Citrus Sinensis ID: 016575

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MDLLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
ccHHHHcccccEEccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEcccEEEcHHHHHHHHHcccccccccccccccccEEEEccccccHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEccccccccEEEcEEEEcccccccccHHHHHHHHHHHcccccccccccccccEEEEcccccEEEcccccccccccccEEEEcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHccccccccccccccccccccccccccccccccccccHHcccc
ccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEEEcccEEcHHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHcHHHHHHHcHHHccccccccEEEEcccccHHHcccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccEEEEEEEEEEEEccccccccHHHHHHHHHHHHccccccHHHHccccEEEEcccccEEEccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHcccccccHHHHHHHHHHHccccHHHHHHHHcccccccccEHHcEcccccccccccccccccHHHHHHHHcc
MDLLDKMETFLftsesvneghpdklcDQISDAVLDAcleqdpeskvacetctktnMVMVFGEITTKAKVDYEKIVRDTCRsigfvsddvgldadhCKVLVNIeqqspdiaqgvhghftkrpedigagdqghmfgyatdetsefmplSHVLATKLGARLTEvrknstcswlrpdgktqVTVEYYNDNGAMVPVRVHTVLIStqhdetvtndEIAADLkehvikpvipekyldektifhlnpsgrfviggphgdagltgRKIIIDtyggwgahgggafsgkdptkvdrsgaYIVRQAAKSIVANGLARRCIVQVSYaigvpeplSVFEILKIVKEsfdfrpgmmtinldlkrggngrflktaayghfgrddpdftwevvkplkwekpqa
MDLLDKMETFLFTsesvneghpdKLCDQISDAVLDACLEQDPEskvacetctktnmvMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTevrknstcswlrpdgktQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKESFDFRPGMMTInldlkrggngRFLKTAAYghfgrddpdfTWEVVKPlkwekpqa
MDLLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYggwgahgggafsgKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
***********************KLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTK****IGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW*****
***********FTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKP**
MDLLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
****************VNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQ*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDLLDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
A9P822392 S-adenosylmethionine synt yes no 0.981 0.969 0.936 0.0
Q5DNB1393 S-adenosylmethionine synt N/A no 0.984 0.969 0.923 0.0
Q94FA4393 S-adenosylmethionine synt N/A no 0.984 0.969 0.923 0.0
Q9AT56393 S-adenosylmethionine synt N/A no 0.984 0.969 0.921 0.0
P17562393 S-adenosylmethionine synt yes no 0.984 0.969 0.918 0.0
P23686393 S-adenosylmethionine synt yes no 0.984 0.969 0.923 0.0
A4PU48394 S-adenosylmethionine synt N/A no 0.981 0.964 0.913 0.0
Q94FA6393 S-adenosylmethionine synt N/A no 0.984 0.969 0.918 0.0
Q9AT55393 S-adenosylmethionine synt N/A no 0.984 0.969 0.918 0.0
Q96551393 S-adenosylmethionine synt N/A no 0.976 0.961 0.928 0.0
>sp|A9P822|METK1_POPTR S-adenosylmethionine synthase 1 OS=Populus trichocarpa GN=METK1 PE=2 SV=1 Back     alignment and function desciption
 Score =  729 bits (1883), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/393 (93%), Positives = 375/393 (95%), Gaps = 13/393 (3%)

Query: 7   METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
           METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDP+SKVACETCTKTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60

Query: 67  AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 126
            K+DYEKIVRDTCR+IGF+SDDVGLDAD CKVLVNIEQQSPDIAQGVHGHFTKRPE+IGA
Sbjct: 61  GKIDYEKIVRDTCRNIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 120

Query: 127 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 186
           GDQGHMFGYATDET E+MPLSHVLATKLGARLTEVRKN TC WLRPDGKTQVTVEYYNDN
Sbjct: 121 GDQGHMFGYATDETPEYMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDN 180

Query: 187 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246
           GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240

Query: 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 306
           GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 300

Query: 307 RCIVQVSYAIGVPEPLSVF------------EILKIVKESFDFRPGMMTINLDLKRGGNG 354
           RCIVQVSYAIGVPEPLSVF            EILKIVKE+FDFRPGMMTINLDLKRGGN 
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGN- 359

Query: 355 RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 387
           RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA
Sbjct: 360 RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 392
Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.
Populus trichocarpa (taxid: 3694)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6
>sp|Q5DNB1|METK_BRARP S-adenosylmethionine synthase OS=Brassica rapa subsp. pekinensis GN=SAMS PE=2 SV=1 Back     alignment and function description
>sp|Q94FA4|METK5_BRAJU S-adenosylmethionine synthase 5 OS=Brassica juncea GN=MSAMS5 PE=2 SV=1 Back     alignment and function description
>sp|Q9AT56|METK1_ELAUM S-adenosylmethionine synthase 1 OS=Elaeagnus umbellata GN=SAMS1 PE=2 SV=1 Back     alignment and function description
>sp|P17562|METK2_ARATH S-adenosylmethionine synthase 2 OS=Arabidopsis thaliana GN=SAM2 PE=1 SV=1 Back     alignment and function description
>sp|P23686|METK1_ARATH S-adenosylmethionine synthase 1 OS=Arabidopsis thaliana GN=SAM1 PE=1 SV=2 Back     alignment and function description
>sp|A4PU48|METK_MEDTR S-adenosylmethionine synthase OS=Medicago truncatula GN=METK PE=3 SV=1 Back     alignment and function description
>sp|Q94FA6|METK3_BRAJU S-adenosylmethionine synthase 3 OS=Brassica juncea GN=MSAMS3 PE=2 SV=1 Back     alignment and function description
>sp|Q9AT55|METK2_ELAUM S-adenosylmethionine synthase 2 OS=Elaeagnus umbellata GN=SAMS2 PE=2 SV=1 Back     alignment and function description
>sp|Q96551|METK1_CATRO S-adenosylmethionine synthase 1 OS=Catharanthus roseus GN=SAMS1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
255548295393 s-adenosylmethionine synthetase, putativ 0.984 0.969 0.944 0.0
255543014403 s-adenosylmethionine synthetase, putativ 0.984 0.945 0.931 0.0
224130888392 s-adenosylmethionine synthetase 4 [Popul 0.981 0.969 0.936 0.0
224064730392 s-adenosylmethionine synthetase 5 [Popul 0.981 0.969 0.936 0.0
75284101393 RecName: Full=S-adenosylmethionine synth 0.984 0.969 0.923 0.0
374095594394 S-adenosylmethionine synthetase [Cajanus 0.971 0.954 0.912 0.0
75308026393 RecName: Full=S-adenosylmethionine synth 0.984 0.969 0.921 0.0
166872393 S-adenosylmethionine synthetase [Arabido 0.984 0.969 0.926 0.0
297809979394 S-adenosylmethionine synthetase [Arabido 0.981 0.964 0.920 0.0
449436329393 PREDICTED: S-adenosylmethionine synthase 0.984 0.969 0.916 0.0
>gi|255548295|ref|XP_002515204.1| s-adenosylmethionine synthetase, putative [Ricinus communis] gi|223545684|gb|EEF47188.1| s-adenosylmethionine synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  735 bits (1897), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/393 (94%), Positives = 375/393 (95%), Gaps = 12/393 (3%)

Query: 7   METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
           METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDP+SKVACETCTKTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60

Query: 67  AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 126
           AKVDYEKIVRDTCR+IGFVSDDVGLDAD CKVLVNIEQQSPDIAQGVHGHFTKRPE+IGA
Sbjct: 61  AKVDYEKIVRDTCRNIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEEIGA 120

Query: 127 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 186
           GDQGHMFGYATDET EFMPLSHVLATKLGARLTEVRKN TC WLRPDGKTQVTVEYYNDN
Sbjct: 121 GDQGHMFGYATDETPEFMPLSHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYYNDN 180

Query: 187 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246
           GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240

Query: 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 306
           GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 300

Query: 307 RCIVQVSYAIGVPEPLSVF------------EILKIVKESFDFRPGMMTINLDLKRGGNG 354
           RCIVQVSYAIGVPEPLSVF            EILKIVKE+FDFRPGMMTINLDLKRGGN 
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGNS 360

Query: 355 RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 387
           RFLKTAAYGHFGRDDPDFTWEVVKPLKWEK QA
Sbjct: 361 RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKDQA 393

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255543014|ref|XP_002512570.1| s-adenosylmethionine synthetase, putative [Ricinus communis] gi|223548531|gb|EEF50022.1| s-adenosylmethionine synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224130888|ref|XP_002320949.1| s-adenosylmethionine synthetase 4 [Populus trichocarpa] gi|223635313|sp|A9P822.1|METK1_POPTR RecName: Full=S-adenosylmethionine synthase 1; Short=AdoMet synthase 1; AltName: Full=Methionine adenosyltransferase 1; Short=MAT 1 gi|118481145|gb|ABK92525.1| unknown [Populus trichocarpa] gi|222861722|gb|EEE99264.1| s-adenosylmethionine synthetase 4 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224064730|ref|XP_002301543.1| s-adenosylmethionine synthetase 5 [Populus trichocarpa] gi|222843269|gb|EEE80816.1| s-adenosylmethionine synthetase 5 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|75284101|sp|Q5DNB1.1|METK_BRARP RecName: Full=S-adenosylmethionine synthase; Short=AdoMet synthase; AltName: Full=Methionine adenosyltransferase; Short=MAT gi|75306462|sp|Q94FA4.1|METK5_BRAJU RecName: Full=S-adenosylmethionine synthase 5; Short=AdoMet synthase 5; AltName: Full=Methionine adenosyltransferase 5; Short=MAT 5 gi|14600072|gb|AAK71235.1| S-adenosylmethionine synthetase [Brassica juncea] gi|56130947|gb|AAV80205.1| S-adenosyl-L-methionine synthetase [Brassica rapa subsp. pekinensis] Back     alignment and taxonomy information
>gi|374095594|gb|AEY85025.1| S-adenosylmethionine synthetase [Cajanus cajan] Back     alignment and taxonomy information
>gi|75308026|sp|Q9AT56.1|METK1_ELAUM RecName: Full=S-adenosylmethionine synthase 1; Short=AdoMet synthase 1; AltName: Full=Methionine adenosyltransferase 1; Short=MAT 1 gi|13540316|gb|AAK29409.1|AF346305_1 S-adenosyl-L-methionine synthetase [Elaeagnus umbellata] Back     alignment and taxonomy information
>gi|166872|gb|AAA32868.1| S-adenosylmethionine synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297809979|ref|XP_002872873.1| S-adenosylmethionine synthetase [Arabidopsis lyrata subsp. lyrata] gi|297318710|gb|EFH49132.1| S-adenosylmethionine synthetase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449436329|ref|XP_004135945.1| PREDICTED: S-adenosylmethionine synthase 1-like [Cucumis sativus] gi|449436367|ref|XP_004135964.1| PREDICTED: S-adenosylmethionine synthase 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
TAIR|locus:2141385393 SAM-2 "S-adenosylmethionine sy 0.984 0.969 0.885 3.8e-188
TAIR|locus:2196160393 SAM1 "S-adenosylmethionine syn 0.984 0.969 0.890 7.9e-188
TAIR|locus:2089070393 MTO3 "METHIONINE OVER-ACCUMULA 0.984 0.969 0.857 3e-179
TAIR|locus:2058011390 MAT3 "methionine adenosyltrans 0.968 0.961 0.850 2.2e-176
DICTYBASE|DDB_G0291179384 metK "S-adenosylmethionine syn 0.956 0.963 0.634 6.3e-124
UNIPROTKB|A7E3T7395 MAT2A "S-adenosylmethionine sy 0.948 0.929 0.613 4.2e-118
UNIPROTKB|D0G777395 MATA2 "S-adenosylmethionine sy 0.948 0.929 0.613 4.2e-118
UNIPROTKB|E2R431395 MAT2A "Uncharacterized protein 0.948 0.929 0.611 1.4e-117
UNIPROTKB|P31153395 MAT2A "S-adenosylmethionine sy 0.948 0.929 0.611 1.4e-117
MGI|MGI:2443731395 Mat2a "methionine adenosyltran 0.948 0.929 0.608 1.8e-117
TAIR|locus:2141385 SAM-2 "S-adenosylmethionine synthetase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1824 (647.1 bits), Expect = 3.8e-188, P = 3.8e-188
 Identities = 348/393 (88%), Positives = 359/393 (91%)

Query:     7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
             METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDP+SKVACETCTKTNMVMVFGEITTK
Sbjct:     1 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPDSKVACETCTKTNMVMVFGEITTK 60

Query:    67 AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 126
             A +DYEKIVRDTCRSIGF+SDDVGLDAD CKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA
Sbjct:    61 ATIDYEKIVRDTCRSIGFISDDVGLDADKCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 120

Query:   127 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 186
             GDQGHMFGYATDET E MPLSHVLATK+GARLTEVRKN TC WLRPDGKTQVTVEYYNDN
Sbjct:   121 GDQGHMFGYATDETPELMPLSHVLATKIGARLTEVRKNGTCRWLRPDGKTQVTVEYYNDN 180

Query:   187 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246
             GAMVPVRVHTVLISTQHDETVTNDEIA DLKEHVIKP+IPEKYLD+KTIFHLNPSGRFVI
Sbjct:   181 GAMVPVRVHTVLISTQHDETVTNDEIARDLKEHVIKPIIPEKYLDDKTIFHLNPSGRFVI 240

Query:   247 GGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLAR 306
             GGPHGDAGLTGRKIIIDTY             KDPTKVDRSGAYIVRQAAKS+VANG+AR
Sbjct:   241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVANGMAR 300

Query:   307 RCIVQVSYAIGVPEPLSVF------------EILKIVKESFDFRPGMMTINLDLKRGGNG 354
             R +VQVSYAIGVPEPLSVF            EILKIVKE+FDFRPGMMTINLDLKRGGNG
Sbjct:   301 RALVQVSYAIGVPEPLSVFVDTYGTGLIPDKEILKIVKETFDFRPGMMTINLDLKRGGNG 360

Query:   355 RFLKTAAYGHFGRDDPDFTWEVVKPLKWEKPQA 387
             RF KTAAYGHFGRDDPDFTWEVVKPLKW+KPQA
Sbjct:   361 RFQKTAAYGHFGRDDPDFTWEVVKPLKWDKPQA 393
GO:0004478 "methionine adenosyltransferase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006556 "S-adenosylmethionine biosynthetic process" evidence=IEA;ISS
GO:0005730 "nucleolus" evidence=IDA
GO:0005618 "cell wall" evidence=IDA
GO:0005507 "copper ion binding" evidence=IDA
GO:0071281 "cellular response to iron ion" evidence=IEP
GO:0005829 "cytosol" evidence=IDA;RCA
GO:0070062 "extracellular vesicular exosome" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0006970 "response to osmotic stress" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2196160 SAM1 "S-adenosylmethionine synthetase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089070 MTO3 "METHIONINE OVER-ACCUMULATOR 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058011 MAT3 "methionine adenosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0291179 metK "S-adenosylmethionine synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|A7E3T7 MAT2A "S-adenosylmethionine synthase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|D0G777 MATA2 "S-adenosylmethionine synthase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2R431 MAT2A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P31153 MAT2A "S-adenosylmethionine synthase isoform type-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2443731 Mat2a "methionine adenosyltransferase II, alpha" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q96551METK1_CATRO2, ., 5, ., 1, ., 60.92820.97670.9618N/Ano
Q96552METK2_CATRO2, ., 5, ., 1, ., 60.91600.98440.9694N/Ano
Q9LUT2METK4_ARATH2, ., 5, ., 1, ., 60.89050.98440.9694nono
A9PHE9METK5_POPTR2, ., 5, ., 1, ., 60.91230.97150.9518nono
P43281METK2_SOLLC2, ., 5, ., 1, ., 60.90580.98440.9694N/Ano
P43280METK1_SOLLC2, ., 5, ., 1, ., 60.92090.98190.9669N/Ano
A7Q0V4METK5_VITVI2, ., 5, ., 1, ., 60.92560.97670.9667yesno
Q4LB21METK4_HORVU2, ., 5, ., 1, ., 60.89390.99220.9696N/Ano
Q56TU3METK2_DAUCA2, ., 5, ., 1, ., 60.90330.98440.9694N/Ano
Q6SYB9METK2_TOBAC2, ., 5, ., 1, ., 60.86040.96890.9615N/Ano
A9PDZ7METK2_POPTR2, ., 5, ., 1, ., 60.91070.98190.9669nono
A7NVX9METK2_VITVI2, ., 5, ., 1, ., 60.92110.98440.9694yesno
A9PEK8METK3_POPTR2, ., 5, ., 1, ., 60.91750.97150.9518yesno
Q6F3F0METK3_ATRNU2, ., 5, ., 1, ., 60.89310.98190.9595N/Ano
Q9LGU6METK3_ORYSJ2, ., 5, ., 1, ., 60.89140.99220.9696yesno
Q9LDQ7METK_CAMSI2, ., 5, ., 1, ., 60.91860.95340.9389N/Ano
Q84MM2METK_LITCN2, ., 5, ., 1, ., 60.90580.98440.9694N/Ano
P49611METK1_BRAJU2, ., 5, ., 1, ., 60.91340.98440.9694N/Ano
A7PRJ6METK4_VITVI2, ., 5, ., 1, ., 60.90050.98190.9669nono
P93254METK_MESCR2, ., 5, ., 1, ., 60.89540.97930.9668N/Ano
Q8GTL5METK_CARPA2, ., 5, ., 1, ., 60.93240.96380.8694N/Ano
P50300METK_PINBN2, ., 5, ., 1, ., 60.89050.98440.9694N/Ano
P47916METK_POPDE2, ., 5, ., 1, ., 60.90970.97150.9518N/Ano
Q7XZR1METK1_ATRNU2, ., 5, ., 1, ., 60.88540.98190.9595N/Ano
A4PU48METK_MEDTR2, ., 5, ., 1, ., 60.91320.98190.9644N/Ano
A9NYY0METK2_PICSI2, ., 5, ., 1, ., 60.88540.98440.9694N/Ano
Q9SBQ7METK3_PETHY2, ., 5, ., 1, ., 60.91580.98190.9669N/Ano
Q5DNB1METK_BRARP2, ., 5, ., 1, ., 60.92360.98440.9694N/Ano
B0LXM0METK_WHEAT2, ., 5, ., 1, ., 60.89310.98440.9621N/Ano
A2Y053METK1_ORYSI2, ., 5, ., 1, ., 60.89560.98440.9621N/Ano
Q94FA4METK5_BRAJU2, ., 5, ., 1, ., 60.92360.98440.9694N/Ano
Q94FA6METK3_BRAJU2, ., 5, ., 1, ., 60.91850.98440.9694N/Ano
Q8W3Y4METK_PHALU2, ., 5, ., 1, ., 60.92030.97410.9617N/Ano
Q6F3F1METK4_ATRNU2, ., 5, ., 1, ., 60.88800.98190.9595N/Ano
Q9FUZ1METK2_BRAJU2, ., 5, ., 1, ., 60.90580.98440.9694N/Ano
P17562METK2_ARATH2, ., 5, ., 1, ., 60.91850.98440.9694yesno
P23686METK1_ARATH2, ., 5, ., 1, ., 60.92360.98440.9694yesno
A4ULF8METK_MEDFA2, ., 5, ., 1, ., 60.89970.97410.9520N/Ano
P93438METK2_ORYSJ2, ., 5, ., 1, ., 60.90810.97930.9619nono
A7L2Z6METK_GOSHI2, ., 5, ., 1, ., 60.90330.98440.9694N/Ano
Q0DKY4METK1_ORYSJ2, ., 5, ., 1, ., 60.89560.98440.9621nono
Q6GV10METK_SOLBR2, ., 5, ., 1, ., 60.91320.98190.9669N/Ano
A9P822METK1_POPTR2, ., 5, ., 1, ., 60.93630.98190.9693yesno
Q4H1G3METK2_BETVU2, ., 5, ., 1, ., 60.92560.97670.9618N/Ano
Q4H1G4METK1_BETVU2, ., 5, ., 1, ., 60.88800.98190.9595N/Ano
Q944U4METK_DENCR2, ., 5, ., 1, ., 60.89640.98960.9696N/Ano
Q9AT55METK2_ELAUM2, ., 5, ., 1, ., 60.91850.98440.9694N/Ano
Q9AT56METK1_ELAUM2, ., 5, ., 1, ., 60.92110.98440.9694N/Ano
Q307Y9METK1_SOLTU2, ., 5, ., 1, ., 60.92090.98190.9669N/Ano
Q9FPL6METK2_SUASA2, ., 5, ., 1, ., 60.89560.98440.9645N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer2.5.1.60.993
3rd Layer2.5.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
METK1
RecName- Full=S-adenosylmethionine synthetase; EC=2.5.1.6;; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (By similarity) (393 aa)
(Populus trichocarpa)
Predicted Functional Partners:
HMT2
homocysteine s-methyltransferase (EC-2.1.1.10) (338 aa)
     •• 0.926
HMT3
homocysteine s-methyltransferase (EC-2.1.1.10) (327 aa)
     •• 0.926
HMT1
homocysteine s-methyltransferase (EC-2.1.1.10) (332 aa)
     •• 0.926
HMT5
homocysteine s-methyltransferase (EC-2.1.1.10) (341 aa)
     •• 0.926
HMT4
homocysteine s-methyltransferase (EC-2.1.1.10) (330 aa)
     •• 0.926
MS1
SubName- Full=Putative uncharacterized protein; (766 aa)
   • •• 0.917
MS2
SubName- Full=Putative uncharacterized protein; (766 aa)
   • •• 0.917
MS3
SubName- Full=Putative uncharacterized protein; (766 aa)
   • •• 0.917
eugene3.00031777
methionine gamma-lyase (EC-4.4.1.11) (417 aa)
     •• 0.903
fgenesh4_pg.C_LG_III001784
methionine gamma-lyase (EC-4.4.1.11) (417 aa)
     •• 0.902

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
PLN02243386 PLN02243, PLN02243, S-adenosylmethionine synthase 0.0
PTZ00104398 PTZ00104, PTZ00104, S-adenosylmethionine synthase; 0.0
PRK05250384 PRK05250, PRK05250, S-adenosylmethionine synthetas 0.0
COG0192388 COG0192, MetK, S-adenosylmethionine synthetase [Co 0.0
TIGR01034377 TIGR01034, metK, S-adenosylmethionine synthetase 0.0
PRK12459386 PRK12459, PRK12459, S-adenosylmethionine synthetas 1e-180
pfam02773138 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine s 2e-74
pfam02772119 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine s 5e-74
pfam00438100 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine s 1e-62
>gnl|CDD|177886 PLN02243, PLN02243, S-adenosylmethionine synthase Back     alignment and domain information 
 Score =  814 bits (2103), Expect = 0.0
 Identities = 352/386 (91%), Positives = 361/386 (93%), Gaps = 12/386 (3%)

Query: 7   METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTK 66
           METFLFTSESVNEGHPDKLCDQISDAVLDACL QDP+SKVACETCTKTNMVMVFGEITTK
Sbjct: 1   METFLFTSESVNEGHPDKLCDQISDAVLDACLAQDPDSKVACETCTKTNMVMVFGEITTK 60

Query: 67  AKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGA 126
           AKVDYEKIVRDTCR IGFVSDDVGLDAD CKVLVNIEQQSPDIAQGVHGH TK+PE+IGA
Sbjct: 61  AKVDYEKIVRDTCREIGFVSDDVGLDADKCKVLVNIEQQSPDIAQGVHGHLTKKPEEIGA 120

Query: 127 GDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDN 186
           GDQGHMFGYATDET E MPL+HVLATKLGARLTEVRKN TC WLRPDGKTQVTVEY N+ 
Sbjct: 121 GDQGHMFGYATDETPELMPLTHVLATKLGARLTEVRKNGTCPWLRPDGKTQVTVEYKNEG 180

Query: 187 GAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 246
           GAMVP+RVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI
Sbjct: 181 GAMVPIRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI 240

Query: 247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLAR 306
           GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKS+VA GLAR
Sbjct: 241 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLAR 300

Query: 307 RCIVQVSYAIGVPEPLSVF------------EILKIVKESFDFRPGMMTINLDLKRGGNG 354
           RCIVQVSYAIGVPEPLSVF            EILKIVKE+FDFRPGM+ INLDLKRGGNG
Sbjct: 301 RCIVQVSYAIGVPEPLSVFVDTYGTGKIPDKEILKIVKENFDFRPGMIAINLDLKRGGNG 360

Query: 355 RFLKTAAYGHFGRDDPDFTWEVVKPL 380
           RF KTAAYGHFGRDDPDFTWEVVKPL
Sbjct: 361 RFQKTAAYGHFGRDDPDFTWEVVKPL 386

Length = 386
>gnl|CDD|240268 PTZ00104, PTZ00104, S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>gnl|CDD|235374 PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>gnl|CDD|223270 COG0192, MetK, S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|233241 TIGR01034, metK, S-adenosylmethionine synthetase Back     alignment and domain information
>gnl|CDD|237106 PRK12459, PRK12459, S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>gnl|CDD|111646 pfam02773, S-AdoMet_synt_C, S-adenosylmethionine synthetase, C-terminal domain Back     alignment and domain information
>gnl|CDD|217221 pfam02772, S-AdoMet_synt_M, S-adenosylmethionine synthetase, central domain Back     alignment and domain information
>gnl|CDD|201226 pfam00438, S-AdoMet_synt_N, S-adenosylmethionine synthetase, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
COG0192388 MetK S-adenosylmethionine synthetase [Coenzyme met 100.0
PLN02243386 S-adenosylmethionine synthase 100.0
PTZ00104398 S-adenosylmethionine synthase; Provisional 100.0
PRK05250384 S-adenosylmethionine synthetase; Validated 100.0
PRK12459386 S-adenosylmethionine synthetase; Provisional 100.0
TIGR01034377 metK S-adenosylmethionine synthetase. Tandem isozy 100.0
KOG1506383 consensus S-adenosylmethionine synthetase [Coenzym 100.0
PF02773138 S-AdoMet_synt_C: S-adenosylmethionine synthetase, 100.0
PF02772120 S-AdoMet_synt_M: S-adenosylmethionine synthetase, 100.0
PF00438100 S-AdoMet_synt_N: S-adenosylmethionine synthetase, 100.0
PRK04439399 S-adenosylmethionine synthetase; Provisional 98.8
PF01941396 AdoMet_Synthase: S-adenosylmethionine synthetase ( 98.72
COG1812400 MetK Archaeal S-adenosylmethionine synthetase [Ami 97.84
>COG0192 MetK S-adenosylmethionine synthetase [Coenzyme metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-182  Score=1329.29  Aligned_cols=368  Identities=60%  Similarity=0.983  Sum_probs=357.9

Q ss_pred             ccceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhCCCC
Q 016575            7 METFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIGFVS   86 (387)
Q Consensus         7 ~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IGY~~   86 (387)
                      .+.+|||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++++|++|++|||++
T Consensus         2 ~~~~lFTSESVseGHPDKi~DqISDaILD~~L~~Dp~srVAcEt~v~tg~v~i~GEitt~~~vd~~~~~r~~I~~IGY~~   81 (388)
T COG0192           2 KKYFLFTSESVSEGHPDKICDQISDAILDAILKQDPNSRVACETLVTTGLVVIAGEITTSAYVDIVNIARKTIKEIGYTE   81 (388)
T ss_pred             CccceeeeccccCCCChHHHHHHhHHHHHHHHhcCCCceEEEEEEEecCeEEEEEEEecCccccHHHHHHHHHHHhCCCc
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHHcCC
Q 016575           87 DDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNST  166 (387)
Q Consensus        87 ~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk~g~  166 (387)
                      +++|||++||.|+++|++|||||+|||++.. +..+++|||||||||||||||||+||||||+|||+|++||+++||+|+
T Consensus        82 ~~~Gfd~~t~~vl~~i~~QSpDIaqgVd~~~-~~~~~~GAGDQGimFGyA~~ET~~lMPlpI~lAH~l~~r~a~~Rk~g~  160 (388)
T COG0192          82 SDYGFDAKTCAVLVAIGEQSPDIAQGVDEAD-EELDEIGAGDQGIMFGYACNETPELMPLPISLAHRLLRRLAEVRKNGE  160 (388)
T ss_pred             cccCcCccceEEEeecccCChhHHHhhhhcc-cchhhcCCCcceeEeeeecCCcccccChHHHHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999743 245689999999999999999999999999999999999999999999


Q ss_pred             CCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCCeEE
Q 016575          167 CSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVI  246 (387)
Q Consensus       167 ~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~Fvi  246 (387)
                      +||||||+||||||+|++ ++  +|++|++||+|+||++++++++||+.++|+||+|++|+++++++|+|+|||||||||
T Consensus       161 l~~LrpD~KsQVtv~Y~~-~~--~p~~idtIvvStQH~~~i~~~~l~~~v~e~iI~pv~~~~~l~~~tk~~INPtGrFVi  237 (388)
T COG0192         161 LPWLRPDAKSQVTVEYED-NG--KPVRIDTIVVSTQHDPDISQEQLREDVIEEIIKPVLPEELLDDKTKYFINPTGRFVI  237 (388)
T ss_pred             CcccCCCcceeEEEEEcC-CC--CceeEEEEEEEeccCcccCHHHHHHHHHHHHHhhhccHhhcCcCceEEECCCCCeee
Confidence            999999999999999986 35  899999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH-
Q 016575          247 GGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF-  325 (387)
Q Consensus       247 GGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~-  325 (387)
                      |||+||||||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+|+|+||+ 
T Consensus       238 GGP~gD~GLTGRKIIVDTYGG~a~HGGGAFSGKDptKVDRSaAYaARyvAKNiVAAglA~~ceVQlsYAIGva~PvSi~V  317 (388)
T COG0192         238 GGPQGDAGLTGRKIIVDTYGGYARHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLADRCEVQLSYAIGVAEPVSISV  317 (388)
T ss_pred             CCCCccccCccceEEEEcCCCccCCCCccCCCCCCcccchHHHHHHHHHHHHHHHhhhhhheEEEEEeEecccCceEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             -----------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCc
Q 016575          326 -----------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW  382 (387)
Q Consensus       326 -----------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~  382 (387)
                                 +|.++|+++|||||++||+.|+|++|   ||++||+||||||++ +|||||+|+++.
T Consensus       318 dtfgT~kvse~~i~~~v~~~FdlrP~gIi~~LdL~~p---iY~~tAaYGHFGr~~-~~pWEk~dkv~~  381 (388)
T COG0192         318 DTFGTGKVSEEKIEEAVRKVFDLRPAGIIKMLDLLRP---IYRKTAAYGHFGRED-DFPWEKLDKVDE  381 (388)
T ss_pred             EccCCcccCHHHHHHHHHHhcCCCHHHHHHHhccCCc---cchhcccccccCCCC-CCCccchhhHHH
Confidence                       89999999999999999999999999   999999999999987 899999999864

>PLN02243 S-adenosylmethionine synthase Back     alignment and domain information
>PTZ00104 S-adenosylmethionine synthase; Provisional Back     alignment and domain information
>PRK05250 S-adenosylmethionine synthetase; Validated Back     alignment and domain information
>PRK12459 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>TIGR01034 metK S-adenosylmethionine synthetase Back     alignment and domain information
>KOG1506 consensus S-adenosylmethionine synthetase [Coenzyme transport and metabolism] Back     alignment and domain information
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PF00438 S-AdoMet_synt_N: S-adenosylmethionine synthetase, N-terminal domain; InterPro: IPR022628 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold Back     alignment and domain information
>PRK04439 S-adenosylmethionine synthetase; Provisional Back     alignment and domain information
>PF01941 AdoMet_Synthase: S-adenosylmethionine synthetase (AdoMet synthetase); InterPro: IPR002795 A highly diverged class of S-adenosylmethionine synthetases have been identified in the archaea Back     alignment and domain information
>COG1812 MetK Archaeal S-adenosylmethionine synthetase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
2p02_A396 Crystal Structure Of The Alpha Subunit Of Human S- 1e-130
2obv_A384 Crystal Structure Of The Human S-adenosylmethionine 1e-123
1qm4_A396 Methionine Adenosyltransferase Complexed With A L-M 1e-123
3so4_A415 Methionine-Adenosyltransferase From Entamoeba Histo 1e-117
1fug_A383 S-adenosylmethionine Synthetase Length = 383 1e-102
1xrb_A383 S-adenosylmethionine Synthetase (mat, Atp: L-methio 3e-99
3iml_A399 Crystal Structure Of S-Adenosylmethionine Synthetas 6e-97
3s82_A407 Structure Of A S-Adenosylmethionine Synthetase From 3e-93
3rv2_A407 Crystal Structure Of S-Adenosylmethionine Synthetas 4e-91
3tde_A408 Crystal Structure Of S-Adenosylmethionine Synthetas 6e-90
>pdb|2P02|A Chain A, Crystal Structure Of The Alpha Subunit Of Human S- Adenosylmethionine Synthetase 2 Length = 396 Back     alignment and structure 
Iteration: 1

 Score =  461 bits (1185), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/386 (60%), Positives = 279/386 (72%), Gaps = 19/386 (4%)
Query: 9   TFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAK 68
           TFLFTSESV EGHPDK+CDQISDAVLDA L+QDP++KVACET  KT M+++ GEIT++A 
Sbjct: 18  TFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVAKTGMILLAGEITSRAA 77
Query: 69  VDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGD 128
           VDY+K+VR+  + IG+     G D   C VLV +EQQSPDIAQGVH    +  EDIGAGD
Sbjct: 78  VDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQGVH--LDRNEEDIGAGD 135
Query: 129 QGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYNDNGA 188
           QG MFGYATDET E MPL+ VLA KL A+L E+R+N T  WLRPD KTQVTV+Y  D GA
Sbjct: 136 QGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDSKTQVTVQYMQDRGA 195
Query: 189 MVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFVIGG 248
           ++P+RVHT++IS QHDE V  DE+   LKE VIK V+P KYLDE TI+HL PSGRFVIGG
Sbjct: 196 VLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDTIYHLQPSGRFVIGG 255
Query: 249 PHGDAGLTGRKIIIDTYXXXXXXXXXXXXXKDPTKVDRSGAYIVRQAAKSIVANGLARRC 308
           P GDAGLTGRKII+DTY             KD TKVDRS AY  R  AKS+V  GL RR 
Sbjct: 256 PQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRV 315
Query: 309 IVQVSYAIGVPEPLSVF------------EILKIVKESFDFRPGMMTINLDLKRGGNGRF 356
           +VQVSYAIGV  PLS+             E+L+IVK++FD RPG++  +LDLK+     +
Sbjct: 316 LVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK---PIY 372
Query: 357 LKTAAYGHFGRDDPDFTWEVVKPLKW 382
            +TAAYGHFGRD   F WEV K LK+
Sbjct: 373 QRTAAYGHFGRD--SFPWEVPKKLKY 396
>pdb|2OBV|A Chain A, Crystal Structure Of The Human S-adenosylmethionine Synthetase 1 In Complex With The Product Length = 384 Back     alignment and structure
>pdb|1QM4|A Chain A, Methionine Adenosyltransferase Complexed With A L-Methionine Analogous Length = 396 Back     alignment and structure
>pdb|3SO4|A Chain A, Methionine-Adenosyltransferase From Entamoeba Histolytica Length = 415 Back     alignment and structure
>pdb|1FUG|A Chain A, S-adenosylmethionine Synthetase Length = 383 Back     alignment and structure
>pdb|1XRB|A Chain A, S-adenosylmethionine Synthetase (mat, Atp: L-methionine S- Adenosyltransferase, E.c.2.5.1.6) In Which Met Residues Are Replaced With Selenomethionine Residues (mse) Length = 383 Back     alignment and structure
>pdb|3IML|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Burkholderia Pseudomallei Length = 399 Back     alignment and structure
>pdb|3S82|A Chain A, Structure Of A S-Adenosylmethionine Synthetase From Mycobacterium Avium Length = 407 Back     alignment and structure
>pdb|3RV2|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase From Mycobacterium Marinum Length = 407 Back     alignment and structure
>pdb|3TDE|A Chain A, Crystal Structure Of S-Adenosylmethionine Synthetase Rv1392 From Mycobacterium Tuberculosis Length = 408 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
3so4_A415 Methionine-adenosyltransferase; structural genomic 0.0
2p02_A396 S-adenosylmethionine synthetase isoform type-2; st 0.0
3iml_A399 S-adenosylmethionine synthetase; structural genomi 0.0
3s82_A407 S-adenosylmethionine synthase; seattle structural 0.0
1p7l_A383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 0.0
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Length = 415 Back     alignment and structure
 Score =  719 bits (1859), Expect = 0.0
 Identities = 228/388 (58%), Positives = 276/388 (71%), Gaps = 17/388 (4%)

Query: 6   KMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITT 65
               F FTSESV+ GHPDK+CDQISDA+LDACL QDP+S VACET TKT +++V GEITT
Sbjct: 19  PGSRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITT 78

Query: 66  KAKVDYEKIVRDTCRSIGFVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIG 125
            A +D  KIVR   +SIG+   + G D   C VL  +EQQS DIA+GVH    K+ EDIG
Sbjct: 79  NAVIDIPKIVRGVVKSIGYDDTNKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIG 136

Query: 126 AGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRKNSTCSWLRPDGKTQVTVEYYND 185
           AGDQG MFGYATDE+ E MPL+HVL+TKL  RL E R+     WLRPD K+QVT+EY   
Sbjct: 137 AGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECREKGILPWLRPDSKSQVTLEYEEV 196

Query: 186 NGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGRFV 245
            G + P+RVHT++ISTQH + V+N+EIA  L+E V + VIP++ +D+K + + NPSGRFV
Sbjct: 197 EGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGRFV 256

Query: 246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 305
           IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKD +KVDRSGAY  R  AKS+V  GL 
Sbjct: 257 IGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLC 316

Query: 306 RRCIVQVSYAIGVPEPLSVF------------EILKIVKESFDFRPGMMTINLDLKRGGN 353
            R +VQ+SYAIGV  PLS+              ++ IV ++FD RPGM+   L L R   
Sbjct: 317 HRVLVQLSYAIGVSHPLSINVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTR--- 373

Query: 354 GRFLKTAAYGHFGRDDPDFTWEVVKPLK 381
             F KTA  GHFGR+DPDF WE  K L+
Sbjct: 374 PIFQKTAVGGHFGRNDPDFKWEFPKELE 401
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Length = 396 Back     alignment and structure
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Length = 399 Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Length = 407 Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Length = 383 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
3so4_A415 Methionine-adenosyltransferase; structural genomic 100.0
3iml_A399 S-adenosylmethionine synthetase; structural genomi 100.0
3s82_A407 S-adenosylmethionine synthase; seattle structural 100.0
2p02_A396 S-adenosylmethionine synthetase isoform type-2; st 100.0
1p7l_A383 S-adenosylmethionine synthetase; AMPPNP, SAM, tran 100.0
4hpv_A407 S-adenosylmethionine synthase; structural genomics 98.28
>3so4_A Methionine-adenosyltransferase; structural genomics, medical structural genomics of pathogen protozoa, MSGPP; 3.18A {Entamoeba histolytica} Back     alignment and structure
Probab=100.00  E-value=2.5e-186  Score=1373.35  Aligned_cols=375  Identities=61%  Similarity=0.991  Sum_probs=353.9

Q ss_pred             cccccceeeecccCCCCCChhhhhhhHHHHHHHHhhcCCCCeEEEEEEeeeCeEEEEEEeeeeeeccHHHHHHHHHHhhC
Q 016575            4 LDKMETFLFTSESVNEGHPDKLCDQISDAVLDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVDYEKIVRDTCRSIG   83 (387)
Q Consensus         4 ~~~~~~~lfTSESV~eGHPDKicDqISDaILDa~L~~Dp~arVA~E~~v~~~~v~i~GEitt~a~vd~~~ivR~~i~~IG   83 (387)
                      +.++++||||||||+|||||||||||||||||+||+|||+|||||||++++|+|+|+|||||+++||+++|||++|++||
T Consensus        17 ~~~~~~~lFTSESVseGHPDKicDqISDAILDa~L~qDp~arVAcEt~vttg~V~v~GEItt~a~vD~~~ivR~~ik~IG   96 (415)
T 3so4_A           17 QGPGSRFFFTSESVSGGHPDKMCDQISDAILDACLAQDPKSHVACETATKTGLILVLGEITTNAVIDIPKIVRGVVKSIG   96 (415)
T ss_dssp             -----CEEEEEEEECTTSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEECSSEEEEEEEEECSCCCCHHHHHHHHHHHHT
T ss_pred             hhcccceeEeeccccCCCChHHHhhHhHHHHHHHHhcCCCCcEEEEEEeecCeEEEEEEEecccccCHHHHHHHHHhccC
Confidence            34556799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCceEEEEeeccCChhhhcccCCCCCCCCCCCCCCcceeeeeeecCCCCCCCCcHHHHHHHHHHHHHHHHH
Q 016575           84 FVSDDVGLDADHCKVLVNIEQQSPDIAQGVHGHFTKRPEDIGAGDQGHMFGYATDETSEFMPLSHVLATKLGARLTEVRK  163 (387)
Q Consensus        84 Y~~~~~gfd~~~~~v~~~i~~QS~dIa~gV~~~~~~~~~~~GAGDQGimfGYA~~ET~~~MPl~i~lAh~L~~~l~~~Rk  163 (387)
                      |+++++|||++||+|+++|++|||||+|||+.+  +..+++|||||||||||||||||+||||||+|||+|++||+++||
T Consensus        97 Y~~~~~gFd~~tc~Vl~~i~~QSpDIaqGVd~~--~~~~~~GAGDQGiMFGYAtdET~elMPlpi~lAH~L~~rla~~Rk  174 (415)
T 3so4_A           97 YDDTNKGFDYQTCSVLSCVEQQSQDIAKGVHVE--KKEEDIGAGDQGIMFGYATDESKEMMPLTHVLSTKLILRLQECRE  174 (415)
T ss_dssp             CEEGGGTEETTTCEEEEEEEEECCC-------------CCCCCSSCEEEEEEEETTSTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCccCCceEEEEecccCChhhhhccccc--cchhhcCCCcceeEEEEecCCCcccCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999963  234579999999999999999999999999999999999999999


Q ss_pred             cCCCCcccCCcceeEEEEEecCCCceeeeEEeEEEEeeecCCCCChHHHHHHHHHhhcccccCCCCCCCCcEEEECCCCC
Q 016575          164 NSTCSWLRPDGKTQVTVEYYNDNGAMVPVRVHTVLISTQHDETVTNDEIAADLKEHVIKPVIPEKYLDEKTIFHLNPSGR  243 (387)
Q Consensus       164 ~g~~~~l~pD~KtQVtv~Y~~~~g~~~p~rv~tivvS~QH~~~v~~~~l~~~i~e~Vi~~v~~~~~~~~~t~~~INPtG~  243 (387)
                      +|.+||||||+||||||+|++++|.++|+||+|||||+||++++++++|+++|+|+||++++|++|++++|+||||||||
T Consensus       175 ~g~l~~LrPD~KtQVTveY~~~~g~~~P~rv~tvViStQH~~~v~~~~l~~~i~e~VI~~vip~~~ld~~t~~~INPtGr  254 (415)
T 3so4_A          175 KGILPWLRPDSKSQVTLEYEEVEGHLKPIRVHTIVISTQHADNVSNEEIAKGLEEEVTQKVIPKELMDDKMLRYYNPSGR  254 (415)
T ss_dssp             HSSSTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHTHHHHSCTTTCCSSCEEEESTTCC
T ss_pred             cCCCCeeccCcceEEEEEEEcCCCCceeeEEEEEEEEEecCCCCCHHHHHHHHHHHHHHHhcCcccCCCCeEEEECCCCC
Confidence            99999999999999999998766778999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEcCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcch
Q 016575          244 FVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLS  323 (387)
Q Consensus       244 FviGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvs  323 (387)
                      ||||||+||+|||||||||||||||++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+|
T Consensus       255 FViGGP~gDaGLTGRKIIVDTYGG~~~HGGGAFSGKDptKVDRSaAYaAR~vAKniVAAGLA~rc~VQlsYAIGva~PvS  334 (415)
T 3so4_A          255 FVIGGPMGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDSSKVDRSGAYCARWIAKSLVHAGLCHRVLVQLSYAIGVSHPLS  334 (415)
T ss_dssp             CCSCTTTTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTSHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECTTCSSCSE
T ss_pred             eEECCCcccccccCceEEEEccCCcccCCCccccCCCccccccchhHHHHHHHHHHHHcCCcCeEEEEEEEeeccccceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH------------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCcC
Q 016575          324 VF------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKWE  383 (387)
Q Consensus       324 i~------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~~  383 (387)
                      |+            +|.++|+++|||||++||++|+|+||   ||++||+||||||++++||||++|+|++.
T Consensus       335 i~V~TfGT~~~~~~~i~~~v~~~FdlrP~~Ii~~L~L~~P---iY~~tAaYGHFGR~~~~f~WE~~d~l~~~  403 (415)
T 3so4_A          335 INVNTYGTGICDESILVDIVNKNFDMRPGMIIKELGLTRP---IFQKTAVGGHFGRNDPDFKWEFPKELEIP  403 (415)
T ss_dssp             EEEEECSCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CCTGGGSSCSSSCCCTTCTTSSCCCCCCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHHHhcCCCHHHHHHHcCCCCC---cchhhcccccCCCCCCCCCCcCCcccCCC
Confidence            98            89999999999999999999999999   99999999999999989999999999876
>3iml_A S-adenosylmethionine synthetase; structural genomics, ATP-BI cobalt, magnesium, metal-binding, nucleotide-binding, one-C metabolism; 2.35A {Burkholderia pseudomallei} Back     alignment and structure
>3s82_A S-adenosylmethionine synthase; seattle structural genomics center for infectious disease, S adenosylmethionine synthetase, transferase; 1.73A {Mycobacterium avium} PDB: 3tde_A 3rv2_A Back     alignment and structure
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Back     alignment and structure
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Back     alignment and structure
>4hpv_A S-adenosylmethionine synthase; structural genomics, PSI-biology; 2.21A {Sulfolobus solfataricus P2} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d2p02a3144 d.130.1.1 (A:274-417) S-adenosylmethionine synthet 6e-61
d1mxaa3152 d.130.1.1 (A:232-383) S-adenosylmethionine synthet 7e-57
d2p02a2126 d.130.1.1 (A:148-273) S-adenosylmethionine synthet 4e-56
d1mxaa2124 d.130.1.1 (A:108-231) S-adenosylmethionine synthet 5e-54
d2p02a1110 d.130.1.1 (A:38-147) S-adenosylmethionine syntheta 4e-51
d1mxaa1102 d.130.1.1 (A:1-102) S-adenosylmethionine synthetas 4e-46
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 144 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

 Score =  191 bits (486), Expect = 6e-61
 Identities = 93/149 (62%), Positives = 108/149 (72%), Gaps = 17/149 (11%)

Query: 246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLA 305
           IGGP GDAGLTGRKII+DTYGGWGAHGGGAFSGKD TKVDRS AY  R  AKS+V  GL 
Sbjct: 1   IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLC 60

Query: 306 RRCIVQVSYAIGVPEPLSVF------------EILKIVKESFDFRPGMMTINLDLKRGGN 353
           RR +VQVSYAIGV  PLS+             E+L+IVK++FD RPG++  +LDLK+   
Sbjct: 61  RRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKK--- 117

Query: 354 GRFLKTAAYGHFGRDDPDFTWEVVKPLKW 382
             + +TAAYGHFGRD   F WEV K LK+
Sbjct: 118 PIYQRTAAYGHFGRD--SFPWEVPKKLKY 144
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 152 Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Length = 102 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d2p02a3144 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa3152 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a2126 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa2124 S-adenosylmethionine synthetase {Escherichia coli 100.0
d2p02a1110 S-adenosylmethionine synthetase {Human (Homo sapie 100.0
d1mxaa1102 S-adenosylmethionine synthetase {Escherichia coli 100.0
>d2p02a3 d.130.1.1 (A:274-417) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: S-adenosylmethionine synthetase
superfamily: S-adenosylmethionine synthetase
family: S-adenosylmethionine synthetase
domain: S-adenosylmethionine synthetase
species: Human (Homo sapiens), isoform type-2 [TaxId: 9606]

Probab=100.00  E-value=2.6e-78  Score=532.43  Aligned_cols=132  Identities=70%  Similarity=1.192  Sum_probs=129.2

Q ss_pred             EcCCCCCcccCCceeEEeccCCccccccccCcCCCCCccchhhhhHHHHHHHHHHHhccccccEEEEEEeecCCCcchHH
Q 016575          246 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVF  325 (387)
Q Consensus       246 iGGP~~DtGLTGRKiiVDTYGg~~~HGGGAfSGKDptKVDRSaAY~AR~iAKniVaaGlA~~ceVqlsYAIGva~Pvsi~  325 (387)
                      ||||+|||||||||||||||||+++|||||||||||||||||||||||||||||||||||+|||||||||||+++|+||+
T Consensus         1 iGGp~~d~GlTGRKiivDtYGg~~~hGGGafsgKD~tKvDRSaAY~AR~iAKniVaaglA~~c~VQlsYAIGva~Pvsi~   80 (144)
T d2p02a3           1 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWVAKSLVKGGLCRRVLVQVSYAIGVSHPLSIS   80 (144)
T ss_dssp             SCGGGTSCEETTSCTTTTTTTTSSCCCSCCCTTBCTTCHHHHHHHHHHHHHHHHHHTTSCSEEEEEEEECBTCCSCSEEE
T ss_pred             CCCCccccCCccceEEEEcCCCccccCCcCCCCCceehhHHHHHHHHHHHHHHHHHhCCCCeeEEEEEeecCccccceEE
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ------------HHHHHHHHhcCCChhhhhhhcccCCCccccccccccccCCCCCCCCCCccccccCCc
Q 016575          326 ------------EILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEVVKPLKW  382 (387)
Q Consensus       326 ------------~i~~~i~~~Fdl~p~~Ii~~L~L~~p~~~iY~~tA~yGHFGr~~~~~pWE~~dk~~~  382 (387)
                                  +|.++|+++|||||++||++|+|++|   ||++||+||||||+  +||||++|++++
T Consensus        81 VdtfGT~~~~~~~i~~~I~~~FDl~P~~II~~L~L~~P---iY~~TAaYGHFGR~--~f~WEk~dkve~  144 (144)
T d2p02a3          81 IFHYGTSQKSERELLEIVKKNFDLRPGVIVRDLDLKKP---IYQRTAAYGHFGRD--SFPWEVPKKLKY  144 (144)
T ss_dssp             EECTTCCSSCHHHHHHHHHHHCCCCHHHHHHHHTTTSS---CGGGGSSSCSSSST--TCGGGSCCCCCC
T ss_pred             EEeCCCcccCHHHHHHHHHhccCCCHHHHHHHhCCCCC---cchhccCccCCCCC--CCCeeccccccC
Confidence                        79999999999999999999999999   99999999999997  599999999975
>d1mxaa3 d.130.1.1 (A:232-383) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a2 d.130.1.1 (A:148-273) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2p02a1 d.130.1.1 (A:38-147) S-adenosylmethionine synthetase {Human (Homo sapiens), isoform type-2 [TaxId: 9606]} Back     information, alignment and structure
>d1mxaa1 d.130.1.1 (A:1-102) S-adenosylmethionine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure