Citrus Sinensis ID: 016590

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGIRR
ccccccccccHHHHHHHHHHHHHcccccccccccccccHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHcccccccEEEEEEcccEEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHccccccccccccccHHHHHHHHHHHHcccEEEEEEEEEEEccccEEEEEEccccccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHcccccccccEEEEEEEEEccccccc
cHHHHHHHHHHHHHHHHHHccccccccccccHHccccHHHHHccccccHHHHHccccccHHHHHccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEccEEEEEEEEEccHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEEEEccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccEccHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHEHHHcEEccEEEEEHHHHHHHHHHHHccccEEEEEEEEEccccccc
macfrsakhpfriFFYNRLsaatnskygystcaskgtpvyqarQIKDLFsfkylnpkssFALISRnfsdqapaaTEQVNLIKQLREqtsapmkdVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVaenvsqpvsglfpvgpeyleglklnldhpkiggetTVQNAITEVAAIMGENVKLRRGFllsasspgvvstylhtspqsglgrIAGLLSLevedgsssfdplKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDnlskevgspvkigsFFRMEVGEGIRR
macfrsakhpfRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLReqtsapmkdVKLALVDCDWDIEAALKELRKrgkvlaskkssrtaTEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKsqaestgkspmaiEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILdnlskevgspvkigsffrmevgegirr
MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYlalalakqalvaENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGIRR
******AKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNF***********NLI***********KDVKLALVDCDWDIEAALKELR******************LLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEV**********KRVGSELAMHIVAQKPLFLTKELVSA**************************MVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRM********
*********P*RIFFYNR*************CASKGTPVYQARQIKDLFSF***NPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENERE*L************AIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGIR*
MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK**************TEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGIRR
MACFRSAKHPFRIFFYNRLSAA****************VYQ*R*IKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEG***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSFALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSxxxxxxxxxxxxxxxxxxxxxPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGIRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
B9SEZ6379 Elongation factor Ts, mit N/A no 0.945 0.963 0.709 1e-157
Q5XF75395 Elongation factor Ts, mit yes no 0.989 0.967 0.661 1e-145
Q6ZJS7366 Elongation factor Ts, mit yes no 0.945 0.997 0.601 1e-129
B4FHF0379 Elongation factor Ts, mit N/A no 0.823 0.839 0.677 1e-127
B8BAI9385 Elongation factor Ts, mit N/A no 0.834 0.836 0.663 1e-127
Q11IJ7307 Elongation factor Ts OS=M yes no 0.738 0.928 0.422 4e-58
Q9XCM5307 Elongation factor Ts OS=B yes no 0.738 0.928 0.395 4e-56
Q6G5C8307 Elongation factor Ts OS=B yes no 0.738 0.928 0.398 1e-55
Q2RU08309 Elongation factor Ts OS=R yes no 0.735 0.919 0.422 5e-55
P64049305 Elongation factor Ts OS=B yes no 0.738 0.934 0.399 1e-54
>sp|B9SEZ6|EFTS_RICCO Elongation factor Ts, mitochondrial OS=Ricinus communis GN=EFTS PE=3 SV=1 Back     alignment and function desciption
 Score =  554 bits (1428), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/386 (70%), Positives = 318/386 (82%), Gaps = 21/386 (5%)

Query: 1   MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSF 60
           MA +R+A+ P ++  ++RL    N +  YS+ A K                     +S+F
Sbjct: 1   MALYRTARRPLQMMLFSRLG---NPEQNYSSWARKDAS------------------QSAF 39

Query: 61  ALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVL 120
            +  R FS  APAA EQ++LIKQLRE+TSAP+KDVK +LVDC+WDIEAA K+LRKRGKVL
Sbjct: 40  GMFVRLFSAHAPAAAEQMSLIKQLRERTSAPIKDVKASLVDCNWDIEAAQKDLRKRGKVL 99

Query: 121 ASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQ 180
           ASKKS R ATEGLLALAQNE KAA+IELNCETDFV+RN+IFQ LAL+LAKQAL+ EN +Q
Sbjct: 100 ASKKSGRAATEGLLALAQNEGKAALIELNCETDFVARNDIFQCLALSLAKQALLTENTAQ 159

Query: 181 PVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPG 240
             SG+ PVGPE LE L +NL+HPKI GETTVQNAITEVAA+MGENVKLRRGF++S S PG
Sbjct: 160 QASGIHPVGPECLEDLMINLEHPKISGETTVQNAITEVAAMMGENVKLRRGFVMSTSLPG 219

Query: 241 VVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVS 300
           V+STYLHTSPQ GLGRIAGLLSLE+EDG+S  D L  VGSELAMH+VA KPLFLTKELVS
Sbjct: 220 VLSTYLHTSPQPGLGRIAGLLSLEIEDGNSQLDVLHHVGSELAMHVVAAKPLFLTKELVS 279

Query: 301 ADALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILD 360
           +DALE+EREILKSQAESTGKS MAIEKMVEGRLRKYYEEVVLMEQKF++ND +N+KT+L+
Sbjct: 280 SDALESEREILKSQAESTGKSQMAIEKMVEGRLRKYYEEVVLMEQKFIINDAVNVKTVLN 339

Query: 361 NLSKEVGSPVKIGSFFRMEVGEGIRR 386
           NLSKEVGSPVKIGSFFRMEVGEGI+R
Sbjct: 340 NLSKEVGSPVKIGSFFRMEVGEGIQR 365
Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF-Tu.GTP complex up to the GTP hydrolysis stage on the ribosome.
Ricinus communis (taxid: 3988)
>sp|Q5XF75|EFTS_ARATH Elongation factor Ts, mitochondrial OS=Arabidopsis thaliana GN=EFTS PE=2 SV=1 Back     alignment and function description
>sp|Q6ZJS7|EFTS_ORYSJ Elongation factor Ts, mitochondrial OS=Oryza sativa subsp. japonica GN=EFTS PE=2 SV=1 Back     alignment and function description
>sp|B4FHF0|EFTS_MAIZE Elongation factor Ts, mitochondrial OS=Zea mays GN=EFTS PE=2 SV=1 Back     alignment and function description
>sp|B8BAI9|EFTS_ORYSI Elongation factor Ts, mitochondrial OS=Oryza sativa subsp. indica GN=EFTS PE=3 SV=2 Back     alignment and function description
>sp|Q11IJ7|EFTS_MESSB Elongation factor Ts OS=Mesorhizobium sp. (strain BNC1) GN=tsf PE=3 SV=1 Back     alignment and function description
>sp|Q9XCM5|EFTS_BARQU Elongation factor Ts OS=Bartonella quintana (strain Toulouse) GN=tsf PE=3 SV=2 Back     alignment and function description
>sp|Q6G5C8|EFTS_BARHE Elongation factor Ts OS=Bartonella henselae (strain ATCC 49882 / Houston 1) GN=tsf PE=3 SV=1 Back     alignment and function description
>sp|Q2RU08|EFTS_RHORT Elongation factor Ts OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=tsf PE=3 SV=1 Back     alignment and function description
>sp|P64049|EFTS_BRUSU Elongation factor Ts OS=Brucella suis biovar 1 (strain 1330) GN=tsf PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
255567168379 elongation factor ts, putative [Ricinus 0.945 0.963 0.709 1e-155
297809333394 hypothetical protein ARALYDRAFT_489950 [ 0.989 0.969 0.663 1e-145
449445955401 PREDICTED: elongation factor Ts, mitocho 0.997 0.960 0.672 1e-144
224129270323 predicted protein [Populus trichocarpa] 0.800 0.956 0.812 1e-143
42566427395 putative translation elongation factor T 0.989 0.967 0.661 1e-143
225445569378 PREDICTED: elongation factor Ts, mitocho 0.943 0.962 0.665 1e-139
3600047398 similar to elongation factor EF-Ts [Arab 0.976 0.947 0.635 1e-136
350539363391 ethylene-responsive elongation factor EF 0.976 0.964 0.665 1e-132
4850291415 putative translation elongation factor t 0.976 0.908 0.609 1e-132
115476306366 Os08g0399600 [Oryza sativa Japonica Grou 0.945 0.997 0.601 1e-127
>gi|255567168|ref|XP_002524565.1| elongation factor ts, putative [Ricinus communis] gi|313118247|sp|B9SEZ6.1|EFTS_RICCO RecName: Full=Elongation factor Ts, mitochondrial; Short=EF-Ts; Short=EF-TsMt; Flags: Precursor gi|223536118|gb|EEF37773.1| elongation factor ts, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  554 bits (1428), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 274/386 (70%), Positives = 318/386 (82%), Gaps = 21/386 (5%)

Query: 1   MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSF 60
           MA +R+A+ P ++  ++RL    N +  YS+ A K                     +S+F
Sbjct: 1   MALYRTARRPLQMMLFSRLG---NPEQNYSSWARKDAS------------------QSAF 39

Query: 61  ALISRNFSDQAPAATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVL 120
            +  R FS  APAA EQ++LIKQLRE+TSAP+KDVK +LVDC+WDIEAA K+LRKRGKVL
Sbjct: 40  GMFVRLFSAHAPAAAEQMSLIKQLRERTSAPIKDVKASLVDCNWDIEAAQKDLRKRGKVL 99

Query: 121 ASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQ 180
           ASKKS R ATEGLLALAQNE KAA+IELNCETDFV+RN+IFQ LAL+LAKQAL+ EN +Q
Sbjct: 100 ASKKSGRAATEGLLALAQNEGKAALIELNCETDFVARNDIFQCLALSLAKQALLTENTAQ 159

Query: 181 PVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPG 240
             SG+ PVGPE LE L +NL+HPKI GETTVQNAITEVAA+MGENVKLRRGF++S S PG
Sbjct: 160 QASGIHPVGPECLEDLMINLEHPKISGETTVQNAITEVAAMMGENVKLRRGFVMSTSLPG 219

Query: 241 VVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVS 300
           V+STYLHTSPQ GLGRIAGLLSLE+EDG+S  D L  VGSELAMH+VA KPLFLTKELVS
Sbjct: 220 VLSTYLHTSPQPGLGRIAGLLSLEIEDGNSQLDVLHHVGSELAMHVVAAKPLFLTKELVS 279

Query: 301 ADALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILD 360
           +DALE+EREILKSQAESTGKS MAIEKMVEGRLRKYYEEVVLMEQKF++ND +N+KT+L+
Sbjct: 280 SDALESEREILKSQAESTGKSQMAIEKMVEGRLRKYYEEVVLMEQKFIINDAVNVKTVLN 339

Query: 361 NLSKEVGSPVKIGSFFRMEVGEGIRR 386
           NLSKEVGSPVKIGSFFRMEVGEGI+R
Sbjct: 340 NLSKEVGSPVKIGSFFRMEVGEGIQR 365

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297809333|ref|XP_002872550.1| hypothetical protein ARALYDRAFT_489950 [Arabidopsis lyrata subsp. lyrata] gi|297318387|gb|EFH48809.1| hypothetical protein ARALYDRAFT_489950 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449445955|ref|XP_004140737.1| PREDICTED: elongation factor Ts, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224129270|ref|XP_002320543.1| predicted protein [Populus trichocarpa] gi|222861316|gb|EEE98858.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42566427|ref|NP_192850.2| putative translation elongation factor Ts [Arabidopsis thaliana] gi|75287865|sp|Q5XF75.1|EFTS_ARATH RecName: Full=Elongation factor Ts, mitochondrial; Short=EF-Ts; Short=EF-TsMt; Flags: Precursor gi|52627103|gb|AAU84678.1| At4g11120 [Arabidopsis thaliana] gi|55167888|gb|AAV43776.1| At4g11120 [Arabidopsis thaliana] gi|332657575|gb|AEE82975.1| putative translation elongation factor Ts [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225445569|ref|XP_002282316.1| PREDICTED: elongation factor Ts, mitochondrial [Vitis vinifera] gi|297738982|emb|CBI28227.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|3600047|gb|AAC35534.1| similar to elongation factor EF-Ts [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|350539363|ref|NP_001234645.1| ethylene-responsive elongation factor EF-Ts precursor [Solanum lycopersicum] gi|5669636|gb|AAD46403.1|AF096247_1 ethylene-responsive elongation factor EF-Ts precursor [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|4850291|emb|CAB43047.1| putative translation elongation factor ts [Arabidopsis thaliana] gi|7267811|emb|CAB81213.1| putative translation elongation factor ts [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|115476306|ref|NP_001061749.1| Os08g0399600 [Oryza sativa Japonica Group] gi|75294316|sp|Q6ZJS7.1|EFTS_ORYSJ RecName: Full=Elongation factor Ts, mitochondrial; Short=EF-Ts; Short=EF-TsMt; Flags: Precursor gi|37805964|dbj|BAC99379.1| putative ethylene-responsive elongation factor EF-Ts precursor [Oryza sativa Japonica Group] gi|113623718|dbj|BAF23663.1| Os08g0399600 [Oryza sativa Japonica Group] gi|215701316|dbj|BAG92740.1| unnamed protein product [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
TAIR|locus:2136158395 AT4G11120 [Arabidopsis thalian 0.989 0.967 0.640 8.9e-125
TIGR_CMR|ECH_0515288 ECH_0515 "translation elongati 0.497 0.666 0.323 3.2e-43
TIGR_CMR|SPO_1975291 SPO_1975 "translation elongati 0.419 0.556 0.327 2e-38
TIGR_CMR|BA_3964295 BA_3964 "translation elongatio 0.409 0.535 0.357 2.3e-38
UNIPROTKB|Q9KPV3280 tsf "Elongation factor Ts" [Vi 0.282 0.389 0.428 7.7e-31
TIGR_CMR|VC_2259280 VC_2259 "elongation factor Ts" 0.282 0.389 0.428 7.7e-31
TIGR_CMR|CPS_1554282 CPS_1554 "translation elongati 0.212 0.290 0.414 1.7e-28
DICTYBASE|DDB_G0286399355 tsfm "elongation factor Ts" [D 0.779 0.847 0.261 1.9e-28
UNIPROTKB|P0A6P1283 tsf [Escherichia coli K-12 (ta 0.217 0.296 0.392 2.6e-27
TIGR_CMR|APH_0398287 APH_0398 "translation elongati 0.481 0.648 0.360 5.7e-27
TAIR|locus:2136158 AT4G11120 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
 Identities = 248/387 (64%), Positives = 303/387 (78%)

Query:     1 MACFRSAKHPFRIFFYNRLSAATNSKYGYSTCASKGTPVYQARQIKDLFSFKYLNPKSSF 60
             MA  R+ + P  +F+Y+ +S+  +S   YST ASK   +    Q K      Y +    F
Sbjct:     1 MAFARAVRRPIGVFYYS-VSSRFSSGNEYSTVASKFETL---SQYKSSVPSGYTSLVRGF 56

Query:    61 ALISRNFSDQAP-AATEQVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKV 119
                 R+FS +AP A ++Q++LIKQLRE+TSAP+KDVK +LV+C+WD+EAA K+LRKRGKV
Sbjct:    57 GNFIRSFSSEAPPAVSDQMSLIKQLRERTSAPIKDVKASLVECNWDLEAAQKDLRKRGKV 116

Query:   120 LASKKSSRTATEGLLALAQNESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVS 179
             LASKKSSRTA EG+LA+AQNE K AVIELNCETDFV+RNEIFQY            E+ S
Sbjct:   117 LASKKSSRTAAEGMLAVAQNEGKVAVIELNCETDFVARNEIFQYLALAMAKHALLVESSS 176

Query:   180 QPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSP 239
             Q VSG+FP GPE  E  KLNLDHPK+ GETTV NA+TEVAAIMGENVK RRGFL+S SS 
Sbjct:   177 QQVSGVFPFGPELFEEFKLNLDHPKVNGETTVSNAVTEVAAIMGENVKFRRGFLMSKSSA 236

Query:   240 GVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELV 299
             GV+S YLHTSPQ GLGRIAG++SLEVE  ++  + ++RVGSELAMH+VA KPLFL+K+LV
Sbjct:   237 GVLSAYLHTSPQPGLGRIAGIVSLEVEGENTQLEAIQRVGSELAMHVVAAKPLFLSKDLV 296

Query:   300 SADALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTIL 359
             S++A+ NEREILKSQAESTGK+ MAIEK+VEGRLRKY+EEV LMEQKF++ND +NIKT++
Sbjct:   297 SSEAMANEREILKSQAESTGKNQMAIEKIVEGRLRKYFEEVALMEQKFIVNDAINIKTLV 356

Query:   360 DNLSKEVGSPVKIGSFFRMEVGEGIRR 386
             DNLSKEVGSPVK+  F R+EVGEGI R
Sbjct:   357 DNLSKEVGSPVKVTDFLRVEVGEGIER 383
GO:0003746 "translation elongation factor activity" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006414 "translational elongation" evidence=IEA;ISS
TIGR_CMR|ECH_0515 ECH_0515 "translation elongation factor Ts" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1975 SPO_1975 "translation elongation factor Ts" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|BA_3964 BA_3964 "translation elongation factor Ts" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPV3 tsf "Elongation factor Ts" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2259 VC_2259 "elongation factor Ts" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_1554 CPS_1554 "translation elongation factor Ts" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286399 tsfm "elongation factor Ts" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6P1 tsf [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0398 APH_0398 "translation elongation factor Ts" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5XF75EFTS_ARATHNo assigned EC number0.66140.98960.9670yesno
Q6ZJS7EFTS_ORYSJNo assigned EC number0.60100.94550.9972yesno
B8BAI9EFTS_ORYSINo assigned EC number0.66360.83410.8363N/Ano
B4FHF0EFTS_MAIZENo assigned EC number0.67700.82380.8390N/Ano
B9SEZ6EFTS_RICCONo assigned EC number0.70980.94550.9630N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.6__3084__AT4G11120.1
annotation not avaliable (394 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.2__709__ATCG00160.1
annotation not avaliable (225 aa)
•  •  • 0.980
scaffold_503605.1
annotation not avaliable (275 aa)
•  •  • 0.970
fgenesh2_kg.2__2158__AT1G78630.1
annotation not avaliable (242 aa)
•  •  • 0.944
scaffold_302209.1
annotation not avaliable (334 aa)
•• •  • 0.944
scaffold_302207.1
annotation not avaliable (334 aa)
•• •  • 0.944
fgenesh2_kg.2__1766__AT1G74970.1
annotation not avaliable (208 aa)
•  •  • 0.933
fgenesh2_kg.2__207__AT1G62750.1
annotation not avaliable (782 aa)
•  •• • 0.923
fgenesh1_pg.C_scaffold_1061000001
annotation not avaliable (103 aa)
•  •  • 0.922
fgenesh2_kg.3__36__AT3G01790.2
annotation not avaliable (205 aa)
•  •  • 0.918
scaffold_303832.1
annotation not avaliable (297 aa)
•  •  • 0.901

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
PRK09377290 PRK09377, tsf, elongation factor Ts; Provisional 1e-90
COG0264296 COG0264, Tsf, Translation elongation factor Ts [Tr 1e-80
TIGR00116291 TIGR00116, tsf, translation elongation factor Ts 6e-57
PRK12332198 PRK12332, tsf, elongation factor Ts; Reviewed 1e-33
pfam00889134 pfam00889, EF_TS, Elongation factor TS 8e-32
PRK12332198 PRK12332, tsf, elongation factor Ts; Reviewed 6e-29
CHL00098200 CHL00098, tsf, elongation factor Ts 2e-24
pfam00889134 pfam00889, EF_TS, Elongation factor TS 2e-12
CHL00098200 CHL00098, tsf, elongation factor Ts 2e-10
pfam0062737 pfam00627, UBA, UBA/TS-N domain 0.002
>gnl|CDD|236491 PRK09377, tsf, elongation factor Ts; Provisional Back     alignment and domain information 
 Score =  274 bits (703), Expect = 1e-90
 Identities = 129/305 (42%), Positives = 177/305 (58%), Gaps = 38/305 (12%)

Query: 80  LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQN 139
           L+K+LRE+T A M D K AL + D DIE A++ LRK+G   A+KK+ R A EGL+A   +
Sbjct: 8   LVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAAKVD 67

Query: 140 ESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLN 199
            +K  ++E+N ETDFV++NE FQ LA  +A+ AL A              P  +E L   
Sbjct: 68  GNKGVLVEVNSETDFVAKNEDFQALANEVAEAALAA-------------KPADVEALL-- 112

Query: 200 LDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIAG 259
               K+ G  TV+ A TE+ A +GEN+ LRR   L     GVV +YLH     G GRI  
Sbjct: 113 --ALKLDGG-TVEEARTELIAKIGENISLRRFARLEKDG-GVVGSYLH-----GGGRIGV 163

Query: 260 LLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAESTG 319
           L++LE  D        + +  ++AMHI A  P +L++E V A+ +E EREI K QA+  G
Sbjct: 164 LVALEGGD--------EELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQAKEEG 215

Query: 320 KSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRME 379
           K    +EK+VEGRL K+ +EVVL+EQ FV +    +  +L    KE G+  K+  F R E
Sbjct: 216 KPEEIVEKIVEGRLNKFLKEVVLLEQPFVKDPKKTVGQLL----KEAGA--KVVGFVRFE 269

Query: 380 VGEGI 384
           VGEGI
Sbjct: 270 VGEGI 274

Length = 290
>gnl|CDD|223342 COG0264, Tsf, Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232832 TIGR00116, tsf, translation elongation factor Ts Back     alignment and domain information
>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed Back     alignment and domain information
>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS Back     alignment and domain information
>gnl|CDD|183447 PRK12332, tsf, elongation factor Ts; Reviewed Back     alignment and domain information
>gnl|CDD|214362 CHL00098, tsf, elongation factor Ts Back     alignment and domain information
>gnl|CDD|189759 pfam00889, EF_TS, Elongation factor TS Back     alignment and domain information
>gnl|CDD|214362 CHL00098, tsf, elongation factor Ts Back     alignment and domain information
>gnl|CDD|201355 pfam00627, UBA, UBA/TS-N domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
COG0264296 Tsf Translation elongation factor Ts [Translation, 100.0
TIGR00116290 tsf translation elongation factor Ts. This protein 100.0
PRK09377290 tsf elongation factor Ts; Provisional 100.0
PRK12332198 tsf elongation factor Ts; Reviewed 100.0
CHL00098200 tsf elongation factor Ts 100.0
PF00889221 EF_TS: Elongation factor TS; InterPro: IPR014039 T 100.0
KOG1071340 consensus Mitochondrial translation elongation fac 100.0
PF0062737 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA doma 98.35
KOG1071 340 consensus Mitochondrial translation elongation fac 98.29
PRK06369115 nac nascent polypeptide-associated complex protein 97.36
smart0016537 UBA Ubiquitin associated domain. Present in Rad23, 97.25
TIGR00264116 alpha-NAC-related protein. This hypothetical prote 97.23
cd0019438 UBA Ubiquitin Associated domain. The UBA domain is 97.15
COG0264 296 Tsf Translation elongation factor Ts [Translation, 96.4
TIGR00116 290 tsf translation elongation factor Ts. This protein 96.38
CHL00098200 tsf elongation factor Ts 96.35
PRK09377 290 tsf elongation factor Ts; Provisional 95.67
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 94.76
PF0394351 TAP_C: TAP C-terminal domain; InterPro: IPR005637 93.48
smart0080463 TAP_C C-terminal domain of vertebrate Tap protein. 93.05
PRK12332198 tsf elongation factor Ts; Reviewed 93.02
COG1308122 EGD2 Transcription factor homologous to NACalpha-B 92.36
PF00889 221 EF_TS: Elongation factor TS; InterPro: IPR014039 T 91.93
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 87.86
PF0054268 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal 85.78
PRK0677193 hypothetical protein; Provisional 82.14
smart0054643 CUE Domain that may be involved in binding ubiquit 81.56
PF0893879 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This 81.12
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2e-93  Score=687.38  Aligned_cols=274  Identities=42%  Similarity=0.621  Sum_probs=256.4

Q ss_pred             HHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHcccccccccccccccCCcEEEEecCC--eEEEEEEeccccce
Q 016590           78 VNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQNES--KAAVIELNCETDFV  155 (386)
Q Consensus        78 ~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRkkG~akA~Kka~R~a~EGlV~~~~~~~--~aalvElNCETDFV  155 (386)
                      +++||+||++||||||||||||+|++||+|+|++|||++|+++|+||+||.|+||+|+++++++  +|+|||||||||||
T Consensus         6 a~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETDFV   85 (296)
T COG0264           6 AALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETDFV   85 (296)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEeccccce
Confidence            6899999999999999999999999999999999999999999999999999999999999555  99999999999999


Q ss_pred             ecchHHHHHHHHHHHHHHhhcCCCCCCCCCCCCChhhhhccccCCCCCCCCCCCcHHHHHHHHHHHhcceeeeeeeEEee
Q 016590          156 SRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEGLKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLS  235 (386)
Q Consensus       156 ArN~~F~~la~~ia~~~l~~~~~~~~~~~~~~l~~e~l~~~~~~~~~~~~~~~~Tv~d~i~~~ia~iGENI~LrR~~~~~  235 (386)
                      |||+.|+.|++.|++.++.+...          +.+.+....+       +++.||++.+..++++|||||.|||+..+.
T Consensus        86 AkN~~F~~l~~~ia~~~l~~~~~----------~ve~l~~~~~-------~~~~tv~e~~~~~~AkIGENi~lRR~~~~~  148 (296)
T COG0264          86 AKNAEFQELANKIAKAALEKKPA----------DVEELKAAFE-------PGGKTVEEEIAALIAKIGENISLRRFAVLE  148 (296)
T ss_pred             eCChhHHHHHHHHHHHHHHhCcc----------cHHHHHhhhc-------ccCccHHHHHHHHHHHhccceeEEEEEEee
Confidence            99999999999999999988753          3467765543       357899999999999999999999999998


Q ss_pred             eCCCCeEEEEecCCCCCCCCcEEEEEEEeecCCCCCCchhhhHHHHHHHHhhhcCCcccccCCCCHHHHHHHHHHHHHHH
Q 016590          236 ASSPGVVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQA  315 (386)
Q Consensus       236 ~~~~~~v~sY~H~~~~~~~Gkig~LV~l~~~~~~~~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~~~le~Er~i~~~q~  315 (386)
                      .+ ++.+++|+|++     |||||||.++++.      ....++|+|||||||++|.||+.++||++++++||+|+.+|+
T Consensus       149 ~~-~~~v~~Y~H~~-----griGVlv~~~~~~------~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er~i~~~~~  216 (296)
T COG0264         149 AG-DGVVGSYLHGN-----GRIGVLVALKGGA------ADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKEREIFLAQL  216 (296)
T ss_pred             cC-cccEEEEEeCC-----CcEEEEEEEeccc------hHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHH
Confidence            75 36899999997     9999999998751      245899999999999999999999999999999999999999


Q ss_pred             HhcCCChHHHHHHHHhhhhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEEeEEEEEecccccC
Q 016590          316 ESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGIRR  386 (386)
Q Consensus       316 ~~~gKP~~i~eKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~v~V~~F~R~~vGEgiek  386 (386)
                      ..+|||++|++|||+|||+|||.|+|||+|+||+||++||+|+|++.      +++|.+|+||+|||||||
T Consensus       217 ~~~gKP~~i~eKiVeGr~~Kf~~E~~Ll~Q~fV~d~~~TV~~~lke~------~~~v~~FvR~evGegieK  281 (296)
T COG0264         217 KAEGKPENIVEKIVEGRMNKFLAEVCLLEQPFVKDPKKTVEQLLKEA------NAKVTEFVRFEVGEGIEK  281 (296)
T ss_pred             HhcCChHHHHHHHHhHHHHHHHHHHhhccCceecCcchhHHHHHHhc------CceeeeeeeeeccCCcee
Confidence            99999999999999999999999999999999999999999999986      589999999999999987

>TIGR00116 tsf translation elongation factor Ts Back     alignment and domain information
>PRK09377 tsf elongation factor Ts; Provisional Back     alignment and domain information
>PRK12332 tsf elongation factor Ts; Reviewed Back     alignment and domain information
>CHL00098 tsf elongation factor Ts Back     alignment and domain information
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases [] Back     alignment and domain information
>KOG1071 consensus Mitochondrial translation elongation factor EF-Tsmt, catalyzes nucleotide exchange on EF-Tumt [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed Back     alignment and domain information
>smart00165 UBA Ubiquitin associated domain Back     alignment and domain information
>TIGR00264 alpha-NAC-related protein Back     alignment and domain information
>cd00194 UBA Ubiquitin Associated domain Back     alignment and domain information
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00116 tsf translation elongation factor Ts Back     alignment and domain information
>CHL00098 tsf elongation factor Ts Back     alignment and domain information
>PRK09377 tsf elongation factor Ts; Provisional Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1) Back     alignment and domain information
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein Back     alignment and domain information
>PRK12332 tsf elongation factor Ts; Reviewed Back     alignment and domain information
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription] Back     alignment and domain information
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ] Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF00542 Ribosomal_L12: Ribosomal protein L7/L12 C-terminal domain; InterPro: IPR013823 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PRK06771 hypothetical protein; Provisional Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
3mmp_A 678 Structure Of The Qb Replicase, An Rna-Dependent Rna 2e-30
3agp_A 1289 Structure Of Viral Polymerase Form I Length = 1289 2e-30
1efu_B282 Elongation Factor Complex Ef-TuEF-Ts From Escherich 3e-30
1aip_C196 Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt 3e-19
1aip_C196 Ef-Tu Ef-Ts Complex From Thermus Thermophilus Lengt 7e-18
1tfe_A145 Dimerization Domain Of Ef-Ts From T. Thermophilus L 5e-18
1xb2_B291 Crystal Structure Of Bos Taurus Mitochondrial Elong 3e-11
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna Polymerase Consisting Of Viral And Host Proteins Length = 678 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (325), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 155/308 (50%), Gaps = 47/308 (15%)
Query: 79  NLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVLASKKSSRTATEGLLALAQ 138
           +L+K+LRE+T A M D K AL + + DIE A++ +RK G + A+KK+   A +G++    
Sbjct: 7   SLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKI 66
Query: 139 NESKAAVIELNCETDFVSRNEIFQYXXXXXXXXXXXXENVSQPVSGLFPVGPEYLEGLKL 198
           + +   ++E+NC+TDFV+++  FQ             + +   V+G        +E LK 
Sbjct: 67  DGNYGIILEVNCQTDFVAKDAGFQ---------AFADKVLDAAVAGKIT----DVEVLKA 113
Query: 199 NLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSGLGRIA 258
             +  ++            + A +GEN+ +RR   ++A    V+ +Y H +      RI 
Sbjct: 114 QFEEERVA-----------LVAKIGENINIRR---VAALEGDVLGSYQHGA------RIG 153
Query: 259 GLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAEST 318
            L++ +  D        + +   +AMH+ A KP F+  E VSA+ +E E ++    A  +
Sbjct: 154 VLVAAKGAD--------EELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQS 205
Query: 319 GKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRM 378
           GK     EKMVEGR++K+  EV L  Q FVM  +  +  +L   + EV        F R 
Sbjct: 206 GKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEV------TGFIRF 259
Query: 379 EVGEGIRR 386
           EVGEGI +
Sbjct: 260 EVGEGIEK 267
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I Length = 1289 Back     alignment and structure
>pdb|1EFU|B Chain B, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli Length = 282 Back     alignment and structure
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196 Back     alignment and structure
>pdb|1AIP|C Chain C, Ef-Tu Ef-Ts Complex From Thermus Thermophilus Length = 196 Back     alignment and structure
>pdb|1TFE|A Chain A, Dimerization Domain Of Ef-Ts From T. Thermophilus Length = 145 Back     alignment and structure
>pdb|1XB2|B Chain B, Crystal Structure Of Bos Taurus Mitochondrial Elongation Factor TuTS COMPLEX Length = 291 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1xb2_B291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 4e-68
1tfe_A145 Elongation factor TS; 1.70A {Thermus thermophilus} 2e-47
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 6e-42
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 9e-22
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 1e-26
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Length = 291 Back     alignment and structure
 Score =  216 bits (551), Expect = 4e-68
 Identities = 69/315 (21%), Positives = 119/315 (37%), Gaps = 54/315 (17%)

Query: 80  LIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRKRGKVL----ASKKSSRTATEGLLA 135
           L+ +LR +T     + K AL  C  D++ A   L K+ +      A++   R   EGL+ 
Sbjct: 7   LLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIG 66

Query: 136 LAQNESKAAVIELNCETDFVSRNEIFQYLALALAKQALVAENVSQPVSGLFPVGPEYLEG 195
           L Q      ++E+NCETDFVSRN  FQ L   +A   L   +       L      +L  
Sbjct: 67  LLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTL--LHCQNLKDQLSTYSKGFLNS 124

Query: 196 LKLNLDHPKIGGETTVQNAITEVAAIMGENVKLRRGFLLSASSPGVVSTYLHTSPQSG-- 253
            +L+        E ++++ +      +GEN+ L+R   +   +   V +Y+H +  S   
Sbjct: 125 SELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPSL 184

Query: 254 ----LGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENERE 309
               LG+   L+  E  +       L  +G  L  H+V   PL +               
Sbjct: 185 HNLVLGKYGALVICETSELK---ANLADLGRRLGQHVVGMAPLSVGS------------- 228

Query: 310 ILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSP 369
                                        E  ++ Q ++++ ++ +   +    +  G  
Sbjct: 229 --------------------LDDEPGGEAETKMLSQPYLLDPSITLGQYV----QPHG-- 262

Query: 370 VKIGSFFRMEVGEGI 384
           V +  F R E GEG 
Sbjct: 263 VSVVDFVRFECGEGE 277
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Length = 145 Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196 Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Length = 196 Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Length = 1289 Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Length = 64 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
1xb2_B291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 100.0
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 100.0
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 100.0
1tfe_A145 Elongation factor TS; 1.70A {Thermus thermophilus} 100.0
2cp9_A64 EF-TS, EF-TSMT, elongation factor TS, mitochondria 99.81
1wj7_A104 Hypothetical protein (RSGI RUH-015); UBA domain, u 97.54
1z96_A40 DNA-damage, UBA-domain protein MUD1; ubiquitin, th 97.5
2g3q_A43 Protein YBL047C; endocytosis, solution structure, 97.14
1xb2_B 291 EF-TS, elongation factor TS, mitochondrial, EF-TSM 96.98
2dah_A54 Ubiquilin-3; UBA domain, structural genomics, NPPS 96.89
2knz_A53 Ubiquilin-4; cytoplasm, endoplasmic reticulum, nuc 96.87
2jy5_A52 Ubiquilin-1; UBA, alternative splicing, cytoplasm, 96.79
2dak_A63 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 96.68
1vej_A74 Riken cDNA 4931431F19; UBA domain, three helix bun 96.64
1tfe_A145 Elongation factor TS; 1.70A {Thermus thermophilus} 96.61
2bwb_A46 Ubiquitin-like protein DSK2; UBA, signaling protei 96.5
2dna_A67 Unnamed protein product; ubiquitin associated doma 96.47
1wr1_B58 Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu 96.42
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 96.42
1wji_A63 Tudor domain containing protein 3; UBA domain, str 96.39
2cpw_A64 CBL-interacting protein STS-1 variant; ubiquitin a 96.31
2dag_A74 Ubiquitin carboxyl-terminal hydrolase 5; isopeptid 95.99
2dai_A83 Ubadc1, ubiquitin associated domain containing 1; 95.9
1vg5_A73 RSGI RUH-014, rhomboid family protein; UBA domain, 95.77
1wiv_A73 UBP14, ubiquitin-specific protease 14; ubiquitin a 95.66
1whc_A64 RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain 95.64
1tr8_A102 Conserved protein (MTH177); chaperones, nascent po 95.63
2crn_A64 Ubash3A protein; compact three-helix bundle, struc 95.27
2dkl_A85 Trinucleotide repeat containing 6C protein; TNRC6C 95.22
2ekk_A47 UBA domain from E3 ubiquitin-protein ligase HUWE1; 95.22
1vek_A84 UBP14, ubiquitin-specific protease 14, putative; U 95.07
1veg_A83 NEDD8 ultimate buster-1; ubiquitin associated doma 95.05
1oai_A59 Nuclear RNA export factor; nuclear transport, nucl 94.98
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 94.9
2cwb_A108 Chimera of immunoglobulin G binding protein G and 94.75
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 94.71
1wgn_A63 UBAP1, ubiquitin associated protein; ubiquitin ass 94.67
2jp7_A57 MRNA export factor MEX67; solution MEX67, UBA, tra 94.55
3e21_A45 HFAF1, FAS-associated factor 1; UBA, alternative s 94.21
1dv0_A47 DNA repair protein HHR23A; helical bundle, DNA bin 93.72
2lva_A129 Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubi 92.12
4ae4_A118 Ubiquitin-associated protein 1; protein transport, 92.93
2lbc_A126 Ubiquitin carboxyl-terminal hydrolase 13; tandem U 92.7
1v92_A46 NSFL1 cofactor P47; 3-helix bundle, recombination; 91.46
1vdl_A80 Ubiquitin carboxyl-terminal hydrolase 25; UBA doma 91.26
2dam_A67 ETEA protein; KIAA0887, UBA-like domain, structura 91.01
1aip_C196 EF-TS, elongation factor TS; nucleotide exchange, 90.84
2cp8_A54 NEXT to BRCA1 gene 1 protein; UBA domain, structur 90.34
2dal_A62 Protein KIAA0794; FAS associted factor 1, UBA-like 89.97
2ooa_A52 E3 ubiquitin-protein ligase CBL-B; alpha-helical d 88.53
2d9s_A53 CBL E3 ubiquitin protein ligase; UBA domain, dimer 88.12
1otr_A49 Protein CUE2; protein-protein complex, cell cycle; 87.13
2oo9_A46 E3 ubiquitin-protein ligase CBL; alpha-helical dom 86.34
2dzl_A66 Protein FAM100B; UBA-like domain, structural genom 85.59
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 85.15
2juj_A56 E3 ubiquitin-protein ligase CBL; alpha helix, UBA 83.49
3avx_A 1289 Elongation factor TS, elongation factor TU, linke 82.0
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Back     alignment and structure
Probab=100.00  E-value=9.5e-82  Score=612.41  Aligned_cols=261  Identities=26%  Similarity=0.370  Sum_probs=225.6

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHH----cccccccccccccccCCcEEEEecCCeEEEEEEeccc
Q 016590           77 QVNLIKQLREQTSAPMKDVKLALVDCDWDIEAALKELRK----RGKVLASKKSSRTATEGLLALAQNESKAAVIELNCET  152 (386)
Q Consensus        77 ~~~lIK~LR~~Tgagm~dCKkAL~e~ngDiekAi~~LRk----kG~akA~Kka~R~a~EGlV~~~~~~~~aalvElNCET  152 (386)
                      .+++||+||++||||||||||||+|+|||||+|++|||+    +||++|+||+||.|+||+|+++++++.|+||||||||
T Consensus         4 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNcET   83 (291)
T 1xb2_B            4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNCET   83 (291)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEESC
T ss_pred             CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEeccc
Confidence            468999999999999999999999999999999999999    9999999999999999999999999999999999999


Q ss_pred             cceecchHHHHHHHHHHHHHHhhcCCCCCCCCCC--CC-ChhhhhccccCCCCCCCCCCCc--HHHHHHHHHHHhcceee
Q 016590          153 DFVSRNEIFQYLALALAKQALVAENVSQPVSGLF--PV-GPEYLEGLKLNLDHPKIGGETT--VQNAITEVAAIMGENVK  227 (386)
Q Consensus       153 DFVArN~~F~~la~~ia~~~l~~~~~~~~~~~~~--~l-~~e~l~~~~~~~~~~~~~~~~T--v~d~i~~~ia~iGENI~  227 (386)
                      ||||||+.|++|+++|+..++...+.........  .+ +.+++..+++       .++.|  |+|.+.++|++|||||.
T Consensus        84 DFVArN~~F~~l~~~ia~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~-------~~~~t~tv~d~i~~~ia~iGEni~  156 (291)
T 1xb2_B           84 DFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPA-------GPEREGSLKDQLALAIGKLGENMI  156 (291)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBC-------CSSSCSBHHHHHHHHHHHHCSCEE
T ss_pred             ceeeCCHHHHHHHHHHHHHHHhcCCcccccccccccccCCHHHHhhccc-------ccCcchhHHHHHHHHHHHhhhhHH
Confidence            9999999999999999999998765421111111  12 6777776653       23556  99999999999999999


Q ss_pred             eeeeEEeeeCCCCeEEEEecCCCC------CCCCcEEEEEEEeecCCCCCCchhhhHHHHHHHHhhhcCCcccccCCCCH
Q 016590          228 LRRGFLLSASSPGVVSTYLHTSPQ------SGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSA  301 (386)
Q Consensus       228 LrR~~~~~~~~~~~v~sY~H~~~~------~~~Gkig~LV~l~~~~~~~~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~  301 (386)
                      |||+..+..++++++++|+|+++.      +++||||+||.+++.++.   +.+.+++++||||||||+|.||++++|  
T Consensus       157 lrR~~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~~---~~l~~~ak~iAmHIaA~~P~~l~~~~v--  231 (291)
T 1xb2_B          157 LKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELK---ANLADLGRRLGQHVVGMAPLSVGSLDD--  231 (291)
T ss_dssp             EEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCG---GGCHHHHHHHHHHHHHHCCSBCCCTTS--
T ss_pred             HHHHHHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCcc---chHHHHHHHHHHHHHhcCCcccCHHHh--
Confidence            999999987667899999998743      577999999999975321   224589999999999999999999988  


Q ss_pred             HHHHHHHHHHHHHHHhcCCChHHHHHHHHhhhhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEEeEEEEEec
Q 016590          302 DALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVG  381 (386)
Q Consensus       302 ~~le~Er~i~~~q~~~~gKP~~i~eKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~v~V~~F~R~~vG  381 (386)
                                     .+                +||+|+|||+|+||+|+++||+|||++.      +++|.+|+||+||
T Consensus       232 ---------------~~----------------gf~~E~~Ll~Q~fv~D~~~tV~~~l~~~------~i~V~~F~RfevG  274 (291)
T 1xb2_B          232 ---------------EP----------------GGEAETKMLSQPYLLDPSITLGQYVQPH------GVSVVDFVRFECG  274 (291)
T ss_dssp             ---------------CC----------------CGGGCCBGGGSBCTTCTTSBHHHHHGGG------TCEEEEEEEEETT
T ss_pred             ---------------hc----------------cchhheeeccCcccCCCCcCHHHHHHhC------CCEEEEEEEEEec
Confidence                           11                2999999999999999999999999985      5999999999999


Q ss_pred             ccccC
Q 016590          382 EGIRR  386 (386)
Q Consensus       382 Egiek  386 (386)
                      |||||
T Consensus       275 Egiek  279 (291)
T 1xb2_B          275 EGEDA  279 (291)
T ss_dssp             CC---
T ss_pred             Ccccc
Confidence            99986
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Back     alignment and structure
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Back     alignment and structure
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2 Back     alignment and structure
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1 Back     alignment and structure
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1 Back     alignment and structure
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus} Back     alignment and structure
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B Back     alignment and structure
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1 Back     alignment and structure
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A Back     alignment and structure
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis} Back     alignment and structure
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1 Back     alignment and structure
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3 Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A Back     alignment and structure
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens} Back     alignment and structure
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A Back     alignment and structure
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B* Back     alignment and structure
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens} Back     alignment and structure
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3 Back     alignment and structure
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1 Back     alignment and structure
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1 Back     alignment and structure
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A Back     alignment and structure
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4 Back     alignment and structure
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens} Back     alignment and structure
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens} Back     alignment and structure
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 386
d1tfea_142 d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimeri 5e-29
d1efub2143 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), 7e-24
d1xb2b2111 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), 8e-22
d1aipc152 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-t 3e-16
d1efub485 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), 1e-15
d1xb2b156 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N 2e-15
d1efub354 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-t 7e-15
d1xb2b3109 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), 1e-12
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Length = 142 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Thermus thermophilus [TaxId: 274]

 Score =  107 bits (269), Expect = 5e-29
 Identities = 48/146 (32%), Positives = 80/146 (54%), Gaps = 6/146 (4%)

Query: 237 SSPGVVSTYLHTSPQSGLGRIAGLLSLEVE-DGSSSFDPLKRVGSELAMHIVAQKPLFLT 295
           +  G++  Y+H +      R+  L+ L  E D  +  +  + +  +LAMHI    P +++
Sbjct: 1   AREGIIGHYIHHN-----QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVS 55

Query: 296 KELVSADALENEREILKSQAESTGKSPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNI 355
            E + A+ LE ER+I    A + GK     EK+ EGRL+KY EEVVL+EQ FV +D + +
Sbjct: 56  AEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKV 115

Query: 356 KTILDNLSKEVGSPVKIGSFFRMEVG 381
           K ++     ++G  + +  F R E+G
Sbjct: 116 KELIQQAIAKIGENIVVRRFCRFELG 141
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 143 Back     information, alignment and structure
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 111 Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 52 Back     information, alignment and structure
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Length = 85 Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 56 Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 54 Back     information, alignment and structure
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 109 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d1efub2143 Elongation factor Ts (EF-Ts), dimerisation domain 100.0
d1tfea_142 Elongation factor Ts (EF-Ts), dimerisation domain 100.0
d1xb2b2111 Elongation factor Ts (EF-Ts), dimerisation domain 99.95
d1xb2b3109 Elongation factor Ts (EF-Ts), dimerisation domain 99.95
d1efub485 Elongation factor Ts (EF-Ts), dimerisation domain 99.92
d1aipc152 Elongation factor Ts (EF-Ts), N-terminal domain {T 99.89
d1xb2b156 Elongation factor Ts (EF-Ts), N-terminal domain {C 99.88
d1efub354 Elongation factor Ts (EF-Ts), N-terminal domain {E 99.87
d1tfea_142 Elongation factor Ts (EF-Ts), dimerisation domain 99.34
d1xb2b2111 Elongation factor Ts (EF-Ts), dimerisation domain 98.37
d1xb2b3109 Elongation factor Ts (EF-Ts), dimerisation domain 97.28
d1vg5a_73 Rhomboid family protein At3g58460 {Thale cress (Ar 96.48
d1efub485 Elongation factor Ts (EF-Ts), dimerisation domain 96.35
d1wjia_63 Tudor domain containing protein 3, TDRD3 {Human (H 96.1
d2cpwa151 Cbl-interacting protein p70, STS1 {Human (Homo sap 95.93
d1wgna_63 Ubiquitin-associated protein 1, UBAP1 {Human (Homo 95.81
d1oqya141 DNA repair protein Hhr23a {Human (Homo sapiens) [T 95.68
d2daha141 Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} 95.44
d1wiva_73 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 94.95
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 94.7
d1efub2143 Elongation factor Ts (EF-Ts), dimerisation domain 94.64
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 94.63
d1wj7a191 Ubiquitin-associated protein 2-like Ubap2l {Mouse 94.31
d1veja161 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] 94.11
d1oaia_59 FG-binding, C-terminal domain of TAP {Human (Homo 94.07
d1whca_64 UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [Ta 93.93
d2crna151 Suppressor of T-cell receptor signaling 2 (STS-2) 93.92
d2g3qa143 Endocytic protein Ede1, YBL047C {Saccharomyces cer 93.4
d1v92a_46 NSFL1 (p97 ATPase) cofactor p47, UBA-like domain { 92.99
d1vdla_80 Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (M 92.54
d1veka_84 Ubiquitin isopeptidase T {Thale cress (Arabidopsis 91.78
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: EF-Ts domain-like
superfamily: Elongation factor Ts (EF-Ts), dimerisation domain
family: Elongation factor Ts (EF-Ts), dimerisation domain
domain: Elongation factor Ts (EF-Ts), dimerisation domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.3e-45  Score=318.96  Aligned_cols=126  Identities=37%  Similarity=0.584  Sum_probs=119.9

Q ss_pred             eEEEEecCCCCCCCCcEEEEEEEeecCCCCCCchhhhHHHHHHHHhhhcCCcccccCCCCHHHHHHHHHHHHHHHHhcCC
Q 016590          241 VVSTYLHTSPQSGLGRIAGLLSLEVEDGSSSFDPLKRVGSELAMHIVAQKPLFLTKELVSADALENEREILKSQAESTGK  320 (386)
Q Consensus       241 ~v~sY~H~~~~~~~Gkig~LV~l~~~~~~~~~~~~~~~ak~iAmHIaA~~P~~ls~~~Vp~~~le~Er~i~~~q~~~~gK  320 (386)
                      ++++|+|+      ||||+||++++.+        +++||+||||||||+|.||++++||++++++||+|+++|++.+||
T Consensus         2 vi~sYiH~------gkigvlV~~~~~~--------~e~ak~iAMHIAA~~P~~l~~~~vp~~~i~kE~~i~~~q~~~~gK   67 (143)
T d1efub2           2 VLGSYQHG------ARIGVLVAAKGAD--------EELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGK   67 (143)
T ss_dssp             EEEEEEET------TTEEEEEEEESCC--------HHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             eEEEEecC------CEEEEEEEecCcc--------HHHHHHHHHHHhccCCcccccccCCHHHHHHHHHHhHhhhhcccc
Confidence            68999994      8999999998643        479999999999999999999999999999999999999999999


Q ss_pred             ChHHHHHHHHhhhhhhhhcccccccccccCCCCcHHHHHHHhhhhcCCCeEEEeEEEEEecccccC
Q 016590          321 SPMAIEKMVEGRLRKYYEEVVLMEQKFVMNDTLNIKTILDNLSKEVGSPVKIGSFFRMEVGEGIRR  386 (386)
Q Consensus       321 P~~i~eKIveGrl~K~~~E~~LleQ~fi~D~~~tV~~~L~~~~k~~g~~v~V~~F~R~~vGEgiek  386 (386)
                      |++|+|||++|||+|||+|+||++|+||+|+++||+++|++.      +++|.+|+||+|||||||
T Consensus        68 Pe~i~eKIveGkl~Kf~~E~~LleQ~fv~D~~~tV~~~l~~~------~~~v~~FvRfevGEGiEk  127 (143)
T d1efub2          68 PKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIEK  127 (143)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHBTTTSEETTEEEEEHHHHHHTT------TCEEEEEEEEETTTTSCC
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhcccccccCCceeHHHHHHhC------CCEEEEEEEEEecCceeE
Confidence            999999999999999999999999999999999999999885      478999999999999997
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts), dimerisation domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wjia_ a.5.2.1 (A:) Tudor domain containing protein 3, TDRD3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpwa1 a.5.2.1 (A:8-58) Cbl-interacting protein p70, STS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgna_ a.5.2.1 (A:) Ubiquitin-associated protein 1, UBAP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1oqya1 a.5.2.1 (A:160-200) DNA repair protein Hhr23a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wiva_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts), dimerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wj7a1 a.5.2.1 (A:8-98) Ubiquitin-associated protein 2-like Ubap2l {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1oaia_ a.5.2.3 (A:) FG-binding, C-terminal domain of TAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1whca_ a.5.2.1 (A:) UBA/UBX 33.3 kDa protein {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2crna1 a.5.2.1 (A:8-58) Suppressor of T-cell receptor signaling 2 (STS-2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1v92a_ a.5.2.3 (A:) NSFL1 (p97 ATPase) cofactor p47, UBA-like domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1vdla_ a.5.2.1 (A:) Ubiquitin carboxyl-terminal hydrolase 25 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1veka_ a.5.2.1 (A:) Ubiquitin isopeptidase T {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure