Citrus Sinensis ID: 016567

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
cccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccEEEEEEEEEEccccEEEEEEEcccccccEEEEEEEccccccEEEEEEccccccccccccEEcEEEccccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccEEEEccccccccccccEEEEccccccccccccccEEEEEEEEcccEEEEEccccccHHHHHHHHHHccccccccc
ccHHHHHHHHcccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHcccEEEcEEEccccccccEEEEEEEEccccccEEEEEcccccccccEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEEccccccccccccccEEEEEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MTIKSIIHDMMwrrshrvvgdaadhdmaggssptccwanlPQELLREILAKIEAadsawpsrRSVVACAGVCRSWRQITKEIVkvpelsgyltfpisvkqpgprdyLLQCFIKRNRSTQTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLhsddmskgsstylgklrsnflgtkfivydgqpphagakmtrsrSTRLanlkqvspripfgnysVAHISYELNvlgsrgprrmqcvmdsipasaiesggvaptqteflfsnadsfpsipffrsksnrsekflsgplacqkdgalvlrnkaprWHEQLQCWCLNFHGRVTVASVKNfqlvaspengpagleHEKIILQFGkvgkdlftmdyrypISAFQAFAICLSSfdtkiace
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEaadsawpsrrSVVACAGVCRSWRQITKEivkvpelsgyltfpisvkqpgpRDYLLQCFIKRNRSTQTYHLYLSLTNADDGKFLLAARKCRRATCTDYIIslhsddmskgSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTrlanlkqvspripfgnySVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
*****IIHDMMWRRSHRVVGDAAD**MAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDD****SSTYLGKLRSNFLGTKFIVYDG**********************VSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPA*AI****VAPTQTEFLFSNADSFPSIPFF*********FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKI***
**IKS*****************************************************************************************PISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGA***********************NYSVAHISYELNVLGSRGPRRMQCVM****************************************************KDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPEN*PAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH*********STRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
****************************G***PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHA**********RLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI*S*GV***************************************KDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIAC*
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MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
Q10LG8403 Tubby-like F-box protein yes no 0.997 0.957 0.678 1e-157
Q8VY21406 Tubby-like F-box protein yes no 0.992 0.945 0.689 1e-156
Q8H485406 Tubby-like F-box protein yes no 0.906 0.864 0.694 1e-148
Q9SQU1380 Tubby-like F-box protein no no 0.958 0.976 0.633 1e-131
Q6NPQ1389 Tubby-like F-box protein no no 0.966 0.961 0.611 1e-128
Q75HX5445 Tubby-like F-box protein no no 0.958 0.833 0.548 1e-122
Q2QXB2445 Tubby-like F-box protein no no 1.0 0.869 0.512 1e-122
Q6Z2G9428 Tubby-like F-box protein no no 0.901 0.815 0.592 1e-122
Q8LJA9448 Tubby-like F-box protein no no 0.994 0.859 0.511 1e-118
Q7XSV4462 Tubby-like F-box protein no no 0.968 0.811 0.510 1e-117
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1 Back     alignment and function desciption
 Score =  556 bits (1432), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/404 (67%), Positives = 315/404 (77%), Gaps = 18/404 (4%)

Query: 1   MTIKSIIHDM-----------MWRRSHRVVGDA----ADHDMAGGSSPTCCWANLPQELL 45
           M+ +S+I +M           +  RSHR  G A    A       +    CWA LP ELL
Sbjct: 1   MSFRSLIQEMRDEFGSISRHSLRSRSHRGGGGAPRVAAVGPAEAAAMQQSCWAQLPPELL 60

Query: 46  REILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRD 105
           RE+L +IE ++  WPSRR VVACAGVCRSWR ITKEIV+VPE SG LTFPIS+KQPGPRD
Sbjct: 61  REVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRD 120

Query: 106 YLLQCFIKRNRSTQTYHLYLSLTNA--DDGKFLLAARKCRRATCTDYIISLHSDDMSKGS 163
             L+CFI+RNR+TQTY+LY+ LT A  DDGKFLLAARKCR+ TCTDY+ISL   DMSKGS
Sbjct: 121 GTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGS 180

Query: 164 STYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISY 223
           +TY+GKLRSNFLGTKF VYD  PP+ GA +++SRS R+  L QVSPR+P GNY V+HISY
Sbjct: 181 NTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPAGNYPVSHISY 240

Query: 224 ELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEK 283
           ELNVLG+RGPRRM C+MDSIP SA++ GG APTQTEF  S  DSFPSI FFRSKS R + 
Sbjct: 241 ELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISFFRSKSARIDS 300

Query: 284 FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLE 343
             S  L+ QK+  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVAS ENGP   E
Sbjct: 301 ATS-QLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDENGPTNQE 359

Query: 344 HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 387
            +K+ILQFGK+GKDLFTMDYRYPISAFQ+FAICLSSFDTKIACE
Sbjct: 360 QDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1 Back     alignment and function description
>sp|Q6NPQ1|TLP11_ARATH Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function description
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1 Back     alignment and function description
>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
255551637390 phosphoric diester hydrolase, putative [ 0.989 0.982 0.791 1e-180
302399101392 TLP domain class transcription factor [M 1.0 0.987 0.770 1e-178
356555565385 PREDICTED: tubby-like F-box protein 6-li 0.974 0.979 0.786 1e-177
118486104392 unknown [Populus trichocarpa] 0.987 0.974 0.780 1e-177
224107205395 f-box family protein [Populus trichocarp 0.987 0.967 0.777 1e-176
356549056389 PREDICTED: tubby-like F-box protein 6-li 0.974 0.969 0.772 1e-175
357447461393 Tubby-like F-box protein [Medicago trunc 0.994 0.979 0.764 1e-174
225436797405 PREDICTED: tubby-like F-box protein 3-li 0.992 0.948 0.730 1e-173
449518857386 PREDICTED: LOW QUALITY PROTEIN: tubby-li 0.979 0.981 0.748 1e-172
225432392374 PREDICTED: tubby-like F-box protein 6-li 0.909 0.941 0.810 1e-171
>gi|255551637|ref|XP_002516864.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223543952|gb|EEF45478.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 308/389 (79%), Positives = 338/389 (86%), Gaps = 6/389 (1%)

Query: 5   SIIHDMMWR-RSHRVVGDAADHDMAGGS---SPTCCWANLPQELLREILAKIEAADSAWP 60
           S I  M+ R RSHRVV D      A  S       CWAN+PQELLRE+L +IEA++S+WP
Sbjct: 2   SSIRSMIIRSRSHRVVQDGLAPPHAVESRLGEDISCWANMPQELLREVLMRIEASESSWP 61

Query: 61  SRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQT 120
            R+SVVACAGVCR+WR +TKE+VKVPE+SG LTFPISVKQPGPRD+LLQCFIKR RSTQT
Sbjct: 62  PRKSVVACAGVCRTWRHMTKELVKVPEISGKLTFPISVKQPGPRDFLLQCFIKRCRSTQT 121

Query: 121 YHLYLSLTNA--DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTK 178
           Y+LYLSLTNA  DDGK LLAARKCRR TCTDYIISL +DDMSKGSSTY+GKLRSNFLGTK
Sbjct: 122 YYLYLSLTNALTDDGKLLLAARKCRRTTCTDYIISLDADDMSKGSSTYVGKLRSNFLGTK 181

Query: 179 FIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQC 238
           F V+DGQPPHAGAKM +SRSTRL NLKQVSPR+P GNY +AH+SYELNVLGSRGPRRMQC
Sbjct: 182 FTVFDGQPPHAGAKMMKSRSTRLVNLKQVSPRVPAGNYPIAHMSYELNVLGSRGPRRMQC 241

Query: 239 VMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALV 298
           VMD+IPA++I  GG APTQTEF   + D  PS+PFFRSKSN  E FLSGPL+ QKDGAL+
Sbjct: 242 VMDAIPATSIGPGGTAPTQTEFAHHSVDILPSLPFFRSKSNCVENFLSGPLSSQKDGALI 301

Query: 299 LRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDL 358
           L+NK+PRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGP G EHEKIILQFGKVGKDL
Sbjct: 302 LKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPPGPEHEKIILQFGKVGKDL 361

Query: 359 FTMDYRYPISAFQAFAICLSSFDTKIACE 387
           FTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 362 FTMDYRYPISAFQAFAICLSSFDTKIACE 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302399101|gb|ADL36845.1| TLP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|118486104|gb|ABK94895.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224107205|ref|XP_002314408.1| f-box family protein [Populus trichocarpa] gi|222863448|gb|EEF00579.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549056|ref|XP_003542914.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225436797|ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449518857|ref|XP_004166452.1| PREDICTED: LOW QUALITY PROTEIN: tubby-like F-box protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432392|ref|XP_002276906.1| PREDICTED: tubby-like F-box protein 6-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.958 0.976 0.636 1.9e-122
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.968 0.964 0.615 3.3e-118
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.604 0.514 0.559 1.9e-110
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.653 0.568 0.535 1.2e-108
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.764 0.689 0.552 1.3e-107
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.940 0.923 0.540 6e-103
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.865 0.811 0.559 2.7e-100
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.589 0.601 0.493 6.1e-95
MGI|MGI:2651573505 Tub "tubby candidate gene" [Mu 0.224 0.172 0.542 2e-39
RGD|3918505 Tub "tubby homolog (mouse)" [R 0.224 0.172 0.542 2e-39
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1204 (428.9 bits), Expect = 1.9e-122, P = 1.9e-122
 Identities = 252/396 (63%), Positives = 295/396 (74%)

Query:     1 MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-W 59
             MT +S++ +M   R HRVV  AA    A  S P   W+ LP+ELLREIL ++E  D   W
Sbjct:     1 MTFRSLLQEMR-SRPHRVVHAAAS--TANSSDPFS-WSELPEELLREILIRVETVDGGDW 56

Query:    60 PSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQ 119
             PSRR+VVACAGVCRSWR +TKEIV VPE S  LTFPIS+KQ GPRD L+QCFIKRNR+TQ
Sbjct:    57 PSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQ 116

Query:   120 TYHLYLSLTNA--DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGT 177
             +YHLYL LT +  D+GKFLLAA K +RATCTDYIISL SDD+SK S+ YLG++RSNFLGT
Sbjct:   117 SYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGT 176

Query:   178 KFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQ 237
             KF V+DG    A AKM +SRS+   N  +VSPR+P G+Y +AHISYELNVLGSRGPRRM+
Sbjct:   177 KFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYPIAHISYELNVLGSRGPRRMR 232

Query:   238 CVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDG-- 295
             C+MD+IP S +ES GV  + +   FS+  S    P FRS    S+   S   +C   G  
Sbjct:   233 CIMDTIPMSIVESRGVVASTSISSFSSRSS----PVFRS---HSKPLRSNSASCSDSGNN 285

Query:   296 ----ALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQF 351
                  LVL NKAPRWHEQL+CWCLNFHGRVTVASVKNFQLVA  +   AG   E+IILQF
Sbjct:   286 LGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLVAVSDC-EAGQTSERIILQF 344

Query:   352 GKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 387
             GKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct:   345 GKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009620 "response to fungus" evidence=IMP
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H485TLP11_ORYSJNo assigned EC number0.69490.90690.8645yesno
Q8VY21TLP3_ARATHNo assigned EC number0.68940.99220.9458yesno
Q10LG8TLP6_ORYSJNo assigned EC number0.67820.99740.9578yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_VIII1741
SubName- Full=Putative uncharacterized protein; (392 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
pfam01167243 pfam01167, Tub, Tub family 1e-121
pfam1293747 pfam12937, F-box-like, F-box-like 3e-04
pfam0064648 pfam00646, F-box, F-box domain 0.001
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 0.004
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  350 bits (899), Expect = e-121
 Identities = 126/286 (44%), Positives = 164/286 (57%), Gaps = 48/286 (16%)

Query: 101 PGPRDYLLQCFIKRNRSTQTYHLYLSLT---NADDG--KFLLAARKCRRATCTDYIISLH 155
           P PR   +QC I R++S   Y L+ +       ++G  KFLLAARK +R+  ++Y+ISL 
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 156 SDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGN 215
             D+S+    Y+GKLRSNFLGTKF V+D       A++             V+P++  G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGR 107

Query: 216 YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFR 275
             +A + YE NVLG RGPR+M  +M  IP+S        P Q                  
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSHE----RVPIQPL---------------- 147

Query: 276 SKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 335
              N  E  LS      K+  LVL NKAPRW++QLQ + LNFHGRVT ASVKNFQ+V + 
Sbjct: 148 ---NDQESLLSRWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQIVHAS 204

Query: 336 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 381
                  + + I+LQFG+V KD+FTMDYRYP+SAFQAFAICLSSFD
Sbjct: 205 -------DPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.77
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 98.33
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.77
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.51
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 97.4
smart0025641 FBOX A Receptor for Ubiquitination Targets. 97.24
KOG2997366 consensus F-box protein FBX9 [General function pre 89.4
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-126  Score=934.83  Aligned_cols=309  Identities=60%  Similarity=0.986  Sum_probs=286.2

Q ss_pred             CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhhhcCcccccccccccccccCCCCCceeEEEEEE
Q 016567           35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKR  114 (387)
Q Consensus        35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~~v~~p~~~g~~tFp~sLkqPgPr~~~iQC~IkR  114 (387)
                      +.|++||||||+|+|+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||+|+|
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R  122 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR  122 (355)
T ss_pred             chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecceEEEEEecccC----CCCceEEEEeecccCCcceEEEEccCCCCCCCCCceeeeeeecceecEEEEecCCCCCCC
Q 016567          115 NRSTQTYHLYLSLTNA----DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAG  190 (387)
Q Consensus       115 ~k~~~tY~LyL~l~~~----e~~KfLLaARK~rr~~tSnYiISld~~dlSr~s~~yvGKLRSNflGTkF~iYD~g~p~~~  190 (387)
                      ||+|++|+||+++.++    |++||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|.+   
T Consensus       123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~---  199 (355)
T KOG2502|consen  123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN---  199 (355)
T ss_pred             ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC---
Confidence            9999999999999877    678999999999999999999999999999999999999999999999999999732   


Q ss_pred             CccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCcccccCCCCCCccceecccCCCCCCC
Q 016567          191 AKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPS  270 (387)
Q Consensus       191 a~~~~~r~~~~~~~k~vsp~vp~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~gg~~P~~~~~~~~~~~~~~~  270 (387)
                             .+|.++      ++|++++|||+|+||+||||+||||||+|+||.||.++  ++|.+|.|.+..+..      
T Consensus       200 -------~~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~~------  258 (355)
T KOG2502|consen  200 -------PSRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHPS------  258 (355)
T ss_pred             -------cccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCcccccccccccc------
Confidence                   122333      68899999999999999999999999999999999887  899998887654311      


Q ss_pred             ccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEEecCCCCCCCCCCCeEEEE
Q 016567          271 IPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ  350 (387)
Q Consensus       271 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSvKNFQLv~~~~~~~~~~~~~~iiLQ  350 (387)
                                   .+.+.++..++++++|+||.|+|||++||||||||||||+||||||||||..       ++++||||
T Consensus       259 -------------~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQ  318 (355)
T KOG2502|consen  259 -------------LLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQ  318 (355)
T ss_pred             -------------hhhhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEE
Confidence                         1223333447899999999999999999999999999999999999999974       56999999


Q ss_pred             eeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016567          351 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  387 (387)
Q Consensus       351 FGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACE  387 (387)
                      |||||+|+|||||+||||+||||||||||||+|||||
T Consensus       319 FGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  319 FGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             eeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence            9999999999999999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 6e-46
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 3e-45
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 7e-45
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 3e-43
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 2e-40
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  181 bits (459), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 111/299 (37%), Positives = 161/299 (53%), Gaps = 60/299 (20%)
Query: 100 QPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNADDGK--FLLAARKCRRATCTDYI 151
           +P P+   ++C I R++         TY L+L   + +DGK  FLLA RK +++  ++Y+
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHL---DREDGKKVFLLAGRKRKKSKTSNYL 80
Query: 152 ISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPR 210
           IS+   D+S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q    
Sbjct: 81  ISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ---- 132
Query: 211 IPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSF 268
                  +A + YE NVLG +GPR+M  +   +P   +  E   + P             
Sbjct: 133 ------ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP------------- 170
Query: 269 PSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKN 328
                     N  E  L+       +  + L+NK P W++  Q + LNFHGRVT ASVKN
Sbjct: 171 ---------RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKN 221
Query: 329 FQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 387
           FQ++        G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 222 FQIIH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 2e-94
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 6e-92
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 5e-04
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  282 bits (723), Expect = 2e-94
 Identities = 99/293 (33%), Positives = 144/293 (49%), Gaps = 48/293 (16%)

Query: 98  VKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNA---DDGKFLLAARKCRRATCTDYIISL 154
           V +P P+   ++C + R++      +Y S       +   FLLA RK +R+   +Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 155 HSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFG 214
              ++S+G   ++GKLRSN LG +F V+D                     +  S  +   
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASL 133

Query: 215 NYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFF 274
              +A + YE NVLG RGPRRM  ++  + A                    +  P  P  
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVIIPGMSA------------------ENERVPIRP-- 173

Query: 275 RSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 334
               N S+  L        +  + L NK P W++    + LNF GRVT ASVKNFQ+V +
Sbjct: 174 ---RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA 230

Query: 335 PENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 387
            +        + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 231 DD-------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.13
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.93
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.8
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.63
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.88
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 94.36
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 92.39
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 92.26
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 91.38
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-90  Score=669.10  Aligned_cols=242  Identities=40%  Similarity=0.715  Sum_probs=185.8

Q ss_pred             cccCCCCCceeEEEEEEeeec------ceEEEEEecccCCCCceEEEEeecccCCcceEEEEccCCCCCCCCCceeeeee
Q 016567           98 VKQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLR  171 (387)
Q Consensus        98 LkqPgPr~~~iQC~IkR~k~~------~tY~LyL~l~~~e~~KfLLaARK~rr~~tSnYiISld~~dlSr~s~~yvGKLR  171 (387)
                      |+||+|+|+++||+|+|||+|      ++|||||+.   ++++|||||||+|+++|+||+||+|++|+||++++||||||
T Consensus        29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~~---~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLr  105 (276)
T 2fim_A           29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDT---EKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLR  105 (276)
T ss_dssp             GGSCCCTTCCEEEEEEEEC-------CCEEEEEECS---SSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEEEE
T ss_pred             hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEeC---CCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEEEE
Confidence            999999999999999999998      599999972   56899999999999999999999999999999999999999


Q ss_pred             ecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCcccccCC
Q 016567          172 SNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESG  251 (387)
Q Consensus       172 SNflGTkF~iYD~g~p~~~a~~~~~r~~~~~~~k~vsp~vp~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~g  251 (387)
                      |||+||+|+|||+|.+++.               ..+|+++.+++|||+|+||+||||++|||+|+|+||.+.    ++|
T Consensus       106 SNflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~----~~~  166 (276)
T 2fim_A          106 SNLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS----AEN  166 (276)
T ss_dssp             ECSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECBC----TTS
T ss_pred             EccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc----cCC
Confidence            9999999999999954321               135667788999999999999999999999999998532    233


Q ss_pred             CCCCccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEE
Q 016567          252 GVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQL  331 (387)
Q Consensus       252 g~~P~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSvKNFQL  331 (387)
                      +..|.+.    .+               ..++++.++++...+++++|+||+|+|||++|||||||+||||+||||||||
T Consensus       167 ~~~~~~p----~~---------------~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNFQL  227 (276)
T 2fim_A          167 ERVPIRP----RN---------------ASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQI  227 (276)
T ss_dssp             CBCCCCC----SS---------------TTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCEEE
T ss_pred             CEecccC----CC---------------cccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceEEE
Confidence            3332211    00               1111222233445678999999999999999999999999999999999999


Q ss_pred             EecCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016567          332 VASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  387 (387)
Q Consensus       332 v~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACE  387 (387)
                      |+++       ++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       228 v~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          228 VHAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             ECTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             EecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            9864       678999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 1e-105
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-04
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  308 bits (790), Expect = e-105
 Identities = 101/311 (32%), Positives = 155/311 (49%), Gaps = 56/311 (18%)

Query: 83  VKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNADDGKFL 136
           ++V +L  +        +P P+   ++C I R++         TY L+L   +     FL
Sbjct: 5   IEVQDLEEFAL------RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRED-GKKVFL 57

Query: 137 LAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRS 196
           LA RK +++  ++Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD       A     
Sbjct: 58  LAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKAS---- 113

Query: 197 RSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPT 256
                      +         +A + YE NVLG +GPR+M  ++  +             
Sbjct: 114 ---------SSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRN 164

Query: 257 QTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLN 316
           + E L +           R ++               +  + L+NK P W++  Q + LN
Sbjct: 165 EHETLLA-----------RWQNK------------NTESIIELQNKTPVWNDDTQSYVLN 201

Query: 317 FHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAIC 376
           FHGRVT ASVKNFQ++   +        + I++QFG+V +D+FTMDY YP+ A QAFAI 
Sbjct: 202 FHGRVTQASVKNFQIIHGND-------PDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIA 254

Query: 377 LSSFDTKIACE 387
           LSSFD+K+ACE
Sbjct: 255 LSSFDSKLACE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.03
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.84
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.7
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.68
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.5e-86  Score=632.23  Aligned_cols=249  Identities=41%  Similarity=0.706  Sum_probs=208.2

Q ss_pred             cccccccccCCCCCceeEEEEEEeeecc------eEEEEEecccCCCCceEEEEeecccCCcceEEEEccCCCCCCCCCc
Q 016567           92 LTFPISVKQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSST  165 (387)
Q Consensus        92 ~tFp~sLkqPgPr~~~iQC~IkR~k~~~------tY~LyL~l~~~e~~KfLLaARK~rr~~tSnYiISld~~dlSr~s~~  165 (387)
                      -.|   |.||||+|++|||+|+|||+|.      +|+|||+..+ ++++|||||||+|+++++|||||+|++|+||++++
T Consensus        11 ~~F---l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~~-gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~   86 (265)
T d1c8za_          11 EEF---ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDRED-GKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDS   86 (265)
T ss_dssp             HHH---HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECTT-SCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCC
T ss_pred             HHH---hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccCC-CceeEEEEEeeecCCCcceEEEEccHHHhcccccc
Confidence            456   9999999999999999999874      6899998643 34569999999999999999999999999999999


Q ss_pred             eeeeeeecceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEeccccCCCCCceeEEeeccCCc
Q 016567          166 YLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPA  245 (387)
Q Consensus       166 yvGKLRSNflGTkF~iYD~g~p~~~a~~~~~r~~~~~~~k~vsp~vp~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~  245 (387)
                      |||||||||+||+|+|||+|.+++.++..             +....+.++|||+|+||+||||+||||+|+|+||.++.
T Consensus        87 yvGKlrSNflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~  153 (265)
T d1c8za_          87 YIGKLRSNLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNM  153 (265)
T ss_dssp             CSEEEEECTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCT
T ss_pred             eeEEeeccccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCc
Confidence            99999999999999999999665443211             11223457899999999999999999999999997753


Q ss_pred             ccccCCCCCCccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccc
Q 016567          246 SAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVAS  325 (387)
Q Consensus       246 s~i~~gg~~P~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aS  325 (387)
                      +...    .    .+.          |     ....++.+....+...+++++|+||+|+||++++||+|||+|||++||
T Consensus       154 ~~~~----~----~~~----------p-----~~~~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~S  210 (265)
T d1c8za_         154 VHER----V----CIR----------P-----RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQAS  210 (265)
T ss_dssp             TSCB----C----CCC----------C-----SSTTSSHHHHHHTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEECB
T ss_pred             cccc----c----ccC----------C-----CCcchhhhHHhhccCcccceEEecCCCeeeccCCEEEeccCCEEeccc
Confidence            2110    0    010          0     011122222333446789999999999999999999999999999999


Q ss_pred             cceeEEEecCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016567          326 VKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  387 (387)
Q Consensus       326 vKNFQLv~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACE  387 (387)
                      |||||||++       ++++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       211 vKNFql~~~-------~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         211 VKNFQIIHG-------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             TTEEEEECT-------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             cceEEEEeC-------CCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            999999986       3678999999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure