Citrus Sinensis ID: 016615

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNDDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
cccHHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHHccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEccccccEEEEEEEEccccccEEEEEEccccccccccccEEcEEEccccccEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccEEEcccccEEccccccEEEEccccccccccccccEEEEEEEEcccEEEEEccccccHHHHHHHHHHccccccccc
ccHHHHHHHHcccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHcccEEEcEEEccccccccEEEEEEEEcccccEEEEEEEcccccEEEEEEEEEEEccccEEEEEEccHHHHccccccccEEEEEcccccEEEEEccccccccccccccccccEEccccccccccccccEEEEEEEEEEcccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccEEEccccEEEEEEccEEEEcEccEEEEEEcccccccccccccccEEEEEEEccEEEEEEcccccHHHHHHHHHHHHHcccccc
MTIKSIIHDMMwrrshrvvgdaadhdmaggssptccwanlPQELLREILAKIEAadsawpsrRSVVACAGVCRSWRQITKEIVkvpelsgyltfpisvkqpgprdyLLQCFIkrnrstqtYHLYLSLTNDDGKFLLAARKCRRATCTDYIISLhsddmskgsstylgklrsnflgtkfivydgqpphagakmtrsrSTRLanlkqvspripfgnysVAHISYELNvlgsrgprrmqcvmdsipasaiesggvaptqteflfsnadsfpsipffrsksnrsekflsgplacqkdgalvlrnkaprWHEQLQCWCLNFHGRVTVASVKNfqlvaspengpagleHEKIILQFGkvgkdlftmdyrypISAFQAFAICLSSfdtkiace
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEaadsawpsrrSVVACAGVCRSWRQITKEivkvpelsgyltfpisvkqpgpRDYLLQCFIKRNRSTQTYHLYLSLTNDDGKFLLAARKCRRATCTDYIIslhsddmskgSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTrlanlkqvspripfgnySVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNDDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
*****IIHDMMWRRSHRVVGDAAD**MAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNDDGKFLLAARKCRRATCTDYIISLHSDDM***SSTYLGKLRSNFLGTKFIVYDG**********************VSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPA*AI****VAPTQTEFLFSNADSFPSIPFF*********FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKI***
**IKS****************************************************************************************FPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNDDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAG************************NY*VAHISYELNVL**RGPR*********************************************************QKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNDDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPH*********STRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
********************************PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNDDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHA**********RLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIES******************************************KDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIAC*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNDDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
Q10LG8403 Tubby-like F-box protein yes no 0.997 0.955 0.675 1e-157
Q8VY21406 Tubby-like F-box protein yes no 0.992 0.943 0.689 1e-156
Q8H485406 Tubby-like F-box protein yes no 0.906 0.862 0.692 1e-147
Q9SQU1380 Tubby-like F-box protein no no 0.958 0.973 0.633 1e-131
Q6NPQ1389 Tubby-like F-box protein no no 0.966 0.958 0.611 1e-128
Q75HX5445 Tubby-like F-box protein no no 0.958 0.831 0.546 1e-122
Q6Z2G9428 Tubby-like F-box protein no no 0.901 0.813 0.595 1e-121
Q2QXB2445 Tubby-like F-box protein no no 1.0 0.867 0.510 1e-121
Q8LJA9448 Tubby-like F-box protein no no 0.994 0.857 0.508 1e-117
Q7XSV4462 Tubby-like F-box protein no no 0.968 0.809 0.508 1e-117
>sp|Q10LG8|TLP6_ORYSJ Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica GN=TULP6 PE=2 SV=1 Back     alignment and function desciption
 Score =  553 bits (1426), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 273/404 (67%), Positives = 314/404 (77%), Gaps = 19/404 (4%)

Query: 1   MTIKSIIHDM-----------MWRRSHRVVGDA----ADHDMAGGSSPTCCWANLPQELL 45
           M+ +S+I +M           +  RSHR  G A    A       +    CWA LP ELL
Sbjct: 1   MSFRSLIQEMRDEFGSISRHSLRSRSHRGGGGAPRVAAVGPAEAAAMQQSCWAQLPPELL 60

Query: 46  REILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRD 105
           RE+L +IE ++  WPSRR VVACAGVCRSWR ITKEIV+VPE SG LTFPIS+KQPGPRD
Sbjct: 61  REVLVRIEESEVWWPSRRDVVACAGVCRSWRGITKEIVRVPEASGKLTFPISLKQPGPRD 120

Query: 106 YLLQCFIKRNRSTQTYHLYLSLTN---DDGKFLLAARKCRRATCTDYIISLHSDDMSKGS 162
             L+CFI+RNR+TQTY+LY+ LT    DDGKFLLAARKCR+ TCTDY+ISL   DMSKGS
Sbjct: 121 GTLKCFIRRNRTTQTYYLYIGLTEALADDGKFLLAARKCRKPTCTDYLISLDMSDMSKGS 180

