Citrus Sinensis ID: 016513

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------39
MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIVK
cEEEEccccccccccccEEEEEccEEEEEEEEEEccccEEEEEEEEccEEcccccccccccccccccccHHcHHHHHHHcccccccEEEEEcccccccHHHHHHHHccccccccEEEccccHHHHHcHHHHHHHcccEEEEcccccccccccccHHHHHHHHHHHHHccccEEEEccHHHHHHcccccccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHccccccEEEEEcccccccccccccccHHHHHHHHcccccEEEEEcccccccccccHHHHHHHHHHHHHHccccccccEEEEEcccccccEEEEEEEc
cEEEEcccccEEEccccEEEEEccEEEEEEEEEcccccEEEEEEcccEEcccccEEEccccccccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHcHHHcccEEEEEEccHHHHHcHHHHHHHccEEEEcHHHHHHHccHHHHHHHHHHHHHHHHHHcccEEEcccccHHHHccccccHHHHHHHHHHHHHcccEEEEcHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHccccccEEEEEccHHHccccEEEcccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccEEEEEEEEc
mitmsykklpvdvkpgntilcadgtitltvlscdpksgtvrcrcentamlgerknvnlpgvvvdlptltekdkedilrwgvpnniDMIALSFVRKGSDLVNVRKVlgphakniQLMSKVenqegvvnfdDILRETDSFMvargdlgmeipVEKIFLAQKMMIYKCNLVGKPVVTATQMLESmiksprptraeATDVANAVLdgtdcvmlsgesaagaypEIAVKIMRRICIEAESSLDYRAVFKEMirstplpmspleslASSAVRTANKARAKLIVVLTRGGTTAKLVakyrpavpilSVVVPvlttdsfdwtcsdetparhsliyrglipilaegsakatdaeSTEVILEGALKSAIEkglcspgdAVVALHRIGVASVIKICIVK
mitmsykklpvdvkpgnTILCADGTITLtvlscdpksgtvRCRCENtamlgerknvnlpgvvvdlptltekdkedilrwgvpnnIDMIALSFVRKGSDLVNVRKVLGphakniqlmskvenqegvVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMiksprptraeATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVltrggttaklvakyrpavpilSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRIGVasvikicivk
MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIVK
********LPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLE**************DVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIR********************NKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIV*
MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIR*****MSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIVK
MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMI**********TDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEG*********TEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIVK
MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIVK
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MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIVK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query388 2.2.26 [Sep-21-2011]
Q42806511 Pyruvate kinase, cytosoli yes no 1.0 0.759 0.932 0.0
P22200510 Pyruvate kinase, cytosoli N/A no 1.0 0.760 0.914 0.0
Q42954508 Pyruvate kinase, cytosoli N/A no 1.0 0.763 0.780 1e-179
O65595497 Probable pyruvate kinase, no no 0.997 0.778 0.759 1e-173
O44006531 Pyruvate kinase OS=Eimeri N/A no 0.943 0.689 0.494 1e-101
Q54RF5507 Pyruvate kinase OS=Dictyo yes no 0.902 0.690 0.509 5e-98
Q12669526 Pyruvate kinase OS=Asperg yes no 0.914 0.674 0.463 9e-88
P00548530 Pyruvate kinase muscle is yes no 0.920 0.673 0.453 9e-88
Q92122527 Pyruvate kinase muscle is N/A no 0.920 0.677 0.469 8e-87
P11980531 Pyruvate kinase isozymes yes no 0.920 0.672 0.450 9e-87
>sp|Q42806|KPYC_SOYBN Pyruvate kinase, cytosolic isozyme OS=Glycine max PE=2 SV=1 Back     alignment and function desciption
 Score =  741 bits (1914), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/388 (93%), Positives = 375/388 (96%)

Query: 1   MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPG 60
           MI+MSYKKLPV +KPGNTILC+DGTITLTVLSCDP +GTVRCRCENTA LGERKNVNLPG
Sbjct: 124 MISMSYKKLPVHLKPGNTILCSDGTITLTVLSCDPDAGTVRCRCENTATLGERKNVNLPG 183

Query: 61  VVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE 120
           VVVDLPTLTEKDKEDIL WGVPN IDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE
Sbjct: 184 VVVDLPTLTEKDKEDILGWGVPNKIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE 243

Query: 121 NQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLE 180
           NQEGV+NFD+ILRETD+FMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLE
Sbjct: 244 NQEGVLNFDEILRETDAFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLE 303

Query: 181 SMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240
           SMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPE+AVKIM RICIEAESSLDY 
Sbjct: 304 SMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPELAVKIMARICIEAESSLDYG 363

Query: 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILS 300
           A+FKEMIRSTPLPMSPLESLASSAVRTANKA+AKLIVVLTRGG+TAKLVAKYRPAVPILS
Sbjct: 364 AIFKEMIRSTPLPMSPLESLASSAVRTANKAKAKLIVVLTRGGSTAKLVAKYRPAVPILS 423

Query: 301 VVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIE 360
           VVVPVL+TDSFDWTCSDETPARHSLIYRGLIPIL EGSAKATDAESTEVILE ALKSA E
Sbjct: 424 VVVPVLSTDSFDWTCSDETPARHSLIYRGLIPILGEGSAKATDAESTEVILEAALKSATE 483

Query: 361 KGLCSPGDAVVALHRIGVASVIKICIVK 388
           + LC PGDAVVALHRIG ASVIKICIVK
Sbjct: 484 RALCKPGDAVVALHRIGAASVIKICIVK 511

Glycine max (taxid: 3847)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 0
>sp|P22200|KPYC_SOLTU Pyruvate kinase, cytosolic isozyme OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q42954|KPYC_TOBAC Pyruvate kinase, cytosolic isozyme OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|O65595|KPYC_ARATH Probable pyruvate kinase, cytosolic isozyme OS=Arabidopsis thaliana GN=At4g26390 PE=3 SV=1 Back     alignment and function description
>sp|O44006|KPYK_EIMTE Pyruvate kinase OS=Eimeria tenella GN=PYK PE=2 SV=1 Back     alignment and function description
>sp|Q54RF5|KPYK_DICDI Pyruvate kinase OS=Dictyostelium discoideum GN=pyk PE=1 SV=1 Back     alignment and function description
>sp|Q12669|KPYK_ASPNG Pyruvate kinase OS=Aspergillus niger GN=pkiA PE=3 SV=1 Back     alignment and function description
>sp|P00548|KPYK_CHICK Pyruvate kinase muscle isozyme OS=Gallus gallus GN=PKM PE=2 SV=2 Back     alignment and function description
>sp|Q92122|KPYK_XENLA Pyruvate kinase muscle isozyme OS=Xenopus laevis GN=pkm PE=2 SV=1 Back     alignment and function description
>sp|P11980|KPYM_RAT Pyruvate kinase isozymes M1/M2 OS=Rattus norvegicus GN=Pkm PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
68138979 510 pyruvate kinase [Citrus sinensis] 1.0 0.760 0.997 0.0
224097392 512 predicted protein [Populus trichocarpa] 1.0 0.757 0.945 0.0
224109938 512 predicted protein [Populus trichocarpa] 0.997 0.755 0.937 0.0
22296818 511 pyruvate kinase [Glycine max] 1.0 0.759 0.932 0.0
336441833 510 pyruvate kinase [Eriobotrya japonica] 1.0 0.760 0.930 0.0
351721164 511 pyruvate kinase, cytosolic isozyme [Glyc 1.0 0.759 0.932 0.0
351725077 510 pyruvate kinase [Glycine max] gi|2229682 1.0 0.760 0.927 0.0
225439062 510 PREDICTED: pyruvate kinase, cytosolic is 1.0 0.760 0.938 0.0
239056192 510 pyruvate kinase [Vitis vinifera] 1.0 0.760 0.938 0.0
388511219 510 unknown [Lotus japonicus] 1.0 0.760 0.927 0.0
>gi|68138979|gb|AAY86035.1| pyruvate kinase [Citrus sinensis] Back     alignment and taxonomy information
 Score =  784 bits (2024), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 387/388 (99%), Positives = 387/388 (99%)

Query: 1   MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPG 60
           MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPG
Sbjct: 123 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPG 182

Query: 61  VVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE 120
           VVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLV VRKVLGPHAKNIQLMSKVE
Sbjct: 183 VVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVTVRKVLGPHAKNIQLMSKVE 242

Query: 121 NQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLE 180
           NQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLE
Sbjct: 243 NQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLE 302

Query: 181 SMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240
           SMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR
Sbjct: 303 SMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 362

Query: 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILS 300
           AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILS
Sbjct: 363 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILS 422

Query: 301 VVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIE 360
           VVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIE
Sbjct: 423 VVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIE 482

Query: 361 KGLCSPGDAVVALHRIGVASVIKICIVK 388
           KGLCSPGDAVVALHRIGVASVIKICIVK
Sbjct: 483 KGLCSPGDAVVALHRIGVASVIKICIVK 510

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224097392|ref|XP_002310914.1| predicted protein [Populus trichocarpa] gi|118486626|gb|ABK95150.1| unknown [Populus trichocarpa] gi|222850734|gb|EEE88281.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224109938|ref|XP_002315362.1| predicted protein [Populus trichocarpa] gi|222864402|gb|EEF01533.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|22296818|gb|AAM94348.1| pyruvate kinase [Glycine max] Back     alignment and taxonomy information
>gi|336441833|gb|ADZ96382.2| pyruvate kinase [Eriobotrya japonica] Back     alignment and taxonomy information
>gi|351721164|ref|NP_001237968.1| pyruvate kinase, cytosolic isozyme [Glycine max] gi|2497538|sp|Q42806.1|KPYC_SOYBN RecName: Full=Pyruvate kinase, cytosolic isozyme; Short=PK gi|466350|gb|AAA17000.1| pyruvate kinase [Glycine max] Back     alignment and taxonomy information
>gi|351725077|ref|NP_001236056.1| pyruvate kinase [Glycine max] gi|22296820|gb|AAM94349.1| pyruvate kinase [Glycine max] Back     alignment and taxonomy information
>gi|225439062|ref|XP_002266160.1| PREDICTED: pyruvate kinase, cytosolic isozyme [Vitis vinifera] gi|239056172|emb|CAQ58605.1| pyruvate kinase [Vitis vinifera] Back     alignment and taxonomy information
>gi|239056192|emb|CAQ58629.1| pyruvate kinase [Vitis vinifera] Back     alignment and taxonomy information
>gi|388511219|gb|AFK43671.1| unknown [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query388
TAIR|locus:2159577510 AT5G08570 [Arabidopsis thalian 0.997 0.758 0.881 1.2e-182
TAIR|locus:2160599510 AT5G63680 [Arabidopsis thalian 0.997 0.758 0.878 1e-180
TAIR|locus:2161068498 AT5G56350 [Arabidopsis thalian 0.997 0.777 0.782 2.9e-158
TAIR|locus:2131453497 AT4G26390 [Arabidopsis thalian 0.997 0.778 0.759 1.1e-153
TAIR|locus:2095953510 AT3G04050 [Arabidopsis thalian 0.997 0.758 0.675 5.2e-136
TAIR|locus:2078966510 AT3G55650 [Arabidopsis thalian 1.0 0.760 0.655 6.4e-131
TAIR|locus:2078956492 AT3G55810 [Arabidopsis thalian 1.0 0.788 0.655 1.3e-130
TAIR|locus:2092085497 AT3G25960 [Arabidopsis thalian 0.969 0.756 0.660 1.7e-128
DICTYBASE|DDB_G0283247507 pyk "pyruvate kinase" [Dictyos 0.902 0.690 0.514 2e-88
UNIPROTKB|A5D984531 PKM2 "Pyruvate kinase" [Bos ta 0.920 0.672 0.461 5.4e-79
TAIR|locus:2159577 AT5G08570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1772 (628.8 bits), Expect = 1.2e-182, P = 1.2e-182
 Identities = 341/387 (88%), Positives = 373/387 (96%)

Query:     2 ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGV 61
             I+MSYKKLP+DVKPGNTILCADG+I+L VLSCDP+SGTVRCRCEN+AMLGERKNVNLPGV
Sbjct:   124 ISMSYKKLPLDVKPGNTILCADGSISLAVLSCDPESGTVRCRCENSAMLGERKNVNLPGV 183

Query:    62 VVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVEN 121
             VVDLPTLT+KD EDIL WGVPN+IDMIALSFVRKGSDLVNVRKVLG HAK+I LMSKVEN
Sbjct:   184 VVDLPTLTDKDIEDILGWGVPNSIDMIALSFVRKGSDLVNVRKVLGSHAKSIMLMSKVEN 243

Query:   122 QEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLES 181
             QEGV+NFD+ILRETD+FMVARGDLGMEIP+EKIFLAQK+MIYKCNL GKPVVTATQMLES
Sbjct:   244 QEGVINFDEILRETDAFMVARGDLGMEIPIEKIFLAQKLMIYKCNLAGKPVVTATQMLES 303

Query:   182 MIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRA 241
             MIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVK+M +ICIEAESSLDY  
Sbjct:   304 MIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKVMAKICIEAESSLDYNT 363

Query:   242 VFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSV 301
             +FKEMIR+TPLPMSPLESLASSAVRTANKARAKLI+VLTRGG+TA LVAKYRPAVPILSV
Sbjct:   364 IFKEMIRATPLPMSPLESLASSAVRTANKARAKLIIVLTRGGSTANLVAKYRPAVPILSV 423

Query:   302 VVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEK 361
             VVPV+TTDSFDW+CSDE+PARHSLIYRGLIP+LAEGSAKATD+E+TEVI+E ALKSA ++
Sbjct:   424 VVPVMTTDSFDWSCSDESPARHSLIYRGLIPMLAEGSAKATDSEATEVIIEAALKSATQR 483

Query:   362 GLCSPGDAVVALHRIGVASVIKICIVK 388
             GLC+ GDA+VALHRIG ASVIKIC+VK
Sbjct:   484 GLCNRGDAIVALHRIGAASVIKICVVK 510
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0004743 "pyruvate kinase activity" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0006096 "glycolysis" evidence=IEA;ISS
GO:0030955 "potassium ion binding" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
TAIR|locus:2160599 AT5G63680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2161068 AT5G56350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131453 AT4G26390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095953 AT3G04050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078966 AT3G55650 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078956 AT3G55810 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092085 AT3G25960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0283247 pyk "pyruvate kinase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A5D984 PKM2 "Pyruvate kinase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q42954KPYC_TOBAC2, ., 7, ., 1, ., 4, 00.78091.00.7637N/Ano
Q42806KPYC_SOYBN2, ., 7, ., 1, ., 4, 00.93291.00.7592yesno
Q54RF5KPYK_DICDI2, ., 7, ., 1, ., 4, 00.50930.90200.6903yesno
P22200KPYC_SOLTU2, ., 7, ., 1, ., 4, 00.91491.00.7607N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.7.1.400.979
3rd Layer2.7.10.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00080009
RecName- Full=Pyruvate kinase; EC=2.7.1.40; (513 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00030830
lactate dehydrogenase (EC-1.1.1.27) (351 aa)
     •• 0.941
estExt_fgenesh4_pm.C_LG_XII0191
enolase (EC-4.2.1.11) (431 aa)
     •• 0.921
estExt_fgenesh4_pm.C_280132
RecName- Full=Enolase; EC=4.2.1.11; (445 aa)
     •• 0.921
eugene3.00151093
RecName- Full=Enolase; EC=4.2.1.11; (445 aa)
     •• 0.920
estExt_Genewise1_v1.C_LG_VII3984
phosphoenolpyruvate carboxykinase (ATP) (EC-4.1.1.49) (664 aa)
     •• 0.911
estExt_fgenesh4_pg.C_LG_II0983
phosphoenolpyruvate carboxykinase (ATP) (EC-4.1.1.49) (667 aa)
     •• 0.911
gw1.VIII.102.1
hypothetical protein (223 aa)
     •• 0.908
gw1.V.2541.1
hypothetical protein (1081 aa)
     •• 0.908
eugene3.00400106
RecName- Full=Nucleoside diphosphate kinase; EC=2.7.4.6; (149 aa)
     •• 0.907
gw1.X.4176.1
hypothetical protein (223 aa)
     •• 0.907

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
PLN02461511 PLN02461, PLN02461, Probable pyruvate kinase 0.0
cd00288480 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): La 0.0
PTZ00066513 PTZ00066, PTZ00066, pyruvate kinase; Provisional 1e-146
pfam00224348 pfam00224, PK, Pyruvate kinase, barrel domain 1e-141
TIGR01064473 TIGR01064, pyruv_kin, pyruvate kinase 1e-139
COG0469477 COG0469, PykF, Pyruvate kinase [Carbohydrate trans 1e-135
PRK05826465 PRK05826, PRK05826, pyruvate kinase; Provisional 1e-128
PLN02765526 PLN02765, PLN02765, pyruvate kinase 1e-125
PRK09206470 PRK09206, PRK09206, pyruvate kinase; Provisional 1e-121
PRK06354 590 PRK06354, PRK06354, pyruvate kinase; Provisional 1e-108
PTZ00300454 PTZ00300, PTZ00300, pyruvate kinase; Provisional 1e-103
PRK06247476 PRK06247, PRK06247, pyruvate kinase; Provisional 7e-92
PLN02623581 PLN02623, PLN02623, pyruvate kinase 5e-62
PRK06739352 PRK06739, PRK06739, pyruvate kinase; Validated 9e-60
PLN02762509 PLN02762, PLN02762, pyruvate kinase complex alpha 5e-58
PRK14725608 PRK14725, PRK14725, pyruvate kinase; Provisional 5e-26
PRK08187493 PRK08187, PRK08187, pyruvate kinase; Validated 1e-24
pfam02887117 pfam02887, PK_C, Pyruvate kinase, alpha/beta domai 1e-22
>gnl|CDD|215255 PLN02461, PLN02461, Probable pyruvate kinase Back     alignment and domain information 
 Score =  821 bits (2124), Expect = 0.0
 Identities = 332/388 (85%), Positives = 359/388 (92%)

Query: 1   MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPG 60
           MI MSYKKL VDVKPG+ ILCADGTITLTVLSCD ++GTVRCRCEN+AMLGERKNVNLPG
Sbjct: 124 MIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGERKNVNLPG 183

Query: 61  VVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE 120
           VVVDLPTLTEKDKEDIL+WGVPN ID IALSFVRKGSDLV VRKVLG HAK+I L+SKVE
Sbjct: 184 VVVDLPTLTEKDKEDILQWGVPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVE 243

Query: 121 NQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLE 180
           NQEG+ NFDDIL E+D+FMVARGDLGMEIP+EKIFLAQKMMIYKCNL GKPVVTATQMLE
Sbjct: 244 NQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKMMIYKCNLAGKPVVTATQMLE 303

Query: 181 SMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240
           SMIKSPRPTRAEATDVANAVLDGTDCVMLSGE+AAGAYPE+AVK M RIC EAE+SLDY 
Sbjct: 304 SMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYG 363

Query: 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILS 300
           A+FKE++RS PLPMSPLESLASSAVRTANK +A LIVVLTRGGTTA+LVAKYRPAVPILS
Sbjct: 364 ALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYRPAVPILS 423

Query: 301 VVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIE 360
           VVVP +TTDSFDW+CSDE PARHSLIYRGLIP+LAEGSAKATD+ESTE ILE A++ A +
Sbjct: 424 VVVPEITTDSFDWSCSDEAPARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKK 483

Query: 361 KGLCSPGDAVVALHRIGVASVIKICIVK 388
           KGLC PGD+VVALHRIG ASVIKI  VK
Sbjct: 484 KGLCKPGDSVVALHRIGGASVIKILTVK 511

Length = 511
>gnl|CDD|238178 cd00288, Pyruvate_Kinase, Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>gnl|CDD|173361 PTZ00066, PTZ00066, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215802 pfam00224, PK, Pyruvate kinase, barrel domain Back     alignment and domain information
>gnl|CDD|233257 TIGR01064, pyruv_kin, pyruvate kinase Back     alignment and domain information
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215409 PLN02765, PLN02765, pyruvate kinase Back     alignment and domain information
>gnl|CDD|181699 PRK09206, PRK09206, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|235784 PRK06354, PRK06354, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|140321 PTZ00300, PTZ00300, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|180487 PRK06247, PRK06247, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|215334 PLN02623, PLN02623, pyruvate kinase Back     alignment and domain information
>gnl|CDD|180676 PRK06739, PRK06739, pyruvate kinase; Validated Back     alignment and domain information
>gnl|CDD|215407 PLN02762, PLN02762, pyruvate kinase complex alpha subunit Back     alignment and domain information
>gnl|CDD|237804 PRK14725, PRK14725, pyruvate kinase; Provisional Back     alignment and domain information
>gnl|CDD|236178 PRK08187, PRK08187, pyruvate kinase; Validated Back     alignment and domain information
>gnl|CDD|217269 pfam02887, PK_C, Pyruvate kinase, alpha/beta domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 388
PLN02461511 Probable pyruvate kinase 100.0
PTZ00066513 pyruvate kinase; Provisional 100.0
PLN02762509 pyruvate kinase complex alpha subunit 100.0
PLN02765526 pyruvate kinase 100.0
PTZ00300454 pyruvate kinase; Provisional 100.0
PRK09206470 pyruvate kinase; Provisional 100.0
PRK06247476 pyruvate kinase; Provisional 100.0
COG0469477 PykF Pyruvate kinase [Carbohydrate transport and m 100.0
PRK06354 590 pyruvate kinase; Provisional 100.0
cd00288480 Pyruvate_Kinase Pyruvate kinase (PK): Large allost 100.0
PRK05826465 pyruvate kinase; Provisional 100.0
PLN02623581 pyruvate kinase 100.0
KOG2323501 consensus Pyruvate kinase [Carbohydrate transport 100.0
TIGR01064473 pyruv_kin pyruvate kinase. This enzyme is a homote 100.0
PRK06739352 pyruvate kinase; Validated 100.0
PF00224348 PK: Pyruvate kinase, barrel domain; InterPro: IPR0 100.0
PRK14725608 pyruvate kinase; Provisional 100.0
PRK08187493 pyruvate kinase; Validated 100.0
PF02887117 PK_C: Pyruvate kinase, alpha/beta domain; InterPro 99.96
TIGR03239249 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co 99.77
PRK10558256 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro 99.76
COG3836255 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 99.75
PRK10128267 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional 99.75
TIGR02311249 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola 99.69
PF03328221 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family 99.61
TIGR01418782 PEP_synth phosphoenolpyruvate synthase. Also calle 99.46
PRK06464795 phosphoenolpyruvate synthase; Validated 99.44
TIGR01588288 citE citrate lyase, beta subunit. This is a model 99.41
TIGR01417565 PTS_I_fam phosphoenolpyruvate-protein phosphotrans 99.33
PRK11177575 phosphoenolpyruvate-protein phosphotransferase; Pr 99.24
COG2301283 CitE Citrate lyase beta subunit [Carbohydrate tran 98.9
PF02896293 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel 98.5
cd00727511 malate_synt_A Malate synthase A (MSA), present in 98.44
cd00480511 malate_synt Malate synthase catalyzes the Claisen 98.4
PRK09255531 malate synthase; Validated 98.32
TIGR01344511 malate_syn_A malate synthase A. This model represe 98.3
PLN02626551 malate synthase 97.9
PRK11061748 fused phosphoenolpyruvate-protein phosphotransfera 97.65
COG1080574 PtsA Phosphoenolpyruvate-protein kinase (PTS syste 97.41
TIGR01828856 pyru_phos_dikin pyruvate, phosphate dikinase. This 97.37
PRK08649368 inosine 5-monophosphate dehydrogenase; Validated 97.13
PRK09279879 pyruvate phosphate dikinase; Provisional 96.71
TIGR02751506 PEPCase_arch phosphoenolpyruvate carboxylase, arch 96.6
COG3605756 PtsP Signal transduction protein containing GAF an 96.57
cd00381325 IMPDH IMPDH: The catalytic domain of the inosine m 96.56
PF00478352 IMPDH: IMP dehydrogenase / GMP reductase domain; I 96.45
TIGR01304369 IMP_DH_rel_2 IMP dehydrogenase family protein. Thi 96.16
PRK13655494 phosphoenolpyruvate carboxylase; Provisional 96.1
PTZ00314495 inosine-5'-monophosphate dehydrogenase; Provisiona 95.4
PRK07807479 inosine 5-monophosphate dehydrogenase; Validated 95.21
PRK00009911 phosphoenolpyruvate carboxylase; Reviewed 95.11
TIGR01302450 IMP_dehydrog inosine-5'-monophosphate dehydrogenas 94.81
PLN02274505 inosine-5'-monophosphate dehydrogenase 94.66
COG0574740 PpsA Phosphoenolpyruvate synthase/pyruvate phospha 94.65
PRK05096346 guanosine 5'-monophosphate oxidoreductase; Provisi 94.51
PRK13125244 trpA tryptophan synthase subunit alpha; Provisiona 94.45
TIGR01305343 GMP_reduct_1 guanosine monophosphate reductase, eu 94.35
PRK06843404 inosine 5-monophosphate dehydrogenase; Validated 94.2
cd04730236 NPD_like 2-Nitropropane dioxygenase (NPD), one of 93.81
TIGR03151307 enACPred_II putative enoyl-(acyl-carrier-protein) 93.8
PTZ00398974 phosphoenolpyruvate carboxylase; Provisional 93.75
PRK07107502 inosine 5-monophosphate dehydrogenase; Validated 93.69
cd00429211 RPE Ribulose-5-phosphate 3-epimerase (RPE). This e 93.26
cd04726202 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl 92.72
PRK01130221 N-acetylmannosamine-6-phosphate 2-epimerase; Provi 92.63
PF14010491 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3 92.61
PRK08745223 ribulose-phosphate 3-epimerase; Provisional 92.54
TIGR01163210 rpe ribulose-phosphate 3-epimerase. This family co 92.49
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 92.47
TIGR01306321 GMP_reduct_2 guanosine monophosphate reductase, ba 92.44
PTZ00170228 D-ribulose-5-phosphate 3-epimerase; Provisional 92.43
TIGR01303475 IMP_DH_rel_1 IMP dehydrogenase family protein. Thi 92.18
PRK09722229 allulose-6-phosphate 3-epimerase; Provisional 92.17
PRK07565334 dihydroorotate dehydrogenase 2; Reviewed 92.14
PRK02048 611 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 92.13
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 91.93
PRK08883220 ribulose-phosphate 3-epimerase; Provisional 91.91
PRK13813215 orotidine 5'-phosphate decarboxylase; Provisional 91.89
cd02940299 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM 91.78
PRK05581220 ribulose-phosphate 3-epimerase; Validated 91.62
PLN02591250 tryptophan synthase 91.58
PRK07226267 fructose-bisphosphate aldolase; Provisional 91.58
PRK05458326 guanosine 5'-monophosphate oxidoreductase; Provisi 91.52
PRK05567486 inosine 5'-monophosphate dehydrogenase; Reviewed 91.44
PF01959354 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); Inte 91.19
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 91.05
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 90.91
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 90.83
PLN02334229 ribulose-phosphate 3-epimerase 90.77
cd04722200 TIM_phosphate_binding TIM barrel proteins share a 90.65
PRK08318420 dihydropyrimidine dehydrogenase subunit B; Validat 90.57
PRK02290344 3-dehydroquinate synthase; Provisional 90.52
PRK13307391 bifunctional formaldehyde-activating enzyme/3-hexu 90.36
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 90.2
cd04729219 NanE N-acetylmannosamine-6-phosphate epimerase (Na 90.18
TIGR02090363 LEU1_arch isopropylmalate/citramalate/homocitrate 90.16
cd07944266 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- 89.92
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 89.83
COG2352910 Ppc Phosphoenolpyruvate carboxylase [Energy produc 89.8
PRK13397250 3-deoxy-7-phosphoheptulonate synthase; Provisional 89.78
PF00311794 PEPcase: Phosphoenolpyruvate carboxylase; InterPro 89.65
TIGR01361260 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate 89.62
PRK00915 513 2-isopropylmalate synthase; Validated 89.35
PRK08227264 autoinducer 2 aldolase; Validated 88.99
cd07945280 DRE_TIM_CMS Leptospira interrogans citramalate syn 88.97
TIGR00973 494 leuA_bact 2-isopropylmalate synthase, bacterial ty 88.84
PRK11858378 aksA trans-homoaconitate synthase; Reviewed 88.78
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 88.62
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 88.35
PF01791236 DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 88.34
cd00958235 DhnA Class I fructose-1,6-bisphosphate (FBP) aldol 88.05
PRK09389 488 (R)-citramalate synthase; Provisional 87.88
PLN02925 733 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 87.59
PRK00694 606 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha 87.4
PRK13398266 3-deoxy-7-phosphoheptulonate synthase; Provisional 87.32
cd00640244 Trp-synth-beta_II Tryptophan synthase beta superfa 87.15
PRK07695201 transcriptional regulator TenI; Provisional 87.1
cd04732234 HisA HisA. Phosphoribosylformimino-5-aminoimidazol 86.96
PRK12595360 bifunctional 3-deoxy-7-phosphoheptulonate synthase 86.83
PRK15452 443 putative protease; Provisional 86.75
PF00682237 HMGL-like: HMGL-like of this family is not conserv 86.69
PF04551359 GcpE: GcpE protein; InterPro: IPR004588 This prote 86.63
PRK06852304 aldolase; Validated 86.39
PRK04302223 triosephosphate isomerase; Provisional 86.13
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 86.1
TIGR00977 526 LeuA_rel 2-isopropylmalate synthase/homocitrate sy 86.02
TIGR01949258 AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep 86.02
TIGR00612346 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho 86.01
TIGR01182204 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho 85.53
TIGR00126211 deoC deoxyribose-phosphate aldolase. Deoxyribose-p 85.36
TIGR03128206 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the 85.33
PF01274526 Malate_synthase: Malate synthase; InterPro: IPR001 85.14
TIGR02660365 nifV_homocitr homocitrate synthase NifV. This fami 85.08
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 84.91
PRK06015201 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 84.7
PRK05692287 hydroxymethylglutaryl-CoA lyase; Provisional 84.58
cd00452190 KDPG_aldolase KDPG and KHG aldolase. This family b 84.55
PRK07028430 bifunctional hexulose-6-phosphate synthase/ribonuc 84.53
PRK08385278 nicotinate-nucleotide pyrophosphorylase; Provision 84.32
PRK05848273 nicotinate-nucleotide pyrophosphorylase; Provision 84.27
PLN02746347 hydroxymethylglutaryl-CoA lyase 84.01
COG0826347 Collagenase and related proteases [Posttranslation 83.78
cd00959203 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of 83.75
PLN02321 632 2-isopropylmalate synthase 83.33
TIGR01037300 pyrD_sub1_fam dihydroorotate dehydrogenase (subfam 83.24
PRK00507221 deoxyribose-phosphate aldolase; Provisional 83.12
cd04724242 Tryptophan_synthase_alpha Ttryptophan synthase (TR 83.08
PF00290259 Trp_syntA: Tryptophan synthase alpha chain; InterP 83.08
PRK15447301 putative protease; Provisional 83.02
PRK06552213 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 82.6
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 82.56
PRK08091228 ribulose-phosphate 3-epimerase; Validated 82.42
PRK07428288 nicotinate-nucleotide pyrophosphorylase; Provision 82.31
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 82.16
PRK00278260 trpC indole-3-glycerol-phosphate synthase; Reviewe 81.8
PRK00043212 thiE thiamine-phosphate pyrophosphorylase; Reviewe 81.78
PRK05718212 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog 81.75
PRK07896289 nicotinate-nucleotide pyrophosphorylase; Provision 81.52
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 81.51
PF03060330 NMO: Nitronate monooxygenase; InterPro: IPR004136 81.5
COG1751186 Uncharacterized conserved protein [Function unknow 81.41
COG1465376 Predicted alternative 3-dehydroquinate synthase [A 81.39
PRK06512221 thiamine-phosphate pyrophosphorylase; Provisional 81.31
KOG2550503 consensus IMP dehydrogenase/GMP reductase [Nucleot 81.26
cd02809299 alpha_hydroxyacid_oxid_FMN Family of homologous FM 81.25
PRK05581220 ribulose-phosphate 3-epimerase; Validated 80.94
TIGR01163210 rpe ribulose-phosphate 3-epimerase. This family co 80.88
TIGR00007230 phosphoribosylformimino-5-aminoimidazole carboxami 80.13
>PLN02461 Probable pyruvate kinase Back     alignment and domain information 
Probab=100.00  E-value=2.5e-109  Score=849.91  Aligned_cols=388  Identities=86%  Similarity=1.267  Sum_probs=361.5

Q ss_pred             CeeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhcc
Q 016513            1 MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWG   80 (388)
Q Consensus         1 ~i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~   80 (388)
                      .|++||++|++.+++||+||+|||+|.|+|++++.+++.++|+|.+||.|+++||+|+||..+++|+|||+|++||.+|+
T Consensus       124 ~i~v~~~~~~~~v~~Gd~IlidDG~i~l~V~~~~~~~~~i~~~v~~gG~l~s~Kgvnlpg~~~~lp~ltekD~~di~~f~  203 (511)
T PLN02461        124 MIAMSYKKLAVDVKPGSVILCADGTITLTVLSCDVEAGTVRCRCENSAMLGERKNVNLPGVVVDLPTLTEKDKEDILQWG  203 (511)
T ss_pred             EEEeccHHHHhhcCCCCEEEEeCCEEEEEEEEEecCCCEEEEEEecCcEecCCceeeecccccCCCCCCHHHHHHHHHHH
Confidence            37899999999999999999999999999998755578999999999999999999999999999999999999973599


Q ss_pred             ccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHH
Q 016513           81 VPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKM  160 (388)
Q Consensus        81 l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~  160 (388)
                      +++|+|+|++|||++++||+++|+++++.+.++.|||||||++|++||+||++++|||||||||||+|+|+++||.+||+
T Consensus       204 ~~~~vD~ia~SFVr~a~DV~~~r~~l~~~~~~~~IiAKIE~~~av~nl~eIi~~sDgIMVARGDLGvEip~e~vp~~Qk~  283 (511)
T PLN02461        204 VPNKIDFIALSFVRKGSDLVEVRKVLGEHAKSILLISKVENQEGLDNFDDILAESDAFMVARGDLGMEIPIEKIFLAQKM  283 (511)
T ss_pred             hhcCCCEEEECCCCCHHHHHHHHHHHHhCCCCCCEEEEECCHHHHHHHHHHHHhcCEEEEeccccccccCHHHhHHHHHH
Confidence            99999999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchH
Q 016513          161 MIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR  240 (388)
Q Consensus       161 ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~  240 (388)
                      |+++|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||+|+||+|||++|++||+++|+.++|.
T Consensus       284 II~~c~~~gkPVIvATQmLeSMi~np~PTRAEvsDVanAV~dG~D~vMLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~  363 (511)
T PLN02461        284 MIYKCNLAGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVKTMARICREAEASLDYG  363 (511)
T ss_pred             HHHHHHHcCCCeEEeehhHHHHhhCCCCchHHHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHHHHHHHhccchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999977665


Q ss_pred             HHHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCccc
Q 016513          241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETP  320 (388)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~  320 (388)
                      .+|.........+.+..+++|.+|+++|++++|++|++||+||+||+++|||||.|||||+..|+++|.+++|+|+++.+
T Consensus       364 ~~~~~~~~~~~~~~~~~~~ia~sav~~A~~l~a~aIiv~T~sG~tA~~iSk~RP~~pIia~t~~~~~~~~~~w~~~~~~~  443 (511)
T PLN02461        364 ALFKEIMRSAPLPMSPLESLASSAVRTANKVKASLIVVLTRGGTTARLVAKYRPAVPILSVVVPEITTDSFDWSCSDEAP  443 (511)
T ss_pred             hhhhhhcccccccCChHHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHhhCCCCCEEEEecCcccccccccccCCHHH
Confidence            55544321111133567999999999999999999999999999999999999999999996677888899999999999


Q ss_pred             ccccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeecCCCceEEEEEeC
Q 016513          321 ARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRIGVASVIKICIVK  388 (388)
Q Consensus       321 aR~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~g~tn~ikI~~v~  388 (388)
                      +|||+|+|||+|++++......|..+.+++++.|++++++.|++++||.||+++|.|+||++||..++
T Consensus       444 ar~l~L~~GV~P~~~~~~~~~~~~~~~~~~i~~a~~~~~~~g~~~~Gd~vvvv~~~g~tn~i~v~~v~  511 (511)
T PLN02461        444 ARHSLIYRGLIPVLAEGSAKATDSESTEEILEAAIEHAKKKGLCKPGDSVVALHRIGGASVIKILTVK  511 (511)
T ss_pred             hhhhheecceEEEEecccccccccCCHHHHHHHHHHHHHHcCCCCCcCEEEEEecCCCCcEEEEEEeC
Confidence            99999999999998875333346778999999999999999999999999999999999999999875

>PTZ00066 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02762 pyruvate kinase complex alpha subunit Back     alignment and domain information
>PLN02765 pyruvate kinase Back     alignment and domain information
>PTZ00300 pyruvate kinase; Provisional Back     alignment and domain information
>PRK09206 pyruvate kinase; Provisional Back     alignment and domain information
>PRK06247 pyruvate kinase; Provisional Back     alignment and domain information
>COG0469 PykF Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK06354 pyruvate kinase; Provisional Back     alignment and domain information
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors Back     alignment and domain information
>PRK05826 pyruvate kinase; Provisional Back     alignment and domain information
>PLN02623 pyruvate kinase Back     alignment and domain information
>KOG2323 consensus Pyruvate kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01064 pyruv_kin pyruvate kinase Back     alignment and domain information
>PRK06739 pyruvate kinase; Validated Back     alignment and domain information
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2 Back     alignment and domain information
>PRK14725 pyruvate kinase; Provisional Back     alignment and domain information
>PRK08187 pyruvate kinase; Validated Back     alignment and domain information
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2 Back     alignment and domain information
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase Back     alignment and domain information
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional Back     alignment and domain information
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional Back     alignment and domain information
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 Back     alignment and domain information
>TIGR01418 PEP_synth phosphoenolpyruvate synthase Back     alignment and domain information
>PRK06464 phosphoenolpyruvate synthase; Validated Back     alignment and domain information
>TIGR01588 citE citrate lyase, beta subunit Back     alignment and domain information
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase Back     alignment and domain information
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional Back     alignment and domain information
>COG2301 CitE Citrate lyase beta subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02896 PEP-utilizers_C: PEP-utilising enzyme, TIM barrel domain; InterPro: IPR000121 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ] Back     alignment and domain information
>cd00727 malate_synt_A Malate synthase A (MSA), present in some bacteria, plants and fungi Back     alignment and domain information
>cd00480 malate_synt Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA , which hydrolyzes to malate and CoA Back     alignment and domain information
>PRK09255 malate synthase; Validated Back     alignment and domain information
>TIGR01344 malate_syn_A malate synthase A Back     alignment and domain information
>PLN02626 malate synthase Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase Back     alignment and domain information
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PRK09279 pyruvate phosphate dikinase; Provisional Back     alignment and domain information
>TIGR02751 PEPCase_arch phosphoenolpyruvate carboxylase, archaeal type Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase Back     alignment and domain information
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase Back     alignment and domain information
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein Back     alignment and domain information
>PRK13655 phosphoenolpyruvate carboxylase; Provisional Back     alignment and domain information
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional Back     alignment and domain information
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>PRK00009 phosphoenolpyruvate carboxylase; Reviewed Back     alignment and domain information
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>PLN02274 inosine-5'-monophosphate dehydrogenase Back     alignment and domain information
>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional Back     alignment and domain information
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic Back     alignment and domain information
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites Back     alignment and domain information
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II Back     alignment and domain information
>PTZ00398 phosphoenolpyruvate carboxylase; Provisional Back     alignment and domain information
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated Back     alignment and domain information
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) Back     alignment and domain information
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) Back     alignment and domain information
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional Back     alignment and domain information
>PF14010 PEPcase_2: Phosphoenolpyruvate carboxylase; PDB: 3ODM_C Back     alignment and domain information
>PRK08745 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>TIGR01163 rpe ribulose-phosphate 3-epimerase Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial Back     alignment and domain information
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional Back     alignment and domain information
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein Back     alignment and domain information
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>PRK08883 ribulose-phosphate 3-epimerase; Provisional Back     alignment and domain information
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional Back     alignment and domain information
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PRK07226 fructose-bisphosphate aldolase; Provisional Back     alignment and domain information
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional Back     alignment and domain information
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed Back     alignment and domain information
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4 Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PLN02334 ribulose-phosphate 3-epimerase Back     alignment and domain information
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure Back     alignment and domain information
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated Back     alignment and domain information
>PRK02290 3-dehydroquinate synthase; Provisional Back     alignment and domain information
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate Back     alignment and domain information
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases Back     alignment and domain information
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>COG2352 Ppc Phosphoenolpyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional Back     alignment and domain information
>PF00311 PEPcase: Phosphoenolpyruvate carboxylase; InterPro: IPR021135 Phosphoenolpyruvate carboxylase (PEPCase), an enzyme found in all multicellular plants, catalyses the formation of oxaloacetate from phosphoenolpyruvate (PEP) and a hydrocarbonate ion [] Back     alignment and domain information
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase Back     alignment and domain information
>PRK00915 2-isopropylmalate synthase; Validated Back     alignment and domain information
>PRK08227 autoinducer 2 aldolase; Validated Back     alignment and domain information
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type Back     alignment and domain information
>PRK11858 aksA trans-homoaconitate synthase; Reviewed Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism Back     alignment and domain information
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea Back     alignment and domain information
>PRK09389 (R)-citramalate synthase; Provisional Back     alignment and domain information
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase Back     alignment and domain information
>PRK00694 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Validated Back     alignment and domain information
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional Back     alignment and domain information
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions Back     alignment and domain information
>PRK07695 transcriptional regulator TenI; Provisional Back     alignment and domain information
>cd04732 HisA HisA Back     alignment and domain information
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed Back     alignment and domain information
>PRK15452 putative protease; Provisional Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli Back     alignment and domain information
>PRK06852 aldolase; Validated Back     alignment and domain information
>PRK04302 triosephosphate isomerase; Provisional Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein Back     alignment and domain information
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase Back     alignment and domain information
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase Back     alignment and domain information
>TIGR01182 eda Entner-Doudoroff aldolase Back     alignment and domain information
>TIGR00126 deoC deoxyribose-phosphate aldolase Back     alignment and domain information
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase Back     alignment and domain information
>PF01274 Malate_synthase: Malate synthase; InterPro: IPR001465 Malate synthase (2 Back     alignment and domain information
>TIGR02660 nifV_homocitr homocitrate synthase NifV Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional Back     alignment and domain information
>cd00452 KDPG_aldolase KDPG and KHG aldolase Back     alignment and domain information
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated Back     alignment and domain information
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PLN02746 hydroxymethylglutaryl-CoA lyase Back     alignment and domain information
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family Back     alignment and domain information
>PLN02321 2-isopropylmalate synthase Back     alignment and domain information
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein Back     alignment and domain information
>PRK00507 deoxyribose-phosphate aldolase; Provisional Back     alignment and domain information
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) Back     alignment and domain information
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 Back     alignment and domain information
>PRK15447 putative protease; Provisional Back     alignment and domain information
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK08091 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed Back     alignment and domain information
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed Back     alignment and domain information
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional Back     alignment and domain information
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 Back     alignment and domain information
>COG1751 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional Back     alignment and domain information
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>PRK05581 ribulose-phosphate 3-epimerase; Validated Back     alignment and domain information
>TIGR01163 rpe ribulose-phosphate 3-epimerase Back     alignment and domain information
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
3eoe_A511 Crystal Structure Of Pyruvate Kinase From Toxoplasm 1e-100
3khd_A520 Crystal Structure Of Pff1300w. Length = 520 4e-98
4drs_A526 Crystal Structure Of Cryptosporidium Parvum Pyruvat 5e-89
3ma8_A534 Crystal Structure Of Cgd1_2040, A Pyruvate Kinase F 5e-89
3srf_C551 Human M1 Pyruvate Kinase Length = 551 9e-88
1f3x_A530 S402p Mutant Of Rabbit Muscle Pyruvate Kinase Lengt 1e-87
4g1n_A518 Pkm2 In Complex With An Activator Length = 518 2e-87
3u2z_A533 Activator-Bound Structure Of Human Pyruvate Kinase 2e-87
4b2d_D548 Human Pkm2 With L-serine And Fbp Bound Length = 548 3e-87
1zjh_A548 Structure Of Human Muscle Pyruvate Kinase (Pkm2) Le 3e-87
3bjf_A518 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 3e-87
3srd_A551 Human M2 Pyruvate Kinase In Complex With Fructose 1 3e-87
1pkm_A530 The Refined Three-Dimensional Structure Of Cat Musc 3e-87
3bjt_A530 Pyruvate Kinase M2 Is A Phosphotyrosine Binding Pro 3e-87
3gqy_A550 Activator-Bound Structure Of Human Pyruvate Kinase 3e-87
1t5a_A567 Human Pyruvate Kinase M2 Length = 567 4e-87
3g2g_A533 S437y Mutant Of Human Muscle Pyruvate Kinase, Isofo 4e-87
1aqf_A530 Pyruvate Kinase From Rabbit Muscle With Mg, K, And 4e-87
1pkn_A530 Structure Of Rabbit Muscle Pyruvate Kinase Complexe 7e-87
2g50_A530 The Location Of The Allosteric Amino Acid Binding S 7e-87
3n25_A531 The Structure Of Muscle Pyruvate Kinase In Complex 8e-87
1f3w_A530 Recombinant Rabbit Muscle Pyruvate Kinase Length = 8e-87
3qv9_A499 Crystal Structure Of Trypanosoma Cruzi Pyruvate Kin 6e-84
4ip7_A543 Structure Of The S12d Variant Of Human Liver Pyruva 8e-84
2vgg_A528 Human Erythrocyte Pyruvate Kinase: R479h Mutant Len 9e-84
2vgb_A528 Human Erythrocyte Pyruvate Kinase Length = 528 9e-84
1pkl_A499 The Structure Of Leishmania Pyruvate Kinase Length 2e-83
3pp7_A498 Crystal Structure Of Leishmania Mexicana Pyruvate K 2e-83
4ima_A543 The Structure Of C436m-hlpyk In Complex With Citrat 3e-83
2vgi_A528 Human Erythrocyte Pyruvate Kinase: R486w Mutant Len 3e-83
2vgf_A528 Human Erythrocyte Pyruvate Kinase: T384m Mutant Len 4e-83
3e0v_A539 Crystal Structure Of Pyruvate Kinase From Leishmani 2e-82
3t05_A 606 Crystal Structure Of S. Aureus Pyruvate Kinase Leng 1e-81
2e28_A 587 Crystal Structure Analysis Of Pyruvate Kinase From 1e-78
1pky_A470 Pyruvate Kinase From E. Coli In The T-State Length 3e-78
1e0u_A470 Structure R271l Mutant Of E. Coli Pyruvate Kinase L 5e-78
1a3w_A500 Pyruvate Kinase From Saccharomyces Cerevisiae Compl 1e-77
1e0t_A470 R292d Mutant Of E. Coli Pyruvate Kinase Length = 47 3e-77
3qtg_A461 Crystal Structure Of Pyruvate Kinase From Pyrobacul 5e-29
>pdb|3EOE|A Chain A, Crystal Structure Of Pyruvate Kinase From Toxoplasma Gondii, 55.M00007 Length = 511 Back     alignment and structure 
Iteration: 1

