAY-------GSYEELAKD---PNVEVAYV   72 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSCTTTE-EEEEEECSSHHHHHHHHHHHTCSCEE-------SSHHHHHHC---TTCCEEEE
T ss_pred             EEEEECchHHHHHHHHHHHhCCCCCe-EEEEEEcCCHHHHHHHHHHcCCCccc-------CCHHHHhcC---CCCCEEEE
Confidence            6899999999988777665543   3 444 4566666654 45667875554       234444332   27999999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH-------HhcCcEEEEeeecCCCccCcHHHHHHHHhCCC
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV-------LHSGKILMGSLFGGLKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-------~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  351 (388)
                      |+......+.+..++..  |+=|.+.     +++..+....       -.+++.+.-...  +.....++.+.+++.+|.
T Consensus        73 ~tp~~~H~~~~~~al~~--GkhVl~E-----KP~a~~~~e~~~l~~~a~~~~~~~~v~~~--~r~~p~~~~~k~~i~~g~  143 (334)
T 3ohs_X           73 GTQHPQHKAAVMLCLAA--GKAVLCE-----KPMGVNAAEVREMVTEARSRGLFLMEAIW--TRFFPASEALRSVLAQGT  143 (334)
T ss_dssp             CCCGGGHHHHHHHHHHT--TCEEEEE-----SSSSSSHHHHHHHHHHHHHTTCCEEEECG--GGGSHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHhc--CCEEEEE-----CCCCCCHHHHHHHHHHHHHhCCEEEEEEh--HhcCHHHHHHHHHHhcCC
Confidence            99988878888888887  4555553     3444444321       223444432211  122346778888888886


Q ss_pred             C
Q 016507          352 L  352 (388)
Q Consensus       352 ~  352 (388)
                      +
T Consensus       144 i  144 (334)
T 3ohs_X          144 L  144 (334)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=94.55  E-value=0.078  Score=44.70  Aligned_cols=96  Identities=16%  Similarity=0.153  Sum_probs=63.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC----cEEEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----TEFVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga----~~v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      +.++.+||-+|.|. |..+..+++. |..+|++++.++...+.+++...    -.++..+-   ..+     .+..+.||
T Consensus        40 ~~~~~~vLdiGcG~-G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~---~~~-----~~~~~~fD  109 (215)
T 2pxx_A           40 LRPEDRILVLGCGN-SALSYELFLG-GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDV---RKL-----DFPSASFD  109 (215)
T ss_dssp             CCTTCCEEEETCTT-CSHHHHHHHT-TCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCT---TSC-----CSCSSCEE
T ss_pred             cCCCCeEEEECCCC-cHHHHHHHHc-CCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcch---hcC-----CCCCCccc
Confidence            57889999999865 7777777776 44489999999998888876422    12222111   111     12223799


Q ss_pred             EEEEccCC---------------------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          275 YCFECVGL---------------------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       275 vvid~~g~---------------------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +|+.....                     ...+..+.+.|+++ |.++....
T Consensus       110 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~~~~  160 (215)
T 2pxx_A          110 VVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPG-GRFISMTS  160 (215)
T ss_dssp             EEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEE-EEEEEEES
T ss_pred             EEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCC-CEEEEEeC
Confidence            99963211                     34477888999997 99888754

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=94.54  E-value=0.25  Score=45.85  Aligned_cols=127  Identities=17%  Similarity=0.124  Sum_probs=77.1

Q ss_pred             EEEEEccchhHHH-HHHHHHHc-CCcEEEE-EcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGLGSIGLA-VAEGARLC-GATRIIG-VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Gag~vG~~-ai~la~~~-g~~~Vi~-~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|.|+|.|.+|.. .+...+.. ++ ++++ .++++++.+  +.++...++       .++.+.+.+   ..+|+|+.|+
T Consensus         9 rvgiiG~G~~g~~~~~~~l~~~~~~-~l~av~d~~~~~~~--~~~~~~~~~-------~~~~~ll~~---~~~D~V~i~t   75 (364)
T 3e82_A            9 NIALIGYGFVGKTFHAPLIRSVPGL-NLAFVASRDEEKVK--RDLPDVTVI-------ASPEAAVQH---PDVDLVVIAS   75 (364)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTSTTE-EEEEEECSCHHHHH--HHCTTSEEE-------SCHHHHHTC---TTCSEEEECS
T ss_pred             eEEEECCCHHHHHHHHHHHhhCCCe-EEEEEEcCCHHHHH--hhCCCCcEE-------CCHHHHhcC---CCCCEEEEeC
Confidence            7899999999984 66665544 67 6654 455555443  344433443       234333321   2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH-------HhcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV-------LHSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-------~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      +.....+.+..++..  |+-|.+.     +++..+....       -.+++.+.-..  .+.....++.+.+++.+|.+
T Consensus        76 p~~~H~~~~~~al~a--Gk~Vl~E-----KPla~~~~e~~~l~~~a~~~g~~~~v~~--~~r~~p~~~~~~~~i~~g~i  145 (364)
T 3e82_A           76 PNATHAPLARLALNA--GKHVVVD-----KPFTLDMQEARELIALAEEKQRLLSVFH--NRRWDSDYLGIRQVIEQGTL  145 (364)
T ss_dssp             CGGGHHHHHHHHHHT--TCEEEEC-----SCSCSSHHHHHHHHHHHHHTTCCEEECC--CCTTCHHHHHHHHHHHHTTT
T ss_pred             ChHHHHHHHHHHHHC--CCcEEEe-----CCCcCCHHHHHHHHHHHHHhCCeEEEEe--ecccCHHHHHHHHHHHcCCC
Confidence            988778888888887  5555553     3444444332       23344443222  12223467788888888855

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=94.50  E-value=0.1  Score=47.84  Aligned_cols=45  Identities=24%  Similarity=0.323  Sum_probs=37.5

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG  246 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg  246 (388)
                      -.|.+|.|+|.|.+|...++.++..|+ +|++.++++++ +.+..+|
T Consensus       144 l~g~~vgIIG~G~iG~~vA~~l~~~G~-~V~~~d~~~~~-~~~~~~g  188 (333)
T 2d0i_A          144 LYGKKVGILGMGAIGKAIARRLIPFGV-KLYYWSRHRKV-NVEKELK  188 (333)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCH-HHHHHHT
T ss_pred             CCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEECCCcch-hhhhhcC
Confidence            357799999999999999999999999 99999988776 4444444

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=94.50  E-value=0.14  Score=47.07  Aligned_cols=74  Identities=20%  Similarity=0.184  Sum_probs=53.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchH-HHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~-~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +.+|.|+|.|.+|.+.++.++..|. +|++.++++++ .+.+++.|+. +.   +     ..+.+.     ..|+|+-|+
T Consensus        16 ~~~I~IIG~G~mG~alA~~L~~~G~-~V~~~~~~~~~~~~~a~~~G~~-~~---~-----~~e~~~-----~aDvVilav   80 (338)
T 1np3_A           16 GKKVAIIGYGSQGHAHACNLKDSGV-DVTVGLRSGSATVAKAEAHGLK-VA---D-----VKTAVA-----AADVVMILT   80 (338)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTC-CEEEECCTTCHHHHHHHHTTCE-EE---C-----HHHHHH-----TCSEEEECS
T ss_pred             CCEEEEECchHHHHHHHHHHHHCcC-EEEEEECChHHHHHHHHHCCCE-Ec---c-----HHHHHh-----cCCEEEEeC
Confidence            3579999999999999999988898 78888887765 6777777864 22   1     222222     689999998


Q ss_pred             CCHHHHHHHHH
Q 016507          281 GLASLVQEAYA  291 (388)
Q Consensus       281 g~~~~~~~~~~  291 (388)
                      .... ....+.
T Consensus        81 p~~~-~~~v~~   90 (338)
T 1np3_A           81 PDEF-QGRLYK   90 (338)
T ss_dssp             CHHH-HHHHHH
T ss_pred             CcHH-HHHHHH
Confidence            8765 344444

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=94.49  E-value=0.048  Score=48.62  Aligned_cols=93  Identities=14%  Similarity=0.254  Sum_probs=59.4

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +.+|||+|+|.+|...++.+...|+ +|+++++++++.    ..++..+ .|-.+   .+   .+.+...+++|+||++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~-~V~~~~r~~~~~----~~~~~~~~~Dl~d---~~---~~~~~~~~~~d~vih~a   71 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGH-EVTGLRRSAQPM----PAGVQTLIADVTR---PD---TLASIVHLRPEILVYCV   71 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTC-CEEEEECTTSCC----CTTCCEEECCTTC---GG---GCTTGGGGCCSEEEECH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcccc----ccCCceEEccCCC---hH---HHHHhhcCCCCEEEEeC
Confidence            3579999999999999999988899 899998876652    1233322 23322   21   12223333599999998


Q ss_pred             CCH------------HHHHHHHHHhhcC-CceEEEEcc
Q 016507          281 GLA------------SLVQEAYACCRKG-WGKTIVLGV  305 (388)
Q Consensus       281 g~~------------~~~~~~~~~l~~~-~G~~v~~g~  305 (388)
                      +..            .....+++.+... -++++.++.
T Consensus        72 ~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS  109 (286)
T 3gpi_A           72 AASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSS  109 (286)
T ss_dssp             HHHHHC-----CCSHHHHHHHHHHTTTSCCCEEEEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcc
Confidence            642            1245566666543 147877664

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=94.49  E-value=0.17  Score=45.93  Aligned_cols=102  Identities=21%  Similarity=0.171  Sum_probs=65.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHH-cCCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARL-CGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~-~g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      +...+++|+|+|.+|...++.+.. .+..+|.+.+++ ...+++++    +|......  +     +.+.+.     +.|
T Consensus       119 ~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a~~la~~l~~~~g~~~~~~--~-----~~eav~-----~aD  185 (313)
T 3hdj_A          119 PRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-ASPEILERIGRRCGVPARMA--A-----PADIAA-----QAD  185 (313)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CCHHHHHHHHHHHTSCEEEC--C-----HHHHHH-----HCS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HHHHHHHHHHHhcCCeEEEe--C-----HHHHHh-----hCC
Confidence            456789999999999888876654 567799999988 44445443    46543221  2     333443     689


Q ss_pred             EEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHH
Q 016507          275 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF  317 (388)
Q Consensus       275 vvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~  317 (388)
                      +|+.|++....+-. ...++++ ..++.+|..... ...++..
T Consensus       186 IVi~aT~s~~pvl~-~~~l~~G-~~V~~vGs~~p~-~~El~~~  225 (313)
T 3hdj_A          186 IVVTATRSTTPLFA-GQALRAG-AFVGAIGSSLPH-TRELDDE  225 (313)
T ss_dssp             EEEECCCCSSCSSC-GGGCCTT-CEEEECCCSSTT-CCCCCHH
T ss_pred             EEEEccCCCCcccC-HHHcCCC-cEEEECCCCCCc-hhhcCHH
Confidence            99999886531111 2467886 888888875432 2345543

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=94.48  E-value=0.41  Score=44.48  Aligned_cols=129  Identities=15%  Similarity=0.100  Sum_probs=80.5

Q ss_pred             EEEEEccchhHHHHHHHHHHc--------CCcEEE-EEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLC--------GATRII-GVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~--------g~~~Vi-~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +|.|+|.|.+|...+...+..        ++ +|+ +.++++++.+ +++++|...++.       ++.+.+.+   ..+
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~-~l~av~d~~~~~a~~~a~~~g~~~~~~-------d~~~ll~~---~~i   76 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSAPRFFDLPLHP-DLNVLCGRDAEAVRAAAGKLGWSTTET-------DWRTLLER---DDV   76 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHHHHSCCSSEE-EEEEEECSSHHHHHHHHHHHTCSEEES-------CHHHHTTC---TTC
T ss_pred             cEEEEcCCHHHHHHHHHHHhCccccccccCc-eEEEEEcCCHHHHHHHHHHcCCCcccC-------CHHHHhcC---CCC
Confidence            789999999998766554432        23 444 4466666654 456788876652       33333321   289


Q ss_pred             cEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH------H----hcCcEEEEeeecCCCccCcHHHH
Q 016507          274 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV------L----HSGKILMGSLFGGLKAKSDIPIL  343 (388)
Q Consensus       274 dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~------~----~~~~~i~g~~~~~~~~~~~~~~~  343 (388)
                      |+|+-|+......+.+..++..  |+=|++-     +++..+....      .    .+++.+.-.....  ....++.+
T Consensus        77 DaV~I~tP~~~H~~~~~~al~a--GkhVl~E-----KPla~t~~ea~~l~~~~~~~~~~g~~~~v~~~~R--~~p~~~~~  147 (390)
T 4h3v_A           77 QLVDVCTPGDSHAEIAIAALEA--GKHVLCE-----KPLANTVAEAEAMAAAAAKAAAGGIRSMVGFTYR--RVPAIALA  147 (390)
T ss_dssp             SEEEECSCGGGHHHHHHHHHHT--TCEEEEE-----SSSCSSHHHHHHHHHHHHHHHHTTCCEEEECGGG--GSHHHHHH
T ss_pred             CEEEEeCChHHHHHHHHHHHHc--CCCceee-----cCcccchhHHHHHHHHHHHHHhcCCceEEEeeec--cCchHHHH
Confidence            9999999998889999999987  5555563     4445554331      1    1344433222122  23567888


Q ss_pred             HHHHhCCCC
Q 016507          344 LKRYMDKEL  352 (388)
Q Consensus       344 ~~~~~~~~~  352 (388)
                      .+++.+|.+
T Consensus       148 k~~i~~g~i  156 (390)
T 4h3v_A          148 RKLVADGKI  156 (390)
T ss_dssp             HHHHHTTSS
T ss_pred             HHHHHcCCC
Confidence            899999865

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=94.47  E-value=0.053  Score=47.50  Aligned_cols=81  Identities=20%  Similarity=0.160  Sum_probs=47.4

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEc-CCchHH-H---HHHHcCCcE-EE--cCCCCCCccHHHHHHhhc
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKF-E---IGKRFGVTE-FV--NSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~-~~~~~~-~---~~~~lga~~-v~--~~~~~~~~~~~~~i~~~~  269 (388)
                      ..++.+|||+|+ |.+|.+.++.+...|+ +|++++ ++.++. +   .++..+... .+  |-.+  .+.+.+.+.+..
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   86 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGF-RVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGD--WDSTKQAFDKVK   86 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTE-EEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCC--HHHHHHHHHHHH
Confidence            356788999987 9999999988888899 788776 444332 2   223334322 22  2222  122333332221


Q ss_pred             --CCCccEEEEccCC
Q 016507          270 --DGGADYCFECVGL  282 (388)
Q Consensus       270 --~g~~dvvid~~g~  282 (388)
                        .+++|++|++.|.
T Consensus        87 ~~~g~id~lv~~Ag~  101 (256)
T 3ezl_A           87 AEVGEIDVLVNNAGI  101 (256)
T ss_dssp             HHTCCEEEEEECCCC
T ss_pred             HhcCCCCEEEECCCC
Confidence              2379999999873

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=94.46  E-value=0.23  Score=41.84  Aligned_cols=99  Identities=15%  Similarity=0.108  Sum_probs=62.0

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-CC-----------------cEEEcCCCC
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GV-----------------TEFVNSKNC  256 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-ga-----------------~~v~~~~~~  256 (388)
                      ....+.++.+||.+|.|. |..+..+++. |+ +|++++.+++-.+.+++. +.                 -.++..+- 
T Consensus        16 ~~l~~~~~~~vLD~GCG~-G~~~~~la~~-g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~-   91 (203)
T 1pjz_A           16 SSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF-   91 (203)
T ss_dssp             HHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC-
T ss_pred             HhcccCCCCEEEEeCCCC-cHhHHHHHHC-CC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcc-
Confidence            445677899999998755 6667777776 88 999999999888877653 21                 01111111 


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCC----H----HHHHHHHHHhhcCCceEEEEc
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGL----A----SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~----~----~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ..-.+.+      .+.||+|++...-    .    ..+..+.+.|+++ |+++.+.
T Consensus        92 ~~l~~~~------~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkpg-G~~~l~~  140 (203)
T 1pjz_A           92 FALTARD------IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLIT  140 (203)
T ss_dssp             SSSTHHH------HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEE
T ss_pred             ccCCccc------CCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCC-cEEEEEE
Confidence            0011110      0279999973321    1    2367888999997 9844443

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.46  E-value=0.14  Score=45.98  Aligned_cols=72  Identities=15%  Similarity=0.179  Sum_probs=51.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-------CCcEEEcCCCCCCccHHHHHHhhcCCC
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-------GVTEFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-------ga~~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      ..-.+|.|+|+|.+|...++.+. .|+ +|++.++++++.+.+.+.       ++...   .+     +.+ +     .+
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~-~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~---~~-----~~~-~-----~~   73 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKH-EVVLQDVSEKALEAAREQIPEELLSKIEFT---TT-----LEK-V-----KD   73 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTS-EEEEECSCHHHHHHHHHHSCGGGGGGEEEE---SS-----CTT-G-----GG
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCC-EEEEEECCHHHHHHHHHHHHHHHhCCeEEe---CC-----HHH-H-----cC
Confidence            34578999999999998777777 899 999999999988877665       22211   11     111 1     17


Q ss_pred             ccEEEEccCCHHHHH
Q 016507          273 ADYCFECVGLASLVQ  287 (388)
Q Consensus       273 ~dvvid~~g~~~~~~  287 (388)
                      .|+||+|+.....+.
T Consensus        74 aDlVieavpe~~~vk   88 (293)
T 1zej_A           74 CDIVMEAVFEDLNTK   88 (293)
T ss_dssp             CSEEEECCCSCHHHH
T ss_pred             CCEEEEcCcCCHHHH
Confidence            899999999876443

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.45  E-value=0.36  Score=41.97  Aligned_cols=88  Identities=14%  Similarity=0.161  Sum_probs=58.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchH--------------HH-HHHHcCCcEEEcCCCCCCccHHHHH
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK--------------FE-IGKRFGVTEFVNSKNCGDKSVSQII  265 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~--------------~~-~~~~lga~~v~~~~~~~~~~~~~~i  265 (388)
                      .+.+|.|+|+|.+|.+.++.+...|. +|++.++++++              .+ ++..++....        .+..+.+
T Consensus        18 ~~~kIgiIG~G~mG~alA~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~e~~   88 (245)
T 3dtt_A           18 QGMKIAVLGTGTVGRTMAGALADLGH-EVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHL--------AAFADVA   88 (245)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEE--------EEHHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCC-EEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceec--------cCHHHHH
Confidence            45789999999999999998888898 89999998876              22 2333443222        2333333


Q ss_pred             HhhcCCCccEEEEccCCHHHHHHH----HHHhhcCCceEEEEc
Q 016507          266 IDMTDGGADYCFECVGLASLVQEA----YACCRKGWGKTIVLG  304 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~~~~~~~----~~~l~~~~G~~v~~g  304 (388)
                      .     ..|+||-|+........+    ...+ ++ ..++.++
T Consensus        89 ~-----~aDvVilavp~~~~~~~~~~i~~~~l-~g-~ivi~~s  124 (245)
T 3dtt_A           89 A-----GAELVVNATEGASSIAALTAAGAENL-AG-KILVDIA  124 (245)
T ss_dssp             H-----HCSEEEECSCGGGHHHHHHHHCHHHH-TT-SEEEECC
T ss_pred             h-----cCCEEEEccCcHHHHHHHHHhhhhhc-CC-CEEEECC
Confidence            2     579999999977533222    2233 54 5666665

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.43  E-value=0.15  Score=45.61  Aligned_cols=73  Identities=22%  Similarity=0.149  Sum_probs=49.1

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcC-CcEEEEEcCCchHH--HHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCG-ATRIIGVDVISEKF--EIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g-~~~Vi~~~~~~~~~--~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      ..+|||+|+ |.+|...++.+...| + +|+++++++++.  +.+...++..+ .|..+   .   +.+.+... ++|+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~-~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d---~---~~l~~~~~-~~d~v   76 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTF-KVRVVTRNPRKKAAKELRLQGAEVVQGDQDD---Q---VIMELALN-GAYAT   76 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSS-EEEEEESCTTSHHHHHHHHTTCEEEECCTTC---H---HHHHHHHT-TCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCc-eEEEEEcCCCCHHHHHHHHCCCEEEEecCCC---H---HHHHHHHh-cCCEE
Confidence            468999998 999999998887777 7 899998887653  23334455433 23332   2   23333332 69999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |.+.+.
T Consensus        77 i~~a~~   82 (299)
T 2wm3_A           77 FIVTNY   82 (299)
T ss_dssp             EECCCH
T ss_pred             EEeCCC
Confidence            999874

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=94.42  E-value=0.087  Score=48.12  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=46.5

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-HHHHHHc-CCcEE-EcCCCCCCccHHHHHHhhcCC-CccEE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-FEIGKRF-GVTEF-VNSKNCGDKSVSQIIIDMTDG-GADYC  276 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-~~~~~~l-ga~~v-~~~~~~~~~~~~~~i~~~~~g-~~dvv  276 (388)
                      +.+|||+|+ |.+|..+++.+...|+ +|+++++++.. .+.+..+ ++..+ .|-.+   .+   .+.+...+ .+|+|
T Consensus        21 ~~~vlVTGatG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d---~~---~~~~~~~~~~~D~v   93 (333)
T 2q1w_A           21 MKKVFITGICGQIGSHIAELLLERGD-KVVGIDNFATGRREHLKDHPNLTFVEGSIAD---HA---LVNQLIGDLQPDAV   93 (333)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCGGGSCCCTTEEEEECCTTC---HH---HHHHHHHHHCCSEE
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCCccchhhHhhcCCceEEEEeCCC---HH---HHHHHHhccCCcEE
Confidence            568999997 9999999988888898 99999886532 2222221 22211 23222   22   22222222 69999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++.+.
T Consensus        94 ih~A~~   99 (333)
T 2q1w_A           94 VHTAAS   99 (333)
T ss_dssp             EECCCC
T ss_pred             EECcee
Confidence            999874

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=94.42  E-value=0.13  Score=46.53  Aligned_cols=91  Identities=11%  Similarity=0.155  Sum_probs=56.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc------hHHHHHH---HcCCcEE-EcCCCCCCccHHHHHHhhcCC
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS------EKFEIGK---RFGVTEF-VNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~------~~~~~~~---~lga~~v-~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      .+|||+|+ |.+|...++.+...|+ +|+++++++      ++.+.+.   ..++..+ .|..+   .   +.+.+... 
T Consensus         5 ~~ilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d---~---~~l~~a~~-   76 (321)
T 3c1o_A            5 EKIIIYGGTGYIGKFMVRASLSFSH-PTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEE---H---EKMVSVLK-   76 (321)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTC-CEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTC---H---HHHHHHHT-
T ss_pred             cEEEEEcCCchhHHHHHHHHHhCCC-cEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCC---H---HHHHHHHc-
Confidence            57999997 9999999998888898 899888875      3333332   3355433 23332   2   23333332 


Q ss_pred             CccEEEEccCCH--HHHHHHHHHhhcC--CceEE
Q 016507          272 GADYCFECVGLA--SLVQEAYACCRKG--WGKTI  301 (388)
Q Consensus       272 ~~dvvid~~g~~--~~~~~~~~~l~~~--~G~~v  301 (388)
                      ++|+||++.+..  .....+++.+...  -++++
T Consensus        77 ~~d~vi~~a~~~~~~~~~~l~~aa~~~g~v~~~v  110 (321)
T 3c1o_A           77 QVDIVISALPFPMISSQIHIINAIKAAGNIKRFL  110 (321)
T ss_dssp             TCSEEEECCCGGGSGGGHHHHHHHHHHCCCCEEE
T ss_pred             CCCEEEECCCccchhhHHHHHHHHHHhCCccEEe
Confidence            699999998753  1134455555443  13666

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=94.42  E-value=0.12  Score=48.41  Aligned_cols=80  Identities=20%  Similarity=0.248  Sum_probs=48.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHH-cCCcEEEEEcCCchH----------------HHHHHHcCCcEE-E--cCCCCCC
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARL-CGATRIIGVDVISEK----------------FEIGKRFGVTEF-V--NSKNCGD  258 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~-~g~~~Vi~~~~~~~~----------------~~~~~~lga~~v-~--~~~~~~~  258 (388)
                      ..+.++||+|+ +++|.+.++.+.. .|+ +|++++++.+.                .+.++..|.... +  |-.+  .
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA-~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd--~  121 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGA-DTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFS--D  121 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCC-EEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTS--H
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCC-EEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCC--H
Confidence            44677888887 9999998877777 899 88888765432                123444554332 2  3222  1


Q ss_pred             ccHHHHHHhhc--CCCccEEEEccCC
Q 016507          259 KSVSQIIIDMT--DGGADYCFECVGL  282 (388)
Q Consensus       259 ~~~~~~i~~~~--~g~~dvvid~~g~  282 (388)
                      +...+.+.+..  -|++|+++++.|.
T Consensus       122 ~~v~~~v~~i~~~~G~IDiLVNNAG~  147 (405)
T 3zu3_A          122 EIKQLTIDAIKQDLGQVDQVIYSLAS  147 (405)
T ss_dssp             HHHHHHHHHHHHHTSCEEEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEcCcc
Confidence            22222222221  2479999999876

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=94.40  E-value=0.12  Score=47.10  Aligned_cols=72  Identities=17%  Similarity=0.128  Sum_probs=45.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHH-cCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKR-FGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~-lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +|||+|+ |.+|..+++.+... |+ +|+++++++++.+.+.. .++..+ .|-.+  ..+..+.+.+    ++|+||++
T Consensus         2 ~vlVtGatG~iG~~l~~~L~~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~----~~d~vih~   74 (345)
T 2bll_A            2 RVLILGVNGFIGNHLTERLLREDHY-EVYGLDIGSDAISRFLNHPHFHFVEGDISI--HSEWIEYHVK----KCDVVLPL   74 (345)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTC-EEEEEESCCGGGGGGTTCTTEEEEECCTTT--CSHHHHHHHH----HCSEEEEC
T ss_pred             eEEEECCCcHHHHHHHHHHHHhCCC-EEEEEeCCcchHHHhhcCCCeEEEeccccC--cHHHHHhhcc----CCCEEEEc
Confidence            6999997 99999999888877 88 89999988766543322 122222 12221  1122222211    68999998


Q ss_pred             cCC
Q 016507          280 VGL  282 (388)
Q Consensus       280 ~g~  282 (388)
                      .+.
T Consensus        75 A~~   77 (345)
T 2bll_A           75 VAI   77 (345)
T ss_dssp             BCC
T ss_pred             ccc
Confidence            763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	388
d1cdoa1	199	b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase	1e-41
d1d1ta2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	1e-37
d1p0fa1	198	b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydro	6e-37
d2fzwa1	197	b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase	6e-37
d1p0fa2	174	c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog	3e-36
d2jhfa2	176	c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (	1e-33
d1e3ia1	202	b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase	4e-33
d2jhfa1	198	b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase	2e-32
d1e3ia2	174	c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (	2e-31
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	1e-30
d1f8fa2	174	c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {	2e-30
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	7e-29
d1f8fa1	194	b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydr	7e-22
d1llua1	175	b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase	2e-19
d1uufa1	179	b.35.1.2 (A:3-144,A:313-349) Hypothetical protein	3e-19
d1piwa1	192	b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehy	7e-19
d1vj0a1	184	b.35.1.2 (A:2-155,A:338-367) Hypothetical protein	6e-18
d1pl8a1	185	b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sor	9e-18
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	2e-17
d1jvba1	177	b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase	1e-14
d1e3ja1	178	b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sor	2e-14
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	4e-13
d1kola1	201	b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrog	6e-13
d1jqba1	177	b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secon	6e-13
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	2e-12
d1h2ba1	171	b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenas	5e-12
d1rjwa1	171	b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase	1e-11
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	4e-11
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	3e-09
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	2e-08
d1uufa2	168	c.2.1.1 (A:145-312) Hypothetical protein YahK {Esc	8e-07
d1piwa2	168	c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase	9e-06
d1iz0a1	131	b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase	1e-05
d1gu7a1	175	b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA redu	0.002

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 199

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  143 bits (360), Expect = 1e-41
 Identities = 70/199 (35%), Positives = 109/199 (54%), Gaps = 1/199 (0%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AA+A    +PLVI+E+ VD P+++E+R++II T +CH+D+           
Sbjct: 2   TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDG 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP +LGHE  G+VESVG  V     G+ VIP F++ C EC  C+S K N C       SP
Sbjct: 62  FPVVLGHEGAGIVESVGPGVTEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESP 121

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +   + +RF   +G  +  F+  S+FS+YTV++   V K+DP+V  +        + + 
Sbjct: 122 DVMSPKETRF-TCKGRKVLQFLGTSTFSQYTVVNQIAVAKIDPSVKLDEFITHRMPLESV 180

Query: 190 VGAAWRTANVEVGSTVVIF 208
             A     + +   TV+  
Sbjct: 181 NDAIDLMKHGKCIRTVLSL 199

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  131 bits (331), Expect = 1e-37
 Identities = 68/177 (38%), Positives = 106/177 (59%), Gaps = 2/177 (1%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
            PP + CL+ CG STG GAA +T  V+ GST V+FGLG +GL+V  G +  GA+RIIG+D
Sbjct: 2   APPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGID 61

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 293
           +  +KFE     G TE ++ K+   K +S+++ +MT     Y FE +G    + +A A C
Sbjct: 62  LNKDKFEKAMAVGATECISPKD-STKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASC 120

Query: 294 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDK 350
              +G ++V+GV      L+     +L +G+   G +FGGLK++ D+P L+  ++ K
Sbjct: 121 HMNYGTSVVVGVPPSAKMLTYDPM-LLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAK 176

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  130 bits (328), Expect = 6e-37
 Identities = 74/208 (35%), Positives = 108/208 (51%), Gaps = 12/208 (5%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I C+AA+A  P +PL ++ + V PP +HEVR++I+ + +C SD +    +  P+ 
Sbjct: 2   TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVL-KEIIPSK 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
           FP ILGHEA+GVVES+G  V  V  GD VIP F+  C  C  C+S   N C         
Sbjct: 61  FPVILGHEAVGVVESIGAGVTCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKT 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
            +  D TSRF   RG+ I++ +  S+F+EYTV+    V K+DP +  N            
Sbjct: 121 GLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAKIDPKINVNFL---------- 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAV 217
           V        +     ++  G G   + +
Sbjct: 170 VSTKLTLDQINKAFELLSSGQGVRSIMI 197

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 197

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  130 bits (328), Expect = 6e-37
 Identities = 76/197 (38%), Positives = 107/197 (54%), Gaps = 1/197 (0%)

Query: 11  AGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVF 70
           A + I+C+AA+A   G+PL I+E+ V PP +HEVR++II T++CH+D       D    F
Sbjct: 1   ANEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCF 60

Query: 71  PRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPW 130
           P ILGH   G+VESVGE V  +  GD VIP ++  C EC  C + K NLC          
Sbjct: 61  PVILGHLGAGIVESVGEGVTKLKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKG 120

Query: 131 MPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGV 190
           +  D TSRF   +G+TI H++  S+FSEYTV+    V K+DP +  +     +       
Sbjct: 121 LMPDGTSRF-TCKGKTILHYMGTSTFSEYTVVADISVAKIDPLIKVDEFVTHNLSFDEIN 179

Query: 191 GAAWRTANVEVGSTVVI 207
            A     + +   TVV 
Sbjct: 180 KAFELMHSGKSIRTVVK 196

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

 Score =  128 bits (322), Expect = 3e-36
 Identities = 70/176 (39%), Positives = 99/176 (56%), Gaps = 3/176 (1%)

Query: 176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI 235
           P  +CL+ CG +TG GAA  TA V  GST  +FGLG +G +   G +  GA+RIIGV   
Sbjct: 2   PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH 61

Query: 236 SEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRK 295
            +KF      G TE +N K+  DK + ++I + T+GG DY  EC G    +  A      
Sbjct: 62  KDKFPKAIELGATECLNPKD-YDKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYC 120

Query: 296 GWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 351
           G G T+VLG+  P  +L L    +L +G+ L GS+FGG K + ++  L+  YM K+
Sbjct: 121 GSGVTVVLGLASPNERLPLDPL-LLLTGRSLKGSVFGGFKGE-EVSRLVDDYMKKK 174

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  121 bits (303), Expect = 1e-33
 Identities = 68/177 (38%), Positives = 108/177 (61%), Gaps = 2/177 (1%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P  + CL+ CG STG G+A + A V  GST  +FGLG +GL+V  G +  GA RIIGVD+
Sbjct: 2   PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDI 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 294
             +KF   K  G TE VN ++   K + +++ +M++GG D+ FE +G    +  A +CC+
Sbjct: 62  NKDKFAKAKEVGATECVNPQD-YKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQ 120

Query: 295 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 351
           + +G ++++G   P SQ    +  +L SG+   G++FGG K+K  +P L+  +M K+
Sbjct: 121 EAYGVSVIVG-VPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKK 176

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 202

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  120 bits (302), Expect = 4e-33
 Identities = 69/201 (34%), Positives = 102/201 (50%), Gaps = 7/201 (3%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           T GK I+C+AAIA   G PL I+E+ V PP + EVR+++I T +C +D+         A+
Sbjct: 2   TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINAT-DPKKKAL 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLC---SAFPFK 126
           FP +LGHE  G+VESVG  V     GD VIP F   C  C  C S   NLC     F + 
Sbjct: 61  FPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYP 120

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
                  +  +     +G +I+HF+ VSSFS+YTV+  A++ +VD     +     +   
Sbjct: 121 TIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEFDLDLLVTHALPF 180

Query: 187 STGVGAAWRTANVEVGSTVVI 207
            +   A      ++ G ++  
Sbjct: 181 ESINDAI---DLMKEGKSIRT 198

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} Length = 198

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

 Score =  119 bits (298), Expect = 2e-32
 Identities = 73/200 (36%), Positives = 100/200 (50%), Gaps = 5/200 (2%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           TAGK I+C+AA+     +P  I+EV V PP +HEVR++++ T +C SD            
Sbjct: 2   TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSG-TLVTP 60

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P I GHEA G+VES+GE V  V  GD VIP F   C +C  C+  +GN C      +  
Sbjct: 61  LPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPR 120

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
              +D TSRF   RG+ IHHF+  S+FS+YTV+D   V K+D          L   V   
Sbjct: 121 GTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAKIDAAFA---LDPLITHVLPF 176

Query: 190 VGAAWRTANVEVGSTVVIFG 209
                    +  G ++    
Sbjct: 177 EKINEGFDLLRSGESIRTIL 196

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

 Score =  115 bits (289), Expect = 2e-31
 Identities = 66/177 (37%), Positives = 101/177 (57%), Gaps = 4/177 (2%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
              R CL+ CG S+G GAA  TA V  GST  +FGLG +GL+   G ++ GA+RII +D+
Sbjct: 2   NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 294
             EKF   K  G T+ +N +   DK V  +I ++T GG DY  +C G A  ++ A  C  
Sbjct: 62  NGEKFPKAKALGATDCLNPREL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTV 120

Query: 295 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 351
            GWG   V+G      ++++ + +V+  G+ + G+ FGG K+   +P L+  Y +K+
Sbjct: 121 LGWGSCTVVGA--KVDEMTIPTVDVIL-GRSINGTFFGGWKSVDSVPNLVSDYKNKK 174

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score =  113 bits (283), Expect = 1e-30
 Identities = 78/177 (44%), Positives = 114/177 (64%), Gaps = 2/177 (1%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P ++ CLL CG+STG GAA  TA +E GS   +FGLG +GLAV  G ++ GA+RIIGVD+
Sbjct: 2   PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDI 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 294
             +KF   K FG TE +N ++   K + +++I+MTDGG DY FEC+G   +++ A   C 
Sbjct: 62  NKDKFARAKEFGATECINPQD-FSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACH 120

Query: 295 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 351
           KGWG ++V+GV   G +++   F  L +G+   G+ FGG K+   +P L+  YM K+
Sbjct: 121 KGWGVSVVVGVAASGEEIATRPF-QLVTGRTWKGTAFGGWKSVESVPKLVSEYMSKK 176

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score =  113 bits (282), Expect = 2e-30
 Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           VP      L CG+ TG GA      V   S+ V +G G++GL+    A++CGA+ II VD
Sbjct: 1   VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVD 60

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 293
           ++  + E+ K+ G T  +NSK    +     I ++TDGG ++  E  G   ++++     
Sbjct: 61  IVESRLELAKQLGATHVINSK---TQDPVAAIKEITDGGVNFALESTGSPEILKQGVDAL 117

Query: 294 RKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 351
               GK  V+G  Q G+       ++L  GK ++G + G    K  IP L++ Y   +
Sbjct: 118 GI-LGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIPELVRLYQQGK 174

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score =  108 bits (270), Expect = 7e-29
 Identities = 77/177 (43%), Positives = 107/177 (60%), Gaps = 3/177 (1%)

Query: 175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV 234
           P +  CLL CGVSTG GAA  TA VE GST  +FGLG++GLA   G    GA RII VD+
Sbjct: 2   PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDL 61

Query: 235 ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR 294
             +KFE  K FG T+FVN  +   + +SQ++  MT+GG D+  ECVG   +++ A   C 
Sbjct: 62  NPDKFEKAKVFGATDFVNPND-HSEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCL 120

Query: 295 KGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE 351
           KGWG ++++G          +    L +G+   GS+FGG K K  +P ++K Y+DK+
Sbjct: 121 KGWGVSVLVGW--TDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} Length = 194

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

 Score = 90.0 bits (222), Expect = 7e-22
 Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 3/191 (1%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
            AA+    G    +  + +  P   EV V+++ T +CH+D+     K      P +LGHE
Sbjct: 5   IAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHE 63

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
             G++E++G NV  +  GD V+  +   C +C  C +     CS F  +       +   
Sbjct: 64  GSGIIEAIGPNVTELQVGDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNH 122

Query: 138 RF-KDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWRT 196
                 +G    HF + SSF+ Y +    + VKV    P ++             A    
Sbjct: 123 ALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKDFPFDQLVKFYAFDEINQAAIDSR 182

Query: 197 ANVEVGSTVVI 207
             + +   + I
Sbjct: 183 KGITLKPIIKI 193

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 83.0 bits (204), Expect = 2e-19
 Identities = 49/196 (25%), Positives = 71/196 (36%), Gaps = 26/196 (13%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPR 72
           P   +AA+  A G PL I+EV V  P   +V V+I  + +CH+D+   +         P 
Sbjct: 3   PQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPF 62

Query: 73  ILGHEAIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
           I GHE +G V +VG  V  V EGD V IP     C  C  C +    LC +         
Sbjct: 63  IPGHEGVGYVAAVGSGVTRVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQNTGYSVN 122

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVG 191
                                     EY + D  +V  +   V           ++  + 
Sbjct: 123 GGYA----------------------EYVLADPNYVGILPKNVKATIHPGKLDDINQILD 160

Query: 192 AAWRTANVEVGSTVVI 207
              R   +E G  V+ 
Sbjct: 161 QM-RAGQIE-GRIVLE 174

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 179

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 82.3 bits (202), Expect = 3e-19
 Identities = 37/191 (19%), Positives = 72/191 (37%), Gaps = 16/191 (8%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +A  A +  +PL   ++    P  ++V++ I    +CHSD+   + +    V+P + GHE
Sbjct: 2   KAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHE 61

Query: 78  AIGVVESVGENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQT 136
            +G V +VG+ V+    GD V +   +  C  C  C     N C       +   P +  
Sbjct: 62  IVGRVVAVGDQVEKYAPGDLVGVGCIVDSCKHCEECEDGLENYCDHMTGTYNSPTPDEPG 121

Query: 137 SRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPP-NRACLLSCGVSTGVGAAWR 195
                              +S+  V+   +V+++        RA  ++      +    +
Sbjct: 122 HTLG--------------GYSQQIVVHERYVLRIRVADIEMIRADQINEAYERMLRGDVK 167

Query: 196 TANVEVGSTVV 206
              V    T+ 
Sbjct: 168 YRFVIDNRTLT 178

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 192

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.8 bits (201), Expect = 7e-19
 Identities = 35/200 (17%), Positives = 67/200 (33%), Gaps = 20/200 (10%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPP--NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           P +       +  +     +   DP     H++ ++I    +C SD+            P
Sbjct: 4   PEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMP 63

Query: 72  RILGHEAIGVVESVG-ENVDGVVEGD-VVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            ++GHE +G V  +G ++  G+  G  V +   +  C EC  C++     C+ F    S 
Sbjct: 64  LVVGHEIVGKVVKLGPKSNSGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYSQ 123

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                               +VS   ++ Y  +    VV +   +      +   GV   
Sbjct: 124 PYE---------------DGYVSQGGYANYVRVHEHFVVPIPENIWVETLPVGEAGVHEA 168

Query: 190 VGAAWRTANVEVGSTVVIFG 209
                   +V    T+V + 
Sbjct: 169 F-ERMEKGDVRYRFTLVGYD 187

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 184

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 78.7 bits (193), Expect = 6e-18
 Identities = 42/202 (20%), Positives = 69/202 (34%), Gaps = 28/202 (13%)

Query: 14  PIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRI 73
            ++  A +     +PLV  E  +       + V I+   +C SDV  ++ +D     P I
Sbjct: 2   GLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPII 61

Query: 74  LGHEAIGVVESVGENVDGVVEGD-----VVIPHFLADCTECVGCRS-KKGNLCSAFPFKI 127
           LGHE  G V  V      +         +++ +    C EC  C+  K+  LC       
Sbjct: 62  LGHEGAGRVVEVNGEKRDLNGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV-- 119

Query: 128 SPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-VVKVDPTVPPNRACLLSCGV 186
             +      S +  LRG           +S + VLD    V+KV   +       L    
Sbjct: 120 --YGINRGCSEYPHLRG----------CYSSHIVLDPETDVLKVSEKITHRLP--LKEAN 165

Query: 187 STGVGAAWRTANVEVGSTVVIF 208
                 A           V+++
Sbjct: 166 -----KALELMESREALKVILY 182

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.4 bits (192), Expect = 9e-18
 Identities = 44/201 (21%), Positives = 74/201 (36%), Gaps = 29/201 (14%)

Query: 10  TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMK---DF 66
            A KP    + +   PG+ L ++   +  P  +EV +R+    +C SDV +W+     +F
Sbjct: 2   AAAKP-NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNF 59

Query: 67  PAVFPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFK 126
               P +LGHEA G VE VG +V  +  GD V     A       C+  + NL  +  F 
Sbjct: 60  IVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFC 119

Query: 127 ISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGV 186
            +P                         +   +   + A   K+   V P          
Sbjct: 120 ATPPDDG---------------------NLCRFYKHNAAFCYKLPDNVKPLVTHRFPLEK 158

Query: 187 STGVGAAWRTANVEVGSTVVI 207
           +     A+ T    +G  +++
Sbjct: 159 AL---EAFETFKKGLGLKIML 176

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 77.3 bits (189), Expect = 2e-17
 Identities = 43/173 (24%), Positives = 77/173 (44%), Gaps = 6/173 (3%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           +P   A +++  ++TG   A   A++E+GS+VV+ G+G++GL    GA+L GA RIIGV 
Sbjct: 1   MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG 59

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACC 293
                 E  K +G T+ +N          Q++      G D      G +  + +A    
Sbjct: 60  SRPICVEAAKFYGATDILN--YKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMV 117

Query: 294 RKGWGKTIVLGVDQPGSQLSLS--SFEVLHSGKILMGSLFGGLKAKSDIPILL 344
           + G G    +     G  L +    +    + K + G L  G + +++    +
Sbjct: 118 KPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRLRAERLRDM 169

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 69.2 bits (168), Expect = 1e-14
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 31/198 (15%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK--------MKDFPAV 69
           RA      G+PL + E+ V  P   +V +++    +CHSDV   +        ++D    
Sbjct: 2   RAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVK 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
            P  LGHE  G +E VG+ V G  +GD+V  +       C  CR  + +LC +       
Sbjct: 62  LPVTLGHEIAGKIEEVGDEVVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSP------ 115

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                                    +++EY ++     +     V P     +    +  
Sbjct: 116 ----------------RWLGINFDGAYAEYVIVPHYKYMYKLRRVKPMITKTMKLEEANE 159

Query: 190 VGAAWRTANVEVGSTVVI 207
                      +G  V+I
Sbjct: 160 AIDNLENFKA-IGRQVLI 176

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 178

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 68.9 bits (167), Expect = 2e-14
 Identities = 42/194 (21%), Positives = 74/194 (38%), Gaps = 26/194 (13%)

Query: 19  AAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK---MKDFPAVFPRILG 75
           +A+     + L +++  +  P   EV +++    +C SDV +++   + DF    P ++G
Sbjct: 4   SAVLYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIG 62

Query: 76  HEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           HEA G V  VG+NV  + +GD V       C  C  C+  K NLC    F  +P      
Sbjct: 63  HEASGTVVKVGKNVKHLKKGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFCATPPDD--- 119

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                              + + Y V       K+       +    S  +   V  A+ 
Sbjct: 120 ------------------GNLARYYVHAADFCHKLPDNCNVKQLVTHSFKLEQTVD-AFE 160

Query: 196 TANVEVGSTVVIFG 209
            A  +  +T+ +  
Sbjct: 161 AARKKADNTIKVMI 174

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 65.3 bits (158), Expect = 4e-13
 Identities = 41/192 (21%), Positives = 66/192 (34%), Gaps = 21/192 (10%)

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
              LS  + TG   A   A V  GSTV + G G +GLA A  ARL GA  +I  D+   +
Sbjct: 4   LTCLSDILPTGYHGAVT-AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPAR 62

Query: 239 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGL--------------- 282
               K  G      S    D  + + I  +      D   + VG                
Sbjct: 63  LAHAKAQGFEIADLSL---DTPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAP 119

Query: 283 ASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPI 342
           A+++       R   GK  + G+       ++ +   + S  I  G  +    +      
Sbjct: 120 ATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSFHTGQT 178

Query: 343 LLKRYMDKELEL 354
            + +Y    ++ 
Sbjct: 179 PVMKYNRALMQA 190

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 201

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 64.9 bits (157), Expect = 6e-13
 Identities = 39/217 (17%), Positives = 70/217 (32%), Gaps = 26/217 (11%)

Query: 18  RAAIATAPGEPLVID------EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFP 71
           R  +    G+  V        +        H V ++++ T++C SD    +     A   
Sbjct: 3   RGVVYLGSGKVEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRG-RTTAQVG 61

Query: 72  RILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWM 131
            +LGHE  G V   G +V+ +  GD+V   F   C  C  C+     +C           
Sbjct: 62  LVLGHEITGEVIEKGRDVENLQIGDLVSVPFNVACGRCRSCKEMHTGVC-------LTVN 114

Query: 132 PRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTG 189
           P      +  +              +EY ++  A  +++K+           ++  V   
Sbjct: 115 PARAGGAYGYVDMGDWTG-----GQAEYVLVPYADFNLLKLPDRDKAMEKINIAEVVGVQ 169

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA 226
           V +    A    G     F  G     V +  +   A
Sbjct: 170 VISLDD-APRGYG----EFDAGVPKKFVIDPHKTFSA 201

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 177

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 64.6 bits (156), Expect = 6e-13
 Identities = 35/203 (17%), Positives = 58/203 (28%), Gaps = 33/203 (16%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHE 77
           +        + L   E       S++  VR +  S C SD+              ILGHE
Sbjct: 2   KGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHE 60

Query: 78  AIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTS 137
           A+G V  VG  V     GD VI          +  ++      +           +D   
Sbjct: 61  AVGEVVEVGSEVKDFKPGDRVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDGV- 119

Query: 138 RFKDLRGETIHHFVSVSSFSEYTVLDIA--HVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                             F EY  ++ A  ++      +P +    LS  V+        
Sbjct: 120 ------------------FGEYFHVNDADMNLAI----LPKDVD--LSKLVTHVYHGFDH 155

Query: 196 TANVEVGSTVVIFGLGSIGLAVA 218
                +   +++       L  A
Sbjct: 156 -----IEEALLLMKDKPKDLIKA 173

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.0 bits (152), Expect = 2e-12
 Identities = 40/173 (23%), Positives = 62/173 (35%), Gaps = 3/173 (1%)

Query: 179 ACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK 238
             +  C  +T   A         G TVVI G G +GL     AR  GA  +I +     +
Sbjct: 6   LAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNR 65

Query: 239 FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGW 297
            ++ +  G    +N +    +   + I+D+T G GAD+  E  G +  + E     R+G 
Sbjct: 66  LKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG- 124

Query: 298 GKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSLFGGLKAKSDIPILLKRYMD 349
           G   V GV  P   +    +E L        G              +  R   
Sbjct: 125 GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQ 177

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 61.6 bits (148), Expect = 5e-12
 Identities = 37/194 (19%), Positives = 66/194 (34%), Gaps = 28/194 (14%)

Query: 18  RAAIATAPGEPLVIDEV-IVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
           +AA      +PL I++V         +V VRI    +CH+D+   +      + P++   
Sbjct: 1   KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYT 60

Query: 77  EAIGVVESV---GENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPR 133
                V  +    E V+G+ +GD VI H       C+ CR+ +   C    F        
Sbjct: 61  LGHENVGYIEEVAEGVEGLEKGDPVILHPAVTDGTCLACRAGEDMHCENLEFPGLNIDG- 119

Query: 134 DQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAA 193
                                 F+E+       V+K+   V           ++  +   
Sbjct: 120 ---------------------GFAEFMRTSHRSVIKLPKDVRVEVDIHKLDEINDVLERL 158

Query: 194 WRTANVEVGSTVVI 207
            +   V +G  V+I
Sbjct: 159 EK-GEV-LGRAVLI 170

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 171

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 60.8 bits (146), Expect = 1e-11
 Identities = 46/194 (23%), Positives = 64/194 (32%), Gaps = 28/194 (14%)

Query: 18  RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWK-MKDFPAVFPRILGH 76
           +AA+     EPL I EV     +  EV VRI    +CH+D+             P I GH
Sbjct: 2   KAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGH 61

Query: 77  EAIGVVESVGENVDGV-VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQ 135
           E +G+VE VG  V  + V   V IP   + C  C  C S +  LC               
Sbjct: 62  EGVGIVEEVGPGVTHLKVGDRVGIPWLYSACGHCDYCLSGQETLCEHQKN---------- 111

Query: 136 TSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR 195
                         +     ++EY      +VVK+          L        V     
Sbjct: 112 ------------AGYSVDGGYAEYCRAAADYVVKIPDNTIIEVQPLEKINE---VFDRML 156

Query: 196 TANVEVGSTVVIFG 209
              +  G  V+   
Sbjct: 157 KGQIN-GRVVLTLE 169

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 4e-11
 Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 8/148 (5%)

Query: 182 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           LS G+      A R   V +G  V++ G G IG+     A+  GA +++  D+ + +   
Sbjct: 12  LSVGI-----HACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSK 66

Query: 242 GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTI 301
            K  G    +       + +++ +        +   EC G  + +Q      R G     
Sbjct: 67  AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG---GT 123

Query: 302 VLGVDQPGSQLSLSSFEVLHSGKILMGS 329
           ++ V       ++           + G 
Sbjct: 124 LVLVGLGSEMTTVPLLHAAIREVDIKGV 151

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 53.4 bits (127), Expect = 3e-09
 Identities = 34/172 (19%), Positives = 66/172 (38%), Gaps = 11/172 (6%)

Query: 179 ACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE 237
              L+    T   A  + A  +  G+ V I G+G +G    +  ++     +I +DV  E
Sbjct: 9   MAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEE 68

Query: 238 KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGW 297
           K ++ +R G    V+++      V Q++      G +   + VG  + V        +  
Sbjct: 69  KLKLAERLGADHVVDAR---RDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM- 124

Query: 298 GKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMD 349
           G+ I++G           +  V+ S     GSL G      ++  L+   + 
Sbjct: 125 GRLIIVGYGGELRF---PTIRVISSEVSFEGSLVGNYV---ELHELVTLALQ 170

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 51.5 bits (122), Expect = 2e-08
 Identities = 29/151 (19%), Positives = 52/151 (34%), Gaps = 11/151 (7%)

Query: 182 LSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEI 241
           LS GV      A R A V++G+TV++ G G IGL     A+  GA  +        + E+
Sbjct: 12  LSVGV-----HACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP-RRLEV 65

Query: 242 GKRFGVTEFVN--SKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGK 299
            K  G    +        + S+ + I        +   +C G    +       R   G 
Sbjct: 66  AKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRT-GGT 124

Query: 300 TIVLGVDQPGSQLSLSSFEVLHSGKILMGSL 330
            +++G       +++           +    
Sbjct: 125 LMLVG--MGSQMVTVPLVNACAREIDIKSVF 153

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

 Score = 46.5 bits (109), Expect = 8e-07
 Identities = 30/164 (18%), Positives = 51/164 (31%), Gaps = 11/164 (6%)

Query: 172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIG 231
           P         L C   T      R      G  V + G+G +G    + A       ++ 
Sbjct: 2   PQEQLAAVAPLLCAGITTYSP-LRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVA 59

Query: 232 VDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYA 291
                 K E  K  G  E VNS+N  +               D+    V     + +   
Sbjct: 60  FTTSEAKREAAKALGADEVVNSRNADEM-------AAHLKSFDFILNTVAAPHNLDDFTT 112

Query: 292 CCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 335
             ++  G   ++G        S   F ++   + + GS+ GG+ 
Sbjct: 113 LLKRD-GTMTLVGA-PATPHKSPEVFNLIMKRRAIAGSMIGGIP 154

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (101), Expect = 9e-06
 Identities = 31/163 (19%), Positives = 51/163 (31%), Gaps = 11/163 (6%)

Query: 174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD 233
           +P + A  L CG  T V +         G  V I GLG IG      ++         + 
Sbjct: 1   IPSHLAAPLLCGGLT-VYSPLVRNGCGPGKKVGIVGLGGIGSMGTLISK-AMGAETYVIS 58

Query: 234 VISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLAS-LVQEAYAC 292
             S K E   + G   ++ +   GD        +      D    C    + +       
Sbjct: 59  RSSRKREDAMKMGADHYIATLEEGD------WGEKYFDTFDLIVVCASSLTDIDFNIMPK 112

Query: 293 CRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK 335
             K  G+ + + + +    LSL           +  S  G +K
Sbjct: 113 AMKVGGRIVSISIPEQHEMLSL--KPYGLKAVSISYSALGSIK 153

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} Length = 131

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 18 RAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGH 76
          +A +    G PL + ++        EV +R+    L  +D           + P  +  
Sbjct: 2  KAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPG 60

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 175

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 20/206 (9%), Positives = 41/206 (19%), Gaps = 44/206 (21%)

Query: 15  IQCRAAIATAPGEP-----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAV 69
           I  +A + T  GEP         E+  D    +EV V+ + + +  SD+   +       
Sbjct: 2   ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKP 61

Query: 70  FPRILGHEAIGVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP 129
                                    G         +       +             + P
Sbjct: 62  AKTTGF-------------------GTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIP 102

Query: 130 WMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVPPNRACLLSCGVSTG 189
                                           L         P    ++A     G++  
Sbjct: 103 SHVNFG--------------------TWRTHALGNDDDFIKLPNPAQSKANGKPNGLTDA 142

Query: 190 VGAAWRTANVEVGSTVVIFGLGSIGL 215
                     +    +   G+ +   
Sbjct: 143 KSIETLYDGTKPLHELYQDGVANSKD 168

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	388
d1cdoa1	199	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	100.0
d2fzwa1	197	Alcohol dehydrogenase {Human (Homo sapiens), diffe	100.0
d1e3ia1	202	Alcohol dehydrogenase {Mouse (Mus musculus), class	100.0
d1f8fa1	194	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	100.0
d1llua1	175	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	100.0
d1p0fa1	198	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	100.0
d1e3ja1	178	Ketose reductase (sorbitol dehydrogenase) {Silverl	100.0
d1h2ba1	171	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	100.0
d1vj0a1	184	Hypothetical protein TM0436 {Thermotoga maritima [	100.0
d2jhfa1	198	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	100.0
d1pl8a1	185	Ketose reductase (sorbitol dehydrogenase) {Human (	100.0
d1jqba1	177	Bacterial secondary alcohol dehydrogenase {Clostri	100.0
d1piwa1	192	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	100.0
d1jvba1	177	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	100.0
d1kola1	201	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	100.0
d1rjwa1	171	Alcohol dehydrogenase {Bacillus stearothermophilus	100.0
d1uufa1	179	Hypothetical protein YahK {Escherichia coli [TaxId	100.0
d1yb5a1	150	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.97
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.96
d1qora1	147	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.96
d1xa0a1	152	B. subtilis YhfP homologue {Bacillus stearothermop	99.95
d1iz0a1	131	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.95
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.95
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.95
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.94
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.94
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.94
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.94
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.94
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.93
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.93
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.93
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.93
d1o89a1	146	Hypothetical protein YhdH {Escherichia coli [TaxId	99.93
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.93
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.93
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.93
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.93
d1tt7a1	162	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.92
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.92
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.92
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.92
d1gu7a1	175	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.92
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.91
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.91
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.91
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.9
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.89
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.89
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	99.85
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.83
d1vj1a1	166	Putative zinc-binding alcohol dehydrogenase {Mouse	99.7
d1v3va1	147	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.66
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	99.46
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.94
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.89
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.6
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	97.59
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	97.59
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.38
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	97.3
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	97.24
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.17
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.16
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	97.13
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.13
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.13
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.1
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	97.06
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.02
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.98
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	96.97
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	96.92
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.91
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.89
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	96.89
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	96.88
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.85
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	96.85
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	96.84
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	96.82
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	96.8
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	96.77
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	96.76
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	96.75
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	96.73
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	96.73
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	96.72
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	96.72
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.71
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	96.71
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.7
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	96.66
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	96.63
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	96.6
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	96.59
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.52
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	96.49
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	96.48
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.48
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	96.45
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	96.45
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.43
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	96.4
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	96.4
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	96.39
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	96.38
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	96.37
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	96.35
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.32
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	96.31
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.3
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	96.29
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	96.28
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	96.27
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	96.27
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	96.23
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.18
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	96.16
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	96.15
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	96.13
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	96.12
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.08
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.08
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.07
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	96.05
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	96.04
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.03
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.03
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	96.03
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	96.02
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	95.98
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	95.97
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.96
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	95.94
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	95.85
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	95.85
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.85
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	95.82
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	95.8
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	95.76
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.67
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	95.62
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	95.59
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	95.57
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	95.52
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	95.48
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	95.47
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	95.47
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	95.47
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	95.43
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.41
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	95.33
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.32
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	95.31
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.27
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	95.26
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.22
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	95.18
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	95.18
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	95.12
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.02
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	95.0
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	95.0
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	94.96
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	94.96
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.79
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.72
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.7
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	94.64
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	94.59
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.56
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	94.52
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	94.44
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	94.41
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	94.33
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	94.33
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	94.29
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	94.2
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	94.19
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	94.05
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	94.05
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	93.95
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	93.93
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	93.93
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	93.9
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.88
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	93.84
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	93.84
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.83
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.81
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.8
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	93.75
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.72
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	93.63
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.63
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.55
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.53
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	93.45
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	93.43
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.37
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	93.36
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.32
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	93.24
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	93.22
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	93.22
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	93.2
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.15
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.09
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	93.06
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.05
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.01
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	92.97
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	92.92
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	92.88
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	92.82
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	92.8
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	92.76
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.76
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	92.75
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.69
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	92.67
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.64
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.58
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	92.58
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.56
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	92.53
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	92.48
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.46
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	92.46
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.43
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	92.26
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	92.24
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	92.21
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	91.99
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.97
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	91.96
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	91.95
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	91.94
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.92
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	91.9
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	91.89
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	91.8
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	91.8
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	91.8
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.6
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	91.53
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.53
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.5
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	91.45
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	91.38
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	91.27
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.25
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	91.21
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	91.01
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	90.98
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	90.97
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.93
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.9
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	90.82
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	90.7
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	90.7
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.68
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	90.67
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.64
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.63
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	90.61
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	90.57
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	90.51
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	90.44
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	90.42
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	90.38
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	90.3
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.29
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	90.28
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	90.14
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	89.93
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	89.92
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.9
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	89.89
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	89.84
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.8
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	89.78
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	89.77
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	89.69
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.68
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	89.67
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	89.6
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	89.45
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	89.45
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	89.43
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	89.32
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.27
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	89.25
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	89.12
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	89.07
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	88.9
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	88.86
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	88.75
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	88.66
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	88.65
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	88.65
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.57
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	88.47
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	88.47
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	88.37
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	88.36
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	88.07
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	88.06
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	87.86
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	87.8
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	87.78
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	87.76
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	87.75
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	87.75
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	87.72
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	87.72
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.68
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.63
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.56
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.56
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	87.51
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	87.51
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	87.41
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	87.15
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.12
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.12
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	87.12
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	87.06
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	87.05
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	86.65
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	86.47
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	86.32
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	86.2
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.16
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	86.11
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	86.09
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	85.81
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	85.81
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	85.75
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	85.59
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	85.25
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	85.2
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	85.13
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.09
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	85.02
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	84.93
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	84.77
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.72
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.63
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.5
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	84.38
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	84.29
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	84.26
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	84.24
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	83.9
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	83.61
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	83.54
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	83.52
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	83.52
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	83.39
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	83.39
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	83.3
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	83.29
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	83.22
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	83.16
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	83.13
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	83.04
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	82.73
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	82.56
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	82.54
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	82.54
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	82.47
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	82.41
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	82.34
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	82.31
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	82.19
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	82.13
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	82.08
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	82.04
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	81.98
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	81.94
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.92
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	81.51
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	81.4
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	80.88
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	80.67
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	80.59
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	80.56
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	80.23
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	80.2
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	80.14
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	80.1

>d1cdoa1 b.35.1.2 (A:1-164,A:340-374) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=100.00  E-value=7.9e-40  Score=281.85  Aligned_cols=198  Identities=35%  Similarity=0.561  Sum_probs=178.1

Q ss_pred             CCCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      +..++|++||+++.++++|++++++++|+|+++||||||.|+|||++|++.+.|......+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~kAav~~~~~~pl~i~ev~~P~p~~~eVlIkv~a~giCgsD~~~~~g~~~~~~~p~i~GhE~~G~v~~vG~~v   81 (199)
T d1cdoa1           2 TVGKVIKCKAAVAWEANKPLVIEEIEVDVPHANEIRIKIIATGVCHTDLYHLFEGKHKDGFPVVLGHEGAGIVESVGPGV   81 (199)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTTCCTTSCSEECCCCEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEecCCCCcEEEEEECCCCCCCEEEEEEEEEEEecchhhhhhhcccccccccccccccceEEEEEcCCC
Confidence            56788999999999999999999999999999999999999999999999999987777889999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      ++|++||||++.+...|+.|.+|+.+++++|.+.......+....|..++ ..+|....+....|+||||++++.+++++
T Consensus        82 ~~~~~GdrV~~~~~~~cg~c~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~Ggfaey~~v~~~~~~~  160 (199)
T d1cdoa1          82 TEFQPGEKVIPLFISQCGECRFCQSPKTNQCVKGWANESPDVMSPKETRF-TCKGRKVLQFLGTSTFSQYTVVNQIAVAK  160 (199)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCSCSGGGTCTTTTSCSCCCE-EETTEEEEEGGGTCCSBSEEEEEGGGEEE
T ss_pred             ceecCCCEEEEeeeccccccccccCCCcccccccccccccccccCcccce-eeccceeecccccCCceEEEEEchHHEEE
Confidence            99999999999999999999999999999999887665555555553333 24556666667779999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEE
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~  208 (388)
                      ||++++++++|++.+++.|++.++......+.|++|||+
T Consensus       161 iP~~~~~~~aa~l~~~l~t~~~av~~~~~~~~G~tVlv~  199 (199)
T d1cdoa1         161 IDPSVKLDEFITHRMPLESVNDAIDLMKHGKCIRTVLSL  199 (199)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCCEEEeC
Confidence            999999999999999999999998888888999999984

>d2fzwa1 b.35.1.2 (A:1-162,A:339-373) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=100.00  E-value=2.9e-38  Score=271.06  Aligned_cols=196  Identities=38%  Similarity=0.595  Sum_probs=169.4

Q ss_pred             CCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCC
Q 016507           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        12 ~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      +..|+|||++++++++||+++++|+|+|+++||||||+++|||++|+++++|.+....+|.++|||++|+|+++|++|+.
T Consensus         2 ~~~~~~kAav~~~~g~~l~i~evp~P~p~~~eVLVkv~a~gic~sD~~~~~G~~~~~~~p~v~GhE~~G~V~~vG~~V~~   81 (197)
T d2fzwa1           2 NEVIKCKAAVAWEAGKPLSIEEIEVAPPKAHEVRIKIIATAVCHTDAYTLSGADPEGCFPVILGHLGAGIVESVGEGVTK   81 (197)
T ss_dssp             CCCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTCCTTCCSSBCCCCEEEEEEEEECTTCCS
T ss_pred             CCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEecCCCCcHHHHcCCcccccccccCCcceeeEEEeecCCcee
Confidence            34689999999999999999999999999999999999999999999999998877788999999999999999999999


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      +++||||++.+...|+.|.+|+.++++.|.+.......+...+...++. .+|..+....+.|+||||+++++.+++++|
T Consensus        82 ~~~GdrV~v~~~~~cg~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~-~~g~~v~~~~g~GgfAey~vvp~~~~~~vp  160 (197)
T d2fzwa1          82 LKAGDTVIPLYIPQCGECKFCLNPKTNLCQKIRVTQGKGLMPDGTSRFT-CKGKTILHYMGTSTFSEYTVVADISVAKID  160 (197)
T ss_dssp             CCTTCEEEECSSCCCSCSHHHHCTTCCCCCTTHHHHHTTCCTTSCCSEE-ETTEEEBCCTTTCCSBSEEEEEGGGEEECC
T ss_pred             cCCCCEEEEccccccccccccccCccccCccccccccccccCCccceec-cCCcceecccccccceeEEEechHHEEECC
Confidence            9999999999999999999999999999988655433444444433322 345555556667899999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEE
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~  208 (388)
                      ++++++++|++.+++.|++.++.....-+.+++|||+
T Consensus       161 ~~l~~~~aa~~~~~~~t~~~a~~~~~~g~~~~tvvvi  197 (197)
T d2fzwa1         161 PLIKVDEFVTHNLSFDEINKAFELMHSGKSIRTVVKI  197 (197)
T ss_dssp             TTSCSGGGEEEEEEGGGHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCCHHHHhhhhhHHHHHHHHHHhccCCCcCCEEEeC
Confidence            9999999999999999999876444445678888874

>d1e3ia1 b.35.1.2 (A:1-167,A:342-376) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=100.00  E-value=2.6e-37  Score=267.08  Aligned_cols=195  Identities=38%  Similarity=0.603  Sum_probs=165.7

Q ss_pred             CCCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      +..++|||||+++.++++|++++++|+|+|+++||||||.++|||++|+++++|.++ ..+|.++|||++|+|+++|++|
T Consensus         2 ~~~~~~~~KAaV~~~~g~pl~i~evp~P~p~~geVlVkv~a~gic~sD~~~~~G~~~-~~~P~v~GHE~~G~V~~vG~~V   80 (202)
T d1e3ia1           2 TQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKK-ALFPVVLGHECAGIVESVGPGV   80 (202)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHTTCTTSC-CCSSBCCCCEEEEEEEEECTTC
T ss_pred             CCCCeEEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEeccccceeeeecc-cccccccccccceEEeeecCCc
Confidence            456789999999999999999999999999999999999999999999999999875 4679999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCC---CCC-CCCCccccccCCceecccccccceeeeEEeecC
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISP---WMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIA  165 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~---g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~  165 (388)
                      ++|++||||++.+...|+.|.+|..++.+.|.+.......   +.. ..+..++ ..+|...+...+.|+|+||+++++.
T Consensus        81 ~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~v~~~~~~G~faey~~v~~~  159 (202)
T d1e3ia1          81 TNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRF-TCKGRSIYHFMGVSSFSQYTVVSEA  159 (202)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCCCSSCGGGSSCSCTTSCCSE-EETTEEEBCCTTTCCSBSEEEEEGG
T ss_pred             eeccCCCEEEEEeeccccccccccCCcccccccccccccCccceeccccccccc-ccCceeeecccccCCceEEEEEehh
Confidence            9999999999999999999999999999999987753211   111 1221122 2456666667778999999999999


Q ss_pred             ceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEc
Q 016507          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (388)
Q Consensus       166 ~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~G  209 (388)
                      +++++|++++++.++++.+++.+++.++ .  .+++|++|.|+.
T Consensus       160 ~l~~lP~~~~~~~~~~~~~~~~~~~~a~-~--~~k~G~~V~vi~  200 (202)
T d1e3ia1         160 NLARVDDEFDLDLLVTHALPFESINDAI-D--LMKEGKSIRTIL  200 (202)
T ss_dssp             GEEECCTTSCGGGGEEEEEEGGGHHHHH-H--HHHTTCCSEEEE
T ss_pred             hEEECCCCCCHHHHHHHHHHHHHHHHHH-H--hCCCCCEEEEEE
Confidence            9999999999999999998888887754 3  257899998763

>d1f8fa1 b.35.1.2 (A:4-162,A:337-371) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=100.00  E-value=4.3e-37  Score=262.85  Aligned_cols=191  Identities=25%  Similarity=0.435  Sum_probs=158.2

Q ss_pred             cceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCC
Q 016507           15 IQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVE   94 (388)
Q Consensus        15 ~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~v   94 (388)
                      .+|+|+++.+++++|+++++|+|+|+++|||||+.+++||++|+++++|.++. ++|.++|||++|+|+++|+++++|++
T Consensus         2 k~~~Aav~~~~g~~l~l~~v~~P~p~~geVlVkv~a~gic~sD~~~~~G~~~~-~~P~i~GHE~~G~V~~vG~~v~~~~v   80 (194)
T d1f8fa1           2 KDIIAAVTPCKGADFELQALKIRQPQGDEVLVKVVATGMCHTDLIVRDQKYPV-PLPAVLGHEGSGIIEAIGPNVTELQV   80 (194)
T ss_dssp             EEEEEEEBCSTTCCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCEEEEEEEEECTTCCSCCT
T ss_pred             ceeEEEEEcCCCCCcEEEEeeCCCCCCCEEEEEEEEEEecCchHhhhhhcccc-cCCcccccceEEEeeecCccceeEcc
Confidence            46899999999999999999999999999999999999999999999998764 68999999999999999999999999


Q ss_pred             CCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccc-cCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           95 GDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKD-LRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        95 Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~-~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      ||||+..+ ..|+.|.+|+++++++|++.......|...+|..++.. ..+.........|+|+||.+++..+++++|++
T Consensus        81 GDrVv~~~-~~Cg~C~~C~~g~~~~C~~~~~~~~~g~~~dg~~~~~~~~~~~~~~~~~~~g~fae~~~v~~~~~~~ip~~  159 (194)
T d1f8fa1          81 GDHVVLSY-GYCGKCTQCNTGNPAYCSEFFGRNFSGADSEGNHALCTHDQGVVNDHFFAQSSFATYALSRENNTVKVTKD  159 (194)
T ss_dssp             TCEEEECC-CCCSSSHHHHTTCGGGCTTHHHHSSSSSCSSSCCSBC------CBCCGGGTCCSBSEEEEEGGGEEEECTT
T ss_pred             Cceeeeec-ccccCChhhhCCCcccccccccceeccccccceeeeecCCceeeccccccccccceeEEEehHHEEECCCC
Confidence            99996655 48999999999999999976444445555555333221 12333344556689999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEE
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGV  232 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~  232 (388)
                      ++++++                         ++|.|+|++|++|+|+++.+|+.+|+++
T Consensus       160 i~~~~~-------------------------~~i~g~g~~g~~aiq~a~~~g~~~iiaV  193 (194)
T d1f8fa1         160 FPFDQL-------------------------VKFYAFDEINQAAIDSRKGITLKPIIKI  193 (194)
T ss_dssp             CCGGGG-------------------------EEEEEGGGHHHHHHHHHHTSCSEEEEEC
T ss_pred             CCcccE-------------------------EEEeCcHHHHHHHHHHHHHcCCCEEEEe
Confidence            876543                         4556789999999999999999777765

>d1llua1 b.35.1.2 (A:2-143,A:310-342) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=1.1e-36  Score=257.18  Aligned_cols=173  Identities=28%  Similarity=0.343  Sum_probs=155.6

Q ss_pred             CCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCC
Q 016507           12 GKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVD   90 (388)
Q Consensus        12 ~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~   90 (388)
                      ++|.+|||++++++++|++++++|+|+|++|||||||.|++||++|++.++|.++. ..+|.++|||++|+|+++|++++
T Consensus         1 ~~P~tMkA~v~~~~g~pl~l~evp~P~~~~~evlVkv~a~gic~~D~~~~~G~~~~~~~~P~i~GhE~~G~V~~~G~~v~   80 (175)
T d1llua1           1 TLPQTMKAAVVHAYGAPLRIEEVKVPLPGPGQVLVKIEASGVCHTDLHAAEGDWPVKPPLPFIPGHEGVGYVAAVGSGVT   80 (175)
T ss_dssp             CCCSEEEEEEBCSTTSCCEEEEEECCCCCTTCEEEEEEEEECCHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCC
T ss_pred             CcchhcEEEEEEeCCCCCEEEEeECCCCCCCEEEEEEEEecCcccchhhhccCccccccCCcCCCCcceEEEEEeCCCcc
Confidence            46889999999999999999999999999999999999999999999999998754 56899999999999999999999


Q ss_pred             CCCCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           91 GVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        91 ~~~vGd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      +|++||||++.+. ..|+.|.+|+.++.+.|.+...   .|+..+|                   +|+||+.++++++++
T Consensus        81 ~~~~GdrV~~~~~~~~~g~~~~~~~g~~~~~~~~~~---~G~~~~g-------------------g~aey~~v~~~~~~~  138 (175)
T d1llua1          81 RVKEGDRVGIPWLYTACGCCEHCLTGWETLCESQQN---TGYSVNG-------------------GYAEYVLADPNYVGI  138 (175)
T ss_dssp             SCCTTCEEEECSEEECCSSSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEECTTTSEE
T ss_pred             ccccCCEEEeccccccCCccccccCCcccccccccc---ccccccc-------------------ccceEEEechHHEEE
Confidence            9999999987664 5699999999999999988775   6776666                   999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEE
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~  208 (388)
                      +|++++++.++++.+.+.|++..+ + +...+|++|||+
T Consensus       139 iPd~l~~~~a~~~~~~~~t~~~~~-~-~g~~~G~~VLVl  175 (175)
T d1llua1         139 LPKNVKATIHPGKLDDINQILDQM-R-AGQIEGRIVLEM  175 (175)
T ss_dssp             CCTTCCCCEEEECGGGHHHHHHHH-H-TTCCSSEEEEEC
T ss_pred             CCCCCChhHHHHHHhHHHHHHHHH-H-hCCCCCCEEEeC
Confidence            999999999988888999988854 4 344579999984

>d1p0fa1 b.35.1.2 (A:1001-1163,A:1338-1372) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=100.00  E-value=1.2e-36  Score=261.17  Aligned_cols=195  Identities=37%  Similarity=0.639  Sum_probs=164.2

Q ss_pred             CCCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      +..+.+||||++++++++||+++++|+|+|+++||||||.|+|||++|+++++|.++. .+|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~~~KAav~~~~g~~l~i~ev~~P~p~~~eVlVkv~a~gICgsDlh~~~G~~~~-~~P~i~GHE~~G~Vv~~G~~v   80 (198)
T d1p0fa1           2 TAGKDITCKAAVAWEPHKPLSLETITVAPPKAHEVRIKILASGICGSDSSVLKEIIPS-KFPVILGHEAVGVVESIGAGV   80 (198)
T ss_dssp             CTTSCEEEEEEEBSSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHTTSSCC-CSSBCCCCCEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEccCCCCCEEEEEECCCCCCCEEEEEEEEEEEecccceeeeecccc-ccccccceeeeeeeeecCccc
Confidence            4567899999999999999999999999999999999999999999999999998754 789999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      +++++||||++.+..+|+.|.+|.+++.++|+...+....|...++..++. +++..++.....|+|+||+.++...+++
T Consensus        81 ~~~~~GdrV~~~~~~~Cg~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~g~faey~~v~~~~~~k  159 (198)
T d1p0fa1          81 TCVKPGDKVIPLFVPQCGSCRACKSSNSNFCEKNDMGAKTGLMADMTSRFT-CRGKPIYNLMGTSTFTEYTVVADIAVAK  159 (198)
T ss_dssp             CSCCTTCEEEECSSCCCSSSHHHHCTTCCCCTTCSTTTCCCSCTTSCCSEE-ETTEEEBCSTTTCCSBSEEEEETTSEEE
T ss_pred             ccCcCCCEEEEEeeccccccccccccccccchhhhccccccccCCCceeEe-eCCeeccccCCCccceeeEEecHHHEEE
Confidence            999999999999999999999999999999998887655555555544433 4455555555678999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHH
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLA  216 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~  216 (388)
                      +|++++.+.++...+.+.+          +.++++|||.|+|++|++
T Consensus       160 ip~~~~~~~~~~~~~~~~~----------v~~~~~vlv~G~G~iGl~  196 (198)
T d1p0fa1         160 IDPKINVNFLVSTKLTLDQ----------INKAFELLSSGQGVRSIM  196 (198)
T ss_dssp             ECTTSCGGGGEEEEECGGG----------HHHHHHHTTTSSCSEEEE
T ss_pred             CCCCCCHHHHHHhhcchhh----------cCCCCEEEEECCCcceEE
Confidence            9999998776655544332          223456888898888753

>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=100.00  E-value=7.1e-37  Score=259.05  Aligned_cols=170  Identities=24%  Similarity=0.363  Sum_probs=151.1

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC---CCCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |+|+ ++++++ |+++++|+|+|+++|||||+.+++||++|++++++...   ..++|.++|||++|+|+++|+++++|+
T Consensus         3 maAV-l~g~~~-l~~~e~~~P~~~~~evlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~Vv~vG~~v~~~~   80 (178)
T d1e3ja1           3 LSAV-LYKQND-LRLEQRPIPEPKEDEVLLQMAYVGICGSDVHYYEHGRIADFIVKDPMVIGHEASGTVVKVGKNVKHLK   80 (178)
T ss_dssp             EEEE-EEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSBSSSCBCCSCEECCCEEEEEEEEECTTCCSCC
T ss_pred             eEEE-EEcCCc-EEEEEeECCCCCCCEEEEEEEEEcccCchhhhhccCccccccccCCeeeccccceEEEecCcccCCCC
Confidence            4555 567776 99999999999999999999999999999998887543   245789999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||||++.+..+|+.|..|..++.++|.+..+.  .+...+|                   +|+||+.+++++++++|++
T Consensus        81 ~GdrV~~~~~~~~~~c~~c~~g~~~~c~~~~~~--~~~~~~G-------------------~~aey~~v~~~~~~~iP~~  139 (178)
T d1e3ja1          81 KGDRVAVEPGVPCRRCQFCKEGKYNLCPDLTFC--ATPPDDG-------------------NLARYYVHAADFCHKLPDN  139 (178)
T ss_dssp             TTCEEEECCEECCSSSHHHHTTCGGGCTTCEET--TBTTBCC-------------------SCBSEEEEEGGGEEECCTT
T ss_pred             CCCEEEECcccccCCccccccCCccccccccce--ecccccc-------------------ccceeeeecccceeeCCCC
Confidence            999999999999999999999999999877752  1222344                   9999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  210 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga  210 (388)
                      +++++||++++.+.|||+++ +.+++++|++|||+|+
T Consensus       140 ~~~~~aa~~~~~~~ta~~a~-~~~~~~~g~~VlVig~  175 (178)
T d1e3ja1         140 CNVKQLVTHSFKLEQTVDAF-EAARKKADNTIKVMIS  175 (178)
T ss_dssp             CCCGGGEEEEEEGGGHHHHH-HHHHHCCTTCSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEEcc
Confidence            99999999999999999975 7889999999999986

>d1h2ba1 b.35.1.2 (A:17-154,A:327-359) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=3.4e-36  Score=252.69  Aligned_cols=166  Identities=27%  Similarity=0.418  Sum_probs=152.5

Q ss_pred             eeeeecCCCCCeEEEEeecCCC-CCCeEEEEEceeccCcccccccccCCC---CCCCCcccccceeEEEEEecCCCCCCC
Q 016507           18 RAAIATAPGEPLVIDEVIVDPP-NSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        18 ka~~~~~~~~~~~~~~~~~p~~-~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      ||+++.++++||+++++++|++ +++||||||.|++||++|++.++|..+   .+.+|.++|||++|+|+++|+++++|+
T Consensus         1 kA~~~~~~g~pl~i~~v~~P~~~~~~eVlVkv~a~gic~sD~~~~~g~~~~~~~~~~P~v~GhE~~G~V~~vG~~v~~~~   80 (171)
T d1h2ba1           1 KAARLHEYNKPLRIEDVDYPRLEGRFDVIVRIAGAGVCHTDLHLVQGMWHELLQPKLPYTLGHENVGYIEEVAEGVEGLE   80 (171)
T ss_dssp             CEEEESSTTSCCEEECCCCCCCBTTBCEEEEEEEEECCHHHHHHHHTTTHHHHCCCSSEECCCCEEEEEEEECTTCCSCC
T ss_pred             CEEEEEeCCCCCEEEEeeCCCCCCCCEEEEEEEecccceeeehccCCCcccccCCccccccceeeeeeeecccCCCCcCC
Confidence            7999999999999999999986 689999999999999999999988664   256799999999999999999999999


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||||++.+...|+.|..|+++++++|.+...   .|+..+|                   +||||+.++.++++++|++
T Consensus        81 ~GdrV~~~~~~~cg~~~~c~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~  138 (171)
T d1h2ba1          81 KGDPVILHPAVTDGTCLACRAGEDMHCENLEF---PGLNIDG-------------------GFAEFMRTSHRSVIKLPKD  138 (171)
T ss_dssp             TTCEEEECSCBCCSCSHHHHTTCGGGCTTCBC---BTTTBCC-------------------SSBSEEEECGGGEEECCTT
T ss_pred             CCCEEEEcCccCCCCccccccccccccccccc---ceeeccc-------------------ccceeeeehhhcceecCCC
Confidence            99999999999999999999999999988775   6666666                   9999999999999999999


Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEE
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI  207 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI  207 (388)
                      ++++.++++.+++.|||+++ +.+.+ .|++|||
T Consensus       139 ~~~e~aa~~~~~~~ta~~al-~~~~~-~G~~VlI  170 (171)
T d1h2ba1         139 VRVEVDIHKLDEINDVLERL-EKGEV-LGRAVLI  170 (171)
T ss_dssp             CCCCEEEEEGGGHHHHHHHH-HTTCC-SSEEEEE
T ss_pred             CCHHHHHHHHhHHHHHHHHH-HhcCC-CCCEEEe
Confidence            99998998888999999976 56777 8999998

>d1vj0a1 b.35.1.2 (A:2-155,A:338-367) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=5.3e-36  Score=253.10  Aligned_cols=175  Identities=23%  Similarity=0.335  Sum_probs=148.0

Q ss_pred             CCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCC--
Q 016507           13 KPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVD--   90 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~--   90 (388)
                      |+|+|||+++++++++++++++|+|+|+++||||||.++|||++|+++++|..+..++|+++|||++|+|+++|++|+  
T Consensus         1 m~~k~kA~v~~~~~~pl~i~ev~~P~~~~~evlVkv~a~gIC~sD~~~~~G~~~~~~~P~vlGHE~~G~V~~vG~~v~~~   80 (184)
T d1vj0a1           1 MGLKAHAMVLEKFNQPLVYKEFEISDIPRGSILVEILSAGVCGSDVHMFRGEDPRVPLPIILGHEGAGRVVEVNGEKRDL   80 (184)
T ss_dssp             CCEEEEEEEBCSTTSCCEEEEEEECCCCTTCEEEEEEEEEECHHHHHHHTTCCTTCCSSBCCCCEEEEEEEEESSCCBCT
T ss_pred             CCceEEEEEEecCCCCcEEEEeeCCCCCCCEEEEEEEEECCCCCchhheeccCCccccccccceeeeeeeeEEecccccc
Confidence            578999999999999999999999999999999999999999999999999887778999999999999999999986  


Q ss_pred             ---CCCCCCEEeecCCCCCCCCccccCCCCC-CCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEee-cC
Q 016507           91 ---GVVEGDVVIPHFLADCTECVGCRSKKGN-LCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLD-IA  165 (388)
Q Consensus        91 ---~~~vGd~V~~~~~~~~~~c~~c~~~~~~-~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~-~~  165 (388)
                         ++++||+|++.+..+|+.|.+|+.|++. .|.+...   .|+.+.- .++          ..-+|+|+||+.++ ..
T Consensus        81 ~~~~~~~Gd~V~~~~~~~Cg~C~~C~~g~~~~~c~~~~~---~G~~~~~-~~~----------~~~~Gg~ae~~~v~~~~  146 (184)
T d1vj0a1          81 NGELLKPGDLIVWNRGITCGECYWCKVSKEPYLCPNRKV---YGINRGC-SEY----------PHLRGCYSSHIVLDPET  146 (184)
T ss_dssp             TSCBCCTTCEEEECSEECCSSSHHHHTSCCGGGCTTCEE---TTTTCCS-SST----------TCCCSSSBSEEEECTTC
T ss_pred             ccccccceeeeEeccccccccChhHhCccccccCCCcee---eccCCCC-CCC----------CCcceeCcCcEEechhH
Confidence               4689999999999999999999999975 5887765   4443210 000          11235999999996 57


Q ss_pred             ceEEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEE
Q 016507          166 HVVKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (388)
Q Consensus       166 ~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~  208 (388)
                      +++++|+++++++      ++.+|+.++ +.+++++|++|||+
T Consensus       147 ~v~~ip~~l~~~~------pl~~A~~a~-~~~~~~~G~~VlI~  182 (184)
T d1vj0a1         147 DVLKVSEKITHRL------PLKEANKAL-ELMESREALKVILY  182 (184)
T ss_dssp             CEEEECTTCCEEE------EGGGHHHHH-HHHHHTSCSCEEEE
T ss_pred             cEEECCCCCCHHH------HHHHHHHHH-HHhCCCcCCEEEEe
Confidence            9999999998763      345677754 67899999999997

>d2jhfa1 b.35.1.2 (A:1-163,A:340-374) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=4e-35  Score=252.28  Aligned_cols=195  Identities=36%  Similarity=0.587  Sum_probs=163.3

Q ss_pred             CCCCCcceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           10 TAGKPIQCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        10 ~~~~~~~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      +..+.++|||+++.++++||+++++++|+|+++||||||.++|||++|++.++|.++. ++|.++|||++|+|+++|+++
T Consensus         2 ~~~~~~k~KAavl~~~~~~l~i~ev~~P~p~~~eVlVkV~a~giC~sDl~~~~G~~~~-~~P~i~GHE~~G~Vv~vG~~v   80 (198)
T d2jhfa1           2 TAGKVIKCKAAVLWEEKKPFSIEEVEVAPPKAHEVRIKMVATGICRSDDHVVSGTLVT-PLPVIAGHEAAGIVESIGEGV   80 (198)
T ss_dssp             CTTSCEEEEEEEBCSTTSCCEEEEEEECCCCTTEEEEEEEEEECCHHHHHHHHTSSCC-CSSBCCCCSEEEEEEEECTTC
T ss_pred             CCCCceEEEEEEEecCCCCCEEEEEECCCCCCCEEEEEEEEEecccccceeecCCccc-ccceecccceeEEEEecCccc
Confidence            3457899999999999999999999999999999999999999999999999998764 689999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEE
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVK  169 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~  169 (388)
                      +++++||||++.+...|+.|.+|..++.+.|.+.......|...++..++ ..++.+.+...+.|+|+||+++++.++++
T Consensus        81 ~~~~vGdrV~v~~~~~c~~c~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~-~~~g~~~~~~~~~G~fAEy~~v~~~~~~~  159 (198)
T d2jhfa1          81 TTVRPGDKVIPLFTPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRF-TCRGKPIHHFLGTSTFSQYTVVDEISVAK  159 (198)
T ss_dssp             CSCCTTCEEEECSSCCCSCSHHHHSTTCCCCTTCSSSSCCCSCTTSCCSE-EETTEEEBCSTTTCCSBSEEEEEGGGEEE
T ss_pred             cCcCCCCEEEEeeeecccccccccCCccceeccccccccCccccCccccc-cccCceeccCCCCCcccCeEEeCHHHeEE
Confidence            99999999999999999999999999999999988764445444443222 24566666667779999999999999999


Q ss_pred             cCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEc
Q 016507          170 VDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (388)
Q Consensus       170 lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~G  209 (388)
                      +|++++++.++...+++.+...   ....+++|++|+|+.
T Consensus       160 ~p~~~~~e~l~~~~~~~~~v~~---g~~~l~~G~~VaVi~  196 (198)
T d2jhfa1         160 IDAAFALDPLITHVLPFEKINE---GFDLLRSGESIRTIL  196 (198)
T ss_dssp             CCTTSCCGGGEEEEEEGGGHHH---HHHHHHTTCCSEEEE
T ss_pred             CCCCCCHHHHHHHHHHHHhhhh---CCceeeCCCEEEEEE
Confidence            9999988766655544443322   223478899998863

>d1pl8a1 b.35.1.2 (A:1-145,A:317-356) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-35  Score=251.85  Aligned_cols=170  Identities=24%  Similarity=0.379  Sum_probs=148.2

Q ss_pred             ceeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC---CCCCCcccccceeEEEEEecCCCCCC
Q 016507           16 QCRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF---PAVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        16 ~~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~---~~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      .|+|++++++++ ++++++|+|+|+++||||||.+++||++|++.+++...   ..++|.++|||++|+|+++|+++++|
T Consensus         7 ~~~a~V~~gp~~-l~l~evp~P~p~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~~~p~i~GhE~~G~V~~vG~~v~~~   85 (185)
T d1pl8a1           7 NNLSLVVHGPGD-LRLENYPIPEPGPNEVLLRMHSVGICGSDVHYWEYGRIGNFIVKKPMVLGHEASGTVEKVGSSVKHL   85 (185)
T ss_dssp             CCEEEEEEETTE-EEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHHSEETTEECSSCEECCCEEEEEEEEECTTCCSC
T ss_pred             CCEEEEEeCCCe-EEEEEeECCCCCCCEEEEEEEEEEeeCchhhhhccccccccCCCCCeeeeeeeeeeEEEeccceeee
Confidence            578999999987 99999999999999999999999999999999886432   24678999999999999999999999


Q ss_pred             CCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCC-CCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMP-RDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        93 ~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~-~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      ++||||++.+...|+.|.+|+.|+++.|.+..+   .|.. .+                   |+|+||+.++.++++++|
T Consensus        86 ~~GdrV~~~~~~~cg~c~~c~~G~~~~c~~~~~---~g~~~~~-------------------G~~aey~~~~~~~~~~lP  143 (185)
T d1pl8a1          86 KPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFF---CATPPDD-------------------GNLCRFYKHNAAFCYKLP  143 (185)
T ss_dssp             CTTCEEEECSEECSSCCHHHHTTCGGGCTTCEE---TTBTTBC-------------------CSCBSEEEEEGGGEEECC
T ss_pred             cccccceecceeccccchhhccchhchhcccee---eeccccc-------------------ccceEEEEEchHHEEECC
Confidence            999999999999999999999999999987765   3433 33                   499999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccch
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGS  212 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~  212 (388)
                      +++++++|++++  +.+|+.+ ++.+++.+|++||| |+|+
T Consensus       144 ~~~~~~~aa~~p--l~~a~~a-~~~~~~~~G~~VlI-g~GP  180 (185)
T d1pl8a1         144 DNVKPLVTHRFP--LEKALEA-FETFKKGLGLKIML-KCDP  180 (185)
T ss_dssp             TTCGGGEEEEEE--GGGHHHH-HHHHHTTCCSEEEE-ECCT
T ss_pred             CCCCHHHHHHHH--HHHHHHH-HHHhCCCCCCEEEE-EeCC
Confidence            999999987754  4566664 46678999999998 5554

>d1jqba1 b.35.1.2 (A:1001-1139,A:1314-1351) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=100.00  E-value=2.3e-37  Score=260.29  Aligned_cols=171  Identities=19%  Similarity=0.117  Sum_probs=144.6

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||+++.++++ ++++++|.|+|+++|||||++++|||++|++.+.+.....++|+++|||++|+|+++|+++++|++||
T Consensus         1 MKa~v~~~~~~-l~i~e~p~P~~~~~eVlIkv~a~gic~sD~~~~~~~~~~~~~P~i~GhE~~G~V~~vG~~v~~~~vGd   79 (177)
T d1jqba1           1 MKGFAMLGINK-LGWIEKERPVAGSYDAIVRPLAVSPCTSDIHTVFEGALGDRKNMILGHEAVGEVVEVGSEVKDFKPGD   79 (177)
T ss_dssp             CEEEEEEETTE-EEEEECCCCCCCTTCEEEEEEEECCCHHHHHHHHHCTTCCCSSEECCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEEeCCC-eEEEEeeCCCCCCCEEEEEEEEEecCCCcccccccCCCCCCCCccCcceeeEEeeecccccceecCCC
Confidence            89999999998 99999999999999999999999999999988877666668899999999999999999999999999


Q ss_pred             EEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec--CceEEcCCCC
Q 016507           97 VVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI--AHVVKVDPTV  174 (388)
Q Consensus        97 ~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~--~~~~~lP~~~  174 (388)
                      ||++.+..+|+.|.+|+++++++|.+......+|...+|                   +|+||+++|.  .+++++|+++
T Consensus        80 rV~v~~~~~cg~c~~C~~g~~~~c~~~~~~~~~g~~~~G-------------------~~aEy~~vp~a~~~l~~iP~~~  140 (177)
T d1jqba1          80 RVIVPCTTPDWRSLEVQAGFQQHSNGMLAGWKFSNFKDG-------------------VFGEYFHVNDADMNLAILPKDV  140 (177)
T ss_dssp             EEEECSCCCCSSSHHHHTTCGGGTTSTTTTCCBTTTBCC-------------------SSBSSEEESSHHHHCEECCTTS
T ss_pred             cEEEeeeeccccccchhhhhhcccccccccccccCCCCh-------------------hcCeeEEEEhhhCeEEECCCCc
Confidence            999999999999999999999999877643334444445                   9999999985  4799999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHH
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVA  218 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai  218 (388)
                      ++++++.....   ++..+        ++.+||.|+|++|+.++
T Consensus       141 ~~~~~~~~~~~---~~~~~--------~~~vlv~g~gp~gl~aa  173 (177)
T d1jqba1         141 DLSKLVTHVYH---GFDHI--------EEALLLMKDKPKDLIKA  173 (177)
T ss_dssp             CGGGGEEEEEE---SGGGH--------HHHHHHHHHCCTTCSEE
T ss_pred             chHHHHHHHHH---HHHHh--------cCceEEECCCHHHhhee
Confidence            99887654433   22222        23477888888887543

>d1piwa1 b.35.1.2 (A:1-152,A:321-360) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-34  Score=245.91  Aligned_cols=180  Identities=19%  Similarity=0.268  Sum_probs=150.7

Q ss_pred             CCcceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC-
Q 016507           13 KPIQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV-   89 (388)
Q Consensus        13 ~~~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v-   89 (388)
                      .|.+|||+++..+++.  +++.+++.++++++||||||.|+|||++|++++.|.++..++|+++|||++|+|+++|+++ 
T Consensus         3 ~P~~~ka~~~~~~~~~~~~~~~~~~p~p~~~~eVlVkv~a~giC~sDl~~~~g~~~~~~~P~i~GHE~~G~Vv~vG~~v~   82 (192)
T d1piwa1           3 YPEKFEGIAIQSHEDWKNPKKTKYDPKPFYDHDIDIKIEACGVCGSDIHCAAGHWGNMKMPLVVGHEIVGKVVKLGPKSN   82 (192)
T ss_dssp             TTTCEEEEEECCSSSTTSCEEEEECCCCCCTTEEEEEEEEEEECHHHHHHHTTTTSCCCSSEECCCCEEEEEEEECTTCC
T ss_pred             CCceeEEEEEeCCCcCCcceEeeccCCCCCCCeEEEEEeeeCCCcchHHHHcCCCCCCCCCcCcccccccchhhcccccc
Confidence            4678999999888754  6777777677899999999999999999999999988778899999999999999999998 


Q ss_pred             CCCCCCCEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           90 DGVVEGDVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        90 ~~~~vGd~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      +.+++||||++.+. ..|+.|.+|+.++.++|.+...... +...+|              ...+|+||||+++++++++
T Consensus        83 ~~~k~GdrV~~~~~~~~c~~c~~c~~g~~~~C~~~~~~~~-~~~~~G--------------~~~~Ggfaey~~v~~~~~~  147 (192)
T d1piwa1          83 SGLKVGQRVGVGAQVFSCLECDRCKNDNEPYCTKFVTTYS-QPYEDG--------------YVSQGGYANYVRVHEHFVV  147 (192)
T ss_dssp             SSCCTTCEEEECSEEECCSCSHHHHTTCGGGCTTCEESSS-CBCTTS--------------CBCCCSSBSEEEEEGGGEE
T ss_pred             cccCCCCeeeEeeeccCCCCchhhhcCCcccccccccccc-cccccc--------------cccccceeeEEEeehHHeE
Confidence            56999999987664 5799999999999999988765311 111112              2223599999999999999


Q ss_pred             EcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEE
Q 016507          169 KVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (388)
Q Consensus       169 ~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~  208 (388)
                      ++|++++++.|+.+.+.+.|||+++ +.++++++++|||.
T Consensus       148 ~iP~~l~~e~Aal~~~~~~ta~~~l-~~~~vk~g~~Vvv~  186 (192)
T d1piwa1         148 PIPENIWVETLPVGEAGVHEAFERM-EKGDVRYRFTLVGY  186 (192)
T ss_dssp             ECCTTCCEEEEESSHHHHHHHHHHH-HHTCCSSEEEEECC
T ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEE
Confidence            9999999988877765678999865 67899999999874

>d1jvba1 b.35.1.2 (A:1-143,A:314-347) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=6.9e-34  Score=240.38  Aligned_cols=167  Identities=25%  Similarity=0.398  Sum_probs=143.8

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCC--------CCCCCcccccceeEEEEEecCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDF--------PAVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~--------~~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      |||++++++|+||+++++|+|+|+++||||||.++|||++|+++++|.++        ..++|+++|||++|+|+++|++
T Consensus         1 MKA~~~~~~G~pl~i~dv~~P~p~~~eVlVkv~a~gic~~D~~~~~G~~~~~~~~~~~~~~~P~v~GhE~~G~V~~~g~~   80 (177)
T d1jvba1           1 MRAVRLVEIGKPLSLQEIGVPKPKGPQVLIKVEAAGVCHSDVHMRQGRFGNLRIVEDLGVKLPVTLGHEIAGKIEEVGDE   80 (177)
T ss_dssp             CEEEEECSTTSCCEEEECCCCCCCTTCEEEEEEEEEECTHHHHHTTTEETTEETTTTTCCCSCEECCCEEEEEEEEECTT
T ss_pred             CeEEEEEeCCCCCEEEEeeCCCCCCCEEEEEEEEEecccceeeeecCcccccccccccccCCCccccceEEEEEeeeccC
Confidence            89999999999999999999999999999999999999999999998653        2468999999999999999999


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCc-e
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAH-V  167 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~-~  167 (388)
                      +++|++||||++.+...|+.|..|+.++++.|++...   +|+..+|                   +||||+.++..+ +
T Consensus        81 v~~~~~GdrV~~~~~~~c~~c~~~~~g~~~~c~~~~~---~g~~~~G-------------------~~aey~~vp~~~~~  138 (177)
T d1jvba1          81 VVGYSKGDLVAVNPWQGEGNCYYCRIGEEHLCDSPRW---LGINFDG-------------------AYAEYVIVPHYKYM  138 (177)
T ss_dssp             CCSCCTTCEEEECCEECCSSSHHHHTTCGGGCSSCEE---BTTTBCC-------------------SSBSEEEESCGGGE
T ss_pred             ccccccCceEeeeeccccccccccccccccccCCcce---eeecccc-------------------ccccEEEEEhHHeE
Confidence            9999999999999999999999999999999998775   6766667                   999999997655 5


Q ss_pred             EEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEE
Q 016507          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVI  207 (388)
Q Consensus       168 ~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI  207 (388)
                      +++|+..+.+.|+....++.+|++++ ..+++ .|++|||
T Consensus       139 ~~~~~~~~~~~a~~~~~~~~~a~~~~-~~~~~-~G~~VlI  176 (177)
T d1jvba1         139 YKLRRVKPMITKTMKLEEANEAIDNL-ENFKA-IGRQVLI  176 (177)
T ss_dssp             EECSSSCCCCEEEEEGGGHHHHHHHH-HTTCC-CSEEEEE
T ss_pred             EECCCCChHHHHHHHHHHHHHHHHHH-Hhhcc-cCCceEC
Confidence            66666555544544455788888865 55565 5899987

>d1kola1 b.35.1.2 (A:2-160,A:356-397) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=1.5e-36  Score=260.59  Aligned_cols=191  Identities=19%  Similarity=0.236  Sum_probs=155.2

Q ss_pred             eeeeeecCCCCCeEEEEeecCCC-------CCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPP-------NSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENV   89 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~-------~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v   89 (388)
                      +||++++++++ ++++++|.|++       +++||||||.+++||++|+++++|.++ .++|.++|||++|+|+++|++|
T Consensus         2 ~kA~v~~~~~~-le~~e~~~P~~~~p~~~p~~~eVlVkv~a~giC~sDl~~~~G~~~-~~~P~v~GHE~~G~Vv~vG~~V   79 (201)
T d1kola1           2 NRGVVYLGSGK-VEVQKIDYPKMQDPRGKKIEHGVILKVVSTNICGSDQHMVRGRTT-AQVGLVLGHEITGEVIEKGRDV   79 (201)
T ss_dssp             EEEEEEEETTE-EEEEEECCCCSBCTTSCBCSSCEEEEEEEEECCHHHHHHHTTCSC-CCTTCBCCCCEEEEEEEECTTC
T ss_pred             cEEEEEeCCCc-eEEEEecCCcccCCCCCCCCCEEEEEEEEEEEcchhhhhhcCCcc-cccceeccceeeeeeecccccc
Confidence            69999999997 99999999865       469999999999999999999999876 4789999999999999999999


Q ss_pred             CCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeec--Cce
Q 016507           90 DGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDI--AHV  167 (388)
Q Consensus        90 ~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~--~~~  167 (388)
                      ++|++||||++.+..+|+.|.+|++++++.|.+.......+.....  ..          ....|+|+||+++|.  .++
T Consensus        80 ~~~~vGdrV~v~~~~~Cg~C~~C~~g~~~~~~~~~~~~~~~~~g~~--~~----------~~~~Gg~aeyv~vp~~~~~l  147 (201)
T d1kola1          80 ENLQIGDLVSVPFNVACGRCRSCKEMHTGVCLTVNPARAGGAYGYV--DM----------GDWTGGQAEYVLVPYADFNL  147 (201)
T ss_dssp             CSCCTTCEEECCSEECCSSSHHHHTTCGGGCSSSCSSSSCEEBTCT--TS----------CCBCCCSBSEEEESSHHHHC
T ss_pred             ccccccceeEEeeeeeccCChhhhCCCccccccccccccccccccc--CC----------CccccccccEEEeehHHCeE
Confidence            9999999999999999999999999999999876643222211000  00          112369999999974  379


Q ss_pred             EEcCCCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCC
Q 016507          168 VKVDPTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA  226 (388)
Q Consensus       168 ~~lP~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~  226 (388)
                      ++||++.++.+++++...+.+++.++ ..+....++    +|+|++|++++|+||++|+
T Consensus       148 ~~iPd~~~~~~~~~~~~~~~~~~~a~-~~~~~~~g~----~g~G~vG~~~i~~ak~~GA  201 (201)
T d1kola1         148 LKLPDRDKAMEKINIAEVVGVQVISL-DDAPRGYGE----FDAGVPKKFVIDPHKTFSA  201 (201)
T ss_dssp             EECSCHHHHHHTCCHHHHHTEEEECG-GGHHHHHHH----HHHTCSCEEEECTTCSSCC
T ss_pred             EECCCCCChHHHHHHHHHHHHHHHHH-HhCCCCCeE----EeeCHHHHHHHHHHHHcCC
Confidence            99999877777777776777777753 334444443    4889999999999999885

>d1rjwa1 b.35.1.2 (A:1-137,A:306-339) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=1.1e-33  Score=238.04  Aligned_cols=168  Identities=27%  Similarity=0.348  Sum_probs=145.2

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCC-CCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKD-FPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~-~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||++++++++|++++++|.|+|++|||||||++++||++|++.+++.. ....+|.++|||++|+|+++|++++++++|
T Consensus         1 MkA~v~~~~g~pl~i~~v~~P~~~~~eVlVkv~a~gic~sD~~~~~~~~~~~~~~p~v~GhE~~G~Vv~vG~~v~~~~vG   80 (171)
T d1rjwa1           1 MKAAVVEQFKEPLKIKEVEKPTISYGEVLVRIKACGVCHTDLHAAHGDWPVKPKLPLIPGHEGVGIVEEVGPGVTHLKVG   80 (171)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             CeEEEEecCCCCcEEEEeECCCCCCCeEEEEEEEeeccccceeeeecccccccccccccCCEEEEEEEEecccccCceee
Confidence            8999999999999999999999999999999999999999999887654 346789999999999999999999999999


Q ss_pred             CEEeecCC-CCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCC
Q 016507           96 DVVIPHFL-ADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTV  174 (388)
Q Consensus        96 d~V~~~~~-~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~  174 (388)
                      |||++.+. ..|+.|..|..+..+.|.+...   .|...+|                   +|+||+++++++++++|+++
T Consensus        81 drV~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~G-------------------~~aey~~v~~~~~~~iP~~~  138 (171)
T d1rjwa1          81 DRVGIPWLYSACGHCDYCLSGQETLCEHQKN---AGYSVDG-------------------GYAEYCRAAADYVVKIPDNT  138 (171)
T ss_dssp             CEEEECSEEECCSCSHHHHTTCGGGCTTCEE---BTTTBCC-------------------SSBSEEEEEGGGCEECCTTC
T ss_pred             eEEeeccccccccccccccCCCccccccccc---cceeccC-------------------ccccceEecHHHEEECCCCC
Confidence            99988765 4588999999999999988775   6666666                   99999999999999999999


Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL  210 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga  210 (388)
                      +++.|+ +. ...++++.+. .+.+ +|++|||+|.
T Consensus       139 ~~e~A~-l~-~~~~~~~~~~-~~~~-~G~tVlViG~  170 (171)
T d1rjwa1         139 IIEVQP-LE-KINEVFDRML-KGQI-NGRVVLTLED  170 (171)
T ss_dssp             CEEEEE-GG-GHHHHHHHHH-TTCC-SSEEEEECCC
T ss_pred             CHHHHH-HH-HHHHHHHHHH-hcCC-CCCEEEEeCC
Confidence            987665 44 4566776553 3445 5999999984

>d1uufa1 b.35.1.2 (A:3-144,A:313-349) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.3e-33  Score=235.34  Aligned_cols=160  Identities=21%  Similarity=0.316  Sum_probs=132.4

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEGD   96 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vGd   96 (388)
                      |||++.+++++||+++++|.|+|++|||||||.++|||++|++.+.|..+...+|+++|||++|+|+++|++|++|++||
T Consensus         1 m~a~~~~~~~~pl~i~ev~~P~pg~geVlVkv~a~gic~sDl~~~~g~~~~~~~P~i~GhE~~G~V~~vG~~V~~~~vGd   80 (179)
T d1uufa1           1 IKAVGAYSAKQPLEPMDITRREPGPNDVKIEIAYCGVCHSDLHQVRSEWAGTVYPCVPGHEIVGRVVAVGDQVEKYAPGD   80 (179)
T ss_dssp             CEEEEBSSTTSCCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHCTTSCCCSSBCCCCCEEEEEEEECTTCCSCCTTC
T ss_pred             CeEEEEccCCCCCEEEEecCCCCCCCEEEEEEEEECCCCCcceeeeeeeccccccccccccccccchhhccccccCCCCC
Confidence            79999999999999999999999999999999999999999999999887778999999999999999999999999999


Q ss_pred             EEeecC-CCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           97 VVIPHF-LADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        97 ~V~~~~-~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      +|.+.+ ...|+.|.+|+.+++++|.+..... .+.....             .....|+|+||+.+++++++++|+...
T Consensus        81 rV~v~~~~~~cg~C~~C~~g~~~~C~~~~~~~-~~~~~~~-------------~~~~~GgfaEy~~v~~~~~~~ip~~~~  146 (179)
T d1uufa1          81 LVGVGCIVDSCKHCEECEDGLENYCDHMTGTY-NSPTPDE-------------PGHTLGGYSQQIVVHERYVLRIRVADI  146 (179)
T ss_dssp             EEEECSEEECCSSSHHHHTTCGGGCTTCEETT-TSBCSST-------------TSBCCCSSBSEEEEEGGGCEECCCCCE
T ss_pred             EEEEcccccccCccccccCcccccCCCccccc-cccCCCC-------------CcccccccceEEEechHHEEECCCCCc
Confidence            998766 4689999999999999998865421 1111111             012236999999999999999996643


Q ss_pred             ccccccccchhhhhHHHH
Q 016507          176 PNRACLLSCGVSTGVGAA  193 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l  193 (388)
                      ...  .. .++.++++++
T Consensus       147 ~~~--~a-~~l~~a~~a~  161 (179)
T d1uufa1         147 EMI--RA-DQINEAYERM  161 (179)
T ss_dssp             EEE--CG-GGHHHHHHHH
T ss_pred             Chh--Hh-chhHHHHHHH
Confidence            322  22 2556777765

>d1yb5a1 b.35.1.2 (A:6-120,A:295-329) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-30  Score=212.78  Aligned_cols=144  Identities=18%  Similarity=0.274  Sum_probs=129.9

Q ss_pred             eeeeeecCCCCC--eEEE-EeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCC
Q 016507           17 CRAAIATAPGEP--LVID-EVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGV   92 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~-~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~   92 (388)
                      |||+++++++.|  +++. ++|.|+|++|||||||.|++||++|++.++|.++. ..+|.++|||++|+|+++|+++++|
T Consensus         3 MkAv~~~~~G~p~~l~~~~~~~~P~~~~~eVlVkv~a~~i~~~D~~~~~g~~~~~~~~p~i~G~e~~G~V~~vG~~v~~~   82 (150)
T d1yb5a1           3 MRAVRVFEFGGPEVLKLRSDIAVPIPKDHQVLIKVHACGVNPVETYIRSGTYSRKPLLPYTPGSDVAGVIEAVGDNASAF   82 (150)
T ss_dssp             EEEEEESSCSSGGGEEEEEEEECCCCCTTEEEEEEEEEECCHHHHHHHHTCSSCCCCSSBCCCSCEEEEEEEECTTCTTC
T ss_pred             eeEEEEEccCCcceEEEEeecCCCCCCCCeEEEEEEEecCcccchhhhcCCcCccccccccCccceeeeeEeecceeecc
Confidence            899999988876  7775 68999999999999999999999999999987755 4678999999999999999999999


Q ss_pred             CCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCC
Q 016507           93 VEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDP  172 (388)
Q Consensus        93 ~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~  172 (388)
                      ++||||+..+.                             .                   .|+|+||+.++.++++++|+
T Consensus        83 ~vGdrV~~~~~-----------------------------~-------------------~G~~ae~~~v~~~~~~~iP~  114 (150)
T d1yb5a1          83 KKGDRVFTSST-----------------------------I-------------------SGGYAEYALAADHTVYKLPE  114 (150)
T ss_dssp             CTTCEEEESCC-----------------------------S-------------------SCSSBSEEEEEGGGEEECCT
T ss_pred             ccCcccccccc-----------------------------c-------------------cccccccccccccccccccC
Confidence            99999975321                             1                   24999999999999999999


Q ss_pred             CCCccccccccchhhhhHHHHHHhcCCCCCCEEEEE
Q 016507          173 TVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (388)
Q Consensus       173 ~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~  208 (388)
                      ++++++||++++...|+++++...+....|+++||+
T Consensus       115 ~ls~~~Aa~~~~~~~ta~~~~~~~g~~~~G~~vliL  150 (150)
T d1yb5a1         115 KLKPVIGSQYPLEKVAEAHENIIHGSGATGKMILLL  150 (150)
T ss_dssp             TCCCCEEEEEEGGGHHHHHHHHHHSSCCSSEEEEEC
T ss_pred             CCCHHHHHHhhhhhhhehhhheEEcCcccCCEEEEC
Confidence            999999999999999999998888899999999984

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.96  E-value=2.8e-29  Score=211.19  Aligned_cols=174  Identities=31%  Similarity=0.557  Sum_probs=160.4

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      ++++.|+.++|.+.|||+++++.+++++|++|||+|+|++|++++|+++.+|+++|++++++++|+++++++|+++++|+
T Consensus         1 vP~e~aapl~ca~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~   80 (174)
T d1f8fa2           1 VPIELLGPLGCGIQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINS   80 (174)
T ss_dssp             SCGGGTGGGGTHHHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEET
T ss_pred             CCHHHHHHHhhHHHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeC
Confidence            35788999999999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      ++   +++.+.+++++++++|+||||+|+...++.+++.++++ |+++.+|........+++...++.+++++.|++.+.
T Consensus        81 ~~---~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~-G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~  156 (174)
T d1f8fa2          81 KT---QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGIL-GKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGS  156 (174)
T ss_dssp             TT---SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEE-EEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGG
T ss_pred             CC---cCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCc-eEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecC
Confidence            88   88999999999889999999999998899999999997 999999976556677899999999999999998877


Q ss_pred             CCccCcHHHHHHHHhCCC
Q 016507          334 LKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~  351 (388)
                      +..+++++++++++++|+
T Consensus       157 ~~~~~~~~~~~~l~~~Gk  174 (174)
T d1f8fa2         157 GSPKKFIPELVRLYQQGK  174 (174)
T ss_dssp             SCHHHHHHHHHHHHHTTS
T ss_pred             CChHHHHHHHHHHHHcCC
Confidence            766778999999999984

>d1qora1 b.35.1.2 (A:2-112,A:292-327) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.1e-28  Score=201.44  Aligned_cols=141  Identities=19%  Similarity=0.215  Sum_probs=122.5

Q ss_pred             eeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           18 RAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        18 ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      +.+.|+++|.|  |++++++.|+|+++||||||.|++||++|+++++|.++...+|.++|||++|+|+++|+++++|++|
T Consensus         2 ~~i~~~~~G~pe~l~~~e~~~P~p~~~eVlVkv~a~~in~~D~~~~~G~~~~~~~p~~~G~e~~G~V~~vG~~v~~~~vG   81 (147)
T d1qora1           2 TRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFIDTYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAG   81 (147)
T ss_dssp             EEEEBSSCCSGGGCEEEECCCCCCCTTEEEEEEEEEECCHHHHHHHHTSSCCSSSSBCCCSCEEEEEEEECTTCCSCCTT
T ss_pred             eEEEEcccCCCceeEEEEecCCCCCCCEEEEEEEEecccceeeeeecCCCCCCcceeeeccccccceeeeeeeccccccc
Confidence            46788999887  9999999999999999999999999999999999998888899999999999999999999999999


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |||+..                             ...                   .|+|+||+.++.+.++++|++++
T Consensus        82 drV~~~-----------------------------~~~-------------------~G~~ae~~~v~~~~~~~~P~~~~  113 (147)
T d1qora1          82 DRVVYA-----------------------------QSA-------------------LGAYSSVHNIIADKAAILPAAIK  113 (147)
T ss_dssp             CEEEES-----------------------------CCS-------------------SCCSBSEEEEEGGGEEECCTTSC
T ss_pred             ceeeee-----------------------------ccc-------------------cccceeEEEEehHHeEEcCcccc
Confidence            999631                             111                   24999999999999999999998


Q ss_pred             cccc--ccccchhhhhHHHHHHhcCCCCCCEEEE
Q 016507          176 PNRA--CLLSCGVSTGVGAAWRTANVEVGSTVVI  207 (388)
Q Consensus       176 ~~~a--a~~~~~~~ta~~~l~~~~~~~~~~~VlI  207 (388)
                      +++|  +++++...++++++++ .++++|++|||
T Consensus       114 ~~~a~a~~~~~~~~~~~~~l~~-~~~~~G~~VLI  146 (147)
T d1qora1         114 VDVAEQQKYPLKDAQRAHEILE-SRATQGSSLLI  146 (147)
T ss_dssp             CCCCGGGEEEGGGHHHHHHHHH-TTCCCBCCEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-hCCCCCCEEEe
Confidence            8755  4456666777776654 67999999998

>d1xa0a1 b.35.1.2 (A:1-118,A:295-328) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.95  E-value=1.3e-28  Score=202.15  Aligned_cols=148  Identities=20%  Similarity=0.131  Sum_probs=125.3

Q ss_pred             cceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCC
Q 016507           15 IQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        15 ~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      .+|||+++.+++++  ++++++|+|+|++|||||||.|+|||++|++.+.|.++. ..+|.++|||++|+|++  .+++.
T Consensus         2 ~~~KA~v~~~~~~~~~~~i~~v~~P~~~~~eVlVkV~a~gin~~D~~~~~g~~~~~~~~p~v~g~e~~G~v~~--~~~~~   79 (152)
T d1xa0a1           2 SAFQAFVVNKTETEFTAGVQTISMDDLPEGDVLVRVHYSSVNYKDGLASIPDGKIVKTYPFVPGIDLAGVVVS--SQHPR   79 (152)
T ss_dssp             CEEEEEEEEEETTEEEEEEEEEEGGGSCSCSEEEEEEEEECCHHHHHHTSGGGSSCCSSSBCCCSEEEEEEEE--CCSSS
T ss_pred             CceEEEEEEecCCceEEEEEEccCCCCCCCEEEEEEEEeCCChHHHHHHhhcccccccccceeeeeeeeeeec--cCCCc
Confidence            56999999999876  557899999999999999999999999999998887654 56799999999999999  55678


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      |++||+|+....                        ..+..++                   |+||||+.++.++++++|
T Consensus        80 ~~~g~~v~~~~~------------------------~~~~~~~-------------------G~~aEy~~v~~~~~~~iP  116 (152)
T d1xa0a1          80 FREGDEVIATGY------------------------EIGVTHF-------------------GGYSEYARLHGEWLVPLP  116 (152)
T ss_dssp             CCTTCEEEEEST------------------------TBTTTBC-------------------CSSBSEEEECGGGCEECC
T ss_pred             cccCCEEEEecC------------------------ccccccC-------------------CCcceeeeehhhccccCC
Confidence            999999974321                        0222233                   499999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEc
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFG  209 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~G  209 (388)
                      ++++. +||+++++.+||+.++....+++ |++|||+|
T Consensus       117 ~~l~~-~aa~l~~a~~ta~~~~~~~~~~~-G~tVL~l~  152 (152)
T d1xa0a1         117 KGLER-IAQEISLAELPQALKRILRGELR-GRTVVRLA  152 (152)
T ss_dssp             TTHHH-HEEEEEGGGHHHHHHHHHHTCCC-SEEEEECC
T ss_pred             CCCCH-HHHHHHHHHHHHHHHHHHhcCCC-CCEEEEcC
Confidence            99984 78889989999988888888876 99999975

>d1iz0a1 b.35.1.2 (A:1-98,A:270-302) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.95  E-value=1.3e-28  Score=196.00  Aligned_cols=130  Identities=18%  Similarity=0.183  Sum_probs=116.4

Q ss_pred             eeeeeecCCCCCeEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCCCC
Q 016507           17 CRAAIATAPGEPLVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVVEG   95 (388)
Q Consensus        17 ~ka~~~~~~~~~~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~vG   95 (388)
                      |||++++++++++++++++.|+|+++|||||+.|+|||++|++.++|.++. ..+|+++|||++|+|           +|
T Consensus         1 MkA~~~~~~G~~l~~~e~~~p~p~~~eVlVkv~a~gin~~D~~~~~G~~~~~~~~P~v~G~E~~G~V-----------vG   69 (131)
T d1iz0a1           1 MKAWVLKRLGGPLELVDLPEPEAEEGEVVLRVEAVGLNFADHLMRLGAYLTRLHPPFIPGMEVVGVV-----------EG   69 (131)
T ss_dssp             CEEEEECSTTSCEEEEECCCCCCCTTEEEEEEEEEEECHHHHHHHHTCSSSCCCSSBCCCCEEEEEE-----------TT
T ss_pred             CcEEEEccCCCCCEEEEccCCCCCCCEEEEEEEEEeccccccccccccccccccceeEeeeeeEEee-----------cc
Confidence            899999999999999999999999999999999999999999999998755 568999999999999           39


Q ss_pred             CEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCCCC
Q 016507           96 DVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPTVP  175 (388)
Q Consensus        96 d~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~~~  175 (388)
                      |+|+..                              ..+                   |+|+||+.+++++++++|++++
T Consensus        70 d~V~~~------------------------------~~~-------------------G~~aey~~v~~~~~~~~P~~~~  100 (131)
T d1iz0a1          70 RRYAAL------------------------------VPQ-------------------GGLAERVAVPKGALLPLPEGRP  100 (131)
T ss_dssp             EEEEEE------------------------------CSS-------------------CCSBSEEEEEGGGCEECCTTCC
T ss_pred             ceEEEE------------------------------ecc-------------------CccceeeeeCHHHeEEccCCCC
Confidence            999632                              122                   4999999999999999999999


Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEE
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF  208 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~  208 (388)
                      +++||++++++.|||+++++.+  ..|++||++
T Consensus       101 ~~~aa~~~~~~~Ta~~al~~~g--~~g~tvl~l  131 (131)
T d1iz0a1         101 VVGPVFPFAEAEAAFRALLDRG--HTGKVVVRL  131 (131)
T ss_dssp             CEEEEEEGGGHHHHHHHTTCTT--CCBEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcc--cCCCEEEEC
Confidence            9999999999999999886654  559999873

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-27  Score=200.87  Aligned_cols=167  Identities=19%  Similarity=0.277  Sum_probs=148.7

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +|+++||+++++++|||+++++.+++++|++|||+|+ |++|++++|+|+.+|+ +|+++++++++.++++++|+++++|
T Consensus         1 ls~~~AA~l~~~~~TA~~al~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~~Ga~~vi~   79 (174)
T d1yb5a2           1 LDFKQGAAIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGAHEVFN   79 (174)
T ss_dssp             SCHHHHTTTHHHHHHHHHHHHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHhHHHHHHHHHHHHHHhCCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccccCcccccc
Confidence            5789999999999999999988899999999999996 9999999999999999 8999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      +++   +++.+.+++.+++ ++|+||||+|+.. ++.++++++++ |+++.+|..   ...++++..++.+++++.|+++
T Consensus        80 ~~~---~~~~~~i~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~-G~iv~~G~~---~~~~~~~~~~~~k~~~i~g~~~  151 (174)
T d1yb5a2          80 HRE---VNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHG-GRVIVVGSR---GTIEINPRDTMAKESSIIGVTL  151 (174)
T ss_dssp             TTS---TTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEE-EEEEECCCC---SCEEECTHHHHTTTCEEEECCG
T ss_pred             ccc---ccHHHHhhhhhccCCceEEeecccHHH-HHHHHhccCCC-CEEEEEecC---CCCCCCHHHHHHCCCEEEEEEe
Confidence            988   8899999999988 8999999999765 99999999997 999999863   3467888888999999999976


Q ss_pred             cCCCccCcHHHHHHHHhCC
Q 016507          332 GGLKAKSDIPILLKRYMDK  350 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~  350 (388)
                      .... .+++++++++++++
T Consensus       152 ~~~~-~~~~~~~~~~l~~g  169 (174)
T d1yb5a2         152 FSST-KEEFQQYAAALQAG  169 (174)
T ss_dssp             GGCC-HHHHHHHHHHHHHH
T ss_pred             cCCC-HHHHHHHHHHHHHH
Confidence            5432 45677888777654

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.95  E-value=1.3e-26  Score=194.49  Aligned_cols=173  Identities=40%  Similarity=0.742  Sum_probs=146.2

Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      +.+||++.|++.|||+++++.+++++|++|||+|+|++|++++|+++++|+++|++++++++|+++++++|+++++|+++
T Consensus         2 P~eaa~lgCa~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~   81 (174)
T d1p0fa2           2 PLESCLIGCGFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKD   81 (174)
T ss_dssp             CGGGGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGG
T ss_pred             HHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCC
Confidence            56799999999999999888899999999999999999999999999999989999999999999999999999999766


Q ss_pred             CCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCC
Q 016507          256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLK  335 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  335 (388)
                      . +....+..+..+++++|++||++|....+..++..+.++.|+++.+|.......++++...++ +++++.|++++++.
T Consensus        82 ~-d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~~~  159 (174)
T d1p0fa2          82 Y-DKPIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLL-TGRSLKGSVFGGFK  159 (174)
T ss_dssp             C-SSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHH-TTCEEEECSGGGCC
T ss_pred             c-hhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHh-CCCEEEEEEeCCCC
Confidence            1 122444445555559999999999998888999888763389999998666666777755544 58899999887764


Q ss_pred             ccCcHHHHHHHHhCCC
Q 016507          336 AKSDIPILLKRYMDKE  351 (388)
Q Consensus       336 ~~~~~~~~~~~~~~~~  351 (388)
                       .++++++++++++|+
T Consensus       160 -~~d~~~lidl~~~gK  174 (174)
T d1p0fa2         160 -GEEVSRLVDDYMKKK  174 (174)
T ss_dssp             -GGGHHHHHHHHHTTS
T ss_pred             -HHHHHHHHHHHHcCC
Confidence             458999999999884

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.94  E-value=1.3e-26  Score=195.42  Aligned_cols=175  Identities=41%  Similarity=0.743  Sum_probs=146.6

Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      |+++||.+.|++.|||+++.+.+++++|++|||+|+|++|++++|+++.+|+.+|++++++++|+++++++|+++++|+.
T Consensus         2 P~e~aa~l~ca~~Tay~al~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~   81 (176)
T d2fzwa2           2 PLDKVCLLGCGISTGYGAAVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCC
Confidence            56889999999999999988889999999999999999999999999999988999999999999999999999999886


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                      + ......+.+++.+++++|+|||++|....++.++.+++++ |+++.++..........+....+.+++++.|+.++++
T Consensus        82 ~-~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g-~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~  159 (176)
T d2fzwa2          82 D-FSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKG-WGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGW  159 (176)
T ss_dssp             G-CSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGC
T ss_pred             c-hhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCC-ceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCC
Confidence            5 1234555566665559999999999999888999999987 8888776544433333333444556899999988877


Q ss_pred             CccCcHHHHHHHHhCCC
Q 016507          335 KAKSDIPILLKRYMDKE  351 (388)
Q Consensus       335 ~~~~~~~~~~~~~~~~~  351 (388)
                      ...+++.++++++++|+
T Consensus       160 ~~~~d~~~li~l~~~GK  176 (176)
T d2fzwa2         160 KSVESVPKLVSEYMSKK  176 (176)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence            76778999999999885

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.94  E-value=1.7e-26  Score=193.49  Aligned_cols=173  Identities=38%  Similarity=0.784  Sum_probs=147.3

Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      +++.||.+.|.+.|+|+++.+.+++++|++|||+|+|++|++++|+++.+|+++|++++.+++|+++++++|+++++++.
T Consensus         2 ~Le~aa~l~Ca~~T~~~a~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~   81 (174)
T d1e3ia2           2 NLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPR   81 (174)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHHHhhhHHHHHHHHHHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCc
Confidence            46789999999999999988899999999999999999999999999999998999999999999999999999999875


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                      +. +.......+...++++|+||||+|.+..++.++++++++.|+++.+|...  ...+++...++. ++++.|++.+++
T Consensus        82 ~~-~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~--~~~~i~~~~~~~-~k~i~Gs~~Gs~  157 (174)
T d1e3ia2          82 EL-DKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKV--DEMTIPTVDVIL-GRSINGTFFGGW  157 (174)
T ss_dssp             GC-SSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSS--SEEEEEHHHHHT-TCEEEECSGGGC
T ss_pred             cc-hhhhhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCC--CccccchHHHhc-cCEEEEEEeeCC
Confidence            41 12334444444444999999999999989999999998338999999743  456777776655 679999988887


Q ss_pred             CccCcHHHHHHHHhCCC
Q 016507          335 KAKSDIPILLKRYMDKE  351 (388)
Q Consensus       335 ~~~~~~~~~~~~~~~~~  351 (388)
                      ...++++++++++++|+
T Consensus       158 ~~~~d~p~li~l~~~GK  174 (174)
T d1e3ia2         158 KSVDSVPNLVSDYKNKK  174 (174)
T ss_dssp             CHHHHHHHHHHHHHTTS
T ss_pred             ChHHHHHHHHHHHHCcC
Confidence            77788999999999885

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.94  E-value=4.4e-27  Score=197.25  Aligned_cols=171  Identities=28%  Similarity=0.421  Sum_probs=147.8

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +|+++|+.+++.++|||+++ +.+++++|++|||+|+|++|++++|+||.+|+.+|++++++++|+++++++|+++++|+
T Consensus         1 ip~e~A~~l~~~~~ta~~a~-~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~   79 (174)
T d1jqba2           1 MPLENAVMITDMMTTGFHGA-ELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNY   79 (174)
T ss_dssp             SCHHHHHTTTTHHHHHHHHH-HHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECG
T ss_pred             CCHHHHHHhhhHHHHHHHHH-HHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccc
Confidence            57899999999999999975 77999999999999999999999999999999889999999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH--HHhcCcEEEEee
Q 016507          254 KNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE--VLHSGKILMGSL  330 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~--~~~~~~~i~g~~  330 (388)
                      ++   +++.+.+++++++ ++|+||||+|++..++.++++++++ |+++.+|.+.....+.++...  ...+++++.++.
T Consensus        80 ~~---~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~  155 (174)
T d1jqba2          80 KN---GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPG-GIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGL  155 (174)
T ss_dssp             GG---SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBC
T ss_pred             cc---hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcC-CEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEec
Confidence            88   7889999999998 8999999999988799999999997 999999986655555544332  345678998886


Q ss_pred             ecCCCccCcHHHHHHHHhCCC
Q 016507          331 FGGLKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~  351 (388)
                      ....  +..+++++++++.|+
T Consensus       156 ~~~~--r~~~e~l~~li~~gk  174 (174)
T d1jqba2         156 CPGG--RLRAERLRDMVVYNR  174 (174)
T ss_dssp             CCCH--HHHHHHHHHHHHTTS
T ss_pred             CCCC--cccHHHHHHHHHcCC
Confidence            5443  345778888888874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.94  E-value=9.6e-27  Score=197.19  Aligned_cols=171  Identities=23%  Similarity=0.307  Sum_probs=148.1

Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      +..+|.+.|+++|||+++.+..++++|++|||+|+|++|++++|+|+++|+.+|++++++++|+++++++|+++++|+++
T Consensus         3 ~~~~a~~~c~~~ta~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~   82 (182)
T d1vj0a2           3 LDVLAMAMCSGATAYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRE   82 (182)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTT
T ss_pred             HHHHHHhhcHHHHHHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccc
Confidence            45678899999999999888889999999999999999999999999999878999999999999999999999999987


Q ss_pred             CCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH-HHhcCcEEEEeeecC
Q 016507          256 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE-VLHSGKILMGSLFGG  333 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~~~i~g~~~~~  333 (388)
                      .+..+..+.+.+.+++ ++|+||||+|++..++.++++++++ |+++.+|......+++++... ++.|++++.|++...
T Consensus        83 ~~~~~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~-G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~  161 (182)
T d1vj0a2          83 TSVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRG-GFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSD  161 (182)
T ss_dssp             SCHHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEE-EEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCC
T ss_pred             cchHHHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCC-CEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCC
Confidence            3333455667888888 8999999999988799999999997 999999976666677777654 567899999997543


Q ss_pred             CCccCcHHHHHHHHhCC
Q 016507          334 LKAKSDIPILLKRYMDK  350 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~  350 (388)
                         .+++++++++++++
T Consensus       162 ---~~~~~~~~~~i~~~  175 (182)
T d1vj0a2         162 ---TSHFVKTVSITSRN  175 (182)
T ss_dssp             ---HHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHC
Confidence               46788999998876

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.94  E-value=2.3e-26  Score=192.74  Aligned_cols=168  Identities=24%  Similarity=0.299  Sum_probs=152.4

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +|+.+||+++|++.|||+++ +..+++++++|||+|+ |++|++++|+++..|+.+|++++++++|+++++++|++++++
T Consensus         1 l~~~eAA~l~c~~~Ta~~al-~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~   79 (170)
T d1jvba2           1 LNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVIN   79 (170)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeec
Confidence            57899999999999999976 6789999999999996 999999999999999779999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      +++   +++.+.+++.+.+ ++|++|||+|+...++.++++++++ |+++.+|...  .+.+++...++.+++++.|++.
T Consensus        80 ~~~---~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~i~i~Gs~~  153 (170)
T d1jvba2          80 ASM---QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQ-GKYVMVGLFG--ADLHYHAPLITLSEIQFVGSLV  153 (170)
T ss_dssp             TTT---SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEE-EEEEECCSSC--CCCCCCHHHHHHHTCEEEECCS
T ss_pred             cCC---cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccC-CEEEEecccc--CccccCHHHHHhCCcEEEEEec
Confidence            887   7888999999888 8999999999998899999999997 9999999754  4578888889999999999975


Q ss_pred             cCCCccCcHHHHHHHHhCCC
Q 016507          332 GGLKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~  351 (388)
                      +.   +++++++++++++|+
T Consensus       154 ~~---~~d~~~~l~lv~~GK  170 (170)
T d1jvba2         154 GN---QSDFLGIMRLAEAGK  170 (170)
T ss_dssp             CC---HHHHHHHHHHHHTTS
T ss_pred             CC---HHHHHHHHHHHHcCC
Confidence            44   478999999999985

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.94  E-value=3.3e-26  Score=192.20  Aligned_cols=172  Identities=37%  Similarity=0.742  Sum_probs=148.6

Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++++||.++|.+.|+|+++.+.+++++|++|+|+|+|++|++++|+++++|+.+|++++.+++|+++++++|+++++|++
T Consensus         3 P~e~aa~l~Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~   82 (176)
T d1d1ta2           3 PPEKVCLIGCGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPK   82 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGG
T ss_pred             CHHHHHhhhhHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECcc
Confidence            57899999999999999988889999999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          255 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      +.  ....+.+.+.+.+ ++|++||++|.......++..+.++.|+++.+|.........+++..++ +++++.|++++.
T Consensus        83 ~~--~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-~~~~i~Gs~~G~  159 (176)
T d1d1ta2          83 DS--TKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLF-TGRTWKGCVFGG  159 (176)
T ss_dssp             GC--SSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGG
T ss_pred             cc--chHHHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHh-CCCEEEEEEEeC
Confidence            61  2345566666666 9999999999998788888877653489999998766667777766655 488999999888


Q ss_pred             CCccCcHHHHHHHHhC
Q 016507          334 LKAKSDIPILLKRYMD  349 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~  349 (388)
                      ...+++++++++++.+
T Consensus       160 ~~~~~dip~li~~~~~  175 (176)
T d1d1ta2         160 LKSRDDVPKLVTEFLA  175 (176)
T ss_dssp             CCHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHhC
Confidence            7778899999998765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-25  Score=187.10  Aligned_cols=168  Identities=20%  Similarity=0.355  Sum_probs=144.2

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +|+++||.+. ++++||+++ +.+++++|++|||+|+|++|++++|+++.+|+++|++++++++|+++++++|++++++.
T Consensus         1 vS~e~Aal~e-pla~a~~a~-~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~   78 (171)
T d1pl8a2           1 VTFEEGALIE-PLSVGIHAC-RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQI   78 (171)
T ss_dssp             SCHHHHHHHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccc
Confidence            5788998776 889999965 67899999999999999999999999999999899999999999999999999999998


Q ss_pred             CCCCCccHHHHHHhh--cCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEee
Q 016507          254 KNCGDKSVSQIIIDM--TDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSL  330 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~--~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~  330 (388)
                      .+   .+..+..+.+  +.+ ++|+||||+|++..++.++++++++ |+++.+|...  .+.++++..++.|++++.|++
T Consensus        79 ~~---~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~g-G~iv~~G~~~--~~~~~~~~~~~~k~l~i~Gs~  152 (171)
T d1pl8a2          79 SK---ESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSG-GTLVLVGLGS--EMTTVPLLHAAIREVDIKGVF  152 (171)
T ss_dssp             SS---CCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCC--SCCCCCHHHHHHTTCEEEECC
T ss_pred             cc---cccccccccccccCCCCceEEEeccCCchhHHHHHHHhcCC-CEEEEEecCC--CCCccCHHHHHHCCcEEEEEe
Confidence            77   4444333322  234 8999999999998899999999997 9999999754  456789999999999999985


Q ss_pred             ecCCCccCcHHHHHHHHhCCCCC
Q 016507          331 FGGLKAKSDIPILLKRYMDKELE  353 (388)
Q Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~  353 (388)
                      .  +  .++++++++++++|+++
T Consensus       153 ~--~--~~~~~~al~li~~gkid  171 (171)
T d1pl8a2         153 R--Y--CNTWPVAISMLASKSVN  171 (171)
T ss_dssp             S--C--SSCHHHHHHHHHTTSCC
T ss_pred             C--C--HhHHHHHHHHHHcCCCC
Confidence            2  2  46899999999999764

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=1.4e-26  Score=196.38  Aligned_cols=173  Identities=23%  Similarity=0.267  Sum_probs=146.8

Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKN  255 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~  255 (388)
                      +|||+++++++|||+++++.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+++++++++
T Consensus         1 eeAA~l~~~~~TA~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~-~vi~~~~~~~~~~~l~~~Ga~~vi~~~~   79 (183)
T d1pqwa_           1 NEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRLGVEYVGDSRS   79 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTTCCSEEEETTC
T ss_pred             CchhhhhHHHHHHHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccc-cceeeecccccccccccccccccccCCc
Confidence            5799999999999999999999999999999986 9999999999999999 8999989999999999999999999988


Q ss_pred             CCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCC
Q 016507          256 CGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGL  334 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  334 (388)
                         +++.+.+++.+++ ++|++|||+|++. ++.++++++++ |+++.+|.........++.. .+.+++++.++.+...
T Consensus        80 ---~~~~~~v~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  153 (183)
T d1pqwa_          80 ---VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPG-GRFIELGKKDVYADASLGLA-ALAKSASFSVVDLDLN  153 (183)
T ss_dssp             ---STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEE-EEEEECSCGGGTTTCEEEGG-GGTTTCEEEECCHHHH
T ss_pred             ---cCHHHHHHHHhCCCCEEEEEecccchH-HHHHHHHhcCC-CEEEEEccCCCCCCcccchH-HHhCCcEEEEEEccce
Confidence               8899999999988 9999999999876 99999999997 99999997543333334333 3457888888764332


Q ss_pred             C------ccCcHHHHHHHHhCCCCCCCc
Q 016507          335 K------AKSDIPILLKRYMDKELELDK  356 (388)
Q Consensus       335 ~------~~~~~~~~~~~~~~~~~~~~~  356 (388)
                      .      .++.++++++++++|++++-|
T Consensus       154 ~~~~~~~~~~~~~~v~~~i~~G~i~p~P  181 (183)
T d1pqwa_         154 LKLQPARYRQLLQHILQHVADGKLEVLP  181 (183)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             eccCHHHHHHHHHHHHHHHHCCCCceeC
Confidence            1      134688899999999887654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.93  E-value=1.4e-25  Score=188.90  Aligned_cols=174  Identities=39%  Similarity=0.675  Sum_probs=144.7

Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      |+++||.++|++.|||+++++.+++++|++|||+|+|++|++++++++..|+.+|++++++++|+++++++|+++++++.
T Consensus         2 Ple~aa~l~ca~~Tay~al~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~   81 (176)
T d2jhfa2           2 PLEKVCLIGCGFSTGYGSAVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQ   81 (176)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGG
T ss_pred             CHHHHhHhhcHHHHHHHHHHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecC
Confidence            56889999999999999998999999999999999999999999999999988999999999999999999999999875


Q ss_pred             CCCCccHHHHHHhhcC-CCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          255 NCGDKSVSQIIIDMTD-GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~-g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      +.  ++..+...+.+. +++|++||++|.......++..++.+ ++.+.++..............++.+++++.|++.++
T Consensus        82 ~~--~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~  158 (176)
T d2jhfa2          82 DY--KKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEA-YGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGG  158 (176)
T ss_dssp             GC--SSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTT-TCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGG
T ss_pred             Cc--hhHHHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcC-CcceEEecCCCCcccccccHHHHhCCCEEEEEEEeC
Confidence            51  333444444444 49999999999999889999999986 666666654444443333345666899999998887


Q ss_pred             CCccCcHHHHHHHHhCCC
Q 016507          334 LKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~  351 (388)
                      +..+++++++++++.+|+
T Consensus       159 ~~~~~~~~~li~~~~~GK  176 (176)
T d2jhfa2         159 FKSKDSVPKLVADFMAKK  176 (176)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CCHHHHHHHHHHHHHCcC
Confidence            777788999999999884

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.93  E-value=1.8e-25  Score=187.43  Aligned_cols=165  Identities=21%  Similarity=0.350  Sum_probs=145.8

Q ss_pred             ccccccccchhhhhHHHHHHhc-CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          176 PNRACLLSCGVSTGVGAAWRTA-NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~-~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      +.++|+++|+++|||+++.+.. .+++|++|||+|+|++|++++|+++.+|+.+|++++++++|+++++++|++++++++
T Consensus         6 l~eaA~l~~~~~Ta~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~   85 (172)
T d1h2ba2           6 LVEMAPLADAGITAYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDAR   85 (172)
T ss_dssp             HHHTGGGGTHHHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHhHHHhHHHHHHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCc
Confidence            5688999999999999987765 479999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          255 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      +   + ..+.+.+.+.+ ++|+||||+|+...++.++++++++ |+++.+|..   .+.+++...++.+++++.|++.+.
T Consensus        86 ~---~-~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~-G~iv~~G~~---~~~~~~~~~l~~k~~~i~Gs~~~~  157 (172)
T d1h2ba2          86 R---D-PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRM-GRLIIVGYG---GELRFPTIRVISSEVSFEGSLVGN  157 (172)
T ss_dssp             S---C-HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEE-EEEEECCCS---SCCCCCHHHHHHTTCEEEECCSCC
T ss_pred             c---c-HHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCC-CEEEEEeCc---ccccCCHHHHHhCCcEEEEEEecC
Confidence            6   3 45566677777 9999999999998899999999997 999999952   346788899999999999997654


Q ss_pred             CCccCcHHHHHHHHhCCC
Q 016507          334 LKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~  351 (388)
                         .++++++++++++|+
T Consensus       158 ---~~d~~~~l~l~~~GK  172 (172)
T d1h2ba2         158 ---YVELHELVTLALQGK  172 (172)
T ss_dssp             ---HHHHHHHHHHHHTTS
T ss_pred             ---HHHHHHHHHHHHcCC
Confidence               468999999999985

>d1o89a1 b.35.1.2 (A:1-115,A:293-323) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=8.3e-26  Score=183.27  Aligned_cols=130  Identities=14%  Similarity=0.033  Sum_probs=110.2

Q ss_pred             eeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCCCC
Q 016507           17 CRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDGVV   93 (388)
Q Consensus        17 ~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~~~   93 (388)
                      |||+++.+++++  +++++++.|+|++|||||||.|+|||++|+....|.++. ..+|.++|+|++|+|+++|.  +.++
T Consensus         1 MkA~v~~~~~~~~~l~i~~v~~p~~~~geVlVkV~a~gin~~D~~~~~G~~~~~~~~p~v~G~e~~G~V~~~~~--~~~~   78 (146)
T d1o89a1           1 LQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDALAITGKGKIIRNFPMIPGIDFAGTVRTSED--PRFH   78 (146)
T ss_dssp             CEEEEEECC---CEEEEEECCGGGSCSCSEEEEEEEEECCHHHHHHHHTCSSCCCSSSBCCCSEEEEEEEEECS--TTCC
T ss_pred             CeEEEEEcCCCceEEEEEEcCCCCCCCCEEEEEEeeccCccceeeEEEeecccccccceeccccccccceeecc--CCcc
Confidence            899999999877  778899999999999999999999999999999997654 56799999999999999876  4799


Q ss_pred             CCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcCCC
Q 016507           94 EGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVDPT  173 (388)
Q Consensus        94 vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP~~  173 (388)
                      +||+|.+...                        ..|...+                   |+||||+.+|.++++++|++
T Consensus        79 ~g~~v~~~~~------------------------~~g~~~~-------------------G~~Aey~~v~~~~vv~lP~~  115 (146)
T d1o89a1          79 AGQEVLLTGW------------------------GVGENHW-------------------GGLAEQARVKGDWLVAMPQG  115 (146)
T ss_dssp             TTCEEEEECT------------------------TBTTTBC-------------------CSSBSEEEECGGGCEECCTT
T ss_pred             ceeeEEeecc------------------------cceecCC-------------------CcceeeeeeeeeeEEECCCC
Confidence            9999975321                        1233333                   49999999999999999999


Q ss_pred             CCccccccccchhhhhHH
Q 016507          174 VPPNRACLLSCGVSTGVG  191 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~  191 (388)
                      +|+++||++++++.||+.
T Consensus       116 ls~~eAA~l~~a~~tA~~  133 (146)
T d1o89a1         116 QAAKEISLSEAPNFAEAI  133 (146)
T ss_dssp             SCCEEECGGGHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999988888754

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=2.6e-25  Score=185.43  Aligned_cols=165  Identities=22%  Similarity=0.334  Sum_probs=146.4

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +++++||+++|+++|||+++ +.+++++|++|||+|+|++|++++|++|.+|+ +|++++++++|+++++++|+++++|+
T Consensus         1 v~f~~aA~l~ca~~Ta~~al-~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~Ga~~~i~~   78 (166)
T d1llua2           1 VEFAEIAPILCAGVTVYKGL-KQTNARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKLGASLTVNA   78 (166)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEET
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhccCccccccc
Confidence            57899999999999999976 56899999999999999999999999999998 99999999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      ++   +++.+.+.+.+. +++.+++++++...++.++++++++ |+++.+|...  .+.+++...++.+++++.|++.+.
T Consensus        79 ~~---~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i~Gs~~~~  151 (166)
T d1llua2          79 RQ---EDPVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRG-GTIALVGLPP--GDFPTPIFDVVLKGLHIAGSIVGT  151 (166)
T ss_dssp             TT---SCHHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEE-EEEEECCCCS--SEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cc---hhHHHHHHHhhc-CCcccccccccchHHHHHHHHhcCC-cEEEEEEecC--CCccCCHHHHHhCCcEEEEEeecC
Confidence            88   778888877665 5677777888888899999999997 9999999643  467888999999999999987544


Q ss_pred             CCccCcHHHHHHHHhCC
Q 016507          334 LKAKSDIPILLKRYMDK  350 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~  350 (388)
                         +++++++++++++|
T Consensus       152 ---~~d~~e~l~l~~~G  165 (166)
T d1llua2         152 ---RADLQEALDFAGEG  165 (166)
T ss_dssp             ---HHHHHHHHHHHHTT
T ss_pred             ---HHHHHHHHHHHHCc
Confidence               46899999999887

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=9.7e-26  Score=190.49  Aligned_cols=170  Identities=14%  Similarity=0.202  Sum_probs=138.8

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +|+++||+++++++|||+++.+.+++++|++|||+|+ |++|++++|+|+..|+ +|+++++++++.++++++|+++++|
T Consensus         1 isfe~AA~~~~~~~TA~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2           1 ISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhcCCeEEEE
Confidence            5889999999999999999988889999999999976 8899999999999999 9999999999999999999999999


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhc-CcEEEEee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHS-GKILMGSL  330 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~-~~~i~g~~  330 (388)
                      +++   +++.+.++++|+| ++|+|+|+++++. +..++.+++++ |+++.++... .....++...+..+ .+.+....
T Consensus        80 ~~~---~d~~~~v~~~t~g~g~d~v~d~~g~~~-~~~~~~~l~~~-G~~v~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~  153 (179)
T d1qora2          80 YRE---EDLVERLKEITGGKKVRVVYDSVGRDT-WERSLDCLQRR-GLMVSFGNSS-GAVTGVNLGILNQKGSLYVTRPS  153 (179)
T ss_dssp             TTT---SCHHHHHHHHTTTCCEEEEEECSCGGG-HHHHHHTEEEE-EEEEECCCTT-CCCCCBCTHHHHHTTSCEEECCC
T ss_pred             CCC---CCHHHHHHHHhCCCCeEEEEeCccHHH-HHHHHHHHhcC-Ceeeeccccc-CCccccchhhhhccceEEEEeeE
Confidence            988   8999999999988 9999999999876 99999999997 9999998753 34445555555443 34443332


Q ss_pred             ecCCC-cc----CcHHHHHHHHhCC
Q 016507          331 FGGLK-AK----SDIPILLKRYMDK  350 (388)
Q Consensus       331 ~~~~~-~~----~~~~~~~~~~~~~  350 (388)
                      +..+. ..    +.+.++++++++|
T Consensus       154 l~~~~~~~~~~~~~~~~l~~lv~~G  178 (179)
T d1qora2         154 LQGYITTREELTEASNELFSLIASG  178 (179)
T ss_dssp             HHHHCCSHHHHHHHHHHHHHHHHTT
T ss_pred             EeeecCCHHHHHHHHHHHHHHHHCc
Confidence            22211 11    2234566666665

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.93  E-value=9.2e-26  Score=188.48  Aligned_cols=171  Identities=13%  Similarity=0.110  Sum_probs=136.7

Q ss_pred             CCccccccccchhhhhHHHH---HHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          174 VPPNRACLLSCGVSTGVGAA---WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l---~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +|+++||+++++++|||.++   ++..+.++|++|||+|+ |++|.+++|+|+..|+ +|+++.+++++.++++++|+++
T Consensus         1 lS~~eAAal~~aglTA~~a~~~L~~~g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga-~Viat~~s~~k~~~~~~lGa~~   79 (176)
T d1xa0a2           1 LTLKEAMAIGTAGFTAALSIHRLEEHGLTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGAKE   79 (176)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTCSE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCEEEEEeccchHHHHHHHHHHHcCC-ceEEecCchHHHHHHHhcccce
Confidence            58999999999999999664   45677889999999986 9999999999999999 9999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      ++|+++    .+.+.++...++++|+|||++|+.. +..++++|+++ |+++.+|.. .....++++..++.|++++.|.
T Consensus        80 vi~~~~----~~~~~~~~~~~~gvD~vid~vgg~~-~~~~l~~l~~~-Griv~~G~~-~g~~~~~~~~~~~~k~~~i~Gv  152 (176)
T d1xa0a2          80 VLARED----VMAERIRPLDKQRWAAAVDPVGGRT-LATVLSRMRYG-GAVAVSGLT-GGAEVPTTVHPFILRGVSLLGI  152 (176)
T ss_dssp             EEECC-------------CCSCCEEEEEECSTTTT-HHHHHHTEEEE-EEEEECSCC-SSSCCCCCSHHHHHTTCEEEEC
T ss_pred             eeecch----hHHHHHHHhhccCcCEEEEcCCchh-HHHHHHHhCCC-ceEEEeecc-cCcccCCCHHHHHHCCcEEEEE
Confidence            999865    3444444444449999999999987 99999999997 999999985 3456789999999999999997


Q ss_pred             eecCCCccCcHHHHHHHHhCCCCCC
Q 016507          330 LFGGLKAKSDIPILLKRYMDKELEL  354 (388)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~  354 (388)
                      .... ...+...++++.+ .++++|
T Consensus       153 ~~~~-~~~~~~~~~~~~l-ag~lkP  175 (176)
T d1xa0a2         153 DSVY-CPMDLRLRIWERL-AGDLKP  175 (176)
T ss_dssp             CSSS-CCHHHHHHHHHHH-HTTTCC
T ss_pred             eCCc-CCHHHHHHHHHHH-hcccCC
Confidence            4322 2234555566665 365554

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.93  E-value=3.6e-25  Score=186.22  Aligned_cols=173  Identities=41%  Similarity=0.675  Sum_probs=145.0

Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      |+++||++.|++.|+|+++++.+++++|++|+|+|+|++|++++++++..++.+|++++++++|+++++++|+++++|+.
T Consensus         2 P~e~aa~l~ca~~Tay~a~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~   81 (175)
T d1cdoa2           2 PLDTVCLLGCGVSTGFGAAVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPN   81 (175)
T ss_dssp             CHHHHGGGGTHHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGG
T ss_pred             CHHHHHHhhcHHHHHHHHHHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCC
Confidence            57889999999999999998899999999999999999999999999999988999999999999999999999999987


Q ss_pred             CCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          255 NCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      +.  .+..+.+++.+.+ ++|++||++|....+..++.++.++ |.++.++.... .....+...++.+++++.|++.+.
T Consensus        82 ~~--~~~~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g-~~~~~~~g~~~-~~~~~~~~~~~~~~~~i~Gs~~G~  157 (175)
T d1cdoa2          82 DH--SEPISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKG-WGVSVLVGWTD-LHDVATRPIQLIAGRTWKGSMFGG  157 (175)
T ss_dssp             GC--SSCHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTT-TCEEEECSCCS-SSCEEECHHHHHTTCEEEECSGGG
T ss_pred             Cc--chhHHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCC-CcceeEEEecC-CcccCccHHHHHCCcEEEEEEEeC
Confidence            61  3345556666555 9999999999998788989988886 66655554333 333444555666789999998888


Q ss_pred             CCccCcHHHHHHHHhCCC
Q 016507          334 LKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~  351 (388)
                      +..+++++++++++++|+
T Consensus       158 ~~~~~d~~~~i~l~~~gK  175 (175)
T d1cdoa2         158 FKGKDGVPKMVKAYLDKK  175 (175)
T ss_dssp             CCHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHHHHHcCC
Confidence            777789999999999884

>d1tt7a1 b.35.1.2 (A:2-127,A:295-330) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.92  E-value=2e-27  Score=197.09  Aligned_cols=152  Identities=18%  Similarity=0.151  Sum_probs=126.6

Q ss_pred             cceeeeeecCCCCC--eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCC-CCCCcccccceeEEEEEecCCCCC
Q 016507           15 IQCRAAIATAPGEP--LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP-AVFPRILGHEAIGVVESVGENVDG   91 (388)
Q Consensus        15 ~~~ka~~~~~~~~~--~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~-~~~p~v~G~e~~G~Vv~vG~~v~~   91 (388)
                      .+|||+++.+++.+  +++++++.|++++|||||||+|+|||++|++.+.|.++. ..+|.++|+|++|+|++  +.++.
T Consensus         2 ~~~ka~~~~~~g~~~~l~~~~v~~p~l~~~eVLVkV~a~gin~~D~~~~~g~~~~~~~~~~~~g~e~~G~v~~--~~~~~   79 (162)
T d1tt7a1           2 TLFQALQAEKNADDVSVHVKTISTEDLPKDGVLIKVAYSGINYKDGLAGKAGGNIVREYPLILGIDAAGTVVS--SNDPR   79 (162)
T ss_dssp             CEEEEEEECCGGGSCCCEEEEEESSSSCSSSEEEEECCEEECHHHHHHTSTTCTTCSSCSEECCSEEEEEEEE--CSSTT
T ss_pred             CcEEEEEEEecCCCeEEEEEEcCCCCCCCCEEEEEEEEecccchhhheeeecccccccceeeeeeeccccccc--ccccc
Confidence            35999999987755  999999999999999999999999999999999988764 45688999999999998  45678


Q ss_pred             CCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceEEcC
Q 016507           92 VVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVVKVD  171 (388)
Q Consensus        92 ~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~lP  171 (388)
                      +++||+|.....                        ..|...+|                   +|+||+.+|+++++++|
T Consensus        80 ~~~g~~v~~~~~------------------------~~g~~~~G-------------------~~aey~~v~~~~l~~iP  116 (162)
T d1tt7a1          80 FAEGDEVIATSY------------------------ELGVSRDG-------------------GLSEYASVPGDWLVPLP  116 (162)
T ss_dssp             CCTTCEEEEEST------------------------TBTTTBCC-------------------SSBSSEEECGGGEEECC
T ss_pred             cccceeeEeeec------------------------cceecccc-------------------ccceEEEecHHHEEECC
Confidence            999999975422                        13444444                   99999999999999999


Q ss_pred             CCCCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-ch
Q 016507          172 PTVPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GS  212 (388)
Q Consensus       172 ~~~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~  212 (388)
                      +++|+++||++++.++|||.++ ...+...+++|||.|+ |.
T Consensus       117 ~~ls~~~Aa~~~~~~~ta~~~~-~~~~~~~~~~Vli~ga~G~  157 (162)
T d1tt7a1         117 QNLSLKEAMVDQLLTIVDREVS-LEETPGALKDILQNRIQGR  157 (162)
T ss_dssp             TTCCHHHHHHSCSTTSEEEEEC-STTHHHHHHHTTTTCCSSE
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEECCcce
Confidence            9999999999999999999754 3334455577888876 54

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.92  E-value=2.8e-25  Score=188.06  Aligned_cols=165  Identities=18%  Similarity=0.189  Sum_probs=141.1

Q ss_pred             ccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGD  258 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~  258 (388)
                      +++.++++|||+++.+.+++++|++|||+|+ |++|++++|+||..|+ +||++++++++.++++++|+++++++++   
T Consensus         8 ~~lg~~glTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga-~vi~~~~~~~~~~~~~~~Ga~~vi~~~~---   83 (182)
T d1v3va2           8 GTIGMPGLTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIGFDAAFNYKT---   83 (182)
T ss_dssp             TTTSHHHHHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTCSEEEETTS---
T ss_pred             HHHhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCC-EEEEeCCCHHHHHHHHhhhhhhhccccc---
Confidence            4678899999999999999999999999987 9999999999999999 9999999999999999999999999988   


Q ss_pred             ccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCC-----CCCccccCHHHHHhcCcEEEEeeec
Q 016507          259 KSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ-----PGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       259 ~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~-----~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      +++.+.+.+.+.+ ++|+|||++|++. ++.++++++++ |+++.+|...     ...+..+++..++.|++++.|+++.
T Consensus        84 ~~~~~~~~~~~~~~Gvd~v~D~vG~~~-~~~~~~~l~~~-G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~  161 (182)
T d1v3va2          84 VNSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDF-GKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVY  161 (182)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHGGGEEEE-EEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGG
T ss_pred             ccHHHHHHHHhhcCCCceeEEecCchh-hhhhhhhccCC-CeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEe
Confidence            7777777777766 9999999999765 99999999997 9999999532     2234457777889999999999877


Q ss_pred             CCCc---cCcHHHHHHHHhCC
Q 016507          333 GLKA---KSDIPILLKRYMDK  350 (388)
Q Consensus       333 ~~~~---~~~~~~~~~~~~~~  350 (388)
                      .+..   .+.++++++++++|
T Consensus       162 ~~~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         162 RWQGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             GCCHHHHHHHHHHHHHHHHTT
T ss_pred             ccChHHHHHHHHHHHHHHhCc
Confidence            6642   23466777777765

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.92  E-value=2.4e-24  Score=180.25  Aligned_cols=168  Identities=21%  Similarity=0.327  Sum_probs=140.7

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +|+++||.+. ++++||+++ +.+++++|++|||+|+|++|++++|+|+++|+ +|++++++++|+++++++|++.+++.
T Consensus         1 VS~e~Aal~e-Pla~a~~a~-~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~ga~~~~~~   77 (170)
T d1e3ja2           1 VSLEEGALLE-PLSVGVHAC-RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGADVTLVV   77 (170)
T ss_dssp             SCHHHHHTHH-HHHHHHHHH-HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTCSEEEEC
T ss_pred             CCHHHHHHHH-HHHHHHHHH-HHhCCCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHcCCcEEEec
Confidence            5788998876 788999975 67899999999999999999999999999999 99999999999999999999887654


Q ss_pred             CCCC--CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          254 KNCG--DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       254 ~~~~--~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      +...  ..+..+.+.+..++++|+||||+|++..++.++++++++ |+++.+|...  .+.++++..++.|++++.|++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~-G~iv~~G~~~--~~~~~~~~~~~~k~i~i~gs~~  154 (170)
T d1e3ja2          78 DPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTG-GTLMLVGMGS--QMVTVPLVNACAREIDIKSVFR  154 (170)
T ss_dssp             CTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTT-CEEEECSCCS--SCCCCCHHHHHTTTCEEEECCS
T ss_pred             cccccccchhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcC-CceEEEecCC--CCCCcCHHHHHHCCCEEEEEEC
Confidence            4311  122334454544459999999999998899999999997 9999999753  4567888899999999999842


Q ss_pred             cCCCccCcHHHHHHHHhCCC
Q 016507          332 GGLKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       332 ~~~~~~~~~~~~~~~~~~~~  351 (388)
                          +.++++++++++++|+
T Consensus       155 ----~~~~~~~ai~li~~Gk  170 (170)
T d1e3ja2         155 ----YCNDYPIALEMVASGR  170 (170)
T ss_dssp             ----CSSCHHHHHHHHHTTS
T ss_pred             ----CHHHHHHHHHHHHcCC
Confidence                2458999999999984

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.92  E-value=1.4e-24  Score=181.28  Aligned_cols=168  Identities=21%  Similarity=0.401  Sum_probs=148.0

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      +|+++||+++|+++|||+++ +..++++|++|||+|+|++|++++++++..|+ +|++++++++|+++++++|+++++++
T Consensus         1 ls~eeAA~l~~~~~Ta~~al-~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~Ga~~~~~~   78 (168)
T d1rjwa2           1 LSFEEAAPIFCAGVTTYKAL-KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGADLVVNP   78 (168)
T ss_dssp             SCHHHHGGGGTHHHHHHHHH-HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCSEEECT
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhcCcceeccc
Confidence            58899999999999999976 56889999999999999999999999999999 89999999999999999999999999


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      .+   .++.+.+++.+.+. +.++++.++...+..++++++++ |+++.+|..  ..+.+++...++.+++++.|++...
T Consensus        79 ~~---~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~a~~~l~~~-G~i~~~g~~--~~~~~~~~~~~~~~~~~i~gs~~~~  151 (168)
T d1rjwa2          79 LK---EDAAKFMKEKVGGV-HAAVVTAVSKPAFQSAYNSIRRG-GACVLVGLP--PEEMPIPIFDTVLNGIKIIGSIVGT  151 (168)
T ss_dssp             TT---SCHHHHHHHHHSSE-EEEEESSCCHHHHHHHHHHEEEE-EEEEECCCC--SSEEEEEHHHHHHTTCEEEECCSCC
T ss_pred             cc---chhhhhcccccCCC-ceEEeecCCHHHHHHHHHHhccC-CceEecccc--cCCCCCCHHHHHHCCcEEEEEeeCC
Confidence            88   78888899888754 44556677777799999999997 999999974  3566788889999999999986443


Q ss_pred             CCccCcHHHHHHHHhCCCCC
Q 016507          334 LKAKSDIPILLKRYMDKELE  353 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~~  353 (388)
                         +++++++++++++|+++
T Consensus       152 ---~~~~~~~l~l~~~Gkik  168 (168)
T d1rjwa2         152 ---RKDLQEALQFAAEGKVK  168 (168)
T ss_dssp             ---HHHHHHHHHHHHTTSCC
T ss_pred             ---HHHHHHHHHHHHhCCCC
Confidence               57899999999999763

>d1gu7a1 b.35.1.2 (A:23-160,A:350-386) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.92  E-value=1.7e-27  Score=200.69  Aligned_cols=155  Identities=19%  Similarity=0.142  Sum_probs=127.9

Q ss_pred             cceeeeeecCCCCC---eE--EEEeecCCCCCCeEEEEEceeccCcccccccccCCCC----------CCCCccccccee
Q 016507           15 IQCRAAIATAPGEP---LV--IDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFP----------AVFPRILGHEAI   79 (388)
Q Consensus        15 ~~~ka~~~~~~~~~---~~--~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~----------~~~p~v~G~e~~   79 (388)
                      ++|||+++.++|+|   ++  ..++|.|+|+++||||||++++||++|++.++|.++.          ..+|.++|+|++
T Consensus         2 ~t~kA~v~~~~G~p~~~l~l~~~~~p~p~~~~~eVlVkv~a~~i~~~D~~~~~G~~~~~~~~~~~~~~~~~~~v~G~e~~   81 (175)
T d1gu7a1           2 ITAQAVLYTQHGEPKDVLFTQSFEIDDDNLAPNEVIVKTLGSPVNPSDINQIQGVYPSKPAKTTGFGTTEPAAPCGNEGL   81 (175)
T ss_dssp             EEEEEEEESSCSCHHHHCEEEEEEECTTSCCTTEEEEEEEEEEECHHHHHHHHTCSSCCCCCBSTTCCSSCBEECCSCCE
T ss_pred             ceeEEEEEccCCCcccccEEEEEECCCCCCCcCEEEEEEEEeccCcceeEEEecCcccccccccccCCCCCCcccccccc
Confidence            67999999999987   44  4577788889999999999999999999999886532          246789999999


Q ss_pred             EEEEEecCCCCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeee
Q 016507           80 GVVESVGENVDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEY  159 (388)
Q Consensus        80 G~Vv~vG~~v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~  159 (388)
                      |+|+++|..+..+++||+|.....                             .                   .|+|+||
T Consensus        82 g~V~~~~~~~~~~~~g~~v~~~~~-----------------------------~-------------------~g~~aey  113 (175)
T d1gu7a1          82 FEVIKVGSNVSSLEAGDWVIPSHV-----------------------------N-------------------FGTWRTH  113 (175)
T ss_dssp             EEEEEECTTCCSCCTTCEEEESSS-----------------------------C-------------------CCCSBSE
T ss_pred             cccccccccccccccccceecccc-----------------------------c-------------------cccccce
Confidence            999999999999999999974321                             1                   2499999


Q ss_pred             EEeecCceEEcCCCCCccccccccchhhhhHHHHHH-hcCCCCCCEEEEEc-c-chhHHHHHH
Q 016507          160 TVLDIAHVVKVDPTVPPNRACLLSCGVSTGVGAAWR-TANVEVGSTVVIFG-L-GSIGLAVAE  219 (388)
Q Consensus       160 ~~~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~~l~~-~~~~~~~~~VlI~G-a-g~vG~~ai~  219 (388)
                      +.+++++++++|++++.+.+  +.+..+|||+++.. ..++++|++|||+| + |++|++++|
T Consensus       114 ~~v~~~~~~~iP~~~~~~~a--~~~~~~ta~~~l~~~~~~~~~g~~vli~gaa~~gvG~~~iQ  174 (175)
T d1gu7a1         114 ALGNDDDFIKLPNPAQSKAN--GKPNGLTDAKSIETLYDGTKPLHELYQDGVANSKDGKQLIT  174 (175)
T ss_dssp             EEEEGGGEEEECCHHHHHHT--TCSCCCCCCCCEEEECCSSSCHHHHHHHHHHTGGGSCEEEE
T ss_pred             eeehhhhccCCCccchhhhh--ccchHHHHHHHHHHHhcCCCCCCEEEEECccchhhhheEEe
Confidence            99999999999998765544  44577888886543 35799999999997 4 779988776

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.91  E-value=6.1e-25  Score=183.75  Aligned_cols=147  Identities=21%  Similarity=0.344  Sum_probs=123.2

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~  252 (388)
                      +|+++||++++++.|||+++ +.+++++|++|||+|+ |++|++++|+||.+|+ +|+++++++++.++++++|+++++|
T Consensus         1 ls~eeAA~l~~~~~TA~~al-~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~lGa~~~i~   78 (171)
T d1iz0a2           1 LSPEEAAAFPVSFLTAYLAL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALGAEEAAT   78 (171)
T ss_dssp             CCHHHHHTSHHHHHHHHHHH-HHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHHHHHH-HHhCCCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccccccceeee
Confidence            57899999999999999987 4589999999999986 9999999999999999 8999999999999999999999998


Q ss_pred             CCCCCCccHHHHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeee
Q 016507          253 SKNCGDKSVSQIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLF  331 (388)
Q Consensus       253 ~~~~~~~~~~~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~  331 (388)
                      +.+     ..   .+.+.+ ++|+||||+|. . +..++++++++ |+++.+|.. .....+++...++.|++++.|+++
T Consensus        79 ~~~-----~~---~~~~~~~g~D~v~d~~G~-~-~~~~~~~l~~~-G~~v~~G~~-~g~~~~~~~~~~~~k~~~i~g~~~  146 (171)
T d1iz0a2          79 YAE-----VP---ERAKAWGGLDLVLEVRGK-E-VEESLGLLAHG-GRLVYIGAA-EGEVAPIPPLRLMRRNLAVLGFWL  146 (171)
T ss_dssp             GGG-----HH---HHHHHTTSEEEEEECSCT-T-HHHHHTTEEEE-EEEEEC--------CCCCTTHHHHTTCEEEECCH
T ss_pred             hhh-----hh---hhhhccccccccccccch-h-HHHHHHHHhcC-CcEEEEeCC-CCCCCCccHHHHHHCCcEEEEEeC
Confidence            754     22   333445 89999999884 3 78999999997 999999974 345567888888999999999987


Q ss_pred             cCC
Q 016507          332 GGL  334 (388)
Q Consensus       332 ~~~  334 (388)
                      ..+
T Consensus       147 ~~~  149 (171)
T d1iz0a2         147 TPL  149 (171)
T ss_dssp             HHH
T ss_pred             cCh
Confidence            654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.91  E-value=6.6e-25  Score=186.76  Aligned_cols=174  Identities=16%  Similarity=0.142  Sum_probs=141.6

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEE-cc-chhHHHHHHHHHHcCCcEEEEEcCCc----hHHHHHHHcCC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIF-GL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIGKRFGV  247 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~-Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~----~~~~~~~~lga  247 (388)
                      +|+++||+++++++|||+++.+..++++|++|||+ |+ |++|++++|+||.+|+ +||++.+++    ++.++++++|+
T Consensus         1 ls~~~AA~l~~~~~TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~lGa   79 (189)
T d1gu7a2           1 LTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKELGA   79 (189)
T ss_dssp             CCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHHTC
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhccc
Confidence            58899999999999999999888999999999997 65 9999999999999999 888876554    34567789999


Q ss_pred             cEEEcCCCCCCccHHHHHHhhc---CCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCc
Q 016507          248 TEFVNSKNCGDKSVSQIIIDMT---DGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGK  324 (388)
Q Consensus       248 ~~v~~~~~~~~~~~~~~i~~~~---~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~  324 (388)
                      ++++++++.+..++.+.+++.+   ++++|+|||++|++. +..++++++++ |+++.+|.. +..+.+++...++.|++
T Consensus        80 d~vi~~~~~~~~~~~~~v~~~~~~~g~~vdvv~D~vg~~~-~~~~~~~l~~~-G~~v~~G~~-~~~~~~~~~~~l~~k~~  156 (189)
T d1gu7a2          80 TQVITEDQNNSREFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNN-GLMLTYGGM-SFQPVTIPTSLYIFKNF  156 (189)
T ss_dssp             SEEEEHHHHHCGGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTT-CEEEECCCC-SSCCEEECHHHHHHSCC
T ss_pred             cEEEeccccchhHHHHHHHHHHhhccCCceEEEECCCcch-hhhhhhhhcCC-cEEEEECCc-cCCCccCcHHHHHHCCc
Confidence            9999875423345666666654   338999999999877 89999999997 999999974 45667899999999999


Q ss_pred             EEEEeeecCCCc------cCcHHHHHHHHhCCC
Q 016507          325 ILMGSLFGGLKA------KSDIPILLKRYMDKE  351 (388)
Q Consensus       325 ~i~g~~~~~~~~------~~~~~~~~~~~~~~~  351 (388)
                      ++.|+++..+..      .+.+.++++++++|+
T Consensus       157 ~i~G~~~~~~~~~~~~~~~~~~~~l~~l~~~Gk  189 (189)
T d1gu7a2         157 TSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK  189 (189)
T ss_dssp             EEEECCHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEEehHhhhhCHHHHHHHHHHHHHHHHcCC
Confidence            999987654321      235677888887774

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.3e-24  Score=181.35  Aligned_cols=165  Identities=19%  Similarity=0.282  Sum_probs=136.1

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS  253 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~  253 (388)
                      .+++.+|.+.|...|+|+++ +.+++++|++|||+|+|++|++++|+||.+|+ ++++++++++++++++++|+++++|+
T Consensus         4 ~~~a~~Apl~Cag~Tay~al-~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~lGad~~i~~   81 (168)
T d1uufa2           4 EQLAAVAPLLCAGITTYSPL-RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGADEVVNS   81 (168)
T ss_dssp             GGHHHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTCSEEEET
T ss_pred             ccHHHHHHHHhHHHHHHHHH-HHhCCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhccCCcEEEEC
Confidence            45677888999999999976 67999999999999999999999999999999 77789999999999999999999998


Q ss_pred             CCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecC
Q 016507          254 KNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGG  333 (388)
Q Consensus       254 ~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~  333 (388)
                      .+   .+...    ...+++|++|||+|+...+..++++++++ |+++.+|.. .+....++...++.+++++.|+..++
T Consensus        82 ~~---~~~~~----~~~~~~D~vid~~g~~~~~~~~~~~l~~~-G~iv~~G~~-~~~~~~~~~~~l~~k~~~i~Gs~~~~  152 (168)
T d1uufa2          82 RN---ADEMA----AHLKSFDFILNTVAAPHNLDDFTTLLKRD-GTMTLVGAP-ATPHKSPEVFNLIMKRRAIAGSMIGG  152 (168)
T ss_dssp             TC---HHHHH----TTTTCEEEEEECCSSCCCHHHHHTTEEEE-EEEEECCCC--------CHHHHHTTTCEEEECCSCC
T ss_pred             ch---hhHHH----HhcCCCceeeeeeecchhHHHHHHHHhcC-CEEEEeccC-CCCcccccHHHHHHCCcEEEEEeecC
Confidence            87   43222    11238999999999887799999999997 999999974 34455678888889999999997544


Q ss_pred             CCccCcHHHHHHHHhCCCC
Q 016507          334 LKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       334 ~~~~~~~~~~~~~~~~~~~  352 (388)
                         ..++++++++++++++
T Consensus       153 ---~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2         153 ---IPETQEMLDFCAEHGI  168 (168)
T ss_dssp             ---HHHHHHHHHHHHHHTC
T ss_pred             ---HHHHHHHHHHHHHcCC
Confidence               4689999999988753

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=7.6e-25  Score=182.82  Aligned_cols=165  Identities=19%  Similarity=0.194  Sum_probs=137.8

Q ss_pred             CccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          175 PPNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       175 ~~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      |++.||.+.|++.|||+++ +.+++++|++|||+|+|++|++++|+||.+|+ +|++++++++|+++++++|+++++++.
T Consensus         2 p~e~AApl~cag~Ta~~al-~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~~~i~~~   79 (168)
T d1piwa2           2 PSHLAAPLLCGGLTVYSPL-VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGADHYIATL   79 (168)
T ss_dssp             CHHHHGGGGTHHHHHHHHH-HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCSEEEEGG
T ss_pred             CHHHHHHHHHHHHHHHHHH-HHhCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCcEEeecc
Confidence            4577899999999999976 56899999999999999999999999999999 899999999999999999999999876


Q ss_pred             CCCCccHHHHHHhhcCCCccEEEEccCCHH--HHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          255 NCGDKSVSQIIIDMTDGGADYCFECVGLAS--LVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       255 ~~~~~~~~~~i~~~~~g~~dvvid~~g~~~--~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      +.  .++.+    ...+++|+++||+++..  .+..++++++++ |+++.+|...  .+..++...++.|++++.|+..+
T Consensus        80 ~~--~~~~~----~~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~-G~iv~~G~~~--~~~~~~~~~~~~k~~~i~Gs~~g  150 (168)
T d1piwa2          80 EE--GDWGE----KYFDTFDLIVVCASSLTDIDFNIMPKAMKVG-GRIVSISIPE--QHEMLSLKPYGLKAVSISYSALG  150 (168)
T ss_dssp             GT--SCHHH----HSCSCEEEEEECCSCSTTCCTTTGGGGEEEE-EEEEECCCCC--SSCCEEECGGGCBSCEEEECCCC
T ss_pred             ch--HHHHH----hhhcccceEEEEecCCccchHHHHHHHhhcc-ceEEEecccc--ccccccHHHHHhCCcEEEEEeeC
Confidence            51  23332    22348999999988643  367889999997 9999999754  34566666788899999998755


Q ss_pred             CCCccCcHHHHHHHHhCCCCC
Q 016507          333 GLKAKSDIPILLKRYMDKELE  353 (388)
Q Consensus       333 ~~~~~~~~~~~~~~~~~~~~~  353 (388)
                      +   .++++++++++++|+++
T Consensus       151 ~---~~~~~e~l~li~~gkIk  168 (168)
T d1piwa2         151 S---IKELNQLLKLVSEKDIK  168 (168)
T ss_dssp             C---HHHHHHHHHHHHHTTCC
T ss_pred             C---HHHHHHHHHHHHhCCCC
Confidence            4   46899999999999763

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.9e-23  Score=176.11  Aligned_cols=172  Identities=17%  Similarity=0.185  Sum_probs=132.8

Q ss_pred             CCccccccccchhhhhHHHHHHhcCCCCC--CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHHHcCCcE
Q 016507          174 VPPNRACLLSCGVSTGVGAAWRTANVEVG--STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTE  249 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~~~~~~~~--~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~lga~~  249 (388)
                      +|+...| ++++++|||.++++.+++++|  ++|||+|+ |++|++++|+||.+|+++|+++++++++.. +.+.+|+++
T Consensus         2 ~~~~~ga-lg~~glTA~~~l~~~~~~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~   80 (187)
T d1vj1a2           2 LSYFLGA-IGMPGLTSLIGVQEKGHISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDA   80 (187)
T ss_dssp             GGGGGTT-TSHHHHHHHHHHHHHSCCCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSE
T ss_pred             ccHHHHH-hhcHHHHHHHHHHHHhCCCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceE
Confidence            4566654 677899999999999999987  88999986 999999999999999977887776766555 556799999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCC---CC--cccc---CHHHHHh
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQP---GS--QLSL---SSFEVLH  321 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~---~~--~~~~---~~~~~~~  321 (388)
                      ++|+++   +++.+.+++.++.++|+|||++|++. +..++++++++ |+++.+|....   ..  ....   ....+..
T Consensus        81 vi~~~~---~~~~~~~~~~~~~GvDvv~D~vGg~~-~~~~~~~l~~~-G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~  155 (187)
T d1vj1a2          81 AVNYKT---GNVAEQLREACPGGVDVYFDNVGGDI-SNTVISQMNEN-SHIILCGQISQYNKDVPYPPPLPPAVEAIRKE  155 (187)
T ss_dssp             EEETTS---SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEE-EEEEEC------------CCCCCHHHHHHHHH
T ss_pred             Eeeccc---hhHHHHHHHHhccCceEEEecCCchh-HHHHhhhcccc-ccEEEeccccccccccccCCchHHHHHHHHHh
Confidence            999998   88999999998779999999999876 99999999997 99999996421   01  1111   1233457


Q ss_pred             cCcEEEEeeecCCCc--cCcHHHHHHHHhCCC
Q 016507          322 SGKILMGSLFGGLKA--KSDIPILLKRYMDKE  351 (388)
Q Consensus       322 ~~~~i~g~~~~~~~~--~~~~~~~~~~~~~~~  351 (388)
                      |++++.|+.+..+..  .+.++++.+++.+|+
T Consensus       156 k~i~~~g~~~~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         156 RNITRERFTVLNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             TTCEEEECCGGGCGGGHHHHHHHHHHHHHHTS
T ss_pred             cceEEEEeEecchHHHHHHHHHHHHHHHHCcC
Confidence            899999987765532  234667777777774

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=2.6e-22  Score=170.86  Aligned_cols=167  Identities=25%  Similarity=0.224  Sum_probs=140.4

Q ss_pred             cccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCC
Q 016507          177 NRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNC  256 (388)
Q Consensus       177 ~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~  256 (388)
                      ++.++++..+.|||+++ +.+++++|++|||+|+|++|++++++++.+|+.+|++++.+++|+++++++|+++++++.+ 
T Consensus         2 ~d~~~l~d~~~ta~~a~-~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~-   79 (195)
T d1kola2           2 RDLTCLSDILPTGYHGA-VTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLD-   79 (195)
T ss_dssp             HHHGGGGTHHHHHHHHH-HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSS-
T ss_pred             chHHhcccHHHHHHHHH-HHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCC-
Confidence            35677788999999986 6799999999999999999999999999999989999999999999999999999999888 


Q ss_pred             CCccHHHHHHhhcCC-CccEEEEccCC---------------HHHHHHHHHHhhcCCceEEEEccCCCCCc---------
Q 016507          257 GDKSVSQIIIDMTDG-GADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVDQPGSQ---------  311 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g-~~dvvid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~~~~~~---------  311 (388)
                        .++.+.+.+++++ ++|++|||+|.               ...++.++++++++ |+++.+|.+.+..+         
T Consensus        80 --~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~g-G~v~~~G~~~~~~~~~~~~~~~~  156 (195)
T d1kola2          80 --TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVA-GKIGIPGLYVTEDPGAVDAAAKI  156 (195)
T ss_dssp             --SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEE-EEEEECSCCCSCCTTCSSHHHHT
T ss_pred             --cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcC-CEEEEeeecCCCcccchhhhhhc
Confidence              8899999999998 99999999984               35699999999997 99999997543322         


Q ss_pred             --cccCHHHHHhcCcEEEEeeecCCCccCcHHHHHHHHhCCC
Q 016507          312 --LSLSSFEVLHSGKILMGSLFGGLKAKSDIPILLKRYMDKE  351 (388)
Q Consensus       312 --~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  351 (388)
                        .++++..++.|++.+.+..   ..-++.++++++++.+++
T Consensus       157 ~~~~~~~~~~~~k~~~i~~g~---~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         157 GSLSIRFGLGWAKSHSFHTGQ---TPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             TCCCCCHHHHHHTTCEEEESS---CCHHHHHHHHHHHHHTTS
T ss_pred             CceeeeHHHHHhhcceeccCC---CchHHHHHHHHHHHHcCC
Confidence              3455566778888876432   222345788898887763

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.2e-22  Score=168.20  Aligned_cols=149  Identities=15%  Similarity=0.144  Sum_probs=124.7

Q ss_pred             CCccccccccchhhhhHHHHH---HhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE
Q 016507          174 VPPNRACLLSCGVSTGVGAAW---RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE  249 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~---~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~  249 (388)
                      +|+.+||.++++.+|||.+++   +....+++++|||+|+ |++|.+++|+||.+|+ +|+++.+++++.++++++|+++
T Consensus         1 l~~~~Aa~lg~aGlTA~~a~~~l~~~g~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga-~Via~~~~~~k~~~~~~lGad~   79 (177)
T d1o89a2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGASR   79 (177)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTEEE
T ss_pred             CCHHHHHHcccHHHHHHHHHHHHHHhCCCCCCCcEEEEEccccchHHHHHHHHHcCC-CeEEEecchhHHHHHHhhcccc
Confidence            578999999999999997653   2333455679999986 9999999999999999 8999999999999999999999


Q ss_pred             EEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEe
Q 016507          250 FVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGS  329 (388)
Q Consensus       250 v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~  329 (388)
                      ++|+++   .++.+   .+.+..+|.++|++|+.. +...+++++++ |+++.+|... ....+++...++.|++++.|+
T Consensus        80 vi~~~~---~~~~~---~l~~~~~~~vvD~Vgg~~-~~~~l~~l~~~-Griv~~G~~~-~~~~~~~~~~~~~k~~~i~G~  150 (177)
T d1o89a2          80 VLPRDE---FAESR---PLEKQVWAGAIDTVGDKV-LAKVLAQMNYG-GCVAACGLAG-GFTLPTTVMPFILRNVRLQGV  150 (177)
T ss_dssp             EEEGGG---SSSCC---SSCCCCEEEEEESSCHHH-HHHHHHTEEEE-EEEEECCCTT-CSCCCCCSHHHHHHCCEEEEC
T ss_pred             cccccc---HHHHH---HHHhhcCCeeEEEcchHH-HHHHHHHhccc-cceEeecccC-CccccccHHHHHHCCCeEEEE
Confidence            999876   33332   223337899999999887 99999999997 9999999753 456778888899999999998


Q ss_pred             eec
Q 016507          330 LFG  332 (388)
Q Consensus       330 ~~~  332 (388)
                      +..
T Consensus       151 ~~~  153 (177)
T d1o89a2         151 DSV  153 (177)
T ss_dssp             CSS
T ss_pred             ecc
Confidence            644

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.83  E-value=4.2e-21  Score=158.76  Aligned_cols=154  Identities=14%  Similarity=0.132  Sum_probs=120.6

Q ss_pred             hhhhhHHH---HHHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCcc
Q 016507          185 GVSTGVGA---AWRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKS  260 (388)
Q Consensus       185 ~~~ta~~~---l~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~  260 (388)
                      +.+|||.+   +.+....+++++|||+|+ |++|.+++|+||.+|+ +|+++.++++|.++++++|+++++++++    .
T Consensus         4 aGlTA~~a~~~L~~~g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad~vi~~~~----~   78 (167)
T d1tt7a2           4 AGFTAALSVHRLEQNGLSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGASEVISRED----V   78 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCSEEEEHHH----H
T ss_pred             hHHHHHHHHHHHHHhcCCCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhcccceEeccc----h
Confidence            45677644   455556778889999986 9999999999999999 9999999999999999999999998754    1


Q ss_pred             HHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeecCCCccCcH
Q 016507          261 VSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFGGLKAKSDI  340 (388)
Q Consensus       261 ~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  340 (388)
                      ..+.++...++++|+|||++|++. +..++++++++ |+++.+|.. .....+++...++.|+++++|...... ..+..
T Consensus        79 ~~~~~~~~~~~gvd~vid~vgg~~-~~~~~~~l~~~-G~iv~~G~~-~g~~~~~~~~~l~~k~~~i~G~~~~~~-~~~~~  154 (167)
T d1tt7a2          79 YDGTLKALSKQQWQGAVDPVGGKQ-LASLLSKIQYG-GSVAVSGLT-GGGEVPATVYPFILRGVSLLGIDSVYC-PMDVR  154 (167)
T ss_dssp             CSSCCCSSCCCCEEEEEESCCTHH-HHHHHTTEEEE-EEEEECCCS-SCSCEEECSHHHHTSCCEEEECCSSSC-CHHHH
T ss_pred             hchhhhcccCCCceEEEecCcHHH-HHHHHHHhccC-ceEEEeecc-CCCcccCCHHHHHHCCcEEEEEecCCC-CHHHH
Confidence            122222333349999999999988 99999999997 999999985 456778899999999999999753322 12334


Q ss_pred             HHHHHHH
Q 016507          341 PILLKRY  347 (388)
Q Consensus       341 ~~~~~~~  347 (388)
                      .++.+.+
T Consensus       155 ~~~~~~l  161 (167)
T d1tt7a2         155 AAVWERM  161 (167)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            4455544

>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: GroES-like
superfamily: GroES-like
family: Alcohol dehydrogenase-like, N-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.66  E-value=1.2e-15  Score=122.27  Aligned_cols=133  Identities=14%  Similarity=0.115  Sum_probs=99.3

Q ss_pred             cceeeeeecCC--CCC----eEEEEeecCCCCCCeEEEEEceeccCcccccccccCCCCCCCCcccccceeEEEEEecCC
Q 016507           15 IQCRAAIATAP--GEP----LVIDEVIVDPPNSHEVRVRIICTSLCHSDVTFWKMKDFPAVFPRILGHEAIGVVESVGEN   88 (388)
Q Consensus        15 ~~~ka~~~~~~--~~~----~~~~~~~~p~~~~~eVlVkv~~~~i~~~D~~~~~g~~~~~~~p~v~G~e~~G~Vv~vG~~   88 (388)
                      ++.|++++.+.  |.|    |++++.++|+|++||||||++|.++++........    .+...++..+++|+|++  |+
T Consensus         2 ~~~k~~vl~~~P~G~P~~~~f~l~e~~ip~~~~gevLvk~~~~svDp~~R~~~~~----~~~g~~~~g~~vg~Vv~--S~   75 (147)
T d1v3va1           2 VKAKSWTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKR----LKEGAVMMGQQVARVVE--SK   75 (147)
T ss_dssp             CEEEEEEESSCCCSSCCGGGEEEEEEECCCCCTTCEEEEEEEEECCTHHHHHGGG----SCTTSBCCCCEEEEEEE--ES
T ss_pred             cccEEEEEccCCCCCCcccceEEEEEECCCCCCCEEEEEEEEEeEcccccccccc----cccCCccccceEEEEEE--eC
Confidence            56788888775  444    99999999999999999999999998865432221    12233566789999998  66


Q ss_pred             CCCCCCCCEEeecCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCCCCccccccCCceecccccccceeeeEEeecCceE
Q 016507           89 VDGVVEGDVVIPHFLADCTECVGCRSKKGNLCSAFPFKISPWMPRDQTSRFKDLRGETIHHFVSVSSFSEYTVLDIAHVV  168 (388)
Q Consensus        89 v~~~~vGd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~  168 (388)
                      .++|++||+|...                                                    ++|+||.+++.+.+.
T Consensus        76 ~~~f~~GD~V~g~----------------------------------------------------~gw~ey~v~~~~~l~  103 (147)
T d1v3va1          76 NSAFPAGSIVLAQ----------------------------------------------------SGWTTHFISDGKGLE  103 (147)
T ss_dssp             CTTSCTTCEEEEC----------------------------------------------------CCSBSEEEECSSSCE
T ss_pred             CCcccCCCEEEEc----------------------------------------------------cCCEeEEEeccceee
Confidence            7899999999632                                                    389999999999999


Q ss_pred             EcCCCCC-----ccccccccchhhhh-HHHHHHhcCCCCCCEEEE
Q 016507          169 KVDPTVP-----PNRACLLSCGVSTG-VGAAWRTANVEVGSTVVI  207 (388)
Q Consensus       169 ~lP~~~~-----~~~aa~~~~~~~ta-~~~l~~~~~~~~~~~VlI  207 (388)
                      ++|++++     ....+++....+|| |..++  ...+.|++||+
T Consensus       104 kv~~~~~~~~~~~~~~~~lG~~Gmtaay~gl~--~~~k~Getvv~  146 (147)
T d1v3va1         104 KLLTEWPDKKIQYHEHVTKGFENMPAAFIEML--NGANLGKAVVT  146 (147)
T ss_dssp             ECCTTCCTTSSCCCEEEEECGGGHHHHHHHHH--TTCCSSEEEEE
T ss_pred             EccccccccccchhhhHhccccchHHHHHHhh--CCCCCCCEEEe
Confidence            9987653     33455566666764 43443  33567999986

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.9e-14  Score=100.94  Aligned_cols=73  Identities=15%  Similarity=0.191  Sum_probs=65.8

Q ss_pred             CCccccccccchhhhhHHHHHH---hcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          174 VPPNRACLLSCGVSTGVGAAWR---TANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       174 ~~~~~aa~~~~~~~ta~~~l~~---~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      +|+++|+.+++++.|||.+++.   ....+++++|||+|+ |++|.+++|+++.+|+ +|+++.+++++.++++++|+
T Consensus         1 ls~~eAa~lg~aGlTA~~al~~~~~~~~~~~~~~vlI~gasGgVG~~aiQlak~~G~-~Vi~~t~s~~k~~~~~~lGA   77 (77)
T d1o8ca2           1 LDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVGSTAVALLHKLGY-QVVAVSGRESTHEYLKSLGA   77 (77)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTE
T ss_pred             CCHHHHHHhhhHHHHHHHHHHHHHhhhhccCCCcEEEEeCCCcHHHHHHHHHHHcCC-eEEEEECCHHHHHHHHHCCC
Confidence            5789999999999999887653   455689999999987 9999999999999999 89999999999999999985

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.94  E-value=1.4e-05  Score=63.35  Aligned_cols=96  Identities=22%  Similarity=0.228  Sum_probs=73.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc--EEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~--~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      +..+|+|+|+|.+|+.|+..|+.+|+ .|.++|.+.++++.+++....  ......+   +.+.+.+.     ..|+||.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~---~~l~~~~~-----~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGSRVELLYSNS---AEIETAVA-----EADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGSEEEECCH---HHHHHHHH-----TCSEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcccceeehhhh---hhHHHhhc-----cCcEEEE
Confidence            45789999999999999999999999 999999999999988875332  2222222   34444443     6899999


Q ss_pred             ccCCH------HHHHHHHHHhhcCCceEEEEccC
Q 016507          279 CVGLA------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       279 ~~g~~------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ++-.+      ..-++.++.|+++ ..++++..-
T Consensus       102 aalipG~~aP~lIt~~mv~~Mk~G-SVIVDvaid  134 (168)
T d1pjca1         102 AVLVPGRRAPILVPASLVEQMRTG-SVIVDVAVD  134 (168)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTT-CEEEETTCT
T ss_pred             eeecCCcccCeeecHHHHhhcCCC-cEEEEeecC
Confidence            87533      1146889999997 999998764

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.89  E-value=2.2e-05  Score=63.09  Aligned_cols=103  Identities=19%  Similarity=0.235  Sum_probs=74.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcC-CC----------------CCCccHHH
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNS-KN----------------CGDKSVSQ  263 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~-~~----------------~~~~~~~~  263 (388)
                      +..+|+|+|+|.+|+.|+..|+.+|+ .|.++|.+.++++.+++++...+.-. ..                .......+
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA-~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGA-VVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCC-EEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            45789999999999999999999999 99999999999999999987554110 00                00011223


Q ss_pred             HHHhhcCCCccEEEEccCCH------HHHHHHHHHhhcCCceEEEEccC
Q 016507          264 IIIDMTDGGADYCFECVGLA------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       264 ~i~~~~~g~~dvvid~~g~~------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .+.+... ..|+||-++-.+      ..-++.++.|+++ ..+++++.-
T Consensus       107 ~l~~~l~-~aDlVI~talipG~~aP~lit~~mv~~Mk~G-SVIVDvaid  153 (183)
T d1l7da1         107 AVLKELV-KTDIAITTALIPGKPAPVLITEEMVTKMKPG-SVIIDLAVE  153 (183)
T ss_dssp             HHHHHHT-TCSEEEECCCCTTSCCCCCSCHHHHTTSCTT-CEEEETTGG
T ss_pred             HHHHHHH-hhhhheeeeecCCcccceeehHHHHHhcCCC-cEEEEEeec
Confidence            3333222 689999877433      1247899999998 999998864

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.60  E-value=0.00018  Score=56.89  Aligned_cols=80  Identities=18%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHHHcCCcEEEcCCCCCCccHHHHHHhhcCC
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      +.+...--.+.+|||+|+|.+|.++++.+...|++++.++.++.++.+ +++++|.. +.+.     .++.+.+.     
T Consensus        15 a~~~~~~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~-~~~~-----~~~~~~l~-----   83 (159)
T d1gpja2          15 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGE-AVRF-----DELVDHLA-----   83 (159)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCE-ECCG-----GGHHHHHH-----
T ss_pred             HHHHhCCcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcc-cccc-----hhHHHHhc-----
Confidence            444444557889999999999999999999899988999999987765 66677754 3333     33554443     


Q ss_pred             CccEEEEccCCH
Q 016507          272 GADYCFECVGLA  283 (388)
Q Consensus       272 ~~dvvid~~g~~  283 (388)
                      .+|+||.|++.+
T Consensus        84 ~~Divi~atss~   95 (159)
T d1gpja2          84 RSDVVVSATAAP   95 (159)
T ss_dssp             TCSEEEECCSSS
T ss_pred             cCCEEEEecCCC
Confidence            799999999865

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=97.59  E-value=0.00016  Score=57.82  Aligned_cols=75  Identities=15%  Similarity=0.172  Sum_probs=57.8

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCC
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      +.+..++.++.+|||+|+|+++.+++..++..|+++|.++.|+.++.+.+.+ ++... ++...              ..
T Consensus         8 ~l~~~~~~~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~-~~~~~--------------~~   72 (167)
T d1npya1           8 LIEKYHLNKNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAY-INSLE--------------NQ   72 (167)
T ss_dssp             HHHHTTCCTTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEE-ESCCT--------------TC
T ss_pred             HHHHcCCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhh-hhccc--------------cc
Confidence            4566777788999999999999999999999999899999999988776654 55433 22211              12


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      .+|++|+|++.
T Consensus        73 ~~DliINaTpi   83 (167)
T d1npya1          73 QADILVNVTSI   83 (167)
T ss_dssp             CCSEEEECSST
T ss_pred             chhhheecccc
Confidence            78999999763

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.59  E-value=2.1e-05  Score=65.84  Aligned_cols=112  Identities=21%  Similarity=0.226  Sum_probs=76.1

Q ss_pred             cccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEEEcCCCC
Q 016507          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNC  256 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~  256 (388)
                      .++.+...|.  +.+.+++++|++||.+|+|. |..++.+++..|. +|++++.+++-.+.++    ++|.+.+.-... 
T Consensus        60 ~is~P~~~a~--ml~~L~l~~g~~VLeIGsGs-GY~taila~l~g~-~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~g-  134 (215)
T d1jg1a_          60 TVSAPHMVAI--MLEIANLKPGMNILEVGTGS-GWNAALISEIVKT-DVYTIERIPELVEFAKRNLERAGVKNVHVILG-  134 (215)
T ss_dssp             EECCHHHHHH--HHHHHTCCTTCCEEEECCTT-SHHHHHHHHHHCS-CEEEEESCHHHHHHHHHHHHHTTCCSEEEEES-
T ss_pred             hhhhhhhHHH--HHHhhccCccceEEEecCCC-ChhHHHHHHhhCc-eeEEEeccHHHHHHHHHHHHHcCCceeEEEEC-
Confidence            4454555454  56788999999999998865 7777888888886 8999999886555444    467654432221 


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                         +..+.+  ...++||.|+-+.+........++.|+++ |+++..
T Consensus       135 ---d~~~g~--~~~~pfD~Iiv~~a~~~ip~~l~~qL~~g-GrLv~p  175 (215)
T d1jg1a_         135 ---DGSKGF--PPKAPYDVIIVTAGAPKIPEPLIEQLKIG-GKLIIP  175 (215)
T ss_dssp             ---CGGGCC--GGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             ---ccccCC--cccCcceeEEeecccccCCHHHHHhcCCC-CEEEEE
Confidence               111101  11138999988776655457889999998 999864

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.38  E-value=0.00073  Score=57.71  Aligned_cols=106  Identities=14%  Similarity=0.157  Sum_probs=70.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcEEEcCCCCCCc-cHHHHHHhhcC--CCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDK-SVSQIIIDMTD--GGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~-~~~~~i~~~~~--g~~dv  275 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++....+-.-+..+. +..+.+.+...  |+.|+
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            5788999987 9999999999999999 899999998877654 45665443322221112 22222222221  48999


Q ss_pred             EEEccCCH-------------------------HHHHHHHHHhhcCCceEEEEccCC
Q 016507          276 CFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       276 vid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      ++++.|..                         ...+.++..|+..+|+++.++...
T Consensus        84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~  140 (253)
T d1hxha_          84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVS  140 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred             EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchh
Confidence            99998842                         124456666654349999998643

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=3e-05  Score=64.94  Aligned_cols=102  Identities=22%  Similarity=0.307  Sum_probs=71.0

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHH----cCCcEEE-cCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFV-NSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~----lga~~v~-~~~~~~~~~~~~~i~  266 (388)
                      +.+.+++++|++||-+|+|. |..++.+++..|. .+|++++.+++..+.+++    .+.+.+. ...+     ..+.+ 
T Consensus        67 ~l~~l~l~~g~~VLdiG~Gt-G~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d-----~~~~~-  139 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGT-GYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGD-----GYYGV-  139 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESC-----GGGCC-
T ss_pred             HHHhhhccccceEEEecCcc-chhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCc-----hHHcc-
Confidence            56788999999999999876 8888889987763 389999999988777664    3443222 1111     11000 


Q ss_pred             hhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          267 DMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       267 ~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                       ...+.||+|+...+.....+..++.|+++ |+++..
T Consensus       140 -~~~~~fD~I~~~~~~~~~p~~l~~~LkpG-G~lv~p  174 (213)
T d1dl5a1         140 -PEFSPYDVIFVTVGVDEVPETWFTQLKEG-GRVIVP  174 (213)
T ss_dssp             -GGGCCEEEEEECSBBSCCCHHHHHHEEEE-EEEEEE
T ss_pred             -ccccchhhhhhhccHHHhHHHHHHhcCCC-cEEEEE
Confidence             11237999998776555357788999998 999763

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.24  E-value=0.0016  Score=55.64  Aligned_cols=118  Identities=16%  Similarity=0.199  Sum_probs=77.2

Q ss_pred             ccccccccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHH----c-C--C
Q 016507          176 PNRACLLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----F-G--V  247 (388)
Q Consensus       176 ~~~aa~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~----l-g--a  247 (388)
                      +...+.+..+-=.++  +...++++||++||=.|.|+ |.+++.+|+..|. .+|+.++.+++..+.+++    + +  .
T Consensus        73 ~~r~tqiiypkD~s~--Ii~~l~i~PG~~VLE~G~Gs-G~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~  149 (264)
T d1i9ga_          73 MPRGPQVIYPKDAAQ--IVHEGDIFPGARVLEAGAGS-GALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPP  149 (264)
T ss_dssp             SCSCSCCCCHHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCC
T ss_pred             ccCCccccchHHHHH--HHHHhCCCCCCEEEecCcCC-cHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCC
Confidence            344443333333333  56789999999999998766 8888889988764 389999999998888764    1 1  1


Q ss_pred             cEE-EcCCCCCCccHHHHHHhhcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEc
Q 016507          248 TEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       248 ~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +.+ +...+     ..+  ..+..+.||.||--...+ ..+..+.+.|+++ |+++.+-
T Consensus       150 ~nv~~~~~d-----~~~--~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG-G~lv~~~  200 (264)
T d1i9ga_         150 DNWRLVVSD-----LAD--SELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG-GVLMVYV  200 (264)
T ss_dssp             TTEEEECSC-----GGG--CCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE-EEEEEEE
T ss_pred             ceEEEEecc-----ccc--ccccCCCcceEEEecCCHHHHHHHHHhccCCC-CEEEEEe
Confidence            222 22222     111  011123799876555554 4478999999998 9998774

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00087  Score=56.90  Aligned_cols=77  Identities=17%  Similarity=0.239  Sum_probs=54.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE--EEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~--v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+. +++...  ..|-.+   .+-.+.+.+.. |+.|++
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d---~~~v~~~~~~~-g~iDil   80 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVRECPGIEPVCVDLGD---WEATERALGSV-GPVDLL   80 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTC-CCCCEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHh-CCceEE
Confidence            6899999987 9999999999999999 9999999988876544 344322  334433   33333332222 389999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      +++.|.
T Consensus        81 VnnAg~   86 (244)
T d1pr9a_          81 VNNAAV   86 (244)
T ss_dssp             EECCCC
T ss_pred             Eecccc
Confidence            998874

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.16  E-value=0.0037  Score=45.95  Aligned_cols=93  Identities=10%  Similarity=-0.056  Sum_probs=63.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc--hHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~--~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .|.+|||+|+|.+|..-++.+...|+ +|++++...  +...++..-..... . +.....++         .++++|+-
T Consensus        11 ~~k~vlVvG~G~va~~ka~~ll~~ga-~v~v~~~~~~~~~~~~~~~~~i~~~-~-~~~~~~dl---------~~~~lv~~   78 (113)
T d1pjqa1          11 RDRDCLIVGGGDVAERKARLLLEAGA-RLTVNALTFIPQFTVWANEGMLTLV-E-GPFDETLL---------DSCWLAIA   78 (113)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTB-EEEEEESSCCHHHHHHHTTTSCEEE-E-SSCCGGGG---------TTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCChHHHHHHhcCCceee-c-cCCCHHHh---------CCCcEEee
Confidence            57899999999999999999999999 788776543  23333333233322 2 11111221         17899999


Q ss_pred             ccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          279 CVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +.+....-....+..++. |.++.+...
T Consensus        79 at~d~~~n~~i~~~a~~~-~ilVNv~D~  105 (113)
T d1pjqa1          79 ATDDDTVNQRVSDAAESR-RIFCNVVDA  105 (113)
T ss_dssp             CCSCHHHHHHHHHHHHHT-TCEEEETTC
T ss_pred             cCCCHHHHHHHHHHHHHc-CCEEEeCCC
Confidence            999988445777788886 999887653

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=97.13  E-value=0.00015  Score=60.80  Aligned_cols=110  Identities=13%  Similarity=0.149  Sum_probs=73.0

Q ss_pred             cccchhhhhHHHHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC--c--EEEcCCCC
Q 016507          181 LLSCGVSTGVGAAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV--T--EFVNSKNC  256 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga--~--~v~~~~~~  256 (388)
                      .+..+...|.  +.+.+.+++|++||-+|+|. |..++.+++.. . +|++++.+++..+.+++.-.  .  .++..+. 
T Consensus        52 ~~~~p~~~a~--ml~~L~l~~g~~VLdIG~Gs-Gy~ta~La~l~-~-~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~-  125 (224)
T d1vbfa_          52 NTTALNLGIF--MLDELDLHKGQKVLEIGTGI-GYYTALIAEIV-D-KVVSVEINEKMYNYASKLLSYYNNIKLILGDG-  125 (224)
T ss_dssp             EECCHHHHHH--HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHS-S-EEEEEESCHHHHHHHHHHHTTCSSEEEEESCG-
T ss_pred             ceehhhhHHH--HHHHhhhcccceEEEecCCC-CHHHHHHHHHh-c-ccccccccHHHHHHHHHHHhcccccccccCch-
Confidence            3443444443  45778999999999999864 67777788764 3 89999999988887776311  1  1222111 


Q ss_pred             CCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEc
Q 016507          257 GDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       257 ~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                       ...+    .  ..++||.|+-+.+........++.|+++ |+++..-
T Consensus       126 -~~g~----~--~~~pfD~Iiv~~a~~~ip~~l~~qLk~G-GrLV~pv  165 (224)
T d1vbfa_         126 -TLGY----E--EEKPYDRVVVWATAPTLLCKPYEQLKEG-GIMILPI  165 (224)
T ss_dssp             -GGCC----G--GGCCEEEEEESSBBSSCCHHHHHTEEEE-EEEEEEE
T ss_pred             -hhcc----h--hhhhHHHHHhhcchhhhhHHHHHhcCCC-CEEEEEE
Confidence             0111    1  1237999987666555457788999998 9998753

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.13  E-value=0.003  Score=51.23  Aligned_cols=76  Identities=16%  Similarity=0.201  Sum_probs=54.9

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-c----CC-cEEEcCCCCCCccHHHHHHhhcCC
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-F----GV-TEFVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-l----ga-~~v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      --+|.+|||+|+ |++|..+++.+...|+ +|+.+++++++.+.+.+ +    .. ....|..+      .+.+.+.. +
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~------~~~~~~~~-~   91 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETAD------DASRAEAV-K   91 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCS------HHHHHHHT-T
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhccc------HHHHHHHh-c
Confidence            347899999997 9999999999999999 99999999988765443 2    22 22344433      22333333 3


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ++|++|++.|.
T Consensus        92 ~iDilin~Ag~  102 (191)
T d1luaa1          92 GAHFVFTAGAI  102 (191)
T ss_dssp             TCSEEEECCCT
T ss_pred             CcCeeeecCcc
Confidence            79999999874

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.13  E-value=0.00074  Score=57.52  Aligned_cols=105  Identities=24%  Similarity=0.264  Sum_probs=72.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcC--CCccE
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADY  275 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~--g~~dv  275 (388)
                      -.|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+++++...+ .|-.+  .++..+.+.+...  |+.|+
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G~iDi   79 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAIGGAFFQVDLED--ERERVRFVEEAAYALGRVDV   79 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHHTCEEEECCTTC--HHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCeEEEEeCCC--HHHHHHHHHHHHHhcCCCCe
Confidence            36889999987 9999999999999999 99999999998888888776543 23332  1222333332222  37999


Q ss_pred             EEEccCCH-------------------------HHHHHHHHHhhc-CCceEEEEccCC
Q 016507          276 CFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVDQ  307 (388)
Q Consensus       276 vid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~~  307 (388)
                      ++++.|..                         ...+.++..|.+ ++|+++.++...
T Consensus        80 LVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~  137 (248)
T d2d1ya1          80 LVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQ  137 (248)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGG
T ss_pred             EEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhccccccccccccccccccc
Confidence            99988741                         223455555643 238999888643

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.10  E-value=0.0018  Score=51.60  Aligned_cols=96  Identities=8%  Similarity=0.032  Sum_probs=64.4

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +.+|||+|+|-+|..+++.+...|+ +|++++++.++.+.+.+ ++...+..... .....   ..... ...|+++.+.
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~-~V~v~dr~~~~a~~l~~~~~~~~~~~~~~-~~~~~---~~~~i-~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGI-KVTVACRTLESAKKLSAGVQHSTPISLDV-NDDAA---LDAEV-AKHDLVISLI   75 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTC-EEEEEESCHHHHHHHHTTCTTEEEEECCT-TCHHH---HHHHH-TTSSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECChHHHHHHHhcccccccccccc-cchhh---hHhhh-hccceeEeec
Confidence            5789999999999999998888899 89999999999887665 43322222221 11111   11111 1678888888


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEc
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +..........++..+ ..++...
T Consensus        76 ~~~~~~~~~~~~~~~~-~~~~~~~   98 (182)
T d1e5qa1          76 PYTFHATVIKSAIRQK-KHVVTTS   98 (182)
T ss_dssp             CGGGHHHHHHHHHHHT-CEEECSS
T ss_pred             cchhhhHHHHHHHhhc-cceeecc
Confidence            7776556666666664 6665543

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=97.06  E-value=0.00041  Score=59.03  Aligned_cols=102  Identities=13%  Similarity=0.109  Sum_probs=68.5

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHH----cC-CcEEEcCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FG-VTEFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~----lg-a~~v~~~~~~~~~~~~~~i~  266 (388)
                      +...++++||++||=.|+|+ |.+++.+|++.|. .+|++++.+++..+.+++    ++ ...+--..    .++.    
T Consensus        77 Ii~~l~i~pG~rVLEiG~Gs-G~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~----~Di~----  147 (250)
T d1yb2a1          77 IIMRCGLRPGMDILEVGVGS-GNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR----SDIA----  147 (250)
T ss_dssp             ----CCCCTTCEEEEECCTT-SHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC----SCTT----
T ss_pred             HHHHcCCCCcCEEEEeeeeC-cHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE----eeee----
Confidence            34568899999999999866 7777888887653 389999999998888775    22 22221111    1121    


Q ss_pred             hhcCC-CccEEEEccCCH-HHHHHHHHHhhcCCceEEEEc
Q 016507          267 DMTDG-GADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       267 ~~~~g-~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +.... .||.|+--...+ ..+..+.+.|+++ |+++.+.
T Consensus       148 ~~~~~~~fD~V~ld~p~p~~~l~~~~~~LKpG-G~lv~~~  186 (250)
T d1yb2a1         148 DFISDQMYDAVIADIPDPWNHVQKIASMMKPG-SVATFYL  186 (250)
T ss_dssp             TCCCSCCEEEEEECCSCGGGSHHHHHHTEEEE-EEEEEEE
T ss_pred             cccccceeeeeeecCCchHHHHHHHHHhcCCC-ceEEEEe
Confidence            12223 799887545444 4478999999998 9998874

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.02  E-value=0.0012  Score=55.98  Aligned_cols=79  Identities=22%  Similarity=0.264  Sum_probs=55.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEE-EcCCCCCCccHHHHHHhhcC--CCccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF-VNSKNCGDKSVSQIIIDMTD--GGADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v-~~~~~~~~~~~~~~i~~~~~--g~~dv  275 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. ++++..+ .|-.+  .++..+.+.+...  |+.|+
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~iDi   80 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAVGAHPVVMDVAD--PASVERGFAEALAHLGRLDG   80 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTTCEEEECCTTC--HHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCeEEEEecCC--HHHHHHHHHHHHHhcCCceE
Confidence            4789999987 9999999999999999 9999999988876554 4565433 34333  1233333322222  37999


Q ss_pred             EEEccCC
Q 016507          276 CFECVGL  282 (388)
Q Consensus       276 vid~~g~  282 (388)
                      ++++.|.
T Consensus        81 lVnnAG~   87 (242)
T d1ulsa_          81 VVHYAGI   87 (242)
T ss_dssp             EEECCCC
T ss_pred             EEECCcc
Confidence            9998874

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0027  Score=50.47  Aligned_cols=78  Identities=10%  Similarity=0.083  Sum_probs=54.2

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cC---CcEEEcCCCCCCccHHHHHHhh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FG---VTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lg---a~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      |.+..-..+|.+|||+|+|+.+.+++..+...|+ +|+.+.|+.++.+.+.+ +.   ....+...+            .
T Consensus         9 l~~~~~~~~~k~vlIlGaGGaarai~~al~~~g~-~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~------------~   75 (170)
T d1nyta1           9 LERLSFIRPGLRILLIGAGGASRGVLLPLLSLDC-AVTITNRTVSRAEELAKLFAHTGSIQALSMDE------------L   75 (170)
T ss_dssp             HHHHTCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHTGGGSSEEECCSGG------------G
T ss_pred             HHHcCCCCCCCEEEEECCcHHHHHHHHHhcccce-EEEeccchHHHHHHHHHHHhhccccccccccc------------c
Confidence            4333334578999999999999999999999999 79999999988765543 32   222222111            1


Q ss_pred             cCCCccEEEEccCCH
Q 016507          269 TDGGADYCFECVGLA  283 (388)
Q Consensus       269 ~~g~~dvvid~~g~~  283 (388)
                      ....+|++|+|++..
T Consensus        76 ~~~~~dliIN~Tp~G   90 (170)
T d1nyta1          76 EGHEFDLIINATSSG   90 (170)
T ss_dssp             TTCCCSEEEECCSCG
T ss_pred             cccccceeecccccC
Confidence            112799999998754

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0014  Score=55.73  Aligned_cols=103  Identities=20%  Similarity=0.249  Sum_probs=68.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEE--EcCCCCCCccHHHHHHhhcC--CCcc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEF--VNSKNCGDKSVSQIIIDMTD--GGAD  274 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v--~~~~~~~~~~~~~~i~~~~~--g~~d  274 (388)
                      .|.++||+|+ +++|.+.++.+-..|+ +|+.+++++++.+.+.+ ++-...  .|-.+  .++..+.+.+...  |+.|
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~~~~g~iD   81 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQELPGAVFILCDVTQ--EDDVKTLVSETIRRFGRLD   81 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCTTEEEEECCTTS--HHHHHHHHHHHHHHHSCCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEccCCC--HHHHHHHHHHHHHhcCCCC
Confidence            5889999987 9999999999989999 99999999988876655 332222  23322  1233333322222  3799


Q ss_pred             EEEEccCCH--------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          275 YCFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       275 vvid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +++++.|..                          ...+.++..|+.+.|+++.++..
T Consensus        82 ilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G~Ii~isS~  139 (250)
T d1ydea1          82 CVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSL  139 (250)
T ss_dssp             EEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCH
T ss_pred             EEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCCCCcccccc
Confidence            999988731                          22344555555433899988753

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.0018  Score=54.72  Aligned_cols=77  Identities=16%  Similarity=0.189  Sum_probs=53.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE--EEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~--v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++.-.  ..|-.+   .+..+.+.+.. |+.|++
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~---~~~v~~~~~~~-g~iDil   78 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKECPGIEPVCVDLGD---WDATEKALGGI-GPVDLL   78 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHSTTCEEEECCTTC---HHHHHHHHTTC-CCCSEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhcCCCeEEEEeCCC---HHHHHHHHHHc-CCCeEE
Confidence            5889999987 9999999999999999 9999999988766544 343222  234333   33222222221 489999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      +++.|.
T Consensus        79 VnnAg~   84 (242)
T d1cyda_          79 VNNAAL   84 (242)
T ss_dssp             EECCCC
T ss_pred             EECCcc
Confidence            998874

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.91  E-value=0.0037  Score=49.95  Aligned_cols=85  Identities=18%  Similarity=0.133  Sum_probs=58.9

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEc-------CCCCCCccHHHHHHhhcCCCccE
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVN-------SKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~-------~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      .+|.|+|+|.+|++.+..+...|+ .|.++++++++.+.+++.+......       .......+..+.+.     .+|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-----~aD~   75 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVK-----DADV   75 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHT-----TCSE
T ss_pred             CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhc-----CCCE
Confidence            689999999999999999999999 9999999999988887765322111       00000022333332     7899


Q ss_pred             EEEccCCHHHHHHHHHHhh
Q 016507          276 CFECVGLASLVQEAYACCR  294 (388)
Q Consensus       276 vid~~g~~~~~~~~~~~l~  294 (388)
                      +|-++.... ....++.++
T Consensus        76 iii~v~~~~-~~~~~~~i~   93 (184)
T d1bg6a2          76 ILIVVPAIH-HASIAANIA   93 (184)
T ss_dssp             EEECSCGGG-HHHHHHHHG
T ss_pred             EEEEEchhH-HHHHHHHhh
Confidence            999998775 455544444

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.89  E-value=0.0025  Score=50.35  Aligned_cols=76  Identities=21%  Similarity=0.260  Sum_probs=56.1

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC-cEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +|.|+|.|.+|...+..++..|+ +|++.++++++.+.+++.|. +...+..+        .+     ...|+||-|+..
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~~~~~~~~~~~--------~~-----~~~DiIilavp~   67 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQLVDEAGQDLS--------LL-----QTAKIIFLCTPI   67 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTSCSEEESCGG--------GG-----TTCSEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhhccceeeeecc--------cc-----cccccccccCcH
Confidence            58899999999998888888999 99999999999998888875 44332111        11     278999998875


Q ss_pred             HHHHHHHHHHhh
Q 016507          283 ASLVQEAYACCR  294 (388)
Q Consensus       283 ~~~~~~~~~~l~  294 (388)
                      .. ....++.+.
T Consensus        68 ~~-~~~vl~~l~   78 (165)
T d2f1ka2          68 QL-ILPTLEKLI   78 (165)
T ss_dssp             HH-HHHHHHHHG
T ss_pred             hh-hhhhhhhhh
Confidence            53 444444443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=96.89  E-value=0.0033  Score=53.64  Aligned_cols=79  Identities=19%  Similarity=0.259  Sum_probs=55.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcE---EEcCCCCCCccH---HHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTE---FVNSKNCGDKSV---SQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~---v~~~~~~~~~~~---~~~i~~~~  269 (388)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.+...   ..|-.+  .++.   .+.+.+..
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~--~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLS--RTERDKLMQTVAHVF   81 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCC--HHHHHHHHHHHHHHh
Confidence            6889999987 9999999999999999 999999998775543    3344433   234333  1222   23333444


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      ++..|+++++.|.
T Consensus        82 ~g~idilinnag~   94 (258)
T d1ae1a_          82 DGKLNILVNNAGV   94 (258)
T ss_dssp             TSCCCEEEECCCC
T ss_pred             CCCcEEEeccccc
Confidence            4579999998875

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.88  E-value=0.0018  Score=54.84  Aligned_cols=80  Identities=13%  Similarity=0.166  Sum_probs=55.2

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcEE---EcCCCCCCccHHHHHHhhcC--CC
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTEF---VNSKNCGDKSVSQIIIDMTD--GG  272 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~v---~~~~~~~~~~~~~~i~~~~~--g~  272 (388)
                      -+|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++-...   .|-.+  .++..+.+.+...  |+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~   80 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELADAARYVHLDVTQ--PAQWKAAVDTAVTAFGG   80 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhCcceEEEeecCC--HHHHHHHHHHHHHHhCC
Confidence            36789999987 9999999999999999 8999999988876544 4543222   23333  1223333333222  37


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      .|+++++.|.
T Consensus        81 idilinnAG~   90 (244)
T d1nffa_          81 LHVLVNNAGI   90 (244)
T ss_dssp             CCEEEECCCC
T ss_pred             CeEEEECCcc
Confidence            9999999885

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.85  E-value=0.0051  Score=49.37  Aligned_cols=76  Identities=17%  Similarity=0.251  Sum_probs=51.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcC----C-cEEEcCCCCCCccHHHHHHhhcC
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFG----V-TEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lg----a-~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      -.+.+|||+|+|++|.+++..+...|+++++.+.+++++.+.+.    +++    . ..+.+..+  ...+.+.+     
T Consensus        16 l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----   88 (182)
T d1vi2a1          16 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLAD--QQAFAEAL-----   88 (182)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTC--HHHHHHHH-----
T ss_pred             cCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeeccc--ccchhhhh-----
Confidence            36789999999999999999888899989999999887655433    222    1 22333333  11222222     


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      ..+|++|+|++.
T Consensus        89 ~~~diiIN~Tp~  100 (182)
T d1vi2a1          89 ASADILTNGTKV  100 (182)
T ss_dssp             HTCSEEEECSST
T ss_pred             cccceeccccCC
Confidence            178999999874

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.001  Score=55.59  Aligned_cols=111  Identities=20%  Similarity=0.191  Sum_probs=71.7

Q ss_pred             cccchhhhhHHHHHHhc--CCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHH----cCC-----c
Q 016507          181 LLSCGVSTGVGAAWRTA--NVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGV-----T  248 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~--~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~----lga-----~  248 (388)
                      .++.+...|.  +.+..  .+++|++||-+|.|. |..++.+|+..|. .+|++++.+++-.+.+++    .+.     .
T Consensus        56 ~is~P~~~a~--~le~L~~~l~~g~~VLdiG~Gs-Gy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~  132 (224)
T d1i1na_          56 TISAPHMHAY--ALELLFDQLHEGAKALDVGSGS-GILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG  132 (224)
T ss_dssp             EECCHHHHHH--HHHHTTTTSCTTCEEEEETCTT-SHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS
T ss_pred             hhhhhHHHHH--HHHHHhhccCCCCeEEEecCCC-CHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCccccccc
Confidence            3443444444  34544  789999999999866 7888888887663 389999999887766543    222     1


Q ss_pred             --EEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          249 --EFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       249 --~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                        .+.. .+     .....  ...+.||+|+.+.......+..++.|+++ |+++..
T Consensus       133 ~~~~~~-gD-----~~~~~--~~~~~fD~I~~~~~~~~ip~~l~~~LkpG-G~LV~p  180 (224)
T d1i1na_         133 RVQLVV-GD-----GRMGY--AEEAPYDAIHVGAAAPVVPQALIDQLKPG-GRLILP  180 (224)
T ss_dssp             SEEEEE-SC-----GGGCC--GGGCCEEEEEECSBBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             ceEEEE-ee-----ccccc--chhhhhhhhhhhcchhhcCHHHHhhcCCC-cEEEEE
Confidence              1111 11     00000  01127999998776665467889999998 999874

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=96.84  E-value=0.0019  Score=55.00  Aligned_cols=79  Identities=23%  Similarity=0.360  Sum_probs=54.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcE---EEcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTE---FVNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~---v~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++...   ..|-.+  .++..+.+.+...  |+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   80 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELGDAARYQHLDVTI--EEDWQRVVAYAREEFGSV   80 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEcccCC--HHHHHHHHHHHHHHcCCc
Confidence            5789999987 9999999998888999 899999988876654 4465432   223332  1233333322222  379


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        81 DilVnnAg~   89 (254)
T d1hdca_          81 DGLVNNAGI   89 (254)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEecCcc
Confidence            999998874

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=96.82  E-value=0.0016  Score=56.19  Aligned_cols=78  Identities=19%  Similarity=0.204  Sum_probs=54.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcEE---EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF---VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~v---~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+ ++++....   .|-.+  .++..+.+.+...  |+.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~~~g~i   80 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHGDNVLGIVGDVRS--LEDQKQAASRCVARFGKI   80 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCCeeEEeccccc--HHHHHHHHHHHHHHhCCc
Confidence            5889999987 9999999999999999 999999998877544 44664332   23333  1223333332222  379


Q ss_pred             cEEEEccC
Q 016507          274 DYCFECVG  281 (388)
Q Consensus       274 dvvid~~g  281 (388)
                      |+++++.|
T Consensus        81 dilvnnAG   88 (276)
T d1bdba_          81 DTLIPNAG   88 (276)
T ss_dssp             CEEECCCC
T ss_pred             cccccccc
Confidence            99999887

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0018  Score=54.82  Aligned_cols=77  Identities=19%  Similarity=0.326  Sum_probs=56.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-CCcE-EEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-GVTE-FVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-ga~~-v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|+++++++++++.+.+. +... +.|...   .+..+...+.. ++.|+++
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~-~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~---~~~~~~~~~~~-~~id~lV   79 (245)
T d2ag5a1           5 DGKVIILTAAAQGIGQAAALAFAREGA-KVIATDINESKLQELEKYPGIQTRVLDVTK---KKQIDQFANEV-ERLDVLF   79 (245)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHGGGGGSTTEEEEECCTTC---HHHHHHHHHHC-SCCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhccCCceeeeeccc---ccccccccccc-ccceeEE
Confidence            5788999987 9999999999999999 999999999887766653 4322 333333   44555544433 3799999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      ++.|.
T Consensus        80 n~ag~   84 (245)
T d2ag5a1          80 NVAGF   84 (245)
T ss_dssp             ECCCC
T ss_pred             ecccc
Confidence            98774

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.77  E-value=0.0017  Score=55.37  Aligned_cols=79  Identities=25%  Similarity=0.334  Sum_probs=55.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCCcEE---EcCCCCCCccHHHHHHhhcC--CCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVTEF---VNSKNCGDKSVSQIIIDMTD--GGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga~~v---~~~~~~~~~~~~~~i~~~~~--g~~  273 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+. ++++|....   .|-.+  .++..+.+.+...  |+.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~~~~g~i   80 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIGPAACAIALDVTD--QASIDRCVAELLDRWGSI   80 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHCTTEEEEECCTTC--HHHHHHHHHHHHHHHSCC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCceEEEEeeCCC--HHHHHHHHHHHHHHhCCc
Confidence            4788999987 9999999999999999 99999998877654 455765432   23333  1233333333222  489


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        81 DilVnnAg~   89 (256)
T d1k2wa_          81 DILVNNAAL   89 (256)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEeeccc
Confidence            999998884

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=96.76  E-value=0.0013  Score=56.43  Aligned_cols=102  Identities=18%  Similarity=0.321  Sum_probs=72.9

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHH----cCC-cEE-EcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGV-TEF-VNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~----lga-~~v-~~~~~~~~~~~~~~i  265 (388)
                      +...+++++|++||=.|.|+ |.+++.+|+..+. .+|++++.+++..+.+++    +|. +.+ +...+     ..+  
T Consensus        95 Ii~~l~i~pG~~VLDiG~Gs-G~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d-----~~~--  166 (266)
T d1o54a_          95 IAMMLDVKEGDRIIDTGVGS-GAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRD-----ISE--  166 (266)
T ss_dssp             HHHHTTCCTTCEEEEECCTT-SHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCC-----GGG--
T ss_pred             HHHhhCCCCCCEEEECCCCC-CHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecc-----ccc--
Confidence            56789999999999999876 7778888888752 299999999998887764    454 222 22222     111  


Q ss_pred             HhhcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEc
Q 016507          266 IDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g  304 (388)
                       .+....+|.|+--...+ ..+..+.+.|+++ |+++.+.
T Consensus       167 -~~~~~~~D~V~~d~p~p~~~l~~~~~~LKpG-G~lv~~~  204 (266)
T d1o54a_         167 -GFDEKDVDALFLDVPDPWNYIDKCWEALKGG-GRFATVC  204 (266)
T ss_dssp             -CCSCCSEEEEEECCSCGGGTHHHHHHHEEEE-EEEEEEE
T ss_pred             -cccccceeeeEecCCCHHHHHHHHHhhcCCC-CEEEEEe
Confidence             11122788887666665 4479999999998 9998774

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=96.75  E-value=0.0044  Score=52.81  Aligned_cols=79  Identities=14%  Similarity=0.170  Sum_probs=53.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEE---EcCCCCCCccHHHHHH---hhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSVSQIII---DMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v---~~~~~~~~~~~~~~i~---~~~  269 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.|....   .|-.+  .++..+.+.   +..
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSS--RSERQELMNTVANHF   83 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCC--HHHHHHHHHHHHHHh
Confidence            5889999987 9999999998888999 8999999988765433    2343322   23322  122232222   222


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      +++.|+++++.|.
T Consensus        84 ~~~idilvnnAG~   96 (259)
T d2ae2a_          84 HGKLNILVNNAGI   96 (259)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCceEEEECCce
Confidence            3369999999884

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.0045  Score=51.86  Aligned_cols=72  Identities=22%  Similarity=0.222  Sum_probs=51.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.   ++.+...+. |-+    .... .+.+.. +++|++++
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga-~V~~~~r~~~~l---~~~~~~~~~~Dv~----~~~~-~~~~~~-g~iD~lVn   72 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGA-EVTICARNEELL---KRSGHRYVVCDLR----KDLD-LLFEKV-KEVDILVL   72 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHH---HHTCSEEEECCTT----TCHH-HHHHHS-CCCSEEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHH---HhcCCcEEEcchH----HHHH-HHHHHh-CCCcEEEe
Confidence            5789999987 9999999999999999 999999886554   445544332 222    2233 333322 47999999


Q ss_pred             ccCC
Q 016507          279 CVGL  282 (388)
Q Consensus       279 ~~g~  282 (388)
                      +.|.
T Consensus        73 nAG~   76 (234)
T d1o5ia_          73 NAGG   76 (234)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            8874

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.73  E-value=0.0029  Score=53.76  Aligned_cols=169  Identities=17%  Similarity=0.246  Sum_probs=95.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH-----HHHcCCcEE---EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-----GKRFGVTEF---VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-----~~~lga~~v---~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.     .+++|....   .|-.+  .+++.+.+.+... 
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSN--YEEVKKLLEAVKEK   80 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4789999987 9999999999999999 99999998876543     234455432   23333  1223332332222 


Q ss_pred             -CCccEEEEccCCH-------------------------HHHHHHHHHhhc-CCceEEEEccCCCCC-ccc-cCH-----
Q 016507          271 -GGADYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVDQPGS-QLS-LSS-----  316 (388)
Q Consensus       271 -g~~dvvid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~~~~~-~~~-~~~-----  316 (388)
                       |+.|+++++.|..                         ...+.++..|.. ++|+++.++...... ... ...     
T Consensus        81 ~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~~~~Y~asK  160 (251)
T d1vl8a_          81 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASK  160 (251)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccCccccchHHHH
Confidence             3799999998742                         224455666643 237999887532111 111 111     


Q ss_pred             -----------HHHHhcCcEEEEeeecCCCccC--cH---HHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcC
Q 016507          317 -----------FEVLHSGKILMGSLFGGLKAKS--DI---PILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  377 (388)
Q Consensus       317 -----------~~~~~~~~~i~g~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~  377 (388)
                                 ..+-.+++++.....+.....-  .+   ++..+.+.+. ..+.++    -.-+|+.++.-+|.+.
T Consensus       161 aal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~~~-~pl~R~----~~pedvA~~v~fL~S~  232 (251)
T d1vl8a_         161 GGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVFSDPEKLDYMLKR-IPLGRT----GVPEDLKGVAVFLASE  232 (251)
T ss_dssp             HHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHHTCHHHHHHHHHT-CTTSSC----BCGGGGHHHHHHHHSG
T ss_pred             HhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhccCCHHHHHHHHhc-CCCCCC----CCHHHHHHHHHHHhCc
Confidence                       1123457887777655432111  00   1222333222 223322    2457888888888653

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=96.72  E-value=0.0025  Score=54.67  Aligned_cols=78  Identities=24%  Similarity=0.334  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCC---cEEE--cCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGV---TEFV--NSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga---~~v~--~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++.   ...+  |-.+  .++..+.+.+...  |
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTK--DEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCC--HHHHHHHHHHHHHHcC
Confidence            6789999987 9999999999888999 8999999988776543 3332   2222  3332  2333333332222  3


Q ss_pred             CccEEEEccC
Q 016507          272 GADYCFECVG  281 (388)
Q Consensus       272 ~~dvvid~~g  281 (388)
                      ++|+++++.|
T Consensus        82 ~iD~lVnnAG   91 (268)
T d2bgka1          82 KLDIMFGNVG   91 (268)
T ss_dssp             CCCEEEECCC
T ss_pred             Ccceeccccc
Confidence            8999999887

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0021  Score=54.42  Aligned_cols=169  Identities=18%  Similarity=0.191  Sum_probs=95.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcCCcE---EEcCCCCCCccHHHHHHhhc--CCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFGVTE---FVNSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lga~~---v~~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. +++...   ..|-.+  .++..+.+.+..  .|+.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   79 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLGANGKGLMLNVTD--PASIESVLEKIRAEFGEV   79 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHGGGEEEEECCTTC--HHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhCCCCcEEEEEecC--HHHhhhhhhhhhcccCCc
Confidence            4788999987 9999999999999999 9999999988776544 455432   334333  123333333322  2489


Q ss_pred             cEEEEccCCH-------------------------HHHHHHHHHhhc-CCceEEEEccCCCCCccc-cC-H---------
Q 016507          274 DYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVDQPGSQLS-LS-S---------  316 (388)
Q Consensus       274 dvvid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~~~~~~~~-~~-~---------  316 (388)
                      |+++++.|..                         ...+.++..+.. ++|+++.++........+ .. +         
T Consensus        80 DilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~  159 (243)
T d1q7ba_          80 DILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG  159 (243)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHH
T ss_pred             ceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCCHHHHHHHHHHHH
Confidence            9999988742                         223455555532 238999998532111100 00 0         


Q ss_pred             ------HHHHhcCcEEEEeeecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcC
Q 016507          317 ------FEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  377 (388)
Q Consensus       317 ------~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~  377 (388)
                            ..+-..++++.....+....   ....++..+.+.+. +++.+    ...-+|+.++..+|.+.
T Consensus       160 lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~~~~~~~-~pl~R----~~~pedvA~~v~fL~S~  224 (243)
T d1q7ba_         160 FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQ-VPAGR----LGGAQEIANAVAFLASD  224 (243)
T ss_dssp             HHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSCHHHHHHHHTT-CTTSS----CBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHhCccCeEEEEEecceEechhhhhhhhhHHHHHHhc-CCCCC----CCCHHHHHHHHHHHhCc
Confidence                  11234567776666554321   11122233333332 23332    22467888888888754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.71  E-value=0.011  Score=44.49  Aligned_cols=75  Identities=16%  Similarity=0.227  Sum_probs=55.9

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +|+|.|.|.+|...++.+...|. .|++++.++++.+.+.. ++...+. -+.    .-.+.+.+..-..+|.++-+++.
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~~~~vi~-Gd~----~~~~~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEIDALVIN-GDC----TKIKTLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHCSSEEEE-SCT----TSHHHHHHTTTTTCSEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhhhhhhcc-Ccc----cchhhhhhcChhhhhhhcccCCc
Confidence            58999999999999999999999 99999999999887764 5655333 221    12334444422389999999888


Q ss_pred             HH
Q 016507          283 AS  284 (388)
Q Consensus       283 ~~  284 (388)
                      +.
T Consensus        76 d~   77 (132)
T d1lssa_          76 EE   77 (132)
T ss_dssp             HH
T ss_pred             HH
Confidence            75

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=96.71  E-value=0.0031  Score=53.87  Aligned_cols=79  Identities=25%  Similarity=0.373  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE---EEcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE---FVNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~---v~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.|.+.   ..|-.+  .+++.+.+.+...  
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   80 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTS--EEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHHh
Confidence            5889999987 9999999999889999 8999999988765443    345432   223333  1223333322222  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      |+.|+++++.|.
T Consensus        81 g~iDilVnnaG~   92 (260)
T d1zema1          81 GKIDFLFNNAGY   92 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCeehhhhcc
Confidence            379999998773

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.0013  Score=54.01  Aligned_cols=96  Identities=16%  Similarity=0.124  Sum_probs=62.7

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      ..+|+|+|+ |.+|..++..+...|+ +|.++.+++++.......++..+. |..+      .+.+.+... +.|+||.+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~-~V~~~~R~~~~~~~~~~~~~~~~~gD~~d------~~~l~~al~-~~d~vi~~   74 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGY-EVTVLVRDSSRLPSEGPRPAHVVVGDVLQ------AADVDKTVA-GQDAVIVL   74 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCGGGSCSSSCCCSEEEESCTTS------HHHHHHHHT-TCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEEcChhhcccccccccccccccccc------hhhHHHHhc-CCCEEEEE
Confidence            478999997 9999999998888899 999999998886554445554432 2222      122333222 78999999


Q ss_pred             cCCH----------HHHHHHHHHhhcC-CceEEEEcc
Q 016507          280 VGLA----------SLVQEAYACCRKG-WGKTIVLGV  305 (388)
Q Consensus       280 ~g~~----------~~~~~~~~~l~~~-~G~~v~~g~  305 (388)
                      +|..          .....+++.++.. -.+++.++.
T Consensus        75 ~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss  111 (205)
T d1hdoa_          75 LGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVACTS  111 (205)
T ss_dssp             CCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             eccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEEEee
Confidence            9753          1123445555543 136777754

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.0038  Score=52.70  Aligned_cols=106  Identities=15%  Similarity=0.172  Sum_probs=68.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE---EEcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE---FVNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~---v~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .|.++||+|+ +++|...+..+...|+ +|+.+++++++.+.+.    +.|...   ..|-.+  .+...+.+.+..  .
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSN--REDIYSSAKKVKAEI   82 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHc
Confidence            5889999987 9999998888888899 9999999998776443    344332   234333  123333333222  2


Q ss_pred             CCccEEEEccCCH-------------------------HHHHHHHHHhhc-CCceEEEEccCCCC
Q 016507          271 GGADYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVDQPG  309 (388)
Q Consensus       271 g~~dvvid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~~~~  309 (388)
                      |+.|+++++.|..                         ...+.++..+.. ++|+++.++.....
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~  147 (244)
T d1yb1a_          83 GDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGH  147 (244)
T ss_dssp             CCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-C
T ss_pred             CCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhc
Confidence            3799999998853                         123344554533 23789988875433

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0024  Score=54.38  Aligned_cols=79  Identities=19%  Similarity=0.258  Sum_probs=53.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcEE---EcCCCCCCccHHHHHHhhcC--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|....   .|-.+  .++..+.+.+...  
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~--~~~~~~~~~~~~~~~   86 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITS--EQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCC--HHHHHHHHHHHHHHc
Confidence            6889999987 9999999999999999 899999988776543    34454332   23222  1222222222221  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      |+.|+++++.|.
T Consensus        87 g~iDilvnnAG~   98 (255)
T d1fmca_          87 GKVDILVNNAGG   98 (255)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEeeeCCcC
Confidence            379999998874

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.60  E-value=0.00052  Score=57.39  Aligned_cols=113  Identities=16%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             cccchhhhhHHHHHHhc--CCCCCCEEEEEccch--hHHHHHHHHHHcCC---cEEEEEcCCchHHHHHHHc--------
Q 016507          181 LLSCGVSTGVGAAWRTA--NVEVGSTVVIFGLGS--IGLAVAEGARLCGA---TRIIGVDVISEKFEIGKRF--------  245 (388)
Q Consensus       181 ~~~~~~~ta~~~l~~~~--~~~~~~~VlI~Gag~--vG~~ai~la~~~g~---~~Vi~~~~~~~~~~~~~~l--------  245 (388)
                      .+..+...|.  +.+..  .++++++||.+|.|.  ....+.+++...|+   .+|+.++.+++-.+.+++.        
T Consensus        60 ~is~P~~~a~--~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~  137 (223)
T d1r18a_          60 TISAPHMHAF--ALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM  137 (223)
T ss_dssp             EECCHHHHHH--HHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             eeehhhhHHH--HHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhh
Confidence            3443444443  34444  789999999998633  33444444444443   2799999988766655431        


Q ss_pred             -CCcEE-EcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEE
Q 016507          246 -GVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       246 -ga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                       +...+ +...+     ..+...  ..++||.|+-+.+.+...+..++.|+++ |+++..
T Consensus       138 ~~~~nv~~~~~d-----~~~~~~--~~~~fD~Iiv~~a~~~~p~~l~~~Lk~g-G~lV~p  189 (223)
T d1r18a_         138 LDSGQLLIVEGD-----GRKGYP--PNAPYNAIHVGAAAPDTPTELINQLASG-GRLIVP  189 (223)
T ss_dssp             HHHTSEEEEESC-----GGGCCG--GGCSEEEEEECSCBSSCCHHHHHTEEEE-EEEEEE
T ss_pred             cCccEEEEEecc-----cccccc--cccceeeEEEEeechhchHHHHHhcCCC-cEEEEE
Confidence             22222 11111     111010  1138999987776655457888999998 999873

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=96.59  E-value=0.0041  Score=52.44  Aligned_cols=80  Identities=18%  Similarity=0.249  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcEE---EcCCCCCCccHHHHHHhhcC--CC
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEF---VNSKNCGDKSVSQIIIDMTD--GG  272 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~v---~~~~~~~~~~~~~~i~~~~~--g~  272 (388)
                      -.|.++||+|+ +++|.+.++-+...|+ +|+.+.+++++.+.+ ++++.+..   .|-.+  .++..+.+.+...  |+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~--~~~i~~~~~~i~~~~g~   79 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALEAEAIAVVADVSD--PKAVEAVFAEALEEFGR   79 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCCSSEEEEECCTTS--HHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcCCceEEEEecCCC--HHHHHHHHHHHHHHhCC
Confidence            36889999987 9999999999999999 999999998876544 45665432   23333  1233333333222  37


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+++++.+.
T Consensus        80 iDiLinnAg~   89 (241)
T d2a4ka1          80 LHGVAHFAGV   89 (241)
T ss_dssp             CCEEEEGGGG
T ss_pred             ccEecccccc
Confidence            9999998764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.52  E-value=0.0063  Score=45.97  Aligned_cols=75  Identities=15%  Similarity=0.352  Sum_probs=55.4

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +++|.|.|.+|..+++.+...|. +|++++.++++.+.++..+...++-...  ..++   +.+..-..+|.++-+++..
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~~~~~~~gd~~--~~~~---l~~a~i~~a~~vi~~~~~~   75 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASYATHAVIANAT--EENE---LLSLGIRNFEYVIVAIGAN   75 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTTCSEEEECCTT--CTTH---HHHHTGGGCSEEEECCCSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHhCCcceeeecc--cchh---hhccCCccccEEEEEcCch
Confidence            57888999999999999999999 9999999999999998888755443211  1333   3332112688888888765


Q ss_pred             H
Q 016507          284 S  284 (388)
Q Consensus       284 ~  284 (388)
                      .
T Consensus        76 ~   76 (134)
T d2hmva1          76 I   76 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=96.49  E-value=0.0052  Score=53.35  Aligned_cols=79  Identities=11%  Similarity=0.151  Sum_probs=52.5

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-----HHcCCcE-EE--cCCCCCCccHHHHHHhh--c
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG-----KRFGVTE-FV--NSKNCGDKSVSQIIIDM--T  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-----~~lga~~-v~--~~~~~~~~~~~~~i~~~--~  269 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+     .+.|... .+  |-.+  .+...+.+...  .
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~--~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRD--PDMVQNTVSELIKV  100 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccC--hHHHHHHhhhhhhh
Confidence            4789999987 9999999999989999 999999988765432     2334433 22  3222  12222222222  1


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .++.|+++++.|.
T Consensus       101 ~g~iDilvnnAg~  113 (294)
T d1w6ua_         101 AGHPNIVINNAAG  113 (294)
T ss_dssp             TCSCSEEEECCCC
T ss_pred             ccccchhhhhhhh
Confidence            2489999999874

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.48  E-value=0.006  Score=51.95  Aligned_cols=79  Identities=19%  Similarity=0.156  Sum_probs=53.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcE---EEcCCCCCCccHHH---HHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTE---FVNSKNCGDKSVSQ---IIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~---v~~~~~~~~~~~~~---~i~~~~  269 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+...   ..|-.+  .++..+   .+.+..
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASL--RPEREKLMQTVSSMF   83 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCC--HHHHHHHHHHHHHHh
Confidence            5889999987 9999999999999999 9999999987765443    223222   233333  122222   233333


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      +|..|+++++.|.
T Consensus        84 ~g~idilvnnAG~   96 (259)
T d1xq1a_          84 GGKLDILINNLGA   96 (259)
T ss_dssp             TTCCSEEEEECCC
T ss_pred             CCCcccccccccc
Confidence            4579999999885

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.014  Score=45.44  Aligned_cols=112  Identities=14%  Similarity=0.184  Sum_probs=75.6

Q ss_pred             hHHHHHHhcCC-CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHh
Q 016507          189 GVGAAWRTANV-EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       189 a~~~l~~~~~~-~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~  267 (388)
                      .+.++.+..++ -.|.+|+|.|-|-+|...++.++.+|+ +|++++.++-+.-.+.--|.. +        ..+.+.+  
T Consensus        10 ~~~~~~r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~-~V~v~e~dp~~al~A~~dG~~-v--------~~~~~a~--   77 (163)
T d1li4a1          10 LIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGA-RVIITEIDPINALQAAMEGYE-V--------TTMDEAC--   77 (163)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCE-E--------CCHHHHT--
T ss_pred             HHHHHHHHhCceecCCEEEEeccccccHHHHHHHHhCCC-eeEeeecccchhHHhhcCceE-e--------eehhhhh--
Confidence            34445565554 489999999999999999999999999 999999887553333323432 2        1233222  


Q ss_pred             hcCCCccEEEEccCCHHH-HHHHHHHhhcCCceEEEEccCCCCCccccCHHHHH
Q 016507          268 MTDGGADYCFECVGLASL-VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVL  320 (388)
Q Consensus       268 ~~~g~~dvvid~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~  320 (388)
                         ...|+++-+.|.... -.+.++.|+++ ..+...|.    .+..++...+.
T Consensus        78 ---~~adivvtaTGn~~vI~~eh~~~MKdg-aIL~N~Gh----fd~EId~~~L~  123 (163)
T d1li4a1          78 ---QEGNIFVTTTGCIDIILGRHFEQMKDD-AIVCNIGH----FDVEIDVKWLN  123 (163)
T ss_dssp             ---TTCSEEEECSSCSCSBCHHHHTTCCTT-EEEEECSS----STTSBCHHHHH
T ss_pred             ---hhccEEEecCCCccchhHHHHHhccCC-eEEEEecc----ccceecHHHHh
Confidence               157999999998543 46888899986 55555554    23345555443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=96.45  E-value=0.0036  Score=53.40  Aligned_cols=79  Identities=24%  Similarity=0.313  Sum_probs=52.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH-----HHHcCCcEE---EcCCCCCCccHHHHHHhhc--
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-----GKRFGVTEF---VNSKNCGDKSVSQIIIDMT--  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-----~~~lga~~v---~~~~~~~~~~~~~~i~~~~--  269 (388)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.     .+++|.+..   .|-.+  .++..+.+.+..  
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSN--TDIVTKTIQQIDAD   84 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCC--HHHHHHHHHHHHHH
Confidence            4788999987 9999999999999999 89999998876533     233454332   23333  122322232222  


Q ss_pred             CCCccEEEEccCC
Q 016507          270 DGGADYCFECVGL  282 (388)
Q Consensus       270 ~g~~dvvid~~g~  282 (388)
                      .|+.|+++++.|.
T Consensus        85 ~g~iDilVnnAg~   97 (260)
T d1h5qa_          85 LGPISGLIANAGV   97 (260)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             hCCCcEecccccc
Confidence            2489999998873

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=96.45  E-value=0.0042  Score=53.03  Aligned_cols=79  Identities=22%  Similarity=0.208  Sum_probs=51.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch-HH----HHHHHcCCcEE---EcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE-KF----EIGKRFGVTEF---VNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~-~~----~~~~~lga~~v---~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|++++++.+ +.    +.+++.|.+..   .|-.+  .++..+.+.+... 
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~   82 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTV--ESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTS--HHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHH
Confidence            5788999987 9999999998888999 8999988754 33    23345555432   23332  1223222332221 


Q ss_pred             -CCccEEEEccCC
Q 016507          271 -GGADYCFECVGL  282 (388)
Q Consensus       271 -g~~dvvid~~g~  282 (388)
                       |+.|+++++.|.
T Consensus        83 ~G~iDiLVnnAG~   95 (261)
T d1geea_          83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEeecccee
Confidence             379999998875

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0049  Score=52.45  Aligned_cols=79  Identities=22%  Similarity=0.373  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCC-cEE----EcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV-TEF----VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga-~~v----~~~~~~~~~~~~~~i~~~~~  270 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+. ..+    .|-.+  .++..+.+.+...
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~--~~~v~~~v~~~~~   85 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSN--EEDILSMFSAIRS   85 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTC--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCC--HHHHHHHHHHHHH
Confidence            5789999987 9999999998888999 8999999988766543    2332 122    23333  1333332222221


Q ss_pred             --CCccEEEEccCC
Q 016507          271 --GGADYCFECVGL  282 (388)
Q Consensus       271 --g~~dvvid~~g~  282 (388)
                        |+.|+++++.|.
T Consensus        86 ~~g~iD~lVnnAg~   99 (257)
T d1xg5a_          86 QHSGVDICINNAGL   99 (257)
T ss_dssp             HHCCCSEEEECCCC
T ss_pred             hcCCCCEEEecccc
Confidence              479999999875

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=96.40  E-value=0.0043  Score=52.63  Aligned_cols=79  Identities=22%  Similarity=0.270  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCC--c-EE--EcCCCCCCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGV--T-EF--VNSKNCGDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga--~-~v--~~~~~~~~~~~~~~i~~~~~--g  271 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.+ ++.  . ..  .|-.+  .++..+.+.+...  |
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSD--EDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTC--HHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCC--HHHHHHHHHHHHHHhC
Confidence            5788999987 9999999999999999 89999999887765543 332  1 12  23333  1222222222211  4


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      +.|+++++.|.
T Consensus        82 ~iDiLVnnAg~   92 (251)
T d1zk4a1          82 PVSTLVNNAGI   92 (251)
T ss_dssp             SCCEEEECCCC
T ss_pred             CceEEEecccc
Confidence            89999998875

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=96.40  E-value=0.0067  Score=51.26  Aligned_cols=79  Identities=22%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH--HHHHHHcCCcEE---EcCCCCCCccHHHHHHhhcC--CC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK--FEIGKRFGVTEF---VNSKNCGDKSVSQIIIDMTD--GG  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~--~~~~~~lga~~v---~~~~~~~~~~~~~~i~~~~~--g~  272 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+++++++++  .+.++++|....   .|-.+  .++..+.+.+...  |+
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~--~~~v~~~~~~~~~~~G~   80 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQ--PGDVEAFGKQVISTFGR   80 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHHHcCCcEEEEEeeCCC--HHHHHHHHHHHHHHcCC
Confidence            5788999987 9999999999999999 89999887643  334556665432   23333  1223333222222  37


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      .|+++++.|.
T Consensus        81 iDilVnnAG~   90 (247)
T d2ew8a1          81 CDILVNNAGI   90 (247)
T ss_dssp             CCEEEECCCC
T ss_pred             CCEEEECCCC
Confidence            9999999885

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0058  Score=51.88  Aligned_cols=102  Identities=23%  Similarity=0.203  Sum_probs=65.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc-----CCcE---EEcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF-----GVTE---FVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l-----ga~~---v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+. ++     +...   ..|-.+  .+++.+.+.+...
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~~   78 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVAD--QQQLRDTFRKVVD   78 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCC--HHHHHHHHHHHHH
Confidence            4789999987 9999999999999999 9999999988765443 22     1221   224333  1223333333222


Q ss_pred             --CCccEEEEccCCH-----------------HHHHHHHHHhhc-----CCceEEEEccC
Q 016507          271 --GGADYCFECVGLA-----------------SLVQEAYACCRK-----GWGKTIVLGVD  306 (388)
Q Consensus       271 --g~~dvvid~~g~~-----------------~~~~~~~~~l~~-----~~G~~v~~g~~  306 (388)
                        |+.|+++++.|..                 .....++..+.+     + |+++.++..
T Consensus        79 ~~G~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~-g~Iv~isS~  137 (254)
T d2gdza1          79 HFGRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEG-GIIINMSSL  137 (254)
T ss_dssp             HHSCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC-EEEEEECCG
T ss_pred             HcCCcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCC-cEEEeeccH
Confidence              3799999998853                 123344555543     3 789988764

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=96.38  E-value=0.015  Score=49.18  Aligned_cols=94  Identities=21%  Similarity=0.359  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE-EEcCCCCCCccHHHHHHhhcCCCc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-FVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~-v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      .++|++||=+|.|. |.+++.+++ .|+ +|++++.++.-.+.+++    .+... ++.      .+..+.   ...+.|
T Consensus       118 ~~~g~~VLDiGcGs-G~l~i~aa~-~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~------~d~~~~---~~~~~f  185 (254)
T d2nxca1         118 LRPGDKVLDLGTGS-GVLAIAAEK-LGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLE------GSLEAA---LPFGPF  185 (254)
T ss_dssp             CCTTCEEEEETCTT-SHHHHHHHH-TTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEE------SCHHHH---GGGCCE
T ss_pred             cCccCEEEEcccch-hHHHHHHHh-cCC-EEEEEECChHHHHHHHHHHHHcCCceeEEe------cccccc---cccccc
Confidence            67999999998764 666665554 687 89999999988777664    45432 222      222222   223489


Q ss_pred             cEEEEccCCH---HHHHHHHHHhhcCCceEEEEcc
Q 016507          274 DYCFECVGLA---SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       274 dvvid~~g~~---~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      |+|+......   ..+..+.+.|+++ |+++..|.
T Consensus       186 D~V~ani~~~~l~~l~~~~~~~LkpG-G~lilSgi  219 (254)
T d2nxca1         186 DLLVANLYAELHAALAPRYREALVPG-GRALLTGI  219 (254)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             chhhhccccccHHHHHHHHHHhcCCC-cEEEEEec
Confidence            9998765433   2245777889997 99987654

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=96.37  E-value=0.011  Score=50.15  Aligned_cols=82  Identities=15%  Similarity=0.183  Sum_probs=52.4

Q ss_pred             CCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH-------HHHHHHcCCcEE---EcCCCCCCccHHHHHH
Q 016507          198 NVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK-------FEIGKRFGVTEF---VNSKNCGDKSVSQIII  266 (388)
Q Consensus       198 ~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~-------~~~~~~lga~~v---~~~~~~~~~~~~~~i~  266 (388)
                      ..+|+.++||+|+ |++|.+.++.+-..|++.|+.+.+++.+       .+.+++.|....   .|-.+   .+-.+.+.
T Consensus         5 ~~~p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d---~~~~~~~~   81 (259)
T d2fr1a1           5 EWKPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTD---RESVRELL   81 (259)
T ss_dssp             CCCCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTC---HHHHHHHH
T ss_pred             ccCCcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccch---HHHHHHhh
Confidence            4688999999987 9999999988888898667777665322       223344565432   23333   33333333


Q ss_pred             h-hcCC-CccEEEEccCC
Q 016507          267 D-MTDG-GADYCFECVGL  282 (388)
Q Consensus       267 ~-~~~g-~~dvvid~~g~  282 (388)
                      + .... +.|.++.+.|.
T Consensus        82 ~~i~~~~~i~~vv~~ag~   99 (259)
T d2fr1a1          82 GGIGDDVPLSAVFHAAAT   99 (259)
T ss_dssp             HTSCTTSCEEEEEECCCC
T ss_pred             cccccccccccccccccc
Confidence            3 3222 78999998874

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.35  E-value=0.007  Score=51.41  Aligned_cols=78  Identities=17%  Similarity=0.235  Sum_probs=51.8

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcEE---EcCCCCCCccHHHHHHhhc--CC
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      |+.+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|....   .|-.+  .++..+.+.+..  -|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~--~~~v~~~~~~~~~~~g   78 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRS--VPEIEALVAAVVERYG   78 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTC--HHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCC--HHHHHHHHHHHHHHhC
Confidence            456688887 9999999998889999 899999998776543    33454332   23333  123333332222  24


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      +.|+++++.|.
T Consensus        79 ~iDilVnnAG~   89 (257)
T d2rhca1          79 PVDVLVNNAGR   89 (257)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            79999999874

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.32  E-value=0.011  Score=46.47  Aligned_cols=90  Identities=20%  Similarity=0.282  Sum_probs=63.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHcCC-cEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|+|+|.|.+|...+..++..|. .+|++++++++.++.+++.+. +.+....+    .       ......|+|+-|+.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~----~-------~~~~~~dlIila~p   71 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIA----K-------VEDFSPDFVMLSSP   71 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGG----G-------GGGTCCSEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhh----h-------hhccccccccccCC
Confidence            69999999999999988888774 389999999999999999875 44443221    0       11126899999988


Q ss_pred             CHH---HHHHHHHHhhcCCceEEEEcc
Q 016507          282 LAS---LVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       282 ~~~---~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ...   .+......+.++ ..++.++.
T Consensus        72 ~~~~~~vl~~l~~~~~~~-~ii~d~~s   97 (171)
T d2g5ca2          72 VRTFREIAKKLSYILSED-ATVTDQGS   97 (171)
T ss_dssp             HHHHHHHHHHHHHHSCTT-CEEEECCS
T ss_pred             chhhhhhhhhhhcccccc-cccccccc
Confidence            653   234445556664 66666665

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=96.31  E-value=0.0078  Score=51.16  Aligned_cols=78  Identities=27%  Similarity=0.312  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----c--CCcE---EEcCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----F--GVTE---FVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----l--ga~~---v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .|.++||+|+ +++|.+.++.+-..|+ +|+.+++++++.+.+..    .  +...   ..|-.+  .++..+.+.+...
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~~   79 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSD--EAQVEAYVTATTE   79 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCC--HHHHHHHHHHHHH
Confidence            4788999987 9999999999999999 99999999887654432    2  2222   124333  1233333322222


Q ss_pred             --CCccEEEEccC
Q 016507          271 --GGADYCFECVG  281 (388)
Q Consensus       271 --g~~dvvid~~g  281 (388)
                        |+.|+++++.|
T Consensus        80 ~~G~iDiLVnnAG   92 (258)
T d1iy8a_          80 RFGRIDGFFNNAG   92 (258)
T ss_dssp             HHSCCSEEEECCC
T ss_pred             HhCCCCEEEECCc
Confidence              37999999887

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.30  E-value=0.0068  Score=51.43  Aligned_cols=81  Identities=17%  Similarity=0.317  Sum_probs=51.2

Q ss_pred             CCCEEEEEcc-c--hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEEEcCCCCCCccHHHHHHhhc--CC
Q 016507          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEFVNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g--~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      +|.++||+|+ |  ++|.+.++.+...|+ +|+..+++++..+.++    ..+....+..+-.+.++..+.+.+..  .|
T Consensus         7 ~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           7 SGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             TTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            5789999997 5  699999988888899 8998888876544433    23333333322211222322222221  14


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      +.|+++++.+.
T Consensus        86 ~iDilVnnag~   96 (256)
T d1ulua_          86 GLDYLVHAIAF   96 (256)
T ss_dssp             SEEEEEECCCC
T ss_pred             CceEEEecccc
Confidence            79999998864

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.008  Score=52.27  Aligned_cols=81  Identities=16%  Similarity=0.258  Sum_probs=53.6

Q ss_pred             CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-Hc--------CCcEE---EcCCCCCCccHHHHH
Q 016507          199 VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RF--------GVTEF---VNSKNCGDKSVSQII  265 (388)
Q Consensus       199 ~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~l--------ga~~v---~~~~~~~~~~~~~~i  265 (388)
                      .-+|.++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+. ++        +....   .|-.+  .++..+.+
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~   85 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRN--EEEVNNLV   85 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTC--HHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCC--HHHHHHHH
Confidence            346889999987 9999999999888999 9999999987765332 22        22221   23333  12333333


Q ss_pred             HhhcC--CCccEEEEccCC
Q 016507          266 IDMTD--GGADYCFECVGL  282 (388)
Q Consensus       266 ~~~~~--g~~dvvid~~g~  282 (388)
                      .+...  |+.|+++++.|.
T Consensus        86 ~~~~~~~G~iDiLVnnAg~  104 (297)
T d1yxma1          86 KSTLDTFGKINFLVNNGGG  104 (297)
T ss_dssp             HHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHhCCeEEEEeeccc
Confidence            33222  379999998874

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=96.28  E-value=0.014  Score=46.71  Aligned_cols=101  Identities=14%  Similarity=0.127  Sum_probs=65.9

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC-Cc-----------------EEEcCCC
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VT-----------------EFVNSKN  255 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg-a~-----------------~v~~~~~  255 (388)
                      +....+++|.+||.+|.|. |..++.+|+. |+ +|++++.|+.-++.+++.. ..                 ..+..+-
T Consensus        13 ~~~l~~~~~~rvLd~GCG~-G~~a~~la~~-G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~   89 (201)
T d1pjza_          13 WSSLNVVPGARVLVPLCGK-SQDMSWLSGQ-GY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF   89 (201)
T ss_dssp             HHHHCCCTTCEEEETTTCC-SHHHHHHHHH-CC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred             HHHcCCCCCCEEEEecCcC-CHHHHHHHHc-CC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence            4566799999999998755 6777888874 88 9999999999998887631 10                 0111010


Q ss_pred             CCCccHHHHHHhhcCCCccEEEEccCC--------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          256 CGDKSVSQIIIDMTDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g~~dvvid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                         .++....    ...+|+|++....        ...+..+.+.|+++ |.++....
T Consensus        90 ---~~l~~~~----~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkpg-G~l~l~~~  139 (201)
T d1pjza_          90 ---FALTARD----IGHCAAFYDRAAMIALPADMRERYVQHLEALMPQA-CSGLLITL  139 (201)
T ss_dssp             ---SSSTHHH----HHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSE-EEEEEEEE
T ss_pred             ---ccccccc----ccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCC-cEEEEEEc
Confidence               1111111    0178999874431        23367888999997 98765543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0041  Score=43.90  Aligned_cols=81  Identities=22%  Similarity=0.263  Sum_probs=50.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch--HHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~--~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      +|.+|+|+|.|..|+++++++...|+ +|++.+..+.  ..+.++. +....+....   .   ..+.     .+|.|+-
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~-~v~~~D~~~~~~~~~~~~~-~~~~~~~~~~---~---~~~~-----~~d~vi~   70 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGV-TPRVMDTRMTPPGLDKLPE-AVERHTGSLN---D---EWLM-----AADLIVA   70 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTC-CCEEEESSSSCTTGGGSCT-TSCEEESBCC---H---HHHH-----HCSEEEE
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCC-EEEEeeCCcCchhHHHHhh-ccceeecccc---h---hhhc-----cCCEEEE
Confidence            46789999999999999999999999 9999987543  2222222 2333333222   1   1111     6788887


Q ss_pred             ccCCHHHHHHHHHHhhc
Q 016507          279 CVGLASLVQEAYACCRK  295 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~~  295 (388)
                      .-|.+. -...++....
T Consensus        71 SPGi~~-~~~~~~~a~~   86 (93)
T d2jfga1          71 SPGIAL-AHPSLSAAAD   86 (93)
T ss_dssp             CTTSCT-TSHHHHHHHH
T ss_pred             CCCCCC-CCHHHHHHHH
Confidence            776554 2333343333

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.27  E-value=0.0058  Score=52.52  Aligned_cols=78  Identities=23%  Similarity=0.270  Sum_probs=52.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCC--cE----EEcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGV--TE----FVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga--~~----v~~~~~~~~~~~~~~i~~~~  269 (388)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+.  ..    ..|-.+  .++..+.+.+..
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~--~~~v~~~~~~~~   79 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTE--ASGQDDIINTTL   79 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCC--HHHHHHHHHHHH
Confidence            5788999987 9999999999989999 9999999988765443    2332  11    223333  122333333222


Q ss_pred             C--CCccEEEEccC
Q 016507          270 D--GGADYCFECVG  281 (388)
Q Consensus       270 ~--g~~dvvid~~g  281 (388)
                      .  |+.|+++++.|
T Consensus        80 ~~~G~iDilVnnAG   93 (274)
T d1xhla_          80 AKFGKIDILVNNAG   93 (274)
T ss_dssp             HHHSCCCEEEECCC
T ss_pred             HHcCCceEEEeecc
Confidence            2  37999999877

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0068  Score=51.86  Aligned_cols=43  Identities=21%  Similarity=0.210  Sum_probs=37.4

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~  243 (388)
                      -+|.++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+.
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~   55 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVV   55 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            46899999997 9999999998888999 9999999998876553

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.18  E-value=0.0085  Score=50.97  Aligned_cols=104  Identities=21%  Similarity=0.310  Sum_probs=64.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-hHHHHH-----HHcCCcEEE---cCCCCCCccHHHHHHhhcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFEIG-----KRFGVTEFV---NSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~~~-----~~lga~~v~---~~~~~~~~~~~~~i~~~~~  270 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++ ++.+.+     ...|.....   |-.+  .++..+.+.+...
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~   79 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSK--GEAVRGLVDNAVR   79 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTS--HHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCC--HHHHHHHHHHHHH
Confidence            5788999987 9999999998889999 999998864 333322     234544332   3222  1223332222222


Q ss_pred             --CCccEEEEccCCH-------------------------HHHHHHHHHhhc-CCceEEEEccCC
Q 016507          271 --GGADYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVDQ  307 (388)
Q Consensus       271 --g~~dvvid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~~  307 (388)
                        |+.|+++++.|..                         ...+.++..+.. ++|+++.++...
T Consensus        80 ~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~  144 (260)
T d1x1ta1          80 QMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAH  144 (260)
T ss_dssp             HHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGG
T ss_pred             HhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeeccccc
Confidence              4799999998742                         123344555443 238999888643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.16  E-value=0.0081  Score=50.82  Aligned_cols=169  Identities=12%  Similarity=0.089  Sum_probs=93.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEE---EcCCCCCCccHHHHHHhhc--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v---~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      .+..+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.|....   .|-.+  .+++.+.+.+..  .
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSK--KEEISEVINKILTEH   85 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTC--HHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCC--HHHHHHHHHHHHHhc
Confidence            4678889987 9999999998888999 9999999987765433    3454322   23333  122333332221  2


Q ss_pred             CCccEEEEccCCH-------------------------HHHHHHHHHhh-cCCceEEEEccCCCCCccc-c-CH------
Q 016507          271 GGADYCFECVGLA-------------------------SLVQEAYACCR-KGWGKTIVLGVDQPGSQLS-L-SS------  316 (388)
Q Consensus       271 g~~dvvid~~g~~-------------------------~~~~~~~~~l~-~~~G~~v~~g~~~~~~~~~-~-~~------  316 (388)
                      |+.|+++++.|..                         ...+.++..+. .++|++|.++...+....+ . .+      
T Consensus        86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaa  165 (251)
T d2c07a1          86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAG  165 (251)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHH
T ss_pred             CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCCHHHHHHHHH
Confidence            4899999988742                         11233344332 2239999998532111110 0 00      


Q ss_pred             ---------HHHHhcCcEEEEeeecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHhcC
Q 016507          317 ---------FEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLIKG  377 (388)
Q Consensus       317 ---------~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~~~  377 (388)
                               ..+-.+++++.....+....   ....++..+.+.+. .++.+    .-.-+|+.++..+|.+.
T Consensus       166 l~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~~~~~~~~~~~~~-~pl~R----~~~pedvA~~v~fL~S~  233 (251)
T d2c07a1         166 VIGFTKSLAKELASRNITVNAIAPGFISSDMTDKISEQIKKNIISN-IPAGR----MGTPEEVANLACFLSSD  233 (251)
T ss_dssp             HHHHHHHHHHHHGGGTEEEEEEEECSBCC-----CCHHHHHHHHTT-CTTSS----CBCHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHHHhhhhCeEEEEEccCCEecccccccCHHHHHHHHhc-CCCCC----CcCHHHHHHHHHHHhCc
Confidence                     11234567776665543321   12234444554443 23332    22457888888887754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.15  E-value=0.025  Score=44.01  Aligned_cols=87  Identities=17%  Similarity=0.156  Sum_probs=62.4

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      +|-|+|.|.+|...++-+...|+ +|++.++++++.+.+++.++...        ....+.+.     ..|+||-|+..+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~~--------~~~~e~~~-----~~d~ii~~v~~~   67 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGAETA--------STAKAIAE-----QCDVIITMLPNS   67 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC--------SSHHHHHH-----HCSEEEECCSSH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhhhhc--------ccHHHHHh-----CCCeEEEEcCCH
Confidence            58899999999998887777899 99999999999999888876421        12222222     579999999877


Q ss_pred             HHHHHHH-------HHhhcCCceEEEEcc
Q 016507          284 SLVQEAY-------ACCRKGWGKTIVLGV  305 (388)
Q Consensus       284 ~~~~~~~-------~~l~~~~G~~v~~g~  305 (388)
                      ..+...+       ..+.++ ..++.++.
T Consensus        68 ~~v~~v~~~~~~~~~~~~~g-~iiid~sT   95 (161)
T d1vpda2          68 PHVKEVALGENGIIEGAKPG-TVLIDMSS   95 (161)
T ss_dssp             HHHHHHHHSTTCHHHHCCTT-CEEEECSC
T ss_pred             HHHHHHHhCCcchhhccCCC-CEEEECCC
Confidence            6555543       344454 55566554

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.13  E-value=0.0062  Score=52.25  Aligned_cols=79  Identities=25%  Similarity=0.251  Sum_probs=52.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCC--c----EEEcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGV--T----EFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga--~----~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++++.+.+    .+.  .    ...|-.+  .++..+.+.+..
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~~~   80 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTT--EDGQDQIINSTL   80 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCC--HHHHHHHHHHHH
Confidence            4788999987 9999999999999999 99999999887665432    332  1    1223333  122323233222


Q ss_pred             C--CCccEEEEccCC
Q 016507          270 D--GGADYCFECVGL  282 (388)
Q Consensus       270 ~--g~~dvvid~~g~  282 (388)
                      .  |+.|+++++.|.
T Consensus        81 ~~~g~iDilvnnAG~   95 (272)
T d1xkqa_          81 KQFGKIDVLVNNAGA   95 (272)
T ss_dssp             HHHSCCCEEEECCCC
T ss_pred             HHhCCceEEEeCCcc
Confidence            2  379999998764

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.12  E-value=0.0011  Score=55.96  Aligned_cols=99  Identities=15%  Similarity=0.177  Sum_probs=62.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC---CccHHHHHHhhcCC-CccE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG---DKSVSQIIIDMTDG-GADY  275 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~---~~~~~~~i~~~~~g-~~dv  275 (388)
                      +|.+|||+|+ |++|.+.++.+...|+ +|+.+++.+.....     ....+......   ...+...+.+..+. ++|+
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~-~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~   74 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNW-WVASIDVVENEEAS-----ASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   74 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSCCTTSS-----EEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCcccccc-----ccceeecccCcHHHHHHHHHHHHHHhCCCCceE
Confidence            4789999987 9999999999999999 99998876543211     11111111100   01123333333333 7999


Q ss_pred             EEEccCCH--------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          276 CFECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       276 vid~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ++++.|.-                          .....++..++++ |+++.++..
T Consensus        75 lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-G~Iv~isS~  130 (236)
T d1dhra_          75 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEG-GLLTLAGAK  130 (236)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred             EEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccc-cceeEEccH
Confidence            99988731                          1233455666776 999999864

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.08  E-value=0.0053  Score=52.16  Aligned_cols=104  Identities=11%  Similarity=0.039  Sum_probs=61.9

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE----EEcCCCCCCccHHHHHHhhcC-
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE----FVNSKNCGDKSVSQIIIDMTD-  270 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~----v~~~~~~~~~~~~~~i~~~~~-  270 (388)
                      .|.+|||+|+ +++|.+.+..+-..|+ +|+++.++.++.+.+.+    .+-..    ..|-.. +...+.+.+.+... 
T Consensus         4 ~gK~vlITGgs~GIG~~~A~~la~~G~-~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~~~~~   81 (254)
T d1sbya1           4 TNKNVIFVAALGGIGLDTSRELVKRNL-KNFVILDRVENPTALAELKAINPKVNITFHTYDVTV-PVAESKKLLKKIFDQ   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTCC-SEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTS-CHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCC-CHHHHHHHHHHHHHH
Confidence            5889999987 9999999998888899 77777665554443332    22111    222221 11223333333322 


Q ss_pred             -CCccEEEEccCCH-----------------HHHHHHHHHhh-----cCCceEEEEccCC
Q 016507          271 -GGADYCFECVGLA-----------------SLVQEAYACCR-----KGWGKTIVLGVDQ  307 (388)
Q Consensus       271 -g~~dvvid~~g~~-----------------~~~~~~~~~l~-----~~~G~~v~~g~~~  307 (388)
                       |+.|+++++.|..                 ......+..+.     ++ |+++.++...
T Consensus        82 ~g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~-g~Ii~isS~~  140 (254)
T d1sbya1          82 LKTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPG-GIIANICSVT  140 (254)
T ss_dssp             HSCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCC-EEEEEECCGG
T ss_pred             cCCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCC-ceEEEEechh
Confidence             3799999999853                 12344445553     24 8888887643

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.08  E-value=0.0076  Score=51.25  Aligned_cols=102  Identities=22%  Similarity=0.342  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEc-CCchHHH----HHHHcCCcEE-E--cCCCCCCccHHHHHHhhcC
Q 016507          200 EVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD-VISEKFE----IGKRFGVTEF-V--NSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       200 ~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~-~~~~~~~----~~~~lga~~v-~--~~~~~~~~~~~~~i~~~~~  270 (388)
                      -.|+++||+|+ +++|.+.++.+...|+ +|+.+. ++++..+    .+++.|.+.. +  |-.+  .++..+.+.+...
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~--~~~v~~~~~~~~~   80 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISK--PSEVVALFDKAVS   80 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCC--HHHHHHHHHHHHH
Confidence            36889999987 9999999999999999 777754 4444433    3345565432 2  3222  2233333333222


Q ss_pred             --CCccEEEEccCCH-------------------------HHHHHHHHHhhcCCceEEEEcc
Q 016507          271 --GGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       271 --g~~dvvid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                        |+.|+++++.|..                         ...+.++..++.+ |.++.+..
T Consensus        81 ~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~~iii~s  141 (259)
T d1ja9a_          81 HFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSS  141 (259)
T ss_dssp             HHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             HcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcC-Cccccccc
Confidence              3799999988852                         2355667777776 88877754

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.0014  Score=55.47  Aligned_cols=101  Identities=23%  Similarity=0.291  Sum_probs=68.9

Q ss_pred             HHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE---EEcCCCCCCccHHHH
Q 016507          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE---FVNSKNCGDKSVSQI  264 (388)
Q Consensus       192 ~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~---v~~~~~~~~~~~~~~  264 (388)
                      .+...+++.+|++||=+|.|. |..+..+++..|+ +|++++.++...+.+++    .|...   +.. .+     ..+ 
T Consensus        24 ~l~~~~~l~pg~~VLDiGCG~-G~~~~~la~~~~~-~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~-~d-----~~~-   94 (245)
T d1nkva_          24 TLGRVLRMKPGTRILDLGSGS-GEMLCTWARDHGI-TGTGIDMSSLFTAQAKRRAEELGVSERVHFIH-ND-----AAG-   94 (245)
T ss_dssp             HHHHHTCCCTTCEEEEETCTT-CHHHHHHHHHTCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEE-SC-----CTT-
T ss_pred             HHHHHcCCCCCCEEEEEcCCC-CHHHHHHHHhcCC-EEEEEecccchhhHHHHHHHHhhccccchhhh-hH-----Hhh-
Confidence            366788999999999998654 5566678888898 99999999988776655    35421   221 11     111 


Q ss_pred             HHhhcCCCccEEEEcc------CCHHHHHHHHHHhhcCCceEEEEc
Q 016507          265 IIDMTDGGADYCFECV------GLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       265 i~~~~~g~~dvvid~~------g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +  ...+.||+|+..-      .-...+..+.+.|+++ |+++...
T Consensus        95 ~--~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPG-G~l~i~~  137 (245)
T d1nkva_          95 Y--VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPG-GIMLIGE  137 (245)
T ss_dssp             C--CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEE-EEEEEEE
T ss_pred             c--cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcC-cEEEEEe
Confidence            0  1223899997532      2245578899999997 9987653

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.05  E-value=0.0093  Score=51.61  Aligned_cols=103  Identities=15%  Similarity=0.213  Sum_probs=69.7

Q ss_pred             HHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHh
Q 016507          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       192 ~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~  267 (388)
                      .+.+.+++++|++||=+|.|- |..+..+|+..|+ +|++++.++++.++++.    .|....+....   .+.     .
T Consensus        52 ~~~~~l~l~~G~~VLDiGCG~-G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~---~d~-----~  121 (291)
T d1kpia_          52 LALDKLNLEPGMTLLDIGCGW-GSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI---QGW-----E  121 (291)
T ss_dssp             HHHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEE---CCG-----G
T ss_pred             HHHHhcCCCCCCEEEEecCcc-hHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhh---hcc-----c
Confidence            366888999999999998654 4457788888899 99999999988766553    45432211111   111     1


Q ss_pred             hcCCCccEEEE-----ccCC----------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          268 MTDGGADYCFE-----CVGL----------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       268 ~~~g~~dvvid-----~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ...+.||.|+.     -++.          ...++.+.+.|+|+ |+++.-..
T Consensus       122 ~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkpg-G~~~l~~i  173 (291)
T d1kpia_         122 EFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDD-GRMLLHTI  173 (291)
T ss_dssp             GCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTT-CEEEEEEE
T ss_pred             ccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCC-CceEEEEE
Confidence            22348998864     2222          23478899999998 99986544

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.04  E-value=0.0072  Score=52.19  Aligned_cols=99  Identities=13%  Similarity=0.118  Sum_probs=68.8

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CC-cEE-EcCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GV-TEF-VNSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga-~~v-~~~~~~~~~~~~~~i~  266 (388)
                      +.+.+++++|++||=+|.|- |..++.+|+..|+ +|++++.++++.+++++.    |. +.+ +...     ++    +
T Consensus        54 ~~~~l~l~~G~~VLDiGCG~-G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~-----d~----~  122 (285)
T d1kpga_          54 ALGKLGLQPGMTLLDVGCGW-GATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLA-----GW----E  122 (285)
T ss_dssp             HHTTTTCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEES-----CG----G
T ss_pred             HHHHcCCCCCCEEEEecCcc-hHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHh-----hh----h
Confidence            56788999999999998754 6777888888899 999999999988887653    22 111 1111     11    1


Q ss_pred             hhcCCCccEEEE-----ccCCH---HHHHHHHHHhhcCCceEEEEc
Q 016507          267 DMTDGGADYCFE-----CVGLA---SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       267 ~~~~g~~dvvid-----~~g~~---~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      . ..+.||.|+.     .++..   ..+..+.+.|+++ |+++...
T Consensus       123 ~-~~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkpg-G~~~l~~  166 (285)
T d1kpga_         123 Q-FDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPAD-GVMLLHT  166 (285)
T ss_dssp             G-CCCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             c-ccccccceeeehhhhhcCchhHHHHHHHHHhhcCCC-CcEEEEE
Confidence            1 2347888754     33322   3477899999998 9988643

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.03  E-value=0.0081  Score=50.15  Aligned_cols=93  Identities=18%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      .+++.+||=+|.| .|..+..+++ .|+ +|++++.++...+.+++.+....+..+.   .++     .+..+.||+|+.
T Consensus        40 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~~---~~l-----~~~~~~fD~ii~  108 (246)
T d2avna1          40 LKNPCRVLDLGGG-TGKWSLFLQE-RGF-EVVLVDPSKEMLEVAREKGVKNVVEAKA---EDL-----PFPSGAFEAVLA  108 (246)
T ss_dssp             CCSCCEEEEETCT-TCHHHHHHHT-TTC-EEEEEESCHHHHHHHHHHTCSCEEECCT---TSC-----CSCTTCEEEEEE
T ss_pred             cCCCCEEEEECCC-Cchhcccccc-cce-EEEEeecccccccccccccccccccccc---ccc-----ccccccccceee
Confidence            5678899988887 4888888876 488 8999999999999999877766555333   222     122348999986


Q ss_pred             ccC------CH-HHHHHHHHHhhcCCceEEEE
Q 016507          279 CVG------LA-SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       279 ~~g------~~-~~~~~~~~~l~~~~G~~v~~  303 (388)
                      ...      .. ..+..+.+.|++| |.++..
T Consensus       109 ~~~~~~~~~d~~~~l~~i~r~Lk~g-G~~ii~  139 (246)
T d2avna1         109 LGDVLSYVENKDKAFSEIRRVLVPD-GLLIAT  139 (246)
T ss_dssp             CSSHHHHCSCHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ecchhhhhhhHHHHHHHHHhhcCcC-cEEEEE
Confidence            433      21 3367888999997 887754

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.03  E-value=0.01  Score=50.80  Aligned_cols=104  Identities=22%  Similarity=0.261  Sum_probs=66.7

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc-hHHH----HHHHcCCcEEEcCCCC-CCccHHHHHHhhcC--C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS-EKFE----IGKRFGVTEFVNSKNC-GDKSVSQIIIDMTD--G  271 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~-~~~~----~~~~lga~~v~~~~~~-~~~~~~~~i~~~~~--g  271 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|+.++++. +..+    .+++.+.+.....-+. +.+++.+.+.+...  |
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            4789999987 9999999999999999 898887654 3333    3344565443221111 12333433333322  3


Q ss_pred             CccEEEEccCCH-------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          272 GADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       272 ~~dvvid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +.|+++.+.+..                         ...+..+..|..+ |+++.++..
T Consensus        96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~-g~~i~i~s~  154 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIG-GRLILMGSI  154 (272)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTT-CEEEEECCG
T ss_pred             CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccc-ccccccccc
Confidence            799999988742                         2245666777776 888888754

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0021  Score=56.72  Aligned_cols=105  Identities=17%  Similarity=0.178  Sum_probs=67.8

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCc-EEEEEcCCchHHHHHHH----cC-----------CcEE-EcCCC
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKR----FG-----------VTEF-VNSKN  255 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~-~Vi~~~~~~~~~~~~~~----lg-----------a~~v-~~~~~  255 (388)
                      +...++++||++||=.|.|+ |.+++.+|+..|.+ +|+.++.+++..+.+++    ++           .+.+ +...+
T Consensus        90 Il~~l~i~pG~rVLE~GtGs-G~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~d  168 (324)
T d2b25a1          90 ILSMMDINPGDTVLEAGSGS-GGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  168 (324)
T ss_dssp             HHHHHTCCTTCEEEEECCTT-SHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHHhCCCCCCEEEEecccc-cHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecc
Confidence            55678999999999998876 88888999987643 89999999988877664    11           1111 11111


Q ss_pred             CCCccHHHHHHhhcCCCccEEEEccCCH-HHHHHHHHHhhcCCceEEEEc
Q 016507          256 CGDKSVSQIIIDMTDGGADYCFECVGLA-SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g~~dvvid~~g~~-~~~~~~~~~l~~~~G~~v~~g  304 (388)
                        ..++...   +..+.||.||=-...+ ..+..+.+.|+++ |+++.+-
T Consensus       169 --i~~~~~~---~~~~~fD~V~LD~p~P~~~l~~~~~~LKpG-G~lv~~~  212 (324)
T d2b25a1         169 --ISGATED---IKSLTFDAVALDMLNPHVTLPVFYPHLKHG-GVCAVYV  212 (324)
T ss_dssp             --TTCCC----------EEEEEECSSSTTTTHHHHGGGEEEE-EEEEEEE
T ss_pred             --hhhcccc---cCCCCcceEeecCcCHHHHHHHHHHhccCC-CEEEEEe
Confidence              0111111   1122688776433333 3488999999998 9998874

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=96.02  E-value=0.012  Score=48.91  Aligned_cols=102  Identities=21%  Similarity=0.255  Sum_probs=68.8

Q ss_pred             HHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHH
Q 016507          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQII  265 (388)
Q Consensus       192 ~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i  265 (388)
                      .+...+.+++|++||=+|.|. |..+..+++. +. +|++++.++...+.+++    .+.+.  ++..+.   .++    
T Consensus         7 ~l~~~~~~~~~~rILDiGcGt-G~~~~~la~~-~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~---~~~----   76 (234)
T d1xxla_           7 LMIKTAECRAEHRVLDIGAGA-GHTALAFSPY-VQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTA---ESL----   76 (234)
T ss_dssp             HHHHHHTCCTTCEEEEESCTT-SHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBT---TBC----
T ss_pred             HHHHHhCCCCCCEEEEeCCcC-cHHHHHHHHh-CC-eEEEEeCChhhhhhhhhhhccccccccccccccc---ccc----
Confidence            467889999999999998765 7777777775 56 89999999987776654    33321  221111   111    


Q ss_pred             HhhcCCCccEEEEccCC------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          266 IDMTDGGADYCFECVGL------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       .+.++.||+|+.+-..      ...+..+.+.|+++ |.++..-.
T Consensus        77 -~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~~~~~~~  120 (234)
T d1xxla_          77 -PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQD-GRFLLVDH  120 (234)
T ss_dssp             -CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -cccccccceeeeeceeecccCHHHHHHHHHHeeCCC-cEEEEEEc
Confidence             1223479999864332      24478999999997 98877543

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0081  Score=51.54  Aligned_cols=99  Identities=19%  Similarity=0.295  Sum_probs=61.3

Q ss_pred             CCEE-EEEcc-chhHHHHHH-HHHHcCCcEEEEEcCCchHHHHHH----HcCCc-EE--EcCCCCCCcc---HHHHHHhh
Q 016507          202 GSTV-VIFGL-GSIGLAVAE-GARLCGATRIIGVDVISEKFEIGK----RFGVT-EF--VNSKNCGDKS---VSQIIIDM  268 (388)
Q Consensus       202 ~~~V-lI~Ga-g~vG~~ai~-la~~~g~~~Vi~~~~~~~~~~~~~----~lga~-~v--~~~~~~~~~~---~~~~i~~~  268 (388)
                      |.+| ||+|+ +++|+++++ |++..|+ +|+.+++++++.+.+.    +.+.. .+  .|-.+  .+.   +.+.+.+.
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~--~~sv~~~~~~~~~~   78 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDD--LQSIRALRDFLRKE   78 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTC--HHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCC--HHHHHHHHHHHHHh
Confidence            5677 66687 999998776 5566688 9999999998865433    23332 12  23333  122   22333322


Q ss_pred             cCCCccEEEEccCCH-------------------------HHHHHHHHHhhcCCceEEEEcc
Q 016507          269 TDGGADYCFECVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       269 ~~g~~dvvid~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      . |+.|++|+..|..                         ...+.++..|++. |+++.++.
T Consensus        79 ~-g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~-g~ivnisS  138 (275)
T d1wmaa1          79 Y-GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQ-GRVVNVSS  138 (275)
T ss_dssp             H-SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEE-EEEEEECC
T ss_pred             c-CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccccc
Confidence            2 3799999998842                         1233445556775 99988875

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.97  E-value=0.0045  Score=52.41  Aligned_cols=81  Identities=16%  Similarity=0.121  Sum_probs=52.7

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCc-EEEEEcCCchHHHHHHHcCC-c-EE--EcCCCC-CCccHHHHHHhhcCC-Cc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGV-T-EF--VNSKNC-GDKSVSQIIIDMTDG-GA  273 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~-~Vi~~~~~~~~~~~~~~lga-~-~v--~~~~~~-~~~~~~~~i~~~~~g-~~  273 (388)
                      ..+|||+|+ +++|.+.++.+...|+. +|+.+.+++++.+.+++... . ++  +|-.+. ....+.+.+.+..+. +.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~i   82 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGL   82 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCCe
Confidence            478999987 99999988877777853 78888999988877766432 2 12  233330 011233333333333 69


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        83 dilinnAG~   91 (250)
T d1yo6a1          83 SLLINNAGV   91 (250)
T ss_dssp             CEEEECCCC
T ss_pred             EEEEEcCcc
Confidence            999999884

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.96  E-value=0.0049  Score=45.88  Aligned_cols=38  Identities=32%  Similarity=0.441  Sum_probs=33.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      +.++.+|+|+|+|.+|+-++..++..|. +|..+.+++.
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~-~Vtli~~~~~   64 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGV-HVSLVETQPR   64 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccc-eEEEEeeccc
Confidence            5678999999999999999999999998 9999987663

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.94  E-value=0.014  Score=49.39  Aligned_cols=76  Identities=18%  Similarity=0.164  Sum_probs=50.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHH----HHcCCcEE---EcCCCCCCccHHHHHHhhc--CCCc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIG----KRFGVTEF---VNSKNCGDKSVSQIIIDMT--DGGA  273 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~----~~lga~~v---~~~~~~~~~~~~~~i~~~~--~g~~  273 (388)
                      .+||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+    ++.|....   .|-.+  .++..+.+.+..  -|+.
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~i   79 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSD--RDQVFAAVEQARKTLGGF   79 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTS--HHHHHHHHHHHHHHTTCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCC--HHHHHHHHHHHHHHhCCc
Confidence            4588887 9999999988888899 999999998876543    33454332   23333  122222222222  2479


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+++++.|.
T Consensus        80 DilVnnAG~   88 (255)
T d1gega_          80 DVIVNNAGV   88 (255)
T ss_dssp             CEEEECCCC
T ss_pred             cEEEecccc
Confidence            999998874

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=95.85  E-value=0.018  Score=46.77  Aligned_cols=81  Identities=22%  Similarity=0.251  Sum_probs=59.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      -.|.+|+|.|.|.+|..+++++...|+ +|++.+.+.++.+....+|.+.+ ..     ++       +..-+.|+.+=|
T Consensus        25 L~gk~v~IqG~G~VG~~~A~~L~~~Ga-kvvv~d~d~~~~~~~~~~g~~~~-~~-----~~-------~~~~~~DI~iPc   90 (201)
T d1c1da1          25 LDGLTVLVQGLGAVGGSLASLAAEAGA-QLLVADTDTERVAHAVALGHTAV-AL-----ED-------VLSTPCDVFAPC   90 (201)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTCEEC-CG-----GG-------GGGCCCSEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEecchHHHHHHHHhhccccc-Cc-----cc-------cccccceeeecc
Confidence            368899999999999999999999999 99999999999888888887543 21     11       111278888877


Q ss_pred             cCCHHHHHHHHHHhh
Q 016507          280 VGLASLVQEAYACCR  294 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~  294 (388)
                      ..+...-....+.++
T Consensus        91 A~~~~I~~~~a~~i~  105 (201)
T d1c1da1          91 AMGGVITTEVARTLD  105 (201)
T ss_dssp             SCSCCBCHHHHHHCC
T ss_pred             cccccccHHHHhhhh
Confidence            654432334445553

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.85  E-value=0.0094  Score=50.80  Aligned_cols=79  Identities=22%  Similarity=0.245  Sum_probs=52.1

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCc----E--EEcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT----E--FVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~----~--v~~~~~~~~~~~~~~i~~~~  269 (388)
                      +|+++||+|+ +++|.+.++.+...|+ +|+.+++++++.+.+.    +.+..    .  ..|-.+  .++..+.+.+..
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~--~~~v~~~~~~~~   80 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTT--DAGQDEILSTTL   80 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCC--HHHHHHHHHHHH
Confidence            5778899987 9999999999989999 8999999988765443    23321    1  224333  122333333222


Q ss_pred             C--CCccEEEEccCC
Q 016507          270 D--GGADYCFECVGL  282 (388)
Q Consensus       270 ~--g~~dvvid~~g~  282 (388)
                      .  |+.|+++++.|.
T Consensus        81 ~~~g~iDilvnnAG~   95 (264)
T d1spxa_          81 GKFGKLDILVNNAGA   95 (264)
T ss_dssp             HHHSCCCEEEECCC-
T ss_pred             HHhCCCCEeeccccc
Confidence            2  389999999874

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.85  E-value=0.02  Score=45.17  Aligned_cols=72  Identities=15%  Similarity=0.098  Sum_probs=49.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH-HcC---CcEEEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK-RFG---VTEFVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~-~lg---a~~v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      ..++.+|+|+|+|+++.+++..+...+ .+|+++.|+.++.+.+. .++   ....+..++            .....+|
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~-~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~------------~~~~~~d   81 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQ-QNIVLANRTFSKTKELAERFQPYGNIQAVSMDS------------IPLQTYD   81 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTT-CEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGG------------CCCSCCS
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccC-ceeeeccchHHHHHHHHHHHhhccccchhhhcc------------ccccccc
Confidence            457889999999999999888877655 49999999988876543 333   112222111            1113799


Q ss_pred             EEEEccCCH
Q 016507          275 YCFECVGLA  283 (388)
Q Consensus       275 vvid~~g~~  283 (388)
                      ++|+|++..
T Consensus        82 iiIN~tp~g   90 (171)
T d1p77a1          82 LVINATSAG   90 (171)
T ss_dssp             EEEECCCC-
T ss_pred             eeeeccccc
Confidence            999998864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.82  E-value=0.0022  Score=54.09  Aligned_cols=75  Identities=20%  Similarity=0.193  Sum_probs=50.8

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcC--CCccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD--GGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~--g~~dvvi  277 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|+++++++++.+.+..    ...|-.+  .++..+.+.+...  |+.|+++
T Consensus         6 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~----~~~Dv~~--~~~v~~~~~~~~~~~g~iDiLV   78 (237)
T d1uzma1           6 VSRSVLVTGGNRGIGLAIAQRLAADGH-KVAVTHRGSGAPKGLFG----VEVDVTD--SDAVDRAFTAVEEHQGPVEVLV   78 (237)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSSCCCTTSEE----EECCTTC--HHHHHHHHHHHHHHHSSCSEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcchhcCceE----EEEecCC--HHHHHHHHHHHHHhcCCceEEE
Confidence            5789999987 9999999999999999 99999998766543322    2233333  1222222222222  3799999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      ++.|.
T Consensus        79 nnAG~   83 (237)
T d1uzma1          79 SNAGL   83 (237)
T ss_dssp             EECSC
T ss_pred             eeecc
Confidence            98874

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.80  E-value=0.014  Score=50.76  Aligned_cols=103  Identities=19%  Similarity=0.265  Sum_probs=64.4

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc---------hHHHH----HHHcCCcEEEcCCCCCCccHHHHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS---------EKFEI----GKRFGVTEFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~---------~~~~~----~~~lga~~v~~~~~~~~~~~~~~i~  266 (388)
                      .|.++||+|+ +++|.+.++.+...|+ +|++.+++.         +..+.    +...+.....|..+.  .+..+.+.
T Consensus         6 ~gKvalITGas~GIG~aiA~~la~~Ga-~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~v~   82 (302)
T d1gz6a_           6 DGRVVLVTGAGGGLGRAYALAFAERGA-LVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSV--EAGEKLVK   82 (302)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCG--GGHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchH--HHHHHHHH
Confidence            4788999987 9999999999999999 899886543         22221    222344445555441  23333333


Q ss_pred             hhc--CCCccEEEEccCCH-------------------------HHHHHHHHHhhc-CCceEEEEccC
Q 016507          267 DMT--DGGADYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVD  306 (388)
Q Consensus       267 ~~~--~g~~dvvid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~  306 (388)
                      +..  .|+.|+++++.|..                         ...+.++..|.. ++|+||.++..
T Consensus        83 ~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~  150 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASA  150 (302)
T ss_dssp             HHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCH
T ss_pred             HHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCCh
Confidence            222  24899999998842                         123445555532 24899999853

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.76  E-value=0.013  Score=46.99  Aligned_cols=100  Identities=16%  Similarity=0.132  Sum_probs=65.1

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-E--EEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-E--FVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~--v~~~~~~~~~~~~~~i  265 (388)
                      +....++++|++||=+|.|. |..++.+|+. +. +|++++.+++..+.+++    +|.. .  ++.      .+..+.+
T Consensus        25 il~~l~~~~g~~VLDiGcGs-G~~s~~lA~~-~~-~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~------gda~~~~   95 (186)
T d1l3ia_          25 IMCLAEPGKNDVAVDVGCGT-GGVTLELAGR-VR-RVYAIDRNPEAISTTEMNLQRHGLGDNVTLME------GDAPEAL   95 (186)
T ss_dssp             HHHHHCCCTTCEEEEESCTT-SHHHHHHHTT-SS-EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEE------SCHHHHH
T ss_pred             HHHhcCCCCCCEEEEEECCe-Eccccccccc-ce-EEEEecCCHHHHHHHHHHHHHcCCCcceEEEE------Cchhhcc
Confidence            44567899999999998644 4445566654 44 99999999988777664    5542 2  222      2222222


Q ss_pred             HhhcCCCccEEEEccCC---HHHHHHHHHHhhcCCceEEEEc
Q 016507          266 IDMTDGGADYCFECVGL---ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g~---~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      .  ....||.|+...+.   ...++.+.+.|+++ |+++...
T Consensus        96 ~--~~~~~D~v~~~~~~~~~~~~~~~~~~~Lkpg-G~lvi~~  134 (186)
T d1l3ia_          96 C--KIPDIDIAVVGGSGGELQEILRIIKDKLKPG-GRIIVTA  134 (186)
T ss_dssp             T--TSCCEEEEEESCCTTCHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             c--ccCCcCEEEEeCccccchHHHHHHHHHhCcC-CEEEEEe
Confidence            1  12389999865443   23467888889997 9887654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.67  E-value=0.015  Score=49.64  Aligned_cols=82  Identities=13%  Similarity=0.126  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcc-c--hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHhhc--C
Q 016507          200 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       200 ~~~~~VlI~Ga-g--~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      -+|.++||+|+ |  ++|.+.++.+...|+ +|+.++++++..+.+++    .+...++..+-.+..+..+.+.+..  -
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga-~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   81 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDL   81 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHc
Confidence            35899999986 5  699999999999999 99999988754333332    2222222111111233333332222  2


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      |++|+++.+.+.
T Consensus        82 g~id~lV~nag~   93 (274)
T d2pd4a1          82 GSLDFIVHSVAF   93 (274)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCeEEeeccc
Confidence            479999988874

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=95.62  E-value=0.039  Score=42.41  Aligned_cols=82  Identities=23%  Similarity=0.216  Sum_probs=56.1

Q ss_pred             EEEEEccchhHHHHHH-HHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGLGSIGLAVAE-GARLCGATRIIGVDVISEKFEIGKR-FGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~-la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|.++|+|.+|.+.++ +.+.-+. +|++.++++++.+.+.+ +|+. +.+..+    ..         ...|+||=|+-
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~-~i~v~~r~~~~~~~l~~~~~~~-~~~~~~----~v---------~~~Div~lavk   66 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGY-RIYIANRGAEKRERLEKELGVE-TSATLP----EL---------HSDDVLILAVK   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSC-EEEEECSSHHHHHHHHHHTCCE-EESSCC----CC---------CTTSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCC-cEEEEeCChhHHHHhhhhcccc-cccccc----cc---------cccceEEEecC
Confidence            5889999999998777 4555335 99999999998877655 6664 333222    11         15789998876


Q ss_pred             CHHHHHHHHHHhhcCCceEEE
Q 016507          282 LASLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       282 ~~~~~~~~~~~l~~~~G~~v~  302 (388)
                       +..+...++.+.+. +.++.
T Consensus        67 -P~~~~~v~~~l~~~-~~~vi   85 (152)
T d1yqga2          67 -PQDMEAACKNIRTN-GALVL   85 (152)
T ss_dssp             -HHHHHHHHTTCCCT-TCEEE
T ss_pred             -HHHHHHhHHHHhhc-ccEEe
Confidence             33377777777764 65543

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=95.59  E-value=0.045  Score=45.76  Aligned_cols=163  Identities=15%  Similarity=0.099  Sum_probs=87.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEE-cCCchHHHHH----HHcCCcE-E--EcCCCCCCccHHHHHHhhc--CCC
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIG----KRFGVTE-F--VNSKNCGDKSVSQIIIDMT--DGG  272 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~~~~~~~~~~----~~lga~~-v--~~~~~~~~~~~~~~i~~~~--~g~  272 (388)
                      .|||+|+ +++|.+.++.+...|+ +|+.. .++++..+.+    ++.|... .  .|-.+  .++..+.+.+..  .|+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~--~~~v~~~~~~~~~~~g~   79 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGC-KVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSK--EADVEAMMKTAIDAWGT   79 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTS--HHHHHHHHHHHHHHSSC
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHHHHHHcCC
Confidence            4677787 9999999999989999 88776 4455544433    3455432 2  23333  122332222222  248


Q ss_pred             ccEEEEccCCH-------------------------HHHHHHHHHh--hcCCceEEEEccCCCCCccc-cCH--------
Q 016507          273 ADYCFECVGLA-------------------------SLVQEAYACC--RKGWGKTIVLGVDQPGSQLS-LSS--------  316 (388)
Q Consensus       273 ~dvvid~~g~~-------------------------~~~~~~~~~l--~~~~G~~v~~g~~~~~~~~~-~~~--------  316 (388)
                      .|+++++.|..                         ...+.++..|  ..+ |+++.++...+....+ ...        
T Consensus        80 iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~-G~IVnisS~~~~~~~~~~~~Y~asKaal  158 (244)
T d1edoa_          80 IDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRK-GRIINIASVVGLIGNIGQANYAAAKAGV  158 (244)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEECCTHHHHCCTTCHHHHHHHHHH
T ss_pred             CCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCC-cEEEEEcChhhcCCCCCCHHHHHHHHHH
Confidence            99999988742                         2234455555  344 9999998632111110 000        


Q ss_pred             --------HHHHhcCcEEEEeeecCCCc---cCcHHHHHHHHhCCCCCCCcceeeeEecchHHHHHHHHh
Q 016507          317 --------FEVLHSGKILMGSLFGGLKA---KSDIPILLKRYMDKELELDKFVTHEMKFEEINSAFDLLI  375 (388)
Q Consensus       317 --------~~~~~~~~~i~g~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~A~~~~~  375 (388)
                              ..+-.+++++.....+....   ....++..+.+.+. .++.+    ...-+|+.++..+|.
T Consensus       159 ~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~~~~~~~~~~~~~~-~pl~R----~~~p~dvA~~v~fLa  223 (244)
T d1edoa_         159 IGFSKTAAREGASRNINVNVVCPGFIASDMTAKLGEDMEKKILGT-IPLGR----TGQPENVAGLVEFLA  223 (244)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHTTCHHHHHHHHTS-CTTCS----CBCHHHHHHHHHHHH
T ss_pred             HHChHHHHHHHhhhCcEEEEEecceeccHHHHHhhHHHHHHHHhc-CCCCC----CcCHHHHHHHHHHHH
Confidence                    11223567777665544321   11122333444332 22332    224578999988874

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.57  E-value=0.013  Score=49.45  Aligned_cols=74  Identities=11%  Similarity=0.039  Sum_probs=50.5

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC----CcEEEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG----VTEFVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg----a~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      +.||+|+ +++|.+.++.+...|+ +|++.+++.++.+.++.++    ...+.+.++  .+.+.+.+.+.. |+.|++++
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~~~dv~~~~~--~~~~~~~~~~~~-G~iDiLVn   77 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGH-TVACHDESFKQKDELEAFAETYPQLKPMSEQE--PAELIEAVTSAY-GQVDVLVS   77 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTC-EEEECCGGGGSHHHHHHHHHHCTTSEECCCCS--HHHHHHHHHHHH-SCCCEEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhhhCcEEEeccCCHHH--HHHHHHHHHHHc-CCCCEEEE
Confidence            7899987 9999999998888999 9999999888777666532    222333322  123333333332 47999998


Q ss_pred             ccC
Q 016507          279 CVG  281 (388)
Q Consensus       279 ~~g  281 (388)
                      +.|
T Consensus        78 NAg   80 (252)
T d1zmta1          78 NDI   80 (252)
T ss_dssp             ECC
T ss_pred             CCc
Confidence            765

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=95.52  E-value=0.31  Score=36.90  Aligned_cols=94  Identities=14%  Similarity=0.020  Sum_probs=63.2

Q ss_pred             CEEEEEc-cchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC--CccEEEEc
Q 016507          203 STVVIFG-LGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG--GADYCFEC  279 (388)
Q Consensus       203 ~~VlI~G-ag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g--~~dvvid~  279 (388)
                      .+|.|+| .|.+|...+..++..|+ .|.+.++++.........+++.++....  .....+.+.+...-  .=.+++|+
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~-~V~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~~~v~~~~~~~~~~~~iiiD~   86 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGY-PISILDREDWAVAESILANADVVIVSVP--INLTLETIERLKPYLTENMLLADL   86 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTC-CEEEECTTCGGGHHHHHTTCSEEEECSC--GGGHHHHHHHHGGGCCTTSEEEEC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCC-CcEecccccccccchhhhhccccccccc--hhhheeeeecccccccCCceEEEe
Confidence            5899999 69999999999999999 9999999887766655567777665443  23344444444332  23588898


Q ss_pred             cCCHHHHHHHHHHhhcCCceEE
Q 016507          280 VGLASLVQEAYACCRKGWGKTI  301 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v  301 (388)
                      .+........+....+  .+++
T Consensus        87 ~Svk~~~~~~~~~~~~--~~~v  106 (152)
T d2pv7a2          87 TSVKREPLAKMLEVHT--GAVL  106 (152)
T ss_dssp             CSCCHHHHHHHHHHCS--SEEE
T ss_pred             cccCHHHHHHHHHHcc--CCEE
Confidence            8766544444444433  4554

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=95.48  E-value=0.026  Score=46.53  Aligned_cols=101  Identities=18%  Similarity=0.280  Sum_probs=68.6

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIII  266 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i~  266 (388)
                      +.+.++++++++||=+|.| .|..+..+++. |+ +|++++.+++..+.+++    .+.+.  ++..+.   .++     
T Consensus         7 ll~~~~l~~~~rVLDiGcG-~G~~~~~l~~~-~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~---~~l-----   75 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATG-GGHVANAFAPF-VK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA---EQM-----   75 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCT-TCHHHHHHGGG-SS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC----CC-----
T ss_pred             HHHhcCCCCcCEEEEeccc-CcHHHHHHHHh-CC-EEEEEECCHHHHhhhhhccccccccccccccccc---ccc-----
Confidence            5678899999999999976 47777777755 66 89999999987776654    34332  222221   111     


Q ss_pred             hhcCCCccEEEEccC-----CH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          267 DMTDGGADYCFECVG-----LA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       267 ~~~~g~~dvvid~~g-----~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .+..+.||+|+..-.     .. ..+.++.+.|+++ |.++....
T Consensus        76 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~Lkpg-G~l~i~~~  119 (231)
T d1vl5a_          76 PFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKG-GQLLLVDN  119 (231)
T ss_dssp             CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccccccccccccccccCCHHHHHHHHHHhcCCC-cEEEEEeC
Confidence            122337999986432     22 4478999999998 99887643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.47  E-value=0.007  Score=52.17  Aligned_cols=102  Identities=11%  Similarity=0.139  Sum_probs=68.0

Q ss_pred             HHHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHh
Q 016507          192 AAWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       192 ~l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~  267 (388)
                      .+.+.+++++|++||=+|.|. |..+..+++..|+ +|++++.+++..+++++    .|....+....   .+.    + 
T Consensus        43 ~~~~~l~l~~g~~VLDiGCG~-G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~---~d~----~-  112 (280)
T d2fk8a1          43 LNLDKLDLKPGMTLLDIGCGW-GTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLL---QGW----E-  112 (280)
T ss_dssp             HHHTTSCCCTTCEEEEESCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEE---SCG----G-
T ss_pred             HHHHHcCCCCCCEEEEecCCc-hHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhh---hhh----h-
Confidence            466778899999999998654 3456678888898 99999999998887765    24321111110   111    1 


Q ss_pred             hcCCCccEEEE-----ccCCH---HHHHHHHHHhhcCCceEEEEc
Q 016507          268 MTDGGADYCFE-----CVGLA---SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       268 ~~~g~~dvvid-----~~g~~---~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ...+.||.|+.     .++..   ..+..+.+.|+++ |+++.-.
T Consensus       113 ~~~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkpg-G~~~i~~  156 (280)
T d2fk8a1         113 DFAEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPAD-GRMTVQS  156 (280)
T ss_dssp             GCCCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTT-CEEEEEE
T ss_pred             hhccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCC-ceEEEEE
Confidence            12347898854     22222   3378889999998 9998654

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.47  E-value=0.0024  Score=53.69  Aligned_cols=98  Identities=17%  Similarity=0.222  Sum_probs=60.1

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC---CccHHHHHHhhc-CCCccEE
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG---DKSVSQIIIDMT-DGGADYC  276 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~---~~~~~~~i~~~~-~g~~dvv  276 (388)
                      +.+|||+|+ +++|.+.++.+...|+ +|+.++++++....     ....+..+...   .....+.+.... .++.|++
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~-~V~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~l   75 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGY-TVLNIDLSANDQAD-----SNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   75 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCCTTSS-----EEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCchhccc-----ccceeccccCchhHHHHHHHHHHHHhcCCCeeEE
Confidence            457999987 9999999999999999 89999987654211     11111111100   011122222222 2479999


Q ss_pred             EEccCCH--------------------------HHHHHHHHHhhcCCceEEEEccC
Q 016507          277 FECVGLA--------------------------SLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       277 id~~g~~--------------------------~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +++.|..                          ...+..+..++++ |+++.++..
T Consensus        76 innAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~-g~Iv~isS~  130 (235)
T d1ooea_          76 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPG-GLLQLTGAA  130 (235)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEE-EEEEEECCG
T ss_pred             EECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccc-eEEEEeccH
Confidence            9988731                          1134555666776 999998864

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=95.47  E-value=0.025  Score=49.31  Aligned_cols=76  Identities=25%  Similarity=0.336  Sum_probs=45.3

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC--chH---HHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI--SEK---FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~--~~~---~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .+|||+|+ |-+|...++.+...|+ +|+++++-  ..+   .+.+...+--.++.-+-.+...+.+.+...   ++|+|
T Consensus         1 ~KILVTGatGfIGs~lv~~Ll~~g~-~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~---~~d~V   76 (338)
T d1orra_           1 AKLLITGGCGFLGSNLASFALSQGI-DLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKY---MPDSC   76 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHH---CCSEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhc---CCceE
Confidence            47999997 9999999998888899 89998631  222   233333322122221110112233333222   79999


Q ss_pred             EEccCC
Q 016507          277 FECVGL  282 (388)
Q Consensus       277 id~~g~  282 (388)
                      |++...
T Consensus        77 ih~aa~   82 (338)
T d1orra_          77 FHLAGQ   82 (338)
T ss_dssp             EECCCC
T ss_pred             Eeeccc
Confidence            998763

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.031  Score=47.02  Aligned_cols=82  Identities=15%  Similarity=0.197  Sum_probs=51.8

Q ss_pred             CCCCEEEEEcc-c--hhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHhhcC--
Q 016507          200 EVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTD--  270 (388)
Q Consensus       200 ~~~~~VlI~Ga-g--~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~~~~--  270 (388)
                      -.|.++||+|+ |  ++|.+.+..+...|+ +|+.++++++..+.+++    .+....+..+..+..+..+...+...  
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~-~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVW   81 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhcc
Confidence            46889999987 6  688888888888999 89999988765554433    34333333222112223333333322  


Q ss_pred             CCccEEEEccCC
Q 016507          271 GGADYCFECVGL  282 (388)
Q Consensus       271 g~~dvvid~~g~  282 (388)
                      +..|+.+++.+.
T Consensus        82 ~~~d~~v~~a~~   93 (258)
T d1qsga_          82 PKFDGFVHSIGF   93 (258)
T ss_dssp             SSEEEEEECCCC
T ss_pred             cccceEEEeecc
Confidence            278999987653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.41  E-value=0.093  Score=40.63  Aligned_cols=88  Identities=17%  Similarity=0.214  Sum_probs=60.4

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      .+|.++|.|.+|...+.-+...|+ .|.+.++++++.+.+.+.++...        ....+.+.     ..|+++-|+..
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~-~v~~~d~~~~~~~~~~~~~~~~~--------~~~~e~~~-----~~diii~~v~~   67 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGY-LLNVFDLVQSAVDGLVAAGASAA--------RSARDAVQ-----GADVVISMLPA   67 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHTTCEEC--------SSHHHHHT-----SCSEEEECCSC
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCC-eEEEEECchhhhhhhhhhhcccc--------chhhhhcc-----ccCeeeecccc
Confidence            368899999999988887777899 99999999999998888776422        12222221     57888888887


Q ss_pred             HHHHHHH-------HHHhhcCCceEEEEcc
Q 016507          283 ASLVQEA-------YACCRKGWGKTIVLGV  305 (388)
Q Consensus       283 ~~~~~~~-------~~~l~~~~G~~v~~g~  305 (388)
                      .......       ...+.++ -.++.++.
T Consensus        68 ~~~~~~v~~~~~~~~~~l~~g-~iiid~st   96 (162)
T d3cuma2          68 SQHVEGLYLDDDGLLAHIAPG-TLVLECST   96 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHSCTT-CEEEECSC
T ss_pred             hhhHHHHHhccccccccCCCC-CEEEECCC
Confidence            7544443       2334443 45555544

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.0075  Score=50.23  Aligned_cols=98  Identities=13%  Similarity=0.156  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc---EEEcCCCCCCccHHHHHHhhcCCCccE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT---EFVNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~---~v~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      ..+|.+||-+|.|. |..+..+++..+. +|++++.++...+.+++....   .+... .   .+.......+..+.||.
T Consensus        51 ~~~g~~VLdIGcG~-G~~a~~~a~~~~~-~v~~id~s~~~~~~a~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~fD~  124 (229)
T d1zx0a1          51 SSKGGRVLEVGFGM-AIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPL-K---GLWEDVAPTLPDGHFDG  124 (229)
T ss_dssp             TTTCEEEEEECCTT-SHHHHHHHTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEE-E---SCHHHHGGGSCTTCEEE
T ss_pred             ccCCCeEEEeeccc-hHHHHHHHHcCCC-eEEEeCCCHHHHHHHHHHhhhcccccccc-c---ccccccccccccccccc
Confidence            46789999998755 6777888887655 899999999988888764321   11110 0   12333333344448988


Q ss_pred             E-EEccCCH----------HHHHHHHHHhhcCCceEEEE
Q 016507          276 C-FECVGLA----------SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       276 v-id~~g~~----------~~~~~~~~~l~~~~G~~v~~  303 (388)
                      + +|.+...          ..+..+.+.|++| |.++..
T Consensus       125 i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpG-G~~~~~  162 (229)
T d1zx0a1         125 ILYDTYPLSEETWHTHQFNFIKNHAFRLLKPG-GVLTYC  162 (229)
T ss_dssp             EEECCCCCBGGGTTTHHHHHHHHTHHHHEEEE-EEEEEC
T ss_pred             eeecccccccccccccCHHHHHHHHHHHcCCC-cEEEEE
Confidence            8 4655432          2356788999998 988754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.011  Score=46.20  Aligned_cols=88  Identities=9%  Similarity=0.106  Sum_probs=56.6

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-----EEcCCCCCCccHHHHHHhhcCCCccEEEE
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-----FVNSKNCGDKSVSQIIIDMTDGGADYCFE  278 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-----v~~~~~~~~~~~~~~i~~~~~g~~dvvid  278 (388)
                      +|+|+|+|.+|.+....+...|. .|..+++++++.+.....+.+.     .+...      ..+.+     +.+|++|-
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----~~~D~iii   69 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNLVETDGSIFNESLTAN------DPDFL-----ATSDLLLV   69 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEEECTTSCEEEEEEEES------CHHHH-----HTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhccccCCccccccccccc------hhhhh-----cccceEEE
Confidence            68999999999988888877898 9999999887655443332211     11111      12222     17999999


Q ss_pred             ccCCHHHHHHHHHHhh----cCCceEEEEcc
Q 016507          279 CVGLASLVQEAYACCR----KGWGKTIVLGV  305 (388)
Q Consensus       279 ~~g~~~~~~~~~~~l~----~~~G~~v~~g~  305 (388)
                      ++-... +..+++.+.    ++ ..++.+.+
T Consensus        70 ~vka~~-~~~~~~~l~~~~~~~-~~Iv~~qN   98 (167)
T d1ks9a2          70 TLKAWQ-VSDAVKSLASTLPVT-TPILLIHN   98 (167)
T ss_dssp             CSCGGG-HHHHHHHHHTTSCTT-SCEEEECS
T ss_pred             eecccc-hHHHHHhhccccCcc-cEEeeccC
Confidence            998765 555555444    33 45665543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.31  E-value=0.036  Score=42.69  Aligned_cols=85  Identities=13%  Similarity=0.098  Sum_probs=60.5

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHH-HHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGL  282 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~  282 (388)
                      +|.++|.|.+|.+.+.-....|. ++++.+++.++.+.+ +++|+..+        .+..+.+.     ..|+||-|+..
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~-~i~v~~r~~~~~~~l~~~~g~~~~--------~~~~~~~~-----~~dvIilavkp   67 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPH-ELIISGSSLERSKEIAEQLALPYA--------MSHQDLID-----QVDLVILGIKP   67 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSC-EEEEECSSHHHHHHHHHHHTCCBC--------SSHHHHHH-----TCSEEEECSCG
T ss_pred             EEEEEeccHHHHHHHHHHHhCCC-eEEEEcChHHhHHhhccccceeee--------chhhhhhh-----ccceeeeecch
Confidence            57899999999988876666677 899999998877665 56776532        12223222     68999988864


Q ss_pred             HHHHHHHHHHhhcCCceEEEEc
Q 016507          283 ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       283 ~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      .. +...++.+.++ ..++.+.
T Consensus        68 ~~-~~~vl~~l~~~-~~iis~~   87 (152)
T d2ahra2          68 QL-FETVLKPLHFK-QPIISMA   87 (152)
T ss_dssp             GG-HHHHHTTSCCC-SCEEECC
T ss_pred             Hh-HHHHhhhcccc-eeEeccc
Confidence            44 77888888875 6666553

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.27  E-value=0.024  Score=46.54  Aligned_cols=72  Identities=17%  Similarity=0.104  Sum_probs=46.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCc-EEEEEcCCchHHHHHHHcCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGAT-RIIGVDVISEKFEIGKRFGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~-~Vi~~~~~~~~~~~~~~lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      .+|||+|+ |.+|...+..+...|.+ .|+.+.+++++.+.+.. ++..+. |..+   .   +.+.+... ++|.|+++
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~---~---~~~~~~~~-~~d~vi~~   75 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITD---A---DSINPAFQ-GIDALVIL   75 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTS---H---HHHHHHHT-TCSEEEEC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeecc---c---cccccccc-cceeeEEE
Confidence            48999997 99999999999888853 57777777776654432 333322 2222   1   22222222 78999998


Q ss_pred             cCC
Q 016507          280 VGL  282 (388)
Q Consensus       280 ~g~  282 (388)
                      .+.
T Consensus        76 a~~   78 (252)
T d2q46a1          76 TSA   78 (252)
T ss_dssp             CCC
T ss_pred             Eee
Confidence            763

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=95.26  E-value=0.1  Score=39.80  Aligned_cols=101  Identities=21%  Similarity=0.243  Sum_probs=65.1

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHc--CCcEEEEEcCCchHH---HHHHHcCCcEEEcCCCCCCcc--------------HH
Q 016507          203 STVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKF---EIGKRFGVTEFVNSKNCGDKS--------------VS  262 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~--g~~~Vi~~~~~~~~~---~~~~~lga~~v~~~~~~~~~~--------------~~  262 (388)
                      .+|.|+|+ |++|..++.+.+..  .+ +|+++.....-.   +.++++....++-.++.....              -.
T Consensus         3 K~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~lsa~~N~~~L~~q~~ef~Pk~v~i~d~~~~~~l~~~~~~~~~~v~~g~   81 (150)
T d1r0ka2           3 RTVTVLGATGSIGHSTLDLIERNLDRY-QVIALTANRNVKDLADAAKRTNAKRAVIADPSLYNDLKEALAGSSVEAAAGA   81 (150)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTGGGE-EEEEEEESSCHHHHHHHHHHTTCSEEEESCGGGHHHHHHHTTTCSSEEEESH
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCCCCc-EEEEEEeCCCHHHHHHHHHhhccccceeccHHHHHHHHHHhhhcccccccCc
Confidence            68999998 99999999999864  46 777776555432   334457776665433200000              11


Q ss_pred             HHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          263 QIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       263 ~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +.+.+.....+|+|+.++.+..++...+..++.  |.-+.+++.
T Consensus        82 ~~l~~~~~~~~D~vv~Ai~G~~GL~~tl~ai~~--gk~iaLANK  123 (150)
T d1r0ka2          82 DALVEAAMMGADWTMAAIIGCAGLKATLAAIRK--GKTVALANK  123 (150)
T ss_dssp             HHHHHHHTSCCSEEEECCCSGGGHHHHHHHHHT--TSEEEECCS
T ss_pred             cchheecccccceeeeecCchhHHHHHHHHHhc--CCEEEEecc
Confidence            111222222689999998887778888888887  567777653

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.22  E-value=0.12  Score=39.94  Aligned_cols=92  Identities=21%  Similarity=0.289  Sum_probs=54.8

Q ss_pred             EEEEEccchhHH-HHHHHHHHcCCcEEEEEc-CCc--hHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcC-CCccEEEE
Q 016507          204 TVVIFGLGSIGL-AVAEGARLCGATRIIGVD-VIS--EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD-GGADYCFE  278 (388)
Q Consensus       204 ~VlI~Gag~vG~-~ai~la~~~g~~~Vi~~~-~~~--~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~-g~~dvvid  278 (388)
                      +|.|+|+|.+|. ..+++++....-+++++. +++  ....+++++|.....       . ..+.+.+... .++|+||+
T Consensus         6 rvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~-------~-~~d~l~~~~~~~~iDiVf~   77 (157)
T d1nvmb1           6 KVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY-------A-GVEGLIKLPEFADIDFVFD   77 (157)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES-------S-HHHHHHHSGGGGGEEEEEE
T ss_pred             EEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc-------c-ceeeeeecccccccCEEEE
Confidence            789999999987 566777765433666664 343  345677888875431       1 2233333222 27999999


Q ss_pred             ccCCHHHHHHH--HHHhhcCCceEEEEc
Q 016507          279 CVGLASLVQEA--YACCRKGWGKTIVLG  304 (388)
Q Consensus       279 ~~g~~~~~~~~--~~~l~~~~G~~v~~g  304 (388)
                      +++........  .+.+..| -.++...
T Consensus        78 ATpag~h~~~~~~~~aa~~G-~~VID~s  104 (157)
T d1nvmb1          78 ATSASAHVQNEALLRQAKPG-IRLIDLT  104 (157)
T ss_dssp             CSCHHHHHHHHHHHHHHCTT-CEEEECS
T ss_pred             cCCchhHHHhHHHHHHHHcC-CEEEEcc
Confidence            98865545544  3445543 3444443

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=95.18  E-value=0.041  Score=44.36  Aligned_cols=87  Identities=18%  Similarity=0.113  Sum_probs=59.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...+++++.+|+ +|++.++........  .+..    .     .++.+.+.     ..|+|+-++
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~-~V~~~d~~~~~~~~~--~~~~----~-----~~l~~~l~-----~sDii~~~~  104 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGA-KVITYDIFRNPELEK--KGYY----V-----DSLDDLYK-----QADVISLHV  104 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHH--TTCB----C-----SCHHHHHH-----HCSEEEECS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcc-cccccCccccccccc--ceee----e-----cccccccc-----ccccccccC
Confidence            47899999999999999999999999 999998765433221  1211    1     23444443     468888776


Q ss_pred             CCHHH-----HHHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL-----VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~-----~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .....     -...++.|+++ ..+|.++.
T Consensus       105 plt~~T~~li~~~~l~~mk~~-a~lIN~sR  133 (197)
T d1j4aa1         105 PDVPANVHMINDESIAKMKQD-VVIVNVSR  133 (197)
T ss_dssp             CCCGGGTTCBSHHHHHHSCTT-EEEEECSC
T ss_pred             CccccccccccHHHHhhhCCc-cEEEecCc
Confidence            53211     25678888886 77777763

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.11  Score=39.59  Aligned_cols=100  Identities=24%  Similarity=0.225  Sum_probs=65.0

Q ss_pred             EEEEEcc-chhHHHHHHHHHHc--CCcEEEEEcCCchHH---HHHHHcCCcEEEcCCCCCCccHH---------------
Q 016507          204 TVVIFGL-GSIGLAVAEGARLC--GATRIIGVDVISEKF---EIGKRFGVTEFVNSKNCGDKSVS---------------  262 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~--g~~~Vi~~~~~~~~~---~~~~~lga~~v~~~~~~~~~~~~---------------  262 (388)
                      +|.|+|+ |++|..++.+.+..  .. +|+++.....-.   +.++++....++-.++.....+.               
T Consensus         3 ~I~IlGsTGSIG~~tL~Vi~~~~d~f-~v~~Lsa~~N~~~L~~q~~~f~pk~v~i~d~~~~~~l~~~l~~~~~~~~~~~g   81 (151)
T d1q0qa2           3 QLTILGSTGSIGCSTLDVVRHNPEHF-RVVALVAGKNVTRMVEQCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSG   81 (151)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTTE-EEEEEEESSCHHHHHHHHHHHCCSEEEESSHHHHHHHHHHHHHTTCCCEEEES
T ss_pred             eEEEEcCCcHHHHHHHHHHHhCCCCc-EEEEEEecCcHHHHHHHHHHHhhcccccccHHHHHHHHHHhhhhccccccccC
Confidence            6899998 99999999999875  35 777775544332   23345677666544330000111               


Q ss_pred             -HHHHhhcCC-CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          263 -QIIIDMTDG-GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       263 -~~i~~~~~g-~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       +.+.++..- ++|+|+.++.+..++...+..++.  |+-+.+++.
T Consensus        82 ~~~l~~~~~~~~~D~vi~AI~G~aGL~~t~~aik~--gk~iaLANK  125 (151)
T d1q0qa2          82 QQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRA--GKTILLANK  125 (151)
T ss_dssp             HHHHHHHHTCTTCCEEEECCSSGGGHHHHHHHHHT--TCEEEECCH
T ss_pred             hHHHHHHhcCCCCCEEEEecCcccHHHHHHHHHhc--CCeEEEEcc
Confidence             122222222 789999999888889999998887  677777763

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=95.12  E-value=0.0073  Score=52.00  Aligned_cols=102  Identities=14%  Similarity=0.086  Sum_probs=68.6

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQII  265 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i  265 (388)
                      +.....++++++||=+|.|. |..+..+++..|+ +|++++.++...+.+++    .|..   .++..+-   .++    
T Consensus        59 l~~~~~l~~~~~vLDiGcG~-G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~---~~l----  129 (282)
T d2o57a1          59 LAMTGVLQRQAKGLDLGAGY-GGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSF---LEI----  129 (282)
T ss_dssp             HHHTTCCCTTCEEEEETCTT-SHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCT---TSC----
T ss_pred             HHHhcCCCCCCEEEEeCCCC-cHHHhhhhccCCc-EEEEEeccchhhhhhhccccccccccccccccccc---ccc----
Confidence            44556789999999998764 6677788887798 99999999988776664    3432   1222111   111    


Q ss_pred             HhhcCCCccEEEEccC-----CH-HHHHHHHHHhhcCCceEEEEcc
Q 016507          266 IDMTDGGADYCFECVG-----LA-SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       266 ~~~~~g~~dvvid~~g-----~~-~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                       .+..+.||+|+-.-.     .. ..+..+.+.|+++ |+++....
T Consensus       130 -~~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~Lkpg-G~l~~~~~  173 (282)
T d2o57a1         130 -PCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPR-GVMAITDP  173 (282)
T ss_dssp             -SSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             -cccccccchhhccchhhhccCHHHHHHHHHHhcCCC-cEEEEEEe
Confidence             112237999975322     22 4478999999998 99887654

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.044  Score=45.80  Aligned_cols=47  Identities=32%  Similarity=0.322  Sum_probs=38.6

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHH-HHHcCCc
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEI-GKRFGVT  248 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~-~~~lga~  248 (388)
                      +|.++||+|+ +++|.+.++.+...|+ +|+.+++++++.+. +++++..
T Consensus         4 kGKvalITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           4 KGLVAVITGGASGLGLATAERLVGQGA-SAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhCCC
Confidence            6889999987 9999999999999999 89999998876654 4446543

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=95.00  E-value=0.078  Score=40.89  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=74.2

Q ss_pred             HHHHhcC-CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcC
Q 016507          192 AAWRTAN-VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       192 ~l~~~~~-~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ++.+..+ .-.|.+++|.|-|-+|.-.++-++.+|+ +|++++.+|-+.=.+.--|.. |        ..+.+.+     
T Consensus        12 ~i~r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga-~V~V~E~DPi~alqA~mdGf~-v--------~~~~~a~-----   76 (163)
T d1v8ba1          12 GLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGA-RVYITEIDPICAIQAVMEGFN-V--------VTLDEIV-----   76 (163)
T ss_dssp             HHHHHHCCCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSCHHHHHHHHTTTCE-E--------CCHHHHT-----
T ss_pred             HHHHHhCceecCCEEEEecccccchhHHHHHHhCCC-EEEEEecCchhhHHHHhcCCc-c--------CchhHcc-----
Confidence            3445444 4589999999999999999999999999 999999988543222222332 2        1233322     


Q ss_pred             CCccEEEEccCCHHH-HHHHHHHhhcCCceEEEEccCCCCCccccCHHHH
Q 016507          271 GGADYCFECVGLASL-VQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV  319 (388)
Q Consensus       271 g~~dvvid~~g~~~~-~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~  319 (388)
                      ...|+++-++|.... ..+.++.|+.+ ..+...|..    +..++...+
T Consensus        77 ~~aDi~vTaTGn~~vI~~~h~~~MKdg-aIl~N~GHf----d~EIdv~~L  121 (163)
T d1v8ba1          77 DKGDFFITCTGNVDVIKLEHLLKMKNN-AVVGNIGHF----DDEIQVNEL  121 (163)
T ss_dssp             TTCSEEEECCSSSSSBCHHHHTTCCTT-CEEEECSST----TTSBCHHHH
T ss_pred             ccCcEEEEcCCCCccccHHHHHHhhCC-eEEEecccc----chhhhhHHH
Confidence            267999999998753 46788899986 666666653    334555443

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.00  E-value=0.036  Score=46.43  Aligned_cols=77  Identities=14%  Similarity=0.187  Sum_probs=48.5

Q ss_pred             CEEEEEcc-chhHHHHHHHH-H--HcCCcEEEEEcCCchHHHHHHHc---CCc-E--EEcCCCCCCccHHH---HHHhhc
Q 016507          203 STVVIFGL-GSIGLAVAEGA-R--LCGATRIIGVDVISEKFEIGKRF---GVT-E--FVNSKNCGDKSVSQ---IIIDMT  269 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la-~--~~g~~~Vi~~~~~~~~~~~~~~l---ga~-~--v~~~~~~~~~~~~~---~i~~~~  269 (388)
                      .+|||+|+ +++|.+.++.+ +  ..|+ +|+++++++++.+.++++   +.. .  .+|-.+  .+...+   .+.+..
T Consensus         3 KtilITGas~GIG~a~a~~l~~~a~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~--~~~v~~~~~~i~~~~   79 (248)
T d1snya_           3 NSILITGCNRGLGLGLVKALLNLPQPPQ-HLFTTCRNREQAKELEDLAKNHSNIHILEIDLRN--FDAYDKLVADIEGVT   79 (248)
T ss_dssp             SEEEESCCSSHHHHHHHHHHHTSSSCCS-EEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTC--GGGHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHhcCCcEEEEEEEecc--HHHHHHHHhhhHHHh
Confidence            47999997 99999987654 3  3578 999999998876655432   222 1  233333  233333   333333


Q ss_pred             C-CCccEEEEccCC
Q 016507          270 D-GGADYCFECVGL  282 (388)
Q Consensus       270 ~-g~~dvvid~~g~  282 (388)
                      . ++.|+++++.|.
T Consensus        80 ~~~~iDiLvnNAg~   93 (248)
T d1snya_          80 KDQGLNVLFNNAGI   93 (248)
T ss_dssp             GGGCCSEEEECCCC
T ss_pred             hcCCcceEEeeccc
Confidence            3 379999998763

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.96  E-value=0.01  Score=47.62  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=31.5

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      +.+|+|+|+|+.|+.++..+...|++.|.++++++.
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            578999999999999999999999855888887663

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.96  E-value=0.033  Score=46.10  Aligned_cols=102  Identities=16%  Similarity=0.223  Sum_probs=66.6

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHc----CCcEEEcCCCCCCccHHHHHHhhc
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      +...++||++||=+|+|+ |..+..+++..|- .+|++++.+++..+.+++.    +....+..+.   .. .+... ..
T Consensus        67 ~~l~i~pG~~VLDlGaGs-G~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~---~~-~~~~~-~~  140 (227)
T d1g8aa_          67 KNFPIKPGKSVLYLGIAS-GTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDA---TK-PEEYR-AL  140 (227)
T ss_dssp             CCCCCCTTCEEEEETTTS-TTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCT---TC-GGGGT-TT
T ss_pred             cccccCCCCEEEEeccCC-CHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEEC---CC-ccccc-cc
Confidence            456799999999999866 8888899988763 3899999999887776653    2211121111   11 11111 11


Q ss_pred             CCCccEEEEccCCH----HHHHHHHHHhhcCCceEEEE
Q 016507          270 DGGADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       270 ~g~~dvvid~~g~~----~~~~~~~~~l~~~~G~~v~~  303 (388)
                      ...+|+++.-+...    ..+..+.+.|+++ |.++..
T Consensus       141 ~~~vD~i~~d~~~~~~~~~~l~~~~~~Lkpg-G~lvi~  177 (227)
T d1g8aa_         141 VPKVDVIFEDVAQPTQAKILIDNAEVYLKRG-GYGMIA  177 (227)
T ss_dssp             CCCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ccceEEEEEEccccchHHHHHHHHHHhcccC-CeEEEE
Confidence            12788887655432    2367888899997 987754

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.79  E-value=0.04  Score=40.43  Aligned_cols=43  Identities=21%  Similarity=0.139  Sum_probs=37.3

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +.+.....++.+|+|+|+|.+|+-++..++..|. +|..+.+.+
T Consensus        13 ~~~~l~~~~~~~vvVvGgG~ig~E~A~~l~~~g~-~vt~i~~~~   55 (121)
T d1mo9a2          13 LVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGR-RTVMLVRTE   55 (121)
T ss_dssp             HHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSC
T ss_pred             HHHHHhhCCCCEEEEECCCHHHHHHHHHHHhcch-hheEeeccc
Confidence            4556677789999999999999999999999998 899988765

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.021  Score=41.57  Aligned_cols=69  Identities=17%  Similarity=0.299  Sum_probs=45.7

Q ss_pred             CCCC-CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCC-CccE
Q 016507          199 VEVG-STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDG-GADY  275 (388)
Q Consensus       199 ~~~~-~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g-~~dv  275 (388)
                      +.++ .+|.|+|+|.+|.+.++.|+.+|+ ++++.+.+++-.  +.+....++ .++++      .+.+.++... ++|+
T Consensus         7 ~~~~~~kigIlGgGQL~rMla~aA~~lG~-~v~v~d~~~~~P--A~~va~~~i~~~~~d------~~~l~~~~~~~~~Dv   77 (111)
T d1kjqa2           7 LRPAATRVMLLGSGELGKEVAIECQRLGV-EVIAVDRYADAP--AMHVAHRSHVINMLD------GDALRRVVELEKPHY   77 (111)
T ss_dssp             TSTTCCEEEEESCSHHHHHHHHHHHTTTC-EEEEEESSTTCG--GGGGSSEEEECCTTC------HHHHHHHHHHHCCSE
T ss_pred             CCCCCCEEEEEeCCHHHHHHHHHHHHCCC-EEEEEcCCCCCc--hhhcCCeEEECCCCC------HHHHHHHHHhhCCce
Confidence            3444 469999999999999999999999 999998776532  223333333 33333      2334333322 6788


Q ss_pred             E
Q 016507          276 C  276 (388)
Q Consensus       276 v  276 (388)
                      |
T Consensus        78 i   78 (111)
T d1kjqa2          78 I   78 (111)
T ss_dssp             E
T ss_pred             E
Confidence            8

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.72  E-value=0.021  Score=45.46  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=33.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ...+.+|+|+|+|+.|+.|+..+...|+ +|+.++..+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~-~Vtl~E~~~   76 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGH-QVTLFDAHS   76 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhcc-ceEEEeccC
Confidence            4556899999999999999999999999 999998765

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.70  E-value=0.018  Score=48.29  Aligned_cols=35  Identities=17%  Similarity=0.122  Sum_probs=31.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ..++|+|+|+|+.|++++..+...|+ +|+++++++
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~-~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGV-DVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            46799999999999999999988999 999998754

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.64  E-value=0.096  Score=43.43  Aligned_cols=96  Identities=18%  Similarity=0.290  Sum_probs=65.0

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCc-EEEcCCCCCCccHHHHHHh
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-EFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~-~v~~~~~~~~~~~~~~i~~  267 (388)
                      ++......++.+||=+|.|. |..+..+++ .|+ +|++++.+++-++.+++.    +.. .++..+-          .+
T Consensus        33 ~~~~~~~~~~~~iLDiGcGt-G~~~~~l~~-~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~----------~~   99 (251)
T d1wzna1          33 IFKEDAKREVRRVLDLACGT-GIPTLELAE-RGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDV----------LE   99 (251)
T ss_dssp             HHHHTCSSCCCEEEEETCTT-CHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCG----------GG
T ss_pred             HHHHhcCCCCCEEEEeCCCC-Cccchhhcc-cce-EEEEEeeccccccccccccccccccchheehhh----------hh
Confidence            45555677788999999876 777887777 578 899999999888877653    322 2232211          12


Q ss_pred             hcC-CCccEEEEccCC------H---HHHHHHHHHhhcCCceEEE
Q 016507          268 MTD-GGADYCFECVGL------A---SLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       268 ~~~-g~~dvvid~~g~------~---~~~~~~~~~l~~~~G~~v~  302 (388)
                      +.. +.||+|+...+.      .   ..++.+.+.|+++ |.++.
T Consensus       100 l~~~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkpg-G~lii  143 (251)
T d1wzna1         100 IAFKNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPG-GVFIT  143 (251)
T ss_dssp             CCCCSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEE-EEEEE
T ss_pred             cccccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCC-cEEEE
Confidence            222 379999865332      1   3477899999997 98865

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.59  E-value=0.17  Score=45.27  Aligned_cols=106  Identities=19%  Similarity=0.249  Sum_probs=68.2

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc---------------CCcEEEcCCCCC
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF---------------GVTEFVNSKNCG  257 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l---------------ga~~v~~~~~~~  257 (388)
                      +++..++++|++||=+|.|. |..++++|+..|+.+|++++.++...+.++..               +........+..
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~-G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~  286 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGV-GNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFV  286 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTT-SHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCST
T ss_pred             HHHHhCCCCCCEEEeCCCCC-cHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechh
Confidence            66888999999988888755 89999999999877899999999877766532               111111111100


Q ss_pred             CccHHHHHHhhcCCCccEEEEcc--CC---HHHHHHHHHHhhcCCceEEEEc
Q 016507          258 DKSVSQIIIDMTDGGADYCFECV--GL---ASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~--g~---~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ..+.....  +  ..+|+|+-..  -.   ...+.++++.|++| |+++..-
T Consensus       287 ~~~~~d~~--~--~~adVV~inn~~f~~~l~~~L~ei~r~LKPG-GrIVs~~  333 (406)
T d1u2za_         287 DNNRVAEL--I--PQCDVILVNNFLFDEDLNKKVEKILQTAKVG-CKIISLK  333 (406)
T ss_dssp             TCHHHHHH--G--GGCSEEEECCTTCCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             hccccccc--c--ccceEEEEecccCchHHHHHHHHHHHhcCCC-cEEEEec
Confidence            11121111  1  1577886421  12   23367888899998 9998753

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.56  E-value=0.21  Score=39.08  Aligned_cols=96  Identities=18%  Similarity=0.154  Sum_probs=62.0

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEEEEc-CCc-hHHHHHHHcCCcEEEcCCCCCCccHHHHHHhh----------cC
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVD-VIS-EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDM----------TD  270 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~-~~~-~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~----------~~  270 (388)
                      +|.|.|.|-+|...+..+... .. +++++- .++ .....+...+.+......    ... ....+.          ..
T Consensus         4 rIaINGfGRIGR~v~Ral~~~~di-eiVaINd~~~~~~~~~l~~~~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~   77 (172)
T d2czca2           4 KVGVNGYGTIGKRVAYAVTKQDDM-ELIGITKTKPDFEAYRAKELGIPVYAASE----EFI-PRFEKEGFEVAGTLNDLL   77 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEEESSCSHHHHHHHHTTCCEEESSG----GGH-HHHHHHTCCCSCBHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCc-eEEEEecCCChHHHHHhhhcCceeecccc----cce-eeecccCccccchhhhhh
Confidence            689999999999888877543 35 566553 333 344556666654332111    111 111110          01


Q ss_pred             CCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          271 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       271 g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .++|+|+||+|.-...+.+-..+..+ -+.|.++..
T Consensus        78 ~~vDvViEcTG~f~~~~~~~~hl~~G-~k~Vi~s~~  112 (172)
T d2czca2          78 EKVDIIVDATPGGIGAKNKPLYEKAG-VKAIFQGGE  112 (172)
T ss_dssp             TTCSEEEECCSTTHHHHHHHHHHHHT-CEEEECTTS
T ss_pred             ccCCEEEECCCCCCCHHHHHHHHHcC-CCEEEECCC
Confidence            27999999999887788888999997 888888764

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=94.52  E-value=0.74  Score=35.84  Aligned_cols=132  Identities=12%  Similarity=0.011  Sum_probs=78.4

Q ss_pred             EEEEEccchhHHH-HHHHHHHcCCc-EEEE-EcCCchHHHH-HHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          204 TVVIFGLGSIGLA-VAEGARLCGAT-RIIG-VDVISEKFEI-GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       204 ~VlI~Gag~vG~~-ai~la~~~g~~-~Vi~-~~~~~~~~~~-~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +|.|+|.|.+|.- .+...+..+-. ++++ .++++++.+. .++++...+++       ++.+.+..   ..+|+|+-|
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~-------~~~ell~~---~~id~v~I~   74 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFD-------SYEELLES---GLVDAVDLT   74 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEES-------CHHHHHHS---SCCSEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceee-------eeeccccc---cccceeecc
Confidence            6889999999964 46666654321 5554 4666666554 45678766652       34444332   279999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHH------H-hcCcEEEEeeecCCC-ccCcHHHHHHHHhCCC
Q 016507          280 VGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEV------L-HSGKILMGSLFGGLK-AKSDIPILLKRYMDKE  351 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~------~-~~~~~i~g~~~~~~~-~~~~~~~~~~~~~~~~  351 (388)
                      +......+.+..++..  |.=+.+.     .++..+...+      . .++..+.-.....+. ....+.++.+++.+|+
T Consensus        75 tp~~~h~~~~~~al~~--gk~V~~E-----KPl~~~~~e~~~l~~~~~~~~~~~~v~~~~R~~~~~~~~~~~~~~i~~G~  147 (181)
T d1zh8a1          75 LPVELNLPFIEKALRK--GVHVICE-----KPISTDVETGKKVVELSEKSEKTVYIAENFRENSYQKEFEDFYQVVAEGK  147 (181)
T ss_dssp             CCGGGHHHHHHHHHHT--TCEEEEE-----SSSSSSHHHHHHHHHHHHHCSSCEEEECGGGCCHHHHHHHHHHHHHHSCC
T ss_pred             cccccccccccccccc--chhhhcC-----CCCcCCHHHHHHHHHHHHHhCCeEEEEeeccccccCHHHHHHHHHHHCCC
Confidence            9888768888888876  5545553     3444444432      2 234443222111111 1245778888999986


Q ss_pred             C
Q 016507          352 L  352 (388)
Q Consensus       352 ~  352 (388)
                      +
T Consensus       148 i  148 (181)
T d1zh8a1         148 P  148 (181)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=94.44  E-value=0.066  Score=45.09  Aligned_cols=83  Identities=17%  Similarity=0.230  Sum_probs=52.6

Q ss_pred             CCCCCCEEEEEcc-c--hhHHHHHHHHHHcCCcEEEEEcCCchHH-H-HHHHcCCcE---EEcCCCC-CCccHHHHHHhh
Q 016507          198 NVEVGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISEKF-E-IGKRFGVTE---FVNSKNC-GDKSVSQIIIDM  268 (388)
Q Consensus       198 ~~~~~~~VlI~Ga-g--~vG~~ai~la~~~g~~~Vi~~~~~~~~~-~-~~~~lga~~---v~~~~~~-~~~~~~~~i~~~  268 (388)
                      ++-.|.++||+|+ |  ++|.+.++-+...|+ +|+.+.+++++. + ..+.++...   ..|-.+. +...+.+.+.+.
T Consensus         2 ~~l~gK~~lItGaag~~GIG~aiA~~la~~Ga-~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~   80 (268)
T d2h7ma1           2 GLLDGKRILVSGIITDSSIAFHIARVAQEQGA-QLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEA   80 (268)
T ss_dssp             CTTTTCEEEECCCSSTTCHHHHHHHHHHHTTC-EEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhc
Confidence            3457889999985 4  599999988889999 899998887764 3 333455422   2233220 011233334433


Q ss_pred             cCC--CccEEEEccC
Q 016507          269 TDG--GADYCFECVG  281 (388)
Q Consensus       269 ~~g--~~dvvid~~g  281 (388)
                      ...  ..|+++.+.+
T Consensus        81 ~~~~~~ld~~i~~ag   95 (268)
T d2h7ma1          81 IGAGNKLDGVVHSIG   95 (268)
T ss_dssp             HCTTCCEEEEEECCC
T ss_pred             cccCCCcceeeeccc
Confidence            332  6899999887

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=94.41  E-value=0.031  Score=49.16  Aligned_cols=47  Identities=23%  Similarity=0.253  Sum_probs=38.9

Q ss_pred             cCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          197 ANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       197 ~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      .-+++|.+|||+|+ |-+|...++.+...|+ +|+++.++.++.+.++.
T Consensus         6 ~~~~~gk~VlVTG~sGfIGs~l~~~Ll~~G~-~V~~~vR~~~~~~~~~~   53 (342)
T d1y1pa1           6 AVLPEGSLVLVTGANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQK   53 (342)
T ss_dssp             CSSCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH
T ss_pred             CCCCCcCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCchhHHHHHH
Confidence            34678999999987 9999999988888899 99999888877665543

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.033  Score=46.05  Aligned_cols=107  Identities=12%  Similarity=0.018  Sum_probs=66.2

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC-c------------EEEcCCCCCC--
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-T------------EFVNSKNCGD--  258 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga-~------------~v~~~~~~~~--  258 (388)
                      .+...+.++.+||..|.|. |..+..+|+ .|+ +|++++.|++-.+.+++... .            ..........  
T Consensus        38 ~~~l~~~~~~rvLd~GCG~-G~~a~~LA~-~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  114 (229)
T d2bzga1          38 DTFLKGKSGLRVFFPLCGK-AVEMKWFAD-RGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISL  114 (229)
T ss_dssp             HHHHTTCCSCEEEETTCTT-CTHHHHHHH-TTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEE
T ss_pred             HHhcCCCCCCEEEEeCCCC-cHHHHHHHh-CCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEE
Confidence            3455678999999998765 777777776 599 99999999988877665211 1            0100000000  


Q ss_pred             --ccHHHHHHhhcCCCccEEEEccCC--------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          259 --KSVSQIIIDMTDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       259 --~~~~~~i~~~~~g~~dvvid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                        .++.+ +.....+.+|+|+++..-        ...+..+.++|+++ |+++....
T Consensus       115 ~~~d~~~-l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkpg-G~~~l~~~  169 (229)
T d2bzga1         115 YCCSIFD-LPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKK-FQYLLCVL  169 (229)
T ss_dssp             EESCGGG-GGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             EEcchhh-ccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCc-ceEEEEEc
Confidence              01100 111112379999986532        13367899999998 98776654

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=94.33  E-value=0.023  Score=48.17  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=28.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +|||+|+ |-+|..++..++..|+ +|+++++.+
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~-~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNV-EVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSE-EEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC-EEEEeechh
Confidence            5899997 9999999999999999 899997653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=94.29  E-value=0.051  Score=47.74  Aligned_cols=75  Identities=13%  Similarity=0.212  Sum_probs=49.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHH-HHHHc----CCcEEE-cCCCCCCccHHHHHHhhcCC-C
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFE-IGKRF----GVTEFV-NSKNCGDKSVSQIIIDMTDG-G  272 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~-~~~~l----ga~~v~-~~~~~~~~~~~~~i~~~~~g-~  272 (388)
                      ++.+|||+|+ |-+|...++.+...|+ +|+++++.+.+.. +++..    +...+. |-.+   .   +.+.+...+ .
T Consensus         7 ~~KkILVTG~tGfIGs~lv~~Ll~~g~-~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d---~---~~l~~~~~~~~   79 (356)
T d1rkxa_           7 QGKRVFVTGHTGFKGGWLSLWLQTMGA-TVKGYSLTAPTVPSLFETARVADGMQSEIGDIRD---Q---NKLLESIREFQ   79 (356)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTC---H---HHHHHHHHHHC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCCCccHHHHhhhhcccCCeEEEeeccC---h---Hhhhhhhhhch
Confidence            4689999997 9999999999999999 8999988765432 22221    233222 2222   2   222233333 7


Q ss_pred             ccEEEEccCC
Q 016507          273 ADYCFECVGL  282 (388)
Q Consensus       273 ~dvvid~~g~  282 (388)
                      +|+|+.+++.
T Consensus        80 ~~~v~~~aa~   89 (356)
T d1rkxa_          80 PEIVFHMAAQ   89 (356)
T ss_dssp             CSEEEECCSC
T ss_pred             hhhhhhhhcc
Confidence            8999998874

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.20  E-value=0.088  Score=43.47  Aligned_cols=102  Identities=12%  Similarity=0.124  Sum_probs=63.3

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCcEEEcCCCCCCccHHHHHHhhcC
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      +...++||++||=+|+|. |..+..+++...-.+|++++.+++..+.++..    +....+..+.   .... ..... .
T Consensus        68 ~~l~ikpG~~VLDlGcGs-G~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~---~~~~-~~~~~-~  141 (230)
T d1g8sa_          68 KVMPIKRDSKILYLGASA-GTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA---NKPQ-EYANI-V  141 (230)
T ss_dssp             CCCCCCTTCEEEEESCCS-SHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCT---TCGG-GGTTT-C
T ss_pred             HhCCCCCCCEEEEeCEEc-CHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEee---ccCc-ccccc-c
Confidence            456789999999999865 77777888765444999999999887776653    2112222221   1111 11111 1


Q ss_pred             CCccEEEEccCCH----HHHHHHHHHhhcCCceEEEE
Q 016507          271 GGADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       271 g~~dvvid~~g~~----~~~~~~~~~l~~~~G~~v~~  303 (388)
                      ..+|+++......    ..+..+.+.|+++ |.++..
T Consensus       142 ~~v~~i~~~~~~~~~~~~~l~~~~r~LKpg-G~~~i~  177 (230)
T d1g8sa_         142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKG-GYGMIA  177 (230)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ceeEEeeccccchHHHHHHHHHHHHhcccC-ceEEEE
Confidence            1456666655422    3367788889997 887755

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.19  E-value=0.11  Score=42.09  Aligned_cols=101  Identities=14%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHhhcCC
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      ...++||++||=+|+|+ |..+..+++..+-.+|++++.+++..+.+++    .+-...+..+. ......    .....
T Consensus        51 ~l~lkpg~~VLDlGcG~-G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~-~~~~~~----~~~~~  124 (209)
T d1nt2a_          51 RLKLRGDERVLYLGAAS-GTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDA-SKPWKY----SGIVE  124 (209)
T ss_dssp             CCCCCSSCEEEEETCTT-SHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCT-TCGGGT----TTTCC
T ss_pred             cCCCCCCCEEEEeCCcC-CHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeec-cCcccc----ccccc
Confidence            46789999999999865 6677778887765599999999987776654    33222222111 001110    01111


Q ss_pred             CccEEEEccCCH----HHHHHHHHHhhcCCceEEEE
Q 016507          272 GADYCFECVGLA----SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       272 ~~dvvid~~g~~----~~~~~~~~~l~~~~G~~v~~  303 (388)
                      .+|+++......    ..+..+.+.|+++ |.++..
T Consensus       125 ~vd~v~~~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  159 (209)
T d1nt2a_         125 KVDLIYQDIAQKNQIEILKANAEFFLKEK-GEVVIM  159 (209)
T ss_dssp             CEEEEEECCCSTTHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             eEEEEEecccChhhHHHHHHHHHHHhccC-CeEEEE
Confidence            677777654322    2367788999997 988765

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.05  E-value=0.045  Score=47.92  Aligned_cols=101  Identities=19%  Similarity=0.164  Sum_probs=62.8

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHHHhhc
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      ..+++|++||=.++|. |..++.+++. |+.+|++++.+++..+++++    .|..   +++.      .+..+.+..+.
T Consensus       141 ~~~~~g~~VLDl~~g~-G~~si~~a~~-ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~------~d~~~~~~~~~  212 (324)
T d2as0a2         141 KWVQPGDRVLDVFTYT-GGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIV------GSAFEEMEKLQ  212 (324)
T ss_dssp             GGCCTTCEEEETTCTT-THHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEE------SCHHHHHHHHH
T ss_pred             hhcCCCCeeecccCcc-cchhhhhhhc-CCcEEEeecCCHHHHHHHHHHHHHcCCCccceeee------chhhhhhHHHH
Confidence            3467899998886533 3344444443 77799999999998887764    4542   2222      23333333332


Q ss_pred             --CCCccEEEEccCC---------------HHHHHHHHHHhhcCCceEEEEccC
Q 016507          270 --DGGADYCFECVGL---------------ASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       270 --~g~~dvvid~~g~---------------~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                        ++.||+|+---+.               ...+..++++++++ |.++.+..+
T Consensus       213 ~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pG-G~lv~~s~s  265 (324)
T d2as0a2         213 KKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDG-GILVTCSCS  265 (324)
T ss_dssp             HTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEE-EEEEEEECC
T ss_pred             hccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCC-cEEEEEeCC
Confidence              2389999752221               12366778899997 988887653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=94.05  E-value=0.066  Score=44.58  Aligned_cols=101  Identities=16%  Similarity=0.147  Sum_probs=61.6

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCc------EEEEEcCCchHHHHHH----HcCCcEE---EcCCCCCCccHHHHHHhhc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGAT------RIIGVDVISEKFEIGK----RFGVTEF---VNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~------~Vi~~~~~~~~~~~~~----~lga~~v---~~~~~~~~~~~~~~i~~~~  269 (388)
                      .|||+|+ +++|.+.++.+...|++      .|+..++++++.+.+.    +.|....   .|-.+  .++..+.+.+..
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~--~~~v~~~~~~~~   80 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISD--MADVRRLTTHIV   80 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTS--HHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC--HHHHHHHHHHHH
Confidence            4688887 99999988888777883      3888888887765443    2344321   23333  122222222221


Q ss_pred             --CCCccEEEEccCCH-------------------------HHHHHHHHHhhc-CCceEEEEccC
Q 016507          270 --DGGADYCFECVGLA-------------------------SLVQEAYACCRK-GWGKTIVLGVD  306 (388)
Q Consensus       270 --~g~~dvvid~~g~~-------------------------~~~~~~~~~l~~-~~G~~v~~g~~  306 (388)
                        -|+.|+++++.|..                         ...+.++..|.. ++|+++.++..
T Consensus        81 ~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~  145 (240)
T d2bd0a1          81 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSV  145 (240)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCG
T ss_pred             HHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEech
Confidence              23799999988742                         223445555532 23899988764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.95  E-value=0.093  Score=42.57  Aligned_cols=94  Identities=17%  Similarity=0.250  Sum_probs=61.5

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-EEEcCCCCCCccHHHHHHhhcCCC
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      -++++++||-+|.|. |..+..+++. |+ +|+++|.+++..+.+++    .+.. ..+..+.   .++     .+..+.
T Consensus        34 ~l~~~~~ILDiGcG~-G~~~~~la~~-~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~---~~l-----~~~~~~  102 (226)
T d1ve3a1          34 YMKKRGKVLDLACGV-GGFSFLLEDY-GF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDA---RKL-----SFEDKT  102 (226)
T ss_dssp             SCCSCCEEEEETCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCT---TSC-----CSCTTC
T ss_pred             hcCCCCEEEEECCCc-chhhhhHhhh-hc-ccccccccccchhhhhhhhcccccccccccccc---ccc-----cccCcC
Confidence            367889999999866 7777788874 77 89999999988877764    2321 1222111   111     112237


Q ss_pred             ccEEEEccCC------H--HHHHHHHHHhhcCCceEEEE
Q 016507          273 ADYCFECVGL------A--SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       273 ~dvvid~~g~------~--~~~~~~~~~l~~~~G~~v~~  303 (388)
                      ||+|+-...-      +  ..+..+.+.|++| |+++..
T Consensus       103 fD~I~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~lii~  140 (226)
T d1ve3a1         103 FDYVIFIDSIVHFEPLELNQVFKEVRRVLKPS-GKFIMY  140 (226)
T ss_dssp             EEEEEEESCGGGCCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             ceEEEEecchhhCChhHHHHHHHHHHHHcCcC-cEEEEE
Confidence            9998764331      1  2377889999997 998654

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.09  Score=45.91  Aligned_cols=72  Identities=21%  Similarity=0.256  Sum_probs=44.8

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc----hHHHHHHHc---CCcEE-EcCCCCCCccHHHHHHhhcCCCcc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIGKRF---GVTEF-VNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~----~~~~~~~~l---ga~~v-~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      +|||+|+ |-+|...+..+...|+ +|+++++..    ........+   .+..+ .|-.+  ...+.+.+++.   ++|
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~l~~~~~~~---~~d   75 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGH-DVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN--EALMTEILHDH---AID   75 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTC--HHHHHHHHHHT---TCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCC--HHHHHHHHhcc---CCC
Confidence            5999987 9999999999988898 899986521    222222222   33322 22222  12333333333   899


Q ss_pred             EEEEccC
Q 016507          275 YCFECVG  281 (388)
Q Consensus       275 vvid~~g  281 (388)
                      +||++.+
T Consensus        76 ~ViHlAa   82 (338)
T d1udca_          76 TVIHFAG   82 (338)
T ss_dssp             EEEECCS
T ss_pred             EEEECCC
Confidence            9999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=93.93  E-value=0.027  Score=48.02  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=30.5

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +.+|+|+|+|+.|++++..++..|+ +|.+++.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~-~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGL-NVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSC-EEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            5789999999999999999999999 999998654

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.90  E-value=0.099  Score=44.76  Aligned_cols=98  Identities=17%  Similarity=0.193  Sum_probs=66.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC----------cEEEcCCCCCCccHHHHHHhhc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----------TEFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga----------~~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      ...++|||+|+|. |..+-.++++.+..+|.+++.+++-.+.++++-.          -.++.      ++-.+.+++..
T Consensus        79 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~------~Da~~~l~~~~  151 (290)
T d1xj5a_          79 PNPKKVLVIGGGD-GGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVI------GDGVAFLKNAA  151 (290)
T ss_dssp             SCCCEEEEETCSS-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEE------SCHHHHHHTSC
T ss_pred             CCCcceEEecCCc-hHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEE------ccHHHHHhhcc
Confidence            4557999998755 5555677888777699999999988888876421          11222      23345555544


Q ss_pred             CCCccEEE-EccC---------CHHHHHHHHHHhhcCCceEEEEcc
Q 016507          270 DGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       270 ~g~~dvvi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .+.||+|| |+..         +..-.+.+.++|+++ |.++.-..
T Consensus       152 ~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~  196 (290)
T d1xj5a_         152 EGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPG-GVVCTQAE  196 (290)
T ss_dssp             TTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             ccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCC-cEEEEecC
Confidence            44899885 4332         234478899999997 98887654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.88  E-value=0.015  Score=43.10  Aligned_cols=37  Identities=24%  Similarity=0.257  Sum_probs=32.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      ..+.+|+|+|+|.+|+-++..+...|. +|..+.+.+.
T Consensus        30 ~~~~~vvIiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~~   66 (122)
T d1xhca2          30 ENSGEAIIIGGGFIGLELAGNLAEAGY-HVKLIHRGAM   66 (122)
T ss_dssp             HHHSEEEEEECSHHHHHHHHHHHHTTC-EEEEECSSSC
T ss_pred             hcCCcEEEECCcHHHHHHHHHhhcccc-eEEEEecccc
Confidence            345789999999999999999999999 8999987653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.84  E-value=0.026  Score=48.56  Aligned_cols=99  Identities=13%  Similarity=0.097  Sum_probs=62.5

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCc-----EEEcCCCCCCccHHHHH
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVT-----EFVNSKNCGDKSVSQII  265 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~-----~v~~~~~~~~~~~~~~i  265 (388)
                      ...+.+++.+||=+|.|. |..++.+++. |+ +|++++.+++-++.+++.    +..     ..+..     .++...-
T Consensus        50 ~~l~~~~~~~vLD~GcG~-G~~~~~la~~-g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~-----~~~~~~~  121 (292)
T d1xvaa_          50 GLLRQHGCHRVLDVACGT-GVDSIMLVEE-GF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEE-----ANWLTLD  121 (292)
T ss_dssp             HHHHHTTCCEEEESSCTT-SHHHHHHHHT-TC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEE-----CCGGGHH
T ss_pred             HHhhhcCCCEEEEecCCC-cHHHHHHHHc-CC-eeeeccCchHHHHHHHHHHHhcccccccceeeeee-----ccccccc
Confidence            444556778999988755 7777788875 88 899999999887776542    111     11111     1111111


Q ss_pred             HhhcCC-CccEEEEccCC--------------HHHHHHHHHHhhcCCceEEE
Q 016507          266 IDMTDG-GADYCFECVGL--------------ASLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       266 ~~~~~g-~~dvvid~~g~--------------~~~~~~~~~~l~~~~G~~v~  302 (388)
                      .....+ .||.|+.....              ...+..+.+.|+++ |.++.
T Consensus       122 ~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~li~  172 (292)
T d1xvaa_         122 KDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPG-GLLVI  172 (292)
T ss_dssp             HHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEE-EEEEE
T ss_pred             cccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcC-cEEEE
Confidence            222223 89999864321              12478999999997 98875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.84  E-value=0.031  Score=37.59  Aligned_cols=36  Identities=19%  Similarity=0.318  Sum_probs=31.3

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      .+|.|+|+|..|.+.++.++.+|+ ++++++.+++-.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~-~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGI-AVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTE-EEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCC-EEEEEcCCCCCc
Confidence            378999999999999999999999 899998765443

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.83  E-value=0.2  Score=34.91  Aligned_cols=72  Identities=17%  Similarity=0.228  Sum_probs=50.5

Q ss_pred             CCCCCEEEEEccchhHHHH-HHHHHHcCCcEEEEEcCCc-hHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEE
Q 016507          199 VEVGSTVVIFGLGSIGLAV-AEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~a-i~la~~~g~~~Vi~~~~~~-~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .....+|.++|-|++|+.+ +++++..|+ .|.+.|... ...+.+++.|+.....++.   ..+         .++|+|
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~---~~i---------~~~d~v   71 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVTQRLAQAGAKIYIGHAE---EHI---------EGASVV   71 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHHHHHHHTTCEEEESCCG---GGG---------TTCSEE
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhhhHHHHCCCeEEECCcc---ccC---------CCCCEE
Confidence            4456789999998889887 789999999 999999864 3455667788864443332   111         167888


Q ss_pred             EEccCCH
Q 016507          277 FECVGLA  283 (388)
Q Consensus       277 id~~g~~  283 (388)
                      +-..+.+
T Consensus        72 V~S~AI~   78 (96)
T d1p3da1          72 VVSSAIK   78 (96)
T ss_dssp             EECTTSC
T ss_pred             EECCCcC
Confidence            7766543

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.053  Score=43.51  Aligned_cols=40  Identities=25%  Similarity=0.369  Sum_probs=34.8

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~  243 (388)
                      .+|.|+|+|.+|...++++...|+ +|+..+.+++.++.++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~   44 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSK   44 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHH
Confidence            589999999999999999999999 9999999987665443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.80  E-value=0.054  Score=39.59  Aligned_cols=38  Identities=16%  Similarity=0.140  Sum_probs=33.1

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .++..++|+|+|+|.+|+-++..+..+|. +|..+.+.+
T Consensus        18 ~l~~p~~v~IiGgG~iG~E~A~~l~~~g~-~Vtlv~~~~   55 (117)
T d1onfa2          18 NIKESKKIGIVGSGYIAVELINVIKRLGI-DSYIFARGN   55 (117)
T ss_dssp             TCCCCSEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSS
T ss_pred             ccCCCCEEEEECCchHHHHHHHHHHhccc-cceeeehhc
Confidence            44556899999999999999999999999 999998754

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.75  E-value=0.27  Score=42.76  Aligned_cols=104  Identities=14%  Similarity=0.135  Sum_probs=67.7

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-----------CCc----EEEcCCCCC
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----------GVT----EFVNSKNCG  257 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-----------ga~----~v~~~~~~~  257 (388)
                      +++..+++++++||=+|.|. |..++++|+..++.++++++.++...+.+++.           |..    .++. .+..
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~-G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~-gd~~  220 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGV-GQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLER-GDFL  220 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTT-SHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEE-CCTT
T ss_pred             HHHHcCCCCCCEEEEcCCCC-CHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEE-Cccc
Confidence            56788999999998888755 88888999998987899999999777665431           211    1222 1211


Q ss_pred             CccHHHHHHhhcCCCccEEEEccC--CH---HHHHHHHHHhhcCCceEEEEc
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVG--LA---SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g--~~---~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ...+.+.+.     .+|+|+-..-  .+   ..+.+.++.|++| |+++..-
T Consensus       221 ~~~~~~~~~-----~advi~~~~~~f~~~~~~~l~e~~r~LKpG-g~iv~~~  266 (328)
T d1nw3a_         221 SEEWRERIA-----NTSVIFVNNFAFGPEVDHQLKERFANMKEG-GRIVSSK  266 (328)
T ss_dssp             SHHHHHHHH-----HCSEEEECCTTTCHHHHHHHHHHHTTCCTT-CEEEESS
T ss_pred             ccccccccC-----cceEEEEcceecchHHHHHHHHHHHhCCCC-cEEEEec
Confidence            123333221     3578874211  22   3366788889998 9998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.72  E-value=0.08  Score=38.97  Aligned_cols=43  Identities=23%  Similarity=0.358  Sum_probs=35.2

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +.+......+.+|+|+|+|.+|+-++..+..+|. +|.++.+.+
T Consensus        21 i~~~~~~~~~k~vvViGgG~iG~E~A~~l~~~g~-~Vtlie~~~   63 (123)
T d1nhpa2          21 LKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGK-KVTVIDILD   63 (123)
T ss_dssp             HHHHHTCTTCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             HHHHhhccCCCEEEEECChHHHHHHHHHhhccce-EEEEEEecC
Confidence            3344445567899999999999999999999999 899997754

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.63  E-value=0.065  Score=47.90  Aligned_cols=31  Identities=32%  Similarity=0.302  Sum_probs=27.6

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~  233 (388)
                      |.+|||+|+ |-+|..++..+...|+ +|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~-~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNY-EVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEe
Confidence            678999997 9999999999988999 999986

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.63  E-value=0.33  Score=36.18  Aligned_cols=28  Identities=14%  Similarity=0.266  Sum_probs=21.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHH-cCCcEEEEE
Q 016507          204 TVVIFGL-GSIGLAVAEGARL-CGATRIIGV  232 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~-~g~~~Vi~~  232 (388)
                      +|.|.|+ |-+|...++.... .++ ++++.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~-~l~~~   30 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDL-TLSAE   30 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTS-EEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCC-EEEEE
Confidence            5899997 9999998887664 556 55443

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=93.55  E-value=0.46  Score=36.90  Aligned_cols=95  Identities=22%  Similarity=0.282  Sum_probs=59.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcC-CcEEEEEcC-Cc-hHHHHHHHcCCcEEEcCCCC---------C-CccHHHHHHhhcC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVDV-IS-EKFEIGKRFGVTEFVNSKNC---------G-DKSVSQIIIDMTD  270 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~-~~-~~~~~~~~lga~~v~~~~~~---------~-~~~~~~~i~~~~~  270 (388)
                      +|.|.|.|-+|..+++++...+ . +++++.. ++ .....+..++.+......+.         . ...+....     
T Consensus         3 ~VgINGfGRIGR~v~R~l~~~~di-~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~-----   76 (171)
T d1cf2o1           3 AVAINGYGTVGKRVADAIAQQDDM-KVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDML-----   76 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSSSE-EEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHH-----
T ss_pred             EEEEEcCcHHHHHHHHHHHhCCCc-eEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhh-----
Confidence            6899999999999998776554 4 6666532 22 33445555565543221110         0 00111110     


Q ss_pred             CCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          271 GGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       271 g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .++|+|+||+|.-...+.+-..+..+ -+.+..+.
T Consensus        77 ~~vDvViEcTG~f~~~~~~~~hl~~G-~K~vi~~~  110 (171)
T d1cf2o1          77 DEADIVIDCTPEGIGAKNLKMYKEKG-IKAIFQGG  110 (171)
T ss_dssp             HTCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTT
T ss_pred             cCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEECC
Confidence            17999999999877678888888886 77777765

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.53  E-value=0.19  Score=39.55  Aligned_cols=95  Identities=20%  Similarity=0.235  Sum_probs=57.2

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEEEEc-CCch-HHHHHHHcCCcEEEcCCC--------CC-CccHHHHHHhhcCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVD-VISE-KFEIGKRFGVTEFVNSKN--------CG-DKSVSQIIIDMTDG  271 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~-~~~~-~~~~~~~lga~~v~~~~~--------~~-~~~~~~~i~~~~~g  271 (388)
                      +|.|.|.|-+|..+++.+... .. +++++. ..+. ....+...+.......+.        .. ...+...+     .
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~di-evVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~-----~   76 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDM-KLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLI-----K   76 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTE-EEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHH-----H
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCC-EEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhh-----h
Confidence            689999999999999988754 45 677763 3332 333333333322211110        00 01111111     1


Q ss_pred             CccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          272 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       272 ~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ++|+|+||+|.-...+.+-.++..+ -+++..+.
T Consensus        77 ~vDiViecTG~f~~~e~a~~hl~~G-~KvIi~~~  109 (178)
T d1b7go1          77 TSDIVVDTTPNGVGAQYKPIYLQLQ-RNAIFQGG  109 (178)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTT-CEEEECTT
T ss_pred             cCCEEEECCCCcCCHHHHHHHHHcC-CEEEEECC
Confidence            6899999999877677888888775 67777654

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.45  E-value=0.069  Score=46.50  Aligned_cols=32  Identities=22%  Similarity=0.148  Sum_probs=28.8

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .++||+|+ |-+|...+..+...|+ +|+++++.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~-~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGY-EVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcC-EEEEEECC
Confidence            47899998 9999999999988999 99999874

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=93.43  E-value=0.088  Score=42.09  Aligned_cols=90  Identities=17%  Similarity=0.128  Sum_probs=57.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...+++++.+|+ +|++.++.....+.....+...   .     .++.+.+.     ..|+|.-+.
T Consensus        46 ~g~tvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~---~-----~~l~~ll~-----~sD~v~l~~  111 (191)
T d1gdha1          46 DNKTLGIYGFGSIGQALAKRAQGFDM-DIDYFDTHRASSSDEASYQATF---H-----DSLDSLLS-----VSQFFSLNA  111 (191)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSCCCHHHHHHHTCEE---C-----SSHHHHHH-----HCSEEEECC
T ss_pred             cccceEEeecccchHHHHHHHHhhcc-ccccccccccccchhhcccccc---c-----CCHHHHHh-----hCCeEEecC
Confidence            37899999999999999999999999 8999987654333322222211   1     22433333     457776655


Q ss_pred             CCHH-H----HHHHHHHhhcCCceEEEEcc
Q 016507          281 GLAS-L----VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~-~----~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .... +    -...++.++++ ..+|.++.
T Consensus       112 plt~~T~~li~~~~l~~mk~~-a~lIN~sR  140 (191)
T d1gdha1         112 PSTPETRYFFNKATIKSLPQG-AIVVNTAR  140 (191)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTT-EEEEECSC
T ss_pred             CCCchHhheecHHHhhCcCCc-cEEEecCC
Confidence            4321 0    13666677775 66666653

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.37  E-value=0.12  Score=44.99  Aligned_cols=73  Identities=16%  Similarity=0.137  Sum_probs=45.8

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCcEEE-cCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVTEFV-NSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~~v~-~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|||+|+ |-+|..+++.+...|..+|+++++...+.+.+.. -.+..+. |-.+  ...+.+...+    ++|+||.+.
T Consensus         2 KILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~--~~~~~~~~~~----~~d~Vih~a   75 (342)
T d2blla1           2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISI--HSEWIEYHVK----KCDVVLPLV   75 (342)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTT--CSHHHHHHHH----HCSEEEECB
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCC--hHHHHHHHHh----CCCcccccc
Confidence            5999997 9999999887777774389999876554443332 2233222 2112  1233333322    799999988


Q ss_pred             CC
Q 016507          281 GL  282 (388)
Q Consensus       281 g~  282 (388)
                      +.
T Consensus        76 ~~   77 (342)
T d2blla1          76 AI   77 (342)
T ss_dssp             CC
T ss_pred             cc
Confidence            74

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=93.36  E-value=0.19  Score=39.27  Aligned_cols=44  Identities=11%  Similarity=0.097  Sum_probs=37.5

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      .+|-|+|-|.+|...+.-+...|+ +|++.++++++.+.+.+.++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~~~~   46 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGF-VVCAFNRTVSKVDDFLANEA   46 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTC-CEEEECSSTHHHHHHHHTTT
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHHhcc
Confidence            478999999999998887777899 99999999999888766543

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.32  E-value=0.065  Score=39.02  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=31.2

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      .++|+|+|+|.+|+-+++.+..+|. +|..+.+.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGT-KVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeeeccccc-EEEEEEecce
Confidence            4789999999999999999999999 8999977654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=93.24  E-value=0.1  Score=41.57  Aligned_cols=89  Identities=16%  Similarity=0.088  Sum_probs=57.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .+.+|.|+|.|.+|...+++++.+|. +|++.++........+..+....        .++.+.+.     ..|+|.-+.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~~~~~~~~~~--------~~l~~~l~-----~sD~v~~~~  108 (188)
T d2naca1          43 EAMHVGTVAAGRIGLAVLRRLAPFDV-HLHYTDRHRLPESVEKELNLTWH--------ATREDMYP-----VCDVVTLNC  108 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTC-EEEEECSSCCCHHHHHHHTCEEC--------SSHHHHGG-----GCSEEEECS
T ss_pred             cccceeeccccccchhhhhhhhccCc-eEEEEeecccccccccccccccc--------CCHHHHHH-----hccchhhcc
Confidence            57899999999999999999999999 99999886655554444443211        12332221     467776655


Q ss_pred             CCHH-----HHHHHHHHhhcCCceEEEEc
Q 016507          281 GLAS-----LVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       281 g~~~-----~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ....     .-...+..++++ ..+|.++
T Consensus       109 plt~~T~~li~~~~l~~mk~g-a~lIN~a  136 (188)
T d2naca1         109 PLHPETEHMINDETLKLFKRG-AYIVNTA  136 (188)
T ss_dssp             CCCTTTTTCBSHHHHTTSCTT-EEEEECS
T ss_pred             cccccchhhhHHHHHHhCCCC-CEEEecC
Confidence            4321     024566667665 6666554

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=93.22  E-value=0.12  Score=41.24  Aligned_cols=84  Identities=14%  Similarity=0.095  Sum_probs=55.1

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE-----EEcCCCC-CCccHHHHHHhhcCCCccEE
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE-----FVNSKNC-GDKSVSQIIIDMTDGGADYC  276 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~-----v~~~~~~-~~~~~~~~i~~~~~g~~dvv  276 (388)
                      .+|.|+|+|..|.+.+.++-..|. +|...+++++..+.+.+.+-..     +--+++- -..++.+.+.     +.|++
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~-~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~-----~ad~i   81 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCR-EVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYN-----GAEII   81 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEE-EEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHT-----TCSCE
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-eEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccC-----CCCEE
Confidence            379999999999998888877777 8999999988887765432110     0000000 0022344332     67999


Q ss_pred             EEccCCHHHHHHHHHHh
Q 016507          277 FECVGLASLVQEAYACC  293 (388)
Q Consensus       277 id~~g~~~~~~~~~~~l  293 (388)
                      |-++++.. +...++.+
T Consensus        82 iiavPs~~-~~~~~~~~   97 (189)
T d1n1ea2          82 LFVIPTQF-LRGFFEKS   97 (189)
T ss_dssp             EECSCHHH-HHHHHHHH
T ss_pred             EEcCcHHH-HHHHHHHH
Confidence            99998876 66666544

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=93.22  E-value=0.18  Score=41.37  Aligned_cols=103  Identities=16%  Similarity=0.240  Sum_probs=65.3

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHhh--
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIIDM--  268 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~~--  268 (388)
                      ..+.....+||-+|. .+|..++.+|+.+.- .+|+.++.+++..+.+++    .|...-+.-..   .+..+.+.++  
T Consensus        54 L~~~~~~k~iLEiGT-~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~---g~a~~~L~~l~~  129 (227)
T d1susa1          54 LLKLINAKNTMEIGV-YTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE---GPALPVLDEMIK  129 (227)
T ss_dssp             HHHHHTCCEEEEECC-GGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEE---SCHHHHHHHHHH
T ss_pred             HHHhcCCCcEEEecc-hhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeee---hHHHHHHHHHHh
Confidence            344566789999986 347777888877631 299999999988877765    35432111111   2233344443  


Q ss_pred             ---cCCCccEEE-EccCCH--HHHHHHHHHhhcCCceEEEE
Q 016507          269 ---TDGGADYCF-ECVGLA--SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       269 ---~~g~~dvvi-d~~g~~--~~~~~~~~~l~~~~G~~v~~  303 (388)
                         ..+.||.|| |+--..  ..++.+++.++++ |.++.=
T Consensus       130 ~~~~~~~fD~iFiDa~k~~y~~~~e~~~~ll~~g-Giii~D  169 (227)
T d1susa1         130 DEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVG-GVIGYD  169 (227)
T ss_dssp             CGGGTTCBSEEEECSCSTTHHHHHHHHHHHBCTT-CCEEEE
T ss_pred             ccccCCceeEEEeccchhhhHHHHHHHHhhcCCC-cEEEEc
Confidence               234799995 544332  3378999999996 776643

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.20  E-value=0.2  Score=34.40  Aligned_cols=67  Identities=18%  Similarity=0.326  Sum_probs=47.6

Q ss_pred             EEEEEccchhHHHH-HHHHHHcCCcEEEEEcCCc-hHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGLGSIGLAV-AEGARLCGATRIIGVDVIS-EKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Gag~vG~~a-i~la~~~g~~~Vi~~~~~~-~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|-++|-|++|+.+ +++++..|+ .|.+.|..+ +..+.|+++|+.....++.   ..+         .+.|+|+-...
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~-~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~---~~i---------~~~d~vV~SsA   69 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGN-DVYGSNIEETERTAYLRKLGIPIFVPHSA---DNW---------YDPDLVIKTPA   69 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEECSSCCHHHHHHHHTTCCEESSCCT---TSC---------CCCSEEEECTT
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCC-eEEEEeCCCChhHHHHHHCCCeEEeeecc---ccc---------CCCCEEEEecC
Confidence            56777888888865 678899999 999999876 4556788899875443332   222         26788887665


Q ss_pred             CH
Q 016507          282 LA  283 (388)
Q Consensus       282 ~~  283 (388)
                      .+
T Consensus        70 I~   71 (89)
T d1j6ua1          70 VR   71 (89)
T ss_dssp             CC
T ss_pred             cC
Confidence            44

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.15  E-value=0.59  Score=35.24  Aligned_cols=95  Identities=6%  Similarity=-0.039  Sum_probs=59.6

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH-HH---HHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF-EI---GKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~-~~---~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .+.|+|.|.|.+|..+++.+...|. +|++++.++++. +.   +...|...+.-  +   ..-.+.+++..-..+|.++
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~-~v~vId~d~~~~~~~~~~~~~~~~~vi~G--d---~~d~~~L~~a~i~~a~~vi   76 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLGDNADVIPG--D---SNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHCTTCEEEES--C---TTSHHHHHHHTTTTCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCC-CEEEEeccchhHHHHHHHhhcCCcEEEEc--c---CcchHHHHHhccccCCEEE
Confidence            4579999999999999999999998 888888877542 22   22345554432  2   1223344444333789999


Q ss_pred             EccCCHHHH---HHHHHHhhcCCceEEEE
Q 016507          278 ECVGLASLV---QEAYACCRKGWGKTIVL  303 (388)
Q Consensus       278 d~~g~~~~~---~~~~~~l~~~~G~~v~~  303 (388)
                      -+++.+..-   ....+.+.+. -+++..
T Consensus        77 ~~~~~d~~n~~~~~~~r~~~~~-~~iia~  104 (153)
T d1id1a_          77 ALSDNDADNAFVVLSAKDMSSD-VKTVLA  104 (153)
T ss_dssp             ECSSCHHHHHHHHHHHHHHTSS-SCEEEE
T ss_pred             EccccHHHHHHHHHHHHHhCCC-CceEEE
Confidence            998877432   2233344443 455544

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.09  E-value=0.061  Score=44.41  Aligned_cols=37  Identities=22%  Similarity=0.210  Sum_probs=32.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ...+.+|+|+|+|+.|+.++..++..|+ +|.+++.++
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~-~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGY-TVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhcc-ceeeEeecc
Confidence            3467899999999999999999999999 899998765

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.06  E-value=0.54  Score=36.75  Aligned_cols=88  Identities=23%  Similarity=0.229  Sum_probs=59.5

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEEEE-cCCchHHHH-HHHcCCc---EEEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGV-DVISEKFEI-GKRFGVT---EFVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~-~~~~~~~~~-~~~lga~---~v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      +|.|+|.|.+|...++.++.. ++ +|+++ ++++++.+. .++++..   .++       .++.+.+..   ..+|+|+
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~-~i~ai~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ll~~---~~iD~v~   71 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNA-TISGVASRSLEKAKAFATANNYPESTKIH-------GSYESLLED---PEIDALY   71 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTE-EEEEEECSSHHHHHHHHHHTTCCTTCEEE-------SSHHHHHHC---TTCCEEE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCC-EEEEEEeCCccccccchhccccccceeec-------CcHHHhhhc---cccceee
Confidence            588999999999888877765 56 66654 666666443 4555542   233       234443332   2899999


Q ss_pred             EccCCHHHHHHHHHHhhcCCceEEEEc
Q 016507          278 ECVGLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      -|+......+.+..++..  |.=+.+.
T Consensus        72 I~tp~~~h~~~~~~~l~~--g~~v~~E   96 (184)
T d1ydwa1          72 VPLPTSLHVEWAIKAAEK--GKHILLE   96 (184)
T ss_dssp             ECCCGGGHHHHHHHHHTT--TCEEEEC
T ss_pred             ecccchhhcchhhhhhhc--cceeecc
Confidence            999988878888888887  4545553

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.05  E-value=0.27  Score=38.18  Aligned_cols=91  Identities=18%  Similarity=0.218  Sum_probs=56.9

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc--hHHHHHHHc----CC---c---------------EEEcCCCCCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRF----GV---T---------------EFVNSKNCGDK  259 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~--~~~~~~~~l----ga---~---------------~v~~~~~~~~~  259 (388)
                      +|.|.|-|-+|.++.+++...+. +|+++-...  +...++.++    |-   +               .++..++    
T Consensus         2 kigINGfGRIGR~~~R~l~~~~i-~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~----   76 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRILHSRGV-EVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKD----   76 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSS----
T ss_pred             EEEEECCcHHHHHHHHHHhcCCC-EEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCC----
Confidence            58899999999999998877788 677764322  233333332    20   0               1112221    


Q ss_pred             cHHHHHHhhcCC--CccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          260 SVSQIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       260 ~~~~~i~~~~~g--~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                           ..++..+  ++|+|+||+|.-...+.+...+..+ .+-|.+..
T Consensus        77 -----p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSA  118 (168)
T d2g82a1          77 -----PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVIITA  118 (168)
T ss_dssp             -----GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEESS
T ss_pred             -----hHHCcccccCCceeEeccccccchHHhhhhhccc-cceeeecc
Confidence                 1112222  8999999999765567777888876 66666654

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.26  Score=36.12  Aligned_cols=89  Identities=19%  Similarity=0.184  Sum_probs=58.0

Q ss_pred             CCCEEEEEccchh-----------HHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhc
Q 016507          201 VGSTVVIFGLGSI-----------GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       201 ~~~~VlI~Gag~v-----------G~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      .-.+|||+|+|+.           +.-++..+|..|+ +++.+.++++....-..+ +|+++-..= +.+.+.+.+++. 
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~-~~iliN~NP~TVstd~d~-aD~lYfePl-t~e~v~~Ii~~E-   81 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGY-RVINVNSNPATIMTDPEM-ADATYIEPI-HWEVVRKIIEKE-   81 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTC-EEEEECSCTTCGGGCGGG-SSEEECSCC-CHHHHHHHHHHH-
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCC-eEEEecCchHhhhcChhh-cceeeeecC-CHHHHHHHHHHh-
Confidence            3479999998753           4556666677899 899999998876544333 345543211 123333333332 


Q ss_pred             CCCccEEEEccCCHHHHHHHHHHhhc
Q 016507          270 DGGADYCFECVGLASLVQEAYACCRK  295 (388)
Q Consensus       270 ~g~~dvvid~~g~~~~~~~~~~~l~~  295 (388)
                        ++|.|+-..|+...++.++++...
T Consensus        82 --~pd~il~~~GGQtalnla~~L~~~  105 (127)
T d1a9xa3          82 --RPDAVLPTMGGQTALNCALELERQ  105 (127)
T ss_dssp             --CCSEEECSSSHHHHHHHHHHHHHT
T ss_pred             --CcCCeEEEeeeehHhHHHHHHHHc
Confidence              899999999998877777776554

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.97  E-value=0.2  Score=41.77  Aligned_cols=34  Identities=29%  Similarity=0.220  Sum_probs=29.1

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchH
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEK  238 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~  238 (388)
                      +.||+|+ +++|.+.++.+...|+ +|+.++++.++
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~-~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGF-RVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCchH
Confidence            3577787 9999999999999999 99999987654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.016  Score=50.40  Aligned_cols=31  Identities=23%  Similarity=0.339  Sum_probs=27.5

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      .+|||+|+ |-+|...+..+...|+ +|+++++
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~-~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGH-EVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeC
Confidence            58999997 9999999998888899 8999875

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.069  Score=44.03  Aligned_cols=75  Identities=19%  Similarity=0.252  Sum_probs=46.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHcCCcEE-EcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEF-VNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .+.+|||+|+ |.+|...++.+...|. .+|+++.+++.+...-..-..... .|..+     . +.+.+... ++|+++
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~-----~-~~~~~~~~-~~d~vi   85 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEK-----L-DDYASAFQ-GHDVGF   85 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGG-----G-GGGGGGGS-SCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccc-----c-cccccccc-cccccc
Confidence            4578999998 9999999988876673 489999886644322111122222 22222     1 12222222 799999


Q ss_pred             EccCC
Q 016507          278 ECVGL  282 (388)
Q Consensus       278 d~~g~  282 (388)
                      .|.|.
T Consensus        86 ~~~~~   90 (232)
T d2bkaa1          86 CCLGT   90 (232)
T ss_dssp             ECCCC
T ss_pred             ccccc
Confidence            99875

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.82  E-value=0.32  Score=36.86  Aligned_cols=43  Identities=19%  Similarity=0.190  Sum_probs=33.4

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      +|-|+|.|.+|...+.-+...|. .|++.++.+++...++..++
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~-~v~~~~~~~~~~~~~~~~~~   44 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGV-EVVTSLEGRSPSTIERARTV   44 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTC-EEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCC-eEEEEcCchhHHHHHhhhcc
Confidence            57889999999999988888898 88888877766555544333

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=92.80  E-value=0.24  Score=38.21  Aligned_cols=127  Identities=13%  Similarity=0.104  Sum_probs=75.6

Q ss_pred             EEEEEccchhHHH-HHHHHHHc-CCcEEEEEcCCchHHHHH-HHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGLGSIGLA-VAEGARLC-GATRIIGVDVISEKFEIG-KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Gag~vG~~-ai~la~~~-g~~~Vi~~~~~~~~~~~~-~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|.|+|.|.+|.. .+...+.. ++ .++++++++++.+.+ +.++...+++.       +.+.+ +   ..+|+|+-|+
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~-------~~~ll-~---~~iD~V~I~t   70 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDI-ELVLCTRNPKVLGTLATRYRVSATCTD-------YRDVL-Q---YGVDAVMIHA   70 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTE-EEEEECSCHHHHHHHHHHTTCCCCCSS-------TTGGG-G---GCCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEECCHHHHHHHHHhccccccccc-------HHHhc-c---cccceecccc
Confidence            6889999999854 55555544 55 777888877766554 45776544322       11111 1   2799999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHH------HH-hcCcEEEEeeecCCCccCcHHHHHHHHhCCCC
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFE------VL-HSGKILMGSLFGGLKAKSDIPILLKRYMDKEL  352 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~------~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~  352 (388)
                      ......+.+..++..+  .=+.+.     .++..+...      +. .++..+.-.. ..  ....+.++++.+..|++
T Consensus        71 p~~~H~~~~~~al~~g--k~V~~E-----KP~~~~~~e~~~l~~~a~~~~~~~~vg~-~r--~~~~~~~~~~~~~~G~i  139 (167)
T d1xeaa1          71 ATDVHSTLAAFFLHLG--IPTFVD-----KPLAASAQECENLYELAEKHHQPLYVGF-NG--FDAMVQDWLQVAAAGKL  139 (167)
T ss_dssp             CGGGHHHHHHHHHHTT--CCEEEE-----SCSCSSHHHHHHHHHHHHHTTCCEEEEC-GT--HHHHHHHHHHHHHHTCC
T ss_pred             cccccccccccccccc--cccccC-----CCCcCCHHHHHHHHHHHHHcCCEEEEEe-Cc--CCHHHHHHHHHhhcCCC
Confidence            9888788888888874  445553     233333322      22 2344332211 11  12346677777878855

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.76  E-value=0.082  Score=38.45  Aligned_cols=35  Identities=20%  Similarity=0.285  Sum_probs=31.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      .++|+|+|+|.+|+-+++.++.+|. +|..+.+.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~-~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGA-KTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhcccc-EEEEEeecch
Confidence            4689999999999999999999999 9999987653

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.76  E-value=0.088  Score=38.47  Aligned_cols=35  Identities=23%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ..++++|+|+|.+|+-+++.+..+|. +|..+.+.+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~-~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGA-EVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCC-ceEEEEeec
Confidence            34889999999999999999999999 888887654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.75  E-value=0.057  Score=45.37  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=29.1

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +|+|+|+|+.|++++.+++..|..+|.++++++
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            599999999999999999999976888887765

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.69  E-value=0.065  Score=46.16  Aligned_cols=37  Identities=24%  Similarity=0.262  Sum_probs=31.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .....+|+|+|+|+.|+.++..+...|. +|.+++..+
T Consensus        27 ~~~pkkV~IIGaG~aGLsaA~~L~~~G~-~V~vlE~~~   63 (370)
T d2iida1          27 TSNPKHVVIVGAGMAGLSAAYVLAGAGH-QVTVLEASE   63 (370)
T ss_dssp             CSSCCEEEEECCBHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHHCCC-CEEEEeCCC
Confidence            4455799999999999999998888899 999998654

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=92.67  E-value=0.13  Score=45.35  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=27.6

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ..|||+|+ |-+|..++..+...|+ +|+++++..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~-~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGY-EVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            46789997 9999999998888899 999998744

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.64  E-value=0.48  Score=36.66  Aligned_cols=94  Identities=16%  Similarity=0.259  Sum_probs=56.4

Q ss_pred             CEEEEEccchhHHHHHHHHHHc---CCcEEEEEcCC--chHHHHHHHc----CC---c---------------EEEcCCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLC---GATRIIGVDVI--SEKFEIGKRF----GV---T---------------EFVNSKN  255 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~---g~~~Vi~~~~~--~~~~~~~~~l----ga---~---------------~v~~~~~  255 (388)
                      .+|.|.|-|-+|.++...+-..   +. +|+++-..  .+...++.++    |.   +               .++..++
T Consensus         1 ~kIgINGfGRIGR~v~R~~~~~~~~~i-~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~   79 (169)
T d1hdgo1           1 ARVAINGFGRIGRLVYRIIYERKNPDI-EVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPD   79 (169)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTC-EEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSS
T ss_pred             CEEEEECCChHHHHHHHHHHhccCCCE-EEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCC
Confidence            3789999999999999877532   35 77776322  2334444322    21   0               1222222


Q ss_pred             CCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ...-+    +.++   ++|+||||+|.-...+.+...+..+ .+-|.+..
T Consensus        80 p~~i~----W~~~---gvD~ViEcTG~f~t~~~~~~hl~~G-akkViiSA  121 (169)
T d1hdgo1          80 PSKLP----WKDL---GVDFVIESTGVFRNREKAELHLQAG-AKKVIITA  121 (169)
T ss_dssp             GGGSC----HHHH---TCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESS
T ss_pred             hhhCC----cccc---CCCEEEEecceeccccchhhhccCC-CceEEEec
Confidence            11111    2222   8999999999765567788888876 66666654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.58  E-value=0.097  Score=38.43  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=30.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .++++|+|+|.+|+-+++++..+|. +|..+.+.+
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~-~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGS-KVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCc-ceeEEEecc
Confidence            4689999999999999999999999 999997755

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.58  E-value=0.22  Score=36.76  Aligned_cols=70  Identities=19%  Similarity=0.286  Sum_probs=45.4

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEE-cCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGV-DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~-~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|.|+|+ |-+|.+..+++...+. ++++. +.+..                     ..+         ..+|++||++.
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~-~l~~~id~~~~---------------------~~~---------~~~DVvIDFS~   50 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGH-ELVLKVDVNGV---------------------EEL---------DSPDVVIDFSS   50 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEEETTEE---------------------EEC---------SCCSEEEECSC
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCC-eEEEEECCCcH---------------------HHh---------ccCCEEEEecC
Confidence            5899997 9999999999988888 55433 22110                     111         15788888887


Q ss_pred             CHHHHHHHHHHhhcCCceEEEEccC
Q 016507          282 LASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       282 ~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ... +...++..... +.=+.+|.+
T Consensus        51 p~~-~~~~l~~~~~~-~~p~ViGTT   73 (128)
T d1vm6a3          51 PEA-LPKTVDLCKKY-RAGLVLGTT   73 (128)
T ss_dssp             GGG-HHHHHHHHHHH-TCEEEECCC
T ss_pred             HHH-HHHHHHHHHhc-CCCEEEEcC
Confidence            776 44444444443 666677764

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.18  Score=41.80  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +.+|+|+|+|++|..+++.+...|..++..+|.+.
T Consensus        30 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~   64 (247)
T d1jw9b_          30 DSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   64 (247)
T ss_dssp             HCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence            46999999999999999999999999999987554

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.53  E-value=0.13  Score=40.39  Aligned_cols=48  Identities=25%  Similarity=0.142  Sum_probs=35.9

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~  242 (388)
                      +.+...--++.+|||+|+|+++.+++..+..  .++|.++.|+.++.+.+
T Consensus         9 l~~~~~~~~~k~vlIlGaGG~arai~~aL~~--~~~i~I~nR~~~ka~~l   56 (177)
T d1nvta1           9 LEEEIGRVKDKNIVIYGAGGAARAVAFELAK--DNNIIIANRTVEKAEAL   56 (177)
T ss_dssp             HHHHHCCCCSCEEEEECCSHHHHHHHHHHTS--SSEEEEECSSHHHHHHH
T ss_pred             HHHhCCCcCCCEEEEECCcHHHHHHHHHHcc--ccceeeehhhhhHHHHH
Confidence            3343344578899999999999988776644  34899999998877654

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.48  E-value=0.22  Score=43.41  Aligned_cols=74  Identities=18%  Similarity=0.223  Sum_probs=44.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc----hHHHHHH---HcCCcEE-EcCCCCCCccHHHHHHhhcCCCc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS----EKFEIGK---RFGVTEF-VNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~----~~~~~~~---~lga~~v-~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      ..|||+|+ |-+|...+..+...|+ +|+++++..    .......   .-++..+ .|-.+  .+.+.+.+...   ++
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d--~~~l~~~~~~~---~~   75 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGY-DCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCD--RKGLEKVFKEY---KI   75 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTC--HHHHHHHHHHS---CC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcC-eEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCC--HHHHHHHHhcc---CC
Confidence            46899997 9999999998888898 899886422    1111111   2233322 22222  12233323222   89


Q ss_pred             cEEEEccCC
Q 016507          274 DYCFECVGL  282 (388)
Q Consensus       274 dvvid~~g~  282 (388)
                      |+||++.+.
T Consensus        76 d~VihlAa~   84 (347)
T d1z45a2          76 DSVIHFAGL   84 (347)
T ss_dssp             CEEEECCSC
T ss_pred             CEEEEcccc
Confidence            999998764

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=92.46  E-value=0.41  Score=37.10  Aligned_cols=94  Identities=23%  Similarity=0.368  Sum_probs=59.5

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcC-C--chHHHHHHHc----CC---c---------------EEEcCCCCCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDV-I--SEKFEIGKRF----GV---T---------------EFVNSKNCGD  258 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~-~--~~~~~~~~~l----ga---~---------------~v~~~~~~~~  258 (388)
                      +|.|.|-|-+|.++...+...+. +|+++-. .  .+...++.++    |.   +               .++..++...
T Consensus         2 kIgINGfGRIGR~~~R~~~~~~~-~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAALEMGA-QVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEECCcHHHHHHHHHHHhCCC-cEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            68899999999999998877788 6666633 2  2444444432    21   1               1122222001


Q ss_pred             ccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          259 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       259 ~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      -+    +.++   ++|+||||+|.-...+.+...+..+ .+-|.+..+
T Consensus        81 i~----W~~~---gvD~ViEcTG~f~~~~~~~~hl~~g-akkViisaP  120 (169)
T d1dssg1          81 IP----WSKA---GAEYIVESTGVFTTIEKASAHFKGG-AKKVIISAP  120 (169)
T ss_dssp             CC----HHHH---TCCEEEECSSSCCSHHHHGGGGTTT-CSEEEESSC
T ss_pred             CC----cccc---CCCEEEecCceEcCHHHHHHHHhcC-CceEeecCC
Confidence            11    1222   8999999999876677888888886 777777653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=92.46  E-value=0.051  Score=45.01  Aligned_cols=33  Identities=21%  Similarity=0.419  Sum_probs=28.6

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +|+|+|+|+.|+.++..+...|+++|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            489999999999999988888975699998754

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.59  Score=36.00  Aligned_cols=94  Identities=21%  Similarity=0.272  Sum_probs=56.7

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEEEEcCCc--hHHHHHHHc----C---Cc---------------EEEcCCCCCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDVIS--EKFEIGKRF----G---VT---------------EFVNSKNCGD  258 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~~~~--~~~~~~~~l----g---a~---------------~v~~~~~~~~  258 (388)
                      +|.|.|.|-+|.++...+... .. +|+++-...  +...++.++    |   .+               .++..++  .
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i-~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~--p   79 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDI-EIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD--P   79 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS--G
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCe-EEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCC--h
Confidence            588999999999999887655 35 677774332  223333221    1   11               0122222  1


Q ss_pred             ccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          259 KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       259 ~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      .++  .+.++   ++|+|+||+|.-...+.+...+..+ .+-|.+...
T Consensus        80 ~~i--~W~~~---gvDiViEcTG~f~t~~~~~~hl~~g-akkViiSaP  121 (166)
T d1gado1          80 ANL--KWDEV---GVDVVAEATGLFLTDETARKHITAG-AKKVVMTGP  121 (166)
T ss_dssp             GGG--CHHHH---TCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSC
T ss_pred             HHC--Ccccc---CCCEEEEccccccCHHHHHHHhcCC-CceEEeecc
Confidence            111  12222   8999999999766567788888886 776777653

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.26  E-value=0.049  Score=46.43  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=29.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      .|+|+|+|++|++++..++..|. +|+++++.++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~-~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGI-DNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-CEEEEeCCCC
Confidence            59999999999999999999999 8999987653

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.24  E-value=0.15  Score=42.79  Aligned_cols=95  Identities=18%  Similarity=0.111  Sum_probs=59.9

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHHHhhcC
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+++|++||-.|+|. |.+++.+|+..++ +|++++.++...+++++    .+.+   .+++.+.   .       ++..
T Consensus       104 ~~~~g~~VlD~~aG~-G~~~l~~a~~~~~-~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~---~-------~~~~  171 (260)
T d2frna1         104 VAKPDELVVDMFAGI-GHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDN---R-------DFPG  171 (260)
T ss_dssp             HCCTTCEEEETTCTT-TTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCT---T-------TCCC
T ss_pred             hcCCccEEEECcceE-cHHHHHHHHhCCc-EEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcch---H-------Hhcc
Confidence            368999999987632 4444556665445 99999999988877764    3442   2343222   1       2222


Q ss_pred             C-CccEEE-Ecc-CCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          271 G-GADYCF-ECV-GLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       271 g-~~dvvi-d~~-g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      . .+|.|+ +.- .+...+..+++.++++ |.+..+..
T Consensus       172 ~~~~D~Ii~~~p~~~~~~l~~a~~~l~~g-G~lh~~~~  208 (260)
T d2frna1         172 ENIADRILMGYVVRTHEFIPKALSIAKDG-AIIHYHNT  208 (260)
T ss_dssp             CSCEEEEEECCCSSGGGGHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCCCEEEECCCCchHHHHHHHHhhcCCC-CEEEEEec
Confidence            3 688665 322 2334478899999997 87766544

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=92.21  E-value=0.12  Score=38.51  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=33.9

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      .+.++.+|+|+|+|.+|+-++..++..|. +|..+.+.+.
T Consensus        31 ~~~~~k~v~VIGgG~iG~E~A~~l~~~g~-~Vtvie~~~~   69 (133)
T d1q1ra2          31 QLIADNRLVVIGGGYIGLEVAATAIKANM-HVTLLDTAAR   69 (133)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSSS
T ss_pred             hhccCCEEEEECCchHHHHHHHHHHhhCc-ceeeeeeccc
Confidence            35677899999999999999999999999 8999987653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=91.99  E-value=0.11  Score=42.97  Aligned_cols=35  Identities=26%  Similarity=0.189  Sum_probs=30.6

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      +.-.+|+|+|+|..|++++..+...|. +|.++++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~-~V~vier~   38 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGY-SVHILARD   38 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESS
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCC-CEEEEeCC
Confidence            344689999999999999999999999 89999864

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.97  E-value=0.27  Score=41.54  Aligned_cols=34  Identities=24%  Similarity=0.177  Sum_probs=29.4

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ..+|||+|+ |.+|...+..+...|. +|+++.+++
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGH-PTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCC
Confidence            457999997 9999999998888898 898888765

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=91.96  E-value=1.3  Score=37.31  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC---CchHHHHHHHcCCcEEEcCCCC--------------
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRFGVTEFVNSKNC--------------  256 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~---~~~~~~~~~~lga~~v~~~~~~--------------  256 (388)
                      .+...+.++.+|+...+|..|++++..++.+|. +++++..   ++.+.+.++.+|++-++...+.              
T Consensus        52 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~G~-~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~  130 (292)
T d2bhsa1          52 EKRGEIKPGDVLIEATSGNTGIALAMIAALKGY-RMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMAN  130 (292)
T ss_dssp             HHTTSCCTTSEEEEECCSHHHHHHHHHHHHHTC-EEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHH
T ss_pred             HHhCCcCCCceeeeecccchhHHHHHHHHhcCc-ceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccc
Confidence            344455667766666779999999999999998 4444422   4567888889998744321110              


Q ss_pred             ----------CCc--------cHHHHHHhhcCCCccEEEEccCCHHHHH---HHHHHhhcCCceEEEEc
Q 016507          257 ----------GDK--------SVSQIIIDMTDGGADYCFECVGLASLVQ---EAYACCRKGWGKTIVLG  304 (388)
Q Consensus       257 ----------~~~--------~~~~~i~~~~~g~~dvvid~~g~~~~~~---~~~~~l~~~~G~~v~~g  304 (388)
                                +..        ....++.+..++.+|+++-++|+...+.   ..++...+. .+++.+.
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~-~~i~~Ve  198 (292)
T d2bhsa1         131 RGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKP-VTIVGLQ  198 (292)
T ss_dssp             HTSSEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHTSSSC-CEEEEEE
T ss_pred             cccccccCCCchhcchhhHHHHHHHHhHHhcCCCCCcccccCCCccchhhhhhhhhhccCc-ceEEEec
Confidence                      000        0222333333446899999888765444   444444554 6666554

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=91.95  E-value=0.27  Score=41.55  Aligned_cols=98  Identities=14%  Similarity=0.134  Sum_probs=65.4

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc-----CC-----cEEEcCCCCCCccHHHHHHhh
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF-----GV-----TEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l-----ga-----~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      ....++|||+|+|. |..+-.++++.+..+|.+++.+++-.+.++++     ++     -.++..      +-.+.+++ 
T Consensus        73 ~~~p~~vLiiGgG~-G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~------D~~~~l~~-  144 (274)
T d1iy9a_          73 HPNPEHVLVVGGGD-GGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVD------DGFMHIAK-  144 (274)
T ss_dssp             SSSCCEEEEESCTT-CHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEES------CSHHHHHT-
T ss_pred             cCCcceEEecCCCC-cHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEec------hHHHHHhh-
Confidence            34568999998765 56666777877777999999999888887764     21     123322      22344443 


Q ss_pred             cCCCccEEE-EccC---------CHHHHHHHHHHhhcCCceEEEEcc
Q 016507          269 TDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       269 ~~g~~dvvi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +...||+|+ |...         +..-.+.+.+.|+++ |.++.-..
T Consensus       145 ~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~-Gv~v~q~~  190 (274)
T d1iy9a_         145 SENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKED-GIFVAQTD  190 (274)
T ss_dssp             CCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEE-EEEEEECC
T ss_pred             cCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCC-ceEEEecC
Confidence            334899996 3322         234478889999997 98887653

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=91.94  E-value=0.086  Score=41.93  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=33.7

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHH
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIG  242 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~  242 (388)
                      .+|.|+|+|.+|...+.++-..|+ +|+..+.+++..+.+
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhh
Confidence            579999999999998888888899 999999998776544

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.92  E-value=0.11  Score=37.66  Aligned_cols=34  Identities=29%  Similarity=0.390  Sum_probs=30.5

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .++++|+|+|.+|+-+++.++.+|. +|..+.+.+
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~-~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGA-QVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhccc-ceEEEeeec
Confidence            3789999999999999999999999 899997765

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.90  E-value=0.39  Score=38.02  Aligned_cols=98  Identities=13%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc----EEEcCCCCCCccHHHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT----EFVNSKNCGDKSVSQI  264 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~----~v~~~~~~~~~~~~~~  264 (388)
                      +.+.....++++||=+|.|. |..++.+++ .+. +|++++.++...+.+++    .+..    .++..+.      .+ 
T Consensus        44 Li~~l~~~~~~~VLDiGcG~-G~~~~~la~-~~~-~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~------~~-  113 (194)
T d1dusa_          44 LVENVVVDKDDDILDLGCGY-GVIGIALAD-EVK-STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL------YE-  113 (194)
T ss_dssp             HHHHCCCCTTCEEEEETCTT-SHHHHHHGG-GSS-EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECST------TT-
T ss_pred             HHHhCCcCCCCeEEEEeecC-ChhHHHHHh-hcc-ccceeeeccccchhHHHHHHHhCCccceEEEEEcch------hh-
Confidence            55677888999999998654 555566665 344 89999999987777764    2321    1222211      11 


Q ss_pred             HHhhcCCCccEEEEccC---CH----HHHHHHHHHhhcCCceEEEE
Q 016507          265 IIDMTDGGADYCFECVG---LA----SLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       265 i~~~~~g~~dvvid~~g---~~----~~~~~~~~~l~~~~G~~v~~  303 (388)
                        ...++.||+|+-...   +.    ..+..+.+.|+++ |.++..
T Consensus       114 --~~~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~Lkpg-G~l~i~  156 (194)
T d1dusa_         114 --NVKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDN-GEIWVV  156 (194)
T ss_dssp             --TCTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEE-EEEEEE
T ss_pred             --hhccCCceEEEEcccEEecchhhhhHHHHHHHhcCcC-cEEEEE
Confidence              112238999986322   22    2367788889997 987654

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=91.89  E-value=0.33  Score=41.84  Aligned_cols=97  Identities=22%  Similarity=0.232  Sum_probs=63.3

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc------CC-----cEEEcCCCCCCccHHHHHHh
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF------GV-----TEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l------ga-----~~v~~~~~~~~~~~~~~i~~  267 (388)
                      .+..++|||+|+|. |..+-.+++.....+|.+++.+++-.+.++++      ++     -.++.      .+..+.+++
T Consensus        75 ~~~pk~VLiiG~G~-G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~------~Da~~~l~~  147 (312)
T d1uira_          75 HPEPKRVLIVGGGE-GATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVI------DDARAYLER  147 (312)
T ss_dssp             SSCCCEEEEEECTT-SHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEE------SCHHHHHHH
T ss_pred             CCCcceEEEeCCCc-hHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEE------chHHHHhhh
Confidence            34567999998765 56666677776555999999999888877753      11     12322      234445544


Q ss_pred             hcCCCccEEE-Ec---cC---------CHHHHHHHHHHhhcCCceEEEEc
Q 016507          268 MTDGGADYCF-EC---VG---------LASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       268 ~~~g~~dvvi-d~---~g---------~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                       +++.||+|| |.   .+         +..-.+.+.+.|+++ |.++.-.
T Consensus       148 -~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~-Gvlv~~~  195 (312)
T d1uira_         148 -TEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPG-GVMGMQT  195 (312)
T ss_dssp             -CCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             -cCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCC-ceEEEec
Confidence             444899996 43   12         123367888999997 9887644

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.80  E-value=0.12  Score=40.73  Aligned_cols=39  Identities=26%  Similarity=0.286  Sum_probs=33.3

Q ss_pred             EEEEE-ccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH
Q 016507          204 TVVIF-GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK  243 (388)
Q Consensus       204 ~VlI~-Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~  243 (388)
                      +|.|+ |+|.+|.+.++.+...|+ +|++..|++++.+.+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~-~V~l~~R~~e~~~~l~   41 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGH-EIVVGSRREEKAEAKA   41 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTC-EEEEEESSHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHH
Confidence            58888 569999999999999999 8999999988765543

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=91.80  E-value=0.27  Score=40.24  Aligned_cols=48  Identities=23%  Similarity=0.295  Sum_probs=40.5

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH-cCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR-FGVT  248 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~-lga~  248 (388)
                      -.|.+|+|-|.|.+|..+++++...|+ +|++++.+..+.+.+.. .|..
T Consensus        37 l~g~~v~IqG~GnVG~~~a~~L~~~Ga-kvv~~d~~~~~~~~~~~~~g~~   85 (230)
T d1leha1          37 LEGLAVSVQGLGNVAKALCKKLNTEGA-KLVVTDVNKAAVSAAVAEEGAD   85 (230)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHCCE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEeecccHHHHHHHHHhcCCc
Confidence            468899999999999999999999999 99999888877765554 5554

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.80  E-value=0.089  Score=38.70  Aligned_cols=36  Identities=28%  Similarity=0.421  Sum_probs=32.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      ..++++|+|+|.+|+-+++++..+|. +|.++.+++.
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~-~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGS-EVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCC-eEEEEEEccc
Confidence            45789999999999999999999999 9999987664

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.60  E-value=0.11  Score=38.23  Aligned_cols=33  Identities=12%  Similarity=0.040  Sum_probs=29.2

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .++++|+|+|.+|+-.++.++.+|. +|..+.++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~-~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGL-DVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCC-eEEEEEec
Confidence            4679999999999999999999999 88888654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.53  E-value=0.21  Score=39.70  Aligned_cols=96  Identities=20%  Similarity=0.281  Sum_probs=60.1

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcEE-EcCCCCCCccHHHHHHhhc-C
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTEF-VNSKNCGDKSVSQIIIDMT-D  270 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~v-~~~~~~~~~~~~~~i~~~~-~  270 (388)
                      +...++.+||=+|.| .|..+..+++ .|+ +|++++.+++.++.++.    .+.+.+ +...+     +    .++. .
T Consensus        26 ~~~~~~grvLDiGcG-~G~~~~~la~-~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d-----~----~~~~~~   93 (198)
T d2i6ga1          26 AKVVAPGRTLDLGCG-NGRNSLYLAA-NGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVD-----L----NTLTFD   93 (198)
T ss_dssp             HTTSCSCEEEEETCT-TSHHHHHHHH-TTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECC-----T----TTCCCC
T ss_pred             cccCCCCcEEEECCC-CCHHHHHHHH-Hhh-hhccccCcHHHHHHHHHHhhhccccchhhhhee-----c----cccccc
Confidence            333344589999886 5777777776 488 99999999987776653    344321 11111     0    0111 1


Q ss_pred             CCccEEEEccC-----CH---HHHHHHHHHhhcCCceEEEEcc
Q 016507          271 GGADYCFECVG-----LA---SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       271 g~~dvvid~~g-----~~---~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.||+|+....     ..   ..+..+.++|+++ |.++....
T Consensus        94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~~~~~~~  135 (198)
T d2i6ga1          94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPG-GYNLIVAA  135 (198)
T ss_dssp             CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCC-cEEEEEEe
Confidence            37999986332     11   2467788889997 98887654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.53  E-value=0.14  Score=37.81  Aligned_cols=36  Identities=31%  Similarity=0.449  Sum_probs=31.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +..++++|+|+|.+|+-+++..+.+|. +|..+.+.+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~-~Vtive~~~   59 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGS-RLDVVEMMD   59 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTC-EEEEECSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCC-EEEEEEeec
Confidence            345899999999999999999999999 999997754

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.50  E-value=0.13  Score=37.85  Aligned_cols=34  Identities=21%  Similarity=0.137  Sum_probs=30.8

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .++|+|+|+|.+|+-++..++.+|. +|..+.+++
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~-~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGS-KTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCc-EEEEEeecc
Confidence            3689999999999999999999999 899998765

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=1.7  Score=37.75  Aligned_cols=110  Identities=22%  Similarity=0.251  Sum_probs=69.6

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC---CchHHHHHHHcCCcEEEcCCC---------------
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRFGVTEFVNSKN---------------  255 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~---~~~~~~~~~~lga~~v~~~~~---------------  255 (388)
                      .+...++++..|+...+|..|.+++.+|+.+|+ +.+++..   +++|.+.++.+|++-+.....               
T Consensus        89 ~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~Gi-~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~  167 (355)
T d1jbqa_          89 ERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGY-RCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWR  167 (355)
T ss_dssp             HHHTCSCTTCEEEEECSSHHHHHHHHHHHHHTC-EEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHH
T ss_pred             HHcCCcccCceEEEecccchhhHHHHHHHhccC-CeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHH
Confidence            444556677776666779999999999999999 4444432   446888899999975431100               


Q ss_pred             -------------CC-C-------ccHHHHHHhhcCCCccEEEEccCCHHH---HHHHHHHhhcCCceEEEEcc
Q 016507          256 -------------CG-D-------KSVSQIIIDMTDGGADYCFECVGLASL---VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       256 -------------~~-~-------~~~~~~i~~~~~g~~dvvid~~g~~~~---~~~~~~~l~~~~G~~v~~g~  305 (388)
                                   .. .       .....++.+..++.+|.|+-++|+...   +...++...+. -+++.+..
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~ag~~t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~-~kii~vep  240 (355)
T d1jbqa_         168 LKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPG-CRIIGVDP  240 (355)
T ss_dssp             HHHHSTTEECCCTTTCTHHHHHHHHTHHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEEE
T ss_pred             HHHhccccccccccCcccchhhhcccchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCc-ceEEeecc
Confidence                         00 0       112223333444578999999987644   34555556665 67776654

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.38  E-value=0.58  Score=40.08  Aligned_cols=98  Identities=12%  Similarity=0.084  Sum_probs=64.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC---c-------EEEcCCCCCCccHHHHHHhh
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV---T-------EFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga---~-------~v~~~~~~~~~~~~~~i~~~  268 (388)
                      ....++|||+|+|. |..+-.++++....+|.+++.+++-.+.++++-.   .       .++.      .+-.+.+++ 
T Consensus       104 ~~~pk~VLIiGgG~-G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i------~Da~~~l~~-  175 (312)
T d2b2ca1         104 HPDPKRVLIIGGGD-GGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFC------GDGFEFLKN-  175 (312)
T ss_dssp             SSSCCEEEEESCTT-SHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEEC------SCHHHHHHH-
T ss_pred             CCCCCeEEEeCCCc-hHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEE------chHHHHHHh-
Confidence            34557899998765 5555577787776699999999998888887421   0       1221      234455544 


Q ss_pred             cCCCccEEEEccCC----------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          269 TDGGADYCFECVGL----------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       269 ~~g~~dvvid~~g~----------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +...||+||-=+..          ..-.+.+.+.|+++ |.++.-+.
T Consensus       176 ~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~-Gi~v~q~~  221 (312)
T d2b2ca1         176 HKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKED-GILSSQGE  221 (312)
T ss_dssp             CTTCEEEEEECCC-------------HHHHHHHHEEEE-EEEEEECC
T ss_pred             CCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCC-cEEEEecC
Confidence            44589999742211          12256778899997 99887764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.27  E-value=0.35  Score=40.28  Aligned_cols=42  Identities=24%  Similarity=0.165  Sum_probs=31.7

Q ss_pred             CCCEEEEEcc-chhHHHHHH-HHHH--cCCcEEEEEcCCchHHHHHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAE-GARL--CGATRIIGVDVISEKFEIGK  243 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~-la~~--~g~~~Vi~~~~~~~~~~~~~  243 (388)
                      .|..+||+|+ +++|.+.++ ||+.  .|+ +|+.+++++++++.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~-~Vv~~~r~~~~l~~~~   50 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGS-VMLVSARSESMLRQLK   50 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTC-EEEEEESCHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCC-EEEEEECCHHHHHHHH
Confidence            4566777787 999998665 5553  688 9999999998876543

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.25  E-value=0.21  Score=43.77  Aligned_cols=72  Identities=19%  Similarity=0.235  Sum_probs=45.2

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcE--EEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTE--FVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~--v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      .+-+|||+|+ |-+|...+..+...|. +|+++++.+..... .......  ..|..+     .. .+.+.. .++|.|+
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~-~V~~~d~~~~~~~~-~~~~~~~~~~~D~~~-----~~-~~~~~~-~~~d~Vi   84 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGH-YVIASDWKKNEHMT-EDMFCDEFHLVDLRV-----ME-NCLKVT-EGVDHVF   84 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCSSSC-GGGTCSEEEECCTTS-----HH-HHHHHH-TTCSEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcC-EEEEEeCCCccchh-hhcccCcEEEeechh-----HH-HHHHHh-hcCCeEe
Confidence            4668999987 9999999999999999 89998764432111 1111112  223222     22 223322 2799999


Q ss_pred             EccC
Q 016507          278 ECVG  281 (388)
Q Consensus       278 d~~g  281 (388)
                      .+.+
T Consensus        85 h~a~   88 (363)
T d2c5aa1          85 NLAA   88 (363)
T ss_dssp             ECCC
T ss_pred             eccc
Confidence            9774

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.21  E-value=0.11  Score=41.89  Aligned_cols=86  Identities=20%  Similarity=0.134  Sum_probs=55.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .+.+|.|+|.|.+|...+++++.+|+ +|++.++...+...   ..    +..     .++.+.+.     ..|+|.-++
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~~---~~----~~~-----~~l~~l~~-----~~D~v~~~~  105 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGA-KVIAYDPYPMKGDH---PD----FDY-----VSLEDLFK-----QSDVIDLHV  105 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSSCC---TT----CEE-----CCHHHHHH-----HCSEEEECC
T ss_pred             cceeeeeeecccccccccccccccce-eeeccCCccchhhh---cc----hhH-----HHHHHHHH-----hcccceeee
Confidence            46899999999999999999999999 99999875432110   00    111     22333332     357776665


Q ss_pred             CCHHH-----HHHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL-----VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~-----~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .....     -...++.|+++ ..+|.++.
T Consensus       106 plt~~T~~li~~~~l~~mk~~-a~lIN~aR  134 (199)
T d1dxya1         106 PGIEQNTHIINEAAFNLMKPG-AIVINTAR  134 (199)
T ss_dssp             CCCGGGTTSBCHHHHHHSCTT-EEEEECSC
T ss_pred             cccccccccccHHHhhccCCc-eEEEeccc
Confidence            53221     24667777776 77776653

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.01  E-value=0.16  Score=40.18  Aligned_cols=83  Identities=20%  Similarity=0.251  Sum_probs=56.1

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...+++++.+|+ +|++.++++...       .....       .++.+.++     ..|+|+-+.
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~-~v~~~d~~~~~~-------~~~~~-------~~l~ell~-----~sDiv~~~~  100 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGA-QVRGFSRTPKEG-------PWRFT-------NSLEEALR-----EARAAVCAL  100 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTC-EEEEECSSCCCS-------SSCCB-------SCSHHHHT-----TCSEEEECC
T ss_pred             cCceEEEeccccccccceeeeecccc-cccccccccccc-------ceeee-------echhhhhh-----ccchhhccc
Confidence            47899999999999999999999999 999998764321       11111       22333332     578887766


Q ss_pred             CCHH-H----HHHHHHHhhcCCceEEEEc
Q 016507          281 GLAS-L----VQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       281 g~~~-~----~~~~~~~l~~~~G~~v~~g  304 (388)
                      .... +    -...++.++++ ..+|.++
T Consensus       101 pl~~~t~~li~~~~l~~mk~~-ailIN~~  128 (181)
T d1qp8a1         101 PLNKHTRGLVKYQHLALMAED-AVFVNVG  128 (181)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-CEEEECS
T ss_pred             ccccccccccccceeeecccc-ceEEecc
Confidence            5321 0    14667777776 7777665

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=90.98  E-value=0.42  Score=34.60  Aligned_cols=86  Identities=14%  Similarity=0.011  Sum_probs=51.5

Q ss_pred             CCEEEEEccchh-----------HHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcC
Q 016507          202 GSTVVIFGLGSI-----------GLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       202 ~~~VlI~Gag~v-----------G~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ..+|||+|+|+.           +..+++.+|..|+ +++.+.++++....-..+ +|+++-..= +.+.+.+.+++.  
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~-~~IliN~NPeTVstd~d~-aD~lYfepl-t~e~v~~Ii~~E--   78 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGY-ETIMVNCNPETVSTDYDT-SDRLYFEPV-TLEDVLEIVRIE--   78 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTC-EEEEECCCTTSSTTSTTS-SSEEECCCC-SHHHHHHHHHHH--
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCC-eEEEEecChhhhhcChhh-cCceEEccC-CHHHHHHHHHHh--
Confidence            468999998753           4456666678899 899998888765433222 344443211 112222222222  


Q ss_pred             CCccEEEEccCCHHHHHHHHHHh
Q 016507          271 GGADYCFECVGLASLVQEAYACC  293 (388)
Q Consensus       271 g~~dvvid~~g~~~~~~~~~~~l  293 (388)
                       ++|.|+-..|+...++.+..+-
T Consensus        79 -~p~~ii~~~GGQtalnla~~L~  100 (121)
T d1a9xa4          79 -KPKGVIVQYGGQTPLKLARALE  100 (121)
T ss_dssp             -CCSEEECSSSTHHHHTTHHHHH
T ss_pred             -CCCEEEeehhhhhHHHHHHHHH
Confidence             7788888888877555555443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.97  E-value=0.082  Score=43.62  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=31.1

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      .++||+|+ +++|.+.++.+...|+ +|+.+++++++.
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga-~V~i~~~~~~~~   38 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGY-RVVVLDLRREGE   38 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTC-EEEEEESSCCSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCcccc
Confidence            57889987 9999999999988999 999999877643

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=90.93  E-value=1.1  Score=34.73  Aligned_cols=92  Identities=22%  Similarity=0.318  Sum_probs=55.3

Q ss_pred             EEEEEccchhHHHHHHHHHHc----CCcEEEEEcC--CchHHHHHHHc----C---Cc---------------EEEcCCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLC----GATRIIGVDV--ISEKFEIGKRF----G---VT---------------EFVNSKN  255 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~----g~~~Vi~~~~--~~~~~~~~~~l----g---a~---------------~v~~~~~  255 (388)
                      +|.|.|-|-+|.++...+-..    .. .|+++-.  +.+...++.++    |   ..               .++..++
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~-~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~   81 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDI-EIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANRN   81 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCe-EEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecCC
Confidence            588999999999998876532    23 5666642  22334444322    1   11               1122222


Q ss_pred             CCCccHHHHHHhhcCC--CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          256 CGDKSVSQIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g--~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                               ..++..+  ++|+|+||+|.-...+.+.+.|..+ .+-|.+..+
T Consensus        82 ---------p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSAP  124 (173)
T d1obfo1          82 ---------PAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIISAP  124 (173)
T ss_dssp             ---------GGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEESSC
T ss_pred             ---------HHHCcccccccceEEEecccccCHHHHHHHhccC-CcceEEecC
Confidence                     1122222  8999999999755467778888886 777777653

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.90  E-value=0.14  Score=43.91  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=31.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ++..+|+|+|+|..|+.|+..+...|+ +|.++..++
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~~G~-~V~VlEa~~   38 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQSFGM-DVTLLEARD   38 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTC-EEEEECSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhCCC-CEEEEeCCC
Confidence            455689999999999999999999999 899997654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.82  E-value=0.81  Score=35.62  Aligned_cols=81  Identities=14%  Similarity=0.021  Sum_probs=50.2

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch--HHHHHHHcC------Cc---EEEcCCCCCCccHHHHHHhhcCCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFG------VT---EFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~--~~~~~~~lg------a~---~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      +|.|+|+|..|.+.+..+-..|. +|....+..+  ..+.+.+..      ..   ..+...    .++.+.+.     .
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~-~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~----~~~~~~~~-----~   71 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGN-EVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWP----EQLEKCLE-----N   71 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCC-EEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECG----GGHHHHHT-----T
T ss_pred             EEEEECCCHHHHHHHHHHHHCCC-EEEEEEecccHHHHHHHhhhhhhhhhcchhcccccccc----ccHHHHHh-----c
Confidence            58899999999998888877787 8888876433  233332211      10   011111    23333332     6


Q ss_pred             ccEEEEccCCHHHHHHHHHHhhc
Q 016507          273 ADYCFECVGLASLVQEAYACCRK  295 (388)
Q Consensus       273 ~dvvid~~g~~~~~~~~~~~l~~  295 (388)
                      .|+|+-++.... +...++.+.+
T Consensus        72 ad~Ii~avps~~-~~~~~~~l~~   93 (180)
T d1txga2          72 AEVVLLGVSTDG-VLPVMSRILP   93 (180)
T ss_dssp             CSEEEECSCGGG-HHHHHHHHTT
T ss_pred             cchhhcccchhh-hHHHHHhhcc
Confidence            899999999876 6666665554

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=90.70  E-value=0.09  Score=43.01  Aligned_cols=94  Identities=19%  Similarity=0.191  Sum_probs=61.3

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHH---cCCcEEEEEcCCchHHHHHHHc----CCc---EEEcCCCCCCccHHHHHHhh
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARL---CGATRIIGVDVISEKFEIGKRF----GVT---EFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~---~g~~~Vi~~~~~~~~~~~~~~l----ga~---~v~~~~~~~~~~~~~~i~~~  268 (388)
                      ++++.+||=+|.|. |..+..+++.   .++ +|+++|.+++-++.+++.    +..   +..+.+.          ..+
T Consensus        37 ~~~~~~vLDlGCGt-G~~~~~l~~~~~~~~~-~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~----------~~~  104 (225)
T d1im8a_          37 VTADSNVYDLGCSR-GAATLSARRNINQPNV-KIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI----------RHV  104 (225)
T ss_dssp             CCTTCEEEEESCTT-CHHHHHHHHTCCCSSC-EEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCT----------TTC
T ss_pred             cCCCCEEEEeccch-hhHHHHHHHhhcCCCC-ceEEeCCCHHHHHHHHHHhHhhcccchhhhccchh----------hcc
Confidence            68899999998644 5566666664   577 999999999988887752    221   1222111          112


Q ss_pred             cCCCccEEEEccCC--------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          269 TDGGADYCFECVGL--------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       269 ~~g~~dvvid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ..+.+|+++-....        ...++.+.+.|+++ |.++..-.
T Consensus       105 ~~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~Lkpg-G~li~~~~  148 (225)
T d1im8a_         105 EIKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPN-GVLVLSEK  148 (225)
T ss_dssp             CCCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccccceeeEEeeeccccChhhHHHHHHHHHHhCCCC-ceeecccc
Confidence            22267777654321        13488999999998 99987643

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=90.70  E-value=0.47  Score=35.66  Aligned_cols=70  Identities=14%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHcCCc------EEEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVT------EFVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~lga~------~v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      .+|.|+|| |.+|...+.++...+. ++++.++.++.+.+.+.-.-++      ..+.  .   .+..+.++     +.|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~--~---~~~~~~~~-----~aD   70 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLG--P---EQLPDCLK-----GCD   70 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEES--G---GGHHHHHT-----TCS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEc--C---CChHHHhC-----CCC
Confidence            47999997 9999999998888774 6899999877654432211111      1221  1   23344332     789


Q ss_pred             EEEEccCC
Q 016507          275 YCFECVGL  282 (388)
Q Consensus       275 vvid~~g~  282 (388)
                      +|+-+.|.
T Consensus        71 ivVitag~   78 (144)
T d1mlda1          71 VVVIPAGV   78 (144)
T ss_dssp             EEEECCSC
T ss_pred             EEEECCCc
Confidence            99998884

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=90.68  E-value=0.99  Score=34.68  Aligned_cols=94  Identities=16%  Similarity=0.183  Sum_probs=57.6

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEEEEcC---CchHHHHHHHc----C---Cc---------------EEEcCCCCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDV---ISEKFEIGKRF----G---VT---------------EFVNSKNCG  257 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~~---~~~~~~~~~~l----g---a~---------------~v~~~~~~~  257 (388)
                      +|.|.|-|-+|.++...+... .. +|+++-.   +.+...++-++    |   .+               .++..++  
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~-~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~~~~~--   78 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDI-EVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVFAEKD--   78 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSE-EEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEECCSS--
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCc-EEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEEeCCC--
Confidence            688999999999999877643 45 6777632   23445555432    1   11               1122222  


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      ..++  .+.+.   ++|+|+||+|.-...+.+...+..+ .+-|.+...
T Consensus        79 p~~i--~W~~~---gvdiViEcTG~f~~~~~~~~hl~~g-akkViiSAP  121 (166)
T d2b4ro1          79 PSQI--PWGKC---QVDVVCESTGVFLTKELASSHLKGG-AKKVIMSAP  121 (166)
T ss_dssp             GGGC--CHHHH---TCSEEEECSSSCCSHHHHTHHHHTT-CSEEEESSC
T ss_pred             hHHc--ccccc---CCCEEEEecccccchhhhhhhhccC-CCEEEEecc
Confidence            1111  12222   8999999999766567777888876 766666543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=90.67  E-value=0.16  Score=39.37  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=29.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCc-EEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~-~Vi~~~~~~  236 (388)
                      .|.+|+|+|+|.+|+.++..++..+.+ +|+++++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            378999999999999998888877743 788887665

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.64  E-value=0.37  Score=40.34  Aligned_cols=35  Identities=26%  Similarity=0.245  Sum_probs=30.2

Q ss_pred             CCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          202 GSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       202 ~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      ..+|||+|+ |.+|..++..+...|. +|++++++..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~-~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGH-PTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTC-CEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEECCCc
Confidence            357999998 9999999999988898 8999988653

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.63  E-value=0.11  Score=43.25  Aligned_cols=33  Identities=24%  Similarity=0.274  Sum_probs=29.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      .|+|+|+|+.|++++..+...|. +|.+++..+.
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~-~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGK-SVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCC-cEEEEecCCC
Confidence            48899999999999988888898 8999988764

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=90.61  E-value=0.29  Score=41.16  Aligned_cols=95  Identities=15%  Similarity=0.127  Sum_probs=63.0

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEE
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCF  277 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvi  277 (388)
                      ..++.+||=+|.|. |..+..+++.. +. +++++|.++.-.+.+++......+...+  ..++     .+..+.||+|+
T Consensus        82 ~~~~~~iLDiGcG~-G~~~~~l~~~~~~~-~~~giD~s~~~~~~a~~~~~~~~~~~~d--~~~l-----~~~~~sfD~v~  152 (268)
T d1p91a_          82 DDKATAVLDIGCGE-GYYTHAFADALPEI-TTFGLDVSKVAIKAAAKRYPQVTFCVAS--SHRL-----PFSDTSMDAII  152 (268)
T ss_dssp             CTTCCEEEEETCTT-STTHHHHHHTCTTS-EEEEEESCHHHHHHHHHHCTTSEEEECC--TTSC-----SBCTTCEEEEE
T ss_pred             CCCCCEEEEeCCCC-cHHHHHHHHHCCCC-EEEEecchHhhhhhhhcccccccceeee--hhhc-----cCCCCCEEEEe
Confidence            45778899888755 66666777664 56 8999999999888887643321111111  0111     11223799999


Q ss_pred             EccCCHHHHHHHHHHhhcCCceEEEEc
Q 016507          278 ECVGLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       278 d~~g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ....-.. +.++.+.|+++ |.++...
T Consensus       153 ~~~~~~~-~~e~~rvLkpg-G~l~~~~  177 (268)
T d1p91a_         153 RIYAPCK-AEELARVVKPG-GWVITAT  177 (268)
T ss_dssp             EESCCCC-HHHHHHHEEEE-EEEEEEE
T ss_pred             ecCCHHH-HHHHHHHhCCC-cEEEEEe
Confidence            6554444 88999999998 9988765

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.57  E-value=0.17  Score=43.43  Aligned_cols=43  Identities=19%  Similarity=0.176  Sum_probs=32.9

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch--HHHHHHHcC
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE--KFEIGKRFG  246 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~--~~~~~~~lg  246 (388)
                      .+|||+|+ |-+|..++..+...|+ +|+++++...  ..+.++.++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~-~V~~~~r~~~~~~~~~l~~~~   46 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGY-RVHGLVARRSSDTRWRLRELG   46 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCCSSCCCHHHHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcC-EEEEEECCCCcccHHHHHHhc
Confidence            47999997 9999999998888899 9999987542  234444444

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.51  E-value=0.14  Score=44.40  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=30.5

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      ..+|+|+|||..|+.++..+...|. +|.+++.++.
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~-~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGH-QVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTC-EEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCC-CEEEEECCCC
Confidence            4689999999999999999888898 9999987653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=90.44  E-value=0.12  Score=42.74  Aligned_cols=31  Identities=35%  Similarity=0.456  Sum_probs=27.6

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      |+|+|+|+.|++++..+...|. +|+++++.+
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~-~V~liEk~~   35 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGA-NVLLLDKGN   35 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            8899999999998888888899 999998765

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=90.42  E-value=1.2  Score=34.19  Aligned_cols=95  Identities=20%  Similarity=0.154  Sum_probs=53.2

Q ss_pred             CCCCCCEEEEEcc--chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-EEEcCCCCCCccHHHHHHhhcC
Q 016507          198 NVEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       198 ~~~~~~~VlI~Ga--g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .+.+|.+||=.++  |.+|+   ..+ ..|+ +|++++.+++..+.+++    ++.. .+...+.   ..+.. ......
T Consensus        38 ~~~~g~~vLDl~~G~G~~~i---~a~-~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~---d~~~~-~~~~~~  108 (171)
T d1ws6a1          38 RYPRRGRFLDPFAGSGAVGL---EAA-SEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPV---EVFLP-EAKAQG  108 (171)
T ss_dssp             HCTTCCEEEEETCSSCHHHH---HHH-HTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCH---HHHHH-HHHHTT
T ss_pred             cccCCCeEEEeccccchhhh---hhh-hccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeeh---hcccc-cccccC
Confidence            4678899988754  55554   333 3588 89999999988776653    5553 3443332   22222 222333


Q ss_pred             CCccEEEE----ccCCHHHHHHHHH--HhhcCCceEEE
Q 016507          271 GGADYCFE----CVGLASLVQEAYA--CCRKGWGKTIV  302 (388)
Q Consensus       271 g~~dvvid----~~g~~~~~~~~~~--~l~~~~G~~v~  302 (388)
                      +.||+||-    ..+....+..++.  .++++ |.++.
T Consensus       109 ~~fD~If~DPPY~~~~~~~l~~l~~~~ll~~~-g~ivi  145 (171)
T d1ws6a1         109 ERFTVAFMAPPYAMDLAALFGELLASGLVEAG-GLYVL  145 (171)
T ss_dssp             CCEEEEEECCCTTSCTTHHHHHHHHHTCEEEE-EEEEE
T ss_pred             CccceeEEccccccCHHHHHHHHHHcCCcCCC-eEEEE
Confidence            38999974    1222232444433  36664 65543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=90.38  E-value=0.072  Score=40.72  Aligned_cols=83  Identities=7%  Similarity=-0.134  Sum_probs=50.8

Q ss_pred             EEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCHHH
Q 016507          206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLASL  285 (388)
Q Consensus       206 lI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~~~  285 (388)
                      -++|+|.+|.+.++.++..+. .+.+..|++++.+.+.+.+.....+..+     .        -...|+||-|+.... 
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~-~~~v~~R~~~~~~~l~~~~~~~~~~~~~-----~--------~~~~DiVil~v~d~~-   67 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYE-IGYILSRSIDRARNLAEVYGGKAATLEK-----H--------PELNGVVFVIVPDRY-   67 (153)
T ss_dssp             EEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCC-----C--------CC---CEEECSCTTT-
T ss_pred             EEEeCcHHHHHHHHHHHhCCC-EEEEEeCChhhhcchhhcccccccchhh-----h--------hccCcEEEEeccchh-
Confidence            467999999998876655332 3456788999888777765433322211     1        026799999998766 


Q ss_pred             HHHHHHHhhcCCce-EEEEc
Q 016507          286 VQEAYACCRKGWGK-TIVLG  304 (388)
Q Consensus       286 ~~~~~~~l~~~~G~-~v~~g  304 (388)
                      +...+..+... +. ++.+.
T Consensus        68 i~~v~~~l~~~-~~ivi~~s   86 (153)
T d2i76a2          68 IKTVANHLNLG-DAVLVHCS   86 (153)
T ss_dssp             HHHHHTTTCCS-SCCEEECC
T ss_pred             hhHHHhhhccc-ceeeeecc
Confidence            77778888754 44 44444

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.29  E-value=0.14  Score=38.96  Aligned_cols=34  Identities=18%  Similarity=0.242  Sum_probs=29.9

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      -.|.+|||+|+|.+|..-+..+...|+ +|+++..
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA-~VtVvap   44 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGC-KLTLVSP   44 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTC-EEEEEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence            368899999999999999999999999 8888853

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.28  E-value=0.47  Score=36.91  Aligned_cols=43  Identities=21%  Similarity=0.169  Sum_probs=36.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV  247 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga  247 (388)
                      +|-|+|.|.+|...+.-+...|+ +|.+.++++++.+.+.+.+.
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~-~V~~~dr~~~~~~~l~~~~~   45 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGF-KVAVFNRTYSKSEEFMKANA   45 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHTT
T ss_pred             EEEEEeehHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHcCC
Confidence            47789999999998888888899 89999999999988766553

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=90.14  E-value=0.17  Score=40.40  Aligned_cols=89  Identities=21%  Similarity=0.276  Sum_probs=56.7

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .|.+|.|+|.|.+|...+++++.+|+ +|++.++..... .....+....        .++.+.+.     ..|+|.-+.
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~-~~~~~~~~~~--------~~l~~ll~-----~sD~i~~~~  112 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGF-NVLFYDPYLSDG-VERALGLQRV--------STLQDLLF-----HSDCVTLHC  112 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCTT-HHHHHTCEEC--------SSHHHHHH-----HCSEEEECC
T ss_pred             eCceEEEeccccccccceeeeecccc-ceeeccCccccc-chhhhccccc--------cchhhccc-----cCCEEEEee
Confidence            57899999999999999999999999 999998754432 2223333211        23443333     357776655


Q ss_pred             CCHHH-----HHHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL-----VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~-----~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .....     -...++.++++ ..+|.++.
T Consensus       113 plt~~T~~li~~~~l~~mk~~-a~lIN~sR  141 (193)
T d1mx3a1         113 GLNEHNHHLINDFTVKQMRQG-AFLVNTAR  141 (193)
T ss_dssp             CCCTTCTTSBSHHHHTTSCTT-EEEEECSC
T ss_pred             cccccchhhhhHHHHhccCCC-CeEEecCC
Confidence            43210     13556677775 66666653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=89.93  E-value=0.11  Score=43.80  Aligned_cols=32  Identities=31%  Similarity=0.387  Sum_probs=28.6

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +|+|+|+|..|+.++..+...|+ +|++++.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~-~V~vlE~~~   33 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGT-DAVLLESSA   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            48999999999999999998999 899998754

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=89.92  E-value=0.34  Score=37.37  Aligned_cols=95  Identities=19%  Similarity=0.255  Sum_probs=63.8

Q ss_pred             ccccchhhhhHHHHHHhcC-CCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTAN-VEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~-~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  257 (388)
                      ..+||+....+.. ++..+ --.|.+|+|+|- ..+|.-+..++...|+ .|+.+.+..                     
T Consensus        15 ~~~PcTp~aI~~l-L~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~ga-tVt~~h~~t---------------------   71 (166)
T d1b0aa1          15 RLRPCTPRGIVTL-LERYNIDTFGLNAVVIGASNIVGRPMSMELLLAGC-TTTVTHRFT---------------------   71 (166)
T ss_dssp             SSCCHHHHHHHHH-HHHTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTC-EEEEECSSC---------------------
T ss_pred             CCCCchHHHHHHH-HHHcCcccccceEEEEeccccccHHHHHHHHHhhc-ccccccccc---------------------
Confidence            3566665555543 34344 347899999996 6789999999999999 888775422                     


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       .++.+.++     ..|+++-++|.+..+.  -+.++++ ..++.+|..
T Consensus        72 -~~l~~~~~-----~ADivI~a~G~p~~i~--~~~vk~g-~vvIDvGi~  111 (166)
T d1b0aa1          72 -KNLRHHVE-----NADLLIVAVGKPGFIP--GDWIKEG-AIVIDVGIN  111 (166)
T ss_dssp             -SCHHHHHH-----HCSEEEECSCCTTCBC--TTTSCTT-CEEEECCCE
T ss_pred             -chhHHHHh-----hhhHhhhhccCccccc--ccccCCC-cEEEecCce
Confidence             23333332     5789999998776332  2356776 778888764

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.90  E-value=0.13  Score=40.28  Aligned_cols=30  Identities=30%  Similarity=0.223  Sum_probs=27.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      .|+|+|+|+.|+.|+..+...|. +|.++++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~-~v~iie~   32 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGI-RTGLMGE   32 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTC-CEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCC-eEEEEEE
Confidence            48999999999999999999999 8888874

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.89  E-value=0.26  Score=40.66  Aligned_cols=89  Identities=13%  Similarity=0.156  Sum_probs=56.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc-EEEcCCCCCCccHHHHHHhhc-CCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT-EFVNSKNCGDKSVSQIIIDMT-DGGA  273 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~-~v~~~~~~~~~~~~~~i~~~~-~g~~  273 (388)
                      .++.+||=+|.|. |..+..+++. |. +|++++.|++-++.+++    .+.. .++. .+     .    ..+. .+.|
T Consensus        36 ~~~~~vLDiGCG~-G~~~~~l~~~-g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~-~d-----~----~~~~~~~~f  102 (246)
T d1y8ca_          36 LVFDDYLDLACGT-GNLTENLCPK-FK-NTWAVDLSQEMLSEAENKFRSQGLKPRLAC-QD-----I----SNLNINRKF  102 (246)
T ss_dssp             CCTTEEEEETCTT-STTHHHHGGG-SS-EEEEECSCHHHHHHHHHHHHHTTCCCEEEC-CC-----G----GGCCCSCCE
T ss_pred             CCCCeEEEEeCcC-CHHHHHHHHh-CC-ccEeeccchhhhhhccccccccCccceeec-cc-----h----hhhcccccc
Confidence            4467899998763 6666666664 77 89999999988777654    2332 2332 11     1    1222 3389


Q ss_pred             cEEEEccC------CH----HHHHHHHHHhhcCCceEEE
Q 016507          274 DYCFECVG------LA----SLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       274 dvvid~~g------~~----~~~~~~~~~l~~~~G~~v~  302 (388)
                      |+|+...+      ..    ..++.+.+.|+++ |.++.
T Consensus       103 D~i~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg-G~~i~  140 (246)
T d1y8ca_         103 DLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG-GVFIF  140 (246)
T ss_dssp             EEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE-EEEEE
T ss_pred             cccceeeeeeeccCCHHHHHHHHHHHHHhCCCC-eEEEE
Confidence            99986422      11    2366777888997 98774

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.84  E-value=0.9  Score=39.98  Aligned_cols=92  Identities=16%  Similarity=0.152  Sum_probs=62.0

Q ss_pred             EEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE----------------EEcCCCCCCccHHHHH
Q 016507          206 VIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE----------------FVNSKNCGDKSVSQII  265 (388)
Q Consensus       206 lI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~----------------v~~~~~~~~~~~~~~i  265 (388)
                      ++.+-++.|..++.+|+..|+.+|++.|.+++-.+++++    .+...                .++..     +.- .+
T Consensus        49 vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~-----Da~-~~  122 (375)
T d2dula1          49 VLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHD-----DAN-RL  122 (375)
T ss_dssp             EEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEES-----CHH-HH
T ss_pred             EEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehh-----hhh-hh
Confidence            444557789999999998898899999999988888764    22211                11111     122 22


Q ss_pred             HhhcCCCccEE-EEccCCH-HHHHHHHHHhhcCCceEEEEc
Q 016507          266 IDMTDGGADYC-FECVGLA-SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       266 ~~~~~g~~dvv-id~~g~~-~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      ....+..||+| +|..|++ .-++.++++++.+ |.+....
T Consensus       123 ~~~~~~~fDvIDiDPfGs~~pfldsAi~a~~~~-Gll~vTa  162 (375)
T d2dula1         123 MAERHRYFHFIDLDPFGSPMEFLDTALRSAKRR-GILGVTA  162 (375)
T ss_dssp             HHHSTTCEEEEEECCSSCCHHHHHHHHHHEEEE-EEEEEEE
T ss_pred             hHhhcCcCCcccCCCCCCcHHHHHHHHHHhccC-CEEEEEe
Confidence            22223379987 9998875 4478999999885 6665544

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=89.80  E-value=1.4  Score=33.92  Aligned_cols=92  Identities=22%  Similarity=0.326  Sum_probs=57.4

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEEEEcC---CchHHHHHHHc----CC---c---------------EEEcCCCCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDV---ISEKFEIGKRF----GV---T---------------EFVNSKNCG  257 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~~---~~~~~~~~~~l----ga---~---------------~v~~~~~~~  257 (388)
                      +|.|.|-|-+|.++...+-.. .. +++++-.   +.+...++.++    |-   +               .+++.++  
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~-~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~~~~~~~--   79 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKV-DIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERD--   79 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSS-EEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSS--
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCc-EEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEECCEEEEEEECCC--
Confidence            689999999999999877644 46 7777733   22444444432    21   1               0122222  


Q ss_pred             CccHHHHHHhhcCC--CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          258 DKSVSQIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g--~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                             ..++-.+  ++|+|+||+|.-...+.+...+..+ .+-+.+...
T Consensus        80 -------p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSaP  122 (169)
T d1u8fo1          80 -------PSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISAP  122 (169)
T ss_dssp             -------GGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESSC
T ss_pred             -------hhhCCccccCCCEEEEecceeccHHHHHHHHhcC-CceEeeccc
Confidence                   1122222  8999999999765567777788886 777777653

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=89.78  E-value=0.74  Score=39.81  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=32.3

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      +..+|||+|+ |.+|...+..+...|+ +|+++.++.++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~-~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGH-HVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTC-CEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCC-eEEEEECCcchh
Confidence            4578999997 9999999999988999 899998876543

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=1.7  Score=32.96  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=54.3

Q ss_pred             EEEEEccchhHHH-HHHHHHH-cCCcEEEE-EcCCchHH-HHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEc
Q 016507          204 TVVIFGLGSIGLA-VAEGARL-CGATRIIG-VDVISEKF-EIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFEC  279 (388)
Q Consensus       204 ~VlI~Gag~vG~~-ai~la~~-~g~~~Vi~-~~~~~~~~-~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~  279 (388)
                      +|.|+|.|.+|.- .+...+. -++ ++++ .++++++. ++.+++++.. +       ..+.+ +.    ..+|+|+-|
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~-~i~~v~d~~~~~~~~~~~~~~~~~-~-------~~~~~-l~----~~~D~V~I~   68 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDW-TLQGAWSPTRAKALPICESWRIPY-A-------DSLSS-LA----ASCDAVFVH   68 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSE-EEEEEECSSCTTHHHHHHHHTCCB-C-------SSHHH-HH----TTCSEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCc-EEEEEEechhHhhhhhhhcccccc-c-------ccchh-hh----hhccccccc
Confidence            5889999999964 5665554 466 5554 45666554 4455677642 1       12222 22    268999999


Q ss_pred             cCCHHHHHHHHHHhhcCCceEEEE
Q 016507          280 VGLASLVQEAYACCRKGWGKTIVL  303 (388)
Q Consensus       280 ~g~~~~~~~~~~~l~~~~G~~v~~  303 (388)
                      +......+.+..++..+  .=+.+
T Consensus        69 tp~~~h~~~~~~al~~g--k~V~~   90 (164)
T d1tlta1          69 SSTASHFDVVSTLLNAG--VHVCV   90 (164)
T ss_dssp             SCTTHHHHHHHHHHHTT--CEEEE
T ss_pred             ccchhcccccccccccc--ceeec
Confidence            98887788888888874  44444

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.69  E-value=0.54  Score=39.76  Aligned_cols=76  Identities=20%  Similarity=0.175  Sum_probs=43.4

Q ss_pred             EEEEcc-chhHHHHHHHHHHcCCc--EEEEEcCCchHHH----HHHHc---CCcE---EEcCCCCCCccHHHHHHhhcCC
Q 016507          205 VVIFGL-GSIGLAVAEGARLCGAT--RIIGVDVISEKFE----IGKRF---GVTE---FVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       205 VlI~Ga-g~vG~~ai~la~~~g~~--~Vi~~~~~~~~~~----~~~~l---ga~~---v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      |||+|+ +++|.+.++.+...|++  .|+.+.++.++.+    .++.+   +...   ..|-.+  .++..+.+.+...|
T Consensus         5 vlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~--~~~~~~~~~~~~~g   82 (285)
T d1jtva_           5 VLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRD--SKSVAAARERVTEG   82 (285)
T ss_dssp             EEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTC--HHHHHHHHHTCTTS
T ss_pred             EEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccc--hHhhhhhhhhcccc
Confidence            466687 99999998888888883  2334444433332    22332   2221   234433  23344444444445


Q ss_pred             CccEEEEccCC
Q 016507          272 GADYCFECVGL  282 (388)
Q Consensus       272 ~~dvvid~~g~  282 (388)
                      ..|+++++.|.
T Consensus        83 ~idilvnnag~   93 (285)
T d1jtva_          83 RVDVLVCNAGL   93 (285)
T ss_dssp             CCSEEEECCCC
T ss_pred             chhhhhhcccc
Confidence            89999998864

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.68  E-value=0.087  Score=41.79  Aligned_cols=35  Identities=20%  Similarity=0.218  Sum_probs=30.0

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      ++..|+|+|+|+.|+.++..+...|. +|+++++.+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~-~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANL-QPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTC-CCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCC-ceEEEEeec
Confidence            45679999999999999999999999 888887544

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=89.67  E-value=0.31  Score=37.20  Aligned_cols=40  Identities=20%  Similarity=0.197  Sum_probs=33.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      ++..+|.|+|+|.+|...+.++...+..+++.++.++++.
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~   44 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMP   44 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccc
Confidence            4567999999999999888887877866899999887654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=89.60  E-value=0.7  Score=36.71  Aligned_cols=72  Identities=24%  Similarity=0.359  Sum_probs=46.0

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC-cEEEcCCCCCCccHHHHHHhhcCCC
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV-TEFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga-~~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      ....++ .|++||=.|.|. |.+++. +...|+++|++++.+++..+.+++.-. -.++..      ++    .+ ..+.
T Consensus        42 ~~~~dl-~Gk~VLDlGcGt-G~l~i~-a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~------D~----~~-l~~~  107 (197)
T d1ne2a_          42 YNDGNI-GGRSVIDAGTGN-GILACG-SYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVA------DV----SE-ISGK  107 (197)
T ss_dssp             HHHTSS-BTSEEEEETCTT-CHHHHH-HHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEEC------CG----GG-CCCC
T ss_pred             HHcCCC-CCCEEEEeCCCC-cHHHHH-HHHcCCCcccccccCHHHHHHHHHccccccEEEE------eh----hh-cCCc
Confidence            333344 689999998754 554444 444677689999999998888877432 233332      11    11 2358


Q ss_pred             ccEEEEc
Q 016507          273 ADYCFEC  279 (388)
Q Consensus       273 ~dvvid~  279 (388)
                      ||+||-.
T Consensus       108 fD~Vi~N  114 (197)
T d1ne2a_         108 YDTWIMN  114 (197)
T ss_dssp             EEEEEEC
T ss_pred             ceEEEeC
Confidence            9999864

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.45  E-value=0.55  Score=38.04  Aligned_cols=103  Identities=15%  Similarity=0.133  Sum_probs=63.4

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHH----cCCcEEEcCCCCCCccHHHHHHh
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKR----FGVTEFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~----lga~~v~~~~~~~~~~~~~~i~~  267 (388)
                      ....+.....+||-+|.+ .|..++.+|+.+  +. +|+.++.+++..+.+++    .|....+....   .+..+.+.+
T Consensus        52 ~~L~~~~~~k~vLEiGt~-~GyStl~~a~al~~~g-~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~---Gda~e~l~~  126 (219)
T d2avda1          52 ANLARLIQAKKALDLGTF-TGYSALALALALPADG-RVVTCEVDAQPPELGRPLWRQAEAEHKIDLRL---KPALETLDE  126 (219)
T ss_dssp             HHHHHHTTCCEEEEECCT-TSHHHHHHHTTSCTTC-EEEEEESCSHHHHHHHHHHHHTTCTTTEEEEE---SCHHHHHHH
T ss_pred             HHHHHccCCCeEEEEech-hhHHHHHHHHhCCCCc-eEEEEeechhHHHHHHHHHHhcCccceEEEEE---eehhhcchh
Confidence            344556677899999863 367777788765  34 99999999988777664    35432222111   223333333


Q ss_pred             h----cCCCccEEEEccC-CH--HHHHHHHHHhhcCCceEEE
Q 016507          268 M----TDGGADYCFECVG-LA--SLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       268 ~----~~g~~dvvid~~g-~~--~~~~~~~~~l~~~~G~~v~  302 (388)
                      +    ..+.||.||--.. ..  ..++.+++.|++| |.++.
T Consensus       127 ~~~~~~~~~fD~ifiD~dk~~y~~~~~~~~~lL~~G-Gvii~  167 (219)
T d2avda1         127 LLAAGEAGTFDVAVVDADKENCSAYYERCLQLLRPG-GILAV  167 (219)
T ss_dssp             HHHTTCTTCEEEEEECSCSTTHHHHHHHHHHHEEEE-EEEEE
T ss_pred             hhhhcccCCccEEEEeCCHHHHHHHHHHHHHHhcCC-cEEEE
Confidence            2    2337999964333 22  3377899999995 66654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=89.45  E-value=0.15  Score=41.23  Aligned_cols=32  Identities=28%  Similarity=0.278  Sum_probs=28.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      -|+|+|+|+.|+.++..+...|. +|++++..+
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~G~-kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQLGF-KTTCIEKRG   36 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTC-CEEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            48899999999999999999999 899987643

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.43  E-value=0.067  Score=46.76  Aligned_cols=95  Identities=21%  Similarity=0.263  Sum_probs=53.7

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCc---EEEcCCCCCCccHHHHHHh
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVT---EFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~---~v~~~~~~~~~~~~~~i~~  267 (388)
                      +.....+|.+||-+|.|. |.+++.+|+ .|+++|++++.++ ..+.++    +.+..   .++..+-   .++     .
T Consensus        32 ~~~~~~~~~~VLDlGcGt-G~ls~~aa~-~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~---~~l-----~  100 (328)
T d1g6q1_          32 QNKDLFKDKIVLDVGCGT-GILSMFAAK-HGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL---EDV-----H  100 (328)
T ss_dssp             HHHHHHTTCEEEEETCTT-SHHHHHHHH-TCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCT---TTS-----C
T ss_pred             hccccCCcCEEEEeCCCC-CHHHHHHHH-hCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeeh---hhc-----c
Confidence            334566899999998764 666655555 5777999999875 333332    33432   1232221   111     1


Q ss_pred             hcCCCccEEEEccC-----C---H-HHHHHHHHHhhcCCceEE
Q 016507          268 MTDGGADYCFECVG-----L---A-SLVQEAYACCRKGWGKTI  301 (388)
Q Consensus       268 ~~~g~~dvvid~~g-----~---~-~~~~~~~~~l~~~~G~~v  301 (388)
                      +....+|+|+....     .   . ..+...-+.|+++ |.++
T Consensus       101 ~~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~Lkpg-G~ii  142 (328)
T d1g6q1_         101 LPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEG-GLIF  142 (328)
T ss_dssp             CSSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             CcccceeEEEEEecceeeccchhHHHHHHHHHhccCCC-eEEE
Confidence            11237999976321     1   1 2234445788997 8875

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.32  E-value=0.17  Score=41.19  Aligned_cols=31  Identities=16%  Similarity=0.335  Sum_probs=27.9

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      |+|+|+|..|+.++..+...|. +|.+++..+
T Consensus         8 viViGaG~~Gl~~A~~La~~G~-~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGK-KVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEcCCC
Confidence            8899999999999888888898 999998865

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.27  E-value=1.4  Score=33.97  Aligned_cols=93  Identities=19%  Similarity=0.227  Sum_probs=52.6

Q ss_pred             EEEEEccchhHHHHHHHHHHcC---CcEEEEEcCCc--hHHHHHHHc----C---Cc----------------EEEcCCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCG---ATRIIGVDVIS--EKFEIGKRF----G---VT----------------EFVNSKN  255 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g---~~~Vi~~~~~~--~~~~~~~~l----g---a~----------------~v~~~~~  255 (388)
                      +|.|.|-|-+|.++...+....   . .|+++-...  +...++-++    |   .+                .++..++
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i-~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~~   80 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPL-DVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDRN   80 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSE-EEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCE-EEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCCC
Confidence            5889999999999998765433   4 566653222  233333221    1   11                0111222


Q ss_pred             CCCccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          256 CGDKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       256 ~~~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                        ..++  .+.+.   ++|+|+||+|.-...+.+...+..+ .+-|.+..
T Consensus        81 --p~~i--~W~~~---gvDiViEcTG~f~~~~~~~~hl~~G-akkViiSA  122 (172)
T d1rm4a1          81 --PVNL--PWGDM---GIDLVIEGTGVFVDRDGAGKHLQAG-AKKVLITA  122 (172)
T ss_dssp             --GGGS--CHHHH---TCCEEEECSSSCCBHHHHHHHHHTT-CSCEEESS
T ss_pred             --hHHC--Chhhc---CCCEEEecCceEccHHHHHHHHhcC-CceEEeec
Confidence              0110  11222   8999999999754466777778776 65555554

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.25  E-value=0.75  Score=39.60  Aligned_cols=102  Identities=16%  Similarity=0.130  Sum_probs=66.0

Q ss_pred             CCCCEEEEEccchhHHHHHHHHH-HcCCcEEEEEcCCchHHHHH----HHcCCcEEEcCCCCCCccHHHHHHhhcCCCcc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGAR-LCGATRIIGVDVISEKFEIG----KRFGVTEFVNSKNCGDKSVSQIIIDMTDGGAD  274 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~-~~g~~~Vi~~~~~~~~~~~~----~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~d  274 (388)
                      +...++.|+|+|..+...++.+. ....++|.+..+++++.+.+    +..+.....+        ..+.+     .+.|
T Consensus       123 ~~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~--------~~~a~-----~~aD  189 (320)
T d1omoa_         123 KNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQ--------PAEEA-----SRCD  189 (320)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEEC--------CHHHH-----TSSS
T ss_pred             CCccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccc--------hhhhh-----cccc
Confidence            44578899999999988777665 46788999999998876543    2344443322        12222     1789


Q ss_pred             EEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHH
Q 016507          275 YCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSF  317 (388)
Q Consensus       275 vvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~  317 (388)
                      +|+-|+.+...+ --.+.++++ -++..+|.... ..-.++..
T Consensus       190 iV~taT~s~~P~-~~~~~l~~G-~hv~~iGs~~p-~~~Eld~~  229 (320)
T d1omoa_         190 VLVTTTPSRKPV-VKAEWVEEG-THINAIGADGP-GKQELDVE  229 (320)
T ss_dssp             EEEECCCCSSCC-BCGGGCCTT-CEEEECSCCST-TCCCBCHH
T ss_pred             EEEEeccCcccc-cchhhcCCC-CeEeecCCccc-cccccCHH
Confidence            999988865422 112468887 88889987543 22345533

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.12  E-value=0.54  Score=34.51  Aligned_cols=62  Identities=19%  Similarity=0.201  Sum_probs=49.9

Q ss_pred             HHHhcCCCCCCEEEEE-ccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          193 AWRTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~-Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      +++.+++..-+.+++. ..-..-+++.++++.+|..++++...+++..+.++++|++.++++.
T Consensus        57 ~l~~~~i~~a~~vv~~t~~d~~N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~d~vi~p~  119 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGKEEVNLMSSLLAKSYGINKTIARISEIEYKDVFERLGVDVVVSPE  119 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSCHHHHHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTCSEEECHH
T ss_pred             hhhhcChhhhhhhcccCCcHHHHHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCCCEEECHH
Confidence            4567788877767665 4455567888899999988899998899999999999999998754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.07  E-value=0.29  Score=39.20  Aligned_cols=40  Identities=38%  Similarity=0.591  Sum_probs=35.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      +|.|+|.|-+|+.++..+...|. +|+++|.++++.+.+.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~-~V~g~D~n~~~i~~ln~   41 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGH-EVIGVDVSSTKIDLINQ   41 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCCHhHHHHHHHHHhCCC-cEEEEeCCHHHHHHhcc
Confidence            58899999999998888888898 99999999988887765

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=88.90  E-value=0.31  Score=41.03  Aligned_cols=31  Identities=23%  Similarity=0.222  Sum_probs=24.7

Q ss_pred             EEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       205 VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +||+|+ +++|.+.++.+...|+ +|+.+++..
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga-~V~i~~~~~   36 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGY-AVCLHYHRS   36 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTC-EEEEEESSC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCC
Confidence            466687 9999999999889999 887765543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.86  E-value=1.1  Score=37.84  Aligned_cols=98  Identities=13%  Similarity=0.139  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC----------cEEEcCCCCCCccHHHHHHhh
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----------TEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga----------~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      ....++|||+|+|. |..+-.++++.+..+|.+++-+++-.+.++++-.          -.++.      .+-.+.+++ 
T Consensus        76 ~~~pk~vLiiGgG~-G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~------~Da~~~l~~-  147 (285)
T d2o07a1          76 HPNPRKVLIIGGGD-GGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHV------GDGFEFMKQ-  147 (285)
T ss_dssp             SSSCCEEEEEECTT-SHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHHHT-
T ss_pred             CcCcCeEEEeCCCc-hHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEE------ccHHHHHhc-
Confidence            44568999998755 5556677787776699999999988888776320          12222      223344443 


Q ss_pred             cCCCccEEE-EccC---------CHHHHHHHHHHhhcCCceEEEEcc
Q 016507          269 TDGGADYCF-ECVG---------LASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       269 ~~g~~dvvi-d~~g---------~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.+.||+|| |...         +..-.+.+-+.|+++ |.++.-+.
T Consensus       148 ~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~-Gi~v~q~~  193 (285)
T d2o07a1         148 NQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKED-GVLCCQGE  193 (285)
T ss_dssp             CSSCEEEEEEECC-----------CHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             CCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCC-CeEEEecc
Confidence            344899996 3322         112366778899997 99887654

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=88.75  E-value=0.53  Score=41.22  Aligned_cols=73  Identities=15%  Similarity=0.197  Sum_probs=42.7

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc--hHHHHHHHcC----CcE-EEcCCCCCCccHHHHHHhhcCCCccE
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVIS--EKFEIGKRFG----VTE-FVNSKNCGDKSVSQIIIDMTDGGADY  275 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~--~~~~~~~~lg----a~~-v~~~~~~~~~~~~~~i~~~~~g~~dv  275 (388)
                      +|||+|+ |-+|...+..+...|+..|++++...  .+.+.+..+.    ... ..|-.+  ...+.+.+...   .+|+
T Consensus         2 kILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d--~~~l~~~~~~~---~~d~   76 (361)
T d1kewa_           2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD--SAEITRIFEQY---QPDA   76 (361)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTC--HHHHHHHHHHH---CCSE
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCC--HHHHHHHHHhC---CCCE
Confidence            6999987 99999999988888885677776422  1222222221    111 123222  12233333322   7999


Q ss_pred             EEEccC
Q 016507          276 CFECVG  281 (388)
Q Consensus       276 vid~~g  281 (388)
                      ||+++.
T Consensus        77 VihlAa   82 (361)
T d1kewa_          77 VMHLAA   82 (361)
T ss_dssp             EEECCS
T ss_pred             EEECcc
Confidence            999975

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.66  E-value=0.37  Score=37.93  Aligned_cols=88  Identities=24%  Similarity=0.283  Sum_probs=58.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .+.++.|+|.|.+|...+++++.+|+ +|++.++...+... ...+...         .++.+.+.     ..|+|.-+.
T Consensus        43 ~~k~vgiiG~G~IG~~va~~~~~fg~-~v~~~d~~~~~~~~-~~~~~~~---------~~l~ell~-----~sDiv~~~~  106 (184)
T d1ygya1          43 FGKTVGVVGLGRIGQLVAQRIAAFGA-YVVAYDPYVSPARA-AQLGIEL---------LSLDDLLA-----RADFISVHL  106 (184)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTC-EEEEECTTSCHHHH-HHHTCEE---------CCHHHHHH-----HCSEEEECC
T ss_pred             cceeeeeccccchhHHHHHHhhhccc-eEEeecCCCChhHH-hhcCcee---------ccHHHHHh-----hCCEEEEcC
Confidence            47899999999999999999999999 99999876554333 2333321         22433333     468887766


Q ss_pred             CCHHH-----HHHHHHHhhcCCceEEEEcc
Q 016507          281 GLASL-----VQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~-----~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +....     -...++.++++ ..+|.++.
T Consensus       107 Plt~~T~~lin~~~l~~mk~~-a~lIN~sR  135 (184)
T d1ygya1         107 PKTPETAGLIDKEALAKTKPG-VIIVNAAR  135 (184)
T ss_dssp             CCSTTTTTCBCHHHHTTSCTT-EEEEECSC
T ss_pred             CCCchhhhhhhHHHHhhhCCC-ceEEEecc
Confidence            53311     13666777775 67776653

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=88.65  E-value=0.39  Score=39.64  Aligned_cols=35  Identities=34%  Similarity=0.375  Sum_probs=30.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      --.|.+|+|-|.|.+|..+++++...|+ +|+++..
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L~~~Ga-kvv~vsD   62 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWLEKMGA-KVIAVSD   62 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTC-EEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEeec
Confidence            3478899999999999999999999999 8887753

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=88.65  E-value=0.45  Score=41.07  Aligned_cols=98  Identities=12%  Similarity=0.054  Sum_probs=59.8

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE--EEcCCCCCCccHHHHHHhhc--C
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE--FVNSKNCGDKSVSQIIIDMT--D  270 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~--v~~~~~~~~~~~~~~i~~~~--~  270 (388)
                      ..+|++||=.++|. |..++.+|+  |+.+|++++.++...+.++.    .|.+.  ++.      .+..+.+..+.  +
T Consensus       143 ~~~g~rVLDl~~gt-G~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~------~d~~~~~~~~~~~~  213 (318)
T d1wxxa2         143 RFRGERALDVFSYA-GGFALHLAL--GFREVVAVDSSAEALRRAEENARLNGLGNVRVLE------ANAFDLLRRLEKEG  213 (318)
T ss_dssp             GCCEEEEEEETCTT-THHHHHHHH--HEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEE------SCHHHHHHHHHHTT
T ss_pred             HhCCCeeeccCCCC-cHHHHHHHh--cCCcEEeecchHHHHHHHHHHHHHcCCCCcceee------ccHHHHhhhhHhhh
Confidence            44688998886644 333445554  33499999999998887764    45542  232      22333333322  2


Q ss_pred             CCccEEEEccC-----C----------HHHHHHHHHHhhcCCceEEEEccC
Q 016507          271 GGADYCFECVG-----L----------ASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       271 g~~dvvid~~g-----~----------~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                      +.||+|+---+     .          ...+..+++.|+++ |.++.+..+
T Consensus       214 ~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpG-G~Lv~~scs  263 (318)
T d1wxxa2         214 ERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEG-GILATASCS  263 (318)
T ss_dssp             CCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEE-EEEEEEECC
T ss_pred             cCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeCC
Confidence            38999974211     1          12356788889997 998887653

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.57  E-value=0.18  Score=40.57  Aligned_cols=30  Identities=23%  Similarity=0.327  Sum_probs=27.4

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      |+|+|+|+.|+.++..|..+|. +|.+++..
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~-kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQ-KCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            7899999999999999999999 89999764

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=88.47  E-value=0.21  Score=42.76  Aligned_cols=32  Identities=22%  Similarity=0.287  Sum_probs=28.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .|+|+|||..|++++..++..|. .|++++..+
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~G~-~v~i~Ek~~   40 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLRELGR-SVHVIETAG   40 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECccHHHHHHHHHHHhCCC-CEEEEEcCC
Confidence            58999999999999999999999 899998754

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.37  E-value=2.8  Score=33.10  Aligned_cols=122  Identities=16%  Similarity=0.128  Sum_probs=67.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchH----------HHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEK----------FEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~----------~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +|++.|.+..|..+++.+...|. +|.++.+.+.+          .+++++.+.. ++...+...+.+.+.+.++   .+
T Consensus         2 kiv~~~~~~~g~~~l~~L~~~g~-~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~-~~~~~~~~~~~~~~~i~~~---~~   76 (203)
T d2blna2           2 KTVVFAYHDMGCLGIEALLAAGY-EISAIFTHTDNPGEKAFYGSVARLAAERGIP-VYAPDNVNHPLWVERIAQL---SP   76 (203)
T ss_dssp             EEEEEECHHHHHHHHHHHHHTTC-EEEEEECCCC------CCCCHHHHHHHHTCC-EECCSCCCSHHHHHHHHHT---CC
T ss_pred             eEEEEecCHHHHHHHHHHHHCCC-CEEEEEcCCCCCCcccccCHHHHHHHHcCCc-ceecccccchhhhhhhhhh---cc
Confidence            57788988899999998888898 77665543322          3455666665 3332222235566666655   88


Q ss_pred             cEEEEccCCHHHHHHHHHHhhcCCceEEEEccCCCCCccccCHHHHHhcCcEEEEeeec
Q 016507          274 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQPGSQLSLSSFEVLHSGKILMGSLFG  332 (388)
Q Consensus       274 dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~  332 (388)
                      |+++-+......-...++ ..+. |.+..=.+..+...-..+....+.++....|..+.
T Consensus        77 Dlii~~g~~~ii~~~il~-~~~~-~~iN~H~slLP~yrG~~p~~wai~~g~~~~G~Tih  133 (203)
T d2blna2          77 DVIFSFYYRHLIYDEILQ-LAPA-GAFNLHGSLLPKYRGRAPLNWVLVNGETETGVTLH  133 (203)
T ss_dssp             SEEEEESCCSCCCHHHHT-TCTT-CEEEEESSCTTTTEESCHHHHHHHTTCSEEEEEEE
T ss_pred             cceeeeecccchhcccch-hhHH-HHHHHhhhcchhhhhhhhhhhhhhcccccccceeE
Confidence            999977655431233333 3343 56544333232222233333444555555555543

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.36  E-value=0.38  Score=36.66  Aligned_cols=36  Identities=28%  Similarity=0.458  Sum_probs=30.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .+++|+|+|+|.+|+=.+..+...|++.|+++.+.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            467899999999999999998889997888886643

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=88.07  E-value=0.23  Score=40.45  Aligned_cols=32  Identities=28%  Similarity=0.289  Sum_probs=28.4

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      -|+|+|+|+.|+.++..+...|. +|.+++..+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~-~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGL-KVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-eEEEEeccC
Confidence            47888999999999999999999 899997654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.06  E-value=0.48  Score=35.89  Aligned_cols=39  Identities=18%  Similarity=0.193  Sum_probs=32.8

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      |..+|.|+|+|.+|...+.++...+..+++.++.++++.
T Consensus         2 p~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~   40 (150)
T d1t2da1           2 PKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMP   40 (150)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcc
Confidence            457899999999999888888888887999999877653

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=87.86  E-value=1  Score=36.39  Aligned_cols=89  Identities=20%  Similarity=0.229  Sum_probs=57.0

Q ss_pred             EEEEEccchhHHH-HHHHHHH-cCCcEEE-EEcCCchHHH-HHHHcCCc--EEEcCCCCCCccHHHHHHhhcCC-CccEE
Q 016507          204 TVVIFGLGSIGLA-VAEGARL-CGATRII-GVDVISEKFE-IGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDG-GADYC  276 (388)
Q Consensus       204 ~VlI~Gag~vG~~-ai~la~~-~g~~~Vi-~~~~~~~~~~-~~~~lga~--~v~~~~~~~~~~~~~~i~~~~~g-~~dvv  276 (388)
                      +|.|+|.|.+|.- .+...+. -+. +|+ ++++++++.+ +.++++.+  .+..+++     +    .++... .+|+|
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~~~~-~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d-----~----~ell~~~~iD~V  104 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGCQHS-RIEALVSGNAEKAKIVAAEYGVDPRKIYDYSN-----F----DKIAKDPKIDAV  104 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTCSSE-EEEEEECSCHHHHHHHHHHTTCCGGGEECSSS-----G----GGGGGCTTCCEE
T ss_pred             EEEEEcCcHHHHHHHHHHHHhCCCc-eEEEEecCCHHHHHHHHHhhccccccccccCc-----h----hhhcccccceee
Confidence            7899999999863 4444443 366 555 5566666654 45556653  2333332     2    222223 89999


Q ss_pred             EEccCCHHHHHHHHHHhhcCCceEEEEc
Q 016507          277 FECVGLASLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       277 id~~g~~~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +-|+........+.+++..  |.=+.+.
T Consensus       105 ~I~tp~~~H~~~~~~al~~--gk~v~~E  130 (221)
T d1h6da1         105 YIILPNSLHAEFAIRAFKA--GKHVMCE  130 (221)
T ss_dssp             EECSCGGGHHHHHHHHHHT--TCEEEEC
T ss_pred             eeccchhhhhhHHHHhhhc--chhhhcC
Confidence            9999988778899999987  5555553

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.80  E-value=0.75  Score=35.53  Aligned_cols=95  Identities=15%  Similarity=0.259  Sum_probs=63.6

Q ss_pred             ccccchhhhhHHHHHHhcCCC-CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCC
Q 016507          180 CLLSCGVSTGVGAAWRTANVE-VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCG  257 (388)
Q Consensus       180 a~~~~~~~ta~~~l~~~~~~~-~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~  257 (388)
                      +.+||+....+. +.+..++. .|.+|+|+|. ..+|.-++.++...|+ .|+.+....                     
T Consensus        17 ~~~PcTp~aii~-lL~~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~ga-tVt~~~~~t---------------------   73 (170)
T d1a4ia1          17 CFIPCTPKGCLE-LIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNA-TVTTCHSKT---------------------   73 (170)
T ss_dssp             CCCCHHHHHHHH-HHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTC-EEEEECTTC---------------------
T ss_pred             CCCCChHHHHHH-HHHHhCcccccceEEEEecCCccchHHHHHHHhccC-ceEEEeccc---------------------
Confidence            456766665555 33444443 7899999996 7789999999999999 888876432                     


Q ss_pred             CccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          258 DKSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       258 ~~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                       .++.+.++     ..|+++-++|.+..+.  -..++++ -.++.+|..
T Consensus        74 -~~l~~~~~-----~aDivi~a~G~~~~i~--~~~vk~g-~iviDvgi~  113 (170)
T d1a4ia1          74 -AHLDEEVN-----KGDILVVATGQPEMVK--GEWIKPG-AIVIDCGIN  113 (170)
T ss_dssp             -SSHHHHHT-----TCSEEEECCCCTTCBC--GGGSCTT-CEEEECCCB
T ss_pred             -ccHHHHHh-----hccchhhccccccccc--cccccCC-CeEeccCcc
Confidence             22222221     5788888888775322  3467775 777777753

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.78  E-value=1.4  Score=37.37  Aligned_cols=97  Identities=15%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCC----------cEEEcCCCCCCccHHHHHHhhc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGV----------TEFVNSKNCGDKSVSQIIIDMT  269 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga----------~~v~~~~~~~~~~~~~~i~~~~  269 (388)
                      ...++|||+|+|. |..+-.++++.+..+|.+++.+++-.+.++++-.          -.++.      ++-.+.+++ +
T Consensus        88 ~~pk~VLiiGgG~-G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~------~Da~~~l~~-~  159 (295)
T d1inla_          88 PNPKKVLIIGGGD-GGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVI------ANGAEYVRK-F  159 (295)
T ss_dssp             SSCCEEEEEECTT-CHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEE------SCHHHHGGG-C
T ss_pred             CCCceEEEecCCc-hHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEh------hhHHHHHhc-C
Confidence            3457999998755 4556677777776699999999988888776321          02332      223344443 3


Q ss_pred             CCCccEEE-EccC----------CHHHHHHHHHHhhcCCceEEEEcc
Q 016507          270 DGGADYCF-ECVG----------LASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       270 ~g~~dvvi-d~~g----------~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .+.||+|| |+..          +..-.+.+.+.|+++ |.++.-..
T Consensus       160 ~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~-Gi~v~q~~  205 (295)
T d1inla_         160 KNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKED-GVFSAETE  205 (295)
T ss_dssp             SSCEEEEEEEC----------CCSHHHHHHHHHHEEEE-EEEEEECC
T ss_pred             CCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCC-cEEEEecC
Confidence            44899996 3321          224467889999997 98887654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.76  E-value=0.27  Score=40.67  Aligned_cols=33  Identities=30%  Similarity=0.497  Sum_probs=28.3

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      .|||+|+ +++|.+.++.+...|+ +|+.++++++
T Consensus         3 VvlITGas~GIG~aiA~~la~~Ga-~V~~~~~~~~   36 (257)
T d1fjha_           3 IIVISGCATGIGAATRKVLEAAGH-QIVGIDIRDA   36 (257)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSSS
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECChH
Confidence            4788887 9999999999999999 8999987653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.75  E-value=1.5  Score=36.66  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=60.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC-C---------------cEEEcCCCCCCccHH
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-V---------------TEFVNSKNCGDKSVS  262 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg-a---------------~~v~~~~~~~~~~~~  262 (388)
                      .....+|||+|+|. |..+-.++++- ..+|.+++.+++-.+.++++- .               -+++.      ++-.
T Consensus        70 ~~~p~~vLiiG~G~-G~~~~~~l~~~-~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~------~Da~  141 (276)
T d1mjfa_          70 HPKPKRVLVIGGGD-GGTVREVLQHD-VDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTI------GDGF  141 (276)
T ss_dssp             SSCCCEEEEEECTT-SHHHHHHTTSC-CSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEE------SCHH
T ss_pred             CCCCceEEEecCCc-hHHHHHHHHhC-CceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEE------ChHH
Confidence            45567999998754 33444555654 348999999998888887631 1               02332      2233


Q ss_pred             HHHHhhcCCCccEEEE-ccCC---------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          263 QIIIDMTDGGADYCFE-CVGL---------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       263 ~~i~~~~~g~~dvvid-~~g~---------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.+++  .++||+||- +...         ..-.+.+.+.|+++ |.++.-+.
T Consensus       142 ~~l~~--~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~-Gv~v~q~~  191 (276)
T d1mjfa_         142 EFIKN--NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNP-GIYVTQAG  191 (276)
T ss_dssp             HHHHH--CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             HHHhc--cCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCC-ceEEEecC
Confidence            44443  348999954 3321         23367888999997 99887654

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=87.75  E-value=0.19  Score=43.57  Aligned_cols=32  Identities=28%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             EEEEEccchhHHHHHHHHH-----HcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGAR-----LCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~-----~~g~~~Vi~~~~~~  236 (388)
                      -|+|+|+|++|++++.++.     ..|. +|+++++.+
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~-~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDL-KVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCC-cEEEEcCCC
Confidence            4899999999998777663     5788 899998754

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.72  E-value=0.39  Score=41.20  Aligned_cols=45  Identities=22%  Similarity=0.399  Sum_probs=32.9

Q ss_pred             HHHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          193 AWRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       193 l~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      +.+...+.++++||-+|.| .|.+++.+|++ |+++|++++.++.-.
T Consensus        27 i~~~~~~~~~~~VLDiGcG-~G~lsl~aa~~-Ga~~V~aid~s~~~~   71 (311)
T d2fyta1          27 IYQNPHIFKDKVVLDVGCG-TGILSMFAAKA-GAKKVLGVDQSEILY   71 (311)
T ss_dssp             HHHCGGGTTTCEEEEETCT-TSHHHHHHHHT-TCSEEEEEESSTHHH
T ss_pred             HHhccccCCcCEEEEECCC-CCHHHHHHHHc-CCCEEEEEeCHHHHH
Confidence            3344466789999999886 46666666664 777999999887543

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=87.72  E-value=0.14  Score=43.20  Aligned_cols=61  Identities=23%  Similarity=0.444  Sum_probs=36.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|||+|+ |.+|...+..+...|.  ++++++....      +-    .|-.+  ...+.+.+.+.   ++|+||++.+
T Consensus         2 KILItG~tGfiG~~l~~~L~~~g~--~v~~~~~~~~------~~----~Dl~~--~~~~~~~i~~~---~~D~Vih~Aa   63 (298)
T d1n2sa_           2 NILLFGKTGQVGWELQRSLAPVGN--LIALDVHSKE------FC----GDFSN--PKGVAETVRKL---RPDVIVNAAA   63 (298)
T ss_dssp             EEEEECTTSHHHHHHHHHTTTTSE--EEEECTTCSS------SC----CCTTC--HHHHHHHHHHH---CCSEEEECCC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCC--EEEEECCCcc------cc----CcCCC--HHHHHHHHHHc---CCCEEEEecc
Confidence            5999997 9999998887776664  5555443321      11    12122  12233333333   8999999886

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.68  E-value=0.23  Score=40.07  Aligned_cols=31  Identities=29%  Similarity=0.254  Sum_probs=28.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .|+|+|+|+.|+.++..+..+|. +|.+++..
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~-~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGI-PTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTC-CEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence            48889999999999999999999 99999764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.63  E-value=0.25  Score=39.66  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=27.4

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      |+|+|+|+.|+.++..|...|. +|.++++..
T Consensus         6 viVIG~GpaGl~aA~~aar~G~-kV~vIEk~~   36 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQ-KVTIVEKGN   36 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecCC
Confidence            7888999999999999999999 899997643

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.56  E-value=0.22  Score=38.82  Aligned_cols=32  Identities=41%  Similarity=0.465  Sum_probs=26.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCc-EEEEE
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGAT-RIIGV  232 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~-~Vi~~  232 (388)
                      .+++|+|+|+|.+|+-++..++.+|.+ .|+..
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~   34 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLV   34 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEe
Confidence            578999999999999999999998873 34443

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.56  E-value=0.25  Score=40.03  Aligned_cols=32  Identities=31%  Similarity=0.292  Sum_probs=27.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      -|+|+|+|+.|+.++..|...|. +|++++..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~-kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGF-NTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-cEEEEEecC
Confidence            47899999999999888888999 899998654

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.51  E-value=1.2  Score=36.21  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=27.7

Q ss_pred             CCCCEEEEEccchhHHHHHHHH-HHcCCcEEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVD  233 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la-~~~g~~~Vi~~~  233 (388)
                      -.+.+|+|-|.|.+|..+++.+ +..|+ +|+++.
T Consensus        29 l~g~~vaIqG~GnVG~~~a~~L~~e~Ga-~vv~vs   62 (234)
T d1b26a1          29 PKKATVAVQGFGNVGQFAALLISQELGS-KVVAVS   62 (234)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHHHHCC-EEEEEE
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhcCC-ceEEee
Confidence            4688999999999999999877 56799 787765

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=87.51  E-value=0.2  Score=38.93  Aligned_cols=81  Identities=20%  Similarity=0.213  Sum_probs=51.6

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEEEE-cCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccC
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGV-DVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVG  281 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~-~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g  281 (388)
                      +|.|+|.|.+|...+...+.. ++ +++++ ++++++.      ....+....+     .    ... ...+|+|+.|++
T Consensus         5 rvgiiG~G~ig~~~~~~l~~~~~~-elvav~~~~~~~~------~~~~~~~~~~-----~----~~~-~~~~D~Vvi~tp   67 (170)
T d1f06a1           5 RVAIVGYGNLGRSVEKLIAKQPDM-DLVGIFSRRATLD------TKTPVFDVAD-----V----DKH-ADDVDVLFLCMG   67 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSE-EEEEEEESSSCCS------SSSCEEEGGG-----G----GGT-TTTCSEEEECSC
T ss_pred             eEEEECChHHHHHHHHHHHhCCCc-EEEEEEecccccc------cccccccchh-----h----hhh-ccccceEEEeCC
Confidence            689999999998887777654 56 55544 4443321      1111222211     1    111 127999999999


Q ss_pred             CHHHHHHHHHHhhcCCceEEE
Q 016507          282 LASLVQEAYACCRKGWGKTIV  302 (388)
Q Consensus       282 ~~~~~~~~~~~l~~~~G~~v~  302 (388)
                      .....+.+.++|..| -.++.
T Consensus        68 ~~~h~~~a~~aL~aG-~~vv~   87 (170)
T d1f06a1          68 SATDIPEQAPKFAQF-ACTVD   87 (170)
T ss_dssp             TTTHHHHHHHHHTTT-SEEEC
T ss_pred             CcccHHHHHHHHHCC-CcEEE
Confidence            887789999999986 66653

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=87.41  E-value=3.4  Score=34.92  Aligned_cols=100  Identities=18%  Similarity=0.178  Sum_probs=64.2

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC--CchHHHHHHHcCCcEEEcCC------------------
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSK------------------  254 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~--~~~~~~~~~~lga~~v~~~~------------------  254 (388)
                      +...+.++.+|+...+|.-|.+++..++..|++-++++..  ++.+.+.++.+|+..+....                  
T Consensus        54 ~~g~~~~~~~vv~~SsGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~  133 (310)
T d1y7la1          54 KDGTLTKGKEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASD  133 (310)
T ss_dssp             HTTSSCTTCEEEESCCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHC
T ss_pred             HcCCCCCCceeeeecCCCchHHHHHHHHHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhh
Confidence            4445677777666677999999999999999854444433  33577778888887554210                  


Q ss_pred             --------CCCCc--------cHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhh
Q 016507          255 --------NCGDK--------SVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR  294 (388)
Q Consensus       255 --------~~~~~--------~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~  294 (388)
                              ..+..        ....++.+..++.+|.|+-++|+...+.-..+.++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk  189 (310)
T d1y7la1         134 PSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSITGISRAIK  189 (310)
T ss_dssp             TTTEECCCTTTCTHHHHHHHHTHHHHHHHHTTTCEEEEEEECSSSHHHHHHHHHHH
T ss_pred             cCccccCCCCcchhhHHHhhhhHHHHHHHhcCCCCCEEEecCcCCcchhHHHHHHH
Confidence                    00001        12234444445579999999988765666656554

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=87.15  E-value=0.27  Score=40.98  Aligned_cols=32  Identities=22%  Similarity=0.113  Sum_probs=27.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .|+|+|+|.+|++++..+...|. +|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~-~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENK-NTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            48999999999998888877898 999998754

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.12  E-value=0.26  Score=38.93  Aligned_cols=32  Identities=16%  Similarity=0.077  Sum_probs=27.4

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .+|+|+|+|+.|+.++..+...|. ++++++..
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~-~v~vie~~   37 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAEL-KPLLFEGW   37 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTC-CCEEECCS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCC-cEEEEEee
Confidence            579999999999999988888899 78888643

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=87.12  E-value=1.2  Score=34.46  Aligned_cols=92  Identities=21%  Similarity=0.319  Sum_probs=54.4

Q ss_pred             EEEEEccchhHHHHHHHHHHc-CCcEEEEEcCCc--hHHHHHHHc----C---Cc-------------E--EEcCCCCCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLC-GATRIIGVDVIS--EKFEIGKRF----G---VT-------------E--FVNSKNCGD  258 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~-g~~~Vi~~~~~~--~~~~~~~~l----g---a~-------------~--v~~~~~~~~  258 (388)
                      +|.|.|.|-+|.++...+-.. .. +|+++-...  +...++-++    |   .+             .  +...++   
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~-~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~---   78 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDI-EVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERD---   78 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTE-EEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSS---
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCc-EEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCC---
Confidence            688999999999988777533 45 677763222  233333322    1   00             0  111111   


Q ss_pred             ccHHHHHHhhcCC--CccEEEEccCCHHHHHHHHHHhhcCCceEEEEccC
Q 016507          259 KSVSQIIIDMTDG--GADYCFECVGLASLVQEAYACCRKGWGKTIVLGVD  306 (388)
Q Consensus       259 ~~~~~~i~~~~~g--~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~  306 (388)
                            ..+...+  ++|+|+||+|.-...+.+...+..+ .+-|.+...
T Consensus        79 ------p~~i~W~~~~vDiViEcTG~f~t~~~~~~hl~~g-akkViiSap  121 (171)
T d3cmco1          79 ------PENLAWGEIGVDIVVESTGRFTKREDAAKHLEAG-AKKVIISAP  121 (171)
T ss_dssp             ------GGGCCTGGGTCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESSC
T ss_pred             ------HHHccccccCCcEEEEecCccCCHHHHHHHHhCC-CceEEEecc
Confidence                  1111222  8999999999766577778888876 666666543

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.12  E-value=0.24  Score=42.38  Aligned_cols=32  Identities=16%  Similarity=0.313  Sum_probs=28.3

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .|||+|||..|+.++..+...|. +|.+++..+
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~-~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNK-KVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTC-CEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCC-cEEEEECCC
Confidence            48999999999999999888898 999998755

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.06  E-value=0.55  Score=35.46  Aligned_cols=39  Identities=28%  Similarity=0.368  Sum_probs=32.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchH
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEK  238 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~  238 (388)
                      ..+.+|.|+|+|.+|...+..+...+ +.+++.+|..+++
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            35679999999999999888887766 4589999988876

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.05  E-value=0.52  Score=40.74  Aligned_cols=30  Identities=23%  Similarity=0.213  Sum_probs=26.8

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVD  233 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~  233 (388)
                      ++|||+|+ |-+|...+..+...|. +|++++
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~-~V~~ld   33 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGY-LPVVID   33 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTC-CEEEEE
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcC-EEEEEE
Confidence            58999997 9999999998888898 898885

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.65  E-value=0.27  Score=42.30  Aligned_cols=31  Identities=26%  Similarity=0.357  Sum_probs=27.6

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      |+|+|+|..|+.++..++..|. +|++++.++
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~-~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGL-NVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTC-CEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCC-CEEEEecCC
Confidence            7899999999999999999999 899997644

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.47  E-value=0.35  Score=39.20  Aligned_cols=33  Identities=15%  Similarity=0.118  Sum_probs=26.9

Q ss_pred             EEEEEccchhHHHHHHHHHH--cCCcEEEEEcCCch
Q 016507          204 TVVIFGLGSIGLAVAEGARL--CGATRIIGVDVISE  237 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~--~g~~~Vi~~~~~~~  237 (388)
                      +|+|+|+|+.|+.++..+..  .|+ +|++++..+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~-~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRA-HVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSC-EEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCC-eEEEEeCCCC
Confidence            79999999999999886543  477 8999987653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=86.32  E-value=0.3  Score=39.24  Aligned_cols=30  Identities=20%  Similarity=0.302  Sum_probs=26.9

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      |+|+|+|+.|+.|+..|...|. +|.+++..
T Consensus         6 viIIGgGpAGl~aA~~aar~G~-~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGL-KTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTC-CEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            7888999999999999999999 89998754

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.20  E-value=0.35  Score=38.71  Aligned_cols=69  Identities=16%  Similarity=0.265  Sum_probs=42.4

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCC-cEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGA-TRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~-~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .+|||+|+ |.+|...+..+...|. .+|++..+++...       ...+ ....   .++.+ +.+...+..|.|++|+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-------~~~~-~~~~---~d~~~-~~~~~~~~~d~vi~~~   70 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-------HPRL-DNPV---GPLAE-LLPQLDGSIDTAFCCL   70 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-------CTTE-ECCB---SCHHH-HGGGCCSCCSEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-------cccc-cccc---cchhh-hhhccccchheeeeee
Confidence            68999998 9999999998877775 2566665543210       0011 1111   23333 3333334789999998


Q ss_pred             CCH
Q 016507          281 GLA  283 (388)
Q Consensus       281 g~~  283 (388)
                      |..
T Consensus        71 g~~   73 (212)
T d2a35a1          71 GTT   73 (212)
T ss_dssp             CCC
T ss_pred             eee
Confidence            753

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=0.34  Score=38.88  Aligned_cols=30  Identities=40%  Similarity=0.382  Sum_probs=27.1

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      |+|+|+|+.|+.++..+...|. +|.+++..
T Consensus         6 viIIG~GpaG~~aA~~aar~G~-kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGA-RAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-EEEEEecc
Confidence            7888999999999999999999 89998754

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.11  E-value=0.48  Score=37.47  Aligned_cols=39  Identities=18%  Similarity=0.271  Sum_probs=32.8

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR  244 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~  244 (388)
                      +|.|+|.|-+|+..+.++ +.|. +|+++|.++++.+.+++
T Consensus         2 kI~ViGlG~vGl~~a~~~-a~g~-~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL-SLQN-EVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTS-EEEEECSCHHHHHHHHT
T ss_pred             EEEEECCChhHHHHHHHH-HCCC-cEEEEECCHHHHHHHhh
Confidence            588899999999877666 4698 99999999998887764

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=86.09  E-value=1  Score=37.80  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=64.2

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHc--CCcEEEEEcCCchHHHHHHHc----CCcEEEcCCCCCCccHHHHHHhhcC
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLC--GATRIIGVDVISEKFEIGKRF----GVTEFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~--g~~~Vi~~~~~~~~~~~~~~l----ga~~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      .++.++.+||=+|.|. |..+..+++..  +. +|++++.++...+.+++.    +.+.-+...+  ...+     . ..
T Consensus        23 ~~~~~~~~ILDiGcG~-G~~~~~la~~~~~~~-~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d--~~~~-----~-~~   92 (281)
T d2gh1a1          23 WKITKPVHIVDYGCGY-GYLGLVLMPLLPEGS-KYTGIDSGETLLAEARELFRLLPYDSEFLEGD--ATEI-----E-LN   92 (281)
T ss_dssp             SCCCSCCEEEEETCTT-THHHHHHTTTSCTTC-EEEEEECCHHHHHHHHHHHHSSSSEEEEEESC--TTTC-----C-CS
T ss_pred             hccCCcCEEEEecCcC-CHHHHHHHHhCCCCC-EEEEEecchhHhhhhhcccccccccccccccc--cccc-----c-cc
Confidence            3567788999888864 78888888865  35 899999999888777653    3332121111  0111     1 12


Q ss_pred             CCccEEEEccC-----CH-HHHHHHHHHhhcCCceEEEEc
Q 016507          271 GGADYCFECVG-----LA-SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       271 g~~dvvid~~g-----~~-~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +.||+|+....     .+ ..+..+.+.|+++ |.++.+-
T Consensus        93 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~Lkpg-G~lii~~  131 (281)
T d2gh1a1          93 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKG-GKIICFE  131 (281)
T ss_dssp             SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEE-EEEEEEE
T ss_pred             CCceEEEEehhhhcCCCHHHHHHHHHHHcCcC-cEEEEEE
Confidence            37999986432     22 3478899999998 9888654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.81  E-value=0.43  Score=40.38  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=30.6

Q ss_pred             CCCEEEEEcc-c--hhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          201 VGSTVVIFGL-G--SIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       201 ~~~~VlI~Ga-g--~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      +|.++||+|+ |  ++|.+.++.+...|+ +|+...+++.
T Consensus         7 ~gK~alVTGass~~GIG~aiA~~la~~Ga-~Vvi~~~~~~   45 (297)
T d1d7oa_           7 RGKRAFIAGIADDNGYGWAVAKSLAAAGA-EILVGTWVPA   45 (297)
T ss_dssp             TTCEEEEECCSSSSSHHHHHHHHHHHTTC-EEEEEEEHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCchh
Confidence            6789999997 4  799999999999999 8988877653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=85.81  E-value=0.33  Score=41.15  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=26.7

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      .|+|+|+|.+|++++.-+...|.++|.++++++
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            599999999999877766667875799998653

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=85.75  E-value=0.92  Score=37.89  Aligned_cols=72  Identities=18%  Similarity=0.217  Sum_probs=42.1

Q ss_pred             EEEEcc-chhHHHHHHHHHHcCCcEEEEEcC--CchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCC-CccEEEEcc
Q 016507          205 VVIFGL-GSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDG-GADYCFECV  280 (388)
Q Consensus       205 VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~--~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g-~~dvvid~~  280 (388)
                      |||+|+ |-+|..++..+...|+.+|++++.  ...+...+.+.......+.     .++...+.....- ..++++.+.
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~i~~~a   76 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDK-----EDFLIQIMAGEEFGDVEAIFHEG   76 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSCCSEEEEH-----HHHHHHHHTTCCCSSCCEEEECC
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccchhhhccc-----hHHHHHHhhhhcccchhhhhhhc
Confidence            799987 999999988888778757888863  2223333344333333322     2233333332222 678887765


Q ss_pred             C
Q 016507          281 G  281 (388)
Q Consensus       281 g  281 (388)
                      +
T Consensus        77 a   77 (307)
T d1eq2a_          77 A   77 (307)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=85.59  E-value=2.5  Score=30.46  Aligned_cols=92  Identities=14%  Similarity=0.020  Sum_probs=60.8

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEccCCH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECVGLA  283 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~g~~  283 (388)
                      .|+|.|.|.+|..+++.++  +. .|++++.++++.+.++..|...+.-  +   ..-.+.+++..-..++.++-++..+
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~-~i~vi~~d~~~~~~~~~~~~~~i~G--d---~~~~~~L~~a~i~~A~~vi~~~~~d   73 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GS-EVFVLAEDENVRKKVLRSGANFVHG--D---PTRVSDLEKANVRGARAVIVNLESD   73 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GG-GEEEEESCTTHHHHHHHTTCEEEES--C---TTSHHHHHHTTCTTCSEEEECCSSH
T ss_pred             EEEEECCCHHHHHHHHHHc--CC-CCEEEEcchHHHHHHHhcCcccccc--c---cCCHHHHHHhhhhcCcEEEEeccch
Confidence            4788899999998877664  44 6778888999888888888765432  2   2223455554333889999888876


Q ss_pred             HH---HHHHHHHhhcCCceEEEEc
Q 016507          284 SL---VQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       284 ~~---~~~~~~~l~~~~G~~v~~g  304 (388)
                      ..   +....+.+.+. .+++...
T Consensus        74 ~~n~~~~~~~r~~~~~-~~iia~~   96 (129)
T d2fy8a1          74 SETIHCILGIRKIDES-VRIIAEA   96 (129)
T ss_dssp             HHHHHHHHHHHHHCSS-SCEEEEC
T ss_pred             hhhHHHHHHHHHHCCC-ceEEEEE
Confidence            42   23444455554 5665554

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=85.25  E-value=0.38  Score=40.91  Aligned_cols=32  Identities=31%  Similarity=0.471  Sum_probs=28.0

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      -|||+|+|..|+.++.-|...|+ +|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~-~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGA-KVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEecCC
Confidence            48999999999999988888999 899998654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=85.20  E-value=1.8  Score=30.74  Aligned_cols=36  Identities=14%  Similarity=-0.031  Sum_probs=27.6

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCc--EEEEEcCCc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGAT--RIIGVDVIS  236 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~--~Vi~~~~~~  236 (388)
                      ..++++|+|+|.+|.-++..+..++.+  .|..+.+.+
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            357999999999999988777765532  688887654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=85.13  E-value=0.38  Score=39.06  Aligned_cols=96  Identities=10%  Similarity=0.011  Sum_probs=57.7

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc--EEEcCCCCCCccHHHHHHhhcCCC
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDGG  272 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~--~v~~~~~~~~~~~~~~i~~~~~g~  272 (388)
                      ......++.+||=+|.|. |..+..+++ .|. +|++++.+++..+.+++...+  .++..+-   .++      ...+.
T Consensus        14 ~~~~~~~~~~VLDiGcG~-G~~~~~l~~-~g~-~v~giD~s~~~i~~a~~~~~~~~~~~~~~~---~~~------~~~~~   81 (225)
T d2p7ia1          14 AFTPFFRPGNLLELGSFK-GDFTSRLQE-HFN-DITCVEASEEAISHAQGRLKDGITYIHSRF---EDA------QLPRR   81 (225)
T ss_dssp             HHGGGCCSSCEEEESCTT-SHHHHHHTT-TCS-CEEEEESCHHHHHHHHHHSCSCEEEEESCG---GGC------CCSSC
T ss_pred             HhhhhCCCCcEEEEeCCC-cHHHHHHHH-cCC-eEEEEeCcHHHhhhhhcccccccccccccc---ccc------ccccc
Confidence            334455677899998755 666666654 477 899999999999988864322  1222111   111      11238


Q ss_pred             ccEEEEccC-----CH-HHHHHHH-HHhhcCCceEEEE
Q 016507          273 ADYCFECVG-----LA-SLVQEAY-ACCRKGWGKTIVL  303 (388)
Q Consensus       273 ~dvvid~~g-----~~-~~~~~~~-~~l~~~~G~~v~~  303 (388)
                      ||+|+-.-.     .+ ..+..+. ++|+++ |.++..
T Consensus        82 fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~g-G~l~i~  118 (225)
T d2p7ia1          82 YDNIVLTHVLEHIDDPVALLKRINDDWLAEG-GRLFLV  118 (225)
T ss_dssp             EEEEEEESCGGGCSSHHHHHHHHHHTTEEEE-EEEEEE
T ss_pred             cccccccceeEecCCHHHHHHHHHHHhcCCC-ceEEEE
Confidence            999975322     22 2244555 567886 777654

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=85.09  E-value=3.4  Score=36.13  Aligned_cols=54  Identities=26%  Similarity=0.174  Sum_probs=39.5

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC---CchHHHHHHHcCCcEEEc
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV---ISEKFEIGKRFGVTEFVN  252 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~---~~~~~~~~~~lga~~v~~  252 (388)
                      +++++.+|+-..+|..|++.+.+++.+|+ +++++..   +++|.+.++.+|++-+..
T Consensus       140 ~~~~g~~VVeaSSGN~GiAlA~~aa~lGi-k~~Iv~P~~~~~~K~~~ira~GAeVi~~  196 (382)
T d1wkva1         140 RVEKGSLVADATSSNFGVALSAVARLYGY-RARVYLPGAAEEFGKLLPRLLGAQVIVD  196 (382)
T ss_dssp             TSCTTCEEEEECCHHHHHHHHHHHHHTTC-EEEEEEETTSCHHHHHHHHHTTCEEEEE
T ss_pred             ccCCCCEEEEeCCcHHHHHHHHHHHHcCC-CEEEEeeccccccccccccccCcceeec
Confidence            46677765444569999999999999999 4444432   446788888999976543

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=85.02  E-value=5.3  Score=33.82  Aligned_cols=109  Identities=18%  Similarity=0.146  Sum_probs=65.9

Q ss_pred             HHhcCCCCCCEEEEE-ccchhHHHHHHHHHHcCCcEEEEEc---CCchHHHHHHHcCCcEEEcCC---------------
Q 016507          194 WRTANVEVGSTVVIF-GLGSIGLAVAEGARLCGATRIIGVD---VISEKFEIGKRFGVTEFVNSK---------------  254 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~-Gag~vG~~ai~la~~~g~~~Vi~~~---~~~~~~~~~~~lga~~v~~~~---------------  254 (388)
                      .+...++++...+|. .+|..|++.+..++.+|++ ++++.   .++.+.+.++.+|++-++...               
T Consensus        56 ~~~g~~~~~~~~vv~aSsGN~g~a~A~~a~~~g~~-~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~  134 (320)
T d1z7wa1          56 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYK-LIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEIL  134 (320)
T ss_dssp             HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCE-EEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHH
T ss_pred             HHcCCCCCCCceEEeeCCchHHHHHHHHHHhhccc-eEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHH
Confidence            344455666555555 5699999999999999984 44332   244678888889986443210               


Q ss_pred             ----------CCCC--------ccHHHHHHhhcCCCccEEEEccCCHHHHH---HHHHHhhcCCceEEEEc
Q 016507          255 ----------NCGD--------KSVSQIIIDMTDGGADYCFECVGLASLVQ---EAYACCRKGWGKTIVLG  304 (388)
Q Consensus       255 ----------~~~~--------~~~~~~i~~~~~g~~dvvid~~g~~~~~~---~~~~~l~~~~G~~v~~g  304 (388)
                                ..+.        .....++.+...+.+|.++-++|+...+.   ..++...+. -+++.+.
T Consensus       135 ~~~~~~~~~~~~~~~~n~~~g~~t~~~EI~~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~-~~~igve  204 (320)
T d1z7wa1         135 AKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNAN-VKLYGVE  204 (320)
T ss_dssp             HHCTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             HhCCCceecccccccchHHHhhhhHHHHHHHhccCCCCEEEeCCCCCcccchhhhhhhhhhcc-eeeeccc
Confidence                      0000        11233444444457899999988765443   445555554 6665543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=84.93  E-value=0.64  Score=36.62  Aligned_cols=86  Identities=16%  Similarity=0.104  Sum_probs=56.3

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      .+.+|.|+|.|.+|...+++++.+|+ +|++.++......       ......     ..+.+.++     ..|+|.-+.
T Consensus        43 ~~~~vgiiG~G~IG~~va~~l~~fg~-~v~~~d~~~~~~~-------~~~~~~-----~~l~ell~-----~sDii~i~~  104 (188)
T d1sc6a1          43 RGKKLGIIGYGHIGTQLGILAESLGM-YVYFYDIENKLPL-------GNATQV-----QHLSDLLN-----MSDVVSLHV  104 (188)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCCCC-------TTCEEC-----SCHHHHHH-----HCSEEEECC
T ss_pred             cceEEEEeecccchhhhhhhcccccc-eEeeccccccchh-------hhhhhh-----hhHHHHHh-----hccceeecc
Confidence            57899999999999999999999999 9999986543211       001111     22443333     457877765


Q ss_pred             CCHH-----HHHHHHHHhhcCCceEEEEcc
Q 016507          281 GLAS-----LVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~-----~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +-..     .-.+.++.++++ ..+|.++.
T Consensus       105 plt~~T~~li~~~~l~~mk~~-a~lIN~aR  133 (188)
T d1sc6a1         105 PENPSTKNMMGAKEISLMKPG-SLLINASR  133 (188)
T ss_dssp             CSSTTTTTCBCHHHHHHSCTT-EEEEECSC
T ss_pred             cCCcchhhhccHHHHhhCCCC-CEEEEcCc
Confidence            5321     124677778776 77776654

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=84.77  E-value=0.58  Score=39.77  Aligned_cols=31  Identities=23%  Similarity=0.270  Sum_probs=26.2

Q ss_pred             CEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC
Q 016507          203 STVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       203 ~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      .+|||+|+ |-+|...+..+...|. .+++++.
T Consensus         3 kkIlITG~tGfiG~~l~~~L~~~g~-~vi~~~~   34 (315)
T d1e6ua_           3 QRVFIAGHRGMVGSAIRRQLEQRGD-VELVLRT   34 (315)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCTT-EEEECCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCcC-EEEEecC
Confidence            48999997 9999999999988888 6776654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.72  E-value=0.48  Score=40.93  Aligned_cols=34  Identities=21%  Similarity=0.253  Sum_probs=26.4

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCC-cEEEEEcCCc
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGA-TRIIGVDVIS  236 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~-~~Vi~~~~~~  236 (388)
                      .+|+|+|||+.|++++..+...|. .+|++.++++
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            589999999999988866554442 2899998765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.63  E-value=0.37  Score=39.17  Aligned_cols=31  Identities=32%  Similarity=0.491  Sum_probs=27.4

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      -|+|+|+|+.|+.|+..|...|. +|.+++..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~-kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDK-KVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCC-CEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCC-eEEEEecc
Confidence            47899999999999999999999 89999743

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.50  E-value=0.44  Score=39.79  Aligned_cols=30  Identities=30%  Similarity=0.503  Sum_probs=26.7

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      |+|+|+|.+|+.++.-+...|. +|+++++.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~-~V~viE~~   35 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGV-KTLLVDAF   35 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-cEEEEeCC
Confidence            8999999999998888888899 89999864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=84.38  E-value=0.71  Score=38.23  Aligned_cols=101  Identities=13%  Similarity=-0.081  Sum_probs=63.9

Q ss_pred             HhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcC-CcEEEcCCCCCCccHHHHHHhhc--CC
Q 016507          195 RTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFG-VTEFVNSKNCGDKSVSQIIIDMT--DG  271 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lg-a~~v~~~~~~~~~~~~~~i~~~~--~g  271 (388)
                      +.....++.+||=+|+|. |..+..++..... +|.+++.+++-.+.+++.- ....++...   .++    .++.  .+
T Consensus        87 ~~l~~~~~~~vLD~GcG~-G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~---~d~----~~~~~~~~  157 (254)
T d1xtpa_          87 ASLPGHGTSRALDCGAGI-GRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFIL---ASM----ETATLPPN  157 (254)
T ss_dssp             HTSTTCCCSEEEEETCTT-THHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEE---SCG----GGCCCCSS
T ss_pred             hhCCCCCCCeEEEecccC-ChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEE---ccc----cccccCCC
Confidence            444556778898888765 7777787765554 8999999999888887632 111111111   111    1122  23


Q ss_pred             CccEEEEccCC-----H---HHHHHHHHHhhcCCceEEEEcc
Q 016507          272 GADYCFECVGL-----A---SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       272 ~~dvvid~~g~-----~---~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .||+|+.....     +   ..+..+.+.|+++ |.++..-.
T Consensus       158 ~fD~I~~~~vl~hl~d~d~~~~l~~~~~~Lkpg-G~iii~e~  198 (254)
T d1xtpa_         158 TYDLIVIQWTAIYLTDADFVKFFKHCQQALTPN-GYIFFKEN  198 (254)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             ccceEEeeccccccchhhhHHHHHHHHHhcCCC-cEEEEEec
Confidence            79999764432     1   2367888889997 98886543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.29  E-value=0.33  Score=39.39  Aligned_cols=33  Identities=12%  Similarity=0.160  Sum_probs=27.0

Q ss_pred             CEEEEEccchhHHHHHHHHHHcC-------CcEEEEEcCCc
Q 016507          203 STVVIFGLGSIGLAVAEGARLCG-------ATRIIGVDVIS  236 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g-------~~~Vi~~~~~~  236 (388)
                      -+|+|+|+|+.|++++..+...|       + +|.+.+..+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~-~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDM-AVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCE-EEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCC-ceEEEecCC
Confidence            37999999999999988776655       4 788887765

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=84.26  E-value=1.3  Score=34.23  Aligned_cols=74  Identities=15%  Similarity=0.255  Sum_probs=44.4

Q ss_pred             CCCEEEEEccchhHHHHH---HHHH--HcCCcEEEEEcCCchHHHHHH--------HcCCc-EEEcCCCCCCccHHHHHH
Q 016507          201 VGSTVVIFGLGSIGLAVA---EGAR--LCGATRIIGVDVISEKFEIGK--------RFGVT-EFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai---~la~--~~g~~~Vi~~~~~~~~~~~~~--------~lga~-~v~~~~~~~~~~~~~~i~  266 (388)
                      |+=+|.|+|+|++|....   .+++  .+...+++.+|.++++.+...        .++.. .+...     .+..+.+ 
T Consensus         1 p~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~-----td~~eaL-   74 (171)
T d1obba1           1 PSVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT-----MNLDDVI-   74 (171)
T ss_dssp             CCCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE-----SCHHHHH-
T ss_pred             CCcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe-----CChhhcc-
Confidence            345899999999985422   2333  222349999999988765321        23332 22222     2344444 


Q ss_pred             hhcCCCccEEEEccCCHH
Q 016507          267 DMTDGGADYCFECVGLAS  284 (388)
Q Consensus       267 ~~~~g~~dvvid~~g~~~  284 (388)
                          .+.|+|+.+++...
T Consensus        75 ----~dad~Vv~~~~~g~   88 (171)
T d1obba1          75 ----IDADFVINTAMVGG   88 (171)
T ss_dssp             ----TTCSEEEECCCTTH
T ss_pred             ----cCCCeEeeeccccc
Confidence                28999999987653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.24  E-value=6.6  Score=30.22  Aligned_cols=103  Identities=17%  Similarity=0.199  Sum_probs=63.7

Q ss_pred             HhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCc--EEEcCCCCCCccHHHHHHhhcCC
Q 016507          195 RTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVT--EFVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       195 ~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~--~v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      ....+++|.+ +|.+. |.=|+.. .+++. +. +|+++|++++..+.+++.-..  ..+...-   .++.+.+..+..+
T Consensus        12 ~~l~~~~g~~-~vD~T~G~GGhs~-~iL~~-~~-~viaiD~D~~ai~~a~~~~~~~~~~~~~~f---~~~~~~l~~~~~~   84 (182)
T d1wg8a2          12 DLLAVRPGGV-YVDATLGGAGHAR-GILER-GG-RVIGLDQDPEAVARAKGLHLPGLTVVQGNF---RHLKRHLAALGVE   84 (182)
T ss_dssp             HHHTCCTTCE-EEETTCTTSHHHH-HHHHT-TC-EEEEEESCHHHHHHHHHTCCTTEEEEESCG---GGHHHHHHHTTCS
T ss_pred             HhcCCCCCCE-EEEeCCCCcHHHH-HHhcc-cC-cEEEEhhhhhHHHHHhhccccceeEeehHH---HHHHHHHHHcCCC
Confidence            3446778885 56665 6555543 44443 55 999999999988887764322  2333332   4566666555444


Q ss_pred             CccEE-EEccCCHH--------------HHHHHHHHhhcCCceEEEEcc
Q 016507          272 GADYC-FECVGLAS--------------LVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       272 ~~dvv-id~~g~~~--------------~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .+|.| +|.--+..              .+....+.+.++ |+++.+..
T Consensus        85 ~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~g-g~~~ii~f  132 (182)
T d1wg8a2          85 RVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPG-GRLVVIAF  132 (182)
T ss_dssp             CEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEE-EEEEEEEC
T ss_pred             ccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCC-CeEEEEec
Confidence            78877 55422221              367778888887 88877754

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=83.90  E-value=0.69  Score=38.36  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=29.3

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~  233 (388)
                      -.|.+|+|-|.|.+|..+++++...|+ +|+++.
T Consensus        34 l~g~~v~IQGfGnVG~~~a~~L~e~Ga-kvvavs   66 (255)
T d1bgva1          34 LVGKTVALAGFGNVAWGAAKKLAELGA-KAVTLS   66 (255)
T ss_dssp             STTCEEEECCSSHHHHHHHHHHHHHTC-EEEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEe
Confidence            467899999999999999999999999 777764

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=83.61  E-value=0.94  Score=34.00  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=31.1

Q ss_pred             CCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHH
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  239 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~  239 (388)
                      ..+|.|+|+|.+|...+..+...| +.+++.+|.++++.
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            458999999999999888777766 45899999887653

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=83.54  E-value=3.8  Score=34.83  Aligned_cols=98  Identities=15%  Similarity=0.088  Sum_probs=60.7

Q ss_pred             cCCCCCCEEEEEcc--chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc---E-EEcCCCCCCccHHHHHH
Q 016507          197 ANVEVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---E-FVNSKNCGDKSVSQIII  266 (388)
Q Consensus       197 ~~~~~~~~VlI~Ga--g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~---~-v~~~~~~~~~~~~~~i~  266 (388)
                      ..+.+|++||=..+  |+.++.   ++ ..|+.+|+.++.++...++++.    .|.+   + ++.      .+..+.+.
T Consensus       140 ~~~~~g~~VLdlf~~~G~~sl~---aa-~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~------~d~~~~l~  209 (317)
T d2b78a2         140 NGSAAGKTVLNLFSYTAAFSVA---AA-MGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVV------MDVFDYFK  209 (317)
T ss_dssp             HTTTBTCEEEEETCTTTHHHHH---HH-HTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEE------SCHHHHHH
T ss_pred             HHhhCCCceeecCCCCcHHHHH---HH-hCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEE------ccHHHHHH
Confidence            45778999998854  554433   33 3677789999999988887764    2332   1 232      22334444


Q ss_pred             hhc-CC-CccEEEEccC----C-----------HHHHHHHHHHhhcCCceEEEEcc
Q 016507          267 DMT-DG-GADYCFECVG----L-----------ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       267 ~~~-~g-~~dvvid~~g----~-----------~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ... .+ .||+||-=-+    +           ...+..++++++++ |.++.+..
T Consensus       210 ~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pg-G~l~~~sc  264 (317)
T d2b78a2         210 YARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSEN-GLIIASTN  264 (317)
T ss_dssp             HHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEE-EEEEEEEC
T ss_pred             HHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCC-CEEEEEeC
Confidence            332 23 7999974111    0           12366788899997 88887655

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=83.52  E-value=0.95  Score=33.71  Aligned_cols=37  Identities=19%  Similarity=0.278  Sum_probs=30.2

Q ss_pred             EEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHHH
Q 016507          204 TVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKFE  240 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~~  240 (388)
                      +|.|+|+|.+|...+..+...+ +++++.+|.++++.+
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~   39 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQ   39 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccch
Confidence            5889999999999888777766 458999998887654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.52  E-value=0.53  Score=34.93  Aligned_cols=38  Identities=21%  Similarity=0.225  Sum_probs=27.3

Q ss_pred             CCCCCEEEEEccchhHHHHHHHH----HHcCCcEEEEEcCCch
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGA----RLCGATRIIGVDVISE  237 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la----~~~g~~~Vi~~~~~~~  237 (388)
                      ++.+.+++|+|+|.+|.-++..+    +..|. +|+.+...+.
T Consensus        34 ~~~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~-~Vt~i~~~~~   75 (137)
T d1m6ia2          34 SREVKSITIIGGGFLGSELACALGRKARALGT-EVIQLFPEKG   75 (137)
T ss_dssp             HHHCSEEEEECCSHHHHHHHHHHHHHHHHHTC-EEEEECSSSS
T ss_pred             hhcCCEEEEECCCHHHHHHHHHHHHHHHhcCC-EEEEeccccc
Confidence            34578999999999996544333    45788 8988876543

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=83.39  E-value=1.1  Score=34.28  Aligned_cols=40  Identities=25%  Similarity=0.395  Sum_probs=33.2

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHH
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  239 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~  239 (388)
                      .+..+|.|+|+|.+|...+..+...| +.+++.++.++++.
T Consensus        18 ~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a   58 (160)
T d1i0za1          18 VPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKL   58 (160)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHH
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchh
Confidence            34579999999999999999888887 56899999877553

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=83.39  E-value=1.4  Score=33.80  Aligned_cols=72  Identities=17%  Similarity=0.111  Sum_probs=42.7

Q ss_pred             CCEEEEEccchhHHH--HHHHHH-HcC--CcEEEEEcCCchHHHHHH--------HcCCc-EEEcCCCCCCccHHHHHHh
Q 016507          202 GSTVVIFGLGSIGLA--VAEGAR-LCG--ATRIIGVDVISEKFEIGK--------RFGVT-EFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~--ai~la~-~~g--~~~Vi~~~~~~~~~~~~~--------~lga~-~v~~~~~~~~~~~~~~i~~  267 (388)
                      .-+|.|+|+|++|..  ...+++ ...  ..+++.+|.++++.+...        ..+.+ .+.-.     .+..+.+. 
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal~-   76 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAFT-   76 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHHS-
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhccC-
Confidence            447899999877643  333333 222  248999999998865321        12333 22222     23344432 


Q ss_pred             hcCCCccEEEEccCCH
Q 016507          268 MTDGGADYCFECVGLA  283 (388)
Q Consensus       268 ~~~g~~dvvid~~g~~  283 (388)
                          +.|+|+.++|..
T Consensus        77 ----~AD~Vvitag~~   88 (167)
T d1u8xx1          77 ----DVDFVMAHIRVG   88 (167)
T ss_dssp             ----SCSEEEECCCTT
T ss_pred             ----CCCEEEECCCcC
Confidence                899999999864

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=83.30  E-value=0.47  Score=40.81  Aligned_cols=94  Identities=17%  Similarity=0.177  Sum_probs=55.0

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHH---HHHHcCCc---EEEcCCCCCCccHHHHHHhhcC
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFE---IGKRFGVT---EFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~---~~~~lga~---~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ..+.+|++||-+|+|. |.+++.+|+ .|+++|++++.++.-..   .++..+..   .++..+.   .++     ....
T Consensus        29 ~~~~~~~~VLDiGcG~-G~ls~~aa~-~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~---~~~-----~~~~   98 (316)
T d1oria_          29 RHLFKDKVVLDVGSGT-GILCMFAAK-AGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKV---EEV-----ELPV   98 (316)
T ss_dssp             HHHHTTCEEEEETCTT-SHHHHHHHH-TTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCT---TTC-----CCSS
T ss_pred             cccCCcCEEEEEecCC-cHHHHHHHH-hCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccH---HHc-----cccc
Confidence            3466899999999865 777776666 58779999998764322   22233332   2332222   111     1112


Q ss_pred             CCccEEEEccCC---------HHHHHHHHHHhhcCCceEE
Q 016507          271 GGADYCFECVGL---------ASLVQEAYACCRKGWGKTI  301 (388)
Q Consensus       271 g~~dvvid~~g~---------~~~~~~~~~~l~~~~G~~v  301 (388)
                      +.+|+|+.-...         ...+...-+.|+++ |.++
T Consensus        99 ~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~-G~ii  137 (316)
T d1oria_          99 EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPD-GLIF  137 (316)
T ss_dssp             SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEE-EEEE
T ss_pred             ceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCC-eEEE
Confidence            279999753221         12345566899997 8876

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=83.29  E-value=0.9  Score=32.44  Aligned_cols=34  Identities=15%  Similarity=0.018  Sum_probs=26.9

Q ss_pred             CCEEEEEccchhHHHHHHHHHHc---CCcEEEEEcCCc
Q 016507          202 GSTVVIFGLGSIGLAVAEGARLC---GATRIIGVDVIS  236 (388)
Q Consensus       202 ~~~VlI~Gag~vG~~ai~la~~~---g~~~Vi~~~~~~  236 (388)
                      .++++|+|+|.+|+-++.++..+   |. +|..+.+++
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~-~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGG-QVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTC-EEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhccccc-ccceecccc
Confidence            47899999999999888765543   66 888887654

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=83.22  E-value=1.5  Score=35.28  Aligned_cols=39  Identities=21%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             cCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          197 ANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       197 ~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      .+.-.+.+|++.|+|+.|...+++....+.++++.+|+.
T Consensus        21 g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~   59 (222)
T d1vl6a1          21 EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK   59 (222)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecce
Confidence            334467899999999999999999988898899999875

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.16  E-value=4.4  Score=31.59  Aligned_cols=105  Identities=19%  Similarity=0.196  Sum_probs=60.7

Q ss_pred             HHhcCCCCCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCcE-EEcCCCCCCccHHHHHHh
Q 016507          194 WRTANVEVGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVTE-FVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~~-v~~~~~~~~~~~~~~i~~  267 (388)
                      .....+.+++.+ |.++ |.=|.....+.+.-+. +|+++|++++.++.+++    ++... +++.+-   .++...+..
T Consensus        16 i~~l~~~~~~~~-lD~t~G~Gghs~~il~~~~~~-~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f---~~~~~~~~~   90 (192)
T d1m6ya2          16 IEFLKPEDEKII-LDCTVGEGGHSRAILEHCPGC-RIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSY---READFLLKT   90 (192)
T ss_dssp             HHHHCCCTTCEE-EETTCTTSHHHHHHHHHCTTC-EEEEEESCHHHHHHHHHHTGGGTTTEEEEECCG---GGHHHHHHH
T ss_pred             HHhhCCCCCCEE-EEecCCCcHHHHHHHhcCCCC-eEEEeechHHHHHHHHHhhccccccccchhHHH---hhHHHHHHH
Confidence            345567888855 5544 5544444333333455 99999999998888765    33222 333222   345555555


Q ss_pred             hcCCCccEE-EEccCCH--------------HHHHHHHHHhhcCCceEEEEc
Q 016507          268 MTDGGADYC-FECVGLA--------------SLVQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       268 ~~~g~~dvv-id~~g~~--------------~~~~~~~~~l~~~~G~~v~~g  304 (388)
                      +..+.+|.| +|.--+.              ..+..+.+.+.++ |+++.+.
T Consensus        91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~g-G~l~ii~  141 (192)
T d1m6ya2          91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPG-GRIVVIS  141 (192)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEE-EEEEEEE
T ss_pred             cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCC-Ceeeeec
Confidence            544478877 5532222              3356666777776 7777664

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.13  E-value=0.48  Score=40.58  Aligned_cols=32  Identities=34%  Similarity=0.527  Sum_probs=27.9

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      -|||+|+|..|+.++.-|...|+ +|++++..+
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~G~-~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKAGA-NVILVDKAP   52 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTC-CEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            48999999999999988888899 899997643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=83.04  E-value=0.51  Score=41.74  Aligned_cols=32  Identities=31%  Similarity=0.403  Sum_probs=25.2

Q ss_pred             EEEEEccchhHHHHHHHHHH------cCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARL------CGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~------~g~~~Vi~~~~~~  236 (388)
                      -|+|+|+|+.|++|+..+..      .|+ +|.++++..
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl-~VlllEK~~   71 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDL-RVCLVEKAA   71 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCC-CEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCC-EEEEEcCCC
Confidence            58999999999886654433      688 999998764

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.73  E-value=5.5  Score=30.20  Aligned_cols=90  Identities=11%  Similarity=0.041  Sum_probs=48.1

Q ss_pred             EEEEEccchhHHHHHHHHHHcC--Cc-EEEEEcCCchH------------HHHHHHcCCcEEEcCCCCCCccHHHHHHhh
Q 016507          204 TVVIFGLGSIGLAVAEGARLCG--AT-RIIGVDVISEK------------FEIGKRFGVTEFVNSKNCGDKSVSQIIIDM  268 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g--~~-~Vi~~~~~~~~------------~~~~~~lga~~v~~~~~~~~~~~~~~i~~~  268 (388)
                      +|.|.|-|.||...+++.....  .+ +|.++..+...            ..+...+... ..  .    ....+.+...
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~-~~--~----~~~~~~~~~~   78 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAERSLISKDFSPLNVGSDWKAALAAS-TT--K----TLPLDDLIAH   78 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSBEEECSSCSCCSCTTCHHHHHHTC-CC--B----CCCHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEEEEeeeeeecccccchHhhhhhhhhhhhc-cc--c----cccHHHHHHH
Confidence            5788899999999988776432  21 55555432211            0000111000 00  0    1111222222


Q ss_pred             cCC--CccEEEEccCCHHHHHHHHHHhhcCCceEE
Q 016507          269 TDG--GADYCFECVGLASLVQEAYACCRKGWGKTI  301 (388)
Q Consensus       269 ~~g--~~dvvid~~g~~~~~~~~~~~l~~~~G~~v  301 (388)
                      ...  ..++++||.++........+.|..+ =++|
T Consensus        79 ~~~~~~~~vivd~t~~~~~~~~~~~aL~~G-~hVV  112 (168)
T d1ebfa1          79 LKTSPKPVILVDNTSSAYIAGFYTKFVENG-ISIA  112 (168)
T ss_dssp             HTTCSSCEEEEECSCCHHHHTTHHHHHHTT-CEEE
T ss_pred             hccCCCceEEEEecCChHHHHHHHHHHHcC-CeEE
Confidence            222  6889999999998666667777774 4443

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.56  E-value=0.62  Score=34.97  Aligned_cols=90  Identities=16%  Similarity=0.005  Sum_probs=50.9

Q ss_pred             EEEEEcc-chhHHHHHHHHHHcC--CcEEEEEcCCchHHHHHHHcCCcEEEcCCCCCCccHHHHHHhhcCCCccEEEEcc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLCG--ATRIIGVDVISEKFEIGKRFGVTEFVNSKNCGDKSVSQIIIDMTDGGADYCFECV  280 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~g--~~~Vi~~~~~~~~~~~~~~lga~~v~~~~~~~~~~~~~~i~~~~~g~~dvvid~~  280 (388)
                      +|.|+|| |-+|+-.++++...+  .-++..+.++.+.-+.+...+-+..+       ...    ......+.|++|-|.
T Consensus         4 nVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~-------~~~----~~~~~~~~d~vf~a~   72 (144)
T d2hjsa1           4 NVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV-------GDV----DSFDFSSVGLAFFAA   72 (144)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEEC-------EEG----GGCCGGGCSEEEECS
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchh-------ccc----hhhhhccceEEEecC
Confidence            6899998 999999999886433  22666654443221111111111111       111    011111789999999


Q ss_pred             CCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          281 GLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       281 g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +........-.....+ ..++..+.
T Consensus        73 p~~~s~~~~~~~~~~g-~~VID~Ss   96 (144)
T d2hjsa1          73 AAEVSRAHAERARAAG-CSVIDLSG   96 (144)
T ss_dssp             CHHHHHHHHHHHHHTT-CEEEETTC
T ss_pred             CcchhhhhccccccCC-ceEEeech
Confidence            8877555566666665 66676654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=82.54  E-value=1.1  Score=33.45  Aligned_cols=37  Identities=27%  Similarity=0.462  Sum_probs=30.3

Q ss_pred             CEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHH
Q 016507          203 STVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  239 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~  239 (388)
                      .+|.|+|+|.+|..++..+...+ +.+++.++.++++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~   39 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERV   39 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence            47899999999999888887776 45899999887654

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.54  E-value=1.8  Score=34.52  Aligned_cols=97  Identities=12%  Similarity=0.038  Sum_probs=61.7

Q ss_pred             CCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHc----CCcE--EEcCCCCCCccHHHHHHhhcCC
Q 016507          198 NVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRF----GVTE--FVNSKNCGDKSVSQIIIDMTDG  271 (388)
Q Consensus       198 ~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~l----ga~~--v~~~~~~~~~~~~~~i~~~~~g  271 (388)
                      ...++.+||=+|.|. |..+..+++..+. +|++++.+++-.+.+++.    +...  .+..+-   .++     ....+
T Consensus        57 ~~~~~~~vLDiGcG~-G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~---~~~-----~~~~~  126 (222)
T d2ex4a1          57 NKTGTSCALDCGAGI-GRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGL---QDF-----TPEPD  126 (222)
T ss_dssp             -CCCCSEEEEETCTT-THHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCG---GGC-----CCCSS
T ss_pred             CCCCCCEEEEeccCC-CHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccc---ccc-----ccccc
Confidence            356678899998765 7777777665555 899999999988877753    2222  222111   111     11123


Q ss_pred             CccEEEEccC-----CH---HHHHHHHHHhhcCCceEEEEcc
Q 016507          272 GADYCFECVG-----LA---SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       272 ~~dvvid~~g-----~~---~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      .||+|+..-.     .+   ..+..+.+.|+++ |.++..-.
T Consensus       127 ~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~-G~~~i~~~  167 (222)
T d2ex4a1         127 SYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPN-GIIVIKDN  167 (222)
T ss_dssp             CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEE-EEEEEEEE
T ss_pred             cccccccccccccchhhhhhhHHHHHHHhcCCc-ceEEEEEc
Confidence            7999986332     22   3477888999997 98887644

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=82.47  E-value=1.3  Score=33.31  Aligned_cols=49  Identities=18%  Similarity=0.137  Sum_probs=38.8

Q ss_pred             hhhhHHHHHHhcCCCCCCEEEEE--ccchhHHHHHHHHHHcCCcEEEEEcCCch
Q 016507          186 VSTGVGAAWRTANVEVGSTVVIF--GLGSIGLAVAEGARLCGATRIIGVDVISE  237 (388)
Q Consensus       186 ~~ta~~~l~~~~~~~~~~~VlI~--Gag~vG~~ai~la~~~g~~~Vi~~~~~~~  237 (388)
                      ..|....+  ..+..++..|+|+  |+|-+|+-+++.+...|. +|..+.+.+.
T Consensus        25 v~t~~d~l--~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~-~Vtlv~~~~~   75 (156)
T d1djqa2          25 QLTPEQVM--DGKKKIGKRVVILNADTYFMAPSLAEKLATAGH-EVTIVSGVHL   75 (156)
T ss_dssp             EECHHHHH--HTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTC-EEEEEESSCT
T ss_pred             EECHHHHh--cCccccCCceEEEecCCChHHHHHHHHHHHcCC-eEEEEecCCc
Confidence            34555533  4567888999888  779999999999999999 9999987653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.41  E-value=0.6  Score=40.25  Aligned_cols=32  Identities=31%  Similarity=0.273  Sum_probs=28.1

Q ss_pred             EE-EEEcc-chhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TV-VIFGL-GSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~V-lI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      +| ||+|+ |-+|...+..+...|+ +|+++++..
T Consensus         2 KI~LVTG~tGfIG~~l~~~Ll~~g~-~V~~i~r~~   35 (347)
T d1t2aa_           2 NVALITGITGQDGSYLAEFLLEKGY-EVHGIVRRS   35 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCC
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCcC-EEEEEECCC
Confidence            57 99987 9999999998888899 999998754

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=82.34  E-value=1.1  Score=33.42  Aligned_cols=37  Identities=19%  Similarity=0.214  Sum_probs=29.7

Q ss_pred             CEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHH
Q 016507          203 STVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKF  239 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~  239 (388)
                      .+|.|+|+|.+|..++.++...+...++.++..+++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~   38 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVP   38 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccc
Confidence            4789999999999887777666765899999877653

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=82.31  E-value=0.77  Score=38.80  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=29.2

Q ss_pred             CCCEEEEEccchhHHHHHHHHHHcCCcEEEEEc
Q 016507          201 VGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD  233 (388)
Q Consensus       201 ~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~  233 (388)
                      .|.+|+|-|.|.+|..+++++...|+ +|+++.
T Consensus        35 ~gktvaIqGfGnVG~~~A~~L~e~Ga-kvv~vs   66 (293)
T d1hwxa1          35 GDKTFAVQGFGNVGLHSMRYLHRFGA-KCVAVG   66 (293)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEE
Confidence            57899999999999999999999999 888775

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=82.19  E-value=1.2  Score=33.46  Aligned_cols=37  Identities=35%  Similarity=0.486  Sum_probs=29.9

Q ss_pred             CEEEEEccchhHHHHHHHHHHcC-CcEEEEEcCCchHH
Q 016507          203 STVVIFGLGSIGLAVAEGARLCG-ATRIIGVDVISEKF  239 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~la~~~g-~~~Vi~~~~~~~~~  239 (388)
                      .+|.|+|+|.+|...+..+...| +.+++.++.++++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~   39 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV   39 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh
Confidence            57999999999988888777666 45899999887763

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.13  E-value=1.3  Score=36.78  Aligned_cols=105  Identities=10%  Similarity=-0.002  Sum_probs=56.7

Q ss_pred             CCCCCEEEEEccchhHHHHHHHHHH-----cCCc-EEEEEcCCchHHHHHHHc-C----C-cEEEcCCCCCCccHHHHHH
Q 016507          199 VEVGSTVVIFGLGSIGLAVAEGARL-----CGAT-RIIGVDVISEKFEIGKRF-G----V-TEFVNSKNCGDKSVSQIII  266 (388)
Q Consensus       199 ~~~~~~VlI~Gag~vG~~ai~la~~-----~g~~-~Vi~~~~~~~~~~~~~~l-g----a-~~v~~~~~~~~~~~~~~i~  266 (388)
                      .++.-+||=+|.|. |..+..+++.     .+.. .+++++.++..++.+++. .    . ...++....+.+.+.....
T Consensus        38 ~~~~~~VLDiGcG~-G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          38 TKSEIKILSIGGGA-GEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             TCSEEEEEEETCTT-SHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred             CCCCCeEEEEcCCC-CHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence            34444789888643 4343333332     2221 678999888877776642 1    1 1122322211111222222


Q ss_pred             hhcCC-CccEEEEccC-----C-HHHHHHHHHHhhcCCceEEEEcc
Q 016507          267 DMTDG-GADYCFECVG-----L-ASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       267 ~~~~g-~~dvvid~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ..... .||+|+-.-.     . ...+..+.+.|+++ |.++....
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~Lkpg-G~l~i~~~  161 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTN-AKMLIIVV  161 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEE-EEEEEEEE
T ss_pred             ccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCC-CEEEEEEe
Confidence            22223 8999976332     2 24588999999997 98876643

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=82.08  E-value=11  Score=31.15  Aligned_cols=101  Identities=19%  Similarity=0.202  Sum_probs=62.1

Q ss_pred             HHhcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEc--CCchHHHHHHHcCCcEEEcC------------------
Q 016507          194 WRTANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVD--VISEKFEIGKRFGVTEFVNS------------------  253 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~--~~~~~~~~~~~lga~~v~~~------------------  253 (388)
                      .+...+.++.+|+..++|.-|.+++..++.+|.+-++++.  .++.+.+.++.+|++-+.-.                  
T Consensus        53 ~~~g~~~~~~~vv~assGn~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~  132 (302)
T d1fcja_          53 EKRGVLKPGVELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVAS  132 (302)
T ss_dssp             HHHTCCCTTCEEEEECSSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCceEEEeccccchhHHHHHHHHhccCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHHHhh
Confidence            3445667777766667799999999999999985333332  24456777777887643210                  


Q ss_pred             --------CCCCC--------ccHHHHHHhhcCCCccEEEEccCCHHHHHHHHHHhh
Q 016507          254 --------KNCGD--------KSVSQIIIDMTDGGADYCFECVGLASLVQEAYACCR  294 (388)
Q Consensus       254 --------~~~~~--------~~~~~~i~~~~~g~~dvvid~~g~~~~~~~~~~~l~  294 (388)
                              ...+.        .....++.+..++.+|+++-++|+...+.-....++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~ti~~Ei~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk  189 (302)
T d1fcja_         133 DPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIK  189 (302)
T ss_dssp             STTTEEECCTTTCTHHHHHHHHTHHHHHHHHTTTCCCEEEEECSSSHHHHHHHHHHH
T ss_pred             hccceeccccccccchhHHHHhHHHHHHHHhcCCCCCEEEEcCCCccccccceeeee
Confidence                    11010        113344555555578999999988654554444444

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=82.04  E-value=0.55  Score=40.34  Aligned_cols=31  Identities=26%  Similarity=0.360  Sum_probs=27.5

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      |||+|+|..|+.|+.-|...|+ +|+++...+
T Consensus         8 VvVIG~G~AGl~AAl~aa~~G~-~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGGGLAGLRAAVATQQKGL-STIVLSLIP   38 (336)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTC-CEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCC-CEEEEecCC
Confidence            8999999999999999988999 899997654

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=81.98  E-value=0.56  Score=40.18  Aligned_cols=32  Identities=44%  Similarity=0.574  Sum_probs=27.9

Q ss_pred             EEEEEccchhHHHHHHHHHHcCCcEEEEEcCCc
Q 016507          204 TVVIFGLGSIGLAVAEGARLCGATRIIGVDVIS  236 (388)
Q Consensus       204 ~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~  236 (388)
                      -|+|+|+|..|+.++..|...|+ +|++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~G~-~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDAGA-KVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTTTC-CEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence            38999999999999888888899 899998654

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=81.94  E-value=0.17  Score=39.10  Aligned_cols=89  Identities=20%  Similarity=0.268  Sum_probs=50.7

Q ss_pred             EEEEEcc-chhHHHHHHHHHHc-CCcEEEEEcCCchHHHHHHHc----CCc----EEEcCCCCCCccHHHHHHhhcCCCc
Q 016507          204 TVVIFGL-GSIGLAVAEGARLC-GATRIIGVDVISEKFEIGKRF----GVT----EFVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~la~~~-g~~~Vi~~~~~~~~~~~~~~l----ga~----~v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +|.|+|+ |-+|.+.++++... ++ ++++.-..+.....-+.+    +..    .+.+..+            .....+
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~-~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~------------~~~~~~   72 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGV-QLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLD------------AVKDDF   72 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTE-ECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCST------------TTTTSC
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCC-EEEEEEecccchhccchhhhhhccccCCceeeccHH------------HHhccc
Confidence            6888897 99999999988764 56 444432222111110111    110    1111111            011278


Q ss_pred             cEEEEccCCHHHHHHHHHHhhcCCceEEEEccCC
Q 016507          274 DYCFECVGLASLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       274 dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      |+++|++.... ....++..... +.=+.+|.+.
T Consensus        73 DViIDFs~p~~-~~~~~~~a~~~-~~~~ViGTTG  104 (162)
T d1diha1          73 DVFIDFTRPEG-TLNHLAFCRQH-GKGMVIGTTG  104 (162)
T ss_dssp             SEEEECSCHHH-HHHHHHHHHHT-TCEEEECCCC
T ss_pred             ceEEEeccHHH-HHHHHHHHHhc-cceeEEecCC
Confidence            99999977665 56666666664 8888888754

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=81.92  E-value=4.5  Score=31.51  Aligned_cols=33  Identities=27%  Similarity=0.499  Sum_probs=25.5

Q ss_pred             CccEEEEccCCHHHHHHHHHHhhcCCceEEEEcc
Q 016507          272 GADYCFECVGLASLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       272 ~~dvvid~~g~~~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      ++|+|+||+|.-...+.+...+..+ .+-|.+..
T Consensus       103 gvDiViEcTG~f~~~~~a~~hl~~G-akkViiSA  135 (190)
T d1k3ta1         103 GVEYVIESTGLFTAKAAAEGHLRGG-ARKVVISA  135 (190)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTT-CSEEEESS
T ss_pred             CCcEEEEecccccccccchhhcccC-cceeeecc
Confidence            8999999999655567777888876 66666654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=81.51  E-value=0.58  Score=39.20  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=27.0

Q ss_pred             CEEEEEccchhHHHHHH-HHHHcCCcEEEEEcCCc
Q 016507          203 STVVIFGLGSIGLAVAE-GARLCGATRIIGVDVIS  236 (388)
Q Consensus       203 ~~VlI~Gag~vG~~ai~-la~~~g~~~Vi~~~~~~  236 (388)
                      --|+|+|+|+.|+.++. +|+..|. +|.+++..+
T Consensus        34 ~DViVIGaGpaGL~aA~~LA~~~G~-~V~vlE~~~   67 (278)
T d1rp0a1          34 TDVVVVGAGSAGLSAAYEISKNPNV-QVAIIEQSV   67 (278)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTS-CEEEEESSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHccCC-eEEEEecCC
Confidence            34999999999998765 5666799 999998765

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=81.40  E-value=7.9  Score=32.71  Aligned_cols=103  Identities=18%  Similarity=0.162  Sum_probs=61.8

Q ss_pred             CCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcC--CchHHHHHHHcCCcEEEcCCCC---------------------
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDV--ISEKFEIGKRFGVTEFVNSKNC---------------------  256 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~--~~~~~~~~~~lga~~v~~~~~~---------------------  256 (388)
                      .+..+|+...+|..|.+++..++..|..-++++..  ++++.+.++.+|++-++...+.                     
T Consensus        73 ~~~~~vv~assGN~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (331)
T d1tdja1          73 QKAHGVITASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPP  152 (331)
T ss_dssp             SCSSSCEEEECSSSHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECCS
T ss_pred             CCCCeeeecccchhHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhhhhcCCCccccc
Confidence            34455666567999999999999999843433322  3367788888998754321110                     


Q ss_pred             -CCcc-------HHHHHHhhcCCCccEEEEccCCHHH---HHHHHHHhhcCCceEEEEc
Q 016507          257 -GDKS-------VSQIIIDMTDGGADYCFECVGLASL---VQEAYACCRKGWGKTIVLG  304 (388)
Q Consensus       257 -~~~~-------~~~~i~~~~~g~~dvvid~~g~~~~---~~~~~~~l~~~~G~~v~~g  304 (388)
                       ....       ...++.+. .+.+|.||-++|+...   +...++.+.+. .+++.+.
T Consensus       153 ~~~~~~~~g~~t~~~Ei~~q-~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~-~~ii~ve  209 (331)
T d1tdja1         153 FDHPMVIAGQGTLALELLQQ-DAHLDRVFVPVGGGGLAAGVAVLIKQLMPQ-IKVIAVE  209 (331)
T ss_dssp             SCCHHHHHHHHHHHHHHHHH-CTTCCEEEEECSSSHHHHHHHHHHHHHCTT-CEEEEEE
T ss_pred             cCChHHhhhhhhHHHHHHHh-cCCCCEEEEeCChhHHHHHHHHHHHHhCCC-cEEEEec
Confidence             0000       12222222 1368999999987543   34555566665 6777664

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.88  E-value=1.9  Score=32.31  Aligned_cols=68  Identities=15%  Similarity=0.114  Sum_probs=42.0

Q ss_pred             CCCCEEEEEcc--chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHH----cCCc---EEEcCCCCCCccHHHHHHhhcC
Q 016507          200 EVGSTVVIFGL--GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKR----FGVT---EFVNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       200 ~~~~~VlI~Ga--g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~----lga~---~v~~~~~~~~~~~~~~i~~~~~  270 (388)
                      -.|.+||=.|+  |.+|+.|   + ..|+.+|+.++.+++-.+.+++    ++..   .++.      .+..+.+. ...
T Consensus        13 ~~g~~vlDl~~GtG~~~iea---~-~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~------~D~~~~l~-~~~   81 (152)
T d2esra1          13 FNGGRVLDLFAGSGGLAIEA---V-SRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK------MEAERAID-CLT   81 (152)
T ss_dssp             CCSCEEEEETCTTCHHHHHH---H-HTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEEC------SCHHHHHH-HBC
T ss_pred             CCCCeEEEcCCccCHHHHHH---H-HhCcceeeeehhchhhhhhhhhhhhhcccccchhhhc------cccccccc-ccc
Confidence            35778877754  5555533   3 4688899999999877666553    4542   2343      23333343 344


Q ss_pred             CCccEEEE
Q 016507          271 GGADYCFE  278 (388)
Q Consensus       271 g~~dvvid  278 (388)
                      +.||+||-
T Consensus        82 ~~fDiIf~   89 (152)
T d2esra1          82 GRFDLVFL   89 (152)
T ss_dssp             SCEEEEEE
T ss_pred             cccceeEe
Confidence            58999974

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.67  E-value=0.76  Score=37.98  Aligned_cols=30  Identities=30%  Similarity=0.374  Sum_probs=27.2

Q ss_pred             EEEEccchhHHHHHHHHHHcCCcEEEEEcCC
Q 016507          205 VVIFGLGSIGLAVAEGARLCGATRIIGVDVI  235 (388)
Q Consensus       205 VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~  235 (388)
                      |+|+|+|+.|+.++..|...|. +|..++..
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~-~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNA-KVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTC-CEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCC-eEEEEecC
Confidence            7888999999999999999999 99999864

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=80.59  E-value=6.3  Score=29.88  Aligned_cols=70  Identities=21%  Similarity=0.174  Sum_probs=40.2

Q ss_pred             EEEEEccchhH--HHHHHHHHHc---CCcEEEEEcCCchH--HHHHH--------HcCCc-EEEcCCCCCCccHHHHHHh
Q 016507          204 TVVIFGLGSIG--LAVAEGARLC---GATRIIGVDVISEK--FEIGK--------RFGVT-EFVNSKNCGDKSVSQIIID  267 (388)
Q Consensus       204 ~VlI~Gag~vG--~~ai~la~~~---g~~~Vi~~~~~~~~--~~~~~--------~lga~-~v~~~~~~~~~~~~~~i~~  267 (388)
                      +|.|+|||++|  .+...+++..   ....++.++.++++  .+.+.        .++.+ .+....     +..+.+. 
T Consensus         3 KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~t-----d~~~al~-   76 (169)
T d1s6ya1           3 KIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTL-----DRRRALD-   76 (169)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEES-----CHHHHHT-
T ss_pred             EEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecC-----CchhhcC-
Confidence            68899988665  4455555532   23489999987754  33222        12332 222222     2333332 


Q ss_pred             hcCCCccEEEEccCCH
Q 016507          268 MTDGGADYCFECVGLA  283 (388)
Q Consensus       268 ~~~g~~dvvid~~g~~  283 (388)
                          +.|+|+.+++..
T Consensus        77 ----gaDvVv~ta~~~   88 (169)
T d1s6ya1          77 ----GADFVTTQFRVG   88 (169)
T ss_dssp             ----TCSEEEECCCTT
T ss_pred             ----CCCEEEEccccC
Confidence                889999999865

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.56  E-value=1.3  Score=38.00  Aligned_cols=33  Identities=24%  Similarity=0.347  Sum_probs=29.0

Q ss_pred             CCCEEEEEcc-chhHHHHHHHHHHcCCcEEEEEcC
Q 016507          201 VGSTVVIFGL-GSIGLAVAEGARLCGATRIIGVDV  234 (388)
Q Consensus       201 ~~~~VlI~Ga-g~vG~~ai~la~~~g~~~Vi~~~~  234 (388)
                      ...+|||+|+ |-+|...+..+...|+ +|+++++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~-~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQ-KVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEEC
Confidence            3468999997 9999999999999999 9999875

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.23  E-value=5.3  Score=33.22  Aligned_cols=102  Identities=12%  Similarity=0.201  Sum_probs=58.8

Q ss_pred             hcCCCCCCEEEEEccchhHHHHHHHHHHcCCcEEEEEcCCchHHHHHH----HcCCcEE-EcCCCCCCccHHHHHHhhcC
Q 016507          196 TANVEVGSTVVIFGLGSIGLAVAEGARLCGATRIIGVDVISEKFEIGK----RFGVTEF-VNSKNCGDKSVSQIIIDMTD  270 (388)
Q Consensus       196 ~~~~~~~~~VlI~Gag~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~----~lga~~v-~~~~~~~~~~~~~~i~~~~~  270 (388)
                      ....++|++||=.-|++=|..+ +++..+.-.+|++.+.++.|...++    .+|+..+ +...+   ......   ...
T Consensus        97 ~L~~~~g~~vLD~CAaPGgKt~-~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~---~~~~~~---~~~  169 (284)
T d1sqga2          97 WLAPQNGEHILDLCAAPGGKTT-HILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDG---RYPSQW---CGE  169 (284)
T ss_dssp             HHCCCTTCEEEEESCTTCHHHH-HHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCT---TCTHHH---HTT
T ss_pred             ccCccccceeEeccCccccchh-hhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccc---cccchh---ccc
Confidence            4578899999988544433332 3333333238999999999876654    5777532 32222   222111   122


Q ss_pred             CCccEE-EE--ccCCH-------------------------HHHHHHHHHhhcCCceEEEEcc
Q 016507          271 GGADYC-FE--CVGLA-------------------------SLVQEAYACCRKGWGKTIVLGV  305 (388)
Q Consensus       271 g~~dvv-id--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~g~  305 (388)
                      +.||.| +|  |+|..                         ..+..+++.++++ |++|+...
T Consensus       170 ~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~g-G~lvYsTC  231 (284)
T d1sqga2         170 QQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTG-GTLVYATC  231 (284)
T ss_dssp             CCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEE-EEEEEEES
T ss_pred             ccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCC-ceEEEeee
Confidence            379988 45  66642                         2345666677776 77765554

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=80.20  E-value=7.9  Score=33.05  Aligned_cols=94  Identities=16%  Similarity=0.133  Sum_probs=62.1

Q ss_pred             CCCCEEEEEccchhHHHHHHHH-HHcCCcEEEEEcCCchHHH-HHHHc----CCcEEEcCCCCCCccHHHHHHhhcCCCc
Q 016507          200 EVGSTVVIFGLGSIGLAVAEGA-RLCGATRIIGVDVISEKFE-IGKRF----GVTEFVNSKNCGDKSVSQIIIDMTDGGA  273 (388)
Q Consensus       200 ~~~~~VlI~Gag~vG~~ai~la-~~~g~~~Vi~~~~~~~~~~-~~~~l----ga~~v~~~~~~~~~~~~~~i~~~~~g~~  273 (388)
                      +...++.|+|+|..+.+.++.. ..++.++|.+.++++++.+ +++.+    |..... .     .+..+.++     +.
T Consensus       126 ~da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~-~-----~s~~eav~-----~A  194 (340)
T d1x7da_         126 PNARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRR-A-----SSVAEAVK-----GV  194 (340)
T ss_dssp             TTCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEE-C-----SSHHHHHT-----TC
T ss_pred             cCCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCcee-c-----CCHHHHHh-----cC
Confidence            4457899999999998877755 5678889999999987654 44433    333222 1     23444443     78


Q ss_pred             cEEEEccCCH---HHHHHHHHHhhcCCceEEEEccCC
Q 016507          274 DYCFECVGLA---SLVQEAYACCRKGWGKTIVLGVDQ  307 (388)
Q Consensus       274 dvvid~~g~~---~~~~~~~~~l~~~~G~~v~~g~~~  307 (388)
                      |+|+-|+.+.   ..+.  ...++++ -++..+|...
T Consensus       195 DIi~t~Tas~s~~Pv~~--~~~l~pG-~hI~aiGs~~  228 (340)
T d1x7da_         195 DIITTVTADKAYATIIT--PDMLEPG-MHLNAVGGDC  228 (340)
T ss_dssp             SEEEECCCCSSEEEEEC--GGGCCTT-CEEEECSCCB
T ss_pred             CceeeccccCCCCcccc--hhhcCCC-CEEeecccch
Confidence            9999877543   1122  2468886 8888888754

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=80.14  E-value=2.4  Score=30.66  Aligned_cols=61  Identities=7%  Similarity=-0.023  Sum_probs=45.6

Q ss_pred             HHhcCCCCCCEEEEE-cc-chhHHHHHHHHHHcCCcEEEEEcCCchHHHHHHHcCCcEEEcCC
Q 016507          194 WRTANVEVGSTVVIF-GL-GSIGLAVAEGARLCGATRIIGVDVISEKFEIGKRFGVTEFVNSK  254 (388)
Q Consensus       194 ~~~~~~~~~~~VlI~-Ga-g~vG~~ai~la~~~g~~~Vi~~~~~~~~~~~~~~lga~~v~~~~  254 (388)
                      ++.+++..-+.|++. +. -..-+++...++..+..++++-..+++..+.++.+|+++++++.
T Consensus        57 l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad~vi~p~  119 (134)
T d2hmva1          57 LLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGADRIIHPE  119 (134)
T ss_dssp             HHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCSEEECHH
T ss_pred             hhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCCEEEChH
Confidence            456677777766665 44 34455566677788876899988889999999999999998754

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=80.10  E-value=3.3  Score=35.92  Aligned_cols=29  Identities=28%  Similarity=0.304  Sum_probs=23.8

Q ss_pred             EEEEEcc-chhHHHHHH-HHHHcCCcEEEEEc
Q 016507          204 TVVIFGL-GSIGLAVAE-GARLCGATRIIGVD  233 (388)
Q Consensus       204 ~VlI~Ga-g~vG~~ai~-la~~~g~~~Vi~~~  233 (388)
                      +|||+|+ |-+|...+. |++..|+ +|++++
T Consensus         4 KVLITG~tGfIGs~lv~~LL~~~~~-~V~~~D   34 (383)
T d1gy8a_           4 RVLVCGGAGYIGSHFVRALLRDTNH-SVVIVD   34 (383)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHCCC-EEEEEE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHhCCC-EEEEEe
Confidence            6999987 999977665 5567888 899986