Query: 163 STYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISY 222
           +TY+GKLRSNFLGTKF VYD  PP+ GA +++SRS R+  L QVSPR+P GNY V+HISY
Sbjct: 181 NTYIGKLRSNFLGTKFTVYDAHPPYDGAVVSKSRSARVVGLNQVSPRVPAGNYPVSHISY 240

Query: 223 ELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEK 282
           ELNVLG+RGPRRM C+MDSIP SA++ GG APTQTEF  S  DSFPSI FFRSKS R + 
Sbjct: 241 ELNVLGARGPRRMNCIMDSIPTSAVQEGGKAPTQTEFPLSGLDSFPSISFFRSKSARIDS 300

Query: 283 FLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLE 342
             S  L+ QK+  LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLVAS ENGP   E
Sbjct: 301 ATS-QLSTQKEEKLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVASDENGPTNQE 359

Query: 343 HEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386
            +K+ILQFGK+GKDLFTMDYRYPISAFQ+FAICLSSFDTKIACE
Sbjct: 360 QDKVILQFGKIGKDLFTMDYRYPISAFQSFAICLSSFDTKIACE 403

Oryza sativa subsp. japonica (taxid: 39947)
>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q8H485|TLP11_ORYSJ Tubby-like F-box protein 11 OS=Oryza sativa subsp. japonica GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q9SQU1|TLP9_ARATH Tubby-like F-box protein 9 OS=Arabidopsis thaliana GN=TULP9 PE=1 SV=1 Back     alignment and function description
>sp|Q6NPQ1|TLP11_ARATH Tubby-like F-box protein 11 OS=Arabidopsis thaliana GN=TULP11 PE=2 SV=1 Back     alignment and function description
>sp|Q75HX5|TLP8_ORYSJ Tubby-like F-box protein 8 OS=Oryza sativa subsp. japonica GN=TULP8 PE=2 SV=1 Back     alignment and function description
>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1 Back     alignment and function description
>sp|Q2QXB2|TLP14_ORYSJ Tubby-like F-box protein 14 OS=Oryza sativa subsp. japonica GN=TULP14 PE=2 SV=1 Back     alignment and function description
>sp|Q8LJA9|TLP3_ORYSJ Tubby-like F-box protein 3 OS=Oryza sativa subsp. japonica GN=TULP3 PE=2 SV=1 Back     alignment and function description
>sp|Q7XSV4|TLP7_ORYSJ Tubby-like F-box protein 7 OS=Oryza sativa subsp. japonica GN=TULP7 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
255551637390 phosphoric diester hydrolase, putative [ 0.989 0.979 0.789 1e-179
302399101392 TLP domain class transcription factor [M 1.0 0.984 0.767 1e-177
356555565385 PREDICTED: tubby-like F-box protein 6-li 0.974 0.976 0.783 1e-177
118486104392 unknown [Populus trichocarpa] 0.987 0.971 0.778 1e-176
224107205395 f-box family protein [Populus trichocarp 0.987 0.964 0.774 1e-175
356549056389 PREDICTED: tubby-like F-box protein 6-li 0.974 0.966 0.770 1e-174
357447461393 Tubby-like F-box protein [Medicago trunc 0.994 0.977 0.764 1e-173
225436797405 PREDICTED: tubby-like F-box protein 3-li 0.992 0.945 0.727 1e-172
449518857386 PREDICTED: LOW QUALITY PROTEIN: tubby-li 0.979 0.979 0.746 1e-171
225432392374 PREDICTED: tubby-like F-box protein 6-li 0.909 0.938 0.807 1e-171
>gi|255551637|ref|XP_002516864.1| phosphoric diester hydrolase, putative [Ricinus communis] gi|223543952|gb|EEF45478.1| phosphoric diester hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  635 bits (1638), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 307/389 (78%), Positives = 337/389 (86%), Gaps = 7/389 (1%)

Query: 5   SIIHDMMWR-RSHRVVGDAADHDMAGGS---SPTCCWANLPQELLREILAKIEAADSAWP 60
           S I  M+ R RSHRVV D      A  S       CWAN+PQELLRE+L +IEA++S+WP
Sbjct: 2   SSIRSMIIRSRSHRVVQDGLAPPHAVESRLGEDISCWANMPQELLREVLMRIEASESSWP 61

Query: 61  SRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQT 120
            R+SVVACAGVCR+WR +TKE+VKVPE+SG LTFPISVKQPGPRD+LLQCFIKR RSTQT
Sbjct: 62  PRKSVVACAGVCRTWRHMTKELVKVPEISGKLTFPISVKQPGPRDFLLQCFIKRCRSTQT 121

Query: 121 YHLYLSLTN---DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTK 177
           Y+LYLSLTN   DDGK LLAARKCRR TCTDYIISL +DDMSKGSSTY+GKLRSNFLGTK
Sbjct: 122 YYLYLSLTNALTDDGKLLLAARKCRRTTCTDYIISLDADDMSKGSSTYVGKLRSNFLGTK 181

Query: 178 FIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQC 237
           F V+DGQPPHAGAKM +SRSTRL NLKQVSPR+P GNY +AH+SYELNVLGSRGPRRMQC
Sbjct: 182 FTVFDGQPPHAGAKMMKSRSTRLVNLKQVSPRVPAGNYPIAHMSYELNVLGSRGPRRMQC 241

Query: 238 VMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALV 297
           VMD+IPA++I  GG APTQTEF   + D  PS+PFFRSKSN  E FLSGPL+ QKDGAL+
Sbjct: 242 VMDAIPATSIGPGGTAPTQTEFAHHSVDILPSLPFFRSKSNCVENFLSGPLSSQKDGALI 301

Query: 298 LRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDL 357
           L+NK+PRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGP G EHEKIILQFGKVGKDL
Sbjct: 302 LKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPPGPEHEKIILQFGKVGKDL 361

Query: 358 FTMDYRYPISAFQAFAICLSSFDTKIACE 386
           FTMDYRYPISAFQAFAICLSSFDTKIACE
Sbjct: 362 FTMDYRYPISAFQAFAICLSSFDTKIACE 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302399101|gb|ADL36845.1| TLP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|356555565|ref|XP_003546101.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|118486104|gb|ABK94895.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224107205|ref|XP_002314408.1| f-box family protein [Populus trichocarpa] gi|222863448|gb|EEF00579.1| f-box family protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356549056|ref|XP_003542914.1| PREDICTED: tubby-like F-box protein 6-like [Glycine max] Back     alignment and taxonomy information
>gi|357447461|ref|XP_003594006.1| Tubby-like F-box protein [Medicago truncatula] gi|355483054|gb|AES64257.1| Tubby-like F-box protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|225436797|ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449518857|ref|XP_004166452.1| PREDICTED: LOW QUALITY PROTEIN: tubby-like F-box protein 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225432392|ref|XP_002276906.1| PREDICTED: tubby-like F-box protein 6-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
TAIR|locus:2081101380 TLP9 "AT3G06380" [Arabidopsis 0.958 0.973 0.636 4e-122
TAIR|locus:2180034389 TLP11 "AT5G18680" [Arabidopsis 0.968 0.961 0.615 6.9e-118
TAIR|locus:2025327455 TLP1 "AT1G76900" [Arabidopsis 0.603 0.512 0.555 8.2e-110
TAIR|locus:2032950445 TLP10 "AT1G25280" [Arabidopsis 0.652 0.566 0.532 5e-108
TAIR|locus:2194686429 TLP5 "AT1G43640" [Arabidopsis 0.764 0.687 0.549 5.7e-107
TAIR|locus:2062121394 TLP2 "AT2G18280" [Arabidopsis 0.940 0.921 0.540 1.6e-102
TAIR|locus:2036730413 TLP6 "AT1G47270" [Arabidopsis 0.865 0.808 0.556 5.6e-100
TAIR|locus:2009610379 TLP7 "AT1G53320" [Arabidopsis 0.588 0.598 0.493 7.8e-95
MGI|MGI:2651573505 Tub "tubby candidate gene" [Mu 0.225 0.172 0.542 7.1e-40
RGD|3918505 Tub "tubby homolog (mouse)" [R 0.225 0.172 0.542 7.1e-40
TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
 Identities = 252/396 (63%), Positives = 294/396 (74%)

Query:     1 MTIKSIIHDMMWRRSHRVVGDAADHDMAGGSSPTCCWANLPQELLREILAKIEAADSA-W 59
             MT +S++ +M   R HRVV  AA    A  S P   W+ LP+ELLREIL ++E  D   W
Sbjct:     1 MTFRSLLQEMR-SRPHRVVHAAAS--TANSSDPFS-WSELPEELLREILIRVETVDGGDW 56

Query:    60 PSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQ 119
             PSRR+VVACAGVCRSWR +TKEIV VPE S  LTFPIS+KQ GPRD L+QCFIKRNR+TQ
Sbjct:    57 PSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISLKQSGPRDSLVQCFIKRNRNTQ 116

Query:   120 TYHLYLSLTN---DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGT 176
             +YHLYL LT    D+GKFLLAA K +RATCTDYIISL SDD+SK S+ YLG++RSNFLGT
Sbjct:   117 SYHLYLGLTTSLTDNGKFLLAASKLKRATCTDYIISLRSDDISKRSNAYLGRMRSNFLGT 176

Query:   177 KFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQ 236
             KF V+DG    A AKM +SRS+   N  +VSPR+P G+Y +AHISYELNVLGSRGPRRM+
Sbjct:   177 KFTVFDGSQTGA-AKMQKSRSS---NFIKVSPRVPQGSYPIAHISYELNVLGSRGPRRMR 232

Query:   237 CVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDG-- 294
             C+MD+IP S +ES GV  + +   FS+  S    P FRS    S+   S   +C   G  
Sbjct:   233 CIMDTIPMSIVESRGVVASTSISSFSSRSS----PVFRS---HSKPLRSNSASCSDSGNN 285

Query:   295 ----ALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQF 350
                  LVL NKAPRWHEQL+CWCLNFHGRVTVASVKNFQLVA  +   AG   E+IILQF
Sbjct:   286 LGDPPLVLSNKAPRWHEQLRCWCLNFHGRVTVASVKNFQLVAVSDC-EAGQTSERIILQF 344

Query:   351 GKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386
             GKVGKD+FTMDY YPISAFQAFAICLSSF+T+IACE
Sbjct:   345 GKVGKDMFTMDYGYPISAFQAFAICLSSFETRIACE 380
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009620 "response to fungus" evidence=IMP
TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2651573 Tub "tubby candidate gene" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3918 Tub "tubby homolog (mouse)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8H485TLP11_ORYSJNo assigned EC number0.69200.90670.8620yesno
Q8VY21TLP3_ARATHNo assigned EC number0.68940.99220.9433yesno
Q10LG8TLP6_ORYSJNo assigned EC number0.67570.99740.9553yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
pfam01167243 pfam01167, Tub, Tub family 1e-121
pfam1293747 pfam12937, F-box-like, F-box-like 3e-04
pfam0064648 pfam00646, F-box, F-box domain 0.001
smart0025641 smart00256, FBOX, A Receptor for Ubiquitination Ta 0.004
>gnl|CDD|216339 pfam01167, Tub, Tub family Back     alignment and domain information 
 Score =  350 bits (899), Expect = e-121
 Identities = 128/286 (44%), Positives = 165/286 (57%), Gaps = 49/286 (17%)

Query: 101 PGPRDYLLQCFIKRNRSTQTYHLY----LSLTNDDG--KFLLAARKCRRATCTDYIISLH 154
           P PR   +QC I R++S   Y L+    L L  ++G  KFLLAARK +R+  ++Y+ISL 
Sbjct: 1   PAPRGGTVQCRITRDKSGMDYGLFPTYYLHLERENGKKKFLLAARKRKRSKTSNYLISLD 60

Query: 155 SDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGN 214
             D+S+    Y+GKLRSNFLGTKF V+D       A++             V+P++  G 
Sbjct: 61  PTDLSRSGDGYIGKLRSNFLGTKFTVFDNGVNPQKARL-------------VTPKVASGR 107

Query: 215 YSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFFR 274
             +A + YE NVLG RGPR+M  +M  IP+S        P Q                  
Sbjct: 108 QELAAVCYETNVLGFRGPRKMTVIMPGIPSSHE----RVPIQPL---------------- 147

Query: 275 SKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASP 334
              N  E  LS      K+  LVL NKAPRW++QLQ + LNFHGRVT ASVKNFQ+V + 
Sbjct: 148 ---NDQESLLSRWQNKNKESLLVLHNKAPRWNDQLQSYVLNFHGRVTQASVKNFQIVHAS 204

Query: 335 ENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFD 380
                  + + I+LQFG+V KD+FTMDYRYP+SAFQAFAICLSSFD
Sbjct: 205 -------DPDYIVLQFGRVAKDMFTMDYRYPLSAFQAFAICLSSFD 243

Length = 243
>gnl|CDD|221867 pfam12937, F-box-like, F-box-like Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
KOG2502355 consensus Tub family proteins [General function pr 100.0
PF01167246 Tub: Tub family; InterPro: IPR000007 Tubby, an aut 100.0
KOG2503565 consensus Tubby superfamily protein TULP4 [General 99.77
PF12043346 DUF3527: Domain of unknown function (DUF3527); Int 98.33
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.8
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.54
PLN03215373 ascorbic acid mannose pathway regulator 1; Provisi 97.36
smart0025641 FBOX A Receptor for Ubiquitination Targets. 97.23
KOG2997366 consensus F-box protein FBX9 [General function pre 89.42
>KOG2502 consensus Tub family proteins [General function prediction only] Back     alignment and domain information 
Probab=100.00  E-value=3.4e-127  Score=939.34  Aligned_cols=308  Identities=60%  Similarity=0.990  Sum_probs=285.4

Q ss_pred             CCCCCCCHHHHHHHHHHhhhcCCCCCCccceeeecccchhHHHHhHhhhcCcccccccccccccccCCCCCceEEEEEEE
Q 016615           35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKR  114 (386)
Q Consensus        35 ~~w~~~~~ell~~~~~r~e~~~~~wp~r~~vv~ca~vc~~wr~~~~~~v~~p~~~gk~tFp~sLkqPgPr~~~iQC~I~R  114 (386)
                      +.|++||||||+|+|+|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++|+||||+|.++||+|+|
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R  122 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR  122 (355)
T ss_pred             chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeCceEEEEEeccC-----CCCcEEEEEeecccCCcceEEEEecCCCCCCCCCceeeeeeecceecEEEEecCCCCCCC
Q 016615          115 NRSTQTYHLYLSLTN-----DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAG  189 (386)
Q Consensus       115 ~k~~~tY~LYL~l~~-----e~~kfLLaArK~rr~~tSnYiISld~~dlSr~s~~yvGKLRSNflGTkF~IYD~g~p~~~  189 (386)
                      ||+|++|+||+++..     |++||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|..   
T Consensus       123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~---  199 (355)
T KOG2502|consen  123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVN---  199 (355)
T ss_pred             ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCC---
Confidence            999999999999865     668999999999999999999999999999999999999999999999999999732   


Q ss_pred             CccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEeeccCCcccccCCCCCCccceecccCCCCCCC
Q 016615          190 AKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPS  269 (386)
Q Consensus       190 a~~~~~r~~~~~~~k~vsp~~p~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~gG~~P~q~~~~~~~~~~~~~  269 (386)
                             .+|.++      ++|++++|||+|+||+||||+||||||+|+||.||.++  ++|++|.|++..+.       
T Consensus       200 -------~~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~--~~~~v~~q~~~~~~-------  257 (355)
T KOG2502|consen  200 -------PSRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSA--PGGRVPVQPENDHP-------  257 (355)
T ss_pred             -------cccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCC--CCCccccccccccc-------
Confidence                   123333      68899999999999999999999999999999999887  89999988765431       


Q ss_pred             ccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEEecCCCCCCCCCCCeEEEE
Q 016615          270 IPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPENGPAGLEHEKIILQ  349 (386)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv~~~~~~~~~~~~~~iiLQ  349 (386)
                                  +.+.+.++..++++++|+||+|+|||++||||||||||||+||||||||||..       ++++||||
T Consensus       258 ------------~~l~r~~~k~~e~~lvL~NK~P~wne~~q~~~LNF~GRVT~ASVKNFQLv~~~-------~p~~iiLQ  318 (355)
T KOG2502|consen  258 ------------SLLFRSQNKDKEGLLVLKNKTPRWNEETQSYCLNFHGRVTQASVKNFQLVHAL-------DPEYIILQ  318 (355)
T ss_pred             ------------chhhhccccCcccceEeecCCCccccccceEEEecCCeEEEeeecceEEeccC-------CCCEEEEE
Confidence                        11233334457899999999999999999999999999999999999999974       67999999


Q ss_pred             eeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016615          350 FGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  386 (386)
Q Consensus       350 FGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACe  386 (386)
                      |||||+|+|||||+|||||||||||||||||+|||||
T Consensus       319 FGrV~kD~FTmDYrYPlSa~QAFaIcLSSFdtKlaCe  355 (355)
T KOG2502|consen  319 FGRVGKDVFTMDYRYPLSAFQAFAICLSSFDTKLACE  355 (355)
T ss_pred             eeeeccceeeecccCccHHHHHHHHHHHhccccccCC
Confidence            9999999999999999999999999999999999998

>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function Back     alignment and domain information
>KOG2503 consensus Tubby superfamily protein TULP4 [General function prediction only] Back     alignment and domain information
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1s31_A273 Crystal Structure Analysis Of The Human Tub Protein 4e-46
1c8z_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Leng 2e-45
1i7e_A265 C-Terminal Domain Of Mouse Brain Tubby Protein Boun 4e-45
2fim_A276 Structure Of The C-Terminal Domain Of Human Tubby-L 6e-44
3c5n_A246 Structure Of Human Tulp1 In Complex With Ip3 Length 4e-41
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein (isoform A) Spanning Residues 289 Through 561 Length = 273 Back     alignment and structure 
Iteration: 1

 Score =  181 bits (460), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 109/296 (36%), Positives = 159/296 (53%), Gaps = 55/296 (18%)
Query: 100 QPGPRDYLLQCFIKRNRSTQTYHLY----LSLTNDDGK--FLLAARKCRRATCTDYIISL 153
           +P P+   ++C I R++      ++    L L  +DGK  FLLA RK +++  ++Y+IS+
Sbjct: 24  RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISV 83
Query: 154 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 212
              D+S+G  +Y+GKLRSN +GTKF VYD G  P   +  T    T    L+Q       
Sbjct: 84  DPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ------- 132
Query: 213 GNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAI--ESGGVAPTQTEFLFSNADSFPSI 270
               +A + YE NVLG +GPR+M  +   +P   +  E   + P                
Sbjct: 133 ---ELAAVCYETNVLGFKGPRKMSVI---VPGMNMVHERVSIRP---------------- 170
Query: 271 PFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQL 330
                  N  E  L+       +  + L+NK P W++  Q + LNFHGRVT ASVKNFQ+
Sbjct: 171 ------RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQI 224
Query: 331 VASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386
           +        G + + I++QFG+V +D+FTMDY YP+ A QAFAI LSSFD+K+ACE
Sbjct: 225 IH-------GNDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE 273
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Length = 265 Back     alignment and structure
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To Phosphatidylinositol 4,5-Bis-Phosphate Length = 265 Back     alignment and structure
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like Protein 1 Length = 276 Back     alignment and structure
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3 Length = 246 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 4e-94
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 1e-91
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 1e-04
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 5e-04
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276 Back     alignment and structure
 Score =  282 bits (721), Expect = 4e-94
 Identities = 99/293 (33%), Positives = 144/293 (49%), Gaps = 49/293 (16%)

Query: 98  VKQPGPRDYLLQCFIKRNRSTQTYHLYLSLT----NDDGKFLLAARKCRRATCTDYIISL 153
           V +P P+   ++C + R++      +Y S       +   FLLA RK +R+   +Y+IS+
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88

Query: 154 HSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFG 213
              ++S+G   ++GKLRSN LG +F V+D                     +  S  +   
Sbjct: 89  DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ---------------RGYSTNVASL 133

Query: 214 NYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQTEFLFSNADSFPSIPFF 273
              +A + YE NVLG RGPRRM  ++  + A                    +  P  P  
Sbjct: 134 RQELAAVIYETNVLGFRGPRRMTVIIPGMSA------------------ENERVPIRP-- 173

Query: 274 RSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLVAS 333
               N S+  L        +  + L NK P W++    + LNF GRVT ASVKNFQ+V +
Sbjct: 174 ---RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHA 230

Query: 334 PENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 386
            +        + I+LQFG+V +D FT+DYRYP+ A QAFAI LSSFD K+ACE
Sbjct: 231 DD-------PDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE 276
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
2fim_A276 Tubby related protein 1; tubby filled-barrel, beta 100.0
3c5n_A246 Tubby-related protein 1; inositol, signalling, alt 100.0
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 98.12
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 96.93
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 96.81
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 96.62
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 94.8
3v7d_B 464 Cell division control protein 4; WD 40 domain, pho 94.39
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 92.54
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 92.15
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 91.31
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-91  Score=673.12  Aligned_cols=242  Identities=40%  Similarity=0.718  Sum_probs=186.3

Q ss_pred             cccCCCCCceEEEEEEEeeeC------ceEEEEEeccCCCCcEEEEEeecccCCcceEEEEecCCCCCCCCCceeeeeee
Q 016615           98 VKQPGPRDYLLQCFIKRNRST------QTYHLYLSLTNDDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRS  171 (386)
Q Consensus        98 LkqPgPr~~~iQC~I~R~k~~------~tY~LYL~l~~e~~kfLLaArK~rr~~tSnYiISld~~dlSr~s~~yvGKLRS  171 (386)
                      |+||+|+|++|||+|+|||+|      ++|||||+  .++++|||||||+|+++|+||+||+|++||||++++|||||||
T Consensus        29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~--~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGKLrS  106 (276)
T 2fim_A           29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD--TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGKLRS  106 (276)
T ss_dssp             GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC--SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEEEEE
T ss_pred             hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe--CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEEEEE
Confidence            999999999999999999998      59999995  3678999999999999999999999999999999999999999


Q ss_pred             cceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEeeccCCcccccCCC
Q 016615          172 NFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGG  251 (386)
Q Consensus       172 NflGTkF~IYD~g~p~~~a~~~~~r~~~~~~~k~vsp~~p~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~gG  251 (386)
                      ||+||+|+|||+|.+++.               ..+|+++.+|+|||+|+||+|+||++|||+|+|+||.+.    +.|+
T Consensus       107 NflGtkF~iyD~G~~p~~---------------~~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~----~~~~  167 (276)
T 2fim_A          107 NLLGNRFTVFDNGQNPQR---------------GYSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS----AENE  167 (276)
T ss_dssp             CSSSSEEEEECSSBCGGG---------------CTTSCGGGBCCEEEEEEEC---------CCEEEEEECBC----TTSC
T ss_pred             ccCCCEEEEECCCCCccc---------------ccCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc----cCCC
Confidence            999999999999954321               135667788999999999999999999999999998542    2233


Q ss_pred             CCCccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEE
Q 016615          252 VAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLV  331 (386)
Q Consensus       252 ~~P~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv  331 (386)
                      ..|.+.                   .+..++++.++++...+++++|+||+|+|||++|||||||+||||+|||||||||
T Consensus       168 ~~~~~p-------------------~~~~~~ll~~~~~~~~~~~~~l~nK~P~wne~~~~y~LnF~GRVt~aSvKNFQLv  228 (276)
T 2fim_A          168 RVPIRP-------------------RNASDGLLVRWQNKTLESLIELHNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIV  228 (276)
T ss_dssp             BCCCCC-------------------SSTTCSHHHHHHHTCCTTEEEEEECCCEEETTTTEEECCCTTCCCSCCTTCEEEE
T ss_pred             EecccC-------------------CCcccccchhhhccCCcceEeeeccCCcccccCCEEEEecCCeeeccccceEEEE
Confidence            332211                   0111222223334456889999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016615          332 ASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  386 (386)
Q Consensus       332 ~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACe  386 (386)
                      +++       ++++||||||||++|+|||||+|||||||||||||||||+|||||
T Consensus       229 ~~~-------d~~~ivlQFGKv~~d~FtmD~~yPlS~~QAFaI~LsSfd~Klace  276 (276)
T 2fim_A          229 HAD-------DPDYIVLQFGRVAEDAFTLDYRYPLCALQAFAIALSSFDGKLACE  276 (276)
T ss_dssp             CTT-------CTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHTCC------
T ss_pred             ecC-------CCCEEEEEEeecCCCeEEEEecCCCCHHHHHHHHHHhcccccccC
Confidence            873       678999999999999999999999999999999999999999998
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 386
d1c8za_265 d.23.1.1 (A:) Transcriptional factor tubby, C-term 1e-106
d1fs1a141 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [ 1e-04
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  312 bits (801), Expect = e-106
 Identities = 101/310 (32%), Positives = 155/310 (50%), Gaps = 55/310 (17%)

Query: 83  VKVPELSGYLTFPISVKQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNDDGKFLL 136
           ++V +L  +        +P P+   ++C I R++         TY L+L   +    FLL
Sbjct: 5   IEVQDLEEFAL------RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLL 58

Query: 137 AARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSR 196
           A RK +++  ++Y+IS+   D+S+G  +Y+GKLRSN +GTKF VYD       A      
Sbjct: 59  AGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKA------ 112

Query: 197 STRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGGVAPTQ 256
                     +         +A + YE NVLG +GPR+M  ++  +             +
Sbjct: 113 -------SSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPRNE 165

Query: 257 TEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNF 316
            E L +           R ++               +  + L+NK P W++  Q + LNF
Sbjct: 166 HETLLA-----------RWQNK------------NTESIIELQNKTPVWNDDTQSYVLNF 202

Query: 317 HGRVTVASVKNFQLVASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICL 376
           HGRVT ASVKNFQ++          + + I++QFG+V +D+FTMDY YP+ A QAFAI L
Sbjct: 203 HGRVTQASVKNFQIIHGN-------DPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIAL 255

Query: 377 SSFDTKIACE 386
           SSFD+K+ACE
Sbjct: 256 SSFDSKLACE 265
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d1c8za_265 Transcriptional factor tubby, C-terminal domain {M 100.0
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 98.03
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 96.81
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.7
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 94.67
>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.8e-87  Score=637.67  Aligned_cols=246  Identities=41%  Similarity=0.709  Sum_probs=208.9

Q ss_pred             cccCCCCCceEEEEEEEeeeCc------eEEEEEeccCCCCcEEEEEeecccCCcceEEEEecCCCCCCCCCceeeeeee
Q 016615           98 VKQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNDDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRS  171 (386)
Q Consensus        98 LkqPgPr~~~iQC~I~R~k~~~------tY~LYL~l~~e~~kfLLaArK~rr~~tSnYiISld~~dlSr~s~~yvGKLRS  171 (386)
                      |.||||+|++|||+|+|||+|+      +|+|||+.++++++|||||||+|+++++|||||+|++|+||++++|||||||
T Consensus        14 l~qP~Pr~~~iqC~IkR~k~~~~~~l~~~Y~l~l~~~~gk~kfLLaArK~r~~~~~~yiIS~~~~d~sr~s~~yvGKlrS   93 (265)
T d1c8za_          14 ALRPAPQGITIKCRITRDKKGMDRGMFPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRS   93 (265)
T ss_dssp             HHCCCCTTCCEEEEEEECSSCSSSSCCCEEEEEEECTTSCEEEEEEEEEEESSSSEEEEEESCHHHHTTTCCCCSEEEEE
T ss_pred             hcCCCCCCCcEEEEEEEccCCCcCccceeEEEEEccCCCceeEEEEEeeecCCCcceEEEEccHHHhcccccceeEEeec
Confidence            9999999999999999999875      6999998766667899999999999999999999999999999999999999


Q ss_pred             cceecEEEEecCCCCCCCCccccccccccccccccCCCCCCCceeEEEEEEecccCCCCCCceeEEeeccCCcccccCCC
Q 016615          172 NFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRGPRRMQCVMDSIPASAIESGG  251 (386)
Q Consensus       172 NflGTkF~IYD~g~p~~~a~~~~~r~~~~~~~k~vsp~~p~~~~ela~V~Ye~NvLg~rGPRrM~~~m~~Ip~s~i~~gG  251 (386)
                      ||+||+|+|||+|.+++.++..             +....+.|+|||+|+||+|+||+||||+|+|+||.++.+...   
T Consensus        94 NflGTkF~iYD~G~~p~~~~~~-------------~~~~~~~r~ela~V~Ye~n~l~~rGPR~m~~~ip~~~~~~~~---  157 (265)
T d1c8za_          94 NLMGTKFTVYDNGVNPQKASSS-------------TLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHER---  157 (265)
T ss_dssp             CTTSSEEEEECSSBCGGGCCTT-------------GGGSSSBCCEEEEEEECCCCSSCCSCCCEEEEEECBCTTSCB---
T ss_pred             cccCCEEEEecCCCCccccccc-------------ccccCccceeeeEEEEeeehhccCCCceeEEEecCCCccccc---
Confidence            9999999999999665433211             112234578999999999999999999999999977532110   


Q ss_pred             CCCccceecccCCCCCCCccccccccccccccccCCcccCCCceeEeecCCCccccccccEEeecCCceeccccceeEEE
Q 016615          252 VAPTQTEFLFSNADSFPSIPFFRSKSNRSEKFLSGPLACQKDGALVLRNKAPRWHEQLQCWCLNFHGRVTVASVKNFQLV  331 (386)
Q Consensus       252 ~~P~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~nK~P~w~e~lq~y~LnF~GRVt~aSVKNFQLv  331 (386)
                       .    .+.          |     .+..++.+....+...+++++|+||+|+||++++||+|||+||||+|||||||||
T Consensus       158 -~----~~~----------p-----~~~~~~~~~~~~~~~~~~~~~l~~k~P~~n~~~~~~~LnF~gRv~~~SvKNFql~  217 (265)
T d1c8za_         158 -V----CIR----------P-----RNEHETLLARWQNKNTESIIELQNKTPVWNDDTQSYVLNFHGRVTQASVKNFQII  217 (265)
T ss_dssp             -C----CCC----------C-----SSTTSSHHHHHHTTCCSSEEEEEECCCEEETTTTEEEEEETTEEEECBTTEEEEE
T ss_pred             -c----ccC----------C-----CCcchhhhHHhhccCcccceEEecCCCeeeccCCEEEeccCCEEeccccceEEEE
Confidence             0    010          1     1112222333344567899999999999999999999999999999999999999


Q ss_pred             ecCCCCCCCCCCCeEEEEeeecCCCeeEEEccCCCCHHHHHHHHHHcCccccccC
Q 016615          332 ASPENGPAGLEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE  386 (386)
Q Consensus       332 ~~~~~~~~~~~~~~iiLQFGKv~~d~F~mD~~yPlS~~QAFaI~LssFDtKlACe  386 (386)
                      ++       ++++++|||||||++|+|+|||+|||||+|||||||||||+|||||
T Consensus       218 ~~-------~~~~~~~lqfgKv~~~~f~~d~~~Pls~~qaF~i~lssf~~Klace  265 (265)
T d1c8za_         218 HG-------NDPDYIVMQFGRVAEDVFTMDYNYPLCALQAFAIALSSFDSKLACE  265 (265)
T ss_dssp             CT-------TCTTSCSEEEEEEETTEEEEEECTTCCHHHHHHHHHHHHHSSCCCC
T ss_pred             eC-------CCCCEEEEEEEEccCCeEEEEecCCCCHHHHHHHHHHHhccccccC
Confidence            86       3678999999999999999999999999999999999999999998
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure