Citrus Sinensis ID: 016574

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------

MASSAHKQQRQLHLPNICVGGGAAPPPTPSNNHPSTSASPAADALSRLLHSLPSPTLSLPNTRTRSPSATRPPLISLSNPNRNEQILSSASQLGFFQLTNHGISSQLAHSAELEALSLFELERDKKLSCFPKNWPLGYEAEEEEDEEGNGESFCLDSACYSDSNELNLTSLREFTRAMEKVGLKIFEMLAAALGFENPLGDDPTWYCSLLWMSKNLHGNKPVLSGGFYPYIVGLHYQIRPSKHTLIADAGSVPISAEVGSILVTLGDIAQVWSNGKTKKVRSGRPMAGLGDEKNKSDESISMILLVTLPIDSIISPLIPKLDNNNNKNGDDAENTEDDNNNSEGQGQSHDDEEGRKLFESFSFEDYAWRVYHERLLFKDDPLDRYRI

cccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccEEEccccccHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHccccccccccccccccccccEEEcEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEcccccccccccccccccEEEEEEEcccccEEEEEcccEEEcccccccEEEEcccEEHHHcccccccEEEccccccccccccccccEEEEEEccccccccEEEccccccccccccccccccccccccccccccccccccHHHccccccccHHHHHHHHHHHHccccccccccccc

ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccccccccEEEEEccccccccccccccccccEEEEEEEcccccEEEEEcccEEEccccccEEEEEEccHHHHHccccEEEEEccccccccEEEEcccccEEEEEEEccccccccccccHHHccccccccccccccHHccccccccccccccccccccEEccccHHHHHHHHHHccHEEccccccEEcc

massahkqqrqlhlpnicvgggaappptpsnnhpstsaspAADALSRLLhslpsptlslpntrtrspsatrpplislsnpnrneqILSSasqlgffqltnhgissqLAHSAELEALSLFELERdkklscfpknwplgyeaeeeedeegngesfcldsacysdsnelnlTSLREFTRAMEKVGLKIFEMLAAALgfenplgddptwYCSLLWMSknlhgnkpvlsggfypyIVGLhyqirpskhtliadagsvpisaEVGSILVTLGDIAQvwsngktkkvrsgrpmaglgdeknksdeSISMILLVTlpidsiisplipkldnnnnkngddaenteddnnnsegqgqshddeeGRKLfesfsfedYAWRVYHErllfkddpldryri

MASSAHKQQRQLHLPNICVGGGAAPPPTPSNNHPSTSASPAADALSRLLHSLpsptlslpntrtrspsatrpplislsnpnRNEQILSSASQLGFFQLTNHGISSQLAHSAELEALSLFELERDKKLSCFPKNWPLGYEAEEEEDEEGNGESFCLDSACYSDSNELNLTSLREFTRAMEKVGLKIFEMLAAALGFENPLGDDPTWYCSLLWMSKNLHGNKPVLSGGFYPYIVGLHYQIRPSKHTLIADAGSVPISAEVGSILVTLGDIAQvwsngktkkvrsgrpmaglgdeknksdESISMILLVTLPIDSIISPLIPKLDNNNNKNGDDAenteddnnnsegqgqshddeeGRKLFESFSFEDYAWRVYHErllfkddpldryri

MASSAHKQQRQLHLPNICVGGGaappptpsnnhpstsaspaaDAlsrllhslpsptlslpNTRTRSPSATRPPLISLSNPNRNEQILSSASQLGFFQLTNHGIssqlahsaelealslfeleRDKKLSCFPKNWPLgyeaeeeedeegngeSFCLDSACYSDSNELNLTSLREFTRAMEKVGLKIFEMLAAALGFENPLGDDPTWYCSLLWMSKNLHGNKPVLSGGFYPYIVGLHYQIRPSKHTLIADAGSVPISAEVGSILVTLGDIAQVWSNGKTKKVRSGRPMAGLGDEKNKSDESISMILLVTlpidsiisplipKLdnnnnkngddaenteddnnnseGQGQSHDDEEGRKLFESFSFEDYAWRVYHERLLFKDDPLDRYRI

********************************************************************************************LGFFQLTNHGISSQLAHSAELEALSLFELERDKKLSCFPKNWPL****************FCLDSACYSDSNELNLTSLREFTRAMEKVGLKIFEMLAAALGFENPLGDDPTWYCSLLWMSKNLHGNKPVLSGGFYPYIVGLHYQIRPSKHTLIADAGSVPISAEVGSILVTLGDIAQVWSN*************************ISMILLVTLPIDSIISPLI**************************************LFESFSFEDYAWRVYHERLLFKD********

************************************************LHSLPS*****************PPLISLSNPNRNEQILSSASQLGFFQLTNHGISSQLAHSAELEALSLFELER*****************EEEEDEEGNGESFCLDSACYSDSNELNLTSLREFTRAMEKVGLKIFEMLAAALGFENPLGDDPTWYCSLLWMSKNLHGNKPVLSGGFYPYIVGLHYQIRPSKHTLIADAGSVPISAEVGSILVTLGDIAQVWSNGKTKKVRSGRPMAGLGDEKNKSDESISMILLVTLPIDSIISPLIPKL***********ENTEDDNNN**************KLFESFSFEDYAWRVYHERLLFKDDPLDRYRI

**********QLHLPNICVGGGAAPP***************ADALSRLLHSLPSPTLSL***********RPPLISLSNPNRNEQILSSASQLGFFQLTNHGISSQLAHSAELEALSLFELERDKKLSCFPKNWPLGYE************SFCLDSACYSDSNELNLTSLREFTRAMEKVGLKIFEMLAAALGFENPLGDDPTWYCSLLWMSKNLHGNKPVLSGGFYPYIVGLHYQIRPSKHTLIADAGSVPISAEVGSILVTLGDIAQVWSN*********************SDESISMILLVTLPIDSIISPLIPKLDNNNNKNGDD*********************EGRKLFESFSFEDYAWRVYHERLLFKDDPLDRYRI

***********LHL*NICVGGGAAPPP***********SPAADALSRLLHSLPSPTLSLPNTR****SATRPPLISLSNPNRNEQILSSASQLGFFQLTNHGISSQLAHSAELEALSLFELERDKKLSCFPKNWPLGYEAEEEEDEEGNGESFCLDSACYSDSNELNLTSLREFTRAMEKVGLKIFEMLAAALGFENPLGDDPTWYCSLLWMSKNLHGNKPVLSGGFYPYIVGLHYQIRPSKHTLIADAGSVPISAEVGSILVTLGDIAQVWSNGKTKKVRSGRPMAGLGDEKNKSDESISMILLVTLPIDSIISPLIPKLD********************************RKLFESFSFEDYAWRVYHERLLFKDDPLDRYRI

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SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		387	2.2.26 [Sep-21-2011]
Q9XFR9		341	Gibberellin 2-beta-dioxyg	no	no	0.627	0.712	0.251	4e-10
Q8LEA2		329	Gibberellin 2-beta-dioxyg	no	no	0.684	0.805	0.223	8e-09
O64692		335	Gibberellin 2-beta-dioxyg	no	no	0.620	0.716	0.239	3e-08
Q9SQ80		327	Gibberellin 2-beta-dioxyg	N/A	no	0.589	0.697	0.236	5e-07
Q9XG83		332	Gibberellin 2-beta-dioxyg	N/A	no	0.545	0.635	0.232	2e-06
Q9SVS8		349	Gibberellin 3-beta-dioxyg	no	no	0.503	0.558	0.235	9e-06
Q04644		318	1-aminocyclopropane-1-car	N/A	no	0.625	0.761	0.232	4e-05
O49561		338	Gibberellin 2-beta-dioxyg	no	no	0.503	0.576	0.234	7e-05
Q39103		358	Gibberellin 3-beta-dioxyg	no	no	0.622	0.673	0.250	0.0001
O04395		291	Flavonol synthase/flavano	N/A	no	0.589	0.783	0.240	0.0001

>sp\|Q9XFR9\|G2OX2_ARATH Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1	Back alignment and function desciption

 Score = 66.2 bits (160), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 70/278 (25%), Positives = 120/278 (43%), Gaps = 35/278 (12%)

Query: 73  PLISLSNPNRNEQILSSASQLGFFQLTNHGISSQLAHSAELEALSLFELERDKKLSCFPK 132
           P+++L++P    +I+ +  + GFF++ NHG+  +L    E EA+  F L +  K    P 
Sbjct: 32  PVVNLADPEAKTRIVKACEEFGFFKVVNHGVRPELMTRLEQEAIGFFGLPQSLKNRAGPP 91

Query: 133 NWPLGYEAEE--EEDEEGNGESFCLD----------SACYSDSNELNLTSLREFTRAMEK 180
             P GY  +      + G  E   L+          SA +  + ++   S+ E+ + +++
Sbjct: 92  E-PYGYGNKRIGPNGDVGWIEYLLLNANPQLSSPKTSAVFRQTPQIFRESVEEYMKEIKE 150

Query: 181 VGLKIFEMLAAALGFE------NPLGDDPTWYCSLL--WMSKNLHGNKPVLSG-GFY--P 229
           V  K+ EM+A  LG E        L D+ +  C  L  + +      K V  G G +  P
Sbjct: 151 VSYKVLEMVAEELGIEPRDTLSKMLRDEKSDSCLRLNHYPAAEEEAEKMVKVGFGEHTDP 210

Query: 230 YIVG-LHYQIRPSKHTLIADAGSVPISAEVGSILVTLGDIAQVWSNGKTKKVRSGRPMAG 288
            I+  L           + D   V +  +  S  + +GD  QV +NG+ K V+       
Sbjct: 211 QIISVLRSNNTAGLQICVKDGSWVAVPPDHSSFFINVGDALQVMTNGRFKSVKH----RV 266

Query: 289 LGDEKNKSDESISMILLVTLPIDSIISP---LIPKLDN 323
           L D +      ISMI     P+   I+P   L+P+ D+
Sbjct: 267 LADTRR---SRISMIYFGGPPLSQKIAPLPCLVPEQDD 301

Catalyzes the 2-beta-hydroxylation of several biologically active gibberellins, leading to the homeostatic regulation of their endogenous level. Catabolism of gibberellins (GAs) plays a central role in plant development. Converts GA9/GA20 to GA51/GA29 and GA4/GA1 to GA34/GA8.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 1EC: 3

>sp\|Q8LEA2\|G2OX1_ARATH Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2	Back alignment and function description

>sp\|O64692\|G2OX3_ARATH Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1	Back alignment and function description

>sp\|Q9SQ80\|G2OX1_PEA Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1	Back alignment and function description

>sp\|Q9XG83\|G2OX_PHACN Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1	Back alignment and function description

>sp\|Q9SVS8\|G3OX3_ARATH Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1	Back alignment and function description

>sp\|Q04644\|ACCO1_CUCME 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Cucumis melo GN=ACO1 PE=2 SV=1	Back alignment and function description

>sp\|O49561\|G2OX8_ARATH Gibberellin 2-beta-dioxygenase 8 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=2	Back alignment and function description

>sp\|Q39103\|G3OX1_ARATH Gibberellin 3-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA4 PE=1 SV=2	Back alignment and function description

>sp\|O04395\|FLS_MATIN Flavonol synthase/flavanone 3-hydroxylase (Fragment) OS=Matthiola incana PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		387
356501168		360	PREDICTED: uncharacterized protein LOC10	0.896	0.963	0.551	7e-99
224098650		357	2-oxoglutarate-dependent dioxygenase [Po	0.894	0.969	0.579	8e-96
449516211		377	PREDICTED: LOW QUALITY PROTEIN: 2'-deoxy	0.950	0.976	0.512	2e-95
449460943		384	PREDICTED: 2'-deoxymugineic-acid 2'-diox	0.953	0.960	0.502	2e-94
255574788		435	conserved hypothetical protein [Ricinus	0.976	0.868	0.522	1e-88
357492735		379	Gibberellin 2-beta-dioxygenase [Medicago	0.950	0.970	0.515	2e-86
225448461		382	PREDICTED: gibberellin 2-beta-dioxygenas	0.894	0.905	0.520	3e-85
297833900		375	hypothetical protein ARALYDRAFT_478455 [	0.917	0.946	0.457	1e-73
30681619		371	2-oxoglutarate (2OG) and Fe(II)-dependen	0.914	0.954	0.464	8e-72
297736594		380	unnamed protein product [Vitis vinifera]	0.677	0.689	0.561	2e-71

>gi\|356501168\|ref\|XP_003519400.1\| PREDICTED: uncharacterized protein LOC100785042 [Glycine max]	Back alignment and taxonomy information

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 205/372 (55%), Positives = 269/372 (72%), Gaps = 25/372 (6%)

Query: 20  GGGAAPPPTPSNNHPST-SASPAADALSRLLHSLPSPTLSLPNTRTRSPS---ATRPPLI 75
           G  +APPPTP+ +H +  S+S AADALSRLL  LP PTLSLP TR  SPS   AT PP +
Sbjct: 9   GATSAPPPTPAAHHDNIMSSSDAADALSRLLQRLP-PTLSLP-TRLPSPSSAAATCPPCL 66

Query: 76  SLSNPNRNEQILSSASQLGFFQLTNHGISSQLAHSAELEALSLFELERDKKLSCFPKNWP 135
           SL++      +LS  S+LG+ QLT+H + S+LA+SAE EAL+LF+L +D+K S FPKNWP
Sbjct: 67  SLND------VLSCVSKLGYAQLTDHSVPSELANSAESEALALFDLSQDQKQSLFPKNWP 120

Query: 136 LGYEAEEEEDEEGNGESFCLDSACYSDSNELNLTSLREFTRAMEKVGLKIFEMLAAALGF 195
           LGY  +E+EDE+G  +SF  DSAC ++S+EL L SLR+F R +EK+GL I + L   LG 
Sbjct: 121 LGYGNDEDEDEDGVADSFRFDSACSTESSELALFSLRKFARELEKLGLMIVDELTKDLGC 180

Query: 196 ENPLGDDPTWYCSLLWMSKNLHGNKPVLSGGFYPYIVGLHYQIRPSKHTLIADAGSVPIS 255
           ENPLGDDPT  CS++W+S++L GNK   SGGFYP+++GL YQIR  K++L++D+G V + 
Sbjct: 181 ENPLGDDPTRVCSVMWVSESLPGNK---SGGFYPFVIGLQYQIRNQKYSLLSDSGWVSVL 237

Query: 256 AEVGSILVTLGDIAQVWSNGKTKKVRSGRPMAGLGDEKNKSDESISMILLVTLPIDSIIS 315
             V SILVT GDIAQVWSNGK KKVR GRPMA +GDE       I+M LL+TLP DS ++
Sbjct: 238 PHVDSILVTFGDIAQVWSNGKLKKVR-GRPMATVGDENGS--RCITMSLLITLPTDSRVA 294

Query: 316 PLIPKLDNNNNKNGDDAENTEDDNNNSEGQGQSHDDEEGRKLFESFSFEDYAWRVYHERL 375
           PL+PK+  N ++  ++ E  E++NN+   +         +++F SF FEDYAWRVYHER+
Sbjct: 295 PLLPKVTCNKDQKEEEIEGEEEENNDGGDEELE------KRVFNSFDFEDYAWRVYHERI 348

Query: 376 LFKDDPLDRYRI 387
           LFK DPLDRYR+
Sbjct: 349 LFK-DPLDRYRV 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224098650\|ref\|XP_002311230.1\| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa] gi\|222851050\|gb\|EEE88597.1\| 2-oxoglutarate-dependent dioxygenase [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449516211\|ref\|XP_004165141.1\| PREDICTED: LOW QUALITY PROTEIN: 2'-deoxymugineic-acid 2'-dioxygenase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|449460943\|ref\|XP_004148203.1\| PREDICTED: 2'-deoxymugineic-acid 2'-dioxygenase-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255574788\|ref\|XP_002528301.1\| conserved hypothetical protein [Ricinus communis] gi\|223532256\|gb\|EEF34059.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

>gi\|357492735\|ref\|XP_003616656.1\| Gibberellin 2-beta-dioxygenase [Medicago truncatula] gi\|355517991\|gb\|AES99614.1\| Gibberellin 2-beta-dioxygenase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|225448461\|ref\|XP_002272219.1\| PREDICTED: gibberellin 2-beta-dioxygenase 1-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297833900\|ref\|XP_002884832.1\| hypothetical protein ARALYDRAFT_478455 [Arabidopsis lyrata subsp. lyrata] gi\|297330672\|gb\|EFH61091.1\| hypothetical protein ARALYDRAFT_478455 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|30681619\|ref\|NP_187725.2\| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase domain-containing protein [Arabidopsis thaliana] gi\|26451990\|dbj\|BAC43085.1\| unknown protein [Arabidopsis thaliana] gi\|28950943\|gb\|AAO63395.1\| At3g11150 [Arabidopsis thaliana] gi\|332641485\|gb\|AEE75006.1\| 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase domain-containing protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297736594\|emb\|CBI25465.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		387
TAIR\|locus:2074603		371	AT3G11150 "AT3G11150" [Arabido	0.565	0.590	0.436	1.7e-43
TAIR\|locus:2198258		341	GA2OX2 "gibberellin 2-oxidase"	0.322	0.366	0.248	6.1e-05
TAIR\|locus:2032080		329	ATGA2OX1 "Arabidopsis thaliana	0.080	0.094	0.322	0.00049

TAIR\|locus:2074603 AT3G11150 "AT3G11150" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
 Identities = 103/236 (43%), Positives = 144/236 (61%)

Query:   152 SFCLDSACYSDSNELNLTSLREFTRAMEKVGLKIFEMLAAALGFENPLGDDPTWYCSLLW 211
             SFCLD+ C +DS+ELNL+SLREFTR +EKVGLK  EMLA ALGF    G D T + +L+W
Sbjct:   148 SFCLDADCSTDSSELNLSSLREFTRTLEKVGLKTVEMLANALGF----GYDSTRFNTLMW 203

Query:   212 MSKNLHGNKPVLSGGFYPYIVGLHYQIRPSKHTLIADAGSVPISAEVGSILVTLGDIAQV 271
             +++ +  ++P ++ GFYP++V L YQIR  K+ L+ ++G V +   V S+LVTLGDIAQV
Sbjct:   204 VNQGVPDDEPEVTNGFYPFVVCLQYQIREQKYCLLTESGWVSVLPRVDSVLVTLGDIAQV 263

Query:   272 WSNGKTKKVRSGRPMAGLGDEKNKSDESISMILLVTXXXXXXXXXXXXKLXXXXXXXXXX 331
             W NG+ K+V+  RP+   G +K+   + ++M L++T             +          
Sbjct:   264 WRNGEVKRVKY-RPVLCSG-QKDGPVKCVTMTLMLTLPMDSMVSSLKDMISDGDKEEEYA 321

Query:   332 XXXXXXXXXXXXGQGQSHDDEEGRKLFESFSFEDYAWRVYHERLLFKDDPLDRYRI 387
                           G +  DE  R+ F  FSF++YAWRVY ERL F+D PLDRYRI
Sbjct:   322 EEEEE--------DGGARSDE--RRAFRPFSFKEYAWRVYQERLFFRD-PLDRYRI 366

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR\|locus:2198258 GA2OX2 "gibberellin 2-oxidase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2032080 ATGA2OX1 "Arabidopsis thaliana gibberellin 2-oxidase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.14.11	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	2OGox23	2-oxoglutarate-dependent dioxygenase (357 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		387
PLN02156		335	PLN02156, PLN02156, gibberellin 2-beta-dioxygenase	8e-11
pfam14226		113	pfam14226, DIOX_N, non-haem dioxygenase in morphin	2e-09
COG3491		322	COG3491, PcbC, Isopenicillin N synthase and relate	4e-08
PLN02254		358	PLN02254, PLN02254, gibberellin 3-beta-dioxygenase	4e-07
PLN02750		345	PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy	6e-06
PLN02639		337	PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy	4e-05
PLN02276		361	PLN02276, PLN02276, gibberellin 20-oxidase	1e-04
PLN02365		300	PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy	2e-04
PLN02912		348	PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy	2e-04
PLN02704		335	PLN02704, PLN02704, flavonol synthase	0.002
PLN02299		321	PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl	0.002

>gnl\|CDD\|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase	Back alignment and domain information

 Score = 62.3 bits (151), Expect = 8e-11
 Identities = 67/286 (23%), Positives = 116/286 (40%), Gaps = 40/286 (13%)

Query: 67  PSATRPPLISLSNPNRNEQILSSASQLGFFQLTNHGISSQLAHSAELEALSLFELERDKK 126
           P     P+I L++ +   QI+ +  + GFF++ NHG+   L    E EA+  F L    K
Sbjct: 22  PVPVLIPVIDLTDSDAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLK 81

Query: 127 LSCFPKNWPLGYEAEEEEDEEGNG--------ESFCLDS----ACYSDSNELNLTSLREF 174
               P + P GY  +        G         + CL+S    A +  +  +   ++ E+
Sbjct: 82  DKAGPPD-PFGYGTKRIGPNGDVGWLEYILLNANLCLESHKTTAVFRHTPAIFREAVEEY 140

Query: 175 TRAMEKVGLKIFEMLAAALGFE------NPLGDDPTWYCSLL--WMSKNLHGNKPVLSGG 226
            + M+++  K+ EM+   L  E        +    +  C  +  +  K     K  +  G
Sbjct: 141 MKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKESDSCLRMNHYPEKEETPEKVEIGFG 200

Query: 227 FY--PYIVGLHYQIRPSK----HTLIADAGSVPISAEVGSILVTLGDIAQVWSNGKTKKV 280
            +  P ++ L   +R +        + D   V +  +  S  V +GD  QV +NG+ K V
Sbjct: 201 EHTDPQLISL---LRSNDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMTNGRFKSV 257

Query: 281 RSGRPMAGLGDEKNKSDESISMILLVTLPIDSIISP---LIPKLDN 323
           +  R +       N     ISMI     P+   I+P   L+PK D+
Sbjct: 258 KH-RVVT------NTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDD 296

Length = 335

>gnl\|CDD\|222608 pfam14226, DIOX_N, non-haem dioxygenase in morphine synthesis N-terminal	Back alignment and domain information

>gnl\|CDD\|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only]	Back alignment and domain information

>gnl\|CDD\|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase	Back alignment and domain information

>gnl\|CDD\|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|215156 PLN02276, PLN02276, gibberellin 20-oxidase	Back alignment and domain information

>gnl\|CDD\|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

>gnl\|CDD\|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>gnl\|CDD\|166345 PLN02704, PLN02704, flavonol synthase	Back alignment and domain information

>gnl\|CDD\|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		387
PLN02216		357	protein SRG1	100.0
PLN02758		361	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02947		374	oxidoreductase	100.0
PLN02254		358	gibberellin 3-beta-dioxygenase	100.0
PLN02904		357	oxidoreductase	100.0
PLN02276		361	gibberellin 20-oxidase	100.0
PLN02912		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02639		337	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
KOG0143		322	consensus Iron/ascorbate family oxidoreductases [S	100.0
PLN03178		360	leucoanthocyanidin dioxygenase; Provisional	100.0
PLN02393		362	leucoanthocyanidin dioxygenase like protein	100.0
PLN02997		325	flavonol synthase	100.0
PLN02299		321	1-aminocyclopropane-1-carboxylate oxidase	100.0
PLN03002		332	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02704		335	flavonol synthase	100.0
PLN02750		345	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02365		300	2-oxoglutarate-dependent dioxygenase	100.0
PLN02515		358	naringenin,2-oxoglutarate 3-dioxygenase	100.0
PLN02156		335	gibberellin 2-beta-dioxygenase	100.0
PLN00417		348	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PTZ00273		320	oxidase reductase; Provisional	100.0
PLN02485		329	oxidoreductase	100.0
PLN02984		341	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PLN02403		303	aminocyclopropanecarboxylate oxidase	100.0
COG3491		322	PcbC Isopenicillin N synthase and related dioxygen	100.0
PLN03001		262	oxidoreductase, 2OG-Fe(II) oxygenase family protei	100.0
PF14226		116	DIOX_N: non-haem dioxygenase in morphine synthesis	99.83
PLN03176		120	flavanone-3-hydroxylase; Provisional	99.78
PF03171		98	2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent	99.77
TIGR02466		201	conserved hypothetical protein. This family consis	84.37

>PLN02216 protein SRG1	Back alignment and domain information

Probab=100.00  E-value=4.2e-68  Score=527.21  Aligned_cols=309  Identities=18%  Similarity=0.226  Sum_probs=254.1

Q ss_pred             HHHHHHH-hhccCCCCCCCCCCCCCCCC--C--CCCCceeeCCCh-------hHHHHHHhhhccccEEEEecCCCCHHHH
Q 016574           41 AADALSR-LLHSLPSPTLSLPNTRTRSP--S--ATRPPLISLSNP-------NRNEQILSSASQLGFFQLTNHGISSQLA  108 (387)
Q Consensus        41 ~~d~l~~-~~~~~p~~~l~~p~~~~~~~--~--~~~IPvIDls~~-------~~~~~l~~A~~~~GFF~l~NHGI~~~li  108 (387)
                      +++++.. .+..||.+|+++++.++...  .  ...||||||+.+       .++++|.+||++||||||+|||||.+++
T Consensus        17 ~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li   96 (357)
T PLN02216         17 VQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSSFL   96 (357)
T ss_pred             HHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHHHH
Confidence            4455554 67899988888776654221  1  247999999853       3789999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHhhccCCC-CCCCCCcCCCcc---ccCCCcceeeecCCC------CCCCCCC-Ch-HHHHHHHH
Q 016574          109 HSAELEALSLFELERDKKLSCFPK-NWPLGYEAEEEE---DEEGNGESFCLDSAC------YSDSNEL-NL-TSLREFTR  176 (387)
Q Consensus       109 ~~~~~~~~~FF~LP~eeK~~~~~~-~~~~GY~~~~~~---~~~d~~E~f~~~~~~------~~~p~~~-~~-~~~~~y~~  176 (387)
                      +++++++++||+||.|+|+++... ...+||......   ...||+|.|.+...+      ..||..+ .| +.+.+|++
T Consensus        97 ~~~~~~~~~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p~~fr~~~~~y~~  176 (357)
T PLN02216         97 DKVKSEIQDFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLPLPFRDTLETYSA  176 (357)
T ss_pred             HHHHHHHHHHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccchHHHHHHHHHHHH
Confidence            999999999999999999998653 356788654321   124899998875332      1244322 24 78999999


Q ss_pred             HHHHHHHHHHHHHHHHhCCCCCCCC-CCCc-cccccccccccCCCCCCccc-----ccCCceEEEeee-eCCCeeEEccC
Q 016574          177 AMEKVGLKIFEMLAAALGFENPLGD-DPTW-YCSLLWMSKNLHGNKPVLSG-----GFYPYIVGLHYQ-IRPSKHTLIAD  248 (387)
Q Consensus       177 ~~~~L~~~Ll~~la~~LGl~~~f~~-~~~~-~~~~~rl~~YPp~p~p~~~~-----g~~~~~ltLl~q-~~~~gLqV~~~  248 (387)
                      +|++|+.+||++||++|||++.+++ .+.. ..+.+|++|||||++++.+.     .|++ +||||+| ++++||||+++
T Consensus       177 ~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g-~lTlL~q~~~v~GLQV~~~  255 (357)
T PLN02216        177 EVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAV-GLTILLQVNEVEGLQIKKD  255 (357)
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCc-eEEEEEecCCCCceeEEEC
Confidence            9999999999999999999754433 3333 34689999999999887653     3444 8999999 46899999989


Q ss_pred             CceEeeccCCCcEEEecchHHHHHhCCccccCCCCccccCCCCCCCCCCceEEEEEcccCCCCCeEecCCcccCCCCCCC
Q 016574          249 AGSVPISAEVGSILVTLGDIAQVWSNGKTKKVRSGRPMAGLGDEKNKSDESISMILLVTLPIDSIISPLIPKLDNNNNKN  328 (387)
Q Consensus       249 g~Wv~V~p~pgalVVNvGD~Lq~~SNG~~kS~~~HRVv~~~~~~~~~~~~R~Sia~F~~P~~d~~I~Pl~~~v~~~~~~~  328 (387)
                      |+|++|+|+||+|||||||+||+||||+|||+. |||++      +..++|||||||++|+.|++|+|+++|++++    
T Consensus       256 g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~-HRVv~------~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~----  324 (357)
T PLN02216        256 GKWVSVKPLPNALVVNVGDILEIITNGTYRSIE-HRGVV------NSEKERLSVATFHNTGMGKEIGPAKSLVERQ----  324 (357)
T ss_pred             CEEEECCCCCCeEEEEcchhhHhhcCCeeeccC-ceeec------CCCCCEEEEEEEecCCCCCeEeCcHHHcCCC----
Confidence            999999999999999999999999999999999 99997      3457899999999999999999999998762    


Q ss_pred             CCCCCCccccCCCCCCCCCCCCCccccCCCCCccHHHHHHHHHHhhccCCCCccccCCC
Q 016574          329 GDDAENTEDDNNNSEGQGQSHDDEEGRKLFESFSFEDYAWRVYHERLLFKDDPLDRYRI  387 (387)
Q Consensus       329 ~~~~~~~~~~~~~~~g~~~~~~~~~~p~~y~~~~~~ey~~~~~~~~~~~~~~~l~~~ri  387 (387)
                                               +|++|++|+|+||++.++...+.++ ..||.+||
T Consensus       325 -------------------------~p~~Y~~~t~~ey~~~~~~~~~~~~-~~~~~~~~  357 (357)
T PLN02216        325 -------------------------KAALFKSLTTKEYFDGLFSRELDGK-AYLDAMRI  357 (357)
T ss_pred             -------------------------CCCCCCCcCHHHHHHHHHhcccCCc-chhhhhcC
Confidence                                     6889999999999998888888888 89999987

>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02947 oxidoreductase	Back alignment and domain information

>PLN02254 gibberellin 3-beta-dioxygenase	Back alignment and domain information

>PLN02904 oxidoreductase	Back alignment and domain information

>PLN02276 gibberellin 20-oxidase	Back alignment and domain information

>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]	Back alignment and domain information

>PLN03178 leucoanthocyanidin dioxygenase; Provisional	Back alignment and domain information

>PLN02393 leucoanthocyanidin dioxygenase like protein	Back alignment and domain information

>PLN02997 flavonol synthase	Back alignment and domain information

>PLN02299 1-aminocyclopropane-1-carboxylate oxidase	Back alignment and domain information

>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02704 flavonol synthase	Back alignment and domain information

>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02365 2-oxoglutarate-dependent dioxygenase	Back alignment and domain information

>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase	Back alignment and domain information

>PLN02156 gibberellin 2-beta-dioxygenase	Back alignment and domain information

>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PTZ00273 oxidase reductase; Provisional	Back alignment and domain information

>PLN02485 oxidoreductase	Back alignment and domain information

>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PLN02403 aminocyclopropanecarboxylate oxidase	Back alignment and domain information

>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]	Back alignment and domain information

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein	Back alignment and domain information

>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A	Back alignment and domain information

>PLN03176 flavanone-3-hydroxylase; Provisional	Back alignment and domain information

>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit	Back alignment and domain information

>TIGR02466 conserved hypothetical protein	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		387
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	1e-18
3oox_A		312	Putative 2OG-Fe(II) oxygenase family protein; stru	1e-16
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	2e-16
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	5e-16
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	6e-14
1odm_A		331	Isopenicillin N synthase; antibiotic biosynthesis,	9e-12
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280	Back alignment and structure

 Score = 84.2 bits (209), Expect = 1e-18
 Identities = 45/276 (16%), Positives = 86/276 (31%), Gaps = 46/276 (16%)

Query: 73  PLISLSNPNRNEQILSSASQLGFFQLTNHGISSQLAHSAELEALSLFELERDKKLSCFPK 132
             I     +  ++ + S  + GF  L+NH I  +L      E  + F  E   +     +
Sbjct: 5   ETIDYRAADSAKRFVESLRETGFGVLSNHPIDKELVERIYTEWQAFFNSEAKNEFMFNRE 64

Query: 133 NWPLGY---EAEEEEDEEGNG---ESFCLDSACYSDSNELNLTSLRE----FTRAMEKVG 182
               G+      E           E +      +         SLR     +      + 
Sbjct: 65  T-HDGFFPASISETAKGHTVKDIKEYY------HVYPWGRIPDSLRANILAYYEKANTLA 117

Query: 183 LKIFEMLAAALGFENPLGDDPTWYCSLLWMSKNLHGNKPVLSGGFYPYIVG--LHYQIRP 240
            ++ E +           D+     S+       + +K +L    YP + G      IR 
Sbjct: 118 SELLEWIETY------SPDEIKAKFSIPLPEMIANSHKTLLRILHYPPMTGDEEMGAIRA 171

Query: 241 SKHT-------LIADAGS-----------VPISAEVGSILVTLGDIAQVWSNGKTKKVRS 282
           + H        L                 + + ++ G+I++ +GD+ Q  S+G       
Sbjct: 172 AAHEDINLITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDMLQEASDGYFPSTSH 231

Query: 283 GRPMAGLGDEKNKSDESISMILLVTLPIDSIISPLI 318
            R +   G +K K    IS+ L +      ++S   
Sbjct: 232 -RVINPEGTDKTK--SRISLPLFLHPHPSVVLSERY 264

PyMOL of 3on7

>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312	Back alignment and structure

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319	Back alignment and structure

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311	Back alignment and structure

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356	Back alignment and structure

>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		387
1gp6_A		356	Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep	100.0
3oox_A		312	Putative 2OG-Fe(II) oxygenase family protein; stru	100.0
1w9y_A		319	1-aminocyclopropane-1-carboxylate oxidase 1; oxyge	100.0
1dcs_A		311	Deacetoxycephalosporin C synthase; ferrous oxygena	100.0
1odm_A		331	Isopenicillin N synthase; antibiotic biosynthesis,	100.0
3on7_A		280	Oxidoreductase, iron/ascorbate family; structural	100.0
2rg4_A		216	Uncharacterized protein; rhodobacterales, oceanico	92.62

>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*	Back alignment and structure

Probab=100.00  E-value=3.1e-66  Score=513.36  Aligned_cols=301  Identities=17%  Similarity=0.182  Sum_probs=250.5

Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCCCC---------CCCCceeeCCCh---------hHHHHHHhhhccccEEEEecCC
Q 016574           41 AADALSRLLHSLPSPTLSLPNTRTRSPS---------ATRPPLISLSNP---------NRNEQILSSASQLGFFQLTNHG  102 (387)
Q Consensus        41 ~~d~l~~~~~~~p~~~l~~p~~~~~~~~---------~~~IPvIDls~~---------~~~~~l~~A~~~~GFF~l~NHG  102 (387)
                      +++++...+.++|..|+++++.++....         ...||||||+.+         +++++|.+||++||||||+|||
T Consensus         7 v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~nHG   86 (356)
T 1gp6_A            7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHG   86 (356)
T ss_dssp             HHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCS
T ss_pred             HHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEeCCC
Confidence            5666666788999888876554432111         236999999863         2678999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHHHhhccCCC---CCCCCCcCCCcc---ccCCCcceeeecCCC------CCCCCC-CCh-
Q 016574          103 ISSQLAHSAELEALSLFELERDKKLSCFPK---NWPLGYEAEEEE---DEEGNGESFCLDSAC------YSDSNE-LNL-  168 (387)
Q Consensus       103 I~~~li~~~~~~~~~FF~LP~eeK~~~~~~---~~~~GY~~~~~~---~~~d~~E~f~~~~~~------~~~p~~-~~~-  168 (387)
                      |+.++++++++.+++||+||.|+|+++...   ...+||......   ...||+|.|.+...+      ..||.. ..+ 
T Consensus        87 i~~~l~~~~~~~~~~FF~lP~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~~~wP~~~~~fr  166 (356)
T 1gp6_A           87 IPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI  166 (356)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHH
T ss_pred             CCHHHHHHHHHHHHHHHCCCHHHHHhhcccccccCccccCcCcccCCCCCCChhheeeeecCCccccccccCCCcchhhh
Confidence            999999999999999999999999999753   257899866532   235999999886532      224542 234 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CC---ccccccccccccCCCCCCcc-----cccCCceEEEeeeeC
Q 016574          169 TSLREFTRAMEKVGLKIFEMLAAALGFENPLGDD-PT---WYCSLLWMSKNLHGNKPVLS-----GGFYPYIVGLHYQIR  239 (387)
Q Consensus       169 ~~~~~y~~~~~~L~~~Ll~~la~~LGl~~~f~~~-~~---~~~~~~rl~~YPp~p~p~~~-----~g~~~~~ltLl~q~~  239 (387)
                      +.+.+|+++|.+|+.+||++||++|||+++++.. +.   ...+.+|++|||||++|+..     +.|++ +||||+|++
T Consensus       167 ~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g-~lTlL~qd~  245 (356)
T 1gp6_A          167 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVS-ALTFILHNM  245 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCS-SEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecCCCCCcccccCcCCccCCC-eEEEEEEcC
Confidence            8899999999999999999999999997654433 33   35678999999999988765     23554 799999999


Q ss_pred             CCeeEEccCCceEeeccCCCcEEEecchHHHHHhCCccccCCCCccccCCCCCCCCCCceEEEEEcccCCCCC-eEecCC
Q 016574          240 PSKHTLIADAGSVPISAEVGSILVTLGDIAQVWSNGKTKKVRSGRPMAGLGDEKNKSDESISMILLVTLPIDS-IISPLI  318 (387)
Q Consensus       240 ~~gLqV~~~g~Wv~V~p~pgalVVNvGD~Lq~~SNG~~kS~~~HRVv~~~~~~~~~~~~R~Sia~F~~P~~d~-~I~Pl~  318 (387)
                      .+||||+++|+|++|+|+||+|||||||+||+||||+|||+. |||+++      ..++|||||||++|+.|+ +|+|++
T Consensus       246 v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~-HRVv~~------~~~~R~Sia~F~~P~~d~~~i~pl~  318 (356)
T 1gp6_A          246 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSIL-HRGLVN------KEKVRISWAVFCEPPKDKIVLKPLP  318 (356)
T ss_dssp             CCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCC-EEECCC------SSCCEEEEEEEEECCTTTCEECCCG
T ss_pred             CCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccC-ceecCC------CCCCEEEEEEeecCCCCCcEEeCCh
Confidence            999999999999999999999999999999999999999999 999984      446899999999999999 999999


Q ss_pred             cccCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCccHHHHHHHHHHhhccCC
Q 016574          319 PKLDNNNNKNGDDAENTEDDNNNSEGQGQSHDDEEGRKLFESFSFEDYAWRVYHERLLFK  378 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~y~~~~~~ey~~~~~~~~~~~~  378 (387)
                      +|++++                             +|++|++|||+||+...+..++.+|
T Consensus       319 ~~~~~~-----------------------------~p~~y~~~t~~eyl~~~~~~~~d~~  349 (356)
T 1gp6_A          319 EMVSVE-----------------------------SPAKFPPRTFAQHIEHKLFGKEQEE  349 (356)
T ss_dssp             GGCCSS-----------------------------SCCSSCCEEHHHHHHHHHHHHHHHH
T ss_pred             hhcCCC-----------------------------CCccCCCccHHHHHHHHHHhccCcc
Confidence            999862                             6889999999999988888777665

PyMOL of 1gp6

>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}	Back alignment and structure

>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X	Back alignment and structure

>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*	Back alignment and structure

>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...	Back alignment and structure

>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}	Back alignment and structure

>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		387
d1dcsa_		311	b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S	3e-17
d1w9ya1		307	b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla	1e-14
d1gp6a_		349	b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr	2e-13
d1odma_		329	b.82.2.1 (A:) Isopenicillin N synthase {Emericella	1e-06

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311	Back information, alignment and structure


class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Deacetoxycephalosporin C synthase
species: Streptomyces clavuligerus [TaxId: 1901]

 Score = 79.6 bits (195), Expect = 3e-17
 Identities = 40/279 (14%), Positives = 76/279 (27%), Gaps = 34/279 (12%)

Query: 73  PLISLS---NPNRNEQILSSASQLGFFQLTNHGISSQLAHSAELEALSLFEL---ERDKK 126
           P  SL+        ++        G F LT+ G++     SA+   +  FE       + 
Sbjct: 6   PTFSLAELQQGLHQDEFRRCLRDKGLFYLTDCGLTDTELKSAKDLVIDFFEHGSEAEKRA 65

Query: 127 LSCFPKNWPLGYEAEEEEDEEG---------NGESFCLDSACYSDSNELNLTSLREFTRA 177
           ++        G+   E E                 + + +A     +        ++   
Sbjct: 66  VTSPVPTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTADNLFPSGDFERIWTQYFDR 125

Query: 178 MEKVGLKIFEMLAAALGFENPLGDDPTWYCSLLWMSKNLHGNKPVLSGGFYPYIVGLHYQ 237
                  +   +  A G E   G +    C  L      +  +           + +   
Sbjct: 126 QYTASRAVAREVLRATGTEPDGGVEAFLDCEPLLR--FRYFPQVPEHRSAEEQPLRMAPH 183

Query: 238 IRPSKHTLIADA---------------GSVPISAEVGSILVTLGDIAQVWSNGKTKKVRS 282
              S  TLI                      +     ++LV  G IA + + G+ K  R 
Sbjct: 184 YDLSMVTLIQQTPCANGFVSLQAEVGGAFTDLPYRPDAVLVFCGAIATLVTGGQVKAPR- 242

Query: 283 GRPMAGLGDEKNKSDESISMILLVTLPIDSIISPLIPKL 321
               A   D+   S    S +  +    D   S  + + 
Sbjct: 243 HHVAAPRRDQIAGS-SRTSSVFFLRPNADFTFSVPLARE 280

PyMOL of d1dcsa_

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307	Back information, alignment and structure

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349	Back information, alignment and structure

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		387
d1gp6a_		349	Anthocyanidin synthase {Mouse-ear cress (Arabidops	100.0
d1w9ya1		307	1-aminocyclopropane-1-carboxylate oxidase 1 {Petun	100.0
d1dcsa_		311	Deacetoxycephalosporin C synthase {Streptomyces cl	100.0
d1odma_		329	Isopenicillin N synthase {Emericella nidulans [Tax	100.0

>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4e-63  Score=486.22  Aligned_cols=294  Identities=18%  Similarity=0.203  Sum_probs=234.2

Q ss_pred             HHHHHHHhhccCCCCCCCCCCCCCCC---------CCCCCCceeeCCCh---------hHHHHHHhhhccccEEEEecCC
Q 016574           41 AADALSRLLHSLPSPTLSLPNTRTRS---------PSATRPPLISLSNP---------NRNEQILSSASQLGFFQLTNHG  102 (387)
Q Consensus        41 ~~d~l~~~~~~~p~~~l~~p~~~~~~---------~~~~~IPvIDls~~---------~~~~~l~~A~~~~GFF~l~NHG  102 (387)
                      ++.++.+++.+||..|+++|+.++..         .+..+||||||+.+         .++++|.+||++||||||+|||
T Consensus         6 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~l~~~d~~~r~~~~~~l~~A~~~~GFf~l~nHG   85 (349)
T d1gp6a_           6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLINHG   85 (349)
T ss_dssp             HHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEESCS
T ss_pred             hHHHHhCCCccCCHhhcCChhhcCCCCccccccccCCCCCcCeEEChhcCCCCHHHHHHHHHHHHHHHHhCCEEEEEccC
Confidence            55677789999998887776654442         34568999999864         3688999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHhcCCHHHhhccCCCC---CCCCCcCCCccc---cCCCcceeeecC-C-CC----CCCCCC-Ch-
Q 016574          103 ISSQLAHSAELEALSLFELERDKKLSCFPKN---WPLGYEAEEEED---EEGNGESFCLDS-A-CY----SDSNEL-NL-  168 (387)
Q Consensus       103 I~~~li~~~~~~~~~FF~LP~eeK~~~~~~~---~~~GY~~~~~~~---~~d~~E~f~~~~-~-~~----~~p~~~-~~-  168 (387)
                      |+.++++++++++++||+||.|+|+++....   ...||.....+.   ..++.+.+.... . ..    .||... .+ 
T Consensus        86 I~~~li~~~~~~~~~FF~lP~eeK~k~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~wp~~~~~f~  165 (349)
T d1gp6a_          86 IPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYI  165 (349)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCHHHHGGGBCBGGGTBCSEEECCCCCSTTCCCCSCEEEEEEEESGGGCCGGGSCCSSTTHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHhhhhcccccCCccccccccccccccccchhhhhcccccccccccccccccccchHH
Confidence            9999999999999999999999999987532   233443332221   124444433211 1 11    233321 23 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CC---CccccccccccccCCCCCCcc-----cccCCceEEEeeeeC
Q 016574          169 TSLREFTRAMEKVGLKIFEMLAAALGFENPLGD-DP---TWYCSLLWMSKNLHGNKPVLS-----GGFYPYIVGLHYQIR  239 (387)
Q Consensus       169 ~~~~~y~~~~~~L~~~Ll~~la~~LGl~~~f~~-~~---~~~~~~~rl~~YPp~p~p~~~-----~g~~~~~ltLl~q~~  239 (387)
                      +.+.+|+++|.+|+.+||++||++||+++.++. .+   ....+.+|++|||+++.+...     +.|++ +||||+|+.
T Consensus       166 e~~~~~~~~~~~la~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~g-~lTlL~q~~  244 (349)
T d1gp6a_         166 EATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVS-ALTFILHNM  244 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEECCCSSTTTCCSEEEECCCS-SEEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHhccccccceeeeecccccccchhhccccccCCCCc-ceEEEeccC
Confidence            789999999999999999999999999765433 22   334568999999999776544     34555 799999999


Q ss_pred             CCeeEEccCCceEeeccCCCcEEEecchHHHHHhCCccccCCCCccccCCCCCCCCCCceEEEEEcccCCCCCeE-ecCC
Q 016574          240 PSKHTLIADAGSVPISAEVGSILVTLGDIAQVWSNGKTKKVRSGRPMAGLGDEKNKSDESISMILLVTLPIDSII-SPLI  318 (387)
Q Consensus       240 ~~gLqV~~~g~Wv~V~p~pgalVVNvGD~Lq~~SNG~~kS~~~HRVv~~~~~~~~~~~~R~Sia~F~~P~~d~~I-~Pl~  318 (387)
                      ++||||+++|+|++|+|.+|++||||||+||+||||+|||+. |||+.+      ..++||||+||++|+.|++| +|++
T Consensus       245 ~~GLqv~~~g~W~~V~p~~~a~vVNvGD~l~~~TnG~~~St~-HRVv~~------~~~~R~Si~~F~~p~~d~~i~~pl~  317 (349)
T d1gp6a_         245 VPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSIL-HRGLVN------KEKVRISWAVFCEPPKDKIVLKPLP  317 (349)
T ss_dssp             CCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCC-EEECCC------SSCCEEEEEEEEECCTTTCEECCCG
T ss_pred             CcceeeecCCceEEccCCCCCeeeeHHhHHHHHhCCCccCcC-ccccCC------CCCCeEEEEEEecCCCcceeecCCH
Confidence            999999999999999999999999999999999999999999 999984      44689999999999999865 8999


Q ss_pred             cccCCCCCCCCCCCCCccccCCCCCCCCCCCCCccccCCCCCccHHHHHHHHH
Q 016574          319 PKLDNNNNKNGDDAENTEDDNNNSEGQGQSHDDEEGRKLFESFSFEDYAWRVY  371 (387)
Q Consensus       319 ~~v~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~y~~~~~~ey~~~~~  371 (387)
                      +||+++                             +|++|++||++||++..+
T Consensus       318 ~~v~~~-----------------------------~p~~y~~~t~~e~~~~rl  341 (349)
T d1gp6a_         318 EMVSVE-----------------------------SPAKFPPRTFAQHIEHKL  341 (349)
T ss_dssp             GGCCSS-----------------------------SCCSSCCEEHHHHHHHHH
T ss_pred             HHcCCC-----------------------------CCCCCCCccHHHHHHHHH
Confidence            999872                             688999999999997644

PyMOL of d1gp6a_

>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]}	Back information, alignment and structure

>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]}	Back information, alignment and structure