 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 190/392 (48%), Positives = 264/392 (67%), Gaps = 26/392 (6%)
Query: 2   ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGV 61
           I  SY  LP  VKPGNTIL ADG++++ V+     S  V  + +NTA +GERKN+NLP V
Sbjct: 141 IACSYGALPQSVKPGNTILIADGSLSVKVVEVG--SDYVITQAQNTATIGERKNMNLPNV 198
Query: 62  VVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVEN 121
            V LP + EKDK DIL +G+P   + IA SFV+   D+  +R +LGP  ++I+++ K+EN
Sbjct: 199 KVQLPVIGEKDKHDILNFGIPMGCNFIAASFVQSADDVRYIRGLLGPRGRHIRIIPKIEN 258
Query: 122 QEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLES 181
            EG+VNFD+IL E D  M+ARGDLGMEIP EK+FLAQKMMI KCN+VGKPV+TATQMLES
Sbjct: 259 VEGLVNFDEILAEADGIMIARGDLGMEIPPEKVFLAQKMMIAKCNVVGKPVITATQMLES 318
Query: 182 MIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRA 241
           MIK+PRPTRAEA DVANAVLDGTDCVMLSGE+A G +P I V+ M RIC EAE+ +DY A
Sbjct: 319 MIKNPRPTRAEAADVANAVLDGTDCVMLSGETANGEFPVITVETMARICYEAETCVDYPA 378
Query: 242 VFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSV 301
           +++ M  + P P+S  E++A +AV TA    A +I+ LT  G TA+L+AKYRP  PIL++
Sbjct: 379 LYRAMCLAVPPPISTQEAVARAAVETAECVNAAIILALTETGQTARLIAKYRPMQPILAL 438
Query: 302 VVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEK 361
                         + E+  +H  + RG+       + +    + T+ ++  A+  A E+
Sbjct: 439 -------------SASESTIKHLQVIRGVT------TMQVPSFQGTDHVIRNAIVVAKER 479
Query: 362 GLCSPGDAVVALHRI-----GVASVIKICIVK 388
            L + G+++VA+H +     G ++++K+  V+
Sbjct: 480 ELVTEGESIVAVHGMKEEVAGSSNLLKVLTVE 511
>pdb|3KHD|A Chain A, Crystal Structure Of Pff1300w. Length = 520 Back     alignment and structure
>pdb|4DRS|A Chain A, Crystal Structure Of Cryptosporidium Parvum Pyruvate Kinase Length = 526 Back     alignment and structure
>pdb|3MA8|A Chain A, Crystal Structure Of Cgd1_2040, A Pyruvate Kinase From Cryptosporidium Parvum Length = 534 Back     alignment and structure
>pdb|3SRF|C Chain C, Human M1 Pyruvate Kinase Length = 551 Back     alignment and structure
>pdb|1F3X|A Chain A, S402p Mutant Of Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|4G1N|A Chain A, Pkm2 In Complex With An Activator Length = 518 Back     alignment and structure
>pdb|3U2Z|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 533 Back     alignment and structure
>pdb|4B2D|D Chain D, Human Pkm2 With L-serine And Fbp Bound Length = 548 Back     alignment and structure
>pdb|1ZJH|A Chain A, Structure Of Human Muscle Pyruvate Kinase (Pkm2) Length = 548 Back     alignment and structure
>pdb|3BJF|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 518 Back     alignment and structure
>pdb|3SRD|A Chain A, Human M2 Pyruvate Kinase In Complex With Fructose 1-6 Bisphosphate And Oxalate. Length = 551 Back     alignment and structure
>pdb|1PKM|A Chain A, The Refined Three-Dimensional Structure Of Cat Muscle (M1) Pyruvate Kinase, At A Resolution Of 2.6 Angstroms Length = 530 Back     alignment and structure
>pdb|3BJT|A Chain A, Pyruvate Kinase M2 Is A Phosphotyrosine Binding Protein Length = 530 Back     alignment and structure
>pdb|3GQY|A Chain A, Activator-Bound Structure Of Human Pyruvate Kinase M2 Length = 550 Back     alignment and structure
>pdb|1T5A|A Chain A, Human Pyruvate Kinase M2 Length = 567 Back     alignment and structure
>pdb|3G2G|A Chain A, S437y Mutant Of Human Muscle Pyruvate Kinase, Isoform M2 Length = 533 Back     alignment and structure
>pdb|1AQF|A Chain A, Pyruvate Kinase From Rabbit Muscle With Mg, K, And L- Phospholactate Length = 530 Back     alignment and structure
>pdb|1PKN|A Chain A, Structure Of Rabbit Muscle Pyruvate Kinase Complexed With Mn2+, K+, And Pyruvate Length = 530 Back     alignment and structure
>pdb|2G50|A Chain A, The Location Of The Allosteric Amino Acid Binding Site Of Muscle Pyruvate Kinase. Length = 530 Back     alignment and structure
>pdb|3N25|A Chain A, The Structure Of Muscle Pyruvate Kinase In Complex With Proline, Pyruvate, And Mn2+ Length = 531 Back     alignment and structure
>pdb|1F3W|A Chain A, Recombinant Rabbit Muscle Pyruvate Kinase Length = 530 Back     alignment and structure
>pdb|3QV9|A Chain A, Crystal Structure Of Trypanosoma Cruzi Pyruvate Kinase(Tcpyk)in Complex With Ponceau S. Length = 499 Back     alignment and structure
>pdb|4IP7|A Chain A, Structure Of The S12d Variant Of Human Liver Pyruvate Kinase In Complex With Citrate And Fbp. Length = 543 Back     alignment and structure
>pdb|2VGG|A Chain A, Human Erythrocyte Pyruvate Kinase: R479h Mutant Length = 528 Back     alignment and structure
>pdb|2VGB|A Chain A, Human Erythrocyte Pyruvate Kinase Length = 528 Back     alignment and structure
>pdb|1PKL|A Chain A, The Structure Of Leishmania Pyruvate Kinase Length = 499 Back     alignment and structure
>pdb|3PP7|A Chain A, Crystal Structure Of Leishmania Mexicana Pyruvate Kinase In Complex With The Drug Suramin, An Inhibitor Of Glycolysis. Length = 498 Back     alignment and structure
>pdb|4IMA|A Chain A, The Structure Of C436m-hlpyk In Complex With Citrate/mn/atp/fru-1,6-bp Length = 543 Back     alignment and structure
>pdb|2VGI|A Chain A, Human Erythrocyte Pyruvate Kinase: R486w Mutant Length = 528 Back     alignment and structure
>pdb|2VGF|A Chain A, Human Erythrocyte Pyruvate Kinase: T384m Mutant Length = 528 Back     alignment and structure
>pdb|3E0V|A Chain A, Crystal Structure Of Pyruvate Kinase From Leishmania Mexicana In Complex With Sulphate Ions Length = 539 Back     alignment and structure
>pdb|3T05|A Chain A, Crystal Structure Of S. Aureus Pyruvate Kinase Length = 606 Back     alignment and structure
>pdb|2E28|A Chain A, Crystal Structure Analysis Of Pyruvate Kinase From Bacillus Stearothermophilus Length = 587 Back     alignment and structure
>pdb|1PKY|A Chain A, Pyruvate Kinase From E. Coli In The T-State Length = 470 Back     alignment and structure
>pdb|1E0U|A Chain A, Structure R271l Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|1A3W|A Chain A, Pyruvate Kinase From Saccharomyces Cerevisiae Complexed With Fbp, Pg, Mn2+ And K+ Length = 500 Back     alignment and structure
>pdb|1E0T|A Chain A, R292d Mutant Of E. Coli Pyruvate Kinase Length = 470 Back     alignment and structure
>pdb|3QTG|A Chain A, Crystal Structure Of Pyruvate Kinase From Pyrobaculum Aerophilum Length = 461 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query388
3khd_A520 Pyruvate kinase; malaria, structural genomics, str 0.0
3gg8_A511 Pyruvate kinase; malaria, genomics, proteomics, gl 0.0
3hqn_D499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 0.0
3ma8_A534 Pyruvate kinase; parasitology, pyruvate kiase, gly 0.0
1a3w_A500 Pyruvate kinase; allosteric regulation, tranferase 0.0
1e0t_A470 Pyruvate kinase, PK; phosphotransferase, glycolysi 0.0
3gr4_A550 Pyruvate kinase isozymes M1/M2; activator, acetyla 0.0
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 0.0
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 1e-177
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 1e-142
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-08
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Length = 520 Back     alignment and structure
 Score =  557 bits (1439), Expect = 0.0
 Identities = 178/393 (45%), Positives = 261/393 (66%), Gaps = 26/393 (6%)

Query: 1   MITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPG 60
            I  SYKKLP  VKPGN IL ADG+++  VL        V     N+A++GERKN+NLP 
Sbjct: 149 CIACSYKKLPQSVKPGNIILIADGSVSCKVLETHED--HVITEVLNSAVIGERKNMNLPN 206

Query: 61  VVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVE 120
           V VDLP ++EKDK DIL + +P   + IA SF++   D+  +R +LGP  ++I+++ K+E
Sbjct: 207 VKVDLPIISEKDKNDILNFAIPMGCNFIAASFIQSADDVRLIRNLLGPRGRHIKIIPKIE 266

Query: 121 NQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLE 180
           N EG+++FD IL E+D  M+ARGDLGMEI  EK+FLAQK+MI KCNL GKP++TATQMLE
Sbjct: 267 NIEGIIHFDKILAESDGIMIARGDLGMEISPEKVFLAQKLMISKCNLQGKPIITATQMLE 326

Query: 181 SMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYR 240
           SM K+PRPTRAE TDVANAVLDGTDCVMLSGE+A G +P  AV IM +IC+EAE+ +DY+
Sbjct: 327 SMTKNPRPTRAEVTDVANAVLDGTDCVMLSGETAGGKFPVEAVTIMSKICLEAEACIDYK 386

Query: 241 AVFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILS 300
            +++ ++ +   P+S  E++A SAV TA   +A LI+ LT  G TA+L+AKY+P+  IL+
Sbjct: 387 LLYQSLVNAIETPISVQEAVARSAVETAESIQASLIIALTETGYTARLIAKYKPSCTILA 446

Query: 301 VVVPVLTTDSFDWTCSDETPARHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIE 360
           +              + ++  +   ++RG+  I           + T++++  A++ A +
Sbjct: 447 L-------------SASDSTVKCLNVHRGVTCIKVG------SFQGTDIVIRNAIEIAKQ 487

Query: 361 KGLCSPGDAVVALHRI-----GVASVIKICIVK 388
           + +   GD+V+A+H I     G  +++K+  ++
Sbjct: 488 RNMAKVGDSVIAIHGIKEEVSGGTNLMKVVQIE 520
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Length = 511 Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Length = 499 Back     alignment and structure
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase, magnesium, transferase, structural genomi structural genomics consortium; HET: CIT; 2.64A {Cryptosporidium parvum} Length = 534 Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Length = 500 Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Length = 470 Back     alignment and structure
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A 3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A* 2vgf_A* 2vgg_A* ... Length = 550 Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* Length = 606 Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Length = 587 Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Length = 461 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
3gr4_A550 Pyruvate kinase isozymes M1/M2; activator, acetyla 100.0
4drs_A526 Pyruvate kinase; glycolysis, allosteric EN transfe 100.0
3khd_A520 Pyruvate kinase; malaria, structural genomics, str 100.0
3gg8_A511 Pyruvate kinase; malaria, genomics, proteomics, gl 100.0
3hqn_D499 Pyruvate kinase, PK; TIM barrel, T-state enzyme, t 100.0
3t05_A 606 Pyruvate kinase, PK; tetramer, glycolysis, transfe 100.0
1e0t_A470 Pyruvate kinase, PK; phosphotransferase, glycolysi 100.0
2e28_A 587 Pyruvate kinase, PK; allosteric, transferase; 2.40 100.0
3qtg_A461 Pyruvate kinase, PK; TIM barrel, glycolysis, trans 100.0
1a3w_A500 Pyruvate kinase; allosteric regulation, tranferase 100.0
1izc_A339 Macrophomate synthase intermolecular diels-aldera; 99.81
2vws_A267 YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher 99.76
2v5j_A287 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l 99.76
1dxe_A256 2-dehydro-3-deoxy-galactarate aldolase; class II a 99.73
3qz6_A261 HPCH/HPAI aldolase; structural genomics, PSI-biolo 99.73
1sgj_A284 Citrate lyase, beta subunit; trimer, TIM barrel, s 99.66
2xz9_A324 Phosphoenolpyruvate-protein kinase (PTS system EI 99.48
3qll_A316 Citrate lyase; beta barrel; 2.45A {Yersinia pestis 99.42
1u5h_A273 CITE; TIM barrel, structural genomics, PSI, protei 99.34
2ols_A794 Phosphoenolpyruvate synthase; MC structural genomi 99.29
3qqw_A332 Putative citrate lyase; TIM beta/alpha-barrel, str 99.26
2hwg_A575 Phosphoenolpyruvate-protein phosphotransferase; en 99.25
2wqd_A572 Phosphoenolpyruvate-protein phosphotransferase; ki 99.21
3r4i_A339 Citrate lyase; TIM beta/alpha-barrel, structural g 99.18
3oyz_A433 Malate synthase; TIM barrel, transferase; HET: ACO 99.02
1vbg_A876 Pyruvate,orthophosphate dikinase; transferase, mai 98.59
1kbl_A873 PPDK, pyruvate phosphate dikinase; transferase, ph 98.48
3cuz_A532 MSA, malate synthase A; TIM barrel, cytoplasm, gly 98.18
3cux_A528 Malate synthase; TIM barrel, glyoxylate bypass, tr 98.07
1p7t_A731 MSG, malate synthase G; TIM barrel, glyoxylate cyc 97.97
1h6z_A913 Pyruvate phosphate dikinase; transferase, tropical 97.72
2x0s_A913 Pyruvate phosphate dikinase; transferase, tropical 97.07
4af0_A556 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 96.0
1vp8_A201 Hypothetical protein AF0103; putative pyruvate kin 95.64
1t57_A206 Conserved protein MTH1675; structural genomics, FM 95.64
3odm_A560 Pepcase, PEPC, phosphoenolpyruvate carboxylase; be 95.4
3f4w_A211 Putative hexulose 6 phosphate synthase; humps, mal 95.32
1jqo_A 970 Phosphoenolpyruvate carboxylase; beta barrel, carb 95.14
4fo4_A366 Inosine 5'-monophosphate dehydrogenase; structural 94.57
4fxs_A496 Inosine-5'-monophosphate dehydrogenase; structural 94.49
3usb_A511 Inosine-5'-monophosphate dehydrogenase; structural 94.34
3ffs_A400 Inosine-5-monophosphate dehydrogenase; beta-alpha 94.29
3khj_A361 Inosine-5-monophosphate dehydrogenase; enzyme-inhi 94.12
4avf_A490 Inosine-5'-monophosphate dehydrogenase; oxidoreduc 94.03
1jqn_A883 Pepcase, PEPC, phosphoenolpyruvate carboxylase; be 93.99
3inp_A246 D-ribulose-phosphate 3-epimerase; IDP02542, isomer 93.93
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 93.72
3cu2_A237 Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib 93.33
2z6i_A332 Trans-2-enoyl-ACP reductase II; fatty acid synthes 93.23
3ovp_A228 Ribulose-phosphate 3-epimerase; iron binding, isom 93.18
3ble_A337 Citramalate synthase from leptospira interrogans; 93.02
3ctl_A231 D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p 92.73
1jcn_A514 Inosine monophosphate dehydrogenase I; IMPD, IMPDH 92.4
1h1y_A228 D-ribulose-5-phosphate 3-epimerase; oxidative pent 92.13
3r2g_A361 Inosine 5'-monophosphate dehydrogenase; structural 91.9
1tqj_A230 Ribulose-phosphate 3-epimerase; beta-alpha barrel 91.78
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 91.56
3bo9_A326 Putative nitroalkan dioxygenase; TM0800, structura 91.49
1p1x_A260 Deoxyribose-phosphate aldolase; alpha-beta barrel, 91.42
1w8s_A263 FBP aldolase, fructose-bisphosphate aldolase class 91.37
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 91.19
3igs_A232 N-acetylmannosamine-6-phosphate 2-epimerase 2; ene 90.84
1y0e_A223 Putative N-acetylmannosamine-6-phosphate 2-epimer; 90.8
4g9p_A406 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; 90.58
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 89.92
3bw2_A369 2-nitropropane dioxygenase; TIM barrel, oxidoreduc 89.77
1gte_A1025 Dihydropyrimidine dehydrogenase; electron transfer 89.73
3ajx_A207 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf 89.72
2fli_A220 Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr 89.61
2c6q_A351 GMP reductase 2; TIM barrel, metal-binding, NADP, 89.37
1vhc_A224 Putative KHG/KDPG aldolase; structural genomics, u 89.29
3qja_A272 IGPS, indole-3-glycerol phosphate synthase; struct 89.11
4e38_A232 Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho 89.0
1mxs_A225 KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a 88.61
1vcv_A226 Probable deoxyribose-phosphate aldolase; DERA, hyp 88.6
1rpx_A230 Protein (ribulose-phosphate 3-epimerase); chloropl 88.57
2yw3_A207 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox 88.54
1wbh_A214 KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} 88.5
3eeg_A325 2-isopropylmalate synthase; 11106D, beta barrel, P 88.02
1eep_A404 Inosine 5'-monophosphate dehydrogenase; alpha-beta 87.71
1yad_A221 Regulatory protein TENI; TIM barrel, transcription 87.69
2gjl_A328 Hypothetical protein PA1024; 2-nitropropane dioxyg 87.31
1geq_A248 Tryptophan synthase alpha-subunit; hyperthermophIl 87.13
1ub3_A220 Aldolase protein; schiff base, deoxyribose phospha 86.96
3jr2_A218 Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon 86.87
1n7k_A234 Deoxyribose-phosphate aldolase; A.pernix, tetramer 86.79
3rmj_A370 2-isopropylmalate synthase; LEUA, truncation, neis 86.63
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 86.03
3tsm_A272 IGPS, indole-3-glycerol phosphate synthase; struct 85.83
1ypf_A336 GMP reductase; GUAC, purines, pyrimidines, nucleos 85.76
1vzw_A244 Phosphoribosyl isomerase A; histidine biosynthesis 85.43
3q58_A229 N-acetylmannosamine-6-phosphate 2-epimerase; TIM b 85.4
3ewb_X293 2-isopropylmalate synthase; LEUA, structural genom 85.06
1vrd_A494 Inosine-5'-monophosphate dehydrogenase; TM1347, st 85.05
3vnd_A267 TSA, tryptophan synthase alpha chain; psychrophili 84.84
1h1y_A228 D-ribulose-5-phosphate 3-epimerase; oxidative pent 84.75
3oa3_A288 Aldolase; structural genomics, seattle structural 84.31
3nav_A271 Tryptophan synthase alpha chain; alpha subunit, st 84.25
2qjg_A273 Putative aldolase MJ0400; beta-alpha barrel, lyase 83.98
3tha_A252 Tryptophan synthase alpha chain; structural genomi 83.91
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 83.85
1thf_D253 HISF protein; thermophIle, TIM-barrel, histidine b 83.83
1me8_A503 Inosine-5'-monophosphate dehydrogenase; alpha beta 83.81
2qr6_A393 IMP dehydrogenase/GMP reductase; NP_599840.1, G re 83.76
1ka9_F252 Imidazole glycerol phosphtate synthase; riken stru 83.07
3r12_A260 Deoxyribose-phosphate aldolase; TIM beta/alpha-bar 83.05
1xi3_A215 Thiamine phosphate pyrophosphorylase; structural g 82.34
1mzh_A225 Deoxyribose-phosphate aldolase; alpha-beta barrel, 81.79
1tqx_A227 D-ribulose-5-phosphate 3-epimerase, putative; stru 81.69
3ngj_A239 Deoxyribose-phosphate aldolase; lyase, structural 81.5
3nvt_A385 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; 81.21
3s5o_A307 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; 80.07
1yxy_A234 Putative N-acetylmannosamine-6-phosphate 2-epimer; 80.01
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ... Back     alignment and structure
Probab=100.00  E-value=5.5e-108  Score=844.66  Aligned_cols=371  Identities=46%  Similarity=0.744  Sum_probs=357.1

Q ss_pred             eeecCCCccccCCCCCEEEEeCCeEEEEEEEEeCCCCeEEEEEccCeeecCCCccccCCccccCCCCChhCHHHHHhccc
Q 016513            2 ITMSYKKLPVDVKPGNTILCADGTITLTVLSCDPKSGTVRCRCENTAMLGERKNVNLPGVVVDLPTLTEKDKEDILRWGV   81 (388)
Q Consensus         2 i~~~~~~~~~~~~~gd~i~iddG~i~l~v~~~~~~~~~i~~~v~~~g~l~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l   81 (388)
                      |++||++|++++++||+||+|||+|.|+|+++  +++.+.|+|++||.|+++||||+||..+++|+||+||++|| +|++
T Consensus       176 i~v~y~~l~~~v~~Gd~IlidDG~i~l~V~~v--~~~~v~~~V~~gG~L~s~KgvNlPg~~l~lpalTekD~~dl-~f~~  252 (550)
T 3gr4_A          176 LWLDYKNICKVVEVGSKIYVDDGLISLQVKQK--GADFLVTEVENGGSLGSKKGVNLPGAAVDLPAVSEKDIQDL-KFGV  252 (550)
T ss_dssp             EEBSCTTHHHHCCTTCEEEETTTTEEEEEEEE--CSSEEEEEEEECEEECSSCBEECTTSCCCCCSSCHHHHHHH-HHHH
T ss_pred             EecchHHHHhhcCCCCEEEEeCCEEEEEEEEE--eCCEEEEEEEeCcEEcCCceeecCCCccCCCCCCHHHHHHH-HHHH
Confidence            78999999999999999999999999999977  78899999999999999999999999999999999999999 9999


Q ss_pred             cCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHHHHhhcCceeecCCcccCCCChhhHHHHHHHH
Q 016513           82 PNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETDSFMVARGDLGMEIPVEKIFLAQKMM  161 (388)
Q Consensus        82 ~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nldeI~~~~Dgi~igrgDLg~e~~~~~v~~~qk~i  161 (388)
                      ++|+|+|++|||++++|++++++++.+.|.++.|||||||++||+|+|||++++|||||||||||+|+|.++++.+||+|
T Consensus       253 ~~~vD~ia~SfVr~a~Dv~~~r~~L~~~g~~i~IIAKIE~~eav~nldeIl~~sDgImVaRGDLgvei~~e~vp~~Qk~i  332 (550)
T 3gr4_A          253 EQDVDMVFASFIRKASDVHEVRKVLGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIEIPAEKVFLAQKMM  332 (550)
T ss_dssp             HTTCSEEEETTCCSHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCGGGHHHHHHHH
T ss_pred             HcCCCEEEecCCCCHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHhCCEEEEccchhcccCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEeccccCCCCCHHHHHHHHHHHHHHHhcccchHH
Q 016513          162 IYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRA  241 (388)
Q Consensus       162 i~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls~eta~G~~P~~~v~~~~~i~~~aE~~~~~~~  241 (388)
                      +.+|+++|||||+||||||||++||+|||||++||||||+||+||+|||+|||.|+||+|||++|++||+++|+.++|..
T Consensus       333 I~~c~~agkpVi~ATQMLeSMi~~p~PTRAEvsDVanAvldG~DavMLSgETA~G~yPveaV~~M~~I~~~aE~~~~~~~  412 (550)
T 3gr4_A          333 IGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAIYHLQ  412 (550)
T ss_dssp             HHHHHHHTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHhCCCEEEEehhhHHhhcCCCccHHHHHHHHHHHHcCCcEEEEecCccCCCCHHHHHHHHHHHHHHHhhcchhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHhcCCCCCCchhHHHHHHHHHHHhcCCcEEEEEcCCchHHHHHHhhCCCCcEEEEEeccccCCCCCCcCCCcccc
Q 016513          242 VFKEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPA  321 (388)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~ia~aAv~~A~~l~A~aIvv~T~sG~tA~~vSk~RP~~pIiav~~p~~~tt~~~w~~~~~~~a  321 (388)
                      .|.++....+.+.+..+++|.+|+++|++++|++||+||.||+||+++|||||.|||||+       |      ++++++
T Consensus       413 ~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~TA~~iSr~RP~~PIia~-------T------~~~~~a  479 (550)
T 3gr4_A          413 LFEELRRLAPITSDPTEATAVGAVEASFKCCSGAIIVLTKSGRSAHQVARYRPRAPIIAV-------T------RNPQTA  479 (550)
T ss_dssp             HHHHHHHHSCCCCCHHHHHHHHHHHHHHHTTCSCEEEECSSSHHHHHHHTTCCSSCEEEE-------E------SCHHHH
T ss_pred             HHHhhhhccCCCCChHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHhhCCCCCEEEE-------c------CCHHHH
Confidence            777665544556688899999999999999999999999999999999999999999999       7      999999


Q ss_pred             cccccccccEEEEeCCCCcCCCccCHHHHHHHHHHHHHHcCCCCCCCEEEEEeec----CCCceEEEEEeC
Q 016513          322 RHSLIYRGLIPILAEGSAKATDAESTEVILEGALKSAIEKGLCSPGDAVVALHRI----GVASVIKICIVK  388 (388)
Q Consensus       322 R~l~l~~GV~P~l~~~~~~~~~~~~~e~~i~~a~~~~~~~g~~~~GD~vVvv~g~----g~tn~ikI~~v~  388 (388)
                      |||+|+|||+|++++....+.|..+.+.+++.|+++++++|++++||.||+++|+    |+||++||+.|+
T Consensus       480 R~l~L~~GV~P~~~~~~~~~~~~~~~d~~~~~a~~~~~~~g~~~~GD~vVv~~G~~~g~G~TN~lrv~~v~  550 (550)
T 3gr4_A          480 RQAHLYRGIFPVLCKDPVQEAWAEDVDLRVNFAMNVGKARGFFKKGDVVIVLTGWRPGSGFTNTMRVVPVP  550 (550)
T ss_dssp             HHGGGSTTEEEEECCSCCCSSHHHHHHHHHHHHHHHHHHTTSCCTTCEEEEEEESSSSTTCEEEEEEEECC
T ss_pred             HHHhccCCeEEEEecccccccccCCHHHHHHHHHHHHHHcCCCCCcCEEEEEeCCCCCCCCCeEEEEEEcC
Confidence            9999999999999987656678888999999999999999999999999999997    899999999885
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A* Back     alignment and structure
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7} Back     alignment and structure
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A Back     alignment and structure
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A* Back     alignment and structure
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A* Back     alignment and structure
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A Back     alignment and structure
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} Back     alignment and structure
>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum} Back     alignment and structure
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A Back     alignment and structure
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 Back     alignment and structure
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A Back     alignment and structure
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A Back     alignment and structure
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A Back     alignment and structure
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 Back     alignment and structure
>1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5 Back     alignment and structure
>2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A* Back     alignment and structure
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis} Back     alignment and structure
>1u5h_A CITE; TIM barrel, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC, lyase; 1.65A {Mycobacterium tuberculosis} SCOP: c.1.12.5 PDB: 1u5v_A* 1z6k_A Back     alignment and structure
>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Back     alignment and structure
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 2.44A {Ralstonia eutropha} Back     alignment and structure
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A Back     alignment and structure
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A Back     alignment and structure
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.24A {Burkholderia xenovorans} Back     alignment and structure
>3oyz_A Malate synthase; TIM barrel, transferase; HET: ACO; 1.95A {Haloferax volcanii} PDB: 3oyx_A* 3pug_A Back     alignment and structure
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A* Back     alignment and structure
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A Back     alignment and structure
>3cuz_A MSA, malate synthase A; TIM barrel, cytoplasm, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.04A {Escherichia coli} PDB: 3cv1_A 3cv2_A* Back     alignment and structure
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase, tricarboxylic acid cycle; 1.70A {Bacillus anthracis} Back     alignment and structure
>1p7t_A MSG, malate synthase G; TIM barrel, glyoxylate cycle, acetyl-COA, cysteine-sulfenic lyase; HET: ACO PG4; 1.95A {Escherichia coli str} SCOP: c.1.13.1 PDB: 1y8b_A 1d8c_A* 2jqx_A Back     alignment and structure
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A Back     alignment and structure
>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei} Back     alignment and structure
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* Back     alignment and structure
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2 Back     alignment and structure
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2 Back     alignment and structure
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase; 2.95A {Clostridium perfringens} Back     alignment and structure
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 Back     alignment and structure
>1jqo_A Phosphoenolpyruvate carboxylase; beta barrel, carbon dioxide fixation, lyase; 3.00A {Zea mays} SCOP: c.1.12.3 Back     alignment and structure
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A Back     alignment and structure
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Back     alignment and structure
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} Back     alignment and structure
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} Back     alignment and structure
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>1jqn_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta barrel, Mn2+ and DCDP complex, lyase; HET: DCO; 2.35A {Escherichia coli} SCOP: c.1.12.3 PDB: 1fiy_A* 1qb4_A Back     alignment and structure
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Back     alignment and structure
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* Back     alignment and structure
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Back     alignment and structure
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* Back     alignment and structure
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Back     alignment and structure
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Back     alignment and structure
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} Back     alignment and structure
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A Back     alignment and structure
>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 Back     alignment and structure
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Back     alignment and structure
>4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A* Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* Back     alignment and structure
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Back     alignment and structure
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Back     alignment and structure
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Back     alignment and structure
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* Back     alignment and structure
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Back     alignment and structure
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* Back     alignment and structure
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} Back     alignment and structure
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 Back     alignment and structure
>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 Back     alignment and structure
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Back     alignment and structure
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A Back     alignment and structure
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* Back     alignment and structure
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 Back     alignment and structure
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* Back     alignment and structure
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* Back     alignment and structure
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A Back     alignment and structure
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* Back     alignment and structure
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* Back     alignment and structure
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 Back     alignment and structure
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 Back     alignment and structure
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* Back     alignment and structure
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A Back     alignment and structure
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Back     alignment and structure
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Back     alignment and structure
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 Back     alignment and structure
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} Back     alignment and structure
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Back     alignment and structure
>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} Back     alignment and structure
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 Back     alignment and structure
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A Back     alignment and structure
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A Back     alignment and structure
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* Back     alignment and structure
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 Back     alignment and structure
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* Back     alignment and structure
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Back     alignment and structure
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 Back     alignment and structure
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Back     alignment and structure
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} Back     alignment and structure
>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* Back     alignment and structure
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A Back     alignment and structure
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 388
d2g50a2282 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-t 4e-63
d1pkla2258 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-ter 6e-63
d1a3xa2265 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-ter 3e-60
d1e0ta2246 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-ter 5e-57
d1a3xa3134 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal d 6e-27
d1pkla3141 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal d 3e-26
d2vgba3134 c.49.1.1 (A:440-573) Pyruvate kinase, C-terminal d 3e-25
d2g50a3135 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal d 6e-22
d2g50a1102 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit 3e-17
d1a3xa1101 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's 7e-16
d1e0ta3117 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal d 3e-13
d2vgba1102 b.58.1.1 (A:160-261) Pyruvate kinase (PK) {Human ( 3e-13
d1pkla199 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishman 9e-13
d1e0ta198 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escheric 1e-12
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  201 bits (513), Expect = 4e-63
 Identities = 101/168 (60%), Positives = 132/168 (78%)

Query: 77  LRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDDILRETD 136
           L++GV  ++DM+  SF+RK +D+  VRK+LG   KNI+++SK+EN EGV  FD+IL  +D
Sbjct: 115 LKFGVEQDVDMVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASD 174

Query: 137 SFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDV 196
             MVARGDLG+EIP EK+FLAQKM+I +CN  GKPV+ ATQMLESMIK PRPTRAE +DV
Sbjct: 175 GIMVARGDLGIEIPAEKVFLAQKMIIGRCNRAGKPVICATQMLESMIKKPRPTRAEGSDV 234

Query: 197 ANAVLDGTDCVMLSGESAAGAYPEIAVKIMRRICIEAESSLDYRAVFK 244
           ANAVLDG DC+MLSGE+A G YP  AV++   I  EAE+++ +R +F+
Sbjct: 235 ANAVLDGADCIMLSGETAKGDYPLEAVRMQHLIAREAEAAMFHRKLFE 282
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 258 Back     information, alignment and structure
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 265 Back     information, alignment and structure
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 246 Back     information, alignment and structure
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 Back     information, alignment and structure
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain {Leishmania mexicana [TaxId: 5665]} Length = 141 Back     information, alignment and structure
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 135 Back     information, alignment and structure
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 102 Back     information, alignment and structure
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 101 Back     information, alignment and structure
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 117 Back     information, alignment and structure
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 5665]} Length = 99 Back     information, alignment and structure
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]} Length = 98 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query388
d1a3xa2265 Pyruvate kinase, N-terminal domain {Baker's yeast 100.0
d1e0ta2246 Pyruvate kinase, N-terminal domain {Escherichia co 100.0
d1pkla2258 Pyruvate kinase, N-terminal domain {Leishmania mex 100.0
d2g50a2282 Pyruvate kinase, N-terminal domain {Rabbit (Orycto 100.0
d1pkla3141 Pyruvate kinase, C-terminal domain {Leishmania mex 100.0
d2vgba3134 Pyruvate kinase, C-terminal domain {Human (Homo sa 99.98
d2g50a3135 Pyruvate kinase, C-terminal domain {Rabbit (Orycto 99.98
d1a3xa3134 Pyruvate kinase, C-terminal domain {Baker's yeast 99.97
d1e0ta3117 Pyruvate kinase, C-terminal domain {Escherichia co 99.97
d1dxea_253 2-dehydro-3-deoxy-galactarate aldolase {Escherichi 99.79
d1izca_299 Macrophomate synthase {Macrophoma commelinae [TaxI 99.74
d1pkla199 Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 99.62
d1a3xa1101 Pyruvate kinase (PK) {Baker's yeast (Saccharomyces 99.61
d1e0ta198 Pyruvate kinase (PK) {Escherichia coli [TaxId: 562 99.6
d2vgba1102 Pyruvate kinase (PK) {Human (Homo sapiens) [TaxId: 99.59
d2g50a1102 Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculu 99.58
d1sgja_231 Citrate lyase, beta subunit {Deinococcus radiodura 99.12
d1u5ha_223 Citrate lyase, beta subunit {Mycobacterium tubercu 98.86
d1kbla1364 Pyruvate phosphate dikinase, C-terminal domain {Cl 97.91
d1vbga1356 Pyruvate phosphate dikinase, C-terminal domain {Ma 97.85
d1h6za1366 Pyruvate phosphate dikinase, C-terminal domain {Tr 97.33
d1zfja1365 Inosine monophosphate dehydrogenase (IMPDH) {Strep 95.46
d1vrda1330 Inosine monophosphate dehydrogenase (IMPDH) {Therm 95.27
d1t57a_186 Hypothetical protein MTH1675 {Methanobacterium the 94.71
d2cu0a1368 Inosine monophosphate dehydrogenase (IMPDH) {Pyroc 94.62
d1jr1a1378 Inosine monophosphate dehydrogenase (IMPDH) {Chine 94.14
d1eepa_388 Inosine monophosphate dehydrogenase (IMPDH) {Lyme 93.42
d1y0ea_222 Putative N-acetylmannosamine-6-phosphate 2-epimera 92.83
d1vp8a_190 Hypothetical protein AF0103 {Archaeoglobus fulgidu 92.57
d1jqna_880 Phosphoenolpyruvate carboxylase {Escherichia coli 89.64
d1jqoa_ 936 Phosphoenolpyruvate carboxylase {Escherichia coli 89.25
d1yxya1230 Putative N-acetylmannosamine-6-phosphate 2-epimera 88.08
d1n7ka_234 Deoxyribose-phosphate aldolase DeoC {Archaeon Aero 85.17
d1qopa_267 Trp synthase alpha-subunit {Salmonella typhimurium 84.66
d1p1xa_250 Deoxyribose-phosphate aldolase DeoC {Escherichia c 84.46
d1gtea2312 Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su 84.33
d1o0ya_251 Deoxyribose-phosphate aldolase DeoC {Thermotoga ma 83.81
d1pvna1362 Inosine monophosphate dehydrogenase (IMPDH) {Tritr 83.53
d1wbha1213 KDPG aldolase {Escherichia coli [TaxId: 562]} 81.83
d1geqa_248 Trp synthase alpha-subunit {Archaeon Pyrococcus fu 81.61
d1vhca_212 Hypothetical protein HI0047 {Haemophilus influenza 81.61
d2flia1217 D-ribulose-5-phosphate 3-epimerase {Streptococcus 81.02
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-59  Score=446.68  Aligned_cols=192  Identities=50%  Similarity=0.826  Sum_probs=182.9

Q ss_pred             cCCCccccCCccccCCCCChhCHHHHHhccccCCCCEEEeCCCCChhhHHHHHHHHccCCCCceEEEeecCHHhHhhHHH
Q 016513           51 GERKNVNLPGVVVDLPTLTEKDKEDILRWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKNIQLMSKVENQEGVVNFDD  130 (388)
Q Consensus        51 ~~~k~vn~p~~~~~~~~lt~~D~~di~~~~l~~g~d~v~~sfV~sa~dv~~v~~~l~~~~~~~~IiakIEt~~av~nlde  130 (388)
                      ..++.+.+ ...+..|.++++|..|| +|++++|+|+|++|||++++|++++|+++++.+.++.|||||||++|++|+|+
T Consensus        74 ~~G~~v~i-~~dl~~p~ltekD~~di-~~a~~~~vD~ialSFVrs~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~Nlde  151 (265)
T d1a3xa2          74 YPGRPLAI-ALDTKGPALSEKDKEDL-RFGVKNGVHMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDE  151 (265)
T ss_dssp             CCCSCCBC-EEECCCCSSCHHHHHHH-HHHHHTTCCEECCTTCCSHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHH
T ss_pred             ccCCceee-eccccchhcccchHHHH-HHhhhcccceEeeccCCCHHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHH
Confidence            34455544 45678899999999999 99999999999999999999999999999998899999999999999999999


Q ss_pred             HHhhcCceeecCCcccCCCChhhHHHHHHHHHHHHHHcCCCEEEhhhHHHHhhcCCCCChHHHHHHHHHHHcCCceeEec
Q 016513          131 ILRETDSFMVARGDLGMEIPVEKIFLAQKMMIYKCNLVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLS  210 (388)
Q Consensus       131 I~~~~Dgi~igrgDLg~e~~~~~v~~~qk~ii~~c~~~gkpvi~atq~lesM~~~~~ptraEv~dv~~av~~g~d~i~Ls  210 (388)
                      |++++|||||+|||||+++|++++|.+||+|+..|+++|||+|+||||||||+.+|.|||||++||+||++||+||+|||
T Consensus       152 Ii~~sDgimIaRGDLgvei~~e~vp~~Qk~Ii~~~~~~gkpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~vmLs  231 (265)
T d1a3xa2         152 ILKVTDGVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLS  231 (265)
T ss_dssp             HHHHCSEEEEEHHHHHHHSCHHHHHHHHHHHHHHHHHHTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEECCS
T ss_pred             HHhhcceeEEEccchhhhccHHHHHHHHHHHHHHHHHcCCcEEehhhhhhhhccCCCCcHHHHHHHHHHHHhCCCEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCHHHHHHHHHHHHHHHhcccchHHHHH
Q 016513          211 GESAAGAYPEIAVKIMRRICIEAESSLDYRAVFK  244 (388)
Q Consensus       211 ~eta~G~~P~~~v~~~~~i~~~aE~~~~~~~~~~  244 (388)
                      +|||+|+||+++|++|++||+++|+.++|...|+
T Consensus       232 ~ETA~G~~Pv~~V~~~~~I~~~~E~~~~~~~~~~  265 (265)
T d1a3xa2         232 GETAKGNYPINAVTTMAETAVIAEQAIAYLPNYD  265 (265)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHHHTTSSSCHHHHHH
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHhccchhhccC
Confidence            9999999999999999999999999999877663
>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1pkla3 c.49.1.1 (A:358-498) Pyruvate kinase, C-terminal domain {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d2g50a3 c.49.1.1 (A:396-530) Pyruvate kinase, C-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1a3xa3 c.49.1.1 (A:367-500) Pyruvate kinase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e0ta3 c.49.1.1 (A:354-470) Pyruvate kinase, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} Back     information, alignment and structure
>d1pkla1 b.58.1.1 (A:88-186) Pyruvate kinase (PK) {Leishmania mexicana [TaxId: 5665]} Back     information, alignment and structure
>d1a3xa1 b.58.1.1 (A:88-188) Pyruvate kinase (PK) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e0ta1 b.58.1.1 (A:70-167) Pyruvate kinase (PK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g50a1 b.58.1.1 (A:116-217) Pyruvate kinase (PK) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1sgja_ c.1.12.5 (A:) Citrate lyase, beta subunit {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1u5ha_ c.1.12.5 (A:) Citrate lyase, beta subunit {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1kbla1 c.1.12.2 (A:510-873) Pyruvate phosphate dikinase, C-terminal domain {Clostridium symbiosum [TaxId: 1512]} Back     information, alignment and structure
>d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase, C-terminal domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1h6za1 c.1.12.2 (A:538-903) Pyruvate phosphate dikinase, C-terminal domain {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1t57a_ c.49.1.2 (A:) Hypothetical protein MTH1675 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Back     information, alignment and structure
>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1jqna_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jqoa_ c.1.12.3 (A:) Phosphoenolpyruvate carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} Back     information, alignment and structure
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure