Citrus Sinensis ID: 016559

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQVSYYSLSDFILLGAPRLNSFIFY
cccccHHHHHHHHHHHHcccccccccccccEEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccEEEEccccccccccccccccccccEEEEcccccEEEEEEEccccccccccHHHHHccccccccccccccccccEEEcccHHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccEEccccccHHHHcccccccccccc
ccccHHHEEEEEEHHHcccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHccEEEEEEEccccHHHHHHHHEEEEcEEEEEEEEcccEEEEEcHHHHHHHcHHHHHccHHHccccccccHccccEEEEcccHHHHHHHHHHHHHccccccccccHHHHHHHHHcccccccccccHHHccccccHHHcccccEHHHHHHHHHHccHHccccccEEEEEEEEcccccccccccccccEEEEHccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccHHHHHHccccccccEEEc
MKLIPKLLTFVLIALLSIQSraaigsqstDQAYVTLLYGDEFLLGVRVLGKsirdtgsnkDMVVLVSDGVSDYSKKLLKADGWIVEKISllenpnqvrpkrfwGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANlkhserlnsgvmvvepsaaVFNDMMTKVntlgsytggdqgflnsyysdfpnahvfepnlplevvntrpvpnmerlstlynADVGLYMLANKWMVDESELHVIHYtlgplkpwdwwtswllkpVDVWQDIRVKLEeslpgtgggtnpkdefAVKVLFLLPLCALLFCCYhsflqtrdhfgSFCRTSLGDHIRHLYFKVRSVGSvaytgvsssstinsnhqvsyyslsdfillgaprlnsfify
MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKsirdtgsnkdmVVLVSDGVSDYSKKLLKADGWIVekisllenpnqvrpkrfWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLkhserlnsgvmVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEEslpgtgggtnpKDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQVSYYSLSDFILLGAPRLNSFIFY
MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVlfllplcallfccYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQVSYYSLSDFILLGAPRLNSFIFY
***IPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESL*********KDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQVSYYSLSDFILLGAPRLNSFIF*
***IPKLLTFVLIAL****************AYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIR******************EFAVKVLFLLPLCALLFCCYHS*************TSLGDHIRHLYFKVRSVGSVAY**************VSYYSLSDFILLGAPRLNSFIFY
MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQVSYYSLSDFILLGAPRLNSFIFY
MKLIPKLLTFVLIALLSIQS*******STDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQVSYYSLSDFILLGAPRLNSFIFY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVLFLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNHQVSYYSLSDFILLGAPRLNSFIFY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
Q8GWB7 537 Putative glucuronosyltran yes no 0.912 0.657 0.772 1e-151
F4HZC3566 Putative UDP-glucuronate: no no 0.410 0.280 0.425 2e-29
Q9LSB1659 UDP-glucuronate:xylan alp no no 0.454 0.267 0.348 7e-29
Q8W4A7618 Putative UDP-glucuronate: no no 0.540 0.338 0.333 1e-28
F4JMI5494 Putative glucuronosyltran no no 0.664 0.520 0.315 3e-25
Q9FZ37557 Putative UDP-glucuronate: no no 0.410 0.285 0.395 3e-25
Q8VZP6497 Putative glucuronosyltran no no 0.661 0.515 0.305 9e-25
Q9R062333 Glycogenin-1 OS=Mus muscu yes no 0.550 0.639 0.317 3e-23
P46976350 Glycogenin-1 OS=Homo sapi yes no 0.545 0.602 0.315 8e-23
Q8GWW4596 UDP-glucuronate:xylan alp no no 0.534 0.347 0.294 1e-22
>sp|Q8GWB7|GUX6_ARATH Putative glucuronosyltransferase PGSIP6 OS=Arabidopsis thaliana GN=PGSIP6 PE=2 SV=1 Back     alignment and function desciption
 Score =  534 bits (1376), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 275/356 (77%), Positives = 303/356 (85%), Gaps = 3/356 (0%)

Query: 8   LTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVS 67
           L  +L+AL+SIQ   + GS+S+  AYVTLLYGDEFLLGVRVLGKSIRDTGS KDMV LVS
Sbjct: 8   LWVLLLALVSIQLNGSFGSESSKVAYVTLLYGDEFLLGVRVLGKSIRDTGSTKDMVALVS 67

Query: 68  DGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADT 127
           DGVSDYSKKLLKADGW VEKISLL NPNQV P RFWGVYTKLKIFNMT+YKKVVYLDADT
Sbjct: 68  DGVSDYSKKLLKADGWKVEKISLLANPNQVHPTRFWGVYTKLKIFNMTDYKKVVYLDADT 127

Query: 128 IVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFL 187
           IV+KNIEDLFKC KFCANLKHSERLNSGVMVVEPS A+FNDMM KV TL SYTGGDQGFL
Sbjct: 128 IVVKNIEDLFKCSKFCANLKHSERLNSGVMVVEPSEALFNDMMRKVKTLSSYTGGDQGFL 187

Query: 188 NSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVI 247
           NSYY DFPNA VF+P++  EV+ TRPVP MERLSTLYNADVGLYMLANKWMVD+S+LHVI
Sbjct: 188 NSYYPDFPNARVFDPSVTPEVLKTRPVPAMERLSTLYNADVGLYMLANKWMVDDSKLHVI 247

Query: 248 HYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVLFLLPLCA 307
           HYTLGPLKPWDWWT+WL+KPVD W  IRVKLEE+LPGTGGG+N  DE  VK LFLLPLCA
Sbjct: 248 HYTLGPLKPWDWWTAWLVKPVDAWHSIRVKLEETLPGTGGGSNQHDELVVKFLFLLPLCA 307

Query: 308 LLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNH 363
           LLFC Y S +Q R+  GS C +S  + IR+LY+KVRS G++ Y GVS+ S     H
Sbjct: 308 LLFCIYRS-IQGRE--GSLCWSSFSNQIRYLYYKVRSNGTLGYGGVSTMSPSYQPH 360

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: -
>sp|F4HZC3|GUX5_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 5 OS=Arabidopsis thaliana GN=GUX5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LSB1|GUX1_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 1 OS=Arabidopsis thaliana GN=GUX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8W4A7|GUX3_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 3 OS=Arabidopsis thaliana GN=GUX3 PE=2 SV=1 Back     alignment and function description
>sp|F4JMI5|GUX7_ARATH Putative glucuronosyltransferase PGSIP7 OS=Arabidopsis thaliana GN=PGSIP7 PE=3 SV=1 Back     alignment and function description
>sp|Q9FZ37|GUX4_ARATH Putative UDP-glucuronate:xylan alpha-glucuronosyltransferase 4 OS=Arabidopsis thaliana GN=GUX4 PE=3 SV=1 Back     alignment and function description
>sp|Q8VZP6|GUX8_ARATH Putative glucuronosyltransferase PGSIP8 OS=Arabidopsis thaliana GN=PGSIP8 PE=2 SV=1 Back     alignment and function description
>sp|Q9R062|GLYG_MOUSE Glycogenin-1 OS=Mus musculus GN=Gyg1 PE=2 SV=3 Back     alignment and function description
>sp|P46976|GLYG_HUMAN Glycogenin-1 OS=Homo sapiens GN=GYG1 PE=1 SV=4 Back     alignment and function description
>sp|Q8GWW4|GUX2_ARATH UDP-glucuronate:xylan alpha-glucuronosyltransferase 2 OS=Arabidopsis thaliana GN=GUX2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
356504117 573 PREDICTED: uncharacterized protein LOC10 0.940 0.635 0.756 1e-166
356576725 541 PREDICTED: uncharacterized protein LOC10 0.932 0.667 0.775 1e-166
356573128 549 PREDICTED: uncharacterized protein LOC10 0.894 0.630 0.778 1e-164
357441423 541 Glycogenin-1 [Medicago truncatula] gi|35 0.919 0.658 0.767 1e-163
449470208 545 PREDICTED: putative glucuronosyltransfer 0.865 0.614 0.794 1e-161
224123610 546 predicted protein [Populus trichocarpa] 0.935 0.663 0.786 1e-158
255561991 776 glycogenin, putative [Ricinus communis] 0.883 0.440 0.771 1e-157
388503378 535 unknown [Lotus japonicus] 0.888 0.642 0.748 1e-155
225453032 546 PREDICTED: uncharacterized protein LOC10 0.919 0.652 0.789 1e-153
167600648 546 hypothetical protein 46C02.16 [Coffea ca 0.850 0.602 0.808 1e-150
>gi|356504117|ref|XP_003520845.1| PREDICTED: uncharacterized protein LOC100800761 [Glycine max] Back     alignment and taxonomy information
 Score =  589 bits (1519), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 276/365 (75%), Positives = 317/365 (86%), Gaps = 1/365 (0%)

Query: 1   MKLIPKLLTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNK 60
           + L+   + F + +L       A  ++ TD+AYVTLLYGDEFLLGVRVLGKSIR+TGSNK
Sbjct: 29  IDLLSIFVKFSVESLCGPNGCVASKTKKTDEAYVTLLYGDEFLLGVRVLGKSIRNTGSNK 88

Query: 61  DMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKV 120
           DMVVLVSDGVSDY+K LL+ADGWIVE ISLL NPN+VRPKRFWGVYTKLKIFNMT+YKKV
Sbjct: 89  DMVVLVSDGVSDYAKSLLRADGWIVEMISLLANPNRVRPKRFWGVYTKLKIFNMTDYKKV 148

Query: 121 VYLDADTIVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYT 180
           VYLDADTIV++NI+DLFKC KFCANLKHSERLNSGVMVVEPSA +FNDMM+K+ T  SYT
Sbjct: 149 VYLDADTIVVRNIDDLFKCGKFCANLKHSERLNSGVMVVEPSATLFNDMMSKIKTTASYT 208

Query: 181 GGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVD 240
           GGDQGFLNSYYS FPNAHVFEPNL  EV+++RP+P MERLSTLYNADVGLYMLANKWMVD
Sbjct: 209 GGDQGFLNSYYSGFPNAHVFEPNLSSEVLSSRPIPEMERLSTLYNADVGLYMLANKWMVD 268

Query: 241 ESELHVIHYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVL 300
           E+EL VIHYTLGPLKPWDWWTSWLLKPVDVWQD+R +L+ESLPGTGGG NPKD F VK L
Sbjct: 269 ENELRVIHYTLGPLKPWDWWTSWLLKPVDVWQDVREQLDESLPGTGGGQNPKDSFLVKFL 328

Query: 301 FLLPLCALLFCCYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTIN 360
           FLLP CALLFCCYHSF + + +F + CR+SL D +RHLY+++RS G +AYT +S+S+T N
Sbjct: 329 FLLPFCALLFCCYHSFTKNQGYFSTLCRSSLCDQVRHLYYRIRSNGPLAYTSISASTT-N 387

Query: 361 SNHQV 365
           S HQ+
Sbjct: 388 SVHQL 392

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356576725|ref|XP_003556480.1| PREDICTED: uncharacterized protein LOC100813990 [Glycine max] Back     alignment and taxonomy information
>gi|356573128|ref|XP_003554716.1| PREDICTED: uncharacterized protein LOC100810905 [Glycine max] Back     alignment and taxonomy information
>gi|357441423|ref|XP_003590989.1| Glycogenin-1 [Medicago truncatula] gi|355480037|gb|AES61240.1| Glycogenin-1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449470208|ref|XP_004152810.1| PREDICTED: putative glucuronosyltransferase PGSIP6-like [Cucumis sativus] gi|449477740|ref|XP_004155109.1| PREDICTED: putative glucuronosyltransferase PGSIP6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224123610|ref|XP_002319122.1| predicted protein [Populus trichocarpa] gi|222857498|gb|EEE95045.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255561991|ref|XP_002522004.1| glycogenin, putative [Ricinus communis] gi|223538808|gb|EEF40408.1| glycogenin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388503378|gb|AFK39755.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|225453032|ref|XP_002266145.1| PREDICTED: uncharacterized protein LOC100248394 [Vitis vinifera] gi|302143640|emb|CBI22393.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|167600648|gb|ABZ89190.1| hypothetical protein 46C02.16 [Coffea canephora] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
TAIR|locus:2146173 537 PGSIP6 "plant glycogenin-like 0.912 0.657 0.738 5.6e-139
WB|WBGene00011684449 T10B10.8 [Caenorhabditis elega 0.627 0.541 0.364 8.4e-42
TAIR|locus:2036024566 PGSIP5 "plant glycogenin-like 0.410 0.280 0.425 2.2e-30
TAIR|locus:2196020618 PGSIP2 "plant glycogenin-like 0.571 0.357 0.329 6.9e-30
TAIR|locus:2094014659 PGSIP1 "plant glycogenin-like 0.452 0.265 0.351 1.1e-28
ZFIN|ZDB-GENE-040426-2910329 gyg1a "glycogenin 1a" [Danio r 0.452 0.531 0.360 1.4e-27
UNIPROTKB|P46976350 GYG1 "Glycogenin-1" [Homo sapi 0.454 0.502 0.353 5.8e-27
TAIR|locus:2130854494 PGSIP8 "AT4G16600" [Arabidopsi 0.617 0.483 0.335 6.6e-27
UNIPROTKB|F1SKC4331 GYG1 "Uncharacterized protein" 0.452 0.528 0.344 7.4e-27
UNIPROTKB|F1PVC0333 GYG1 "Uncharacterized protein" 0.454 0.528 0.347 1.5e-26
TAIR|locus:2146173 PGSIP6 "plant glycogenin-like starch initiation protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1360 (483.8 bits), Expect = 5.6e-139, P = 5.6e-139
 Identities = 263/356 (73%), Positives = 291/356 (81%)

Query:     8 LTFVLIALLSIQSRAAIGSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVS 67
             L  +L+AL+SIQ   + GS+S+  AYVTLLYGDEFLLGVRVLGKSIRDTGS KDMV LVS
Sbjct:     8 LWVLLLALVSIQLNGSFGSESSKVAYVTLLYGDEFLLGVRVLGKSIRDTGSTKDMVALVS 67

Query:    68 DGVSDYSKKLLKADGWIVEKISLLENPNQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADT 127
             DGVSDYSKKLLKADGW VEKISLL NPNQV P RFWGVYTKLKIFNMT+YKKVVYLDADT
Sbjct:    68 DGVSDYSKKLLKADGWKVEKISLLANPNQVHPTRFWGVYTKLKIFNMTDYKKVVYLDADT 127

Query:   128 IVIKNIEDLFKCRKFCANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFL 187
             IV+KNIEDLFKC KFCANLKHSERLNSGVMVVEPS A+FNDMM KV TL SYTGGDQGFL
Sbjct:   128 IVVKNIEDLFKCSKFCANLKHSERLNSGVMVVEPSEALFNDMMRKVKTLSSYTGGDQGFL 187

Query:   188 NSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVI 247
             NSYY DFPNA VF+P++  EV+ TRPVP MERLSTLYNADVGLYMLANKWMVD+S+LHVI
Sbjct:   188 NSYYPDFPNARVFDPSVTPEVLKTRPVPAMERLSTLYNADVGLYMLANKWMVDDSKLHVI 247

Query:   248 HYTLGPLKPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVXXXXXXXX 307
             HYTLGPLKPWDWWT+WL+KPVD W  IRVKLEE+LPGTGGG+N  DE  VK         
Sbjct:   248 HYTLGPLKPWDWWTAWLVKPVDAWHSIRVKLEETLPGTGGGSNQHDELVVKFLFLLPLCA 307

Query:   308 XXXXXYHSFLQTRDHFGSFCRTSLGDHIRHLYFKVRSVGSVAYTGVSSSSTINSNH 363
                  Y S +Q R+  GS C +S  + IR+LY+KVRS G++ Y GVS+ S     H
Sbjct:   308 LLFCIYRS-IQGRE--GSLCWSSFSNQIRYLYYKVRSNGTLGYGGVSTMSPSYQPH 360
GO:0005576 "extracellular region" evidence=ISM
GO:0009058 "biosynthetic process" evidence=ISS
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0016758 "transferase activity, transferring hexosyl groups" evidence=ISS
GO:0016020 "membrane" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
WB|WBGene00011684 T10B10.8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2036024 PGSIP5 "plant glycogenin-like starch initiation protein 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196020 PGSIP2 "plant glycogenin-like starch initiation protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094014 PGSIP1 "plant glycogenin-like starch initiation protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2910 gyg1a "glycogenin 1a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P46976 GYG1 "Glycogenin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2130854 PGSIP8 "AT4G16600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SKC4 GYG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PVC0 GYG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GWB7GUX6_ARATH2, ., 4, ., 1, ., -0.77240.91210.6573yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!
4th Layer2.4.1.186LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00130489
hypothetical protein (547 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
cd02537240 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 2e-83
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 4e-24
PLN00176333 PLN00176, PLN00176, galactinol synthase 2e-17
cd06914278 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that be 2e-16
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 6e-13
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 3e-10
COG5597368 COG5597, COG5597, Alpha-N-acetylglucosamine transf 2e-07
pfam11051263 pfam11051, Mannosyl_trans3, Mannosyltransferase pu 5e-04
>gnl|CDD|133018 cd02537, GT8_Glycogenin, Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information 
 Score =  253 bits (649), Expect = 2e-83
 Identities = 97/258 (37%), Positives = 136/258 (52%), Gaps = 34/258 (13%)

Query: 31  QAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISL 90
           +AYVTLL  D++L G  VLG S+R  GS+ D+VVLV+ GVS+ S++ L+  GWIV ++  
Sbjct: 1   EAYVTLLTNDDYLPGALVLGYSLRKVGSSYDLVVLVTPGVSEESREALEEVGWIVREVEP 60

Query: 91  LENPNQVR---PKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRK-FCANL 146
           ++ P+        RF   YTKL+++N+T Y KVV+LDADT+V++NI++LF     F A  
Sbjct: 61  IDPPDSANLLKRPRFKDTYTKLRLWNLTEYDKVVFLDADTLVLRNIDELFDLPGEFAAAP 120

Query: 147 KH--SERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFEPNL 204
                +  NSGV V++PS   FND++  +    S+ GGDQG LNSY+SD           
Sbjct: 121 DCGWPDLFNSGVFVLKPSEETFNDLLDALQDTPSFDGGDQGLLNSYFSDRGIWK------ 174

Query: 205 PLEVVNTRPVPNMERLSTLYNADVGLYMLANKWMVDESELHVIHYTLGPLKPWDWWTSWL 264
                         RL   YNA   L  L  + +    E+ V+H+  G  KPW WW    
Sbjct: 175 --------------RLPFTYNALKPLRYLHPEALWFGDEIKVVHFI-GGDKPWSWWRDPE 219

Query: 265 LK-------PVDVWQDIR 275
            K           W DI 
Sbjct: 220 TKEKDDYNELHQWWWDIY 237

Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases. Length = 240
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|215090 PLN00176, PLN00176, galactinol synthase Back     alignment and domain information
>gnl|CDD|133064 cd06914, GT8_GNT1, GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|227884 COG5597, COG5597, Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>gnl|CDD|220956 pfam11051, Mannosyl_trans3, Mannosyltransferase putative Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
cd06914278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 100.0
PLN00176333 galactinol synthase 100.0
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 100.0
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 100.0
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.97
PRK15171334 lipopolysaccharide 1,3-galactosyltransferase; Prov 99.97
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.97
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 99.95
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.95
COG1442325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.95
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.89
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.88
PLN02523559 galacturonosyltransferase 99.86
PLN02718603 Probable galacturonosyltransferase 99.85
PLN02659534 Probable galacturonosyltransferase 99.8
PLN02867535 Probable galacturonosyltransferase 99.8
PLN02870533 Probable galacturonosyltransferase 99.77
PLN02769629 Probable galacturonosyltransferase 99.77
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 99.77
PLN02829639 Probable galacturonosyltransferase 99.73
PLN02742534 Probable galacturonosyltransferase 99.72
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 99.68
KOG1950369 consensus Glycosyl transferase, family 8 - glycoge 98.65
PF11051271 Mannosyl_trans3: Mannosyltransferase putative; Int 98.26
PF03407212 Nucleotid_trans: Nucleotide-diphospho-sugar transf 97.95
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 95.87
KOG1928409 consensus Alpha-1,4-N-acetylglucosaminyltransferas 93.1
PLN03182429 xyloglucan 6-xylosyltransferase; Provisional 91.3
cd06439251 CESA_like_1 CESA_like_1 is a member of the cellulo 84.68
cd02515271 Glyco_transf_6 Glycosyltransferase family 6 compri 84.59
TIGR03111439 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR0 83.67
PF07801142 DUF1647: Protein of unknown function (DUF1647); In 83.01
PF05637239 Glyco_transf_34: galactosyl transferase GMA12/MNN1 81.82
PRK11204420 N-glycosyltransferase; Provisional 81.19
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information 
Probab=100.00  E-value=1.5e-44  Score=349.36  Aligned_cols=246  Identities=25%  Similarity=0.369  Sum_probs=190.9

Q ss_pred             EEEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHH-------HHHhcCcEEEEeeeeCCCCCCCCcchh
Q 016559           31 QAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKK-------LLKADGWIVEKISLLENPNQVRPKRFW  103 (387)
Q Consensus        31 ~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~-------~L~~~g~~v~~I~~i~~p~~~~~~~~~  103 (387)
                      +||||++||++|+|||+|+++||++++|++|+|+|+++++++....       .+.+.++.++.++.+..+.  ...+|.
T Consensus         1 fAYvtl~Tn~~YL~gAlvL~~sLr~~gs~~dlVvLvt~~~~~~~~~~~~~~~~~l~~~~~~v~~v~~~~~~~--~~~~~~   78 (278)
T cd06914           1 YAYVNYATNADYLCNALILFEQLRRLGSKAKLVLLVPETLLDRNLDDFVRRDLLLARDKVIVKLIPVIIASG--GDAYWA   78 (278)
T ss_pred             CeEEEEecChhHHHHHHHHHHHHHHhCCCCCEEEEECCCCChhhhhhHHHHHHHhhccCcEEEEcCcccCCC--CCccHH
Confidence            6999999999999999999999999999999999999999875432       2334577787777655443  335677


Q ss_pred             hhhhhhhccccccccEEEEEcCCeeecCCchHHhcCh-hh-hhccCCCCcccceEEEEeCCHHHHHHHHHHHHhcCC--C
Q 016559          104 GVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCR-KF-CANLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGS--Y  179 (387)
Q Consensus       104 ~sy~KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~l~-~~-~Aa~~~~~yfNSGVmvinps~~~~~~ile~~~~~~~--~  179 (387)
                      .+|+||.+|++++||||||||||++|++||||||+++ .. .|+.....|||||||||+|+...|+++++.+.+..+  .
T Consensus        79 ~~~tKl~~~~l~~y~kvlyLDaD~l~~~~ideLf~~~~~~~~Aap~~~~~FNSGvmvi~ps~~~~~~l~~~~~~~~~~~~  158 (278)
T cd06914          79 KSLTKLRAFNQTEYDRIIYFDSDSIIRHPMDELFFLPNYIKFAAPRAYWKFASHLMVIKPSKEAFKELMTEILPAYLNKK  158 (278)
T ss_pred             HHHHHHHhccccceeeEEEecCChhhhcChHHHhcCCcccceeeecCcceecceeEEEeCCHHHHHHHHHHHHHhcccCC
Confidence            7899999999999999999999999999999999998 32 233333459999999999999999999999887533  3


Q ss_pred             CCChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccccccc-ccccccccc--------c-----ccccccCC--CC
Q 016559          180 TGGDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTL-YNADVGLYM--------L-----ANKWMVDE--SE  243 (387)
Q Consensus       180 ~~~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~-YN~~~~~y~--------~-----~~~w~~~~--~~  243 (387)
                      .++|||+||.+|.++.+.  |.|             ++..||.+ ||...|.+.        .     .++|+++.  ++
T Consensus       159 ~~~DQdiLN~~~~~~~~~--~~~-------------~~~~Lp~~~y~llt~~~r~~~~~~~l~~~~~~~~~w~~~~~~~~  223 (278)
T cd06914         159 NEYDMDLINEEFYNSKQL--FKP-------------SVLVLPHRQYGLLTGEFREKLHKSFLSNAQHLYEKWDPDDVFKE  223 (278)
T ss_pred             CCCChHHHHHHHhCCccc--cCc-------------ceEEcCccccccCChhhcccCHHHhhccccccccccCHHHHHhh
Confidence            578999999999997321  222             35566654 666655321        1     34676543  89


Q ss_pred             cEEEEeeCCCC-CCCCcccccCCCchhHHHHHHHHhhhcCCCCCCCCCCcchhhhhhh
Q 016559          244 LHVIHYTLGPL-KPWDWWTSWLLKPVDVWQDIRVKLEESLPGTGGGTNPKDEFAVKVL  300 (387)
Q Consensus       244 ~~IIHft~gp~-KPW~~w~~~~~~~~~~W~~~~~~l~~~~~g~~~~~~~~~~~~~~~l  300 (387)
                      +++||||+||. |||..++.      +.+.+..+.|. ..++.+++++|++|.+|+.+
T Consensus       224 ~k~vHFSd~Pl~KPW~~~~~------~~~~~~~~~~~-~~~~~~~~~~c~~~~iW~~~  274 (278)
T cd06914         224 SKVIHFSDSPLPKPWNYNNL------EDIYCIEKIYC-KMVKPRLEDDCRACDLWNSL  274 (278)
T ss_pred             CeEEEecCCCCCCCcCCcCH------HHHHHhCCccc-cCCCCCccCcchHHHHHHHH
Confidence            99999999997 99999986      34444444432 12345567799999999988

N-acetylglucosaminyltransferase is a fungal enzyme that catalyzes the addition of N-acetyl-D-glucosamine to mannotetraose side chains by an alpha 1-2 linkage during the synthesis of mannan. The N-acetyl-D-glucosamine moiety in mannan plays a role in the attachment of mannan to asparagine residues in proteins. The mannotetraose and its N-acetyl-D-glucosamine derivative side chains of mannan are the principle immunochemical determinants on the cell surface. N-acetylglucosaminyltransferase is a member of glycosyltransferase family 8, which are, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed, retaining glycosyltransferases.
>PLN00176 galactinol synthase Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information
>KOG1950 consensus Glycosyl transferase, family 8 - glycogenin [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose Back     alignment and domain information
>PF03407 Nucleotid_trans: Nucleotide-diphospho-sugar transferase; InterPro: IPR005069 Proteins in this family have been been predicted to be nucleotide-diphospho-sugar transferases [] Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG1928 consensus Alpha-1,4-N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional Back     alignment and domain information
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily Back     alignment and domain information
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens Back     alignment and domain information
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111 Back     alignment and domain information
>PF07801 DUF1647: Protein of unknown function (DUF1647); InterPro: IPR012444 This entry consists of hypothetical proteins of unknown function Back     alignment and domain information
>PF05637 Glyco_transf_34: galactosyl transferase GMA12/MNN10 family; InterPro: IPR008630 This family contains a number of glycosyltransferase enzymes that contain a DXD motif Back     alignment and domain information
>PRK11204 N-glycosyltransferase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1zcy_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 4e-24
3u2t_A284 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 4e-24
3t7m_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) Comp 5e-24
3rmw_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m 5e-24
1zct_A290 Structure Of Glycogenin Truncated At Residue 270 In 6e-24
3v90_A291 Structure Of T82m Glycogenin Mutant Truncated At Re 6e-24
1zcv_A353 Apo Form Of A Mutant Of Glycogenin In Which Asp159 6e-24
3usq_A291 Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED 6e-24
3v8y_A291 Structure Of Apo-Glycogenin Truncated At Residue 27 6e-24
1ll0_A339 Crystal Structure Of Rabbit Muscle Glycogenin Lengt 7e-24
3q4s_A263 Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo 1e-23
3usr_A291 Structure Of Y194f Glycogenin Mutant Truncated At R 1e-23
1zcu_A353 Apo Form Of The 162s Mutant Of Glycogenin Length = 4e-23
1ll2_A333 Crystal Structure Of Rabbit Muscle Glycogenin Compl 6e-23
>pdb|1ZCY|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Ser Length = 353 Back     alignment and structure 
Iteration: 1

 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 128/245 (52%), Gaps = 30/245 (12%)
Query: 25  GSQSTDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWI 84
           GS  TDQA+VTL   D +  G  VLG S++   +++ + VL +  VSD  +K L+     
Sbjct: 18  GSHMTDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDE 77
Query: 85  VEKISLLENPNQV------RPKRFWGV-YTKLKIFNMTNYKKVVYLDADTIVIKNIEDLF 137
           V  + +L++ +        RP+   GV  TKL  +++T Y K V++DADT+V+ NI+DLF
Sbjct: 78  VITVDILDSGDSAHLTLMKRPEL--GVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLF 135
Query: 138 KCRKFCA--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFP 195
           +  +  A  +    +  NSGV V +PS   +N ++   +  GS++GGDQG LN++++ + 
Sbjct: 136 EREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFSGGDQGLLNTFFNSWA 195
Query: 196 NAHVFEPNLPLEVVNTRPVPNMERLSTLYN-ADVGLYMLANKWMVDESELHVIHYTLGPL 254
              +   +LP                 +YN + + +Y     +    +   V+H+ LG  
Sbjct: 196 TTDI-RKHLPF----------------IYNLSSISIYSYLPAFKAFGANAKVVHF-LGQT 237
Query: 255 KPWDW 259
           KPW++
Sbjct: 238 KPWNY 242
>pdb|3U2T|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese Length = 284 Back     alignment and structure
>pdb|3T7M|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) Complexed With Manganese And Udp, In A Triclinic Closed Form Length = 263 Back     alignment and structure
>pdb|3RMW|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1) T83m Mutant Complexed With Manganese And Udp-Glucose Length = 263 Back     alignment and structure
>pdb|1ZCT|A Chain A, Structure Of Glycogenin Truncated At Residue 270 In A Complex With Udp Length = 290 Back     alignment and structure
>pdb|3V90|A Chain A, Structure Of T82m Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCV|A Chain A, Apo Form Of A Mutant Of Glycogenin In Which Asp159 Is Replaced By Asn Length = 353 Back     alignment and structure
>pdb|3USQ|A Chain A, Structure Of D159sY194F GLYCOGENIN MUTANT TRUNCATED AT RESIDUE 270 Length = 291 Back     alignment and structure
>pdb|3V8Y|A Chain A, Structure Of Apo-Glycogenin Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1LL0|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Length = 339 Back     alignment and structure
>pdb|3Q4S|A Chain A, Crystal Structure Of Human Glycogenin-1 (Gyg1), Apo Form Length = 263 Back     alignment and structure
>pdb|3USR|A Chain A, Structure Of Y194f Glycogenin Mutant Truncated At Residue 270 Length = 291 Back     alignment and structure
>pdb|1ZCU|A Chain A, Apo Form Of The 162s Mutant Of Glycogenin Length = 353 Back     alignment and structure
>pdb|1LL2|A Chain A, Crystal Structure Of Rabbit Muscle Glycogenin Complexed With Udp- Glucose And Manganese Length = 333 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 5e-53
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 2e-51
3tzt_A276 Glycosyl transferase family 8; structural genomics 1e-11
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Length = 333 Back     alignment and structure
 Score =  178 bits (452), Expect = 5e-53
 Identities = 69/249 (27%), Positives = 118/249 (47%), Gaps = 26/249 (10%)

Query: 29  TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKI 88
           TDQA+VTL   D +  G  VLG S++   +++ + VL +  VSD  +K L+     V  +
Sbjct: 2   TDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITV 61

Query: 89  SLLENPNQVRPKRF-----WGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFC 143
            +L++ +                TKL  +++T Y K V++DADT+V+ NI+DLF+  +  
Sbjct: 62  DILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELS 121

Query: 144 A--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFE 201
           A  +    +  NSGV V +PS   +N ++   +  GS+ GGDQG LN++++ +       
Sbjct: 122 AAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATT---- 177

Query: 202 PNLPLEVVNTRPVPNMERLSTLYNAD-VGLYMLANKWMVDESELHVIHYTLGPLKPWDWW 260
                           + L  +YN   + +Y     +    +   V+H+  G  KPW++ 
Sbjct: 178 -------------DIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFL-GQTKPWNYT 223

Query: 261 TSWLLKPVD 269
                K V 
Sbjct: 224 YDTKTKSVR 232
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Length = 263 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 100.0
1ll2_A333 Glycogenin-1; protein-substrate complex, beta-alph 100.0
3tzt_A276 Glycosyl transferase family 8; structural genomics 99.97
1g9r_A311 Glycosyl transferase; alpha-beta structure; HET: U 99.97
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure
Probab=100.00  E-value=2.1e-43  Score=338.92  Aligned_cols=214  Identities=33%  Similarity=0.557  Sum_probs=181.8

Q ss_pred             CCEEEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCC-----CCcchh
Q 016559           29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQV-----RPKRFW  103 (387)
Q Consensus        29 ~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~-----~~~~~~  103 (387)
                      +++||||+++|++|+++++|+++||+++|+++++++|++++++++.+++|++.|.+++.|+.+..+...     ...++.
T Consensus         3 ~~~AyvTl~td~~Yl~ga~vL~~SL~~~~s~~~lvvLvt~~vs~~~~~~L~~~~~~vi~V~~l~~~~~~~~~~~~rp~~~   82 (263)
T 3u2u_A            3 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTLMKRPELG   82 (263)
T ss_dssp             TTEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHSSEEEECCCCCCCCHHHHHHTTCTTGG
T ss_pred             cceEEEEEEECHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCHHHHHHHHHcCCeEEEeeecCCcchhhhhhhcCcchh
Confidence            589999999999999999999999999999999999999999999999999999999888877654210     122356


Q ss_pred             hhhhhhhccccccccEEEEEcCCeeecCCchHHhcChhhhhcc--CCCCcccceEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 016559          104 GVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANL--KHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTG  181 (387)
Q Consensus       104 ~sy~KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~l~~~~Aa~--~~~~yfNSGVmvinps~~~~~~ile~~~~~~~~~~  181 (387)
                      .+|+|+.+|++++||||||||+|++|++||||||+++.++|+.  +++.|||||||||+|++.+++++++.+.+.+++.+
T Consensus        83 ~~~~kl~~~~l~~~~~vlylD~D~~v~~~~~~Lf~~~~~aA~~d~~~~~~fNsGv~li~p~~~~~~~l~~~~~~~~~~~~  162 (263)
T 3u2u_A           83 VTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHLASEQGSFDG  162 (263)
T ss_dssp             GGGGGGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECTTSTTSEEEEEEEECCCHHHHHHHHHHHHHHCCTTS
T ss_pred             HHhHHHHhccccCcceEEEEcCCEeeccCHHHHhCCCcceEeccCCCCccccCeEEEEcccHHHHHHHHHHHHhcCCCCc
Confidence            7999999999999999999999999999999999999776653  56789999999999999999999999988778889


Q ss_pred             ChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCcccccccccccccc-cccccccccCCCCcEEEEeeCCCCCCCCcc
Q 016559          182 GDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGL-YMLANKWMVDESELHVIHYTLGPLKPWDWW  260 (387)
Q Consensus       182 ~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~-y~~~~~w~~~~~~~~IIHft~gp~KPW~~w  260 (387)
                      +|||+||.+|++++..                 ..+.+||..||++.+. |...+.|....++++||||+ |+.|||+..
T Consensus       163 ~DQd~LN~~f~~w~~~-----------------~~~~~Lp~~yN~~~~~~y~~~~~~~~~~~~~~IIHf~-g~~KPW~~~  224 (263)
T 3u2u_A          163 GDQGILNTFFSSWATT-----------------DIRKHLPFIYNLSSISIYSYLPAFKVFGASAKVVHFL-GRVKPWNYT  224 (263)
T ss_dssp             SHHHHHHHHTTTTTTS-----------------CGGGBCCGGGSEEHHHHHSSHHHHHHHGGGCSEEECC-SSSCGGGSE
T ss_pred             ccHHHHHHHhcccccc-----------------CeeEeCCcccccccchhccccHHHHhhcCCeEEEEEC-CCCcCCCCC
Confidence            9999999999986310                 1478999999998652 32233333345789999995 888999853
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d1ll2a_263 c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cun 1e-43
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 2e-13
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 263 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  150 bits (379), Expect = 1e-43
 Identities = 69/248 (27%), Positives = 119/248 (47%), Gaps = 26/248 (10%)

Query: 29  TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKI 88
           TDQA+VTL   D +  G  VLG S++   +++ + VL +  VSD  +K L+     V  +
Sbjct: 2   TDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITV 61

Query: 89  SLLENP-----NQVRPKRFWGVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFC 143
            +L++        ++        TKL  +++T Y K V++DADT+V+ NI+DLF+  +  
Sbjct: 62  DILDSGDSAHLTLMKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELS 121

Query: 144 A--NLKHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTGGDQGFLNSYYSDFPNAHVFE 201
           A  +    +  NSGV V +PS   +N ++   +  GS+ GGDQG LN++++ +       
Sbjct: 122 AAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATT---- 177

Query: 202 PNLPLEVVNTRPVPNMERLSTLYNA-DVGLYMLANKWMVDESELHVIHYTLGPLKPWDWW 260
                           + L  +YN   + +Y     +    +   V+H+  G  KPW++ 
Sbjct: 178 -------------DIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFL-GQTKPWNYT 223

Query: 261 TSWLLKPV 268
                K V
Sbjct: 224 YDTKTKSV 231
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 100.0
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 99.98
d1o7qa_287 alpha-1,3-galactosyltransferase catalytic domain { 94.25
d1lzia_283 Glycosyltransferase A catalytic domain {Human (Hom 93.75
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Glycogenin
domain: Glycogenin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=1.1e-39  Score=307.50  Aligned_cols=214  Identities=31%  Similarity=0.525  Sum_probs=178.2

Q ss_pred             CCEEEEEEeeCcchHHHHHHHHHHHHHhCCCCcEEEEEcCCCCHHHHHHHHhcCcEEEEeeeeCCCCCC-----CCcchh
Q 016559           29 TDQAYVTLLYGDEFLLGVRVLGKSIRDTGSNKDMVVLVSDGVSDYSKKLLKADGWIVEKISLLENPNQV-----RPKRFW  103 (387)
Q Consensus        29 ~~~Ayvt~~tdd~Yl~~a~VL~~SL~~~ns~~dlVvLv~d~vs~e~~~~L~~~g~~v~~I~~i~~p~~~-----~~~~~~  103 (387)
                      ++.||||+++|++|+++|+|+++||+++|+++++|++++++++++.++.|++.+..++.++.+..+...     ....+.
T Consensus         2 ~~~A~vt~~t~d~Yl~~a~vl~~SL~~~~~~~~~vvl~~~~i~~~~~~~L~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~   81 (263)
T d1ll2a_           2 TDQAFVTLTTNDAYAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTLMKRPELG   81 (263)
T ss_dssp             CSEEEEEEESSHHHHHHHHHHHHHHHHTTCCSEEEEEECTTSCHHHHHHHHHHCSEEEECCTTSTTSTTHHHHHHCGGGH
T ss_pred             CccEEEEEEeCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHhCCcceeEEeecCcchhhhhhhccccch
Confidence            578999999999999999999999999999999999999999999999999999998888877654322     123346


Q ss_pred             hhhhhhhccccccccEEEEEcCCeeecCCchHHhcChhhhhcc--CCCCcccceEEEEeCCHHHHHHHHHHHHhcCCCCC
Q 016559          104 GVYTKLKIFNMTNYKKVVYLDADTIVIKNIEDLFKCRKFCANL--KHSERLNSGVMVVEPSAAVFNDMMTKVNTLGSYTG  181 (387)
Q Consensus       104 ~sy~KL~~~~L~eydRVLYLDaD~lVl~nLdeLF~l~~~~Aa~--~~~~yfNSGVmvinps~~~~~~ile~~~~~~~~~~  181 (387)
                      .+|+||.+|++++||||||||||+||++|||+||+.+..+|+.  ....+||||||+++|+..+++.+.+.+.+...+.+
T Consensus        82 ~ty~Kl~i~~l~~ydkvlYLDaD~lv~~~id~Lf~~~~~~a~~~~~~~~~~nsGv~l~~p~~~~~~~i~~~~~~~~~~~~  161 (263)
T d1ll2a_          82 VTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNSGVFVYQPSVETYNQLLHVASEQGSFDG  161 (263)
T ss_dssp             HHHHHGGGGGCTTCSEEEEECTTEEECSCCGGGGGSCSSEEEECSSSTTSEEEEEEEECCCHHHHHHHHHHHHHTCCTTS
T ss_pred             hhhHHHHHhhhcccceEEEeCCCEEEecCHHHHhcCCccceeccCCCcccccCCcEEECccHHHHHHHHHHHHhhCCCCh
Confidence            7899999999999999999999999999999999999765543  56789999999999999999999999988877888


Q ss_pred             ChHHHHHHHhcCCCCCcccCCCCCcccccCCCCCCccccccccccccccc-ccccccccCCCCcEEEEeeCCCCCCCCcc
Q 016559          182 GDQGFLNSYYSDFPNAHVFEPNLPLEVVNTRPVPNMERLSTLYNADVGLY-MLANKWMVDESELHVIHYTLGPLKPWDWW  260 (387)
Q Consensus       182 ~DQdiLN~~f~d~~~~~~f~p~~~~~~~~~~p~~~~~~Lp~~YN~~~~~y-~~~~~w~~~~~~~~IIHft~gp~KPW~~w  260 (387)
                      +||+++|..+.+..    +.             ..+..||..||...... .....+.....+++||||+ |+.|||+..
T Consensus       162 ~dq~~ln~~~~~~~----~~-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iIHf~-g~~KPW~~~  223 (263)
T d1ll2a_         162 GDQGLLNTFFNSWA----TT-------------DIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFL-GQTKPWNYT  223 (263)
T ss_dssp             SHHHHHHHHTTTTT----TS-------------CGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECC-SSCCGGGSC
T ss_pred             hhhhHHHHHHHhhh----cc-------------CcccccCHHHhhhhhhhhhhhHhHHhhcCCeEEEEeC-CCCCCCCCC
Confidence            99999999998852    11             14678899998875432 1122233345688999995 878999854
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure