Citrus Sinensis ID: 016606

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------

MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIRPEYFGYLDLLQSLRRGDFS

ccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEEcccccccccccccccccEEcccccccccccccHHHHHHHHHHHcccccccccEEEEEEccEEEEEEcHHHHHHHHccccEEEEEcccccccccEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEccccccccccEEEEEEEEEEEEcccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccEEEEEEEEEEEcccEEEEEEEEEEEEcccccccccccccccccEEEEcHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccHHHHHHHHcccccc

ccccccccEEEEEEccccccccEEcHHccccccccccccEccccccccccccHHHHHHHcccccccccccccHHHHHEEcccccccccccHHHHHHHHHHHHHcccHcccccEEEEEccEEEEEccHHHHHHHHHcccEEEEEcccccccccEEEEccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccEEEEEEEEEEEEccccEEEEEEccccccccccccccccEcccccccccHHHHHHHHHHHHccccHHHHHHcccccEEEEEEEccccccccEEEEEEccccccccccccccccccEEEccHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHccccc

macnfhhltqtirlsfpplhnfkvsdaftnkslittfpvrfsvhssakltTSIRSLRVDTasisyrssctftwddvfrvsqpeyspddssdlrGYFEKIKicnrgsemqseffpfiiedqvagythnrfashlrkyddvfiysgnnggrfgshvklnsklktadERTRVVGEVIKCLaeeelipdiqnelypvastfgspiffsldraaapyfgikayavplngyvekdgqkflwigkrsqvkstypgmldilaggglphgiacGENIIKECeeeagiprsisnrarpvgavsytdingfsykrdvifcydlklpedfvpmnqdgevesfqlmpvAHVANVIRrteffkpncsLAIIDFLFrhgyirpeyFGYLDLLQSLRRGDFS

macnfhhltqtirlsfpplhNFKVSDAFTNKSLITTFpvrfsvhssaklttsirslrvdtasisyrssctftwddvfrvsqpeyspddssdlrGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNnggrfgshvklnsklktadertRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGiprsisnrarpvGAVSytdingfsykRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIRPEYFGYLDLLQSLRRGDFS

**CNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVS***********LRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIRPEYFGYLDLLQS*******

********TQTIRLSFPPLHNF**********LITTFPVRFS****************************************************YFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIRPEYFGYLDLLQSLRRG***

**C*FHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIRPEYFGYLDLLQSLRR****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		386	2.2.26 [Sep-21-2011]
Q8VXZ0		374	Nudix hydrolase 20, chlor	yes	no	0.963	0.994	0.564	1e-120
P0C026		365	Nudix hydrolase 24, chlor	no	no	0.839	0.887	0.591	1e-114
P47173		342	Uncharacterized protein Y	yes	no	0.585	0.660	0.370	2e-31
P41888		569	Thiamine pyrophosphokinas	yes	no	0.588	0.398	0.302	8e-24

>sp\|Q8VXZ0\|NUD20_ARATH Nudix hydrolase 20, chloroplastic OS=Arabidopsis thaliana GN=NUDT20 PE=2 SV=1	Back alignment and function desciption

 Score =  432 bits (1110), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/388 (56%), Positives = 272/388 (70%), Gaps = 16/388 (4%)

Query: 1   MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDT 60
           MA  F  L  T+  S    H      A T + L    P+     SS+   + +R  R  +
Sbjct: 1   MASGFCSLALTVTTSLFSSH------AITRRVL----PI-LRWRSSSMSLSPLRHSRALS 49

Query: 61  ASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQ 120
           A+ +   S +FTWDDV    + EY   +SSDL G+FEKI  CNRGSE   EF PF+IE+Q
Sbjct: 50  AATTVPISSSFTWDDVIETGRAEY---NSSDLTGFFEKINRCNRGSEKLGEFIPFVIEEQ 106

Query: 121 VAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLA 178
           + GY H RF  +LR++ D+F +S N     R   +V LN  L+  ++RTR V +VIK L 
Sbjct: 107 IVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQKPEDRTRAVADVIKILG 166

Query: 179 EEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGK 238
           ++ +IP I+NELYPV  +F +P+FFSL+RAAAPYFGIK Y V +NGYVE+DGQK LWIGK
Sbjct: 167 DKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKLLWIGK 226

Query: 239 RSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDIN 298
           RS  KSTYPGMLD L  GGLPHGI+CG N++KECEEEAGI R+I++RA  VGAVSY DI+
Sbjct: 227 RSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGISRAIADRAIAVGAVSYLDID 286

Query: 299 GFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIID 358
            + +KRDV+FCYDL+LPEDFVP NQDGEVESF+L+PVA VA+VI++T FFK NCSL IID
Sbjct: 287 QYCFKRDVLFCYDLELPEDFVPKNQDGEVESFKLIPVAQVASVIKKTSFFKANCSLVIID 346

Query: 359 FLFRHGYIRPEYFGYLDLLQSLRRGDFS 386
           FLFRHG+IRPE  GYLDL Q LR  D S
Sbjct: 347 FLFRHGFIRPESSGYLDLYQRLRNRDCS 374

Probably mediates the hydrolysis of some nucleoside diphosphate derivatives.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: -

>sp\|P0C026\|NUD24_ARATH Nudix hydrolase 24, chloroplastic OS=Arabidopsis thaliana GN=NUDT24 PE=2 SV=1	Back alignment and function description

>sp\|P47173\|YJ9J_YEAST Uncharacterized protein YJR142W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YJR142W PE=1 SV=1	Back alignment and function description

>sp\|P41888\|TNR3_SCHPO Thiamine pyrophosphokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tnr3 PE=4 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		386
225445320		364	PREDICTED: nudix hydrolase 20, chloropla	0.935	0.991	0.610	1e-130
359484616		364	PREDICTED: nudix hydrolase 20, chloropla	0.940	0.997	0.607	1e-130
297738863		392	unnamed protein product [Vitis vinifera]	0.940	0.926	0.607	1e-130
224119736		367	predicted protein [Populus trichocarpa]	0.834	0.877	0.681	1e-128
449461965		370	PREDICTED: nudix hydrolase 20, chloropla	0.911	0.951	0.606	1e-125
359484618		356	PREDICTED: nudix hydrolase 20, chloropla	0.919	0.997	0.589	1e-123
147791238		448	hypothetical protein VITISV_032861 [Viti	0.932	0.803	0.554	1e-123
357500493		391	Nudix hydrolase [Medicago truncatula] gi	0.841	0.831	0.650	1e-122
22326896		374	nudix hydrolase 20 [Arabidopsis thaliana	0.963	0.994	0.564	1e-118
357158007		363	PREDICTED: nudix hydrolase 20, chloropla	0.810	0.862	0.643	1e-118

>gi\|225445320\|ref\|XP_002281437.1\| PREDICTED: nudix hydrolase 20, chloroplastic [Vitis vinifera] gi\|297738865\|emb\|CBI28110.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 235/385 (61%), Positives = 290/385 (75%), Gaps = 24/385 (6%)

Query: 1   MACNFHHLTQTIRLSFPPLHNFKVSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDT 60
           MACN H L    RL     H+ + S A  +  L+   P R ++ S    +T IR      
Sbjct: 1   MACNHHQL----RLC----HSVRSSIASLSSPLL---PTRLTLSSRTLASTPIR-----V 44

Query: 61  ASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQ 120
            S S  ++C FTWDDV R+S  +YS   SSDL+G+FEKI++CNRG E QS+F PF+IEDQ
Sbjct: 45  GSPSVSATC-FTWDDVVRISDSQYSSRHSSDLQGFFEKIRVCNRGLEKQSDFLPFVIEDQ 103

Query: 121 VAGYTHNRF-ASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAE 179
             GY H  F   HL+++ +VFI++ +N     SH+ L+  L+T +ERTR VG+V+KCL E
Sbjct: 104 TVGYIHKGFFDDHLKRFSNVFIFTQDN-----SHIMLHPVLRTPNERTRAVGDVVKCLGE 158

Query: 180 EELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKR 239
           E LIP I+ ELYPVAS+FG+P+FF L+RAAAPYFGIK+Y V +NGY E++GQK+LWIGKR
Sbjct: 159 E-LIPGIRKELYPVASSFGAPVFFLLERAAAPYFGIKSYGVHMNGYTERNGQKYLWIGKR 217

Query: 240 SQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDING 299
           SQVK TYPGMLD L  GGLPHGIAC EN++KECEEEAGIPRS+S  A PVGAVSY DI+G
Sbjct: 218 SQVKPTYPGMLDHLVAGGLPHGIACKENVMKECEEEAGIPRSMSKEAVPVGAVSYGDIDG 277

Query: 300 FSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDF 359
           + YKRDV+FCYDLKLP+DF+P NQDGEVESF+L+PV+ VA+V+RRT FFK NCSL IIDF
Sbjct: 278 YRYKRDVLFCYDLKLPDDFIPKNQDGEVESFRLIPVSQVADVVRRTHFFKANCSLVIIDF 337

Query: 360 LFRHGYIRPEYFGYLDLLQSLRRGD 384
           LFRHGYI P+  GYL+LLQSLRRGD
Sbjct: 338 LFRHGYIGPDSLGYLELLQSLRRGD 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359484616\|ref\|XP_002281417.2\| PREDICTED: nudix hydrolase 20, chloroplastic-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|297738863\|emb\|CBI28108.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224119736\|ref\|XP_002331148.1\| predicted protein [Populus trichocarpa] gi\|222873231\|gb\|EEF10362.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449461965\|ref\|XP_004148712.1\| PREDICTED: nudix hydrolase 20, chloroplastic-like [Cucumis sativus] gi\|449519376\|ref\|XP_004166711.1\| PREDICTED: nudix hydrolase 20, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|359484618\|ref\|XP_003633132.1\| PREDICTED: nudix hydrolase 20, chloroplastic-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147791238\|emb\|CAN70130.1\| hypothetical protein VITISV_032861 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357500493\|ref\|XP_003620535.1\| Nudix hydrolase [Medicago truncatula] gi\|355495550\|gb\|AES76753.1\| Nudix hydrolase [Medicago truncatula]	Back alignment and taxonomy information

>gi\|22326896\|ref\|NP_197447.2\| nudix hydrolase 20 [Arabidopsis thaliana] gi\|68565915\|sp\|Q8VXZ0.1\|NUD20_ARATH RecName: Full=Nudix hydrolase 20, chloroplastic; Short=AtNUDT20; Flags: Precursor gi\|18377777\|gb\|AAL67038.1\| unknown protein [Arabidopsis thaliana] gi\|21436069\|gb\|AAM51235.1\| unknown protein [Arabidopsis thaliana] gi\|332005327\|gb\|AED92710.1\| nudix hydrolase 20 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357158007\|ref\|XP_003577986.1\| PREDICTED: nudix hydrolase 20, chloroplastic-like [Brachypodium distachyon]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		386
TAIR\|locus:2150240		374	NUDT20 "nudix hydrolase homolo	0.878	0.906	0.604	1.4e-110
TAIR\|locus:2150260		365	NUDT24 "nudix hydrolase homolo	0.906	0.958	0.568	9.2e-107
ZFIN\|ZDB-GENE-060503-173		297	si:dkey-6n6.2 "si:dkey-6n6.2"	0.696	0.905	0.353	2.1e-38
FB\|FBgn0039958		349	CG12567 [Drosophila melanogast	0.645	0.713	0.338	5.8e-34
SGD\|S000003903		342	YJR142W "Putative protein of u	0.585	0.660	0.374	8.5e-33
ASPGD\|ASPL0000062708		319	AN0193 [Emericella nidulans (t	0.554	0.670	0.371	1.6e-31
CGD\|CAL0005587		305	orf19.4112 [Candida albicans (	0.569	0.721	0.364	2.3e-30
UNIPROTKB\|B3NKG4		2299	GG21418 "GG21418" [Drosophila	0.544	0.091	0.354	9.4e-29
UNIPROTKB\|G4MSN7		341	MGG_07079 "Nudix hydrolase 20"	0.546	0.618	0.347	2.2e-27
POMBASE\|SPAC6F12.05c		569	tnr3 "thiamine diphosphokinase	0.588	0.398	0.310	4.4e-25

TAIR\|locus:2150240 NUDT20 "nudix hydrolase homolog 20" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1092 (389.5 bits), Expect = 1.4e-110, P = 1.4e-110
 Identities = 208/344 (60%), Positives = 258/344 (75%)

Query:    45 SSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNR 104
             SS+   + +R  R  +A+ +   S +FTWDDV    + EY+   SSDL G+FEKI  CNR
Sbjct:    34 SSSMSLSPLRHSRALSAATTVPISSSFTWDDVIETGRAEYN---SSDLTGFFEKINRCNR 90

Query:   105 GSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKT 162
             GSE   EF PF+IE+Q+ GY H RF  +LR++ D+F +S N     R   +V LN  L+ 
Sbjct:    91 GSEKLGEFIPFVIEEQIVGYIHKRFTEYLREFHDIFTFSQNGSCPDRVDGYVTLNLMLQK 150

Query:   163 ADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPL 222
              ++RTR V +VIK L ++ +IP I+NELYPV  +F +P+FFSL+RAAAPYFGIK Y V +
Sbjct:   151 PEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPVFFSLERAAAPYFGIKGYGVHM 210

Query:   223 NGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEEEAGIPRSI 282
             NGYVE+DGQK LWIGKRS  KSTYPGMLD L  GGLPHGI+CG N++KECEEEAGI R+I
Sbjct:   211 NGYVERDGQKLLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGISRAI 270

Query:   283 SNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVI 342
             ++RA  VGAVSY DI+ + +KRDV+FCYDL+LPEDFVP NQDGEVESF+L+PVA VA+VI
Sbjct:   271 ADRAIAVGAVSYLDIDQYCFKRDVLFCYDLELPEDFVPKNQDGEVESFKLIPVAQVASVI 330

Query:   343 RRTEFFKPNCSLAIIDFLFRHGYIRPEYFGYLDLLQSLRRGDFS 386
             ++T FFK NCSL IIDFLFRHG+IRPE  GYLDL Q LR  D S
Sbjct:   331 KKTSFFKANCSLVIIDFLFRHGFIRPESSGYLDLYQRLRNRDCS 374

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016787 "hydrolase activity" evidence=IEA;ISS

TAIR\|locus:2150260 NUDT24 "nudix hydrolase homolog 24" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-060503-173 si:dkey-6n6.2 "si:dkey-6n6.2" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

FB\|FBgn0039958 CG12567 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

SGD\|S000003903 YJR142W "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000062708 AN0193 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

CGD\|CAL0005587 orf19.4112 [Candida albicans (taxid:5476)]	Back alignment and assigned GO terms

UNIPROTKB\|B3NKG4 GG21418 "GG21418" [Drosophila erecta (taxid:7220)]	Back alignment and assigned GO terms

UNIPROTKB\|G4MSN7 MGG_07079 "Nudix hydrolase 20" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

POMBASE\|SPAC6F12.05c tnr3 "thiamine diphosphokinase Tnr3/ Nudix hydrolase fusion protein" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VXZ0	NUD20_ARATH	3, ., 6, ., 1, ., -	0.5644	0.9637	0.9946	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		386
PLN02839		372	PLN02839, PLN02839, nudix hydrolase	1e-163
cd03676		180	cd03676, Nudix_hydrolase_3, Members of the Nudix h	8e-76
cd04692		144	cd04692, Nudix_Hydrolase_33, Members of the Nudix	1e-09
cd04697		126	cd04697, Nudix_Hydrolase_38, Members of the Nudix	3e-07
pfam00293		133	pfam00293, NUDIX, NUDIX domain	6e-04
PRK15393		180	PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisio	0.001

>gnl\|CDD\|178432 PLN02839, PLN02839, nudix hydrolase	Back alignment and domain information

 Score =  463 bits (1192), Expect = e-163
 Identities = 216/365 (59%), Positives = 267/365 (73%), Gaps = 6/365 (1%)

Query: 24  VSDAFTNKSLITTFPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPE 83
           V+  F++ +LI T   R S  S + L  S       T  IS     +FTWDDV    + E
Sbjct: 12  VTSLFSSHALIPTLRWRSSSMSRSPLRHSRAVSAATTVPIS----SSFTWDDVIETGRAE 67

Query: 84  YSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYS 143
           Y P +SSDL G+ EK+  CNRGSE   EF PF+IE+Q+ GY H  F  +LR++ D+F +S
Sbjct: 68  YVPQNSSDLTGFLEKVDRCNRGSEKLGEFIPFVIEEQIVGYIHKGFTEYLREFHDIFTFS 127

Query: 144 --GNNGGRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPI 201
             G+   R   HV LN  L+  ++RTR V +VIK L ++ +IP I+NELYPV  +F +P+
Sbjct: 128 QNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPVKPSFNAPV 187

Query: 202 FFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHG 261
           FFSL+RAAAPYFGIK Y V +NGYVE+DGQKFLWIGKRS  KSTYPGMLD L  GGLPHG
Sbjct: 188 FFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHG 247

Query: 262 IACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPM 321
           I+CGEN++KECEEEAGI ++I++RA  VGAVSY DI+ + +KRDV+FCYDL+LP+DFVP 
Sbjct: 248 ISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYDLELPQDFVPK 307

Query: 322 NQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIRPEYFGYLDLLQSLR 381
           NQDGEVESF+L+PVA VANVIR+T FFK NCSL IIDFLFRHG+IRPE  GYLDL + LR
Sbjct: 308 NQDGEVESFKLIPVAQVANVIRKTSFFKANCSLVIIDFLFRHGFIRPESSGYLDLYRRLR 367

Query: 382 RGDFS 386
            GD S
Sbjct: 368 NGDCS 372

Length = 372

>gnl\|CDD\|239648 cd03676, Nudix_hydrolase_3, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240048 cd04692, Nudix_Hydrolase_33, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|240053 cd04697, Nudix_Hydrolase_38, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>gnl\|CDD\|215841 pfam00293, NUDIX, NUDIX domain	Back alignment and domain information

>gnl\|CDD\|185291 PRK15393, PRK15393, NUDIX hydrolase YfcD; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		386
PLN02839		372	nudix hydrolase	100.0
KOG4313		306	consensus Thiamine pyrophosphokinase [Nucleotide t	100.0
cd03676		180	Nudix_hydrolase_3 Members of the Nudix hydrolase s	100.0
cd02885		165	IPP_Isomerase Isopentenyl diphosphate (IPP) isomer	99.92
PRK03759		184	isopentenyl-diphosphate delta-isomerase; Provision	99.92
TIGR02150		158	IPP_isom_1 isopentenyl-diphosphate delta-isomerase	99.91
PRK15393		180	NUDIX hydrolase YfcD; Provisional	99.91
PLN02552		247	isopentenyl-diphosphate delta-isomerase	99.91
PLN02791		770	Nudix hydrolase homolog	99.9
cd04692		144	Nudix_Hydrolase_33 Members of the Nudix hydrolase	99.88
cd04697		126	Nudix_Hydrolase_38 Members of the Nudix hydrolase	99.83
cd04693		127	Nudix_Hydrolase_34 Members of the Nudix hydrolase	99.81
COG1443		185	Idi Isopentenyldiphosphate isomerase [Lipid metabo	99.8
cd03424		137	ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase)	99.7
cd04682		122	Nudix_Hydrolase_23 Members of the Nudix hydrolase	99.67
cd03426		157	CoAse Coenzyme A pyrophosphatase (CoAse), a member	99.66
cd04664		129	Nudix_Hydrolase_7 Members of the Nudix hydrolase s	99.65
PRK15472		141	nucleoside triphosphatase NudI; Provisional	99.64
PF00293		134	NUDIX: NUDIX domain; InterPro: IPR000086 The gener	99.61
cd04684		128	Nudix_Hydrolase_25 Contains a crystal structure of	99.6
cd04683		120	Nudix_Hydrolase_24 Members of the Nudix hydrolase	99.6
cd04691		117	Nudix_Hydrolase_32 Members of the Nudix hydrolase	99.59
PRK09438		148	nudB dihydroneopterin triphosphate pyrophosphatase	99.59
cd04679		125	Nudix_Hydrolase_20 Members of the Nudix hydrolase	99.58
cd04694		143	Nudix_Hydrolase_35 Members of the Nudix hydrolase	99.57
cd03673		131	Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hy	99.57
KOG0142		225	consensus Isopentenyl pyrophosphate:dimethylallyl	99.56
cd04700		142	DR1025_like DR1025 from Deinococcus radiodurans, a	99.56
cd03675		134	Nudix_Hydrolase_2 Contains a crystal structure of	99.55
cd04680		120	Nudix_Hydrolase_21 Members of the Nudix hydrolase	99.55
cd04673		122	Nudix_Hydrolase_15 Members of the Nudix hydrolase	99.54
PRK15434		159	GDP-mannose mannosyl hydrolase NudD; Provisional	99.54
cd04681		130	Nudix_Hydrolase_22 Members of the Nudix hydrolase	99.53
cd03430		144	GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mann	99.52
cd04688		126	Nudix_Hydrolase_29 Members of the Nudix hydrolase	99.52
cd04677		132	Nudix_Hydrolase_18 Members of the Nudix hydrolase	99.51
cd04699		129	Nudix_Hydrolase_39 Members of the Nudix hydrolase	99.5
cd03671		147	Ap4A_hydrolase_plant_like Diadenosine tetraphospha	99.5
cd03428		130	Ap4A_hydrolase_human_like Diadenosine tetraphospha	99.5
cd03427		137	MTH1 MutT homolog-1 (MTH1) is a member of the Nudi	99.5
cd04695		131	Nudix_Hydrolase_36 Members of the Nudix hydrolase	99.49
cd04678		129	Nudix_Hydrolase_19 Members of the Nudix hydrolase	99.49
cd04696		125	Nudix_Hydrolase_37 Members of the Nudix hydrolase	99.48
cd04689		125	Nudix_Hydrolase_30 Members of the Nudix hydrolase	99.48
cd03425		124	MutT_pyrophosphohydrolase The MutT pyrophosphohydr	99.46
cd04670		127	Nudix_Hydrolase_12 Members of the Nudix hydrolase	99.44
cd03429		131	NADH_pyrophosphatase NADH pyrophosphatase, a membe	99.43
cd03674		138	Nudix_Hydrolase_1 Members of the Nudix hydrolase s	99.43
cd04687		128	Nudix_Hydrolase_28 Members of the Nudix hydrolase	99.42
cd04666		122	Nudix_Hydrolase_9 Members of the Nudix hydrolase s	99.42
PRK10707		190	putative NUDIX hydrolase; Provisional	99.42
PRK00714		156	RNA pyrophosphohydrolase; Reviewed	99.42
PRK10776		129	nucleoside triphosphate pyrophosphohydrolase; Prov	99.41
cd02883		123	Nudix_Hydrolase Nudix hydrolase is a superfamily o	99.41
cd04671		123	Nudix_Hydrolase_13 Members of the Nudix hydrolase	99.41
PLN02325		144	nudix hydrolase	99.4
cd04685		133	Nudix_Hydrolase_26 Members of the Nudix hydrolase	99.39
PRK10546		135	pyrimidine (deoxy)nucleoside triphosphate pyrophos	99.39
cd04676		129	Nudix_Hydrolase_17 Members of the Nudix hydrolase	99.37
cd04690		118	Nudix_Hydrolase_31 Members of the Nudix hydrolase	99.36
PRK11762		185	nudE adenosine nucleotide hydrolase NudE; Provisio	99.35
cd04672		123	Nudix_Hydrolase_14 Members of the Nudix hydrolase	99.34
cd03672		145	Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalyt	99.34
PRK00241		256	nudC NADH pyrophosphatase; Reviewed	99.33
TIGR00586		128	mutt mutator mutT protein. All proteins in this fa	99.32
cd04667		112	Nudix_Hydrolase_10 Members of the Nudix hydrolase	99.31
cd04669		121	Nudix_Hydrolase_11 Members of the Nudix hydrolase	99.3
cd04661		132	MRP_L46 Mitochondrial ribosomal protein L46 (MRP L	99.29
PRK10729		202	nudF ADP-ribose pyrophosphatase NudF; Provisional	99.29
PLN02709		222	nudix hydrolase	99.29
cd04686		131	Nudix_Hydrolase_27 Members of the Nudix hydrolase	99.27
TIGR00052		185	nudix-type nucleoside diphosphatase, YffH/AdpP fam	99.26
PRK08999		312	hypothetical protein; Provisional	99.24
cd04511		130	Nudix_Hydrolase_4 Members of the Nudix hydrolase s	99.22
COG1051		145	ADP-ribose pyrophosphatase [Nucleotide transport a	99.22
cd04662		126	Nudix_Hydrolase_5 Members of the Nudix hydrolase s	99.18
PRK05379		340	bifunctional nicotinamide mononucleotide adenylylt	99.14
PRK15009		191	GDP-mannose pyrophosphatase NudK; Provisional	99.12
TIGR02705		156	nudix_YtkD nucleoside triphosphatase YtkD. The fun	99.11
PLN03143		291	nudix hydrolase; Provisional	99.02
COG2816		279	NPY1 NTP pyrophosphohydrolases containing a Zn-fin	98.97
KOG3069		246	consensus Peroxisomal NUDIX hydrolase [Replication	98.93
cd04665		118	Nudix_Hydrolase_8 Members of the Nudix hydrolase s	98.91
COG0494		161	MutT NTP pyrophosphohydrolases including oxidative	98.91
cd04663		126	Nudix_Hydrolase_6 Members of the Nudix hydrolase s	98.88
cd04674		118	Nudix_Hydrolase_16 Members of the Nudix hydrolase	98.69
KOG3084		345	consensus NADH pyrophosphatase I of the Nudix fami	98.69
cd03670		186	ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase)	98.57
KOG3041		225	consensus Nucleoside diphosphate-sugar hydrolase o	98.54
cd03431		118	DNA_Glycosylase_C DNA glycosylase (MutY in bacteri	98.35
KOG2839		145	consensus Diadenosine and diphosphoinositol polyph	98.32
KOG0648		295	consensus Predicted NUDIX hydrolase FGF-2 and rela	97.7
COG4112		203	Predicted phosphoesterase (MutT family) [General f	97.11
PF14815		114	NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3	97.05
COG4119		161	Predicted NTP pyrophosphohydrolase [DNA replicatio	96.68
KOG4195		275	consensus Transient receptor potential-related cha	94.35
KOG4432		405	consensus Uncharacterized NUDIX family hydrolase [	85.1
KOG4432		405	consensus Uncharacterized NUDIX family hydrolase [	83.17

>PLN02839 nudix hydrolase	Back alignment and domain information

Probab=100.00  E-value=6.8e-93  Score=701.87  Aligned_cols=349  Identities=60%  Similarity=1.078  Sum_probs=325.2

Q ss_pred             cceeeeeecccccccccccceecccccccccccccccccceeccCCCCCCCCccchHHHHHHHHHhcCCCCCCCCeeeEE
Q 016606           37 FPVRFSVHSSAKLTTSIRSLRVDTASISYRSSCTFTWDDVFRVSQPEYSPDDSSDLRGYFEKIKICNRGSEMQSEFFPFI  116 (386)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cn~~~~~~~~~~pf~  116 (386)
                      +|+ |...|++.+.++++..+...+--+-++++|||||||+|++++||++++++++++|+++|++||++..+++.|.||+
T Consensus        22 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~cn~~~~~~~~~~Pf~  100 (372)
T PLN02839         22 IPT-LRWRSSSMSRSPLRHSRAVSAATTVPISSSFTWDDVIETGRAEYVPQNSSDLTGFLEKVDRCNRGSEKLGEFIPFV  100 (372)
T ss_pred             cee-eEeecccccCCCCccccceeeEEeecccccccHHHHHhhcccccCccccchhhhhHHHHHHhhccccccccccCeE
Confidence            677 8888888888888666555544456788999999999999999999999999999999999999976778999999


Q ss_pred             ECCEEEeeecHHHHHHhhcCCCeEEEeCCCC--CcccceEEeccCCCCHHHHHHHHHHHHHHHHHcCCCCCCCcceeecc
Q 016606          117 IEDQVAGYTHNRFASHLRKYDDVFIYSGNNG--GRFGSHVKLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVA  194 (386)
Q Consensus       117 ~~g~~vG~i~p~~~~~L~~~~~~f~~~~~~~--~~~~~~v~L~~~~~~~~~rt~~~~~v~~~l~~~g~~~gwr~E~~~V~  194 (386)
                      ++|++||||+|.++++|.+|+++|.+.++++  .....+|+|.+.+.++++||+++++++++|+++|+++|||||+|+|+
T Consensus       101 v~gq~VG~I~~~~~~~L~~~~~vF~~~~~~~~~~~~~~~V~L~~~~~t~~~Rt~al~~v~~~lr~~g~~~gWRnE~y~V~  180 (372)
T PLN02839        101 IEEQIVGYIHKGFTEYLREFHDIFTFSQNGSCPDRVDGHVTLNLMLQKPEDRTRAVADVIKILGDKGIIPGIRNELYPVK  180 (372)
T ss_pred             ECCEEEEEECHHHHHHHhhCccceeeccccccccccCceEEEecCCCCHHHHHHHHHHHHHHHHHcCCCCCcccCccccc
Confidence            9999999999999999999999999864321  12246899999999999999999999999999999999999999999


Q ss_pred             cCCCCceeEEEeccccccCCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHHHHHHHHh
Q 016606          195 STFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEE  274 (386)
Q Consensus       195 ~~~g~~~l~~ieRaa~~~~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eAa~REl~E  274 (386)
                      +.+|.++++.|||+++++||+.+||||||||+.++++++|||+|||.+|++||||||++|||||.+||++.++++||++|
T Consensus       181 ~~~~~~~l~~iERaA~~lfGi~tyGVHlNGyv~~~g~~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~E  260 (372)
T PLN02839        181 PSFNAPVFFSLERAAAPYFGIKGYGVHMNGYVERDGQKFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEE  260 (372)
T ss_pred             cCCCCcceEEEeeccccccCceeEEEEEEEEEecCCCeEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHH
Confidence            88888999999999999999999999999999877888999999999999999999999999999999999999999999


Q ss_pred             hhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCCCCCCCcHH
Q 016606          275 EAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSL  354 (386)
Q Consensus       275 EaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~fkpn~al  354 (386)
                      ||||+.+..++++++|+++|.+..+.++++|++|+||+++|++++|+++||||++|.+|+++|+.+.+.++++|||||++
T Consensus       261 EAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YDLeLP~df~P~~qDGEVe~F~Lm~v~EV~~~l~~~~~fKpn~aL  340 (372)
T PLN02839        261 EAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYDLELPQDFVPKNQDGEVESFKLIPVAQVANVIRKTSFFKANCSL  340 (372)
T ss_pred             HcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEeeeecCCccccCCCccceeEEEEecHHHHHHHHHcCCCCCcccHH
Confidence            99999887777999999999988888899999999999999999999999999999999999999999987679999999


Q ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHhcccCCCC
Q 016606          355 AIIDFLFRHGYIRPEYFGYLDLLQSLRRGDFS  386 (386)
Q Consensus       355 Vlldfl~RhG~i~p~~~~y~ei~~~l~r~~~~  386 (386)
                      |++|||+|||+|+||+|+|+||++|||+|+|+
T Consensus       341 ViiDFLiRhG~Itpe~p~y~ei~~rlh~g~~~  372 (372)
T PLN02839        341 VIIDFLFRHGFIRPESSGYLDLYRRLRNGDCS  372 (372)
T ss_pred             HHHHHHHHcCCCCCCCCCHHHHHHHhhcCCCC
Confidence            99999999999999999999999999999997

>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]	Back alignment and domain information

>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway	Back alignment and domain information

>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional	Back alignment and domain information

>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1	Back alignment and domain information

>PRK15393 NUDIX hydrolase YfcD; Provisional	Back alignment and domain information

>PLN02552 isopentenyl-diphosphate delta-isomerase	Back alignment and domain information

>PLN02791 Nudix hydrolase homolog	Back alignment and domain information

>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]	Back alignment and domain information

>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	Back alignment and domain information

>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes	Back alignment and domain information

>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK15472 nucleoside triphosphatase NudI; Provisional	Back alignment and domain information

>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []	Back alignment and domain information

>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function	Back alignment and domain information

>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional	Back alignment and domain information

>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities	Back alignment and domain information

>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	Back alignment and domain information

>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional	Back alignment and domain information

>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily	Back alignment and domain information

>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	Back alignment and domain information

>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP	Back alignment and domain information

>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK10707 putative NUDIX hydrolase; Provisional	Back alignment and domain information

>PRK00714 RNA pyrophosphohydrolase; Reviewed	Back alignment and domain information

>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional	Back alignment and domain information

>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PLN02325 nudix hydrolase	Back alignment and domain information

>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional	Back alignment and domain information

>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional	Back alignment and domain information

>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex	Back alignment and domain information

>PRK00241 nudC NADH pyrophosphatase; Reviewed	Back alignment and domain information

>TIGR00586 mutt mutator mutT protein	Back alignment and domain information

>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily	Back alignment and domain information

>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional	Back alignment and domain information

>PLN02709 nudix hydrolase	Back alignment and domain information

>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family	Back alignment and domain information

>PRK08999 hypothetical protein; Provisional	Back alignment and domain information

>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]	Back alignment and domain information

>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional	Back alignment and domain information

>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional	Back alignment and domain information

>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD	Back alignment and domain information

>PLN03143 nudix hydrolase; Provisional	Back alignment and domain information

>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]	Back alignment and domain information

>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]	Back alignment and domain information

>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	Back alignment and domain information

>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]	Back alignment and domain information

>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P	Back alignment and domain information

>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]	Back alignment and domain information

>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread AoxoG residues to CG by removing the inappropriately paired adenine base from the DNA backbone	Back alignment and domain information

>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]	Back alignment and domain information

>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]	Back alignment and domain information

>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]	Back alignment and domain information

>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A	Back alignment and domain information

>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]	Back alignment and domain information

>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]	Back alignment and domain information

>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		386
3dup_A		300	Crystal Structure Of MuttNUDIX FAMILY HYDROLASE FRO		2e-56

>pdb|3DUP|A Chain A, Crystal Structure Of MuttNUDIX FAMILY HYDROLASE FROM RHODOSPIRILLUM Rubrum Atcc 11170 Length = 300

Back alignment and structure

Iteration: 1

Score = 216 bits (549), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 116/288 (40%), Positives = 161/288 (55%), Gaps = 10/288 (3%) Query: 95 YFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHV 154 + + ++ CN + S F F+IE + G+ A L+ + VF + + V Sbjct: 5 FLKHVQDCN--THDLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTRDA-------V 55 Query: 155 KLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFG 214 L++ L+T RTR V +V+ LA+E ++P + ELY V ++G P LDRA P FG Sbjct: 56 LLSASLRTPQSRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLXLLDRAVVPTFG 115 Query: 215 IKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEE 274 ++AY V LNGYV LWIG+RS KS PG LD GG P ++ +N+IKEC E Sbjct: 116 VRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNXVAGGQPADLSLRQNLIKECAE 175 Query: 275 EAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMP 334 EA +P +++ +A PVGA++Y + K D +F YDL LPEDF P N DGE F L P Sbjct: 176 EADLPEALARQAIPVGAITYCXESPAGIKPDTLFLYDLALPEDFRPHNTDGEXADFXLWP 235 Query: 335 VAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIRPEYF-GYLDLLQSLR 381 A V +R TE FK N +L +IDF RHG I P+ Y ++L LR Sbjct: 236 AAKVVEAVRTTEAFKFNVNLTVIDFAIRHGLIDPDNEPDYQEILAGLR 283

PyMOL of 3dup

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		386
3dup_A		300	MUTT/nudix family protein; nudix superfamily hydro	1e-91
1q27_A		171	Putative nudix hydrolase DR0079; radiation resista	7e-11
2fkb_A		180	Putative nudix hydrolase YFCD; putative protein, M	1e-08
1hzt_A		190	Isopentenyl diphosphate delta-isomerase; dimethyla	2e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300	Back alignment and structure

 Score =  276 bits (708), Expect = 1e-91
 Identities = 116/289 (40%), Positives = 162/289 (56%), Gaps = 10/289 (3%)

Query: 95  YFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHV 154
           + + ++ CN      S F  F+IE +  G+     A  L+ +  VF  + +        V
Sbjct: 5   FLKHVQDCNT--HDLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTRD-------AV 55

Query: 155 KLNSKLKTADERTRVVGEVIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFG 214
            L++ L+T   RTR V +V+  LA+E ++P  + ELY V  ++G P    LDRA  P FG
Sbjct: 56  LLSASLRTPQSRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFG 115

Query: 215 IKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGENIIKECEE 274
           ++AY V LNGYV       LWIG+RS  KS  PG LD +  GG P  ++  +N+IKEC E
Sbjct: 116 VRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAE 175

Query: 275 EAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMP 334
           EA +P +++ +A PVGA++Y   +    K D +F YDL LPEDF P N DGE+  F L P
Sbjct: 176 EADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWP 235

Query: 335 VAHVANVIRRTEFFKPNCSLAIIDFLFRHGYIRPEYF-GYLDLLQSLRR 382
            A V   +R TE FK N +L +IDF  RHG I P+    Y ++L  LR 
Sbjct: 236 AAKVVEAVRTTEAFKFNVNLTVIDFAIRHGLIDPDNEPDYQEILAGLRG 284

PyMOL of 3dup

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171	Back alignment and structure

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180	Back alignment and structure

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		386
3dup_A		300	MUTT/nudix family protein; nudix superfamily hydro	100.0
2pny_A		246	Isopentenyl-diphosphate delta-isomerase 2; caroten	99.94
2dho_A		235	Isopentenyl-diphosphate delta-isomerase 1; alpha/b	99.94
1hzt_A		190	Isopentenyl diphosphate delta-isomerase; dimethyla	99.89
2fkb_A		180	Putative nudix hydrolase YFCD; putative protein, M	99.89
1q27_A		171	Putative nudix hydrolase DR0079; radiation resista	99.86
1sjy_A		159	MUTT/nudix family protein; nudix fold, alpha-beta-	99.75
1ktg_A		138	Diadenosine tetraphosphate hydrolase; nudix, AMP,	99.63
3shd_A		153	Phosphatase NUDJ; nudix fold, nudix motif, hydrola	99.62
2b0v_A		153	Nudix hydrolase; structural genomics, PSI, protein	99.61
3grn_A		153	MUTT related protein; structural genomics, hydrola	99.6
3gwy_A		140	Putative CTP pyrophosphohydrolase; structural geno	99.6
1v8y_A		170	ADP-ribose pyrophosphatase; nudix motif, loop-heli	99.59
3o6z_A		191	GDP-mannose pyrophosphatase NUDK; nudix, hydrolase	99.59
3i7u_A		134	AP4A hydrolase; nudix protein, diadenosine polypho	99.58
3r03_A		144	Nudix hydrolase; structural genomics, PSI2, protei	99.58
3u53_A		155	BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical];	99.58
1nqz_A		194	COA pyrophosphatase (MUTT/nudix family protein); D	99.58
2pbt_A		134	AP4A hydrolase; nudix protein, diadenosine polypho	99.56
3hhj_A		158	Mutator MUTT protein; niaid, ssgcid, decode, UW, S	99.56
1rya_A		160	GDP-mannose mannosyl hydrolase; GDP-glucose, nudix	99.56
3oga_A		165	Nucleoside triphosphatase NUDI; salmonella enteric	99.56
2yvp_A		182	NDX2, MUTT/nudix family protein; nudix protein, AD	99.56
3e57_A		211	Uncharacterized protein TM1382; structural genomic	99.56
3son_A		149	Hypothetical nudix hydrolase; structural genomics,	99.56
2o1c_A		150	DATP pyrophosphohydrolase; nudix NTP hydrolase NTP	99.53
3i9x_A		187	MUTT/nudix family protein; structural genomics, hy	99.53
3eds_A		153	MUTT/nudix family protein; MUT/nudix protein, prot	99.53
4dyw_A		157	MUTT/nudix family protein; structural genomics, ni	99.53
2w4e_A		145	MUTT/nudix family protein; ADP-ribose pyrophosphat	99.52
1g0s_A		209	Hypothetical 23.7 kDa protein in ICC-TOLC intergen	99.51
2rrk_A		140	ORF135, CTP pyrophosphohydrolase; NMR {Escherichia	99.51
1vcd_A		126	NDX1; nudix protein, diadenosine polyphosphate, AP	99.51
3exq_A		161	Nudix family hydrolase; protein structure initiati	99.51
1vhz_A		198	ADP compounds hydrolase NUDE; structural genomics;	99.5
2pqv_A		154	MUTT/nudix family protein; structu genomics, PSI-2	99.5
3ees_A		153	Probable pyrophosphohydrolase; nudix, RNA pyrophos	99.5
1mut_A		129	MUTT, nucleoside triphosphate pyrophosphohydrolase	99.48
1mk1_A		207	ADPR pyrophosphatase; nudix hydrolase, adprase, ad	99.48
2azw_A		148	MUTT/nudix family protein; MUTT/nudix ,enterococcu	99.47
3gg6_A		156	Nudix motif 18, nucleoside diphosphate-linked moie	99.47
3h95_A		199	Nucleoside diphosphate-linked moiety X motif 6; NU	99.47
3fcm_A		197	Hydrolase, nudix family; protein structure initiat	99.47
2b06_A		155	MUTT/nudix family protein; structural genomics, P	99.46
2jvb_A		146	Protein PSU1, mRNA-decapping enzyme subunit 2; DCP	99.46
3q91_A		218	Uridine diphosphate glucose pyrophosphatase; struc	99.46
1f3y_A		165	Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase	99.45
3q93_A		176	7,8-dihydro-8-oxoguanine triphosphatase; structura	99.45
3id9_A		171	MUTT/nudix family protein; hydrolase, protein stru	99.43
2yyh_A		139	MUTT domain, 8-OXO-DGTPase domain; nudix family pr	99.42
2fml_A		273	MUTT/nudix family protein; structural genomics, PS	99.41
3f6a_A		159	Hydrolase, nudix family; protein structure initiat	99.41
2fvv_A		194	Diphosphoinositol polyphosphate phosphohydrolase 1	99.39
1x51_A		155	A/G-specific adenine DNA glycosylase; nudix domain	99.37
2kdv_A		164	RNA pyrophosphohydrolase; nudix family, magnesium,	99.37
3gz5_A		240	MUTT/nudix family protein; DNA binding protein, nu	99.36
2dsc_A		212	ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP	99.35
1vk6_A		269	NADH pyrophosphatase; 1790429, structural genomics	99.35
2fb1_A		226	Conserved hypothetical protein; structural genomic	99.34
3cng_A		189	Nudix hydrolase; structural genomics, APC7497, PSI	99.34
3fk9_A		188	Mutator MUTT protein; structural genomics, hydrola	99.34
2qjt_B		352	Nicotinamide-nucleotide adenylyltransferase; two i	99.34
1u20_A		212	U8 snoRNA-binding protein X29; modified nudix hydr	99.33
2qjo_A		341	Bifunctional NMN adenylyltransferase/nudix hydrol;	99.32
3q1p_A		205	Phosphohydrolase (MUTT/nudix family protein); asym	99.3
3o8s_A		206	Nudix hydrolase, ADP-ribose pyrophosphatase; struc	99.3
2a6t_A		271	SPAC19A8.12; alpha/beta/alpha, RNA binding protein	99.29
3fjy_A		364	Probable MUTT1 protein; dimer, protein structure i	99.26
3f13_A		163	Putative nudix hydrolase family member; structural	99.26
1k2e_A		156	Nudix homolog; nudix/MUTT-like fold, mixed alpha/b	99.24
3qsj_A		232	Nudix hydrolase; structural genomics, PSI-biology,	99.21
3fsp_A		369	A/G-specific adenine glycosylase; protein-DNA comp	99.14
2xsq_A		217	U8 snoRNA-decapping enzyme; hydrolase, mRNA decapp	99.08
1q33_A		292	Pyrophosphatase, ADP-ribose pyrophosphatase; nudix	98.99
3kvh_A		214	Protein syndesmos; NUDT16-like, NUDT16L1, nudix, R	98.55
3bho_A		208	Cleavage and polyadenylation specificity factor su	97.78
3rh7_A		321	Hypothetical oxidoreductase; FMN-binding split bar	97.5

>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural protein structure initiative, PSI; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170}	Back alignment and structure

Probab=100.00  E-value=1.2e-70  Score=537.53  Aligned_cols=281  Identities=41%  Similarity=0.721  Sum_probs=265.1

Q ss_pred             HHHHHHHHHhcCCCCCCCCeeeEEECCEEEeeecHHHHHHhhcCCCeEEEeCCCCCcccceEEeccCCCCHHHHHHHHHH
Q 016606           93 RGYFEKIKICNRGSEMQSEFFPFIIEDQVAGYTHNRFASHLRKYDDVFIYSGNNGGRFGSHVKLNSKLKTADERTRVVGE  172 (386)
Q Consensus        93 ~~~~~~i~~cn~~~~~~~~~~pf~~~g~~vG~i~p~~~~~L~~~~~~f~~~~~~~~~~~~~v~L~~~~~~~~~rt~~~~~  172 (386)
                      |+|+++|++||+|  .++.|+||+++|++||||+|.+++.|.+|+..|.++       .+.|+|.+.+.++++||+++++
T Consensus         3 m~~l~~i~~~~~~--~~~~~~~f~~~g~~~G~i~~~~~~~l~~~~~~~~~~-------~~~v~l~~~~~~~~~rt~~~~~   73 (300)
T 3dup_A            3 LSFLKHVQDCNTH--DLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVT-------RDAVLLSASLRTPQSRTRAVAD   73 (300)
T ss_dssp             CCHHHHHHHTTCC--CCTTEEEEEETTEEEEEEEHHHHHHHTTCTTTEEEC-------SSEEEECTTCCSHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCC--ChhhcEEEEECCEEEEeECHHHHHHHhcCCCceEee-------CCEEEEecCCCCHHHHHHHHHH
Confidence            6899999999999  578899999999999999999999999999999876       3579999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCcceeecccCCCCceeEEEeccccccCCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCcccc
Q 016606          173 VIKCLAEEELIPDIQNELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDI  252 (386)
Q Consensus       173 v~~~l~~~g~~~gwr~E~~~V~~~~g~~~l~~ieRaa~~~~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~  252 (386)
                      +++.|+++|+++|||||+|+|||++|+++++.+||++++++|+.|||||+++|+.++++.+|||||||.+|++|||+||+
T Consensus        74 ~~~~~~~~g~~~gwr~E~~~V~~~~~~~~~~~~eR~~~~~~G~~~~~vh~~~~~~~~~~~~lll~rRs~~K~~~PG~wd~  153 (300)
T 3dup_A           74 VVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDN  153 (300)
T ss_dssp             HHHHHHHTTSSCCCCSCEEEECSSTTSCCCEEEEGGGTGGGTCCEEEEEEEEEESCGGGCEEEEEEECTTCSSSTTCEEE
T ss_pred             HHHHHHHcCCCCccccccEEeecCCCCeeeEEEEhhhccccceEEEEEEEEEEEecCCeeEEEEEeCCCcccCCCCcccc
Confidence            99999999999999999999999998889999999999999999999999999976556699999999999999999999


Q ss_pred             ccccCCCCCCCHHHHHHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEE
Q 016606          253 LAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQL  332 (386)
Q Consensus       253 ~vaGgV~aGEs~~eAa~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~w  332 (386)
                      +||||+++||++.+||+||+.||+||+.+..+.+.++|.++|.+..+.|+.+|++|+|++.++.++.|.++++||++++|
T Consensus       154 svaG~i~~GEs~~eaA~REl~EElGI~~~~~~~l~~~g~i~y~~~~~~G~~~E~~~vy~~~l~~~~~p~~~~~EV~~~~~  233 (300)
T 3dup_A          154 MVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFML  233 (300)
T ss_dssp             SEEEECCTTSCHHHHHHHHHHHHHCCCHHHHTTCEEEEEEEEEEEETTEEEEEEEEEEEEECCTTCCCCCTTSSEEEEEE
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHhCCChhhhhhccccceEEEEEecCCCeEEEEEEEEEEEecCCCcCCCCchHhheEEE
Confidence            99999999999999999999999999987665678899999988777778899999999999988889999999999999


Q ss_pred             EcHHHHHHHHHc-CCCCCCCcHHHHHHHHHHcCCCCCCC-CCHHHHHHhcccC
Q 016606          333 MPVAHVANVIRR-TEFFKPNCSLAIIDFLFRHGYIRPEY-FGYLDLLQSLRRG  383 (386)
Q Consensus       333 v~~dEv~~~l~~-~~~fkpn~alVlldfl~RhG~i~p~~-~~y~ei~~~l~r~  383 (386)
                      ++++|+.+++.+ + .|||||++|++|||+|||+|+|+| |+|.+|+++|||+
T Consensus       234 v~~~El~~~l~~pg-~F~p~~~lV~ldfl~RhG~i~~~~~~~y~~i~~~l~r~  285 (300)
T 3dup_A          234 WPAAKVVEAVRTTE-AFKFNVNLTVIDFAIRHGLIDPDNEPDYQEILAGLRGR  285 (300)
T ss_dssp             EEHHHHHHHHHHCC-CBCTTHHHHHHHHHHHTTSSCTTTSTTHHHHHHHTBCC
T ss_pred             ECHHHHHHHHhcCC-CcCccHHHHHHHHHHHhCCcCCccCCCHHHHHHHhccC
Confidence            999999999998 5 799999999999999999999997 8999999999986

PyMOL of 3dup

>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isomerase isoprene biosynthesis, lipid synthesis; HET: GOL; 1.81A {Homo sapiens}	Back alignment and structure

>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*	Back alignment and structure

>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*	Back alignment and structure

>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, escherichia coli putative nudix hydrolase, PSI; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2	Back alignment and structure

>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A	Back alignment and structure

>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A*	Back alignment and structure

>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A*	Back alignment and structure

>3shd_A Phosphatase NUDJ; nudix fold, nudix motif, hydrolase, (D)NDP/(D)NTP binding, dephosphorylation; 2.50A {Escherichia coli} PDB: 3dku_A	Back alignment and structure

>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1	Back alignment and structure

>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 1.70A {Methanosarcina mazei}	Back alignment and structure

>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.00A {Bacteroides fragilis} SCOP: d.113.1.0	Back alignment and structure

>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A	Back alignment and structure

>3o6z_A GDP-mannose pyrophosphatase NUDK; nudix, hydrolase, biofilm; 2.05A {Escherichia coli} SCOP: d.113.1.1 PDB: 3o52_A* 1viu_A 3o69_A 3o61_A	Back alignment and structure

>3i7u_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, S genomics, NPPSFA, national project on protein structural AN functional analyses; HET: PGE PG4; 1.80A {Aquifex aeolicus} PDB: 3i7v_A*	Back alignment and structure

>3r03_A Nudix hydrolase; structural genomics, PSI2, protein structure INIT NEW YORK SGX research center for structural genomics, nysgx; HET: ADP; 2.49A {Rhodospirillum rubrum} SCOP: d.113.1.0	Back alignment and structure

>3u53_A BIS(5'-nucleosyl)-tetraphosphatase [asymmetrical]; hydrolase; 2.71A {Homo sapiens} PDB: 1xsa_A 1xsb_A 1xsc_A*	Back alignment and structure

>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A	Back alignment and structure

>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrol structural genomics; 2.10A {Bartonella henselae}	Back alignment and structure

>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*	Back alignment and structure

>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A	Back alignment and structure

>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrol structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus} PDB: 2yvn_A 2yvm_A* 2yvo_A*	Back alignment and structure

>3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima}	Back alignment and structure

>3son_A Hypothetical nudix hydrolase; structural genomics, joint center for structural GENO JCSG, protein structure initiative, PSI-biology; HET: MSE; 1.71A {Listeria monocytogenes}	Back alignment and structure

>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneo triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A	Back alignment and structure

>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure INI NEW YORK SGX research center for structural genomics; 2.20A {Listeria innocua}	Back alignment and structure

>4dyw_A MUTT/nudix family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Burkholderia pseudomallei}	Back alignment and structure

>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans}	Back alignment and structure

>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A	Back alignment and structure

>2rrk_A ORF135, CTP pyrophosphohydrolase; NMR {Escherichia coli}	Back alignment and structure

>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, thermus THER HB8, hydrolase, riken structural genomics/proteomics initia RSGI; 1.70A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A*	Back alignment and structure

>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367}	Back alignment and structure

>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*	Back alignment and structure

>2pqv_A MUTT/nudix family protein; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 1.63A {Streptococcus pneumoniae}	Back alignment and structure

>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A*	Back alignment and structure

>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*	Back alignment and structure

>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine DI ribose, RV1700, hydrolase; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A*	Back alignment and structure

>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis} SCOP: d.113.1.1	Back alignment and structure

>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens}	Back alignment and structure

>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural GENO structural genomics consortium, SGC; HET: FLC; 1.70A {Homo sapiens}	Back alignment and structure

>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124}	Back alignment and structure

>2b06_A MUTT/nudix family protein; structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1	Back alignment and structure

>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae}	Back alignment and structure

>3q91_A Uridine diphosphate glucose pyrophosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 2.70A {Homo sapiens}	Back alignment and structure

>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*	Back alignment and structure

>3q93_A 7,8-dihydro-8-oxoguanine triphosphatase; structural genomics, structural genomics consortium, SGC, NU MUTT-like, hydrolase, magnesium binding; 1.80A {Homo sapiens} PDB: 1iry_A 3zr0_A* 3zr1_A	Back alignment and structure

>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str}	Back alignment and structure

>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aquifex aeolicus}	Back alignment and structure

>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6	Back alignment and structure

>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124}	Back alignment and structure

>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A 3mcf_A*	Back alignment and structure

>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3	Back alignment and structure

>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A	Back alignment and structure

>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A*	Back alignment and structure

>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A 3aca_A* 3ac9_A* 3l85_A*	Back alignment and structure

>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A	Back alignment and structure

>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; 2.50A {Bacteroides thetaiotaomicron} SCOP: a.4.5.68 d.113.1.6	Back alignment and structure

>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}	Back alignment and structure

>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans}	Back alignment and structure

>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B	Back alignment and structure

>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold, hydrolase; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A*	Back alignment and structure

>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrol; two individual domains, hydrolase; HET: APR NAD; 2.60A {Synechocystis SP}	Back alignment and structure

>3q1p_A Phosphohydrolase (MUTT/nudix family protein); asymmetric dimer, RNA exonuclease, CDP-CHO pyrophosphatase; 1.80A {Bacillus cereus} PDB: 3q4i_A	Back alignment and structure

>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.27A {Streptococcus suis}	Back alignment and structure

>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B*	Back alignment and structure

>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}	Back alignment and structure

>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum}	Back alignment and structure

>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative NUDI hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A	Back alignment and structure

>3qsj_A Nudix hydrolase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Alicyclobacillus acidocaldarius subsp}	Back alignment and structure

>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*	Back alignment and structure

>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A 3mgm_A	Back alignment and structure

>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A*	Back alignment and structure

>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA structural genomics consortium, SGC, RNA degradation, RNA B protein; 1.70A {Homo sapiens}	Back alignment and structure

>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A	Back alignment and structure

>3rh7_A Hypothetical oxidoreductase; FMN-binding split barrel, nudix, structural genomics, joint for structural genomics, JCSG; HET: FMN; 3.00A {Sinorhizobium meliloti}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		386
d2fkba1		161	d.113.1.2 (A:8-168) Hypothetical protein YfcD {Esc	1e-09
d1hzta_		153	d.113.1.2 (A:) Isopentenyl diphosphate isomerase {	3e-08
d2o5fa1		162	d.113.1.2 (A:7-168) Hypothetical protein DR0079 {D	6e-08
d1sjya_		158	d.113.1.1 (A:) Hypothetical protein DR1025 {Deinoc	4e-07
d2a6ta2		151	d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p c	3e-04

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]} Length = 161	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

 Score = 54.4 bits (130), Expect = 1e-09
 Identities = 35/175 (20%), Positives = 59/175 (33%), Gaps = 16/175 (9%)

Query: 189 ELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPG 248
           E   + +     I     R       ++  A  +   V  DG   + + +R++ K   PG
Sbjct: 3   EWVDIVNEENEVIA-QASREQMRAQCLRHRATYI---VVHDGMGKILVQRRTETKDFLPG 58

Query: 249 MLDILAGGGLPHGIACGENIIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIF 308
           MLD  AGG +       E+  +E EEE GI           G   +         R    
Sbjct: 59  MLDATAGGVVQADEQLLESARREAEEELGIAGV---PFAEHGQFYFE----DKNCRVWGA 111

Query: 309 CYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEFFKPNCSLAIIDFLFRH 363
            +       F    Q+ EV     +    +     R + F P+   A+  ++ R+
Sbjct: 112 LFSCVSHGPFAL--QEDEVSEVCWLTPEEIT---ARCDEFTPDSLKALALWMKRN 161

PyMOL of d2fkba1

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]} Length = 153	Back information, alignment and structure

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]} Length = 162	Back information, alignment and structure

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]} Length = 158	Back information, alignment and structure

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]} Length = 151	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		386
d2fkba1		161	Hypothetical protein YfcD {Escherichia coli [TaxId	99.96
d2o5fa1		162	Hypothetical protein DR0079 {Deinococcus radiodura	99.96
d1hzta_		153	Isopentenyl diphosphate isomerase {Escherichia col	99.9
d1sjya_		158	Hypothetical protein DR1025 {Deinococcus radiodura	99.76
d1puna_		129	Nucleoside triphosphate pyrophosphorylase (MutT) {	99.64
d1ryaa_		160	GDP-mannose mannosyl hydrolase NudD {Escherichia c	99.61
d2b0va1		146	Hypothetical protein NE0184 {Nitrosomonas europaea	99.6
d1ktga_		137	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.58
d2b06a1		155	Hypothetical protein SP1235 (spr1115) {Streptococc	99.56
d1vcda1		126	AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId:	99.54
d1nqza_		187	Coenzyme A pyrophosphatase {Deinococcus radioduran	99.52
d1vk6a2		131	NADH pyrophosphatase {Escherichia coli [TaxId: 562	99.51
d1jkna_		165	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.48
d1irya_		156	7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Hum	99.44
d2fvva1		135	Diphosphoinositol polyphosphate phosphohydrolase {	99.44
d1v8ya_		158	ADP-ribose pyrophosphatase {Thermus thermophilus [	99.43
d2fb1a2		147	Hypothetical protein BT0354, N-terminal domain {Ba	99.43
d2azwa1		147	Hypothetical protein EF1141 {Enterococcus faecalis	99.43
d1xsba_		153	Diadenosine tetraphosphate hydrolase (Ap4A hydrola	99.38
d2a6ta2		151	mRNA decapping enzyme Dcp2p catalytic domain {Schi	99.37
d2fmla2		202	Hypothetical protein EF2700, N-terminal domain {En	99.35
d1vhza_		186	ADP compounds hydrolase NudE {Escherichia coli [Ta	99.35
d1g0sa_		209	ADP-ribose pyrophosphatase {Escherichia coli [TaxI	99.32
d1k2ea_		152	Hypothetical protein PAE3301 {Archaeon Pyrobaculum	99.28
d1viua_		189	ADP-ribose pyrophosphatase homologue YffH {Escheri	99.28
d1mqea_		202	ADP-ribose pyrophosphatase {Mycobacterium tubercul	99.28
d1rrqa2		127	Adenine glycosylase MutY, C-terminal domain {Bacil	99.16
d1u20a1		196	U8 snorna-binding protein x29 {African clawed frog	99.12
d1x51a1		142	A/G-specific adenine DNA glycosylase {Human (Homo	98.68
d1q33a_		292	NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {	98.65

>d2fkba1 d.113.1.2 (A:8-168) Hypothetical protein YfcD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nudix
superfamily: Nudix
family: IPP isomerase-like
domain: Hypothetical protein YfcD
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1e-28  Score=217.20  Aligned_cols=160  Identities=21%  Similarity=0.191  Sum_probs=132.7

Q ss_pred             cceeecccCCCCceeEEEeccccccCCccceeeeEEEEEEECCceEEEEEEeCCCCCCCCCccccccccCCCCCCCHHHH
Q 016606          188 NELYPVASTFGSPIFFSLDRAAAPYFGIKAYAVPLNGYVEKDGQKFLWIGKRSQVKSTYPGMLDILAGGGLPHGIACGEN  267 (386)
Q Consensus       188 ~E~~~V~~~~g~~~l~~ieRaa~~~~Gi~~~gVHl~~yv~~dg~~~llIqrRS~~K~t~PG~wD~~vaGgV~aGEs~~eA  267 (386)
                      .|+++|+|.+| ++++.++|..++..|+.|.+||+..+   |++++|||+||+..|..|||+||+++||+++.|||+++|
T Consensus         2 ~E~~~i~d~~~-~~ig~~~R~~~~~~~~~h~~v~v~v~---~~~g~vLl~rR~~~~~~~pg~w~~~~GG~ie~gEs~~~a   77 (161)
T d2fkba1           2 TEWVDIVNEEN-EVIAQASREQMRAQCLRHRATYIVVH---DGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLES   77 (161)
T ss_dssp             CCEEEEECTTS-CEEEEEEHHHHHHHTCCEEEEEEEEE---CSSSCEEEEEECSSCSSSTTCEESSBCCBCBTTCCHHHH
T ss_pred             cEEEEEECCCC-CEEeEEEHHHhhcCCCcEeEEEEEEE---eCCCCEEEEEecCccccccccccccccccccccCcHHHH
Confidence            59999999998 68899999999999999999998554   667799999999999999999999999999999999999


Q ss_pred             HHHHHHhhhCCCccccCCceeeEEEEEEeeCCCeeeeEEEEEEEEEcCCCcccCCCCCceeeEEEEcHHHHHHHHHcCCC
Q 016606          268 IIKECEEEAGIPRSISNRARPVGAVSYTDINGFSYKRDVIFCYDLKLPEDFVPMNQDGEVESFQLMPVAHVANVIRRTEF  347 (386)
Q Consensus       268 a~REl~EEaGL~~~~~~~l~~vg~isy~~~~~~gi~~ev~~vYdl~l~~d~~p~~~dgEV~~f~wv~~dEv~~~l~~~~~  347 (386)
                      |+||++||+||....   +..++.+.|....    .....++|.+....+  +.++++|+++++|++++|+.+++.   .
T Consensus        78 a~REl~EE~Gi~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~Ev~~~~w~~~~el~~~~~---~  145 (161)
T d2fkba1          78 ARREAEEELGIAGVP---FAEHGQFYFEDKN----CRVWGALFSCVSHGP--FALQEDEVSEVCWLTPEEITARCD---E  145 (161)
T ss_dssp             HHHHHHHHHCCBSCC---CEEEEEEEEEETT----EEEEEEEEEEECCCC--CCCCTTTEEEEEEECHHHHHTTGG---G
T ss_pred             HHHHHHHHhCCccce---eEEEEEEEeecCC----cEEEEEEEEEEECCC--CcCChhHeeEEEEEeHHHHhhhhh---c
Confidence            999999999998654   5566666554322    224556676665554  455678999999999999998775   4


Q ss_pred             CCCCcHHHHHHHHHHc
Q 016606          348 FKPNCSLAIIDFLFRH  363 (386)
Q Consensus       348 fkpn~alVlldfl~Rh  363 (386)
                      |+|+....+..|+.||
T Consensus       146 ~~P~~~~al~~~~~r~  161 (161)
T d2fkba1         146 FTPDSLKALALWMKRN  161 (161)
T ss_dssp             BCHHHHHHHHHHHHHC
T ss_pred             cCCcHHHHHHHHHhcC
Confidence            8898877777888775

PyMOL of d2fkba1

>d2o5fa1 d.113.1.2 (A:7-168) Hypothetical protein DR0079 {Deinococcus radiodurans str. R1 (Deinococcus radiodurans R1) [TaxId: 243230]}	Back information, alignment and structure

>d1hzta_ d.113.1.2 (A:) Isopentenyl diphosphate isomerase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1sjya_ d.113.1.1 (A:) Hypothetical protein DR1025 {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1puna_ d.113.1.1 (A:) Nucleoside triphosphate pyrophosphorylase (MutT) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1ryaa_ d.113.1.5 (A:) GDP-mannose mannosyl hydrolase NudD {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2b0va1 d.113.1.1 (A:4-149) Hypothetical protein NE0184 {Nitrosomonas europaea [TaxId: 915]}	Back information, alignment and structure

>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Caenorhabditis elegans [TaxId: 6239]}	Back information, alignment and structure

>d2b06a1 d.113.1.1 (A:1-155) Hypothetical protein SP1235 (spr1115) {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d1vcda1 d.113.1.1 (A:1-126) AP6A hydrolase Ndx1 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1nqza_ d.113.1.1 (A:) Coenzyme A pyrophosphatase {Deinococcus radiodurans [TaxId: 1299]}	Back information, alignment and structure

>d1vk6a2 d.113.1.4 (A:126-256) NADH pyrophosphatase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1jkna_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Narrow-leaved blue lupine (Lupinus angustifolius) [TaxId: 3871]}	Back information, alignment and structure

>d1irya_ d.113.1.1 (A:) 7,8-dihydro-8-oxoguanine triphosphatase Hmth1 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fvva1 d.113.1.1 (A:8-142) Diphosphoinositol polyphosphate phosphohydrolase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1v8ya_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2fb1a2 d.113.1.6 (A:3-149) Hypothetical protein BT0354, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}	Back information, alignment and structure

>d2azwa1 d.113.1.1 (A:2-148) Hypothetical protein EF1141 {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1xsba_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A hydrolase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2a6ta2 d.113.1.7 (A:95-245) mRNA decapping enzyme Dcp2p catalytic domain {Schizosaccharomyces pombe [TaxId: 4896]}	Back information, alignment and structure

>d2fmla2 d.113.1.6 (A:3-204) Hypothetical protein EF2700, N-terminal domain {Enterococcus faecalis [TaxId: 1351]}	Back information, alignment and structure

>d1vhza_ d.113.1.1 (A:) ADP compounds hydrolase NudE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1g0sa_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1k2ea_ d.113.1.1 (A:) Hypothetical protein PAE3301 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}	Back information, alignment and structure

>d1viua_ d.113.1.1 (A:) ADP-ribose pyrophosphatase homologue YffH {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1mqea_ d.113.1.1 (A:) ADP-ribose pyrophosphatase {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure

>d1rrqa2 d.113.1.3 (A:234-360) Adenine glycosylase MutY, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1u20a1 d.113.1.1 (A:14-209) U8 snorna-binding protein x29 {African clawed frog (Xenopus laevis) [TaxId: 8355]}	Back information, alignment and structure

>d1x51a1 d.113.1.3 (A:8-149) A/G-specific adenine DNA glycosylase {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1q33a_ d.113.1.1 (A:) NUDT9 (mitochondrial ADP-ribose pyrophosphatase) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure