Citrus Sinensis ID: 016620

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
Protein Sequence
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHcccccEEEEcccccccHHHHHHcccccccEEEEcccccccccHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHccccccccccccccccccHHHHHHHccEEEEEccccHHHHccccHHHHHccccccEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccEEEEEccccHHHHHHHHHHcccEEEEEEcccccccHHHHHHHHcccccEEEEEccccccHHHHHHHHcccccEEEEEccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccEccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHEEEEcccccccHHHHHccEEcccHHHHHccccEEEEcccccccccccEcHHHHccccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccHHHcccccEEEcccccccEHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpgtrWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAvgynnvdvnaankygiavgntpgvlTETTAELAASLSLAAARRIVEADEFMraglydgwlpnlfvgnllkgqtvgvigagrIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLkangeqpvtwkrASSMDEVLREADvislhpvldkttYHLINKERLATMKKEAILVncsrgpviDEVALVEHlkqnpmfrvgldvfedepymkpglsemknAIVVPHIASASKWTREGMATLAALNVLGkikgypiwgnpnqvepflnenaqppaaspsivnskalglpvsrl
Flexible Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFlkangeqpvtwKRASSMDEVLREAdvislhpvldkttYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAqppaaspsivnskalglpvsrl
Low Complexity Region (SEG)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVltettaelaaslslaaaRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Disordered region (IsUnstruct)
******IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV******************************
Disordered Region (DISOPRED)
*****************VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Disordered Region (DISEMBL)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Disordered Region (DISPRO)
**KPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	386	2.2.26 [Sep-21-2011]
Q9C9W5	386	Glycerate dehydrogenase H	yes	no	1.0	1.0	0.909	0.0
P13443	382	Glycerate dehydrogenase O	N/A	no	0.984	0.994	0.910	0.0
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.790	0.913	0.388	7e-51
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.795	0.905	0.383	6e-50
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.691	0.806	0.419	5e-49
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.709	0.815	0.385	3e-48
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.699	0.813	0.412	7e-48
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.624	0.719	0.418	2e-47
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.748	0.867	0.388	1e-46
C5A1V0	334	Glyoxylate reductase OS=T	yes	no	0.790	0.913	0.385	4e-43

>sp|Q9C9W5|HPR1_ARATH Glycerate dehydrogenase HPR, peroxisomal OS=Arabidopsis thaliana GN=HPR PE=1 SV=1

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/386 (90%), Positives = 374/386 (96%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++Q CRVEIC  KKTILSVEDII LIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQGCRVEICHLKKTILSVEDIIDLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMR GLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRGGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAMMKKEAILVNCSRGPVIDEAALVEHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           +EP+MKPGL++ KNAIVVPHIASASKWTREGMATLAALNVLG++KGYPIW +PN+V+PFL
Sbjct: 301 EEPFMKPGLADTKNAIVVPHIASASKWTREGMATLAALNVLGRVKGYPIWHDPNRVDPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVSRL 386
           NENA PP ASPSIVNSKALGLPVS+L
Sbjct: 361 NENASPPNASPSIVNSKALGLPVSKL 386

Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1

 Score =  709 bits (1830), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/380 (91%), Positives = 368/380 (96%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNAI+VPHIASASKWTREGMATLAALNVLGKIKGYP+W +PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGYPVWSDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALG 380
           +EN  PPAASPSIVN+KALG
Sbjct: 361 DENVSPPAASPSIVNAKALG 380

Cucumis sativus (taxid: 3659)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  201 bits (512), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 129/332 (38%), Positives = 192/332 (57%), Gaps = 27/332 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V+ T+ +P    I +L E    VE+   +  I S E ++  + D  D ++  L+E  
Sbjct: 2   KPKVLITRKIP-ENGIKMLREH-FEVEVWEDEHEI-SREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   K  +N AVGY+N+D+  A K G+ + NTP VLT  TA++A  L LA 
Sbjct: 58  DAEVFDAAPRL--KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD+F+R+G +      W P +F+G  + G+T+G++G GRIG A AR   +GF M
Sbjct: 116 ARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++Y    +   +EK + A  +F+               +DE+L+E+D + L   L K T
Sbjct: 175 RILYNSRTRKPEVEKELGA--EFM--------------PLDELLKESDFVVLVVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ L++  +   GLDVFE+EPY    L 
Sbjct: 219 YHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFEEEPYYHEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLG 342
            + N ++ PHI SA+   REGMA L A N++ 
Sbjct: 279 SLDNVVLAPHIGSATYGAREGMAELVARNLIA 310

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  198 bits (503), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 190/336 (56%), Gaps = 29/336 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K  V    P PG      ++++ C V +   K    S E+++  I DK D ++  LT+  
Sbjct: 5   KVYVTRIIPEPGLS----MLKECCDVVVHESKDWPPSREELLRNIRDK-DALLCLLTDKI 59

Query: 75  -GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
             E + AA      K  S  +VG++++D+  A K GI V +TPGVLT+  AE    L LA
Sbjct: 60  DAEVMDAA---PNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILA 116

Query: 134 AARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
             RRIVEAD+ +R G +D  W P    G  LKG+T+G++G GRIG A A+ +   F + +
Sbjct: 117 VTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRL-SSFDVKI 175

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD+ +   +E  +         N E        + +D +L ++D++S+H  L K TYH
Sbjct: 176 LYYDIERRWDVETVI--------PNME-------FTDLDTLLEKSDIVSIHVPLTKETYH 220

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LS 310
           LIN+ERL  MKK A L+N +RGPV+D  ALV+ LK+  +    LDVFE EP + P   L+
Sbjct: 221 LINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFEQEP-LPPNHPLT 279

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           +  N ++ PHIASA+   R+ MA LAA N++  +KG
Sbjct: 280 KFDNVVLAPHIASATIEARQRMAELAARNLIAVLKG 315

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  195 bits (495), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 127/303 (41%), Positives = 178/303 (58%), Gaps = 36/303 (11%)

Query: 49  ILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY 108
           +  V+ ++ L+ DK D    +L E+  +           K  +  AVGY+N+D+  A K 
Sbjct: 43  VREVDALVTLVTDKVDK---ELLENAPKL----------KIIAQYAVGYDNIDIEEATKR 89

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLK 164
           GI V NTPGVLT+ TA+LA +L LA ARRIVEAD F+R+G +     GW P +F+G  LK
Sbjct: 90  GIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLK 149

Query: 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVT 223
           G+T+G++G GRIG A A+   +GF M +IYY   +    E+ + A Y  F          
Sbjct: 150 GKTLGIVGFGRIGQALAKR-AKGFGMKIIYYSRTRKPEAEEEIGAEYVDF---------- 198

Query: 224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV 283
                  + +L+E+D ISLH  L K TYH+I ++ L  MK  AIL+N SRG V+D  AL+
Sbjct: 199 -------ETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALI 251

Query: 284 EHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGK 343
           + LK+  +   GLDVFE+EPY    L ++KN ++ PHI SA+   REGMA L A N++  
Sbjct: 252 KALKEGWIAGAGLDVFEEEPYYNEELFKLKNVVLAPHIGSATHEAREGMAELVAKNLIAF 311

Query: 344 IKG 346
            KG
Sbjct: 312 AKG 314

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  192 bits (489), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 115/298 (38%), Positives = 170/298 (57%), Gaps = 24/298 (8%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E ++  + D  D ++  L+E   + +F    R   +  +N AVGY+N+DV  A + GI V
Sbjct: 37  EKLLEKVKD-VDALVTMLSERIDQEVFENAPRL--RIVANYAVGYDNIDVEEATRRGIYV 93

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTV 168
            NTP VLT  TA+ A +L LA AR +V+ D+F+R+G +      W P  F+G  L G+T+
Sbjct: 94  TNTPDVLTNATADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTI 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A AR   +GF M ++YY   + ++ EK + A                   
Sbjct: 154 GIVGFGRIGQAIARR-AKGFNMRILYYSRTRKSQAEKELGA----------------EYR 196

Query: 229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288
            ++EVL+E+D + L   L K T ++IN+ERL  MK  AILVN +RG V+D  AL++ LK+
Sbjct: 197 PLEEVLKESDFVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKE 256

Query: 289 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             +   GLDVFE+EPY    L  + N ++ PHI SA+   RE MA L A N++   +G
Sbjct: 257 GWIAGAGLDVFEEEPYYNEELFSLDNVVLTPHIGSATFEAREAMAELVARNLIAFKRG 314

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  191 bits (485), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/296 (41%), Positives = 180/296 (60%), Gaps = 26/296 (8%)

Query: 55  IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGN 114
           II  + D CD ++  LT+     +F A  +   +  +  AVGY+N+DV  A K GI V N
Sbjct: 39  IIERVKD-CDALVSLLTDPIDAEVFEAAPKL--RIVAQYAVGYDNIDVKEATKRGIYVTN 95

Query: 115 TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGA 173
           TPGVLTETTA+ A +L +AAARR+VEAD ++R G +   W P + +G  + G+T+G++G 
Sbjct: 96  TPGVLTETTADFAFALLMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGM 155

Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDE 232
           GRIG+A AR   +GF M ++YYD   + R E F    G +++               +++
Sbjct: 156 GRIGAAVARR-AKGFGMRILYYD---SIRREDFEKELGVEYV--------------PLEK 197

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           +L E+D +SLH  L + TYH+I +E+L  MK+ AILVN SRG V+D+ AL + LK+  + 
Sbjct: 198 LLEESDFVSLHVPLTEETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIA 257

Query: 293 RVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             GLDVFE EP + P   L +++N ++ PH ASAS  TR  MA + A N++   +G
Sbjct: 258 GAGLDVFEQEP-IPPDDPLLKLENVVLAPHAASASHETRSRMAEMVAENLIAFKRG 312

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  189 bits (481), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 111/265 (41%), Positives = 160/265 (60%), Gaps = 24/265 (9%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           +  + MAVG++N+DV  A + GI V NTPGVLTE TAE   +L LAAARR+VEAD F+R 
Sbjct: 70  RIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRW 129

Query: 148 G----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G    L  GW P + +G  L+G+T+G++G GRIGS  A +  + F M +IY+   +   +
Sbjct: 130 GEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIG-KAFGMRIIYHSRSRKREI 188

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK + A                   S++++LRE+D++S+H  L   T HLI +  L  MK
Sbjct: 189 EKELGA----------------EYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMK 232

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHI 321
           K AILVN  RG ++D  ALV+ L++  +    LDVFE+EP + P   L+  KN ++ PH 
Sbjct: 233 KTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEP-LNPNHPLTAFKNVVLAPHA 291

Query: 322 ASASKWTREGMATLAALNVLGKIKG 346
           ASA++ TR  MA +AA N++   +G
Sbjct: 292 ASATRETRLRMAMMAAENLVAFAQG 316

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  187 bits (474), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 122/314 (38%), Positives = 183/314 (58%), Gaps = 25/314 (7%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++++   VE+  +++ I   E ++  + D  D ++  L+E     +F A  R   +  +N
Sbjct: 18  MLKEHFEVEVWPEEREI-PREVLLKKVRD-VDALVTMLSERIDSEVFDAAPRL--RIVAN 73

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD- 151
            AVGY+N+DV  A + GI V NTP VLT+ TA+ A +L LA ARR++EAD F R+G +  
Sbjct: 74  YAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKR 133

Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G++G GRIG A AR    GF M ++YY   +    EK + 
Sbjct: 134 RGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVARR-ARGFGMRILYYSRSRKPEAEKELG 192

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F               S++++LRE+D + L   L K T ++IN+ERL  MKK AIL
Sbjct: 193 A--EF--------------RSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAIL 236

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 328
           VN +RG V+D  AL++ LK+  +   GLDV+E+EPY    L  +KN ++ PHI SA+   
Sbjct: 237 VNIARGKVVDTKALMKALKEGWIAGAGLDVYEEEPYYNEELFSLKNVVLAPHIGSATYGA 296

Query: 329 REGMATLAALNVLG 342
           REGMA L A N++ 
Sbjct: 297 REGMAELVARNLIA 310

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|C5A1V0|GYAR_THEGJ Glyoxylate reductase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=gyaR PE=3 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 188/332 (56%), Gaps = 27/332 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I++L E    VE+  +++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITRAIPEN-GIDMLREH-FEVEVWPEEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F    R   +  +N AVGY+NVDV  A + GI V NTP VLT  TA+ A +L LA 
Sbjct: 58  DGEVFDNAPRL--RIVANYAVGYDNVDVEEATRRGIYVTNTPDVLTNATADFAWTLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD F R+G +      W P +F+G+ + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLIEADSFTRSGEWKRKGIAWHPLMFLGHDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    E+ + A  +F                ++E+L+E+D + L   L K T
Sbjct: 175 RILYYSRTRKPEAEEELKA--EF--------------KPLEELLKESDFVVLAVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+I +  L  MK  AILVN +RG V+D  AL++ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHMIGERELKLMKPTAILVNIARGKVVDTEALIKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLG 342
            +KN I+ PHI SA+   REGMA L A N++ 
Sbjct: 279 SLKNVILAPHIGSATFGAREGMAELVARNLIA 310

Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) (taxid: 593117)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
255581842	386	hydroxypyruvate reductase, putative [Ric	1.0	1.0	0.963	0.0
118489484	386	unknown [Populus trichocarpa x Populus d	1.0	1.0	0.943	0.0
13873334	386	hydroxypyruvate reductase [Bruguiera gym	1.0	1.0	0.937	0.0
225428049	386	PREDICTED: glycerate dehydrogenase [Viti	1.0	1.0	0.930	0.0
224078341	386	predicted protein [Populus trichocarpa]	1.0	1.0	0.937	0.0
147805559	386	hypothetical protein VITISV_020147 [Viti	0.981	0.981	0.931	0.0
388493492	388	unknown [Lotus japonicus]	0.994	0.989	0.919	0.0
118723307	386	hydroxypyruvate reductase [Solenostemon	1.0	1.0	0.917	0.0
388506608	386	unknown [Medicago truncatula]	1.0	1.0	0.904	0.0
351723797	386	conversion of hydroxypyruvate to glycera	1.0	1.0	0.898	0.0

>gi|255581842|ref|XP_002531721.1| hydroxypyruvate reductase, putative [Ricinus communis] gi|223528624|gb|EEF30641.1| hydroxypyruvate reductase, putative [Ricinus communis]

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/386 (96%), Positives = 380/386 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQATRLEKFVTAYG FL+ANGEQPVTWKRASSMDEVLR ADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQATRLEKFVTAYGAFLQANGEQPVTWKRASSMDEVLRVADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP+WGNPNQVEPFL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGNPNQVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVSRL 386
           NENA PPAASPSIVN+KALGLPVS+L
Sbjct: 361 NENAPPPAASPSIVNAKALGLPVSKL 386

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489484|gb|ABK96544.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  739 bits (1907), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 364/386 (94%), Positives = 382/386 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVLGKIKGYP+WG+PNQV PFL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNQVAPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVSRL 386
           NENA PPAASPSIVN+KALGLPVS+L
Sbjct: 361 NENAPPPAASPSIVNAKALGLPVSKL 386

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13873334|dbj|BAB44155.1| hydroxypyruvate reductase [Bruguiera gymnorhiza]

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/386 (93%), Positives = 382/386 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP G+YRVVSTKPMPGTRWINLL++QDCR+EICT+KKTILSVEDIIAL+G
Sbjct: 1   MAKPVSIEVWNPRGRYRVVSTKPMPGTRWINLLVQQDCRLEICTEKKTILSVEDIIALMG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALS+AGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA++MDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAATMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LA+MKKEA+LVNCSRGPVIDEVALVEHL++NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLASMKKEAVLVNCSRGPVIDEVALVEHLRRNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP+WG+PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVSRL 386
           NENA PPAA PSIVNSKALGLPVS+L
Sbjct: 361 NENAPPPAACPSIVNSKALGLPVSKL 386

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428049|ref|XP_002279281.1| PREDICTED: glycerate dehydrogenase [Vitis vinifera] gi|297744600|emb|CBI37862.3| unnamed protein product [Vitis vinifera]

 Score =  736 bits (1901), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/386 (93%), Positives = 381/386 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIW +PN+VEPFL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWHDPNKVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVSRL 386
           NEN+ PPAASPSIVN+KALGLPVS+L
Sbjct: 361 NENSLPPAASPSIVNAKALGLPVSKL 386

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078341|ref|XP_002305524.1| predicted protein [Populus trichocarpa] gi|222848488|gb|EEE86035.1| predicted protein [Populus trichocarpa]

 Score =  736 bits (1899), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/386 (93%), Positives = 382/386 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQ+KTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQQKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVLGKIKGYP+WG+PN+V PFL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWGDPNRVAPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVSRL 386
           NENA PPAASPSIVN+KALGLPVS+L
Sbjct: 361 NENAPPPAASPSIVNAKALGLPVSKL 386

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805559|emb|CAN65023.1| hypothetical protein VITISV_020147 [Vitis vinifera]

 Score =  724 bits (1870), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/379 (93%), Positives = 374/379 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIW +PN+VEPFL
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWHDPNKVEPFL 360

Query: 361 NENAQPPAASPSIVNSKAL 379
           NEN+ PPAASPSIVN+KAL
Sbjct: 361 NENSLPPAASPSIVNAKAL 379

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493492|gb|AFK34812.1| unknown [Lotus japonicus]

 Score =  720 bits (1859), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/384 (91%), Positives = 376/384 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP+GKYRVVSTKPMPGTRWINLLI+QDCR+EICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  EKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAY  FLKANGE PVTWKRASSMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAAFLKANGETPVTWKRASSMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHL+QNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEAALVEHLRQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           +EPYMKPGL+E+KNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP+W + N+VEPFL
Sbjct: 301 EEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANKVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVS 384
           +ENAQPPAASPSIVN+KALGLPVS
Sbjct: 361 DENAQPPAASPSIVNAKALGLPVS 384

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118723307|gb|ABL10359.1| hydroxypyruvate reductase [Solenostemon scutellarioides]

 Score =  720 bits (1858), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/386 (91%), Positives = 376/386 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+ +EV+NPNGKYRVVSTK MPGTRWINLL++QDCR+EICT+KKTILSVEDII+LIG
Sbjct: 1   MAKPLQVEVYNPNGKYRVVSTKSMPGTRWINLLVDQDCRLEICTEKKTILSVEDIISLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGG AFSNMAVGYNNVDV+AANK+G+AVGNTPGVLT
Sbjct: 61  NKCDGVIGQLTEDWGEKLFSALSRAGGTAFSNMAVGYNNVDVDAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFL+ANGEQPVTWKRASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLQANGEQPVTWKRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL +MKNAI+VPHIASASKWTREGMATLAALNVLGKIKGYPIWG+PN V PFL
Sbjct: 301 DEPYMKPGLEKMKNAIIVPHIASASKWTREGMATLAALNVLGKIKGYPIWGDPNNVAPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVSRL 386
           NEN+ PPAA PSIVNSKALGLPVS+L
Sbjct: 361 NENSPPPAACPSIVNSKALGLPVSKL 386

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506608|gb|AFK41370.1| unknown [Medicago truncatula]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/386 (90%), Positives = 376/386 (97%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSI+VWNPNGKYRVVSTK MPGTRWINLLI+QDCR+EICT+KKTILSVED IALIG
Sbjct: 1   MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDTIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALS+AGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG FLKANGE PVTWKRA+SMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAIL+NCSRGPVIDEVALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL+E+KNA+VVPHIASASKWTREGMATLAALNVLGKIKGYP+W + N+VEPFL
Sbjct: 301 DEPYMKPGLAELKNAVVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVSRL 386
           NENAQPPAA PSIVN+KAL LPVS+L
Sbjct: 361 NENAQPPAACPSIVNAKALSLPVSKL 386

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723797|ref|NP_001234988.1| conversion of hydroxypyruvate to glycerate [Glycine max] gi|29293057|gb|AAO73866.1|AF503360_1 putative NADH-dependent hydroxypyruvate reductase [Glycine max] gi|255639853|gb|ACU20219.1| unknown [Glycine max]

 Score =  711 bits (1834), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/386 (89%), Positives = 374/386 (96%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP+GKYRVVSTKPMPGTRWINLL++ D R+EICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLVQNDVRLEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ LS+AGGKAFSNMAVGYNNVDV+AANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEQLFSTLSKAGGKAFSNMAVGYNNVDVDAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKF+TAY  FLKA+GE PVTWKRA++MDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFITAYATFLKASGETPVTWKRAATMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAIL+NCSRGPVIDE ALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEAALVEHLKQNPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           +EPYMKPGL+E+KNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP+W + N+VEPFL
Sbjct: 301 EEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVSRL 386
           NENAQPPAASPSIVN+KALGLP S+L
Sbjct: 361 NENAQPPAASPSIVNAKALGLPTSKL 386

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	386
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.305	0.365	0.389	4.7e-40
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.621	0.740	0.355	1.1e-34
UNIPROTKB|Q4KI01	324	ghrB2 "Glyoxylate/hydroxypyruv	0.621	0.740	0.359	2.8e-34
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.629	0.740	0.339	4.6e-34
TIGR_CMR|BA_5135	330	BA_5135 "D-isomer specific 2-h	0.795	0.930	0.295	5.2e-33
TIGR_CMR|SPO_1570	330	SPO_1570 "D-isomer specific 2-	0.691	0.809	0.306	1.8e-32
TIGR_CMR|CHY_2698	525	CHY_2698 "D-3-phosphoglycerate	0.378	0.278	0.36	2.6e-32
UNIPROTKB|P37666	324	ghrB "GhrB" [Escherichia coli	0.626	0.746	0.360	4.2e-31
UNIPROTKB|Q5TM04	328	2-KGalARE "Glyoxylate/hydroxyp	0.650	0.765	0.344	1.1e-30
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.670	0.789	0.326	1.8e-30

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 236 (88.1 bits), Expect = 4.7e-40, Sum P(2) = 4.7e-40
 Identities = 46/118 (38%), Positives = 75/118 (63%)

Query:   229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ 288
             +++E+L+ AD I+++   +   +H+I++E+   MKK A +VN SRGP++ E AL   LK 
Sbjct:   191 TLEELLQTADFITINCAYNPKLHHMIDEEQFKMMKKTAYIVNASRGPIMHEAALAHALKT 250

Query:   289 NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             N +    LDVFE EP +   L  +KN ++ PH+ +A+  TR+ MA +A  N+L  +KG
Sbjct:   251 NEIEGAALDVFEFEPKITEELKGLKNVVLAPHVGNATFETRDAMAEMAVRNILAVLKG 308

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 376 (137.4 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 91/256 (35%), Positives = 139/256 (54%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N DV+  ++ GI + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDVDYLSERGILLTNTPDVLTESTADLGFSLIMSSARRVAELDAYTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    + T LE+ + A 
Sbjct:   131 TRSIEPPHFGTDVHGKTLGIVGMGNIGAAIARRGRLGFNMPILYSGNSRKTELEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S+D++L EAD + L   L + T HLI +  L+ MK  AIL+N
Sbjct:   190 -QF--------------RSLDQLLAEADFVCLVVPLSEKTKHLIGRRELSLMKPGAILIN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
              +RGP++DE AL+E L+   +   GLDV+E EP  +  L ++KNA+ +PHI SA+  TR+
Sbjct:   235 IARGPIVDEPALIEALQNGTIRGAGLDVYEKEPLKESPLFQLKNAVTLPHIGSATTETRQ 294

Query:   331 GMATLAALNVLGKIKG 346
              MA  A  N+   + G
Sbjct:   295 AMADRAYHNLRNALLG 310

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q4KI01 ghrB2 "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 92/256 (35%), Positives = 138/256 (53%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N D+   N+ G+ + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDLAYFNERGLMLTNTPDVLTESTADLAFALLMSSARRVAELDAWTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    +   LE+ + A 
Sbjct:   131 QASVGPALFGCDVHGKTLGIVGMGNIGAAIARRGRLGFGMPILYSGNSRKAALEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S++++L EAD + L   L + T HLI+   LA MK  AILVN
Sbjct:   190 -QF--------------RSLEQLLAEADFVCLVVPLSEKTKHLISHRELALMKPSAILVN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
              SRGPV+DE AL+E L++  +   GLDV+E EP  +  L ++KNA+ +PHI SA+  TR+
Sbjct:   235 ISRGPVVDEPALIEALQKGQIRGAGLDVYEKEPLAESPLFQLKNAVTLPHIGSATHETRD 294

Query:   331 GMATLAALNVLGKIKG 346
              MA  A  N+   + G
Sbjct:   295 AMAARAMSNLRSALLG 310

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=ISS

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0019521 "D-gluconate metabolic process" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 89/262 (33%), Positives = 135/262 (51%)

Query:    82 LSRAGG--KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIV 139
             ++RAG   +  +    G +N+DV +A + GI V NTPGV                 RR+ 
Sbjct:    65 MARAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMALILAVPRRMH 124

Query:   140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
             E  + M AG +DGW P   +G  L G+ +G+IG GRIG A AR     F M + Y++   
Sbjct:   125 EGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARR-ARAFGMQIHYHNRKP 183

Query:   200 -ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
              ++R+E+ + A              W    S+D++L   D++S++      T+HLIN  R
Sbjct:   184 VSSRIEESLEA------------TYW---DSLDQMLARMDIVSINCPHTPATFHLINARR 228

Query:   259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVV 318
             L  MK EA ++N +RG VIDE AL   ++   +   GLDVFE EP + P L  + N +++
Sbjct:   229 LGLMKPEAYIINTARGEVIDEAALARAIRAGKIAGAGLDVFEREPAVNPELIGLPNVLLL 288

Query:   319 PHIASASKWTREGMATLAALNV 340
             PH+ SA+   R  M     +N+
Sbjct:   289 PHMGSATIEGRTEMGEKVIINI 310

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|BA_5135 BA_5135 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 99/335 (29%), Positives = 165/335 (49%)

Query:    15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             K +V   +P+P   ++   + + C  E   Q + +   + ++  I DK DG++       
Sbjct:    12 KPKVYIAEPVP--TFVENYLSEHCDYEKWEQNEKVPR-DVLLEKIQDK-DGLLN-FGSAI 66

Query:    75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXX 134
              E L  A      K  SN++VGY+N D+ A  K+ +   NTP V                
Sbjct:    67 NEELLEAAPNL--KVVSNISVGYDNFDLQAMAKHNVIGTNTPYVLDDTVADLVFALMLSA 124

Query:   135 XRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              RR+ E D +++ G ++  +     G  +   T+G+IG GRIG A A+    GF M+++Y
Sbjct:   125 GRRVCELDSYVKNGEWNAEIGKEHFGLDVHHSTIGIIGMGRIGEAVAKRAKFGFDMDVLY 184

Query:   195 YDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYH 252
             Y+  +    E KF   Y                   +  +L+++D ++ L P+ D+T YH
Sbjct:   185 YNRRRKEEAEQKFDATY-----------------CDLQTLLKQSDFIVLLTPLTDET-YH 226

Query:   253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSE 311
             LI ++  + MK+ AI +N SRG  +DE AL++ L +  +F  G+D F  EP  K   L  
Sbjct:   227 LIGEKEFSFMKETAIFINASRGKTVDEEALIDALTEKKIFAAGIDTFTQEPIQKDNPLLS 286

Query:   312 MKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             ++N + +PHI SA+  TR+ MA  AA N++  ++G
Sbjct:   287 LQNVVTLPHIGSATLKTRQQMAMTAAENLVAGLQG 321

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_1570 SPO_1570 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 87/284 (30%), Positives = 141/284 (49%)

Query:    64 DGVIGQLTEDWG-ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
             D ++  +T+  G E L     +   +  +N  VGY+++D +A   +GI V NTP V    
Sbjct:    55 DAILPTVTDKLGAEALDVTAPQT--RLLANYGVGYSHIDSDAVRAHGITVSNTPDVLSEC 112

Query:   123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                          RR  E +  +RAG + GW P   VG+ + G+ +G++G GRIG A A+
Sbjct:   113 TADIAMTLMLMVARRAGEGERELRAGQWTGWRPTHLVGSKVSGKVLGIVGFGRIGQAMAQ 172

Query:   183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
                 GF M ++  +  ++   +  +  YG              +  ++D +L + D +SL
Sbjct:   173 RAHHGFGMKILVQN--RSAVPQDVLDRYGA------------TQVETLDAMLPQCDFVSL 218

Query:   243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
             H        HLIN  RL  MK +A L+N +RG V+DE AL + L  + +    LDVF+ E
Sbjct:   219 HCPGGAANRHLINSRRLDLMKPDAFLINTARGEVVDEHALAQALMFDCIGGAALDVFDGE 278

Query:   303 PYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             P + P L +  N +++PH+ SA++ TRE M      N++   +G
Sbjct:   279 PRIAPVLLDCDNLVMLPHLGSATRETREAMGMRVLDNLVDYFEG 322

GO:0008152 "metabolic process" evidence=ISS

GO:0050578 "(R)-2-hydroxyacid dehydrogenase activity" evidence=ISS

TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 239 (89.2 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 54/150 (36%), Positives = 85/150 (56%)

Query:   200 ATRLEKFVT---AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             A R++ F T    Y  F+     Q +      S++E+L+ +D++++H  L+  T +LIN+
Sbjct:   155 AKRVKAFETRVIGYDPFISEERAQ-MLGITLMSLEELLQNSDIVTMHLPLNNETRNLINR 213

Query:   257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI 316
             ERL  MKK A ++NC+RG +IDE AL E LK   +    LDVF  EP  +  L E+ N I
Sbjct:   214 ERLKLMKKSAFIINCARGGIIDEEALYEALKAGEIAGAALDVFSKEPLTESPLFELPNVI 273

Query:   317 VVPHIASASKWTREGMATLAALNVLGKIKG 346
             V PH+ +++K  +  +A   A  +   +KG
Sbjct:   274 VTPHLGASTKEAQINVAIDVAREIASVLKG 303

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=ISS

UNIPROTKB|P37666 ghrB "GhrB" [Escherichia coli K-12 (taxid:83333)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 94/261 (36%), Positives = 134/261 (51%)

Query:    88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
             +A S ++VGY+N DV+A     I + +TP V                 RR+VE  E ++A
Sbjct:    68 RATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKA 127

Query:   148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
             G +   +   + G  +  +T+G++G GRIG A A+    GF M +    LY A R  K  
Sbjct:   128 GEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPI----LYNARRHHK-- 181

Query:   208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              A  +F   N        R   +D +L+E+D + L   L   T+HL   E+ A MK  AI
Sbjct:   182 EAEERF---NA-------RYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAI 231

Query:   268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASAS 325
              +N  RGPV+DE AL+  L++  +   GLDVFE EP     P LS M N + VPHI SA+
Sbjct:   232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS-MANVVAVPHIGSAT 290

Query:   326 KWTREGMATLAALNVLGKIKG 346
               TR GMA  A  N++  ++G
Sbjct:   291 HETRYGMAACAVDNLIDALQG 311

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046181 "ketogluconate catabolic process" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019521 "D-gluconate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=IEA;IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q5TM04 2-KGalARE "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 94/273 (34%), Positives = 136/273 (49%)

Query:    88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
             +A ++++VG +N D++   +  I + NTP V                 RR+VE    +RA
Sbjct:    68 RAVASVSVGVDNYDIDYLTQRRILLSNTPDVLTETTADTGFALILATARRVVELANLVRA 127

Query:   148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
             G +   +     G  + G+T+G+IG GRIG A A+    GF M LIY+       +E+  
Sbjct:   128 GQWQRNIGPAHFGTDVHGKTLGIIGMGRIGEALAQRGHFGFGMPLIYHSTRPKPAVEQRF 187

Query:   208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              A  Q+               S++++L EAD I L   L + T  LI     A M+ E+I
Sbjct:   188 NA--QY--------------RSLEQLLEEADFICLTLPLTERTQGLIGAREFALMRPESI 231

Query:   268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASAS 325
              +N SRG V+DE AL+E L+Q  +   GLDVFE EP  +  P L ++ N +  PHI SA+
Sbjct:   232 FINISRGKVVDEAALIEALQQRRIRGAGLDVFEREPLDHDSP-LLQLPNVVATPHIGSAT 290

Query:   326 KWTREGMATLAALNVLGKIKGYPIWGNPNQVEP 358
               TRE MA  A  N+L  + G      PN V P
Sbjct:   291 HETREAMARCAVDNLLAALAGQR---PPNLVNP 320

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

GO:0046487 "glyoxylate metabolic process" evidence=ISS

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 91/279 (32%), Positives = 137/279 (49%)

Query:    82 LSRAGGKA--FSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIV 139
             L++AG +    +N   G +++DV  A + GI V NTPGV                 RRI 
Sbjct:    65 LAQAGERMRLIANYGAGVDHIDVATARQRGILVSNTPGVLTDDTADMTMALILAVTRRIP 124

Query:   140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
             E    M+   + GW P   +G  + G+ +G++G GRIG A AR     F M + Y++   
Sbjct:   125 EGLAVMQKNEWTGWAPTALLGGRVGGRRLGILGMGRIGQAVARR-ASAFGMQIHYHN--- 180

Query:   200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259
               RL   V      L+A      TW    S+D+++   DVIS++     +T+HL+N  RL
Sbjct:   181 RRRLRPEVE---DALEA------TWW--DSLDQMIARMDVISVNCPSTPSTFHLMNARRL 229

Query:   260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319
               MK   ++VN SRG VIDE AL   ++   +   GLDV+E    + P L E+ N +++P
Sbjct:   230 KLMKPTGVIVNTSRGEVIDENALTRMIRTGEIAGAGLDVYEHGTQVNPRLRELPNVVLLP 289

Query:   320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEP 358
             H+ SA+   R  M     +N+     G+     P+QV P
Sbjct:   290 HMGSATLEGRIEMGEKVIINIKTFADGHR---PPDQVVP 325

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UYR1	GYAR_PYRAB	1, ., 1, ., 1, ., 2, 6	0.3916	0.8031	0.9253	yes	no
Q9C9W5	HPR1_ARATH	1, ., 1, ., 1, ., 2, 9	0.9093	1.0	1.0	yes	no
P13443	DHGY_CUCSA	1, ., 1, ., 1, ., 2, 9	0.9105	0.9844	0.9947	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.998
4th Layer	1.1.1.29	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	386
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	0.0
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-133
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	2e-84
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	1e-83
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	3e-80
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	3e-78
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	3e-78
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	4e-76
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	2e-71
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	4e-64
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	5e-64
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-62
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	1e-61
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	6e-60
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	1e-58
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	1e-58
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	1e-57
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	1e-56
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	3e-56
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	3e-56
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	1e-55
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	7e-54
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	1e-53
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	3e-53
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	9e-53
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	1e-50
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	2e-49
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	6e-49
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	5e-47
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	6e-47
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	1e-45
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	6e-44
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	2e-40
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	1e-39
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	2e-38
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	9e-37
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	4e-34
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	2e-32
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	4e-32
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	3e-31
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	3e-30
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	5e-30
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	5e-30
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	5e-28
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	3e-27
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	1e-25
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	1e-25
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	7e-25
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	6e-24
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	3e-23
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	3e-22
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	4e-18
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	1e-16
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	4e-15
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	5e-15
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	4e-14
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	2e-13
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	7e-13
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	3e-12
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	6e-07
cd01620	317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	2e-05

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  807 bits (2086), Expect = 0.0
 Identities = 361/386 (93%), Positives = 381/386 (98%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++QDCRVEICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKERLA MKKEA+LVN SRGPVIDEVALVEHLK NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300

Query: 301 DEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFL 360
           DEPYMKPGL++MKNA+VVPHIASASKWTREGMATLAALNVLGK+KGYP+WG+PN+VEPFL
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPNRVEPFL 360

Query: 361 NENAQPPAASPSIVNSKALGLPVSRL 386
           NENA PPAASPSIVN+KALGLPVS+L
Sbjct: 361 NENAPPPAASPSIVNAKALGLPVSKL 386

Length = 386

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  383 bits (986), Expect = e-133
 Identities = 135/332 (40%), Positives = 188/332 (56%), Gaps = 24/332 (7%)

Query: 16  YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWG 75
            +V+ T+ +P    + LL  +   VE+   +   L  E+++       DG++  LT+   
Sbjct: 1   PKVLVTRRLPE-EALALL-REGFEVEVW-DEDRPLPREELLEAAKG-ADGLLCTLTDKID 56

Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAA 135
             L  A      K  +N +VGY+++DV+AA   GI V NTP VLT+ TA+LA +L LAAA
Sbjct: 57  AELLDAAPPL--KVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAA 114

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE D F+RAG + GW P L +G  L G+T+G++G GRIG A AR    GF M ++Y+
Sbjct: 115 RRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAK-GFGMKILYH 173

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           +  +    E+ + A                   S+DE+L E+D +SLH  L   T HLIN
Sbjct: 174 NRSRKPEAEEELGAR----------------YVSLDELLAESDFVSLHCPLTPETRHLIN 217

Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKN 314
            ERLA MK  AIL+N +RG V+DE ALVE LK   +   GLDVFE EP      L  + N
Sbjct: 218 AERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPN 277

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            +++PHI SA+  TR  MA LAA N+L  + G
Sbjct: 278 VVLLPHIGSATVETRTAMAELAADNLLAVLAG 309

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  259 bits (664), Expect = 2e-84
 Identities = 116/320 (36%), Positives = 172/320 (53%), Gaps = 34/320 (10%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE-------DWGETLFAALSRAG 86
           +E++  V        ++S E+++  I D  D +I  L+        D  + L        
Sbjct: 17  LEENFEV-TYYDGLGLISKEELLERIAD-YDALITPLSTPVDKEIIDAAKNL-------- 66

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K  +N   G++N+DV+ A + GI V NTP V TE TAEL   L LA ARRI E D  MR
Sbjct: 67  -KIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMR 125

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
            G + GW P  F+G+ L G+T+G+IG GRIG A AR   + F M ++YY+ ++ +   + 
Sbjct: 126 RGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARR-AKAFGMKILYYNRHRLSEETE- 183

Query: 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266
               G           T+     +DE+L+E+D +SLH      T+HLI+      MK  A
Sbjct: 184 -KELG----------ATYV---DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTA 229

Query: 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK 326
            L+N +RGP++DE ALV+ LK   +    LDVFE EP + P L ++ N I+ PHI +A+ 
Sbjct: 230 YLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSPELKKLDNVILTPHIGNATV 289

Query: 327 WTREGMATLAALNVLGKIKG 346
             R+ MA  AA N++  ++G
Sbjct: 290 EARDAMAKEAADNIISFLEG 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  256 bits (657), Expect = 1e-83
 Identities = 128/312 (41%), Positives = 171/312 (54%), Gaps = 30/312 (9%)

Query: 32  LLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI-GQLTEDWGETLFAALSRAGGKAF 90
           LL      V +    +  L+ E++I L+ D  DGVI G   +   E + AA  R   K  
Sbjct: 19  LLEAAGFEVVLNPLGR-PLTEEELIELLKD-ADGVIAG--LDPITEEVLAAAPRL--KVI 72

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           S   VGY+N+D+ AA K GI V NTPG  + + AEL   L LA AR+I +AD  +RAG  
Sbjct: 73  SRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAG-- 130

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW     VG  L G+T+G+IG GRIG A AR +  GF M ++ YD Y            
Sbjct: 131 -GWDR--PVGTELYGKTLGIIGLGRIGKAVARRLS-GFGMKVLAYDPYPDE--------- 177

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
            +F K +G + V      S++E+L+E+D ISLH  L   T HLIN   LA MK  AIL+N
Sbjct: 178 -EFAKEHGVEFV------SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILIN 230

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTR 329
            +RG ++DE AL E LK   +    LDVFE+EP      L E+ N I+ PHI +++K   
Sbjct: 231 TARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAV 290

Query: 330 EGMATLAALNVL 341
             M T+AA NV+
Sbjct: 291 LRMGTMAAQNVI 302

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  248 bits (636), Expect = 3e-80
 Identities = 122/338 (36%), Positives = 174/338 (51%), Gaps = 29/338 (8%)

Query: 14  GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTED 73
            K  V+ST+ +P    +   +++   VE        L+ +  +A      D VI  + + 
Sbjct: 1   MKIVVLSTRKLP--PEVLERLKEKFEVERYEDD---LTPDTELAERLKDADAVITFVNDR 55

Query: 74  WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
               +   L     K  +  + GY+NVD+ AA + GI V N PG  TE  AE A +L LA
Sbjct: 56  IDAEVLEKLPGL--KLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILA 113

Query: 134 AARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
            ARRI E D  +R G +     P+  +G  L+G+T+G+IG GRIG A AR + +GF M +
Sbjct: 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRL-KGFGMKV 172

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD       EK      +++               +DE+L E+D+ISLH  L   T H
Sbjct: 173 LYYDRSPNPEAEK--ELGARYV--------------DLDELLAESDIISLHCPLTPETRH 216

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----G 308
           LIN E LA MK  AILVN +RG ++DE AL++ LK   +   GLDVFE+EP +       
Sbjct: 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLR 276

Query: 309 LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           L    N ++ PHIASA++  R+ MA LA  N+     G
Sbjct: 277 LDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDG 314

Length = 324

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  242 bits (621), Expect = 3e-78
 Identities = 116/325 (35%), Positives = 160/325 (49%), Gaps = 52/325 (16%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           + LL E    V++       LS E+++A+I D  D +I     ++T +    +  A    
Sbjct: 13  LELLREAGIEVDV----APGLSEEELLAIIAD-ADALIVRSATKVTAE----VIEAAPRL 63

Query: 82  --LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
             + RAG        VG +N+DV AA   GI V N PG  T + AE   +L LA AR I 
Sbjct: 64  KVIGRAG--------VGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIP 115

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY- 198
           +AD  +RAG    W    F+G  L+G+T+G++G GRIG   AR     F M ++ YD Y 
Sbjct: 116 QADASLRAG---KWDRKKFMGVELRGKTLGIVGLGRIGREVARRAR-AFGMKVLAYDPYI 171

Query: 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
            A R                          S+DE+L EAD ISLH  L   T  LIN E 
Sbjct: 172 SAERAAAGGV-----------------ELVSLDELLAEADFISLHTPLTPETRGLINAEE 214

Query: 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAI 316
           LA MK  AIL+N +RG ++DE AL + LK   +    LDVFE EP       L  + N I
Sbjct: 215 LAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEP-PPADSPLLGLPNVI 273

Query: 317 VVPHIASASKWTREGMATLAALNVL 341
           + PH+ ++++  +E +A  AA  VL
Sbjct: 274 LTPHLGASTEEAQERVAVDAAEQVL 298

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  243 bits (623), Expect = 3e-78
 Identities = 138/336 (41%), Positives = 195/336 (58%), Gaps = 27/336 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E+   VE+   ++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITREIP-ENGIEML-EEHFEVEVWEDEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   +  +N AVGY+N+DV  A + GI V NTPGVLTE TA+ A +L LA 
Sbjct: 58  DCEVFEAAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR+VEAD F+R+G +      W P +F+G  + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    EK + A                    ++E+LRE+D +SLH  L K T
Sbjct: 175 RILYYSRTRKPEAEKELGA----------------EYRPLEELLRESDFVSLHVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            +KN ++ PHI SA+   REGMA L A N++   +G
Sbjct: 279 SLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRG 314

Length = 333

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  237 bits (607), Expect = 4e-76
 Identities = 107/295 (36%), Positives = 149/295 (50%), Gaps = 23/295 (7%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107
             L  +++ AL+ D  D +I   T      + A   +   K       G +N+D++AA K
Sbjct: 28  DDLLADELEALLAD-ADALIVSSTTPVTAEVLAKAPKL--KFIQVAGAGVDNIDLDAAKK 84

Query: 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167
            GI V N PG   E  AE A  L LA  RR+  AD  +R G    W    F G  L+G+T
Sbjct: 85  RGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWLWAG--FPGYELEGKT 142

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG++G GRIG   A+ + + F M ++YYD  +    E+                    R 
Sbjct: 143 VGIVGLGRIGQRVAKRL-QAFGMKVLYYDRTRKPEPEED----------------LGFRV 185

Query: 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
            S+DE+L ++DV+ LH  L   T HLIN+E LA MK  A+LVN +RG ++DE AL+  LK
Sbjct: 186 VSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALK 245

Query: 288 QNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMATLAALNVL 341
              +    LDVFE EP      L E+ N I+ PHIA  ++  RE MA +A  N+ 
Sbjct: 246 SGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENLE 300

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  226 bits (578), Expect = 2e-71
 Identities = 110/309 (35%), Positives = 153/309 (49%), Gaps = 25/309 (8%)

Query: 52  VEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIA 111
            E+ +       D +I  +T    E + AA      KA      G +N+D+ AA K GI 
Sbjct: 35  DEEELLEALADADALIVSVTP-VTEEVLAAAPN--LKAIGRAGAGVDNIDLEAATKRGIL 91

Query: 112 VGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171
           V N PG    + AEL  +L LA ARRI +AD   R G    W    F G  L G+TVG+I
Sbjct: 92  VVNAPGGNAISVAELVLALLLALARRIPDADASQRRG---EWDRKAFRGTELAGKTVGII 148

Query: 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231
           G GRIG A A+ + + F M +I YD Y            G                 S+D
Sbjct: 149 GLGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAGVDGVVG---------------VDSLD 192

Query: 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291
           E+L EAD+++LH  L   T  LIN E LA MK  AIL+N +RG V+DE AL+  L    +
Sbjct: 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252

Query: 292 FRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
               LDVFE+EP +     L ++ N I+ PHI  ++   +E +A + A N++  + G P+
Sbjct: 253 AGAALDVFEEEP-LPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPV 311

Query: 350 WGNPNQVEP 358
             N  +V+ 
Sbjct: 312 VNNAPEVDL 320

Length = 324

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  206 bits (526), Expect = 4e-64
 Identities = 92/247 (37%), Positives = 130/247 (52%), Gaps = 20/247 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           VG +N+DV  A K GI V NTPG  + + AEL   L L+ AR I  A+  M+ G    W 
Sbjct: 72  VGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLG---KWN 128

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              + G  L+G+T+G+IG GRIG   A++      MN+I YD Y        +       
Sbjct: 129 KKKYKGIELRGKTLGIIGFGRIGREVAKI-ARALGMNVIAYDPYPKDEQAVELGV----- 182

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                      +  S++E+L+ +D ISLH  L   T H+INK+ L  MK  AI++N SRG
Sbjct: 183 -----------KTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRG 231

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            VIDE AL+E LK   +    LDVFE+EP     L E+ N  + PHI +++K  +E +  
Sbjct: 232 GVIDEEALLEALKSGKLAGAALDVFENEPPPGSKLLELPNVSLTPHIGASTKEAQERIGE 291

Query: 335 LAALNVL 341
             A  ++
Sbjct: 292 ELANKII 298

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  207 bits (528), Expect = 5e-64
 Identities = 99/282 (35%), Positives = 146/282 (51%), Gaps = 22/282 (7%)

Query: 65  GVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTA 124
           G  G   E+    L + L     K  ++   GY+ +DV+A  K GI V NTPG + E TA
Sbjct: 60  GETGPFDEE----LISPLP-PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATA 114

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           + A  L L A R    A+   RAG + G+L      +  +G+T+G++G G IG A AR  
Sbjct: 115 DTALFLILGALRNFSRAERSARAGKWRGFLDLTLAHDP-RGKTLGILGLGGIGKAIARKA 173

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
              F M +IY++  +     +   A                   S+DE+L ++DV+SL+ 
Sbjct: 174 A-AFGMKIIYHNRSRLPEELEKALA---------------TYYVSLDELLAQSDVVSLNC 217

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304
            L   T HLINK+  A MK   I+VN +RG VIDE ALV+ L+   +   GLDVFE+EP 
Sbjct: 218 PLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFENEPE 277

Query: 305 MKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           + PGL +M N  ++PH+ + +  T+E M  L   N+   ++ 
Sbjct: 278 VNPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENIEAFLET 319

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  202 bits (517), Expect = 1e-62
 Identities = 104/302 (34%), Positives = 148/302 (49%), Gaps = 34/302 (11%)

Query: 53  EDIIALIGDKCDGVIGQ---LTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           +++I    D  D ++ Q   +T +    +  AL R   K      VG +NVDV AA + G
Sbjct: 36  DELIEAAAD-ADALLVQYAPVTAE----VIEALPR--LKVIVRYGVGVDNVDVAAATERG 88

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL--LKGQT 167
           I V N P   TE  A+ A +L LA AR++   D  +RAG +D  +     G +  L+G T
Sbjct: 89  IPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWDWTV----GGPIRRLRGLT 144

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           +G++G GRIG A A+   + F   +I YD Y                  +G   +   R 
Sbjct: 145 LGLVGFGRIGRAVAKRA-KAFGFRVIAYDPY----------------VPDGVAALGGVRV 187

Query: 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
            S+DE+L  +DV+SLH  L   T HLI+ E LA MK  A LVN +RG ++DE AL   LK
Sbjct: 188 VSLDELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARALK 247

Query: 288 QNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
              +    LDV E+EP      L    N I+ PH A  S+ +   +   AA  V+  ++G
Sbjct: 248 SGRIAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRG 307

Query: 347 YP 348
            P
Sbjct: 308 EP 309

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  200 bits (511), Expect = 1e-61
 Identities = 115/338 (34%), Positives = 163/338 (48%), Gaps = 32/338 (9%)

Query: 17  RVVSTKPMPGTRW--INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           +V+   P        +  L+     VE+     T   +++  AL+ D  D ++  + +  
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEV----VTAAELDEEAALLAD-ADVLVPGMRKVI 55

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L AA  R   +      VG + VD+ AA   GI V N PG   E+ AE A  L LA 
Sbjct: 56  DAELLAAAPRL--RLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLAL 113

Query: 135 ARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
            RR+ EAD  +RAG    W  P       L G+TVG++G G IG A AR +  GF + +I
Sbjct: 114 LRRLPEADRELRAG---RWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLR-GFGVEVI 169

Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253
           YYD               +F     E+     R   +DE+L E+DV+SLH  L   T HL
Sbjct: 170 YYD---------------RFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHL 214

Query: 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSE 311
           I  E LA MK  AIL+N +RG ++DE AL+  L+   +   GLDVF  EP + P   L  
Sbjct: 215 IGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEP-LPPDDPLLR 273

Query: 312 MKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           + N I+ PHIA  +  + + MA + A N+   ++G P 
Sbjct: 274 LDNVILTPHIAGVTDESYQRMAAIVAENIARLLRGEPP 311

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  191 bits (487), Expect = 6e-60
 Identities = 88/196 (44%), Positives = 109/196 (55%), Gaps = 24/196 (12%)

Query: 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
           +L LA ARRI EAD  +RAG    W P+  +G  L G+TVG+IG GRIG A AR + + F
Sbjct: 2   ALLLALARRIPEADRQVRAG---RWRPDALLGRELSGKTVGIIGLGRIGRAVARRL-KAF 57

Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M +I YD Y     E     Y                  S+DE+L E+DV+SLH  L  
Sbjct: 58  GMKVIAYDRYPKAEAEALGARY-----------------VSLDELLAESDVVSLHLPLTP 100

Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG 308
            T HLIN ERLA MK  AIL+N +RG ++DE AL+  LK   +    LDVFE EP   P 
Sbjct: 101 ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPL-PPD 159

Query: 309 --LSEMKNAIVVPHIA 322
             L E+ N I+ PHIA
Sbjct: 160 HPLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  192 bits (491), Expect = 1e-58
 Identities = 95/316 (30%), Positives = 143/316 (45%), Gaps = 23/316 (7%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           L+++   VE+  +    L  E+++    D  D +I + T      +  A      K  + 
Sbjct: 14  LLKEGGEVEVHDE----LLTEELLEAAKD-ADALIVRSTTPVTAEVLEAAPGL--KVIAR 66

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +N+D++AA + GI V N PG  TE+ AEL   L LA ARRI EAD  +RAG +  
Sbjct: 67  RGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKK 126

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
             P       L G+T+GVIG G IG   A +  +   M ++ YD Y      +       
Sbjct: 127 GGPIGL---ELYGKTLGVIGGGGIGGIGAAIA-KALGMGVVAYDPYPNPERAEEGGVEVL 182

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L               + ++    D+I+L P     T H+I  E    +K    + N  
Sbjct: 183 LLDLL------------LLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNAR 230

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 332
            G VI+E AL   L++         V E+ P +   L ++ N I+ PHIA A++  +E M
Sbjct: 231 GGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENM 290

Query: 333 ATLAALNVLGKIKGYP 348
           A  AA N+L  +KG  
Sbjct: 291 AEEAAENLLAFLKGGT 306

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  193 bits (492), Expect = 1e-58
 Identities = 91/274 (33%), Positives = 136/274 (49%), Gaps = 34/274 (12%)

Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTET 122
            DGV+ Q T  + E ++  L+  G K  +  + G + +D++ A + G+ + N P      
Sbjct: 45  YDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRA 104

Query: 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
            AE A + +L   R   E D  +  G +  W P L +G  ++  TVG+IG GRIGSA A+
Sbjct: 105 IAEFAVTQALNLLRNTPEIDRRVAKGDFR-WAPGL-IGREIRDLTVGIIGTGRIGSAAAK 162

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +GF   +I YD Y    LEKF+  Y                  S++++L++AD+ISL
Sbjct: 163 IF-KGFGAKVIAYDPYPNPELEKFLLYY-----------------DSLEDLLKQADIISL 204

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H  L K  +HLIN E  A MK  AILVN +RG ++D  AL++ L    +    LD +E+E
Sbjct: 205 HVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENE 264

Query: 303 -PYMKPGLS-------------EMKNAIVVPHIA 322
             Y     S              M N ++ PHIA
Sbjct: 265 TGYFNKDWSGKEIEDEVLKELIAMPNVLITPHIA 298

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  196 bits (500), Expect = 1e-57
 Identities = 115/314 (36%), Positives = 154/314 (49%), Gaps = 60/314 (19%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG----QLTEDWGETLFAALS----- 83
           +++    VE+    KT L  E+++ +IGD  D +I     ++T +    +  A       
Sbjct: 16  ILKDAPGVEVDV--KTGLDKEELLEIIGD-YDALIVRSATKVTAE----VLEAAKNLKVI 68

Query: 84  -RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD 142
            RAG        VG +NVDV AA + GI V N P   T + AE   +L LA AR I +A 
Sbjct: 69  GRAG--------VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAH 120

Query: 143 EFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA-RMMVEGFKMNLIYYDLY--- 198
             ++AG    W    F+G  L G+T+G+IG GRIGS  A R     F M +I YD Y   
Sbjct: 121 ASLKAGK---WERKKFMGVELYGKTLGIIGLGRIGSEVAKRAK--AFGMKVIAYDPYISP 175

Query: 199 -QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257
            +A +L              G + V      S+DE+L  AD I+LH  L   T  LI  E
Sbjct: 176 ERAAQL--------------GVELV------SLDELLARADFITLHTPLTPETRGLIGAE 215

Query: 258 RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKNAI 316
            LA MK    ++NC+RG +IDE AL E LK   +    LDVFE EP    P L E+ N +
Sbjct: 216 ELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSP-LFELPNVV 274

Query: 317 VVPHIASASKWTRE 330
           V PH+  AS  T E
Sbjct: 275 VTPHLG-AS--TAE 285

Length = 526

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  186 bits (476), Expect = 1e-56
 Identities = 94/251 (37%), Positives = 137/251 (54%), Gaps = 24/251 (9%)

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           ++  VGY+ +D++AA   GI V NTPGVLT+  A+LA  L LA  RRI  AD F+RAG  
Sbjct: 69  ASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAG-- 126

Query: 151 DGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
             W    F +   + G+ VG++G GRIG A AR  +E F M + Y+      R  K    
Sbjct: 127 -RWPKGAFPLTRKVSGKRVGIVGLGRIGRAIAR-RLEAFGMEIAYHG-----RRPK---- 175

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
                       V ++  +S+ E+  E+DV+ +       T HL+N E L  +  + +LV
Sbjct: 176 ----------PDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLV 225

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329
           N +RG V+DE AL+  L++  +   GLDVFE+EP +   L ++ N ++ PHIASA+  TR
Sbjct: 226 NVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPAALLDLDNVVLTPHIASATVETR 285

Query: 330 EGMATLAALNV 340
             M  L   N+
Sbjct: 286 RAMGDLVLANL 296

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  186 bits (475), Expect = 3e-56
 Identities = 95/333 (28%), Positives = 144/333 (43%), Gaps = 41/333 (12%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
             +L      VEI T    +L+ ++   L     D ++   T+     L       G K 
Sbjct: 17  KEILKAGGVDVEIVT---YLLNDDETAELAKG-ADAILTAFTDKIDAELLDKA--PGLKF 70

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL 149
            S  A GY+N+D++ A + GI V N P       AE   +L LA  R     DE  +   
Sbjct: 71  ISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQD 130

Query: 150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
                  +  G  L+ QTVGV+G G+IG A A+   +GF M +I YD ++   LE     
Sbjct: 131 LQ-DAGVI--GRELEDQTVGVVGTGKIGRAVAQRA-KGFGMKVIAYDPFRNPELEDKGVK 186

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
           Y                  S++E+ + +D+ISLH  L    +H+IN+E    MKK  I++
Sbjct: 187 Y-----------------VSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIII 229

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------------KPGLSEMKNA 315
           N +RG ++D  AL+E L    +F  GLDV EDE                    L    N 
Sbjct: 230 NTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALLGRRPNV 289

Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYP 348
           I+ PH A  +    + M  ++  N++  ++G  
Sbjct: 290 IITPHTAFYTDDALKNMVEISCENIVDFLEGEE 322

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  186 bits (475), Expect = 3e-56
 Identities = 99/287 (34%), Positives = 154/287 (53%), Gaps = 24/287 (8%)

Query: 66  VIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTA 124
           +I  +T ++ +  F        K  +   +GY+NVD+ AA ++G+ V   PG V  +  A
Sbjct: 51  IIASVTPNFDKEFFEYNDGL--KLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVA 108

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           E A +L L   R+I +A E ++ G +       FVG+ L G+TVG+IG G IGS  A ++
Sbjct: 109 EHAVALILTVLRKINQASEAVKEGKWT--ERANFVGHELSGKTVGIIGYGNIGSRVAEIL 166

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            EGF   ++ YD Y +           + +K  G +PV      S++E+L E+D+ISLH 
Sbjct: 167 KEGFNAKVLAYDPYVSE----------EVIKKKGAKPV------SLEELLAESDIISLHA 210

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY 304
            L + TYH+IN++  + MKK  ILVN +RG +IDE AL+E LK   +   GLDV E+EP 
Sbjct: 211 PLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEP- 269

Query: 305 MKPG--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           +K    L   +N ++ PHI + +  +  GM      ++   + G   
Sbjct: 270 IKADHPLLHYENVVITPHIGAYTYESLYGMGEKVVDDIEDFLAGKEP 316

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  184 bits (471), Expect = 1e-55
 Identities = 90/255 (35%), Positives = 132/255 (51%), Gaps = 30/255 (11%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY-- 150
           +A GYNNVD+ AA + GI V N PG  T++ A+   +L LA AR +   ++ ++AG +  
Sbjct: 72  LATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQK 131

Query: 151 -DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVT 208
              +    +    L G+T+G+IG G IG A AR+    F M +++ +   A  L E +V 
Sbjct: 132 SPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARI-ARAFGMKVLFAERKGAPPLREGYV- 189

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                               S+DE+L ++DVISLH  L   T +LIN E LA MK  AIL
Sbjct: 190 --------------------SLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAIL 229

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIVVPHIASAS 325
           +N +RG ++DE AL + L    +   GLDV   EP  +     L    N I+ PHIA AS
Sbjct: 230 INTARGGLVDEQALADALNSGKIAGAGLDVLSQEP-PRADNPLLKAAPNLIITPHIAWAS 288

Query: 326 KWTREGMATLAALNV 340
           +  R+ +  +   N+
Sbjct: 289 REARQRLMDILVDNI 303

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  180 bits (458), Expect = 7e-54
 Identities = 80/233 (34%), Positives = 120/233 (51%), Gaps = 21/233 (9%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  NVDV AA + GI V NTPG   E  AE    L LA  R I  A   ++ G +     
Sbjct: 77  GPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYY 136

Query: 156 NL-FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           N    G  L+G+TVG++G G IG   A+ + + F   ++ YD         +V    + +
Sbjct: 137 NYDGYGPELRGKTVGIVGFGAIGRRVAKRL-KAFGAEVLVYD--------PYVDP--EKI 185

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           +A+G + V      S++E+L+ +DV+SLH  L   T  +I  E  A MK  A  +N +R 
Sbjct: 186 EADGVKKV------SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARA 239

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASAS 325
            ++DE AL+E L++  +    LDVF +EP +     L ++ N  + PHIA A+
Sbjct: 240 GLVDEDALIEALEEGKIGGAALDVFPEEP-LPADHPLLKLDNVTLTPHIAGAT 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  180 bits (458), Expect = 1e-53
 Identities = 102/287 (35%), Positives = 151/287 (52%), Gaps = 26/287 (9%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGK--AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTE 121
           +G++G      GE + AAL     K  A S ++VGY+N DV+A     I + +TP VLTE
Sbjct: 47  EGLLGS-----GEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTE 101

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           T A+   +L L+ ARR+VE  E ++AG +   +   + G  +  +T+G++G GRIG A A
Sbjct: 102 TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALA 161

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           +    GF M ++Y         E+   A                R   +D +L+E+D + 
Sbjct: 162 QRAHFGFNMPILYNARRHHKEAEERFNA----------------RYCDLDTLLQESDFVC 205

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           +   L   T+HL   E+ A MK  AI +N  RGPV+DE AL+  L++  +   GLDVFE 
Sbjct: 206 IILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQ 265

Query: 302 EPYMK--PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           EP     P LS + N + VPHI SA+  TR  MA  A  N++  ++G
Sbjct: 266 EPLSVDSPLLS-LPNVVAVPHIGSATHETRYNMAACAVDNLIDALQG 311

Length = 323

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  184 bits (468), Expect = 3e-53
 Identities = 122/370 (32%), Positives = 185/370 (50%), Gaps = 67/370 (18%)

Query: 17  RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLT 71
           +V+   P+ P    I++L +    V++    +T LS E+++ +I D  D +I     ++T
Sbjct: 1   KVLIADPISPDG--IDILEDVGVEVDV----QTGLSREELLEIIPDY-DALIVRSATKVT 53

Query: 72  EDWGETLFAALS------RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAE 125
           E+    + AA        RAG        VG +N+D+ AA   GI V N P   T + AE
Sbjct: 54  EE----VIAAAPKLKVIGRAG--------VGVDNIDIEAATARGILVVNAPTGNTISAAE 101

Query: 126 LAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV 185
            A ++ LAAAR I +AD  ++ G    W    F+G  L G+T+GVIG GRIGS  A+   
Sbjct: 102 HALAMLLAAARNIPQADASLKEG---EWDRKAFMGTELYGKTLGVIGLGRIGSIVAKR-A 157

Query: 186 EGFKMNLIYYDLY----QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           + F M ++ YD Y    +A +L                     +    +DE+L  AD I+
Sbjct: 158 KAFGMKVLAYDPYISPERAEQL-------------------GVELVDDLDELLARADFIT 198

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           +H  L   T  LI  E LA MKK  I+VNC+RG +IDE AL E L++  +    LDVFE 
Sbjct: 199 VHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEK 258

Query: 302 EPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN------- 354
           EP     L ++ N I  PH+ ++++  +E +AT  A  VL  +KG P+    N       
Sbjct: 259 EPPTDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318

Query: 355 ---QVEPFLN 361
              +++P+L+
Sbjct: 319 VMEKLKPYLD 328

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  177 bits (451), Expect = 9e-53
 Identities = 113/339 (33%), Positives = 156/339 (46%), Gaps = 32/339 (9%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +VV T  +     + LL +  C V      +  LS E+++    D  DG++  + +    
Sbjct: 3   KVVITHKVH-PEVLELL-KPHCEVISNQTDEP-LSREELLRRCKD-ADGLMAFMPDRIDA 58

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
               A  R   K  +    GY+N DV A    GI V   P +LTE TAEL   L +   R
Sbjct: 59  DFLDACPRL--KIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
            I+  D F+R+G + GW P  + G  L G+TVG++G G +G A AR +  GF   L+YYD
Sbjct: 117 HILAGDRFVRSGKFGGWRPKFY-GTGLDGKTVGILGMGALGRAIARRLS-GFGATLLYYD 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                       A  Q L           R   +DE+L  +D + L   L   T HLIN 
Sbjct: 175 ------PHPLDQAEEQALNL---------RRVELDELLESSDFLVLALPLTPDTLHLINA 219

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP--------G 308
           E LA MK  A+LVN  RG V+DE A+ E LK   +     DVFE E + +P         
Sbjct: 220 EALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQE 279

Query: 309 LSEMK-NAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           L +     +  PHI SA    R  +   AALN+L  ++G
Sbjct: 280 LLDQHDRTVFTPHIGSAVDEVRLEIELEAALNILQALQG 318

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  172 bits (437), Expect = 1e-50
 Identities = 93/260 (35%), Positives = 133/260 (51%), Gaps = 30/260 (11%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD+ A  + GI V N  G  TE  AEL   L++   R IV  D  +RAG      
Sbjct: 78  TGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAG----GT 133

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
               +G  L G+TVG++G G IG   AR+  + F   ++ Y      R EK      +  
Sbjct: 134 KAGLIGRELAGKTVGIVGTGAIGLRVARL-FKAFGCKVLAYS-----RSEK------EEA 181

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           KA G   + +    S+DE+L E+D++SLH  L+  T  LI KE+LA MK+ AIL+N +RG
Sbjct: 182 KALG---IEYV---SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARG 235

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGM 332
           PV+D  AL + L +  +   G+DVF+ EP +     L    N I+ PH+A A   T E M
Sbjct: 236 PVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLHAPNTILTPHVAFA---TEEAM 292

Query: 333 ATLAAL---NVLGKIKGYPI 349
              A +   N+   + G P 
Sbjct: 293 EKRAEIVFDNIEAWLAGKPQ 312

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  169 bits (430), Expect = 2e-49
 Identities = 84/207 (40%), Positives = 113/207 (54%), Gaps = 21/207 (10%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G+NNVD+ AA + GI V   P       AE A +L LA  R+I  A   +R G +   L 
Sbjct: 78  GFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFS--LD 135

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
            L +G  L G+TVGVIG G+IG A+AR++  GF   ++ YD Y    L K    Y     
Sbjct: 136 GL-LGFDLHGKTVGVIGTGKIGQAFARILK-GFGCRVLAYDPYPNPELAKLGVEYV---- 189

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
                         +DE+L E+D+ISLH  L   T+HLIN E +A MK   +L+N SRG 
Sbjct: 190 -------------DLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGG 236

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDE 302
           +ID  AL+E LK   +  +GLDV+E+E
Sbjct: 237 LIDTKALIEALKSGKIGGLGLDVYEEE 263

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  167 bits (426), Expect = 6e-49
 Identities = 87/255 (34%), Positives = 124/255 (48%), Gaps = 53/255 (20%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADE------FMRAG 148
            G++++D+ A  + GIAV N P     T AE A +L LA +R++ EA E      F +AG
Sbjct: 72  TGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAG 131

Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           L          G  L G+T+GV+G GRIG   AR+   GF M ++ YD+      E+   
Sbjct: 132 L---------RGFELAGKTLGVVGTGRIGRRVARIAR-GFGMKVLAYDVVPD---EELAE 178

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
             G              R  S++E+L+E+D+ISLH      T+HLIN+E  A MK  A+L
Sbjct: 179 RLGF-------------RYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVL 225

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-------------------- 308
           +N +RG V+D  ALV  LK+  +   GLDV E E  ++                      
Sbjct: 226 INTARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADH 285

Query: 309 -LSEMKNAIVVPHIA 322
            L    N I+ PH+A
Sbjct: 286 ALLRKPNVIITPHVA 300

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  162 bits (412), Expect = 5e-47
 Identities = 90/260 (34%), Positives = 126/260 (48%), Gaps = 23/260 (8%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +   ++D+ AA + GI V  T G     TAEL  +L LA AR + E D  +RA
Sbjct: 71  KLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALARNLPEEDAALRA 129

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G   GW   L  G  L G+T+G++G GRIG+  AR+  + F M                V
Sbjct: 130 G---GWQTTL--GTGLAGKTLGIVGLGRIGARVARIG-QAFGMR---------------V 168

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A+   L A        + A S +E+   +DV+SLH VL   T  L+  E LA MK  A+
Sbjct: 169 IAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTAL 228

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP-YMKPGLSEMKNAIVVPHIASASK 326
           LVN SRGP++DE AL+  L+   +    LDVF+ EP      L  + N ++ PHI   ++
Sbjct: 229 LVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTE 288

Query: 327 WTREGMATLAALNVLGKIKG 346
              EG    A  N+   + G
Sbjct: 289 EAYEGFYGQAVENIAAWLAG 308

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  161 bits (411), Expect = 6e-47
 Identities = 89/250 (35%), Positives = 123/250 (49%), Gaps = 34/250 (13%)

Query: 81  ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
           A++RAG         G NN+DV+AA+K GI V NTPG      AEL  ++ LA +R I++
Sbjct: 53  AIARAG--------AGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQ 104

Query: 141 ADEFMRAGLYDG------WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           A +++  G  D            FVG  L+G+T+GVIG G IG   A        M +I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANA-ALALGMKVIG 163

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y +      ++   Q             R +S++E+L  AD I+LH  L   T  LI
Sbjct: 164 YDPYLSVEAAWKLSVEVQ-------------RVTSLEELLATADYITLHVPLTDETRGLI 210

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           N E LA MK  AIL+N +RG ++DE AL+E L +  +     D  E        L  + N
Sbjct: 211 NAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDFPEPA-----LLGHLPN 265

Query: 315 AIVVPHI-AS 323
            I  PH+ AS
Sbjct: 266 VIATPHLGAS 275

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  158 bits (403), Expect = 1e-45
 Identities = 91/298 (30%), Positives = 134/298 (44%), Gaps = 49/298 (16%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVN 103
           T  K  L++E+     G     ++G         L   L  AG K  S  ++GY+++D++
Sbjct: 28  TLTKEPLTLENAHLAEGYDGISILG--KSKISAELLEKLKEAGVKYISTRSIGYDHIDLD 85

Query: 104 AANKYGIAVGNTP----GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           AA + GI V N       V     A+    L L A R+  +     RA + D  L  L  
Sbjct: 86  AAKELGIKVSNVTYSPNSV-----ADYTVMLMLMALRKYKQI--MKRAEVNDYSLGGL-Q 137

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+  TVGVIG GRIG A  + +  GF   ++ YD Y    ++K+   Y         
Sbjct: 138 GRELRNLTVGVIGTGRIGQAVIKNL-SGFGCKILAYDPYPNEEVKKYAE-Y--------- 186

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
                     +D + +E+D+I+LH  L + TYHLINKE +A MK   I++N +RG +ID 
Sbjct: 187 --------VDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDT 238

Query: 280 VALVEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIA 322
            AL+E L+   +    LDV E E                 +   L    N I+ PH+A
Sbjct: 239 EALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELAI-LRSFPNVILTPHMA 295

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  154 bits (391), Expect = 6e-44
 Identities = 83/264 (31%), Positives = 123/264 (46%), Gaps = 28/264 (10%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G +++ +    + G+ V N  G  +   AE A +L LA A+RIVE D  +R G++ G
Sbjct: 67  PSAGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDLRRGIWHG 124

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
                     L+G+TVG++G G IG   AR++ + F M                V    +
Sbjct: 125 RAGEEPESKELRGKTVGILGYGHIGREIARLL-KAFGMR---------------VIGVSR 168

Query: 213 FLKANGEQPVTWKRASSM-DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             K   ++   +    S  DE L +ADV+ +   L K T  LI    LA MK  AILVN 
Sbjct: 169 SPKE--DEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNV 226

Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVF----EDEPYMKP---GLSEMKNAIVVPHIASA 324
            RGPV+DE AL E LK+ P+    +DV+         + P      E+ N I+ PH A  
Sbjct: 227 GRGPVVDEEALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGW 286

Query: 325 SKWTREGMATLAALNVLGKIKGYP 348
           ++ T       AA N+   ++G P
Sbjct: 287 TEETFRRRIDEAAENIRRYLRGEP 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  145 bits (369), Expect = 2e-40
 Identities = 73/231 (31%), Positives = 108/231 (46%), Gaps = 24/231 (10%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
           GI V +      E  AE   +  L A RRI       RAG  D   P    G  L G+TV
Sbjct: 95  GILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAG-RDWGWPTRRGGRGLYGRTV 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A   + +  F + ++ YD         ++ A      A G          
Sbjct: 154 GIVGFGRIGRAVVEL-LRPFGLRVLVYD--------PYLPA--AEAAALGV------ELV 196

Query: 229 SMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           S+DE+L  +DV+SLH P+  +T   +I+   LA M+  A  +N +RG ++DE AL+  L+
Sbjct: 197 SLDELLARSDVVSLHAPLTPETR-GMIDARLLALMRDGATFINTARGALVDEAALLAELR 255

Query: 288 QNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLA 336
                R  LDV + EP + P   L  + N ++ PHIA ++   R  +   A
Sbjct: 256 SG-RLRAALDVTDPEP-LPPDSPLRTLPNVLLTPHIAGSTGDERRRLGDYA 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  142 bits (361), Expect = 1e-39
 Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 34/258 (13%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            A G NNVD+  A K GIAV N  G  TE+ A+   ++ L+   RI   D ++++G Y  
Sbjct: 70  TATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSE 129

Query: 153 WLPNLFVG-----NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
               +F         +KG+  G+IG G IG   A++  + F   ++YY      + E++ 
Sbjct: 130 --SPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI-AQAFGAKVVYYSTSGKNKNEEY- 185

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                                S++E+L+ +D+IS+H  L++ T +LI  + L  +K  AI
Sbjct: 186 ------------------ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNA---IVVPHIA 322
           L+N  RG +++E  L + L +  +   GLDV E EP  K  P LS +KN    ++ PHIA
Sbjct: 228 LINVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLS-IKNKEKLLITPHIA 285

Query: 323 SASKWTREGMATLAALNV 340
            ASK  R+ +      N+
Sbjct: 286 WASKEARKTLIEKVKENI 303

Length = 311

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  139 bits (353), Expect = 2e-38
 Identities = 79/233 (33%), Positives = 119/233 (51%), Gaps = 29/233 (12%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G N VD++AA K GI V N P   T + AEL     +  ARR+ + +     G    W 
Sbjct: 73  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRG---IWN 129

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
            +    + ++G+T+G+IG G IGS  + +  E   M +I+YD+  A +L       G   
Sbjct: 130 KSATGSHEVRGKTLGIIGYGHIGSQLSVL-AEALGMRVIFYDI--AEKL-----PLG--- 178

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                     ++ SS++E+L EAD ++LH     +T ++I  E +A MKK AIL+N SRG
Sbjct: 179 --------NARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRG 230

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 321
            V+D  AL E L+   +    +DVF        EP+  P L  + N I+ PHI
Sbjct: 231 TVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSP-LQGLPNVILTPHI 282

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  136 bits (344), Expect = 9e-37
 Identities = 74/232 (31%), Positives = 112/232 (48%), Gaps = 48/232 (20%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAE-LAASLSLAAARRIVEADEFMRAGLYDGWL 154
           G +++D +   + GI   N PG    + AE + ++L + A R+                 
Sbjct: 67  GTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQRQ----------------- 109

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  LKG+TVG++G G +GS  AR  +E   MN++  D  +A              
Sbjct: 110 -----GFSLKGKTVGIVGVGNVGSRLARR-LEALGMNVLLCDPPRAEAEGDPGFV----- 158

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVN 270
                         S++E+L EAD+I+LH  L +     TYHL++++ LA +K   IL+N
Sbjct: 159 --------------SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILIN 204

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA 322
            SRG VID  AL+  L++    RV LDV+E+EP +   L + K  I  PHIA
Sbjct: 205 ASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLELLD-KVDIATPHIA 255

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  128 bits (324), Expect = 4e-34
 Identities = 74/256 (28%), Positives = 118/256 (46%), Gaps = 28/256 (10%)

Query: 50  LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           L+ E++    G   D VI +      +         G K      VG+N++D+ AA + G
Sbjct: 34  LNDENVHLAKG--HDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELG 91

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQT 167
             +   P       AELA +L++  +R             +  D   P +F    ++  T
Sbjct: 92  FKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVD---PFMF-SKEIRNST 147

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG+IG GRIG   A++  +G    +I YD+Y +   +  VT                   
Sbjct: 148 VGIIGTGRIGLTAAKLF-KGLGAKVIGYDIYPSDAAKDVVTFV----------------- 189

Query: 228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            S+DE+L+++D+ISLH P +      LINKE ++ MK  AIL+N +RG + DE A++E L
Sbjct: 190 -SLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEAL 248

Query: 287 KQNPMFRVGLDVFEDE 302
           +   +   G DV  +E
Sbjct: 249 ESGKLAGFGTDVLNNE 264

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  125 bits (316), Expect = 2e-32
 Identities = 93/288 (32%), Positives = 137/288 (47%), Gaps = 46/288 (15%)

Query: 47  KTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAALSR--AGGKAFSNMAVGYNN 99
           K  L  E++I  I D     IG     QLTE+    + AA  +  A G  F    +G N 
Sbjct: 39  KGALDEEELIEAIKDA--HFIGIRSRTQLTEE----VLAAAEKLVAIG-CFC---IGTNQ 88

Query: 100 VDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           VD++AA K GI V N P   T + AEL     +   R I E +     G   GW  +   
Sbjct: 89  VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRG---GWNKSAAG 145

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
              ++G+T+G++G G IG+  + ++ E   M + +YD+    +L       G     N  
Sbjct: 146 SFEVRGKTLGIVGYGHIGTQLS-VLAESLGMRVYFYDI--EDKL-----PLG-----NAR 192

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
           Q        S++E+L ++DV+SLH     +T ++I  E LA MK  AIL+N SRG V+D 
Sbjct: 193 Q------VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246

Query: 280 VALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHI 321
            AL + LK   +    +DVF        +P+  P L  + N I+ PHI
Sbjct: 247 DALADALKSGHLAGAAIDVFPVEPKSNGDPFESP-LRGLDNVILTPHI 293

Length = 409

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  122 bits (309), Expect = 4e-32
 Identities = 83/268 (30%), Positives = 124/268 (46%), Gaps = 40/268 (14%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GI V N  G  T + A+   +L LA A R+ +  + + AG    W
Sbjct: 74  ATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAG---RW 130

Query: 154 -------LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
                  L + F    L+G+T+G++G G +G A AR+  E F M ++             
Sbjct: 131 QQSSQFCLLD-FPIVELEGKTLGLLGHGELGGAVARL-AEAFGMRVLI------------ 176

Query: 207 VTAYGQFLKANGEQPVTWKRASSM--DEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                      G+ P    R   +  DE+L + D ++LH  L + T HLI    LA MK 
Sbjct: 177 -----------GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSE-MKNAIVVPHI 321
            A+L+N +RG ++DE AL + L+   +     DV   EP +   P L+  +   IV PH 
Sbjct: 226 GALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHS 285

Query: 322 ASASKWTREGMATLAALNVLGKIKGYPI 349
           A  S+  R+ +    A N      G P+
Sbjct: 286 AWGSREARQRIVGQLAENARAFFAGKPL 313

Length = 317

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  120 bits (302), Expect = 3e-31
 Identities = 75/246 (30%), Positives = 113/246 (45%), Gaps = 41/246 (16%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GIAV N  G  + T  E    +  A    ++    + R  L D W
Sbjct: 73  ATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMG---WYRDQLSDRW 129

Query: 154 LPNLFVGNL---------LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                             ++G T+GV G G +G+   R+  +   M ++Y +   A+   
Sbjct: 130 ATC---KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRL-AQALGMKVLYAEHKGASVCR 185

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
           +  T +                    +EVL++AD+++LH  L +TT +LIN E LA MK 
Sbjct: 186 EGYTPF--------------------EEVLKQADIVTLHCPLTETTQNLINAETLALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP-----GLSEMKNAIVVP 319
            A L+N  RGP++DE AL++ L+   +    LDV   EP  K          + N ++ P
Sbjct: 226 TAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITP 285

Query: 320 HIASAS 325
           HIA AS
Sbjct: 286 HIAWAS 291

Length = 314

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score =  118 bits (297), Expect = 3e-30
 Identities = 67/274 (24%), Positives = 120/274 (43%), Gaps = 35/274 (12%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETT 123
           DG+         E ++  L+  G K  +  + G++  D+  A KY + + N P    E+ 
Sbjct: 47  DGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESI 106

Query: 124 AELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
           AE   + ++   R   +    +R   +D  W P + +   +K   V VIG GRIG A A+
Sbjct: 107 AEFTVTQAINLVRHFNQIQTKVR--EHDFRWEPPI-LSRSIKDLKVAVIGTGRIGLAVAK 163

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +G+  +++ YD +   +   +V                     +++E +  AD+++L
Sbjct: 164 IFAKGYGSDVVAYDPFPNAKAATYVD-----------------YKDTIEEAVEGADIVTL 206

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H    K  ++L N +     KK A+ VNC+RG ++D  AL++ L    +    LD +E E
Sbjct: 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFE 266

Query: 303 PYMKPG--------------LSEMKNAIVVPHIA 322
             + P               L   ++ I+ PHIA
Sbjct: 267 RPLFPSDQRGQTINDPLLESLINREDVILTPHIA 300

Length = 332

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  117 bits (294), Expect = 5e-30
 Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 36/245 (14%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  N+D+  A + GI + N P    +   E A  + LA   ++  AD+ +R G+   W  
Sbjct: 72  GLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI---WDR 128

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
               G  L G+TVG+IG G +G A+A+ +  GF   +I YD Y+             F  
Sbjct: 129 EGNRGVELMGKTVGIIGYGNMGKAFAKRL-SGFGCKVIAYDKYK------------NFGD 175

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
           A  EQ        S++ + +EAD++SLH  L   T  ++NKE +++ KK    +N +RG 
Sbjct: 176 AYAEQ-------VSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGK 228

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPG----LSEMKNAIVVPHIASAS 325
           V+    LV+ LK   +    LDV E E       + +P     L +    I+ PHIA   
Sbjct: 229 VVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAG-- 286

Query: 326 KWTRE 330
            WT E
Sbjct: 287 -WTFE 290

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  117 bits (295), Expect = 5e-30
 Identities = 71/258 (27%), Positives = 104/258 (40%), Gaps = 39/258 (15%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + +      +  + + N  G+     AE      LA AR++              
Sbjct: 66  TSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERR--- 122

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-- 210
           W     V   L G+TV ++G G IG   AR   + F M                V     
Sbjct: 123 WQRRGPVR-ELAGKTVLIVGLGDIGREIARRA-KAFGMR---------------VIGVRR 165

Query: 211 -GQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAIL 268
            G+      ++  T      +DE+L EAD V++  P L   T  L N ER A MK  A+L
Sbjct: 166 SGRPAPPVVDEVYT---PDELDELLPEADYVVNALP-LTPETRGLFNAERFAAMKPGAVL 221

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIA 322
           +N  RG V+DE AL+E L+   +    LDVFE+EP     L        + N I+ PHI+
Sbjct: 222 INVGRGSVVDEDALIEALESGRIAGAALDVFEEEP-----LPADSPLWDLPNVIITPHIS 276

Query: 323 SASKWTREGMATLAALNV 340
             S    E +  +   N+
Sbjct: 277 GDSPSYPERVVEIFLENL 294

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score =  111 bits (280), Expect = 5e-28
 Identities = 86/300 (28%), Positives = 139/300 (46%), Gaps = 44/300 (14%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE---TLFAALSRAGGKAFSNMAVG 96
           VE+ T K+ +LS   +     D+     G  T  +G+    ++  L   G K  +    G
Sbjct: 26  VEVTTSKE-LLSSATV-----DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79

Query: 97  YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN 156
           ++  D++ A K+ I + N P    ET AE + S++L   RR  + +  ++A  +      
Sbjct: 80  FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE- 138

Query: 157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA 216
             +   +K  TV +IG GRIG+A A++   GF   +  YD Y    L+        FL  
Sbjct: 139 -IMSKPVKNMTVAIIGTGRIGAATAKIYA-GFGATITAYDAYPNKDLD--------FL-- 186

Query: 217 NGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276
                 T+K   S+ E +++AD+ISLH   +K +YHL +K     +KK AILVN +RG V
Sbjct: 187 ------TYK--DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238

Query: 277 IDEVALVEHLKQNPMFRVGLDVFEDE-PYM----------KPGLSEM---KNAIVVPHIA 322
           I+   L+  +    +    +D +E+E  Y              L E+   +  +V PHIA
Sbjct: 239 INTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIA 298

Length = 330

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  109 bits (274), Expect = 3e-27
 Identities = 74/230 (32%), Positives = 105/230 (45%), Gaps = 26/230 (11%)

Query: 114 NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           N  G   ET AE A +L LA  R++       RA  +D       +  LL+G TV ++GA
Sbjct: 78  NAAGAYAETVAEHALALLLAGLRQLPA---RARATTWDPAEE-DDLVTLLRGSTVAIVGA 133

Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           G IG A   ++   F   +I             V   G+     G        A  +DEV
Sbjct: 134 GGIGRALIPLLA-PFGAKVIA------------VNRSGR--PVEGADETV--PADRLDEV 176

Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
             +AD + L   L   T HL++   LA MK  A LVN +RGP++D  ALV+ L+   +  
Sbjct: 177 WPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAG 236

Query: 294 VGLDVFEDEPYMKPG---LSEMKNAIVVPHIASASKWTREGMATLAALNV 340
             LDV + EP   P    L  + NA++ PH+A+  +  R  +A   A NV
Sbjct: 237 AALDVTDPEPL--PDGHPLWSLPNALITPHVANTPEVIRPLLAERVAENV 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score =  106 bits (266), Expect = 1e-25
 Identities = 54/167 (32%), Positives = 78/167 (46%), Gaps = 25/167 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L  +T GV+GAG +G    R++  G    ++  D  +           G F+        
Sbjct: 114 LAERTYGVVGAGHVGGRLVRVL-RGLGWKVLVCDPPRQEAEGD-----GDFV-------- 159

Query: 223 TWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVID 278
                 S++ +L E DVISLH  L K     T HL+++  LA+++  A L+N SRG V+D
Sbjct: 160 ------SLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213

Query: 279 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
             AL E L         LDV+E EP +   L++    I  PHIA  S
Sbjct: 214 NQALREALLSGEDLDAVLDVWEGEPQIDLELAD-LCTIATPHIAGYS 259

Length = 381

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  104 bits (263), Expect = 1e-25
 Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 46/242 (19%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + + +    K GI + N  G+ +   AE      L   + + +A +  +      
Sbjct: 67  YSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKK--- 123

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI----------YYDLYQATR 202
           W  +  +  L  G+T+  +G G IG   A+ + + F M +I          Y+D      
Sbjct: 124 WKMDSSLLEL-YGKTILFLGTGSIGQEIAKRL-KAFGMKVIGVNTSGRDVEYFD------ 175

Query: 203 LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLAT 261
            + +            E          +DEVL+EAD V+++ P L + T+HL ++     
Sbjct: 176 -KCY---------PLEE----------LDEVLKEADIVVNVLP-LTEETHHLFDEAFFEQ 214

Query: 262 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVP 319
           MKK A+ +N  RGP +DE AL+E LK   +    LDVFE+EP  K  P L ++ N ++ P
Sbjct: 215 MKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSP-LWDLDNVLITP 273

Query: 320 HI 321
           HI
Sbjct: 274 HI 275

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  103 bits (259), Expect = 7e-25
 Identities = 70/236 (29%), Positives = 110/236 (46%), Gaps = 21/236 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGLYD 151
           VG   VDV+AA K+GI V   P   T    + AE+A  L L   R+  E    ++A    
Sbjct: 91  VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG 150

Query: 152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR---LEKFVT 208
              P   +G+ L G+TV ++G G IG   A+ +   F + L+      ATR     +   
Sbjct: 151 E--P---IGDTLFGKTVFILGYGAIGIELAKRL-RPFGVKLL------ATRRSWTSEPED 198

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                     +          + E   EAD++ L   L K T  ++N E L++MKK A+L
Sbjct: 199 GLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALL 258

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIA 322
           VN +RG ++D  A++  L+   +  + +DV   EP+  P   + +  N I+ PH+A
Sbjct: 259 VNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPF-DPDDPILKHPNVIITPHVA 313

Length = 347

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  100 bits (252), Expect = 6e-24
 Identities = 72/235 (30%), Positives = 112/235 (47%), Gaps = 23/235 (9%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AAN  GI V    G    + AE    + L   R  V   E    G   GW 
Sbjct: 93  IGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQAIEG---GWN 149

Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     L+G+TVG +GAGRIG    R + + F ++L+YYD ++             
Sbjct: 150 VADVVKRAYDLEGKTVGTVGAGRIGLRVLRRL-KPFDVHLLYYDRHR------------- 195

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L    E+ +   R + +++++ + DV++++  L   T  L NKE L+ MKK A LVN +
Sbjct: 196 -LPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTA 254

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+ E L+   +     DV+  +P  K  P    M N  + PHI+  +
Sbjct: 255 RGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHP-WRTMPNNAMTPHISGTT 308

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 67/241 (27%), Positives = 110/241 (45%), Gaps = 35/241 (14%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA+++GI V    G  + + AE    + LA  R    +      G   GW 
Sbjct: 123 IGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEG---GW- 178

Query: 155 PNLF-VGNL---LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            N+    +    L+G TVG++GAGRIG A  R + + F + L Y D ++           
Sbjct: 179 -NIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPFDVKLHYTDRHR----------- 225

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              L    EQ +      S D ++   DV+++H  L   T HL + + L+ MK+ + LVN
Sbjct: 226 ---LPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVN 282

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIASA 324
            +RG ++D  A+V  L+   +     DV+       D P+       M    + PHI+  
Sbjct: 283 TARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRT-----MPRNGMTPHISGT 337

Query: 325 S 325
           +
Sbjct: 338 T 338

Length = 385

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 95.3 bits (238), Expect = 3e-22
 Identities = 70/235 (29%), Positives = 99/235 (42%), Gaps = 37/235 (15%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQT 167
           G+ + N  GV   +TAELA +L LA+ R +         G ++    P+L        + 
Sbjct: 81  GVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSL------ADRR 134

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTW 224
           V ++G G IG A  R                   RL  F   VT   +  +  GEQ    
Sbjct: 135 VLIVGYGSIGRAIER-------------------RLAPFEVRVTRVARTARP-GEQVHGI 174

Query: 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
                +  +L EADV+ L   L   T  L++ E LA M   A+LVN +RGPV+D  ALV 
Sbjct: 175 ---DELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVA 231

Query: 285 HLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTREGMATLAA 337
            L    + R  LDV + EP + PG  L      ++ PH+  A+         L  
Sbjct: 232 ELASGRL-RAALDVTDPEP-LPPGHPLWSAPGVLITPHVGGATPAFLPRAYALVR 284

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 83.8 bits (207), Expect = 4e-18
 Identities = 59/262 (22%), Positives = 121/262 (46%), Gaps = 29/262 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K   +++ G +++DV+   +  + + +  G  + + AE A +L LA A+ I E +  M+ 
Sbjct: 51  KMIQSLSAGVDHIDVSGIPE-NVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKN 109

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G +    P      LL  +++G++G G IG   A ++ + F MN+  Y     TR     
Sbjct: 110 GNFKQ-SPT----KLLYNKSLGILGYGGIGRRVA-LLAKAFGMNIYAY-----TR----- 153

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
           +     + +   +P         +++++++D + +   L   T  +IN + L+  +K   
Sbjct: 154 SYVNDGISSIYMEP---------EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLA 204

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA-SK 326
           ++N +R  V+D+  ++  L+ +       DV+ +EP +    +   N I+ PH+A   S 
Sbjct: 205 IINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITE--TNPDNVILSPHVAGGMSG 262

Query: 327 WTREGMATLAALNVLGKIKGYP 348
              +    LA  N+    +G P
Sbjct: 263 EIMQPAVALAFENIKNFFEGKP 284

Length = 303

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 70/241 (29%), Positives = 109/241 (45%), Gaps = 41/241 (17%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI------VEADEFMRAG 148
           +G +++D+ AA   G+ V    G    + AE      L   R        V + E+  AG
Sbjct: 130 IGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAG 189

Query: 149 L----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRL 203
           +    YD           L+G+TVG +GAGRIG    + + + F  NL+Y+D L     L
Sbjct: 190 IAYRAYD-----------LEGKTVGTVGAGRIGRLLLQRL-KPFNCNLLYHDRLKMDPEL 237

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK   A               K    +D +L + DV+ ++  L + T  + NKER+A MK
Sbjct: 238 EKETGA---------------KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMK 282

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHI 321
           K  ++VN +RG ++D  A+ +      +   G DV+  +P  K  P    M N  + PHI
Sbjct: 283 KGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRY-MPNHAMTPHI 341

Query: 322 A 322
           +
Sbjct: 342 S 342

Length = 386

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 74.8 bits (185), Expect = 4e-15
 Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 37/215 (17%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           L +  AE   +  L   R +       R G+   W P          + VGV+G G +G+
Sbjct: 91  LAQGMAEYVLAAVLRLHRDMDRYAAQQRRGV---WKPLPQR--PAAERRVGVLGLGELGA 145

Query: 179 AYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237
           A AR +   GF                  V+ + +  K + E    +     +D  L + 
Sbjct: 146 AVARRLAALGFP-----------------VSGWSRSPK-DIEGVTCFHGEEGLDAFLAQT 187

Query: 238 DV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           D+ + L P+  +T   ++N E LA + + A L+N  RGP + E  L+  L    +    L
Sbjct: 188 DILVCLLPLTPETR-GILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVL 246

Query: 297 DVFEDEPYMKPGLSE------MKNAIVVPHIASAS 325
           DVFE EP     L             V PHIA+ +
Sbjct: 247 DVFEQEP-----LPADHPLWRHPRVTVTPHIAAIT 276

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 75.3 bits (185), Expect = 5e-15
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L  +TVG++G G +G      + E   +  +  D  +A R ++     G F      
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARL-EALGIKTLLCDPPRADRGDE-----GDF------ 158

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
                    S+DE+++EAD+++ H  L K     T HL +++ + ++K  AIL+N  RG 
Sbjct: 159 --------RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGA 210

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 333
           V+D  AL+  L +     V LDV+E EP +   L + K  I  PHIA    +T EG A
Sbjct: 211 VVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLK-KVDIGTPHIAG---YTLEGKA 264

Length = 378

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 72.0 bits (177), Expect = 4e-14
 Identities = 66/213 (30%), Positives = 89/213 (41%), Gaps = 35/213 (16%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWL-------PNLFVGNLLKGQTVGVIGAG 174
           T AE   +L LAA RR+ E  E  R   + G L       P   +  LL G  V + G G
Sbjct: 94  TVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLL-GARVLIWGFG 152

Query: 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMD 231
            IG   A ++                T L   VT   +   + GE+   PV       + 
Sbjct: 153 SIGQRLAPLL----------------TALGARVTGVAR---SAGERAGFPVV--AEDELP 191

Query: 232 EVLREADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290
           E+L E DV + + P    T  H ++ E LA + K A +VN  RG  +DE ALV  L+   
Sbjct: 192 ELLPETDVLVMILPATPSTA-HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGR 250

Query: 291 MFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIA 322
           +    LDV   EP      L +  N I+ PH A
Sbjct: 251 LGGAALDVTATEPLPASSPLWDAPNLILTPHAA 283

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 23/232 (9%)

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169
           + +    G+     AE      L  +   ++  E  +   +        V + + G+ VG
Sbjct: 79  VPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSV-GKRVG 137

Query: 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK------FVTAYGQFLKANGEQPVT 223
           ++G G IG   AR+      M +  Y        E        V   G     +G  P  
Sbjct: 138 ILGYGSIGRQTARLAQ-ALGMEVYAYTRSPRPTPESRKDDGYIVPGTGD---PDGSIPSA 193

Query: 224 W---KRASSMDEVLREA-D--VISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPV 276
           W      +S+ E LR+  D  V+SL P+   T  HL+  E    + K++  + N +RG +
Sbjct: 194 WFSGTDKASLHEFLRQDLDLLVVSL-PLTPATK-HLLGAEEFEILAKRKTFVSNIARGSL 251

Query: 277 IDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASK 326
           +D  ALV  L+   +    LDV + EP +     L    N I+ PH++  ++
Sbjct: 252 VDTDALVAALESGQIRGAALDVTDPEP-LPADHPLWSAPNVIITPHVSWQTQ 302

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 68.1 bits (167), Expect = 7e-13
 Identities = 65/246 (26%), Positives = 99/246 (40%), Gaps = 45/246 (18%)

Query: 117 GVLTETTAELAASLSLAAARRI----VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
           GV  E  AE   +  LAAA+R+    V+  E         W         L G T+G++G
Sbjct: 93  GVAAEAIAEFVLAAILAAAKRLPEIWVKGAEQ--------WRRE--PLGSLAGSTLGIVG 142

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG A AR  +    M ++      A R        G+     G +      A+ + E
Sbjct: 143 FGAIGQALARRAL-ALGMRVL------ALRRS------GRPSDVPGVE-----AAADLAE 184

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           +   +D + L   L   T HLIN + LA  K    L+N +RG ++D+ AL+E L    + 
Sbjct: 185 LFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRIS 244

Query: 293 RVGLDVFEDEP-------YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK 345
              LDV + EP       Y  P +       + PH ++ +   R  +A     N+     
Sbjct: 245 LASLDVTDPEPLPEGHPLYTHPRVR------LSPHTSAIAPDGRRNLADRFLENLARYRA 298

Query: 346 GYPIWG 351
           G P+  
Sbjct: 299 GQPLHD 304

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 66.5 bits (162), Expect = 3e-12
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 30/212 (14%)

Query: 80  AALSRAGGKAFSNMAVGYNNVDVNAAN-KYGIAVGNTPGVLTETT---AELAASLSLAAA 135
           A + + G +      +G ++ D+  A  + G+      GV        +  A  LS+   
Sbjct: 81  ALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFI 140

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
            R +E  +  R G              + G+TV V+GAG +G   A+M+  G    ++  
Sbjct: 141 ARFLEVQQPGRLGGAPD----------VAGKTVVVVGAGVVGKEAAQMLR-GLGAQVLIT 189

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH-PVLDKTTYHLI 254
           D+      +               + +  K    ++E L EADVI     +  K    L+
Sbjct: 190 DINVEALEQ--------------LEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILV 235

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            +E +  MK  +++VN + G V    AL   L
Sbjct: 236 PEELVEQMKPGSVIVNVAVGAVGCVQALHTQL 267

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 61/257 (23%), Positives = 84/257 (32%), Gaps = 56/257 (21%)

Query: 99  NVDVNAANKYGIAVGNT-----PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           NVD+ AA + GI V         GV+    +EL         R +              W
Sbjct: 85  NVDIAAARENGITVTGIRDYGDEGVVEYVISELI--------RLLHGFGGKQ-------W 129

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                    L G  VG+IG G  G   A  +   F  ++ YY   +    E     Y   
Sbjct: 130 KE---EPRELTGLKVGIIGLGTTGQMIADAL-SFFGADVYYYSRTRKPDAEAKGIRY--- 182

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
                  P        ++E+L+  DVI     L K    L+ +E    +    IL N S 
Sbjct: 183 ------LP--------LNELLKTVDVICTC--LPKNVI-LLGEEEFELLGDGKILFNTSL 225

Query: 274 GPVIDEVALVEHL---KQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
           GP  +  AL + L     N           DE      L    N I     A    WTR+
Sbjct: 226 GPSFEVEALKKWLKASGYNIFDCDTAGALGDEE-----LLRYPNVICTNKSAG---WTRQ 277

Query: 331 GMATLAALNVLGKIKGY 347
               L+   VL  ++ Y
Sbjct: 278 AFERLSQ-KVLANLEEY 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT 223
               V +IGAG +G   A++       N++ YD+ +            + ++  G   + 
Sbjct: 161 PPAKVLIIGAGVVGLGAAKIAK-KLGANVLVYDIKEEKL---------KGVETLGGSRLR 210

Query: 224 WKRASSMDEVLREADVI---SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
           + +   +++ L++ D++    L          LI +E +  MK+ A++V+ +
Sbjct: 211 YSQKEELEKELKQTDILINAILVD--GPRAPILIMEELVGPMKRGAVIVDLA 260

Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	386
PLN02306	386	hydroxypyruvate reductase	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	100.0
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.86
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.82
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.81
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.66
PLN02494	477	adenosylhomocysteinase	99.61
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.6
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.45
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.44
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.39
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.29
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.24
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.21
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.19
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.18
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.11
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.11
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.0
PLN02712	667	arogenate dehydrogenase	98.99
PRK05479	330	ketol-acid reductoisomerase; Provisional	98.98
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	98.97
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.97
PLN02256	304	arogenate dehydrogenase	98.96
PRK07417	279	arogenate dehydrogenase; Reviewed	98.89
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.88
PRK15059	292	tartronate semialdehyde reductase; Provisional	98.88
PRK08655	437	prephenate dehydrogenase; Provisional	98.86
PRK08818	370	prephenate dehydrogenase; Provisional	98.86
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.85
PRK06545	359	prephenate dehydrogenase; Validated	98.83
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.82
PLN02858	1378	fructose-bisphosphate aldolase	98.81
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.78
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.77
PLN02858	1378	fructose-bisphosphate aldolase	98.77
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.76
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.76
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.75
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.74
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.74
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.73
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.73
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.71
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.71
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.69
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.68
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.68
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.66
PLN02712	667	arogenate dehydrogenase	98.6
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.6
PRK05225	487	ketol-acid reductoisomerase; Validated	98.58
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.58
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.58
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.57
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.56
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.56
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.56
PLN02688	266	pyrroline-5-carboxylate reductase	98.56
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.53
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.53
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.49
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.48
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.46
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.45
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.45
PRK08507	275	prephenate dehydrogenase; Validated	98.45
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.44
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.42
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.42
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.42
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.4
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.39
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.38
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.37
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.35
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.34
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.33
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.33
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.32
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.31
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.3
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.28
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.22
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.21
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.2
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.2
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.18
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.17
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.17
PRK07680	273	late competence protein ComER; Validated	98.11
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.1
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.08
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.04
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.03
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.03
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.03
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PLN00203	519	glutamyl-tRNA reductase	97.99
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	97.98
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.98
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.96
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.96
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.95
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.93
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.92
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.91
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.9
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	97.9
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.87
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.86
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.86
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.86
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.85
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.83
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.82
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.82
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.82
PRK06141	314	ornithine cyclodeaminase; Validated	97.81
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.8
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.78
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.76
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	97.72
PRK07340	304	ornithine cyclodeaminase; Validated	97.72
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.68
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.66
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.66
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.66
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.62
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.61
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.59
PRK14982	340	acyl-ACP reductase; Provisional	97.59
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.59
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.59
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.58
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.58
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.57
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.57
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.57
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.56
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.56
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.53
PRK08618	325	ornithine cyclodeaminase; Validated	97.51
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.51
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.5
PRK06823	315	ornithine cyclodeaminase; Validated	97.48
PRK06046	326	alanine dehydrogenase; Validated	97.46
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.45
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.44
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.44
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.43
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.43
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.43
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.43
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.42
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.42
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.42
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.41
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.36
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.33
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.32
PRK08291	330	ectoine utilization protein EutC; Validated	97.3
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.29
PRK07589	346	ornithine cyclodeaminase; Validated	97.25
PRK06407	301	ornithine cyclodeaminase; Provisional	97.25
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.25
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.25
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.24
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	97.22
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.22
PRK06199	379	ornithine cyclodeaminase; Validated	97.19
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.18
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.18
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	97.16
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.15
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.14
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.14
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.1
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.09
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.09
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.08
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.06
PTZ00117	319	malate dehydrogenase; Provisional	97.05
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.05
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.04
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.02
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.98
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.92
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.83
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.76
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.76
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.75
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.71
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.69
PRK09414	445	glutamate dehydrogenase; Provisional	96.64
PLN02477	410	glutamate dehydrogenase	96.59
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.59
PRK06444	197	prephenate dehydrogenase; Provisional	96.58
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.52
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.51
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	96.51
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.51
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.49
PRK06223	307	malate dehydrogenase; Reviewed	96.49
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.49
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.46
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.45
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.44
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.43
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.38
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.35
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.34
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.33
PRK02102	331	ornithine carbamoyltransferase; Validated	96.32
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.31
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.31
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.28
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.25
PRK12862	763	malic enzyme; Reviewed	96.24
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.22
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.21
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.21
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.2
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.19
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.17
COG5322	351	Predicted dehydrogenase [General function predicti	96.17
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.14
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.11
PRK14031	444	glutamate dehydrogenase; Provisional	96.11
PRK12861	764	malic enzyme; Reviewed	96.06
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.05
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.04
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.02
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.02
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.02
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.01
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.98
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.96
PRK11579	346	putative oxidoreductase; Provisional	95.96
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.95
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.91
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	95.89
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.87
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	95.84
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	95.83
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.79
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.76
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.74
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.71
PRK14030	445	glutamate dehydrogenase; Provisional	95.65
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	95.63
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.63
PLN02342	348	ornithine carbamoyltransferase	95.61
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	95.59
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.55
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	95.5
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.47
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.47
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.44
PRK10637	457	cysG siroheme synthase; Provisional	95.43
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	95.4
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.36
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.34
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	95.22
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	95.21
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.21
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.21
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.19
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.17
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.16
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.13
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.01
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	94.91
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.9
PRK08306	296	dipicolinate synthase subunit A; Reviewed	94.89
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	94.89
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	94.87
PRK09496	453	trkA potassium transporter peripheral membrane com	94.86
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.76
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.75
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	94.75
PRK11891	429	aspartate carbamoyltransferase; Provisional	94.74
PRK09496	453	trkA potassium transporter peripheral membrane com	94.74
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	94.72
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	94.69
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.69
PRK06270	341	homoserine dehydrogenase; Provisional	94.68
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	94.67
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	94.61
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	94.5
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	94.48
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.43
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	94.42
PRK13529	563	malate dehydrogenase; Provisional	94.31
PRK10669	558	putative cation:proton antiport protein; Provision	94.29
PRK06153	393	hypothetical protein; Provisional	94.28
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.28
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.25
PRK03659	601	glutathione-regulated potassium-efflux system prot	94.23
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	94.22
PRK07806	248	short chain dehydrogenase; Provisional	94.21
PRK08300	302	acetaldehyde dehydrogenase; Validated	94.21
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	94.16
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.14
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	94.11
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.04
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.04
PRK05086	312	malate dehydrogenase; Provisional	93.96
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.93
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	93.93
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	93.92
PLN02602	350	lactate dehydrogenase	93.86
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	93.83
PLN02527	306	aspartate carbamoyltransferase	93.75
PTZ00317	559	NADP-dependent malic enzyme; Provisional	93.71
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.7
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	93.68
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	93.68
PRK10206	344	putative oxidoreductase; Provisional	93.67
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	93.63
PRK03562	621	glutathione-regulated potassium-efflux system prot	93.62
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	93.61
PRK08328	231	hypothetical protein; Provisional	93.61
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	93.61
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	93.59
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	93.56
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.55
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	93.48
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	93.44
COG0673	342	MviM Predicted dehydrogenases and related proteins	93.38
PRK12937	245	short chain dehydrogenase; Provisional	93.38
PRK14804	311	ornithine carbamoyltransferase; Provisional	93.36
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	93.31
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	93.29
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	93.16
PRK08223	287	hypothetical protein; Validated	93.13
PRK06701	290	short chain dehydrogenase; Provisional	93.1
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.08
PRK04148	134	hypothetical protein; Provisional	93.01
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.98
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	92.96
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	92.96
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.93
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	92.84
PRK08265	261	short chain dehydrogenase; Provisional	92.79
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	92.77
PRK06392	326	homoserine dehydrogenase; Provisional	92.71
PRK07576	264	short chain dehydrogenase; Provisional	92.69
PRK06349	426	homoserine dehydrogenase; Provisional	92.67
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	92.57
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	92.56
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	92.51
PRK08192	338	aspartate carbamoyltransferase; Provisional	92.49
PRK06128	300	oxidoreductase; Provisional	92.41
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	92.39
PRK15076	431	alpha-galactosidase; Provisional	92.37
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	92.37
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	92.36
PTZ00325	321	malate dehydrogenase; Provisional	92.35
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	92.33
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	92.29
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	92.22
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	92.21
PLN00106	323	malate dehydrogenase	92.19
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	92.14
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	92.11
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	92.06
PLN02586	360	probable cinnamyl alcohol dehydrogenase	92.03
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.96
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	91.89
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	91.86
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	91.8
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	91.76
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	91.75
PRK05442	326	malate dehydrogenase; Provisional	91.71
PLN00112	444	malate dehydrogenase (NADP); Provisional	91.63
PLN02214	342	cinnamoyl-CoA reductase	91.42
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	91.4
PRK07411	390	hypothetical protein; Validated	91.39
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	91.39
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.37
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	91.26
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	91.16
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	91.15
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	91.14
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	91.13
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	91.08
PRK07877	722	hypothetical protein; Provisional	91.0
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	91.0
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	90.97
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	90.93
PLN02948	577	phosphoribosylaminoimidazole carboxylase	90.92
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	90.87
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	90.83
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	90.78
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.77
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	90.67
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	90.63
PRK12742	237	oxidoreductase; Provisional	90.63
PRK06114	254	short chain dehydrogenase; Provisional	90.61
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.57
PLN02514	357	cinnamyl-alcohol dehydrogenase	90.49
PRK08324	681	short chain dehydrogenase; Validated	90.46
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	90.42
PLN02178	375	cinnamyl-alcohol dehydrogenase	90.35
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	90.23
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	90.21
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	90.17
COG2344	211	AT-rich DNA-binding protein [General function pred	90.16
PRK07904	253	short chain dehydrogenase; Provisional	90.09
PRK07523	255	gluconate 5-dehydrogenase; Provisional	90.08
PLN02383	344	aspartate semialdehyde dehydrogenase	90.06
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	90.03
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	89.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	89.85
PRK12747	252	short chain dehydrogenase; Provisional	89.82
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	89.81
PRK06172	253	short chain dehydrogenase; Provisional	89.74
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	89.72
PLN02740	381	Alcohol dehydrogenase-like	89.72
PRK07985	294	oxidoreductase; Provisional	89.71
PRK05866	293	short chain dehydrogenase; Provisional	89.55
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	89.54
PRK10537	393	voltage-gated potassium channel; Provisional	89.52
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	89.48
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	89.41
PLN03209	576	translocon at the inner envelope of chloroplast su	89.33
PRK06182	273	short chain dehydrogenase; Validated	89.21
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.15
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	89.07
PLN02427	386	UDP-apiose/xylose synthase	89.01
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	89.0
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	88.98
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	88.96
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	88.95
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	88.94
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	88.93
PRK07326	237	short chain dehydrogenase; Provisional	88.92
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	88.92
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	88.78
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	88.76
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	88.7
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	88.55
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	88.5
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	88.44
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	88.42
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	88.41
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	88.34
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	88.33
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	88.32
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	88.28
CHL00194	317	ycf39 Ycf39; Provisional	88.26
PRK05867	253	short chain dehydrogenase; Provisional	88.22
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	88.13
PTZ00188	506	adrenodoxin reductase; Provisional	88.06
PRK08589	272	short chain dehydrogenase; Validated	87.98
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	87.94
PRK06125	259	short chain dehydrogenase; Provisional	87.94
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	87.9
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	87.89
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	87.88
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	87.87
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	87.77
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	87.73
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	87.69
PRK06196	315	oxidoreductase; Provisional	87.66
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	87.65

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=5.2e-81  Score=620.78  Aligned_cols=386  Identities=94%  Similarity=1.428  Sum_probs=337.1

Q ss_pred             CCCceeEEeeCCCCCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHH
Q 016620            1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA   80 (386)
Q Consensus         1 ~~~~~~~~~~~~~~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~   80 (386)
                      |++++++++-+|+.+++|+++.+++++.+.+.|++.++++++....+..++.+++.+.+.+++|++++...+++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~   80 (386)
T PLN02306          1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS   80 (386)
T ss_pred             CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence            89999999999999999999998876435677877666776433333346888998887556999998877789999999


Q ss_pred             HhhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc
Q 016620           81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (386)
Q Consensus        81 ~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g  160 (386)
                      +++++++|+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|......|
T Consensus        81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g  160 (386)
T PLN02306         81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG  160 (386)
T ss_pred             hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence            99987779999999999999999999999999999999999999999999999999999999999999998886544567


Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      +++.|+||||||+|.||+.+|++++++|||+|++||++.......+...++..+...+.....+....+|+|++++||+|
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV  240 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI  240 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence            89999999999999999999999634999999999998654322111111111111111111122235899999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH  320 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPH  320 (386)
                      ++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||++|++.||+||||++||+++++||++|||++|||
T Consensus       241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH  320 (386)
T PLN02306        241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH  320 (386)
T ss_pred             EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence            99999999999999999999999999999999999999999999999999999999999999998788999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCCCCCCC
Q 016620          321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVSRL  386 (386)
Q Consensus       321 ia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (386)
                      +||+|.++++++.+.+++||.+|++|+++.|.||.++||+.+++.+|.++|++++.++||+|||.|
T Consensus       321 iag~T~e~~~~~~~~~~~ni~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (386)
T PLN02306        321 IASASKWTREGMATLAALNVLGKLKGYPVWGDPNRVEPFLNENAPPPAASPSIVNAKALGLPVSKL  386 (386)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHcCCCCcccccchhhcccccCCCCcCCcceechhhhCCcccCC
Confidence            999999999999999999999999999999999988899999999999999999999999999986

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=3.8e-69  Score=525.98  Aligned_cols=318  Identities=33%  Similarity=0.491  Sum_probs=276.3

Q ss_pred             CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      ++++|+++.+++++ ..+.|++. +++.... .....+.+++.+.+. ++|++++.. .++++++++++|+|  |+|++.
T Consensus         1 ~~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~~~~~~~-~ad~li~~~-~~~~~~~l~~~p~L--k~I~~~   73 (323)
T PRK15409          1 MKPSVILYKALPDD-LLQRLEEH-FTVTQVA-NLSPETVEQHAAAFA-EAEGLLGSG-EKVDAALLEKMPKL--RAASTI   73 (323)
T ss_pred             CCceEEEeCCCCHH-HHHHHHhc-CcEEEcC-CCCCCCHHHHHHHhc-CCeEEEEcC-CCCCHHHHhhCCCC--eEEEEC
Confidence            46789999888653 46677654 4554322 112236678888776 599998764 47999999999998  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~  173 (386)
                      |+|+|+||+++|+++||.|+|+|++++++||||++++||++.|++..+++.+++|.|..+......|.+|+|+|+||||+
T Consensus        74 g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~  153 (323)
T PRK15409         74 SVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGM  153 (323)
T ss_pred             ceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999999864432223578999999999999


Q ss_pred             ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620          174 GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (386)
Q Consensus       174 G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~  252 (386)
                      |+||+.+|+++ + +|||+|++||++.......          .     .+. ...+++|++++||+|++|+|+|++|++
T Consensus       154 G~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~----------~-----~~~-~~~~l~ell~~sDvv~lh~plt~~T~~  216 (323)
T PRK15409        154 GRIGMALAQRA-HFGFNMPILYNARRHHKEAEE----------R-----FNA-RYCDLDTLLQESDFVCIILPLTDETHH  216 (323)
T ss_pred             cHHHHHHHHHH-HhcCCCEEEEECCCCchhhHH----------h-----cCc-EecCHHHHHHhCCEEEEeCCCChHHhh
Confidence            99999999996 6 9999999999875332110          0     011 246999999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREG  331 (386)
Q Consensus       253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~~~~  331 (386)
                      +||++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++ ++|||++|||++|||+||.|.+++.+
T Consensus       217 li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~  296 (323)
T PRK15409        217 LFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYN  296 (323)
T ss_pred             ccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999986 46899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          332 MATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      +.+.+++||.+|++|+++.|.||.
T Consensus       297 ~~~~~~~ni~~~~~g~~~~~~vn~  320 (323)
T PRK15409        297 MAACAVDNLIDALQGKVEKNCVNP  320 (323)
T ss_pred             HHHHHHHHHHHHHcCCCCCcccCc
Confidence            999999999999999999999984

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-69  Score=527.16  Aligned_cols=312  Identities=36%  Similarity=0.505  Sum_probs=274.6

Q ss_pred             CCCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEE
Q 016620           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (386)
Q Consensus        13 ~~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~   92 (386)
                      +++++++++.++.++.| +.+.+. .+.++....  ..+.+++.+.+. ++|++++ ...+++++.++.+++|  |+|++
T Consensus         1 ~~~~~vl~~~~~~~~~~-~~l~~~-~~~~~~~~~--~~~~~~l~~~~~-~~d~~~~-~~~~v~~~~l~~~~~L--k~I~~   72 (324)
T COG0111           1 KMMIKVLVTDPLAPDAL-EELLAA-YDVEVPDGP--DLDEEELLEALA-DADALIV-SVTPVTEEVLAAAPNL--KAIGR   72 (324)
T ss_pred             CCcceeeccCccCHHHH-HHHHhc-ccccccccc--ccchHHHHhhcc-cCcEEEE-ecCCCCHHHHhhCCCc--eEEEE
Confidence            36788999998888665 444444 333332222  346667777776 5999888 7778999999999988  99999


Q ss_pred             ccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016620           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (386)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG  172 (386)
                      .|+|+|+||+++++++||.|+|+|++|+.+||||+++++|++.|+++.+++.+++|.|..   ..+.|.+|+||||||||
T Consensus        73 ~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG  149 (324)
T COG0111          73 AGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIG  149 (324)
T ss_pred             ccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999763   34567899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (386)
Q Consensus       173 ~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~  252 (386)
                      +|.||+.+|+++ ++|||+|++|||+.......               ..+.....+|++++++||||++|+|+|++|++
T Consensus       150 ~G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g  213 (324)
T COG0111         150 LGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRG  213 (324)
T ss_pred             CCHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhc
Confidence            999999999997 89999999999965542111               11233457899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  331 (386)
Q Consensus       253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~  331 (386)
                      |||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||+++ +|||++|||++|||+|+.|.++.++
T Consensus       214 ~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~  293 (324)
T COG0111         214 LINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQER  293 (324)
T ss_pred             ccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999987 6999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCC
Q 016620          332 MATLAALNVLGKIKGYPIWG  351 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g~~~~~  351 (386)
                      +...+++|+.+|++|+++.|
T Consensus       294 ~~~~~~~~i~~~l~g~~~~~  313 (324)
T COG0111         294 VAEIVAENIVRYLAGGPVVN  313 (324)
T ss_pred             HHHHHHHHHHHHHcCCCCCC
Confidence            99999999999999999655

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=2.3e-68  Score=518.45  Aligned_cols=318  Identities=39%  Similarity=0.536  Sum_probs=276.3

Q ss_pred             CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      +|++++++..++++ ..+.+... ++++........ .. ++.+... ++|++++....+++.+.++++|+|  |+|+..
T Consensus         1 mk~~~~~~~~~~~~-~~~~l~~~-~~~~~~~~~~~~-~~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~   73 (324)
T COG1052           1 MKIVVLSTRKLPPE-VLERLKEK-FEVERYEDDLTP-DT-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATR   73 (324)
T ss_pred             CCcEEEecCcCCHH-HHHHhhcc-EEEEEeccCCcc-ch-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEe
Confidence            35667888888875 35656544 565554433121 22 4555554 599999998889999999999987  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCC-CCCcccccccCCCeEEEEe
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIG  172 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w-~~~~~~g~~l~g~~vgIvG  172 (386)
                      |+||||||+++|+++||.|+|+|++++++|||+++++||++.|++..+++++++|.|..| ......|++++|||+||||
T Consensus        74 ~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG  153 (324)
T COG1052          74 SAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIG  153 (324)
T ss_pred             ccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEEC
Confidence            999999999999999999999999999999999999999999999999999999999755 2334567899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (386)
Q Consensus       173 ~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~  252 (386)
                      +|+||+++|+++ ++|||+|+||||++.+..++.               ..+ .+.+++|++++||+|++|||+|++|+|
T Consensus       154 ~GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~~---------------~~~-~y~~l~ell~~sDii~l~~Plt~~T~h  216 (324)
T COG1052         154 LGRIGQAVARRL-KGFGMKVLYYDRSPNPEAEKE---------------LGA-RYVDLDELLAESDIISLHCPLTPETRH  216 (324)
T ss_pred             CCHHHHHHHHHH-hcCCCEEEEECCCCChHHHhh---------------cCc-eeccHHHHHHhCCEEEEeCCCChHHhh
Confidence            999999999997 699999999999875322210               112 244699999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCCCCCCCC---eEEcCCCCCCcHHH
Q 016620          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKN---AIVVPHIASASKWT  328 (386)
Q Consensus       253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~n---vilTPHia~~t~~~  328 (386)
                      +||++.|++||+|++|||+|||++||++||++||++|+|.||++|||+.||.+ +++|++++|   |++|||+||+|.++
T Consensus       217 Lin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea  296 (324)
T COG1052         217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEA  296 (324)
T ss_pred             hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHH
Confidence            99999999999999999999999999999999999999999999999999995 578887777   99999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          329 REGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       329 ~~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      +.+|.+.+++|+..|++|++..+.||.
T Consensus       297 ~~~m~~~~~~nl~~~~~g~~~~~~v~~  323 (324)
T COG1052         297 RKAMAELALENLEAFFDGGVPPNEVNP  323 (324)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999999999999999874

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=7.4e-67  Score=512.64  Aligned_cols=319  Identities=43%  Similarity=0.645  Sum_probs=277.9

Q ss_pred             CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      |++||+++.++++ ...+.+++. +++... ......+.+++.+.+. ++|++++...+++++++++++|+|  |+|++.
T Consensus         1 ~~~kil~~~~~~~-~~~~~l~~~-~~~~~~-~~~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~   74 (333)
T PRK13243          1 MKPKVFITREIPE-NGIEMLEEH-FEVEVW-EDEREIPREVLLEKVR-DVDALVTMLSERIDCEVFEAAPRL--RIVANY   74 (333)
T ss_pred             CCceEEEECCCCH-HHHHHHhcC-ceEEEe-cCCCCCCHHHHHHHhC-CCcEEEEeCCCCCCHHHHhhCCCC--eEEEec
Confidence            4578888887765 345667654 355433 2222346778887776 599998876668999999999988  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCC----CCCCcccccccCCCeEE
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVG  169 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~----w~~~~~~g~~l~g~~vg  169 (386)
                      |+|+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..    |......|++|+|+|||
T Consensus        75 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvg  154 (333)
T PRK13243         75 AVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIG  154 (333)
T ss_pred             CccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999864    22222356899999999


Q ss_pred             EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh
Q 016620          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (386)
Q Consensus       170 IvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~  249 (386)
                      |||+|.||+.+|++| ++|||+|++|||+.......          ..+     . ...++++++++||+|++|+|+|++
T Consensus       155 IiG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~~~-----~-~~~~l~ell~~aDiV~l~lP~t~~  217 (333)
T PRK13243        155 IIGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK----------ELG-----A-EYRPLEELLRESDFVSLHVPLTKE  217 (333)
T ss_pred             EECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH----------HcC-----C-EecCHHHHHhhCCEEEEeCCCChH
Confidence            999999999999997 79999999999976432110          001     1 236899999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHH
Q 016620          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR  329 (386)
Q Consensus       250 t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~  329 (386)
                      |+++|+++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||++++|||++|||++|||+||+|.++.
T Consensus       218 T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~  297 (333)
T PRK13243        218 TYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAR  297 (333)
T ss_pred             HhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998789999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          330 EGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       330 ~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      .++.+.+++||.+|++|+++.|.||.
T Consensus       298 ~~~~~~~~~ni~~~~~g~~~~~~v~~  323 (333)
T PRK13243        298 EGMAELVAENLIAFKRGEVPPTLVNR  323 (333)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccCH
Confidence            99999999999999999999999974

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=2.1e-67  Score=544.58  Aligned_cols=335  Identities=35%  Similarity=0.512  Sum_probs=297.6

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcccc
Q 016620           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (386)
Q Consensus        17 ~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G   96 (386)
                      ||+++.++.++ ..+.+++.++++...  .  ..+++++.+.+. ++|+++++..+++++++++++++|  |+|++.|+|
T Consensus         1 ~vli~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G   72 (525)
T TIGR01327         1 KVLIADPISPD-GIDILEDVGVEVDVQ--T--GLSREELLEIIP-DYDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG   72 (525)
T ss_pred             CEEEeCCCCHH-HHHHHHhcCcEEEeC--C--CCCHHHHHHHhc-CCCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence            46777777653 467777666666532  2  236788888887 599999887778999999999988  999999999


Q ss_pred             ccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh
Q 016620           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (386)
Q Consensus        97 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~I  176 (386)
                      +|++|+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|..   ..+.|.+|+|+||||||+|.|
T Consensus        73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~~~~g~~l~gktvgIiG~G~I  149 (525)
T TIGR01327        73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDR---KAFMGTELYGKTLGVIGLGRI  149 (525)
T ss_pred             cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccc---cccCccccCCCEEEEECCCHH
Confidence            99999999999999999999999999999999999999999999999999998753   234578999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccH
Q 016620          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (386)
Q Consensus       177 G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~  256 (386)
                      |+.+|++| ++|||+|++|||+.......          .     .+.....+++|++++||+|++|+|+|++|+++|++
T Consensus       150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~-----~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~  213 (525)
T TIGR01327       150 GSIVAKRA-KAFGMKVLAYDPYISPERAE----------Q-----LGVELVDDLDELLARADFITVHTPLTPETRGLIGA  213 (525)
T ss_pred             HHHHHHHH-HhCCCEEEEECCCCChhHHH----------h-----cCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence            99999997 79999999999864321110          0     11222358999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHHHHH
Q 016620          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLA  336 (386)
Q Consensus       257 ~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~  336 (386)
                      +.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++++|||++|||++|||+||.|.++++++...+
T Consensus       214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~  293 (525)
T TIGR01327       214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQENVATQV  293 (525)
T ss_pred             HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999877899999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCC
Q 016620          337 ALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGL  381 (386)
Q Consensus       337 ~~ni~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (386)
                      ++|+.+|++|+++.|.||.  |.++++ .++.++||+.|++++|+
T Consensus       294 ~~ni~~~~~g~~~~~~vn~--~~~~~~-~~~~~~~~~~la~riG~  335 (525)
T TIGR01327       294 AEQVLDALKGLPVPNAVNA--PGIDAD-VMEKLKPYLDLAEKLGK  335 (525)
T ss_pred             HHHHHHHHcCCCCCceeeC--CCCCch-hhhhhhhHHHHHHHHHH
Confidence            9999999999999999988  999996 89999999999999986

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-66  Score=507.51  Aligned_cols=294  Identities=29%  Similarity=0.350  Sum_probs=258.2

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHhhCC
Q 016620           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG  109 (386)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~g  109 (386)
                      .+.+++...+++...    ..+.+++.+.+. ++|+++++ ..++++++++++++|  |+|++.|+|+|++|+++++++|
T Consensus        18 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g   89 (317)
T PRK06487         18 LSPLEQAFDELQLHD----ATTPEQVAERLR-GAQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG   89 (317)
T ss_pred             hhHHHhhCCeEEEec----CCCHHHHHHHhC-CCeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence            455655544554432    225678888876 59988876 457899999999988  9999999999999999999999


Q ss_pred             cEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCC---cccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620          110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (386)
Q Consensus       110 I~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~---~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~  186 (386)
                      |.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|...   .+.+++|.|+||||||+|.||+.+|+++ +
T Consensus        90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~  168 (317)
T PRK06487         90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E  168 (317)
T ss_pred             CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence            99999999999999999999999999999999999999998755321   1235789999999999999999999997 7


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCc
Q 016620          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (386)
Q Consensus       187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~ga  266 (386)
                      +|||+|++||++....                     .....+|+|++++||+|++|+|+|++|+++||++.|++||+|+
T Consensus       169 ~fgm~V~~~~~~~~~~---------------------~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga  227 (317)
T PRK06487        169 AFGMRVLIGQLPGRPA---------------------RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA  227 (317)
T ss_pred             hCCCEEEEECCCCCcc---------------------cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence            9999999999864220                     0123589999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCC--CCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 016620          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSE--MKNAIVVPHIASASKWTREGMATLAALNVLGK  343 (386)
Q Consensus       267 ilIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~--~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~  343 (386)
                      +|||+|||++||++||++||++|+|.||+||||++||++. +|||+  +|||++|||+||+|.++++++...+++||.+|
T Consensus       228 ~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~  307 (317)
T PRK06487        228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAF  307 (317)
T ss_pred             EEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999975 68995  89999999999999999999999999999999


Q ss_pred             HcCCCCCCCCC
Q 016620          344 IKGYPIWGNPN  354 (386)
Q Consensus       344 ~~g~~~~~~v~  354 (386)
                      ++|+|+ +.||
T Consensus       308 ~~g~~~-~~v~  317 (317)
T PRK06487        308 FAGKPL-RVVS  317 (317)
T ss_pred             HcCCCC-cCCC
Confidence            999876 4444

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=2.3e-66  Score=504.68  Aligned_cols=301  Identities=29%  Similarity=0.421  Sum_probs=258.5

Q ss_pred             EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcc
Q 016620           17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (386)
Q Consensus        17 ~vlvt~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~   94 (386)
                      |+++..+  +++. ..+.+++.+ ++....  .  .+.+++.+.+. ++|+++++ ..++++++++++|+|  |+|++.|
T Consensus         2 ki~~~~~~~~~~~-~~~~l~~~~-~~~~~~--~--~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~   71 (311)
T PRK08410          2 KIVILDAKTLGDK-DLSVFEEFG-DFQIYP--T--TSPEEVIERIK-DANIIITN-KVVIDKEVLSQLPNL--KLICITA   71 (311)
T ss_pred             eEEEEecCCCChh-hHHHHhhCc-eEEEeC--C--CCHHHHHHHhC-CCCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence            4544433  4433 356676653 444322  1  25678877776 59998876 557999999999988  9999999


Q ss_pred             ccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCc---ccccccCCCeEEEE
Q 016620           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI  171 (386)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~---~~g~~l~g~~vgIv  171 (386)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..+....   ..+++|+|+|||||
T Consensus        72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi  151 (311)
T PRK08410         72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII  151 (311)
T ss_pred             cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999986432111   12478999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhh
Q 016620          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (386)
Q Consensus       172 G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~  251 (386)
                      |+|+||+.+|+++ ++|||+|++|||+.....                  ..+ ...+++|++++||+|++|+|+|++|+
T Consensus       152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~~------------------~~~-~~~~l~ell~~sDvv~lh~Plt~~T~  211 (311)
T PRK08410        152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNKN------------------EEY-ERVSLEELLKTSDIISIHAPLNEKTK  211 (311)
T ss_pred             CCCHHHHHHHHHH-hhcCCEEEEECCCccccc------------------cCc-eeecHHHHhhcCCEEEEeCCCCchhh
Confidence            9999999999997 799999999999643210                  011 24689999999999999999999999


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCC---CCeEEcCCCCCCcHH
Q 016620          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM---KNAIVVPHIASASKW  327 (386)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~---~nvilTPHia~~t~~  327 (386)
                      ++||++.|++||+|++|||+|||++||++||++||++|+|. |+||||++||++. +|||++   |||++|||+||+|.+
T Consensus       212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e  290 (311)
T PRK08410        212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE  290 (311)
T ss_pred             cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHH
Confidence            99999999999999999999999999999999999999999 9999999999975 689986   899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHcCCC
Q 016620          328 TREGMATLAALNVLGKIKGYP  348 (386)
Q Consensus       328 ~~~~~~~~~~~ni~~~~~g~~  348 (386)
                      +.+++.+.+++||.+|++|++
T Consensus       291 ~~~~~~~~~~~nl~~~~~g~~  311 (311)
T PRK08410        291 ARKTLIEKVKENIKDFLEGGK  311 (311)
T ss_pred             HHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999874

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.3e-66  Score=538.90  Aligned_cols=335  Identities=33%  Similarity=0.491  Sum_probs=296.5

Q ss_pred             cEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcc
Q 016620           16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (386)
Q Consensus        16 ~~vlvt~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~   94 (386)
                      |||+++.++.+. ..+.|++. ++++..  ..  ..+.+++.+.+. ++|+++++..+++++++++++|+|  |+|++.|
T Consensus         1 m~ili~~~~~~~-~~~~l~~~~~~~v~~--~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (526)
T PRK13581          1 MKVLVSDPISPA-GLEILKDAPGVEVDV--KT--GLDKEELLEIIG-DYDALIVRSATKVTAEVLEAAKNL--KVIGRAG   72 (526)
T ss_pred             CeEEEeCCCCHH-HHHHHhccCCeEEEe--CC--CCCHHHHHHHhc-CCCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence            477888777653 35667665 344432  22  236788888877 599999887778999999999988  9999999


Q ss_pred             ccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 016620           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (386)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G  174 (386)
                      +|+|++|+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|..+   .+.|.+|.|+||||||+|
T Consensus        73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G  149 (526)
T PRK13581         73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIGLG  149 (526)
T ss_pred             cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999998542   245789999999999999


Q ss_pred             hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcc
Q 016620          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (386)
Q Consensus       175 ~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li  254 (386)
                      .||+.+|+++ ++|||+|++|||+.......          ..     +.. ..+++|++++||+|++|+|+|++|+++|
T Consensus       150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~-----g~~-~~~l~ell~~aDiV~l~lP~t~~t~~li  212 (526)
T PRK13581        150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA----------QL-----GVE-LVSLDELLARADFITLHTPLTPETRGLI  212 (526)
T ss_pred             HHHHHHHHHH-HhCCCEEEEECCCCChhHHH----------hc-----CCE-EEcHHHHHhhCCEEEEccCCChHhhcCc
Confidence            9999999997 79999999999875321110          01     122 2389999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHHH
Q 016620          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT  334 (386)
Q Consensus       255 ~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~  334 (386)
                      +++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++++|||++|||++|||+|+.|.++++++.+
T Consensus       213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~~~~  292 (526)
T PRK13581        213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQENVAI  292 (526)
T ss_pred             CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCC
Q 016620          335 LAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGL  381 (386)
Q Consensus       335 ~~~~ni~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (386)
                      .+++|+.+|++|+++.|.||.  |.+.++ .++.++||+.+++++|+
T Consensus       293 ~~~~ni~~~~~g~~~~~~vn~--~~~~~~-~~~~~~~~~~la~riG~  336 (526)
T PRK13581        293 QVAEQVIDALRGGPVPNAVNL--PSITAE-EAEKLKPYLDLAEKLGS  336 (526)
T ss_pred             HHHHHHHHHHcCCCcCceeeC--CCCchh-hhHHhHHHHHHHHHHHH
Confidence            999999999999999999987  899886 99999999999999986

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=5.5e-66  Score=518.55  Aligned_cols=316  Identities=27%  Similarity=0.353  Sum_probs=279.5

Q ss_pred             CCCCCcEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcE
Q 016620           11 NPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA   89 (386)
Q Consensus        11 ~~~~~~~vlvt~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~   89 (386)
                      .|.++||++++.+++++ ..+.+++.++ ++....   ...+.+++.+.+. ++|++++...+++++++++++++|  |+
T Consensus         6 ~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~-~~d~l~~~~~~~~~~~~l~~~~~L--k~   78 (409)
T PRK11790          6 LPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIK-DAHFIGIRSRTQLTEEVLAAAEKL--VA   78 (409)
T ss_pred             CCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcC-CCCEEEEeCCCCCCHHHHhhCCCC--eE
Confidence            46678999998877653 4577777666 665432   2347788887776 599988776678999999999988  99


Q ss_pred             EEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016620           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (386)
Q Consensus        90 i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vg  169 (386)
                      |++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..+   .+.|.+|.|+|||
T Consensus        79 I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~---~~~~~~L~gktvG  155 (409)
T PRK11790         79 IGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKS---AAGSFEVRGKTLG  155 (409)
T ss_pred             EEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCccccc---ccCcccCCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999988642   2356899999999


Q ss_pred             EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh
Q 016620          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (386)
Q Consensus       170 IvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~  249 (386)
                      |||+|+||+.+|+++ ++|||+|++||++....                ..  ......+++|++++||+|++|+|+|++
T Consensus       156 IiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~----------------~~--~~~~~~~l~ell~~sDiVslh~Plt~~  216 (409)
T PRK11790        156 IVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLP----------------LG--NARQVGSLEELLAQSDVVSLHVPETPS  216 (409)
T ss_pred             EECCCHHHHHHHHHH-HHCCCEEEEECCCcccc----------------cC--CceecCCHHHHHhhCCEEEEcCCCChH
Confidence            999999999999997 79999999999864321                00  122346899999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-----CCCCCCCCeEEcCCCCCC
Q 016620          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIASA  324 (386)
Q Consensus       250 t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-----~~L~~~~nvilTPHia~~  324 (386)
                      |+++||++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++.     +|||++|||++|||+||+
T Consensus       217 T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~  296 (409)
T PRK11790        217 TKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGS  296 (409)
T ss_pred             HhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCC
Confidence            999999999999999999999999999999999999999999999999999999864     489999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          325 SKWTREGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       325 t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      |.++.+++.+.+++|+.+|++|+++.+.||.
T Consensus       297 t~ea~~~~~~~~~~nl~~~~~~~~~~~~vn~  327 (409)
T PRK11790        297 TQEAQENIGLEVAGKLVKYSDNGSTLSAVNF  327 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCcCcceec
Confidence            9999999999999999999999999999985

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=9.3e-66  Score=484.54  Aligned_cols=336  Identities=33%  Similarity=0.473  Sum_probs=303.3

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcccc
Q 016620           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (386)
Q Consensus        17 ~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G   96 (386)
                      +||++.++.... ++.|++.+.++++...    ++.||+...+. ++|++++++.++++++.|+.... ++|+|.+.|+|
T Consensus         8 ~il~~e~~~~~~-~~~l~~~g~~v~~~~~----~~~eel~~~i~-~~~aviVrs~tkvtadvl~aa~~-~lkvVgrag~G   80 (406)
T KOG0068|consen    8 KILVAESLDQAC-IEILKDNGYQVEFKKN----LSLEELIEKIK-DCDALIVRSKTKVTADVLEAAAG-GLKVVGRAGIG   80 (406)
T ss_pred             eEEEecccchHH-HHHHHhcCceEEEecc----CCHHHHHHHhc-cCCEEEEEeCCeecHHHHHhhcC-CeEEEEecccC
Confidence            699999998754 7899999888875432    47789999887 59999999999999999996332 56999999999


Q ss_pred             ccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh
Q 016620           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (386)
Q Consensus        97 ~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~I  176 (386)
                      +||+|++++.++||.|.|+|.+|+.++||+++++++++.|++.++...+++|.|.   ...+.|.+++|||+||+|+|+|
T Consensus        81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wn---r~~~~G~el~GKTLgvlG~GrI  157 (406)
T KOG0068|consen   81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWN---RVKYLGWELRGKTLGVLGLGRI  157 (406)
T ss_pred             ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCcee---ecceeeeEEeccEEEEeecccc
Confidence            9999999999999999999999999999999999999999999999999999864   4567889999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccH
Q 016620          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (386)
Q Consensus       177 G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~  256 (386)
                      |+.+|+++ +++||+|++||+........          ..|     . ...+++|++..||||++|+|+||+|.+++|.
T Consensus       158 GseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a~g-----v-q~vsl~Eil~~ADFitlH~PLtP~T~~lin~  220 (406)
T KOG0068|consen  158 GSEVAVRA-KAMGMHVIGYDPITPMALAE----------AFG-----V-QLVSLEEILPKADFITLHVPLTPSTEKLLND  220 (406)
T ss_pred             hHHHHHHH-HhcCceEEeecCCCchHHHH----------hcc-----c-eeeeHHHHHhhcCEEEEccCCCcchhhccCH
Confidence            99999996 89999999999987553211          111     1 2479999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC---CCCCCCCCCeEEcCCCCCCcHHHHHHHH
Q 016620          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM---KPGLSEMKNAIVVPHIASASKWTREGMA  333 (386)
Q Consensus       257 ~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~---~~~L~~~~nvilTPHia~~t~~~~~~~~  333 (386)
                      +.|++||+|..+||++||++||++||++||++|+++|||+|||++||..   ...|.++|||++|||+|+.|.|+..+++
T Consensus       221 ~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~ia  300 (406)
T KOG0068|consen  221 ETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIA  300 (406)
T ss_pred             HHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999986   4589999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCCCC
Q 016620          334 TLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPV  383 (386)
Q Consensus       334 ~~~~~ni~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (386)
                      ..+++++.+|++| ...+.||-  |-++.. +.+-.+||+.+.|.||+-+
T Consensus       301 ievaea~~~~~~~-~~~g~Vna--~~v~~~-~l~~~~~~~~~a~~l~r~~  346 (406)
T KOG0068|consen  301 IEVAEAVSDYING-NSAGSVNA--PEVALE-SLTELKPNIVLAEKLGRLV  346 (406)
T ss_pred             HHHHHHHHHHhcc-Cccceech--hhhhhh-hhhccCchhHHHHHHhhhh
Confidence            9999999999999 88899987  777775 8889999999999999854

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.9e-65  Score=496.46  Aligned_cols=274  Identities=30%  Similarity=0.381  Sum_probs=246.5

Q ss_pred             CCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHH
Q 016620           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS  129 (386)
Q Consensus        50 ~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~  129 (386)
                      .+++++.+.+. ++|++++. ..+++++.++++++|  |+|++.|+|+|+||+++++++||.|+|+||+++.+||||+++
T Consensus        33 ~~~~~~~~~~~-~~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~  108 (314)
T PRK06932         33 TSAEQTIERAK-DADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG  108 (314)
T ss_pred             CChHHHHHHhC-CCcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence            36788888876 59988774 457899999999988  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchHHHHHHHHcCccCCCCCC---cccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH
Q 016620          130 LSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (386)
Q Consensus       130 ~~L~~~R~~~~~~~~~~~~~~~~w~~~---~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~  206 (386)
                      +||++.|++..+++.+++|.|..+...   ...+++|+|+||||||+|.||+.+|+++ ++|||+|++||++.....   
T Consensus       109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~~---  184 (314)
T PRK06932        109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASVC---  184 (314)
T ss_pred             HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCccccc---
Confidence            999999999999999999998643211   1234689999999999999999999997 799999999997532100   


Q ss_pred             HhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (386)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL  286 (386)
                                       .....+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||
T Consensus       185 -----------------~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL  247 (314)
T PRK06932        185 -----------------REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL  247 (314)
T ss_pred             -----------------ccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence                             012468999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcceEEeeccCCCCCCC-CCCC----CCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 016620          287 KQNPMFRVGLDVFEDEPYMK-PGLS----EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYP  348 (386)
Q Consensus       287 ~~g~i~gaalDV~~~EP~~~-~~L~----~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~  348 (386)
                      ++|+|.||+||||++||++. +|||    ++|||++|||+||+|.++++++.+.+++||.+|++|++
T Consensus       248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~  314 (314)
T PRK06932        248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK  314 (314)
T ss_pred             HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999864 6888    59999999999999999999999999999999999874

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=6.1e-64  Score=497.45  Aligned_cols=306  Identities=24%  Similarity=0.267  Sum_probs=268.5

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCcEEEEccccccccChhHHhh
Q 016620           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK  107 (386)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~--~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~  107 (386)
                      .+.|++.++++.+...  ...+.+++.+.+. ++|++++..  ..+++++.++++++|  |+|++.|+|+|+||++++++
T Consensus        61 ~~~l~~~g~e~~~~~~--~~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~  135 (385)
T PRK07574         61 RKFLEERGHELVVTSD--KDGPDSDFEKELP-DADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASE  135 (385)
T ss_pred             HHHHHhcCcEEEEeCC--CCCCHHHHHHHcC-CCeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHH
Confidence            3567888888766432  2346788887776 599998853  357899999999988  99999999999999999999


Q ss_pred             CCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 016620          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (386)
Q Consensus       108 ~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~  187 (386)
                      +||.|+|++++++.+||||++++||++.|++..+++++++|.|..+. ....+++|+|++|||||+|.||+.+|++| ++
T Consensus       136 ~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~-~~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~  213 (385)
T PRK07574        136 HGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIAD-CVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KP  213 (385)
T ss_pred             CCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccc-ccccceecCCCEEEEECCCHHHHHHHHHH-Hh
Confidence            99999999999999999999999999999999999999999986432 11246789999999999999999999997 79


Q ss_pred             CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcE
Q 016620          188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI  267 (386)
Q Consensus       188 fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gai  267 (386)
                      |||+|++|||+.......         ..     .+.....+++|++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus       214 fG~~V~~~dr~~~~~~~~---------~~-----~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~  279 (385)
T PRK07574        214 FDVKLHYTDRHRLPEEVE---------QE-----LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSY  279 (385)
T ss_pred             CCCEEEEECCCCCchhhH---------hh-----cCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcE
Confidence            999999999976321100         00     1122346899999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 016620          268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG  346 (386)
Q Consensus       268 lIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g  346 (386)
                      |||+|||++||++||++||++|+|.||++|||++||++. +|||++|||++|||+||.|.++++++.+.+++||++|++|
T Consensus       280 lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G  359 (385)
T PRK07574        280 LVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEG  359 (385)
T ss_pred             EEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999975 6999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q 016620          347 YPIWGNPNQV  356 (386)
Q Consensus       347 ~~~~~~v~~~  356 (386)
                      +++.|..+-+
T Consensus       360 ~~~~~~~~~~  369 (385)
T PRK07574        360 RPIRDEYLIV  369 (385)
T ss_pred             CCCCCCceEe
Confidence            9999977643

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=2.6e-63  Score=489.59  Aligned_cols=323  Identities=25%  Similarity=0.304  Sum_probs=268.2

Q ss_pred             eeCCCCCcEEEEeCCCCch--HH-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhcc
Q 016620            9 VWNPNGKYRVVSTKPMPGT--RW-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRA   85 (386)
Q Consensus         9 ~~~~~~~~~vlvt~~~~~~--~~-~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l   85 (386)
                      ++..++++|||++.+..+.  .| .+.+++.+ ...+ ..    .+.+++.+.+. ++|++++. ..++++++++.+++|
T Consensus        12 ~~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~-~~----~~~~e~~~~~~-~~d~~i~~-~~~~~~~~l~~~~~L   83 (347)
T PLN02928         12 HHSDMRPTRVLFCGPEFPASYSYTREYLQKYP-FIQV-DA----VAREDVPDVIA-NYDICVPK-MMRLDADIIARASQM   83 (347)
T ss_pred             cCCCCCCCEEEEECCCchhHHHHHHHHhhcCC-eeEe-cC----CCHHHHHHHhc-CCcEEEEC-CCCCCHHHHhcCCCc
Confidence            4567788899998776653  23 34454444 2222 21    35677777776 59988775 447899999999988


Q ss_pred             CCcEEEEccccccccChhHHhhCCcEEecCCCC---CchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccc
Q 016620           86 GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL  162 (386)
Q Consensus        86 ~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~---~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~  162 (386)
                        |+|++.|+|+|++|++++.++||.|+|+|++   ++.+||||+++++|+++|++..+++.+++|.|..     ..+.+
T Consensus        84 --k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~  156 (347)
T PLN02928         84 --KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDT  156 (347)
T ss_pred             --eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccC
Confidence              9999999999999999999999999999986   7899999999999999999999999999997642     24578


Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh-hhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      |+|+||||||+|.||+.+|++| ++|||+|++|||+.......... +. .......   .......+++|++++||+|+
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~L~ell~~aDiVv  231 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGLL-IPNGDVDDLV---DEKGGHEDIYEFAGEADIVV  231 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhhc-cccccccccc---cccCcccCHHHHHhhCCEEE
Confidence            9999999999999999999997 79999999999974321110000 00 0000000   00113568999999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPH  320 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPH  320 (386)
                      +|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|.||+||||++||++. +|||++|||++|||
T Consensus       232 l~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPH  311 (347)
T PLN02928        232 LCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPH  311 (347)
T ss_pred             ECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCc
Confidence            99999999999999999999999999999999999999999999999999999999999999864 69999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Q 016620          321 IASASKWTREGMATLAALNVLGKIKGYPIWG  351 (386)
Q Consensus       321 ia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~  351 (386)
                      +||+|.++++++.+.+++|+.+|++|+|+.|
T Consensus       312 ia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~  342 (347)
T PLN02928        312 VAGVTEYSYRSMGKIVGDAALQLHAGRPLTG  342 (347)
T ss_pred             CCCChHHHHHHHHHHHHHHHHHHHCCCCCCc
Confidence            9999999999999999999999999998866

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-63  Score=495.13  Aligned_cols=301  Identities=23%  Similarity=0.242  Sum_probs=264.3

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCcEEEEccccccccChhHHhh
Q 016620           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK  107 (386)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~--~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~  107 (386)
                      .+.|++.++++.+....  ..+.+++.+.+. ++|++|+..  +.+++++.++++++|  |+|++.|+|+|+||+++|++
T Consensus        68 ~~~l~~~g~~~v~~~~~--~~~~~~~~~~l~-dadili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~~  142 (386)
T PLN03139         68 RDWLESQGHQYIVTDDK--EGPDCELEKHIP-DLHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAAA  142 (386)
T ss_pred             HHHHHhcCCeEEEeCCC--CCCHHHHHHHhC-CCeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHHH
Confidence            46678888888665433  346788888887 599998864  357999999999998  99999999999999999999


Q ss_pred             CCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 016620          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (386)
Q Consensus       108 ~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~  187 (386)
                      +||.|+|++|+++.+||||++++||++.|++..+++.+++|.|.. ......+++|.|+||||||+|+||+.+|++| ++
T Consensus       143 ~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~-~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~a  220 (386)
T PLN03139        143 AGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNV-AGIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KP  220 (386)
T ss_pred             CCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCcc-ccccCCCcCCCCCEEEEEeecHHHHHHHHHH-HH
Confidence            999999999999999999999999999999999999999998852 1112346799999999999999999999998 79


Q ss_pred             CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcE
Q 016620          188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI  267 (386)
Q Consensus       188 fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gai  267 (386)
                      |||+|++||++......         ...     .+.....+++|++++||+|++|+|+|++|+++||++.|++||+|++
T Consensus       221 fG~~V~~~d~~~~~~~~---------~~~-----~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~  286 (386)
T PLN03139        221 FNCNLLYHDRLKMDPEL---------EKE-----TGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVL  286 (386)
T ss_pred             CCCEEEEECCCCcchhh---------Hhh-----cCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeE
Confidence            99999999987532110         000     1122346899999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 016620          268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG  346 (386)
Q Consensus       268 lIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g  346 (386)
                      |||+|||++||++||++||++|+|.||++|||++||++. +|||++|||++|||+||.|.++++++.+.+++||.+|++|
T Consensus       287 lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G  366 (386)
T PLN03139        287 IVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKG  366 (386)
T ss_pred             EEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999975 6999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 016620          347 YPIWG  351 (386)
Q Consensus       347 ~~~~~  351 (386)
                      +++..
T Consensus       367 ~~~~~  371 (386)
T PLN03139        367 EDFPA  371 (386)
T ss_pred             CCCCC
Confidence            97554

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=3.2e-62  Score=478.81  Aligned_cols=313  Identities=27%  Similarity=0.416  Sum_probs=267.7

Q ss_pred             cEEEEeC--CCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           16 YRVVSTK--PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        16 ~~vlvt~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      |||++-.  +...+-..+.+++++.++..  ... .++.+. .+.+. ++|++++...+++++++++++++.++|+|++.
T Consensus         2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~--~~~-~~~~~~-~~~~~-~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~   76 (330)
T PRK12480          2 TKIMFFGTRDYEKEMALNWGKKNNVEVTT--SKE-LLSSAT-VDQLK-DYDGVTTMQFGKLENDVYPKLESYGIKQIAQR   76 (330)
T ss_pred             cEEEEEeCcHHHHHHHHHHHHhcCeEEEE--cCC-CCCHHH-HHHhC-CCCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence            7776633  33322234556666555443  222 355665 55555 59999987767899999999984455999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~  173 (386)
                      |+|+|+||+++|+++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|. |... ..+++|+|++|||||+
T Consensus        77 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~  154 (330)
T PRK12480         77 TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGT  154 (330)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999874 6432 3568999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhc
Q 016620          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (386)
Q Consensus       174 G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~l  253 (386)
                      |.||+++|++| ++||++|++||++...... +                 .....++++++++||+|++|+|++++|.++
T Consensus       155 G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~l  215 (330)
T PRK12480        155 GRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYHL  215 (330)
T ss_pred             CHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence            99999999997 7999999999998653211 0                 112358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------C----CCCCCCCCeEEcC
Q 016620          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVP  319 (386)
Q Consensus       254 i~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~----~~L~~~~nvilTP  319 (386)
                      ++++.|++||+|++|||+|||.+||++||++||++|++.||+||||++||+.          +    +|||++|||++||
T Consensus       216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  295 (330)
T PRK12480        216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP  295 (330)
T ss_pred             HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence            9999999999999999999999999999999999999999999999999962          1    2699999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016620          320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (386)
Q Consensus       320 Hia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  354 (386)
                      |+|++|.++++++.+.+++|+.+|++|++..+.+|
T Consensus       296 Hia~~t~~~~~~~~~~~~~n~~~~~~~~~~~~~~~  330 (330)
T PRK12480        296 HIAFFSDEAVQNLVEGGLNAALSVINTGTCETRLN  330 (330)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHhCCCCcccCC
Confidence            99999999999999999999999999999999887

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=1.6e-61  Score=474.97  Aligned_cols=317  Identities=24%  Similarity=0.378  Sum_probs=270.2

Q ss_pred             CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      ++++++++.+.+.. +++.+.+. +++++..... .++.+ ..+.+. ++|++++...++++++++++++++++|+|++.
T Consensus         2 ~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~~e-~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~   76 (332)
T PRK08605          2 TKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALTDD-NVEEVE-GFDGLSLSQQIPLSEAIYKLLNELGIKQIAQR   76 (332)
T ss_pred             cEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCCHH-HHHHhc-CCCEEEEecCCCCCHHHHHhhhhcCceEEEEc
Confidence            56777887776553 45554443 2343322221 23444 445665 59999887777899999999998667999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~  173 (386)
                      |+|+|++|+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|. |... ..|++|+|++|||||+
T Consensus        77 ~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG~  154 (332)
T PRK08605         77 SAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIGT  154 (332)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999884 6542 3568999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhc
Q 016620          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (386)
Q Consensus       174 G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~l  253 (386)
                      |.||+++|++|+++|||+|++||++.......            .     .....++++++++||+|++|+|++++|.++
T Consensus       155 G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvIvl~lP~t~~t~~l  217 (332)
T PRK08605        155 GRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT------------Y-----VDYKDTIEEAVEGADIVTLHMPATKYNHYL  217 (332)
T ss_pred             CHHHHHHHHHHHhcCCCEEEEECCCccHhHHh------------h-----ccccCCHHHHHHhCCEEEEeCCCCcchhhh
Confidence            99999999997458999999999876542111            0     112358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CC-C-----------CCCCCCCeEEcC
Q 016620          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK-P-----------GLSEMKNAIVVP  319 (386)
Q Consensus       254 i~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~-~-----------~L~~~~nvilTP  319 (386)
                      ++++.++.||+|++|||+|||.++|+++|+++|++|+|.||+||||++||.  +. +           +||++|||++||
T Consensus       218 i~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  297 (332)
T PRK08605        218 FNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTP  297 (332)
T ss_pred             cCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECC
Confidence            999999999999999999999999999999999999999999999999982  32 1           499999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016620          320 HIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (386)
Q Consensus       320 Hia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  354 (386)
                      |+|++|.++.+++...+++|+.+|++|++..+.||
T Consensus       298 Hia~~t~e~~~~~~~~~~~n~~~~~~g~~~~~~~~  332 (332)
T PRK08605        298 HIAFYTDAAVKNLIVDALDATLEVLQTGTTRLRVN  332 (332)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999999999999999887

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=8.8e-61  Score=460.74  Aligned_cols=300  Identities=38%  Similarity=0.553  Sum_probs=261.9

Q ss_pred             CCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-hccCCcEEEEccccccccChhHHhhCCcEEec
Q 016620           36 QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGN  114 (386)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l-~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n  114 (386)
                      .+.+.......+..++.+++.....+...++.+.....++.+.+.++ |++  |+|+++|+|+||||+++|++|||+|+|
T Consensus        35 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~V~n  112 (336)
T KOG0069|consen   35 QGYQLREEFLKEPKLIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIRVAN  112 (336)
T ss_pred             ccccceehhccccccchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCceEec
Confidence            33433333334444566666656554445555555567778888777 777  999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE
Q 016620          115 TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY  194 (386)
Q Consensus       115 ~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~  194 (386)
                      +|+.++.+|||++++++|.++|++..+++++++|.| .|......|..+.||||||+|+|+||+.+|++| ++|||.+.|
T Consensus       113 vp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~i~y  190 (336)
T KOG0069|consen  113 VPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCVILY  190 (336)
T ss_pred             cCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccceeee
Confidence            999999999999999999999999999999999999 788878888999999999999999999999998 789999999


Q ss_pred             EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      ++|+.......+  .|             .....+++|++.+||+|++|||+|++|+++||++.|.+||+|++|||++||
T Consensus       191 ~~r~~~~~~~~~--~~-------------~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG  255 (336)
T KOG0069|consen  191 HSRTQLPPEEAY--EY-------------YAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARG  255 (336)
T ss_pred             ecccCCchhhHH--Hh-------------cccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccc
Confidence            998765422110  00             112469999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016620          275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (386)
Q Consensus       275 ~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  354 (386)
                      .++|++++++||++|++.+|+||||++||.++++|++++|+++|||+|+.|.+++++|+..++.|+.+++.|+|+...++
T Consensus       256 ~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~~  335 (336)
T KOG0069|consen  256 AIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPVL  335 (336)
T ss_pred             ccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcCC
Confidence            99999999999999999999999999999777899999999999999999999999999999999999999999998775

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=2.3e-58  Score=448.12  Aligned_cols=303  Identities=18%  Similarity=0.218  Sum_probs=248.9

Q ss_pred             EEEE-eCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           17 RVVS-TKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        17 ~vlv-t~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      .+++ ......+.|.+.+++..+++++....+     ++    . .++|+++++..   +.+.++ .++|  |+|++.|+
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~-~~a~~~~~~~~---~~~~l~-~~~L--k~I~~~~a   65 (312)
T PRK15469          2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-----GD----N-DPADYALVWHP---PVEMLA-GRDL--KAVFALGA   65 (312)
T ss_pred             EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-----CC----C-ccCeEEEEeCC---ChHHhc-cCCc--eEEEEccc
Confidence            4443 344455558888888644444432211     11    1 25898887653   345664 4666  99999999


Q ss_pred             cccccChhH-----HhhCCcEEecCCC-CCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016620           96 GYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (386)
Q Consensus        96 G~d~id~~~-----~~~~gI~v~n~~~-~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vg  169 (386)
                      |+|++|...     +..+||.|+|+++ .++.+||||++++||++.|++..+...++++.|..+     .+.+++|+|||
T Consensus        66 G~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~tvg  140 (312)
T PRK15469         66 GVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFTIG  140 (312)
T ss_pred             ccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCEEE
Confidence            999998322     3458999999864 689999999999999999999999999999987532     23579999999


Q ss_pred             EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh
Q 016620          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (386)
Q Consensus       170 IvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~  249 (386)
                      |||+|.||+.+|++| ++|||+|++||++.....              +..  ......++++++++||+|++|+|+|++
T Consensus       141 IvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~~--~~~~~~~l~e~l~~aDvvv~~lPlt~~  203 (312)
T PRK15469        141 ILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GVQ--SFAGREELSAFLSQTRVLINLLPNTPE  203 (312)
T ss_pred             EECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cce--eecccccHHHHHhcCCEEEECCCCCHH
Confidence            999999999999997 799999999998654310              000  111246899999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHH
Q 016620          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWT  328 (386)
Q Consensus       250 t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~  328 (386)
                      |+++|+++.|++||+|++|||+|||++||++||++||++|++.||+||||++||++. +|||++|||++|||+||.|.+.
T Consensus       204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~  283 (312)
T PRK15469        204 TVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA  283 (312)
T ss_pred             HHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH
Confidence            999999999999999999999999999999999999999999999999999999975 6999999999999999999864


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCCCCcC
Q 016620          329 REGMATLAALNVLGKIKGYPIWGNPNQVEPF  359 (386)
Q Consensus       329 ~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~  359 (386)
                        ++...+.+|+++|++|+++.|.||.-++|
T Consensus       284 --~~~~~~~~n~~~~~~g~~~~~~V~~~~gY  312 (312)
T PRK15469        284 --EAVEYISRTIAQLEKGERVCGQVDRARGY  312 (312)
T ss_pred             --HHHHHHHHHHHHHHcCCCCcccCCcccCC
Confidence              67888999999999999999999976555

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=4.2e-57  Score=446.76  Aligned_cols=279  Identities=27%  Similarity=0.354  Sum_probs=240.5

Q ss_pred             cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      |||+++..++.  ..+.+++.+ ++....  ....+.+++    . ++|+++++..+++++++++ .+++  |+|++.++
T Consensus         1 mkIl~d~~~~~--~~~~~~~~~-ev~~~~--~~~~~~~~l----~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~   67 (378)
T PRK15438          1 MKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVAQL----A-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA   67 (378)
T ss_pred             CEEEEeCCcch--HHHHHhhcC-cEEEeC--CCCCCHHHh----C-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence            68888887763  246666554 555433  334465554    2 5999999877789999985 5766  99999999


Q ss_pred             cccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016620           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (386)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~  175 (386)
                      |+||||+++++++||.|+|+||+++.+||||+++++|++.|+.                     |.+|.|+||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~  126 (378)
T PRK15438         68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN  126 (378)
T ss_pred             cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence            9999999999999999999999999999999999999999951                     2479999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh----hh
Q 016620          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (386)
Q Consensus       176 IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~----t~  251 (386)
                      ||+.+|++| ++|||+|++|||.....               .   . .....++++++++||+|++|+|+|++    |+
T Consensus       127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~---~-~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~  186 (378)
T PRK15438        127 VGRRLQARL-EALGIKTLLCDPPRADR---------------G---D-EGDFRSLDELVQEADILTFHTPLFKDGPYKTL  186 (378)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc---------------c---c-ccccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence            999999997 79999999999753210               0   0 01246899999999999999999996    99


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (386)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  331 (386)
                      ++||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++||.++++|+..++ ++|||+||+|.++..+
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~-i~TPHiAg~s~e~~~~  265 (378)
T PRK15438        187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVD-IGTPHIAGYTLEGKAR  265 (378)
T ss_pred             cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCC-EECCccCcCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988788988665 9999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCC
Q 016620          332 MATLAALNVLGKIKGYPIW  350 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g~~~~  350 (386)
                      +...+++|+.+|+ |.+..
T Consensus       266 ~~~~~~~~l~~~~-~~~~~  283 (378)
T PRK15438        266 GTTQVFEAYSKFI-GHEQH  283 (378)
T ss_pred             HHHHHHHHHHHHH-cCccc
Confidence            9999999999998 55543

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.1e-56  Score=434.03  Aligned_cols=262  Identities=22%  Similarity=0.327  Sum_probs=227.3

Q ss_pred             CCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHH
Q 016620           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (386)
Q Consensus        62 ~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~  141 (386)
                      ++|+++....       ....++|  |+|++.|+|+|++|+++|+++||.++|. |+++.+||||++++||++.|++..+
T Consensus        34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~  103 (303)
T PRK06436         34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICEN  103 (303)
T ss_pred             CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHH
Confidence            4787754432       1224566  9999999999999999999998888775 7889999999999999999999999


Q ss_pred             HHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC
Q 016620          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (386)
Q Consensus       142 ~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (386)
                      ++.+++|.|..+     .+++|+|+||||||+|.||+++|+++ ++|||+|++|||+....               +.. 
T Consensus       104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~-  161 (303)
T PRK06436        104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS-  161 (303)
T ss_pred             HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc-
Confidence            999999987642     34789999999999999999999987 79999999999874320               110 


Q ss_pred             ccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (386)
Q Consensus       222 ~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~  301 (386)
                         ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|++.+|+||||++
T Consensus       162 ---~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~  238 (303)
T PRK06436        162 ---SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN  238 (303)
T ss_pred             ---cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence               11468999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCeEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCC
Q 016620          302 EPYMKPGLSEMKNAIVVPHIA-SASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNE  362 (386)
Q Consensus       302 EP~~~~~L~~~~nvilTPHia-~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~~~~  362 (386)
                      ||++++.  .+|||++|||++ +.|.++++++.+.+++||.+|++|++ .|.||.- +|+-.
T Consensus       239 EP~~~~~--~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~~-~y~~~  296 (303)
T PRK06436        239 EPIITET--NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRKE-EYIVR  296 (303)
T ss_pred             CCCCccC--CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEchH-Hheee
Confidence            9986543  689999999986 48899999999999999999999998 5888653 55443

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1e-56  Score=445.28  Aligned_cols=286  Identities=24%  Similarity=0.314  Sum_probs=245.3

Q ss_pred             cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      |||++..++|-.  .+.+++.+ ++....  ...++.+.+    . ++|+++++..+++++++++ .+++  |+|++.++
T Consensus         1 mkI~~d~~~p~~--~~~~~~~~-~v~~~~--~~~~~~~~l----~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~   67 (381)
T PRK00257          1 MKIVADENIPLL--DAFFAGFG-EIRRLP--GRAFDRAAV----R-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI   67 (381)
T ss_pred             CEEEEecCchhH--HHHHhhCC-cEEEcC--CcccCHHHh----C-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence            789998888632  35555544 554433  223344433    3 5999998877889999987 4666  99999999


Q ss_pred             cccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016620           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (386)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~  175 (386)
                      |+||||+++++++||.|+|+||+++.+||||+++++|++.|+                     .|.++.|+||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~  126 (381)
T PRK00257         68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH  126 (381)
T ss_pred             cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence            999999999999999999999999999999999999999884                     13579999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCCh----hhh
Q 016620          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY  251 (386)
Q Consensus       176 IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~----~t~  251 (386)
                      ||+.+|+++ ++|||+|++||+.....              .     ......+++|++++||+|++|+|+|+    .|+
T Consensus       127 IG~~va~~l-~a~G~~V~~~Dp~~~~~--------------~-----~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~  186 (381)
T PRK00257        127 VGGRLVRVL-RGLGWKVLVCDPPRQEA--------------E-----GDGDFVSLERILEECDVISLHTPLTKEGEHPTR  186 (381)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc--------------c-----cCccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence            999999997 79999999999854320              0     01124689999999999999999999    599


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (386)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  331 (386)
                      ++||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++||.++++||+. |+++|||+||+|.++..+
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~-nvi~TPHiAg~s~e~~~r  265 (381)
T PRK00257        187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADL-CTIATPHIAGYSLDGKAR  265 (381)
T ss_pred             ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhC-CEEEcCccccCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999887889985 999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCC
Q 016620          332 MATLAALNVLGKIKGYPIWGNPNQV  356 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g~~~~~~v~~~  356 (386)
                      +...+++|+.+|+.+.+-..-.+.+
T Consensus       266 ~~~~~~~nl~~~~~~~~~~~~~~~~  290 (381)
T PRK00257        266 GTAQIYQALCRFFGIPARVSLTDLL  290 (381)
T ss_pred             HHHHHHHHHHHHHcCCCccchhccC
Confidence            9999999999999998766655443

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=7.1e-47  Score=340.18  Aligned_cols=177  Identities=42%  Similarity=0.560  Sum_probs=152.0

Q ss_pred             HHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH
Q 016620          128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV  207 (386)
Q Consensus       128 l~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~  207 (386)
                      +++||++.|++..+++.++++.|  |......+++++|+||||||+|.||+.+|+++ ++|||+|++|||+....... .
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~-~   76 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGA-D   76 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHH-H
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhc-c
Confidence            68999999999999999999998  22333567899999999999999999999997 79999999999998764310 0


Q ss_pred             hhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                              .     . .....+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|+
T Consensus        77 --------~-----~-~~~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   77 --------E-----F-GVEYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             --------H-----T-TEEESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             --------c-----c-cceeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence                    0     0 1135799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCC
Q 016620          288 QNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIA  322 (386)
Q Consensus       288 ~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia  322 (386)
                      +|++.||+||||++||++. +|||++|||++|||+|
T Consensus       143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred             hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence            9999999999999999986 4999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=100.00  E-value=1.3e-32  Score=262.70  Aligned_cols=290  Identities=28%  Similarity=0.361  Sum_probs=247.5

Q ss_pred             CHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHH
Q 016620           51 SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL  130 (386)
Q Consensus        51 ~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~  130 (386)
                      +..|+.+.+-..+-+-+...+..++++-+++.+.+  +++.+.|.|+|++|+.++.+.||.|||.|+...+.+|+-++..
T Consensus        62 stqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~h  139 (435)
T KOG0067|consen   62 STQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCH  139 (435)
T ss_pred             chHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHH
Confidence            56677765554566666666777889999999988  9999999999999999999999999999999999999999999


Q ss_pred             HHHHHhchHHHHHHHHcCccCC-CCCC---cccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH
Q 016620          131 SLAAARRIVEADEFMRAGLYDG-WLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (386)
Q Consensus       131 ~L~~~R~~~~~~~~~~~~~~~~-w~~~---~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~  206 (386)
                      +|.++|+.....+.+++|.|.+ |...   ......++|.+.|++|+|.+|+.++.+ |++||..|+.||++..+-.+.+
T Consensus       140 Il~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~~  218 (435)
T KOG0067|consen  140 ILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDKS  218 (435)
T ss_pred             HHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhhh
Confidence            9999999999999999998743 2211   112356899999999999999999999 5899999999999887644332


Q ss_pred             HhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (386)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL  286 (386)
                                     .+.....++.+++.++|.+++||.+++.+.++|+.-.+.+|+.|++++|++||.++|+++|.++|
T Consensus       219 ---------------lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaL  283 (435)
T KOG0067|consen  219 ---------------LGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQAL  283 (435)
T ss_pred             ---------------cccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhh
Confidence                           12234457999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCcceEE-eeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC---CCCCCCCCCCcCCCC
Q 016620          287 KQNPMFRVG-LDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGY---PIWGNPNQVEPFLNE  362 (386)
Q Consensus       287 ~~g~i~gaa-lDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~---~~~~~v~~~~~~~~~  362 (386)
                      +.|++.+++ .+ |     ...||.+.||.++|||.++++..+...+.+.++..+++.+.|.   .++|+||+  .|..-
T Consensus       284 k~G~i~~aa~~~-~-----~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnk--E~~~~  355 (435)
T KOG0067|consen  284 KSGRIRGAAPRS-F-----KQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNK--EFSPT  355 (435)
T ss_pred             ccCceecccCcc-c-----ccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhh--hhccc
Confidence            999999998 11 1     1247899999999999999999999999999999999999884   59999998  66665


Q ss_pred             CCCC
Q 016620          363 NAQP  366 (386)
Q Consensus       363 ~~~~  366 (386)
                      ++.+
T Consensus       356 ~~p~  359 (435)
T KOG0067|consen  356 NAPW  359 (435)
T ss_pred             cCCc
Confidence            4333

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.86  E-value=2.2e-20  Score=188.53  Aligned_cols=169  Identities=20%  Similarity=0.308  Sum_probs=133.9

Q ss_pred             cccccccC-hhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016620           94 AVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (386)
Q Consensus        94 ~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG  172 (386)
                      ++|+..+- .+.....+|+|+|+|++++.++||+++++++++...+      +|.+           +..+.|++|+|+|
T Consensus       199 ttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~------~R~~-----------~~~LaGKtVgVIG  261 (476)
T PTZ00075        199 TTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLIDGI------FRAT-----------DVMIAGKTVVVCG  261 (476)
T ss_pred             hHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHHHH------HHhc-----------CCCcCCCEEEEEC
Confidence            55655442 1122346899999999999999999999999988433      3332           2579999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (386)
Q Consensus       173 ~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~  252 (386)
                      +|.||+.+|+++ ++|||+|+++++++.......         .     .++ ...+++++++.||+|++|+    .|.+
T Consensus       262 ~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~---------~-----~G~-~~~~leell~~ADIVI~at----Gt~~  321 (476)
T PTZ00075        262 YGDVGKGCAQAL-RGFGARVVVTEIDPICALQAA---------M-----EGY-QVVTLEDVVETADIFVTAT----GNKD  321 (476)
T ss_pred             CCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHH---------h-----cCc-eeccHHHHHhcCCEEEECC----Cccc
Confidence            999999999997 799999999987654432211         0     111 2357999999999999995    4789


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC
Q 016620          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK  306 (386)
Q Consensus       253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~  306 (386)
                      +|+.+.|++||+|++|||+||+   |++.++++|+.+.    ++|+++.||...
T Consensus       322 iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        322 IITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             ccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            9999999999999999999999   7888889998653    799999999754

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.82  E-value=3.3e-19  Score=152.69  Aligned_cols=101  Identities=31%  Similarity=0.428  Sum_probs=85.5

Q ss_pred             EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccc
Q 016620           18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (386)
Q Consensus        18 vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~   97 (386)
                      ||++.+++++ .++.|++ ++++++..    ..+.+++.+.+. ++|+++++...++++++++.+++|  |+|++.|+|+
T Consensus         1 ili~~~~~~~-~~~~l~~-~~~v~~~~----~~~~~~~~~~l~-~~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~   71 (133)
T PF00389_consen    1 ILITDPLPDE-EIERLEE-GFEVEFCD----SPSEEELAERLK-DADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV   71 (133)
T ss_dssp             EEESSS-SHH-HHHHHHH-TSEEEEES----SSSHHHHHHHHT-TESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred             eEEeccCCHH-HHHHHHC-CceEEEeC----CCCHHHHHHHhC-CCeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence            6788888765 4788888 55777655    247888988887 499999988777999999999988  9999999999


Q ss_pred             cccChhHHhhCCcEEecCCCCCchhHHHHH
Q 016620           98 NNVDVNAANKYGIAVGNTPGVLTETTAELA  127 (386)
Q Consensus        98 d~id~~~~~~~gI~v~n~~~~~~~~vAE~a  127 (386)
                      |+||+++++++||.|+|+||+++.+||||+
T Consensus        72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.81  E-value=3.1e-19  Score=171.99  Aligned_cols=200  Identities=18%  Similarity=0.168  Sum_probs=144.8

Q ss_pred             HHHHHHhCCCeEEEecCCCC-----CCCHHHHHHHhcCCCcEEEecCC----------------ccccHHHHHHhhccCC
Q 016620           29 WINLLIEQDCRVEICTQKKT-----ILSVEDIIALIGDKCDGVIGQLT----------------EDWGETLFAALSRAGG   87 (386)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~-----~~~~~e~~~~~~~~ad~vi~~~~----------------~~~~~~~l~~l~~l~~   87 (386)
                      ..+.|.+.|..+..+..+..     ..+..++.+..-.++|+++.-.+                ..+++++++++|.   
T Consensus        16 ~~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~---   92 (287)
T TIGR02853        16 LIRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKG---   92 (287)
T ss_pred             HHHHHHHCCCEEEEEeccccccccccceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcCC---
Confidence            35778888888766543311     00122222221135888886221                2356788888773   


Q ss_pred             cEEEEccccccccChh-HHhhCCcEEe------cCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc
Q 016620           88 KAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (386)
Q Consensus        88 k~i~~~~~G~d~id~~-~~~~~gI~v~------n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g  160 (386)
                        ++...+|+++.|++ +|+++||.|+      |++.+++.++||.++++++..                        .+
T Consensus        93 --~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------------------~~  146 (287)
T TIGR02853        93 --HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------------------TD  146 (287)
T ss_pred             --CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------------------cC
Confidence              44456688888877 8999999999      999999999999999877743                        11


Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+++|++++|+|+|.||+.+|+.| +++|++|++++|+.......         ...+.   ......+++++++++|+|
T Consensus       147 ~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~~~---------~~~g~---~~~~~~~l~~~l~~aDiV  213 (287)
T TIGR02853       147 FTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLARI---------TEMGL---IPFPLNKLEEKVAEIDIV  213 (287)
T ss_pred             CCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH---------HHCCC---eeecHHHHHHHhccCCEE
Confidence            368999999999999999999998 69999999999986542111         11111   111234678889999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      ++|+|.+     +++++.++.||+++++||++..+
T Consensus       214 int~P~~-----ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       214 INTIPAL-----VLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             EECCChH-----HhCHHHHhcCCCCeEEEEeCcCC
Confidence            9999953     67889999999999999998844

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.66  E-value=3.6e-15  Score=144.56  Aligned_cols=196  Identities=19%  Similarity=0.169  Sum_probs=141.9

Q ss_pred             HHHHHHhCCCeEEEecCCCCCC---------CHHHHHHHhcCCCcEEEecCCc----------------cccHHHHHHhh
Q 016620           29 WINLLIEQDCRVEICTQKKTIL---------SVEDIIALIGDKCDGVIGQLTE----------------DWGETLFAALS   83 (386)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~---------~~~e~~~~~~~~ad~vi~~~~~----------------~~~~~~l~~l~   83 (386)
                      ..+.|.+.|+++.+...++...         +.++   .+. ++|+++.-.+.                .++++.++.++
T Consensus        17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~---~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~   92 (296)
T PRK08306         17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEE---ALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP   92 (296)
T ss_pred             HHHHHHHCCCEEEEEeccccccccCCceeeccHHH---Hhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence            3577888999987755443221         1222   233 58988854221                23678899999


Q ss_pred             ccCCcEEEEccccccccChhHHhhCCcEEecCCCC------CchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCc
Q 016620           84 RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL  157 (386)
Q Consensus        84 ~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~------~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~  157 (386)
                      +.  .. ...|.+.++++ +.+.++||.+.+....      ++.++||.++.+.+.  +                     
T Consensus        93 ~~--~~-v~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~--~---------------------  145 (296)
T PRK08306         93 EH--CT-IFSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE--H---------------------  145 (296)
T ss_pred             CC--CE-EEEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH--h---------------------
Confidence            85  43 44689999988 8899999999987753      888899987765432  1                     


Q ss_pred             ccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       158 ~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                       .+.++.|++++|+|+|.+|+.+++.| +++|++|+++|++......  .       ...+.   ......++.+.++++
T Consensus       146 -~~~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~~--~-------~~~G~---~~~~~~~l~~~l~~a  211 (296)
T PRK08306        146 -TPITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHLAR--I-------TEMGL---SPFHLSELAEEVGKI  211 (296)
T ss_pred             -CCCCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHH--H-------HHcCC---eeecHHHHHHHhCCC
Confidence             01357899999999999999999997 7999999999998654211  1       11121   112234678889999


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      |+|+.++|.     .+++++.++.|++++++||++..
T Consensus       212 DiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        212 DIIFNTIPA-----LVLTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             CEEEECCCh-----hhhhHHHHHcCCCCcEEEEEccC
Confidence            999999983     56789999999999999999763

>PLN02494 adenosylhomocysteinase

Probab=99.61  E-value=2e-15  Score=152.35  Aligned_cols=122  Identities=20%  Similarity=0.316  Sum_probs=101.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ..+.|++|+|+|+|.||+.+|+++ ++||++|+++++++........         .+     + ...+++++++.+|+|
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~---------~G-----~-~vv~leEal~~ADVV  313 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALM---------EG-----Y-QVLTLEDVVSEADIF  313 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHh---------cC-----C-eeccHHHHHhhCCEE
Confidence            347999999999999999999997 7999999999887644222111         11     1 124789999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCcceEEeeccCCCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEDEP  303 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR-g~~vde~aL~~a--L~~g~i~gaalDV~~~EP  303 (386)
                      +.+.    .+.++++.+.|+.||+|++|+|+|| +..||+++|.++  ++.+.+. +.+|+|..|-
T Consensus       314 I~tT----Gt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        314 VTTT----GNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             EECC----CCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            9743    5789999999999999999999999 679999999998  8888877 9999998753

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.60  E-value=3.5e-14  Score=142.19  Aligned_cols=120  Identities=28%  Similarity=0.326  Sum_probs=100.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ..+.|++|+|+|+|.||+.+|+++ +++|++|+++|+++.......         ..+     + ...+++++++.+|+|
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~---------~~G-----~-~v~~leeal~~aDVV  254 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAA---------MDG-----F-RVMTMEEAAKIGDIF  254 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHH---------hcC-----C-EeCCHHHHHhcCCEE
Confidence            358999999999999999999997 799999999987765432211         111     1 234678999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeccC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      +.+..    +.++|+.+.|..||+|++++|+||+.+ ||.++|.+++.+....+..+|+|.
T Consensus       255 ItaTG----~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~  311 (406)
T TIGR00936       255 ITATG----NKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYI  311 (406)
T ss_pred             EECCC----CHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence            88763    688899999999999999999999998 999999999988888999999987

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.45  E-value=4.5e-12  Score=127.78  Aligned_cols=155  Identities=23%  Similarity=0.287  Sum_probs=109.4

Q ss_pred             ccccccccC-hhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 016620           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (386)
Q Consensus        93 ~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIv  171 (386)
                      .++|+..+- ...-.+.+++|.|++..+..+.-|...+.-.+....+.      +.           .+..+.|++|+|+
T Consensus       156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~------ra-----------t~~~l~Gk~VlVi  218 (425)
T PRK05476        156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK------RA-----------TNVLIAGKVVVVA  218 (425)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH------Hh-----------ccCCCCCCEEEEE
Confidence            456665542 22223568999999998887755533332222221110      00           1235899999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhh
Q 016620          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (386)
Q Consensus       172 G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~  251 (386)
                      |+|.||+.+|+++ +++|++|+++|+++.......         ..+     + ...+++++++.+|+|+.+.    .+.
T Consensus       219 G~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~---------~~G-----~-~v~~l~eal~~aDVVI~aT----G~~  278 (425)
T PRK05476        219 GYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAA---------MDG-----F-RVMTMEEAAELGDIFVTAT----GNK  278 (425)
T ss_pred             CCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHH---------hcC-----C-EecCHHHHHhCCCEEEECC----CCH
Confidence            9999999999997 799999999998765432211         111     1 1347889999999999876    357


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016620          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (386)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~  284 (386)
                      ++|+.+.|..||+|++++|+|+... +|.++|.+
T Consensus       279 ~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        279 DVITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            7899999999999999999999886 78777754

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.44  E-value=3.1e-13  Score=130.58  Aligned_cols=93  Identities=25%  Similarity=0.308  Sum_probs=75.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ..|+|+||||||+|+||+++|++| ++||++|++|++.......         ....+     + ...+++|++++||+|
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~~~---------A~~~G-----~-~v~sl~Eaak~ADVV   75 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSFEV---------AKADG-----F-EVMSVSEAVRTAQVV   75 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhhHH---------HHHcC-----C-EECCHHHHHhcCCEE
Confidence            569999999999999999999998 7999999999865322110         01111     2 235899999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN  270 (386)
                      ++|+|+ ++++++++++.++.||+|++|+-
T Consensus        76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f  104 (335)
T PRK13403         76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF  104 (335)
T ss_pred             EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE
Confidence            999997 77899999999999999998865

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.39  E-value=2.2e-12  Score=113.14  Aligned_cols=103  Identities=29%  Similarity=0.431  Sum_probs=77.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ..+.||++.|+|||.+|+.+|+.| +++|++|++++..+...+++..+.|               ...++++++.++|++
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~   82 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF   82 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence            469999999999999999999997 7999999999999888777655543               235799999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~  283 (386)
                      +.+..    ..++|..+.|.+||+|+++.|++.-.. +|.+.|.
T Consensus        83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~  122 (162)
T PF00670_consen   83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALE  122 (162)
T ss_dssp             EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHH
T ss_pred             EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeecccc
Confidence            99875    378899999999999999999998665 6655544

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.29  E-value=1.7e-11  Score=108.62  Aligned_cols=115  Identities=25%  Similarity=0.267  Sum_probs=85.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||..+|++| ...|.+|++||+++....+         +...+     .....++.|++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~~~---------~~~~g-----~~~~~s~~e~~~~~dvvi~~v~   66 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKAEA---------LAEAG-----AEVADSPAEAAEQADVVILCVP   66 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHHHH---------HHHTT-----EEEESSHHHHHHHBSEEEE-SS
T ss_pred             CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhhhh---------hHHhh-----hhhhhhhhhHhhcccceEeecc
Confidence            5899999999999999998 4789999999998754321         11112     3446899999999999999999


Q ss_pred             CChhhhhccc-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016620          246 LDKTTYHLIN-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (386)
Q Consensus       246 lt~~t~~li~-~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalD  297 (386)
                      ..++.+.++. .+.++.+++|.++||++....-....+.+.+++..  ...+|
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g--~~~vd  117 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG--VRYVD  117 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT--EEEEE
T ss_pred             cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc--ceeee
Confidence            8887777653 23788899999999999999999999999998754  34444

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.24  E-value=5.7e-11  Score=113.69  Aligned_cols=124  Identities=23%  Similarity=0.176  Sum_probs=100.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      .+||+||+|.||.++|++| ..-|..|.+|||++.+..+.        +...+     .....+..|+.+.+|+|++|+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~--------~~~~G-----a~~a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAEL--------LAAAG-----ATVAASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHH--------HHHcC-----CcccCCHHHHHHhCCEEEEecC
Confidence            4799999999999999998 57899999999998763221        12222     2345688899999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (386)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (386)
                      .+++.+.++.  ...++.+|+|+++||+|+.+......+.++++.+.+...--=|.-..+
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~  126 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP  126 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence            9999888875  568999999999999999999999999999998875554444555544

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.21  E-value=4.8e-10  Score=112.91  Aligned_cols=105  Identities=25%  Similarity=0.381  Sum_probs=83.0

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      +..+.|++|+|+|+|.||+.+|+.+ +++|++|+++|+++......         ...|     + ...++++.+..+|+
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A---------~~~G-----~-~~~~~~e~v~~aDV  260 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQA---------AMEG-----Y-EVMTMEEAVKEGDI  260 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHH---------HhcC-----C-EEccHHHHHcCCCE
Confidence            3468999999999999999999996 79999999999876542211         1112     1 12356788899999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~  284 (386)
                      |+.|..    +.+.++.+.+..||+|++++|+|++.+ +|..+|..
T Consensus       261 VI~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         261 FVTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             EEECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            998764    466788888999999999999999886 88777764

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.19  E-value=1.1e-10  Score=112.81  Aligned_cols=111  Identities=21%  Similarity=0.185  Sum_probs=88.1

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPl  246 (386)
                      +|||||+|.||+.+|+.| ...|.+|++||++.... +.        +...+     .....+.++++++||+|++|+|.
T Consensus         1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~--------~~~~g-----~~~~~~~~~~~~~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DE--------LLAAG-----AVTAETARQVTEQADVIFTMVPD   65 (291)
T ss_pred             CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HH--------HHHCC-----CcccCCHHHHHhcCCEEEEecCC
Confidence            589999999999999998 47899999999987542 11        11112     12346788999999999999998


Q ss_pred             Chhhhhcc-c-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       247 t~~t~~li-~-~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++.++.++ . ...+..+++|+++||++++...+.+++.+.++++.+.
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            87777664 3 3467789999999999999998889999999876444

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.18  E-value=1.3e-10  Score=112.62  Aligned_cols=123  Identities=20%  Similarity=0.224  Sum_probs=94.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+.+|+.| ...|.+|++||++......         +...+     .....++++++++||+|++|+|
T Consensus         3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~~~---------~~~~g-----~~~~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAVAE---------VIAAG-----AETASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH---------HHHCC-----CeecCCHHHHHhcCCEEEEeCC
Confidence            4799999999999999998 4789999999998754211         11111     1234678899999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (386)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (386)
                      .+..+..++.  ...++.+++|.++||+++......+++.+.+.+..+...-.-|+..+|
T Consensus        68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            8887777763  346788999999999999999888899999987655443334554443

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.11  E-value=5.5e-10  Score=108.55  Aligned_cols=114  Identities=19%  Similarity=0.266  Sum_probs=90.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiVvl  242 (386)
                      ++|||||+|.||+.+|+.| ...|.+|++||++..... .        +...+     .....++++++++   +|+|++
T Consensus         1 m~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~~-~--------~~~~g-----~~~~~s~~~~~~~~~~advVi~   65 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAVD-V--------AGKLG-----ITARHSLEELVSKLEAPRTIWV   65 (299)
T ss_pred             CEEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHHH-H--------HHHCC-----CeecCCHHHHHHhCCCCCEEEE
Confidence            3799999999999999998 478999999999865421 1        11112     2234688898876   699999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalD  297 (386)
                      |+|..+.++.++ .+.+..+++|.++||+|++...+..++.+.+++..+.  .+|
T Consensus        66 ~vp~~~~~~~v~-~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         66 MVPAGEVTESVI-KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             EecCchHHHHHH-HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            999887888877 4677889999999999999999999999999876543  355

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.11  E-value=4.6e-10  Score=108.93  Aligned_cols=112  Identities=13%  Similarity=0.173  Sum_probs=89.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||.++|+.|+ ..|.+|++||++..... .+        ...+     .....++.+++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~-~~G~~V~v~d~~~~~~~-~~--------~~~g-----~~~~~s~~~~~~~aDvVi~~vp   66 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLL-KQGHQLQVFDVNPQAVD-AL--------VDKG-----ATPAASPAQAAAGAEFVITMLP   66 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHH-HCCCeEEEEcCCHHHHH-HH--------HHcC-----CcccCCHHHHHhcCCEEEEecC
Confidence            37999999999999999984 67899999999875422 11        1111     2234688899999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      .....+.++.  ...+..+++|.++||++++.+...+.+.+.+.+..+.
T Consensus        67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~  115 (296)
T PRK15461         67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS  115 (296)
T ss_pred             CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            8776776664  3467789999999999999999999999999987655

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.00  E-value=2.7e-09  Score=103.82  Aligned_cols=111  Identities=22%  Similarity=0.276  Sum_probs=88.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiVvl  242 (386)
                      ++|||||+|.||+.+|+.| ...|.+|.+||+++.....         +...+     .....+++|+++.   +|+|++
T Consensus         1 m~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~~~---------~~~~g-----~~~~~~~~e~~~~~~~~dvvi~   65 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAVEA---------LAEEG-----ATGADSLEELVAKLPAPRVVWL   65 (301)
T ss_pred             CEEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHHHH---------HHHCC-----CeecCCHHHHHhhcCCCCEEEE
Confidence            3799999999999999998 4789999999998754321         11112     2234678888876   699999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++|..+.+..++ ...+..+++|.++||++++.......+.+.+++..+.
T Consensus        66 ~v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~  114 (301)
T PRK09599         66 MVPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH  114 (301)
T ss_pred             EecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence            999877777776 4677889999999999999999999999999887654

>PLN02712 arogenate dehydrogenase

Probab=98.99  E-value=2.5e-09  Score=114.24  Aligned_cols=112  Identities=16%  Similarity=0.218  Sum_probs=83.6

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hC
Q 016620          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA  237 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~a  237 (386)
                      .|..+.+++|||||+|.||+++|+.| +.+|.+|++||++....  .        ....+     .....++++++. .+
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~~--~--------a~~~G-----v~~~~~~~el~~~~a  426 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYSD--E--------AQKLG-----VSYFSDADDLCEEHP  426 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHHH--H--------HHHcC-----CeEeCCHHHHHhcCC
Confidence            45678999999999999999999998 67899999999875321  1        01112     123467888776 58


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      |+|++|+|. ..+..++.+-....||+|++++|++.++-...+.+.+.+.
T Consensus       427 DvVILavP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~  475 (667)
T PLN02712        427 EVILLCTSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP  475 (667)
T ss_pred             CEEEECCCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhcc
Confidence            999999995 6778887765555799999999999987544455554443

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=98.98  E-value=1.9e-09  Score=105.52  Aligned_cols=119  Identities=23%  Similarity=0.233  Sum_probs=84.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ..++|++|||||+|+||+++|+.| +.+|++|+++++........        ....+     +. ..+.++++++||+|
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~--------A~~~G-----~~-~~s~~eaa~~ADVV   77 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKK--------AEADG-----FE-VLTVAEAAKWADVI   77 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHH--------HHHCC-----Ce-eCCHHHHHhcCCEE
Confidence            468999999999999999999998 68999999887764332111        01111     22 24889999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~  304 (386)
                      ++++|.+.. ..+++++.+..|++|+++ -++.|--+  ..+    +  ...+...||+-..|.
T Consensus        78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G~~i--~~~----~--~~p~~~~~Vi~vaPn  131 (330)
T PRK05479         78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHGFNI--HFG----Q--IVPPADVDVIMVAPK  131 (330)
T ss_pred             EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCCCCh--hhc----e--eccCCCCcEEEeCCC
Confidence            999997654 777778888999999988 55666221  111    1  112445678877764

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=98.97  E-value=3.8e-09  Score=108.77  Aligned_cols=128  Identities=12%  Similarity=0.126  Sum_probs=99.9

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCEEEEc
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiVvl~  243 (386)
                      +|||||+|.||+.+|+.|+ .-|.+|.+|||+..... .+.+..    ...+...  ...+.+++|+++.   +|+|++|
T Consensus         8 ~IG~IGLG~MG~~mA~nL~-~~G~~V~V~NRt~~k~~-~l~~~~----~~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKVD-ETVERA----KKEGNLP--LYGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHH-hCCCeEEEECCCHHHHH-HHHHhh----hhcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence            6999999999999999985 67999999999876532 221100    0012111  1134688888876   9999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (386)
                      +|..+.+..++ ...+..+++|.++||+|....-+...+.+.+++..+.....=|...++
T Consensus        80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            99999888888 568889999999999999999999999999998877777666776654

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.97  E-value=2e-09  Score=104.10  Aligned_cols=104  Identities=30%  Similarity=0.417  Sum_probs=89.0

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .+.||++.|.|||.+|+.+|.++ ++.|++|+++.-.+-..+++.++.|               ....++|....+|+++
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDifi  269 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIFV  269 (420)
T ss_pred             eecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEEE
Confidence            57999999999999999999997 7999999999888777766654432               3467899999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH  285 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~a  285 (386)
                      .++    .++++|..+.|..||+|+++-|.++-.+ ||.+.|.+.
T Consensus       270 T~T----GnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~  310 (420)
T COG0499         270 TAT----GNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEEL  310 (420)
T ss_pred             Ecc----CCcCccCHHHHHhccCCeEEecccccceeccHHHHHHh
Confidence            998    4689999999999999999999998776 777766643

>PLN02256 arogenate dehydrogenase

Probab=98.96  E-value=1.1e-08  Score=99.72  Aligned_cols=136  Identities=14%  Similarity=0.169  Sum_probs=92.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiVv  241 (386)
                      -++++|||||+|.||+++|+.| +..|.+|++||++......          ...+     .....++++++ ..+|+|+
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~~a----------~~~g-----v~~~~~~~e~~~~~aDvVi   97 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSDIA----------AELG-----VSFFRDPDDFCEEHPDVVL   97 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHHHH----------HHcC-----CeeeCCHHHHhhCCCCEEE
Confidence            4678899999999999999998 5789999999987532111          1111     12246778876 4799999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC----CCCCCCCCeEE
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----PGLSEMKNAIV  317 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~----~~L~~~~nvil  317 (386)
                      +|+|. ..+..++.+-....++++++++|++.++-+-.+++.+.+..+      ..+....|...    ...+...++++
T Consensus        98 lavp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~------~~~V~~HPmaG~e~~~~~~~~~~~~~  170 (304)
T PLN02256         98 LCTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEE------FDILCTHPMFGPESGKGGWAGLPFVY  170 (304)
T ss_pred             EecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCCC------CeEEecCCCCCCCCCccccCCCeEEE
Confidence            99995 356666644335678999999999996644445555544322      24555667632    13556667888


Q ss_pred             cCCC
Q 016620          318 VPHI  321 (386)
Q Consensus       318 TPHi  321 (386)
                      +|+.
T Consensus       171 ~~~~  174 (304)
T PLN02256        171 DKVR  174 (304)
T ss_pred             ecce
Confidence            8753

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.89  E-value=1.8e-08  Score=96.93  Aligned_cols=137  Identities=14%  Similarity=0.199  Sum_probs=86.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+++|+.| +..|.+|++||++.......         ...+...   ....+. +.+++||+|++|+|
T Consensus         1 m~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a---------~~~g~~~---~~~~~~-~~~~~aDlVilavp   66 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERA---------IERGLVD---EASTDL-SLLKDCDLVILALP   66 (279)
T ss_pred             CeEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHH---------HHCCCcc---cccCCH-hHhcCCCEEEEcCC
Confidence            3799999999999999998 56799999999976542111         1111110   111233 56789999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----------CCCCCCCe
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----------GLSEMKNA  315 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~----------~L~~~~nv  315 (386)
                      ... ...++ ++....+++++++++++.-..   . ..+++....-.     +....|+..+          .|+.-.++
T Consensus        67 ~~~-~~~~~-~~l~~~l~~~~ii~d~~Svk~---~-~~~~~~~~~~~-----~v~~HPm~G~~~~g~~~a~~~lf~g~~~  135 (279)
T PRK07417         67 IGL-LLPPS-EQLIPALPPEAIVTDVGSVKA---P-IVEAWEKLHPR-----FVGSHPMAGTAESGVEAGQRGLFKNRPW  135 (279)
T ss_pred             HHH-HHHHH-HHHHHhCCCCcEEEeCcchHH---H-HHHHHHHhhCC-----ceeeCCcCCCCcchHHHhhHHHhCCCcE
Confidence            532 33333 566677899999999988553   2 23333322111     2233454321          26777889


Q ss_pred             EEcCCCCCCcHHH
Q 016620          316 IVVPHIASASKWT  328 (386)
Q Consensus       316 ilTPHia~~t~~~  328 (386)
                      ++||+-.+ +.+.
T Consensus       136 ~l~p~~~~-~~~~  147 (279)
T PRK07417        136 VLTPTENT-DLNA  147 (279)
T ss_pred             EEccCCCC-CHHH
Confidence            99997543 3443

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.88  E-value=1.3e-08  Score=104.66  Aligned_cols=128  Identities=16%  Similarity=0.233  Sum_probs=98.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiVvl  242 (386)
                      .+|||||+|.||+++|+.| ..-|.+|.+|||+.....+ +.+       .....+.......+++|+++   ++|+|++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~~~-l~~-------~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKTEE-FVK-------KAKEGNTRVKGYHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-HHH-------hhhhcCCcceecCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999998 4678999999998765321 111       00000111223568999886   4899999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (386)
                      ++|....+..++ ++.+..+++|.++||++.+..-|...+.+.+.+..+.....=|...++
T Consensus        73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            999888888888 567888999999999999999999999999998877766555665543

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=98.88  E-value=1.4e-08  Score=98.47  Aligned_cols=109  Identities=14%  Similarity=0.117  Sum_probs=85.7

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPl  246 (386)
                      +|||||+|.||+.+|+.| ...|.+|++||+++..  +.+        ...+     .....+..+++++||+|++|+|.
T Consensus         2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~--------~~~g-----~~~~~s~~~~~~~advVi~~v~~   65 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DEL--------LSLG-----AVSVETARQVTEASDIIFIMVPD   65 (292)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHH--------HHcC-----CeecCCHHHHHhcCCEEEEeCCC
Confidence            699999999999999998 4678999999987532  211        1112     22346788999999999999998


Q ss_pred             ChhhhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          247 DKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       247 t~~t~~li~~--~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      .++.+.++..  ..++.+++|.++|+++....-....+.+.+++..+
T Consensus        66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~  112 (292)
T PRK15059         66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGG  112 (292)
T ss_pred             hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            8777776632  36777899999999999999888889999887643

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.86  E-value=2.3e-08  Score=102.12  Aligned_cols=134  Identities=19%  Similarity=0.271  Sum_probs=93.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|+| +|.||+++|+.| +..|.+|.+|+++...... .       ....+     .....+.++.+.+||+|++|+
T Consensus         1 MkI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~~~-~-------a~~~g-----v~~~~~~~e~~~~aDvVIlav   66 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKGKE-V-------AKELG-----VEYANDNIDAAKDADIVIISV   66 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHHHH-H-------HHHcC-----CeeccCHHHHhccCCEEEEec
Confidence            4799997 899999999998 5789999999987643211 1       01111     122357788899999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CCCCCCCCCCeEEcCCC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MKPGLSEMKNAIVVPHI  321 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~~~L~~~~nvilTPHi  321 (386)
                      |. ..+..++ .+....+++++++++++.......+++.+.+..      +..+....|+  +..+++....+++||+-
T Consensus        67 p~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~------~~~~V~~HPmaGp~~~~~~g~~~il~p~~  137 (437)
T PRK08655         67 PI-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE------GVEILPTHPMFGPRTPSLKGQVVILTPTE  137 (437)
T ss_pred             CH-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC------CCEEEEcCCCCCCCCcccCCCEEEEecCC
Confidence            96 3445555 556677899999999998654444555544432      2234455676  34467777889999974

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.86  E-value=4.5e-08  Score=97.51  Aligned_cols=122  Identities=18%  Similarity=0.233  Sum_probs=87.9

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +.-.+|+|||+ |.||+++|+.|++.++.+|++||+...                         ...++++.+++||+|+
T Consensus         2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVi   56 (370)
T PRK08818          2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLI   56 (370)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEE
Confidence            45679999999 999999999985446999999997421                         1246788899999999


Q ss_pred             EccCCChhhhhcccHHHH---hcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC---CCCCCCCCe
Q 016620          242 LHPVLDKTTYHLINKERL---ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK---PGLSEMKNA  315 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~---~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~---~~L~~~~nv  315 (386)
                      +|+|.. .+..++. +..   ..++++++++|++.-+-    .+.+++....     .++....|+.-   ..+++..++
T Consensus        57 lavPv~-~~~~~l~-~l~~~~~~l~~~~iVtDVgSvK~----~i~~~~~~~~-----~~fVG~HPMaG~E~s~lf~g~~~  125 (370)
T PRK08818         57 FSAPIR-HTAALIE-EYVALAGGRAAGQLWLDVTSIKQ----APVAAMLASQ-----AEVVGLHPMTAPPKSPTLKGRVM  125 (370)
T ss_pred             EeCCHH-HHHHHHH-HHhhhhcCCCCCeEEEECCCCcH----HHHHHHHhcC-----CCEEeeCCCCCCCCCcccCCCeE
Confidence            999963 4455543 332   34899999999998652    2233332221     24667788842   468888889


Q ss_pred             EEcCC
Q 016620          316 IVVPH  320 (386)
Q Consensus       316 ilTPH  320 (386)
                      ++||.
T Consensus       126 iltp~  130 (370)
T PRK08818        126 VVCEA  130 (370)
T ss_pred             EEeCC
Confidence            99996

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.85  E-value=1.9e-08  Score=97.79  Aligned_cols=110  Identities=19%  Similarity=0.274  Sum_probs=84.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiVvl  242 (386)
                      ++|||||+|.||..+|+.|+ ..|.+|.+|||+..... .        +...+.     ....+++++   +..+|+|++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~-~~g~~V~~~dr~~~~~~-~--------l~~~g~-----~~~~s~~~~~~~~~~~dvIi~   65 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLA-KRGHDCVGYDHDQDAVK-A--------MKEDRT-----TGVANLRELSQRLSAPRVVWV   65 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHH-HCCCEEEEEECCHHHHH-H--------HHHcCC-----cccCCHHHHHhhcCCCCEEEE
Confidence            37999999999999999984 67999999999876432 1        111121     112455554   456899999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++|.. .+..++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus        66 ~vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        66 MVPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             EcCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            99976 777777 5677889999999999999888999999988876554

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.83  E-value=3.5e-08  Score=98.34  Aligned_cols=138  Identities=19%  Similarity=0.144  Sum_probs=86.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|+|||+|.||+++|+.| +..|.+|.+|+++........         ..+ .........++++++++||+|++|+|
T Consensus         1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~---------a~~-~~~~~~~~~~~~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLAR---------ALG-FGVIDELAADLQRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHH---------Hhc-CCCCcccccCHHHHhcCCCEEEEeCC
Confidence            4799999999999999998 577877777776554321110         001 11111123577888999999999999


Q ss_pred             CChhhhhcccHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----------CCCCCCC
Q 016620          246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----------GLSEMKN  314 (386)
Q Consensus       246 lt~~t~~li~~~~~~-~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~----------~L~~~~n  314 (386)
                      . ..+..++ .+... .+++++++++++.-+.--.+++.+.+..      ...+....|++..          .|+....
T Consensus        70 ~-~~~~~vl-~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~------~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~  141 (359)
T PRK06545         70 V-DATAALL-AELADLELKPGVIVTDVGSVKGAILAEAEALLGD------LIRFVGGHPMAGSHKSGVAAARADLFENAP  141 (359)
T ss_pred             H-HHHHHHH-HHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC------CCeEEeeCCcCcCchhhHHHhcHHHHCCCc
Confidence            6 3556665 33333 4789999999988764323333322111      1122333566432          4677777


Q ss_pred             eEEcCCCC
Q 016620          315 AIVVPHIA  322 (386)
Q Consensus       315 vilTPHia  322 (386)
                      .++||+-.
T Consensus       142 ~il~~~~~  149 (359)
T PRK06545        142 WVLTPDDH  149 (359)
T ss_pred             EEEecCCC
Confidence            89999743

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.82  E-value=5.8e-08  Score=93.25  Aligned_cols=136  Identities=24%  Similarity=0.270  Sum_probs=90.1

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEE--EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhhCCEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS  241 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiVv  241 (386)
                      -++|+|+|+|.||+++|+.| +.-|..+  +++|++.......            ...+.......+. .+.+..+|+|+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a------------~~lgv~d~~~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAA------------LELGVIDELTVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHH------------hhcCcccccccchhhhhcccCCEEE
Confidence            36899999999999999998 5666655  6666655432211            1122222212233 67788899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC----CCCCCCCeEE
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP----GLSEMKNAIV  317 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~----~L~~~~nvil  317 (386)
                      +++|- ..|..++ ++....+|+|+++++++.-.-    ..+++++.- ...-. .+....|+.-+    ++++...+++
T Consensus        70 vavPi-~~~~~~l-~~l~~~l~~g~iv~Dv~S~K~----~v~~a~~~~-~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vl  141 (279)
T COG0287          70 VAVPI-EATEEVL-KELAPHLKKGAIVTDVGSVKS----SVVEAMEKY-LPGDV-RFVGGHPMFGPEADAGLFENAVVVL  141 (279)
T ss_pred             EeccH-HHHHHHH-HHhcccCCCCCEEEecccccH----HHHHHHHHh-ccCCC-eeEecCCCCCCcccccccCCCEEEE
Confidence            99996 3455554 555558999999999988663    334444432 22222 67777888433    7888889999


Q ss_pred             cCCC
Q 016620          318 VPHI  321 (386)
Q Consensus       318 TPHi  321 (386)
                      ||.-
T Consensus       142 tp~~  145 (279)
T COG0287         142 TPSE  145 (279)
T ss_pred             cCCC
Confidence            9963

>PLN02858 fructose-bisphosphate aldolase

Probab=98.81  E-value=2.2e-08  Score=114.42  Aligned_cols=112  Identities=13%  Similarity=0.150  Sum_probs=92.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++.+||+||+|.||..||++|+ .-|.+|.+||+++.... .        +...+     ...+.++.|+.+.||+|++|
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~-~~G~~v~v~dr~~~~~~-~--------l~~~G-----a~~~~s~~e~a~~advVi~~   67 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLL-RSGFKVQAFEISTPLME-K--------FCELG-----GHRCDSPAEAAKDAAALVVV   67 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHH-HCCCeEEEEcCCHHHHH-H--------HHHcC-----CeecCCHHHHHhcCCEEEEE
Confidence            4568999999999999999984 67999999999875432 1        11222     23457899999999999999


Q ss_pred             cCCChhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620          244 PVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       244 lPlt~~t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~  290 (386)
                      +|..+..+.++  ....+..+++|.++||+|+...-....+.+.+++..
T Consensus        68 l~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g  116 (1378)
T PLN02858         68 LSHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK  116 (1378)
T ss_pred             cCChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence            99988888886  346788899999999999999999999999998764

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.78  E-value=2.1e-08  Score=95.11  Aligned_cols=95  Identities=23%  Similarity=0.438  Sum_probs=82.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .+.||.+.|.|||..|+.+|..| ++||++|++....+-..+.+-++.|               ....++|+.++.||++
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG~---------------~V~tm~ea~~e~difV  274 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEGY---------------EVTTLEEAIREVDIFV  274 (434)
T ss_pred             eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhcc---------------EeeeHHHhhhcCCEEE
Confidence            47899999999999999999998 8999999999877776666544433               3578999999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      .+.    ..+++|..+.|.+||+++++.|++.-.+
T Consensus       275 TtT----Gc~dii~~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  275 TTT----GCKDIITGEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             Ecc----CCcchhhHHHHHhCcCCcEEeccccccc
Confidence            887    4688999999999999999999988665

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.77  E-value=4.7e-08  Score=100.46  Aligned_cols=125  Identities=22%  Similarity=0.247  Sum_probs=92.1

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hhCCEEEEc
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLH  243 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiVvl~  243 (386)
                      .|||||+|.||+++|+.|+ .-|.+|++|||+..... ...        .....+.......+++++.   +.+|+|+++
T Consensus         1 ~IG~IGLG~MG~~mA~nL~-~~G~~V~v~drt~~~~~-~l~--------~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~   70 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMA-DHGFTVSVYNRTPEKTD-EFL--------AEHAKGKKIVGAYSIEEFVQSLERPRKIMLM   70 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHH-hcCCeEEEEeCCHHHHH-HHH--------hhccCCCCceecCCHHHHHhhcCCCCEEEEE
Confidence            3899999999999999984 67999999999876532 211        1100010112245677766   468999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE  302 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~E  302 (386)
                      +|....+..++ .+.+..+++|.++||++....-|...+.+.+++..+.....=|...+
T Consensus        71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~  128 (467)
T TIGR00873        71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGE  128 (467)
T ss_pred             CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCH
Confidence            99877778877 56778899999999999999889899999998776665544455544

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02858 fructose-bisphosphate aldolase

Probab=98.77  E-value=3.1e-08  Score=113.22  Aligned_cols=109  Identities=19%  Similarity=0.268  Sum_probs=89.4

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .++|||||+|.||..||++| ...|.+|++||+++.... .        +...+     .....+..+++++||+|++|+
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~~-~--------l~~~G-----a~~~~s~~e~~~~aDvVi~~V  388 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTLV-R--------FENAG-----GLAGNSPAEVAKDVDVLVIMV  388 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHHcC-----CeecCCHHHHHhcCCEEEEec
Confidence            47899999999999999998 578999999999875422 1        11112     122468899999999999999


Q ss_pred             CCChhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       245 Plt~~t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      |...+++.++  ....++.+++|.++||+|....-....+.+.+++
T Consensus       389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~  434 (1378)
T PLN02858        389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN  434 (1378)
T ss_pred             CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence            9888888887  3457888999999999999998888899998887

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.76  E-value=9.2e-08  Score=93.24  Aligned_cols=145  Identities=19%  Similarity=0.211  Sum_probs=89.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ..++|+|||+|.||+.+|+.| +..|  .+|++||++......         ....+.   ......++++.+++||+|+
T Consensus         5 ~~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~~~---------a~~~g~---~~~~~~~~~~~~~~aDvVi   71 (307)
T PRK07502          5 LFDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETRAR---------ARELGL---GDRVTTSAAEAVKGADLVI   71 (307)
T ss_pred             CCcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHHHH---------HHhCCC---CceecCCHHHHhcCCCEEE
Confidence            346899999999999999987 4555  489999998654211         111111   1112356788889999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC----------CCCCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----------PGLSE  311 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~----------~~L~~  311 (386)
                      +|+|.. .+..++ ++....+++++++++++....    .+.+++....-.  ...+....|...          ..|++
T Consensus        72 iavp~~-~~~~v~-~~l~~~l~~~~iv~dvgs~k~----~~~~~~~~~~~~--~~~~v~~hPm~g~e~~G~~~a~~~l~~  143 (307)
T PRK07502         72 LCVPVG-ASGAVA-AEIAPHLKPGAIVTDVGSVKA----SVIAAMAPHLPE--GVHFIPGHPLAGTEHSGPDAGFAELFE  143 (307)
T ss_pred             ECCCHH-HHHHHH-HHHHhhCCCCCEEEeCccchH----HHHHHHHHhCCC--CCeEEeCCCCCCCcccchhhcCHHHHC
Confidence            999963 333333 455667899999999977542    223333322111  123344445421          24666


Q ss_pred             CCCeEEcCCCCCCcHHHHH
Q 016620          312 MKNAIVVPHIASASKWTRE  330 (386)
Q Consensus       312 ~~nvilTPHia~~t~~~~~  330 (386)
                      ..++++||+-+ .+.+..+
T Consensus       144 g~~~~l~~~~~-~~~~~~~  161 (307)
T PRK07502        144 NRWCILTPPEG-TDPAAVA  161 (307)
T ss_pred             CCeEEEeCCCC-CCHHHHH
Confidence            67899999644 3444333

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.76  E-value=1.4e-07  Score=92.47  Aligned_cols=131  Identities=16%  Similarity=0.209  Sum_probs=89.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCC----CccccccCCHHHHhhhCCE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQ----PVTWKRASSMDEVLREADV  239 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~l~ell~~aDi  239 (386)
                      ++|||||.|.||..+|..++ ..|++|+.||+++.....  .......+.+.+.+..    ........++++.+++||+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDl   86 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADF   86 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCE
Confidence            58999999999999999985 789999999998754211  1111111111111110    1122345689999999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      |+-|+|.+.+.+.-+-++..+.++++++|-.. ... +...++.+.++. .-..+++-.|.
T Consensus        87 ViEavpE~l~vK~~lf~~l~~~~~~~aIlaSn-TS~-l~~s~la~~~~~-p~R~~g~Hffn  144 (321)
T PRK07066         87 IQESAPEREALKLELHERISRAAKPDAIIASS-TSG-LLPTDFYARATH-PERCVVGHPFN  144 (321)
T ss_pred             EEECCcCCHHHHHHHHHHHHHhCCCCeEEEEC-CCc-cCHHHHHHhcCC-cccEEEEecCC
Confidence            99999999998888888888999999855433 333 456777777753 34566666554

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.75  E-value=6.8e-07  Score=86.36  Aligned_cols=170  Identities=19%  Similarity=0.224  Sum_probs=106.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +.-++.|.+.+....++ ..+++|+.+.+..     ..|++++..+  ..+++.. ++...-.  |=|-    |+....+
T Consensus        56 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  128 (301)
T PRK14194         56 LRAEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--KDVD----GFHSENV  128 (301)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--hccC----ccChhhh
Confidence            34556788876655543 3467766655422     4689998765  4455543 3333222  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      ..+.      .+-+ .+...++.-++.++    ++                     .+.++.||+|+|||.| .+|+++|
T Consensus       129 g~l~------~~~~-~~~PcTp~aii~lL----~~---------------------~~i~l~Gk~V~vIG~s~ivG~PmA  176 (301)
T PRK14194        129 GGLS------QGRD-VLTPCTPSGCLRLL----ED---------------------TCGDLTGKHAVVIGRSNIVGKPMA  176 (301)
T ss_pred             hHHh------cCCC-CCCCCcHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCccHHHHH
Confidence            2111      1112 23344454444322    21                     1357999999999996 9999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-|++|.+|+++.                            .++.++.++||+|+++++..    +++....   
T Consensus       177 ~~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~---  220 (301)
T PRK14194        177 ALL-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW---  220 (301)
T ss_pred             HHH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---
Confidence            998 56799999997632                            36788899999999999853    4555544   


Q ss_pred             CCCCcEEEEcCCCc
Q 016620          262 MKKEAILVNCSRGP  275 (386)
Q Consensus       262 mk~gailIN~aRg~  275 (386)
                      +|+|+++||+|--.
T Consensus       221 ik~GaiVIDvgin~  234 (301)
T PRK14194        221 LKPGAVVIDVGINR  234 (301)
T ss_pred             ccCCcEEEEecccc
Confidence            89999999998644

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.74  E-value=4.3e-08  Score=94.75  Aligned_cols=108  Identities=20%  Similarity=0.209  Sum_probs=83.3

Q ss_pred             EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh
Q 016620          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (386)
Q Consensus       170 IvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~  249 (386)
                      |||+|.||.++|+.| ...|.+|++|||+......         +...+     .....++.+++++||+|++|+|...+
T Consensus         1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~~~---------l~~~g-----~~~~~s~~~~~~~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAVEE---------AVAAG-----AQAAASPAEAAEGADRVITMLPAGQH   65 (288)
T ss_pred             CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHHHH---------HHHcC-----CeecCCHHHHHhcCCEEEEeCCChHH
Confidence            589999999999998 4678999999998754221         11112     22346889999999999999998777


Q ss_pred             hhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       250 t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ...++.  ...+..+++|.++||++....-....+.+.+++..+.
T Consensus        66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~  110 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV  110 (288)
T ss_pred             HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            777663  4567789999999999988877778888888765443

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.74  E-value=4.6e-08  Score=95.62  Aligned_cols=97  Identities=25%  Similarity=0.278  Sum_probs=69.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      |+|++|||||+|+||+++|+.| +.+|++|+++++......+.        ....+     .. ..+..+++++||+|++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~--------a~~~G-----v~-~~s~~ea~~~ADiVvL   65 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKK--------ATEDG-----FK-VGTVEEAIPQADLIMN   65 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHH--------HHHCC-----CE-ECCHHHHHhcCCEEEE
Confidence            5789999999999999999998 68899988765543322211        11111     11 2468889999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      ++|... ....+.++....++++. +|.++.|=-
T Consensus        66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~   97 (314)
T TIGR00465        66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFN   97 (314)
T ss_pred             eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCcc
Confidence            999532 34455566778888886 788877754

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.73  E-value=3.9e-07  Score=88.03  Aligned_cols=128  Identities=15%  Similarity=0.160  Sum_probs=83.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcCCCC--------ccccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQP--------VTWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~l~ell  234 (386)
                      ++|+|||+|.||..+|..|+ ..|.+|++||++...... ..........   +.+...        .......++++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   79 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFA-VSGFQTTLVDIKQEQLES-AQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV   79 (288)
T ss_pred             cEEEEECccHHHHHHHHHHH-hCCCcEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence            57999999999999999984 679999999998754221 1100000000   000000        0112246788999


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalDV~  299 (386)
                      ++||+|+.|+|...+.+..+-.+..+.+++++++ +|+|...+   ..+.+.++. .-...++..+
T Consensus        80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            9999999999987776665556677788999877 78877554   456665542 2334566666

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.73  E-value=3.1e-07  Score=89.02  Aligned_cols=117  Identities=25%  Similarity=0.246  Sum_probs=77.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCCC-------cc-ccccCCHHHHhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP-------VT-WKRASSMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~-------~~-~~~~~~l~ell~  235 (386)
                      ++|||||+|.||.++|+.++ ..|.+|++||++.......  .....-+.+...+...       .. .....+. +.++
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~   82 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAA-AAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL-EELR   82 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH-HHhC
Confidence            57999999999999999984 6799999999987542210  0000000011111100       00 1112344 5679


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI-N~aRg~~vde~aL~~aL~  287 (386)
                      .||+|+.|+|.+++.+..+-.+....++++++|+ |+|.-.   ...+.+.+.
T Consensus        83 ~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~  132 (295)
T PLN02545         83 DADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ  132 (295)
T ss_pred             CCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence            9999999999999988887777778899999886 777654   445666554

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.71  E-value=7.8e-08  Score=91.44  Aligned_cols=119  Identities=18%  Similarity=0.183  Sum_probs=93.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ..+.++||+||+|.||..++..|. ..|.+|++|||+.+...+         +.+.|     .....+..|+.+.||+|+
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nLi-k~G~kVtV~dr~~~k~~~---------f~~~G-----a~v~~sPaeVae~sDvvi   96 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNLI-KAGYKVTVYDRTKDKCKE---------FQEAG-----ARVANSPAEVAEDSDVVI   96 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHHH-HcCCEEEEEeCcHHHHHH---------HHHhc-----hhhhCCHHHHHhhcCEEE
Confidence            356789999999999999999884 689999999998865322         22222     334578999999999999


Q ss_pred             EccCCChhhhhcccH--HHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEee
Q 016620          242 LHPVLDKTTYHLINK--ERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (386)
Q Consensus       242 l~lPlt~~t~~li~~--~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalD  297 (386)
                      .++|...+.++++..  ..++..++|... |+.+.-+..-...|.++++..  .+-.+|
T Consensus        97 tmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~--~~~~vD  153 (327)
T KOG0409|consen   97 TMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNK--GGRFVD  153 (327)
T ss_pred             EEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhC--CCeEEe
Confidence            999998888887744  477778888777 899998887788888888875  344455

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.71  E-value=3.2e-07  Score=91.98  Aligned_cols=148  Identities=14%  Similarity=0.137  Sum_probs=94.3

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       120 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      ....++-.+-.++...|...      +++    |..    ......++|+||| +|.||+++|+.| +..|..|.+||++
T Consensus        67 ~~~~~~~i~~~i~~~s~~~q------~~~----~~~----~~~~~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~  131 (374)
T PRK11199         67 PPDLIEDVLRRVMRESYSSE------NDK----GFK----TLNPDLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQD  131 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHh------HHh----ccc----ccCcccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCC
Confidence            44455666666776666432      222    211    1223558999999 999999999998 5778999999974


Q ss_pred             hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (386)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd  278 (386)
                      ..                           .+.++++++||+|++|+|... +..++ ++... +++|+++++++..+..-
T Consensus       132 ~~---------------------------~~~~~~~~~aDlVilavP~~~-~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~  181 (374)
T PRK11199        132 DW---------------------------DRAEDILADAGMVIVSVPIHL-TEEVI-ARLPP-LPEDCILVDLTSVKNAP  181 (374)
T ss_pred             cc---------------------------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HHHhC-CCCCcEEEECCCccHHH
Confidence            21                           245678889999999999753 45555 34444 89999999998854322


Q ss_pred             HHHHHHHHHcCCcceEEeeccCCCCCCCC--CCCCCCCeEEcCC
Q 016620          279 EVALVEHLKQNPMFRVGLDVFEDEPYMKP--GLSEMKNAIVVPH  320 (386)
Q Consensus       279 e~aL~~aL~~g~i~gaalDV~~~EP~~~~--~L~~~~nvilTPH  320 (386)
                      ..++.+.+.     +   .+....|+..+  ..+....++++|+
T Consensus       182 ~~~~~~~~~-----~---~fvg~HPm~G~~~~~~~~~~vv~~~~  217 (374)
T PRK11199        182 LQAMLAAHS-----G---PVLGLHPMFGPDVGSLAKQVVVVCDG  217 (374)
T ss_pred             HHHHHHhCC-----C---CEEeeCCCCCCCCcccCCCEEEEcCC
Confidence            233333221     1   23445666322  2334445777775

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.69  E-value=9e-07  Score=84.95  Aligned_cols=171  Identities=16%  Similarity=0.208  Sum_probs=108.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++.+..++ ..+++|+.+.+..     +.|++++..+  ..+++. +++.++-.  |=|-    |+....+
T Consensus        55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  127 (285)
T PRK14189         55 KACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--KDVD----GFHVANA  127 (285)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhhh
Confidence            44566788887766543 3467776655432     4689998755  455544 33333322  2221    2111111


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh-HHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~I-G~~iA  181 (386)
                      ...      ..+-++ +...+|.-++-+    +++                     .+.++.|++|.|||.|.+ |+.+|
T Consensus       128 g~l------~~~~~~-~~PcTp~aii~l----L~~---------------------~~i~l~Gk~vvViGrs~iVGkPla  175 (285)
T PRK14189        128 GAL------MTGQPL-FRPCTPYGVMKM----LES---------------------IGIPLRGAHAVVIGRSNIVGKPMA  175 (285)
T ss_pred             hHh------hCCCCC-CcCCCHHHHHHH----HHH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence            111      112222 334445444322    221                     125799999999999999 99999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ...|++|+++..+                            ..++.+.+++||+|+++++    +.++++.   +.
T Consensus       176 ~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~avG----~~~~i~~---~~  219 (285)
T PRK14189        176 MLL-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAVG----KRNVLTA---DM  219 (285)
T ss_pred             HHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcCC----CcCccCH---HH
Confidence            998 5899999987532                            1468889999999999998    3678887   55


Q ss_pred             CCCCcEEEEcCCCcc
Q 016620          262 MKKEAILVNCSRGPV  276 (386)
Q Consensus       262 mk~gailIN~aRg~~  276 (386)
                      +|+|+++||+|.-.+
T Consensus       220 ik~gavVIDVGin~~  234 (285)
T PRK14189        220 VKPGATVIDVGMNRD  234 (285)
T ss_pred             cCCCCEEEEcccccc
Confidence            799999999987543

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.68  E-value=5.8e-08  Score=94.73  Aligned_cols=82  Identities=24%  Similarity=0.346  Sum_probs=66.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+++|||||+|.+|+.+|++| ...|.+|.+|+|+..                           .+++++++++|+|+++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~   54 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA   54 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence            467899999999999999998 578999999998542                           3677889999999999


Q ss_pred             cCCChhhhhcccHHHHh-cCCCCcEEEEcCCCc
Q 016620          244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGP  275 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~-~mk~gailIN~aRg~  275 (386)
                      +|. +....++.. ... .+++++++|++++|-
T Consensus        55 vp~-~~~~~v~~~-l~~~~~~~~~ivi~~s~gi   85 (308)
T PRK14619         55 VSM-KGVRPVAEQ-VQALNLPPETIIVTATKGL   85 (308)
T ss_pred             CCh-HHHHHHHHH-HHHhcCCCCcEEEEeCCcc
Confidence            997 466676633 323 478899999998854

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.68  E-value=9.9e-07  Score=85.19  Aligned_cols=156  Identities=14%  Similarity=0.095  Sum_probs=95.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCC---------CccccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQ---------PVTWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~l~ell  234 (386)
                      ++|+|||.|.||.++|..++ ..|.+|+.||++.......  ..........+.+..         ........++++.+
T Consensus         4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~   82 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV   82 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence            57999999999999999985 5689999999986532111  100000000000000         01112346888889


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~n  314 (386)
                      +.||+|+.|+|...+.+.-+-++....++++++++..+.+  +....+.+.++.. -...++..|       .|.+.++.
T Consensus        83 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~~-~r~vg~Hf~-------~p~~~~~l  152 (287)
T PRK08293         83 KDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGRP-EKFLALHFA-------NEIWKNNT  152 (287)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCCc-ccEEEEcCC-------CCCCcCCe
Confidence            9999999999976655555556667778999988543333  2445666665432 233444322       23567788


Q ss_pred             eEEcCCCCCCcHHHHHHHH
Q 016620          315 AIVVPHIASASKWTREGMA  333 (386)
Q Consensus       315 vilTPHia~~t~~~~~~~~  333 (386)
                      +.+.||-. .+.++.+.+.
T Consensus       153 vevv~~~~-t~~~~~~~~~  170 (287)
T PRK08293        153 AEIMGHPG-TDPEVFDTVV  170 (287)
T ss_pred             EEEeCCCC-CCHHHHHHHH
Confidence            88888643 4555544443

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.66  E-value=2.7e-07  Score=93.99  Aligned_cols=140  Identities=15%  Similarity=0.108  Sum_probs=90.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-----------cccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-----------TWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~ell  234 (386)
                      ++|||||+|.||..+|..|+ . |.+|++||++.... +..        . .+..+.           +....++..+.+
T Consensus         7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~v-e~l--------~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~   74 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKRI-LEL--------K-NGVDVNLETTEEELREARYLKFTSEIEKI   74 (425)
T ss_pred             CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHHH-HHH--------H-CcCCCCCCCCHHHHHhhCCeeEEeCHHHH
Confidence            68999999999999999985 3 68999999987542 211        1 111110           011123334568


Q ss_pred             hhCCEEEEccCCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH-Hc--CCcceE-EeeccCCC
Q 016620          235 READVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL-KQ--NPMFRV-GLDVFEDE  302 (386)
Q Consensus       235 ~~aDiVvl~lPlt------~~t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL-~~--g~i~ga-alDV~~~E  302 (386)
                      ++||++++|+|..      ++...++  .+...+.+++|.++|+.|+-.+--.+.++..+ ++  |...+- -.=+|.+|
T Consensus        75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE  154 (425)
T PRK15182         75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE  154 (425)
T ss_pred             cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence            9999999999965      2334444  34567889999999999998887777654444 32  221111 11246678


Q ss_pred             CCCC----CCCCCCCCeEE
Q 016620          303 PYMK----PGLSEMKNAIV  317 (386)
Q Consensus       303 P~~~----~~L~~~~nvil  317 (386)
                      |+..    ..+...+.++.
T Consensus       155 ~v~~G~a~~~~~~~~riv~  173 (425)
T PRK15182        155 RINPGDKKHRLTNIKKITS  173 (425)
T ss_pred             cCCCCcccccccCCCeEEE
Confidence            8853    25667777743

>PLN02712 arogenate dehydrogenase

Probab=98.60  E-value=1.7e-07  Score=100.34  Aligned_cols=137  Identities=15%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV  240 (386)
                      .-+-++|||||+|.||+.+|+.| +.+|.+|++||++......          ...+     .....++++++ .++|+|
T Consensus        49 ~~~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~A----------~~~G-----v~~~~d~~e~~~~~aDvV  112 (667)
T PLN02712         49 NTTQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLAA----------RSLG-----VSFFLDPHDLCERHPDVI  112 (667)
T ss_pred             cCCCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH----------HHcC-----CEEeCCHHHHhhcCCCEE
Confidence            34556899999999999999998 5789999999987432111          1111     22345778865 569999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC-----CCCCCCCe
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP-----GLSEMKNA  315 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~-----~L~~~~nv  315 (386)
                      ++|+|. ..+..++..-.+..++++++++|+++-+.    .+.++++...  .-..++..-.|+.-+     .+-..+ +
T Consensus       113 iLavP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK~----~~~~~l~~~l--~~~~~~v~~HPMaG~e~~~~g~~~~~-~  184 (667)
T PLN02712        113 LLCTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVKE----FAKNLLLDYL--PEDFDIICSHPMFGPQSAKHGWDGLR-F  184 (667)
T ss_pred             EEcCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCcH----HHHHHHHHhc--CCCCeEEeeCCcCCCccccchhccCc-E
Confidence            999995 46777776644567999999999986552    2333333221  111245566676322     122333 7


Q ss_pred             EEcCCCC
Q 016620          316 IVVPHIA  322 (386)
Q Consensus       316 ilTPHia  322 (386)
                      ++.|.+.
T Consensus       185 ~~~~~~~  191 (667)
T PLN02712        185 VYEKVRI  191 (667)
T ss_pred             EEeeccC
Confidence            7776553

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.60  E-value=1.7e-06  Score=82.98  Aligned_cols=170  Identities=19%  Similarity=0.292  Sum_probs=106.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHHH-HHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~l-~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++.+..++. .+++|+.+.+..     +.|++++..+  ..+++..+ +..+-.  |=|-    |+....+
T Consensus        55 k~~~~~Gi~~~~~~l~~~-~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  127 (284)
T PRK14179         55 RSALAAGFKSEVVRLPET-ISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--KDVD----GFHPMNT  127 (284)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cccc----ccCHhhH
Confidence            445667888876665543 467766654432     4689998754  34544333 333222  2221    2211111


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~-G~IG~~iA  181 (386)
                      ..+      ..+.++ +...++.-++.++    ++                     .+.++.|++|+|||. |.+|+++|
T Consensus       128 g~l------~~~~~~-~~PcTp~avi~lL----~~---------------------~~i~l~Gk~v~vIG~S~ivG~Pla  175 (284)
T PRK14179        128 GHL------WSGRPV-MIPCTPAGIMEMF----RE---------------------YNVELEGKHAVVIGRSNIVGKPMA  175 (284)
T ss_pred             HHH------hCCCCC-CcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcCcHHHH
Confidence            111      112222 4455555544322    21                     225799999999999 99999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-|++|.+|...                            ..++.+.+++||+|+.+++.    .+++..+.   
T Consensus       176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~----~~~v~~~~---  219 (284)
T PRK14179        176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGR----GHFVTKEF---  219 (284)
T ss_pred             HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCc----cccCCHHH---
Confidence            998 4679999998421                            13688899999999999985    34465544   


Q ss_pred             CCCCcEEEEcCCCc
Q 016620          262 MKKEAILVNCSRGP  275 (386)
Q Consensus       262 mk~gailIN~aRg~  275 (386)
                      +|+|+++||+|--.
T Consensus       220 ik~GavVIDvgin~  233 (284)
T PRK14179        220 VKEGAVVIDVGMNR  233 (284)
T ss_pred             ccCCcEEEEeccee
Confidence            89999999998544

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.58  E-value=8e-08  Score=96.70  Aligned_cols=91  Identities=20%  Similarity=0.263  Sum_probs=64.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC------hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (386)
                      ..|+|++|+|||+|++|+.-|..| +..|.+|.+--|.      ......         ....+     + ...+++|++
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~k---------A~~dG-----F-~v~~~~Ea~   95 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRK---------ATENG-----F-KVGTYEELI   95 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHHH---------HHhcC-----C-ccCCHHHHH
Confidence            569999999999999999666554 4556665522221      111100         01111     2 236899999


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV  269 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI  269 (386)
                      ++||+|++++|++ + ++.+.++.+..||+|+.|.
T Consensus        96 ~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~  128 (487)
T PRK05225         96 PQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG  128 (487)
T ss_pred             HhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE
Confidence            9999999999998 3 7777799999999998874

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.58  E-value=1.7e-07  Score=82.17  Aligned_cols=92  Identities=32%  Similarity=0.341  Sum_probs=62.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      |+||+|+|||||..|.+-|..| +..|.+|++-.+......+.        .++.|     + ...+.+|++++||+|++
T Consensus         2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~--------A~~~G-----f-~v~~~~eAv~~aDvV~~   66 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEK--------AKADG-----F-EVMSVAEAVKKADVVML   66 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHH--------HHHTT-------ECCEHHHHHHC-SEEEE
T ss_pred             cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHH--------HHHCC-----C-eeccHHHHHhhCCEEEE
Confidence            6899999999999999999998 78999999887765422111        12222     2 24689999999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVN  270 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN  270 (386)
                      .+|. .....++.++....||+|+.|+=
T Consensus        67 L~PD-~~q~~vy~~~I~p~l~~G~~L~f   93 (165)
T PF07991_consen   67 LLPD-EVQPEVYEEEIAPNLKPGATLVF   93 (165)
T ss_dssp             -S-H-HHHHHHHHHHHHHHS-TT-EEEE
T ss_pred             eCCh-HHHHHHHHHHHHhhCCCCCEEEe
Confidence            9995 23355667888889999987754

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.58  E-value=2.7e-07  Score=73.95  Aligned_cols=92  Identities=26%  Similarity=0.351  Sum_probs=61.2

Q ss_pred             eEEEEecChhHHHHHHHHHhcCC---cEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ||||||+|+||+++++.| ..-|   .+|+ +++|+++... ++.+.+       +   ... ...+..|++++||+|++
T Consensus         1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~~-~~~~~~-------~---~~~-~~~~~~~~~~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKAA-ELAKEY-------G---VQA-TADDNEEAAQEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHHH-HHHHHC-------T---TEE-ESEEHHHHHHHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHHH-HHHHhh-------c---ccc-ccCChHHhhccCCEEEE
Confidence            699999999999999998 4778   8999 5588876532 211111       1   111 12378899999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      |+|.  +...-+..+. ....++.++|++.-|
T Consensus        68 av~p--~~~~~v~~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   68 AVKP--QQLPEVLSEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             -S-G--GGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred             EECH--HHHHHHHHHH-hhccCCCEEEEeCCC
Confidence            9994  3333233444 556788899987643

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.57  E-value=9e-07  Score=89.95  Aligned_cols=109  Identities=23%  Similarity=0.237  Sum_probs=75.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH------------
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------  233 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el------------  233 (386)
                      ++|+|||+|.||..+|..|+ ..|.+|++||+++.... ..        . .+..+.   ....++++            
T Consensus         4 ~kI~VIGlG~~G~~~A~~La-~~G~~V~~~D~~~~~v~-~l--------~-~g~~~~---~e~~l~~~l~~~~~~g~l~~   69 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFA-SRQKQVIGVDINQHAVD-TI--------N-RGEIHI---VEPDLDMVVKTAVEGGYLRA   69 (415)
T ss_pred             cEEEEECcchhhHHHHHHHH-hCCCEEEEEeCCHHHHH-HH--------H-CCCCCc---CCCCHHHHHHHHhhcCceee
Confidence            68999999999999999984 67999999999875422 11        1 111110   11233333            


Q ss_pred             ---hhhCCEEEEccCCC------hhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          234 ---LREADVISLHPVLD------KTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       234 ---l~~aDiVvl~lPlt------~~t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                         ++.||+|++|+|..      ++...+.  -+.....+++|+++|+.|...+--.+.+...+.+
T Consensus        70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~  135 (415)
T PRK11064         70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE  135 (415)
T ss_pred             ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence               24799999999964      1222222  2456778899999999999877777777776665

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.56  E-value=3.3e-06  Score=81.63  Aligned_cols=170  Identities=18%  Similarity=0.205  Sum_probs=104.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++....++ ..+++|+.+.+..     +.|++++..+  ..+++. +++..+-.  |=|-    |+..+.+
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~--KDVD----Gl~~~n~  127 (296)
T PRK14188         55 KQTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE--KDVD----GLHVVNA  127 (296)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCChhhH
Confidence            44566788877655443 3477777655432     3689998754  445543 33333322  2221    2211111


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe-cChhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG-~G~IG~~iA  181 (386)
                      -.+.      .+.+ .+...+|.-++.++    ++                     .+.++.|++|+||| .|.+|+++|
T Consensus       128 g~l~------~~~~-~~~PcTp~ai~~ll----~~---------------------~~i~~~Gk~V~viGrs~~mG~PmA  175 (296)
T PRK14188        128 GRLA------TGET-ALVPCTPLGCMMLL----RR---------------------VHGDLSGLNAVVIGRSNLVGKPMA  175 (296)
T ss_pred             HHHh------CCCC-CCcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEEcCCcchHHHHH
Confidence            1111      1112 23445554444322    11                     12469999999999 999999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-|+.|.+|+.+.                            .++++++++||+|+++++...    ++.+..   
T Consensus       176 ~~L-~~~g~tVtv~~~rT----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~---  219 (296)
T PRK14188        176 QLL-LAANATVTIAHSRT----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW---  219 (296)
T ss_pred             HHH-HhCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe---
Confidence            998 46799999995311                            256788999999999998633    454433   


Q ss_pred             CCCCcEEEEcCCCc
Q 016620          262 MKKEAILVNCSRGP  275 (386)
Q Consensus       262 mk~gailIN~aRg~  275 (386)
                      +|+|+++||+|--.
T Consensus       220 lk~GavVIDvGin~  233 (296)
T PRK14188        220 IKPGATVIDVGINR  233 (296)
T ss_pred             ecCCCEEEEcCCcc
Confidence            89999999998644

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.56  E-value=2.2e-07  Score=93.00  Aligned_cols=101  Identities=19%  Similarity=0.386  Sum_probs=73.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-CccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +.+.+|.|+|+|.+|+.+++.+ +.+|++|.++|++.... +.....+       +.. ........++.+.++++|+|+
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~~-~~l~~~~-------g~~v~~~~~~~~~l~~~l~~aDvVI  235 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDRL-RQLDAEF-------GGRIHTRYSNAYEIEDAVKRADLLI  235 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHHhc-------CceeEeccCCHHHHHHHHccCCEEE
Confidence            6778899999999999999997 79999999999876432 1111111       100 000111235677889999999


Q ss_pred             EccCCC-hhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          242 LHPVLD-KTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       242 l~lPlt-~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      .+++.+ ..+..+++++.++.||+++++||++
T Consensus       236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva  267 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVA  267 (370)
T ss_pred             EccccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence            998653 2356689999999999999999986

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.56  E-value=1.7e-06  Score=79.35  Aligned_cols=109  Identities=20%  Similarity=0.321  Sum_probs=77.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hCCE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDi  239 (386)
                      .+++|++++|+|+|+||+.+|+.| ..+|++|+++|++.... ..+.+.+       +     .. ..+.++++. +||+
T Consensus        24 ~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~-------g-----~~-~v~~~~l~~~~~Dv   88 (200)
T cd01075          24 DSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELF-------G-----AT-VVAPEEIYSVDADV   88 (200)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHc-------C-----CE-EEcchhhccccCCE
Confidence            579999999999999999999998 68999999999876432 2211110       1     11 123355554 7999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      ++.|..     .++|+++.+..|+. .+++..+-+.+-| ..-.+.|++..+
T Consensus        89 ~vp~A~-----~~~I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi  133 (200)
T cd01075          89 FAPCAL-----GGVINDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGI  133 (200)
T ss_pred             EEeccc-----ccccCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCC
Confidence            987765     45888999999974 4888888888765 444556665543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.56  E-value=1e-06  Score=83.84  Aligned_cols=103  Identities=30%  Similarity=0.377  Sum_probs=72.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc----EEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++|||||+|.||+++++.|. .-|.    +|++| +|+.... ..        +...+     .....+..+++++||+|
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~-~~g~~~~~~i~v~~~r~~~~~-~~--------~~~~g-----~~~~~~~~e~~~~aDvV   65 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLV-ASGVVPPSRISTADDSNPARR-DV--------FQSLG-----VKTAASNTEVVKSSDVI   65 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHH-HCCCCCcceEEEEeCCCHHHH-HH--------HHHcC-----CEEeCChHHHHhcCCEE
Confidence            47999999999999999984 4565    88999 8776442 21        11112     22345778889999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      ++|+| ......++ .+....++++.++|++.-|  +..+.+.+.+.
T Consensus        66 il~v~-~~~~~~vl-~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         66 ILAVK-PQVVKDVL-TELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             EEEEC-cHHHHHHH-HHHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence            99997 45556665 3455667889999988665  36666665553

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.53  E-value=3.2e-06  Score=81.74  Aligned_cols=128  Identities=22%  Similarity=0.251  Sum_probs=80.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh---hhcCCCC--------ccccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQP--------VTWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~~l~ell  234 (386)
                      ++|+|||.|.||..+|..++ ..|.+|++||++...... ........+   ...+...        .......+++ .+
T Consensus         5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~-~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   81 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLEA-GLATINGNLARQVAKGKISEEARAAALARISTATDLE-DL   81 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-Hh
Confidence            57999999999999999985 678999999998654321 110000000   0111110        0012235665 47


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      ++||+|+.|+|...+.+..+-.+....++++++|+ |+|.-.   ..+|.+.+... -...++..+.
T Consensus        82 ~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~---~s~la~~~~~~-~r~~g~h~~~  144 (292)
T PRK07530         82 ADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSIS---ITRLASATDRP-ERFIGIHFMN  144 (292)
T ss_pred             cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC---HHHHHhhcCCc-ccEEEeeccC
Confidence            89999999999876655554466777889999887 666544   34566665422 2344555554

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.53  E-value=5.5e-06  Score=79.69  Aligned_cols=170  Identities=16%  Similarity=0.265  Sum_probs=107.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +.-++.|.+++....++. .+++++.+.+..     +.+++++..+  ..+++. +++.++-.  |=|-    |+....+
T Consensus        55 k~a~~~Gi~~~~~~l~~~-~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  127 (286)
T PRK14175         55 KAAEKIGMISEIVHLEET-ATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--KDVD----GFHPINI  127 (286)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCCccch
Confidence            345667888876655443 467766655432     3679998765  345554 33333322  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA  181 (386)
                      ..+.      .+.++ +...++.-++.++    ++                     .+.++.|+++.|||.|. +|+.+|
T Consensus       128 g~l~------~~~~~-~~PcTp~ai~~ll----~~---------------------~~i~l~Gk~vvVIGrs~~VG~pla  175 (286)
T PRK14175        128 GKLY------IDEQT-FVPCTPLGIMEIL----KH---------------------ADIDLEGKNAVVIGRSHIVGQPVS  175 (286)
T ss_pred             HhHh------cCCCC-CCCCcHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCchhHHHHH
Confidence            1111      11122 3344444443322    11                     12469999999999998 999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ...|++|+.++++.                            .++.+.+++||+|+.+++.    .++|.++.   
T Consensus       176 ~lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~---  219 (286)
T PRK14175        176 KLL-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV---  219 (286)
T ss_pred             HHH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---
Confidence            998 68899999887532                            3577889999999999985    45677764   


Q ss_pred             CCCCcEEEEcCCCc
Q 016620          262 MKKEAILVNCSRGP  275 (386)
Q Consensus       262 mk~gailIN~aRg~  275 (386)
                      +|+|+++||+|--.
T Consensus       220 vk~gavVIDvGi~~  233 (286)
T PRK14175        220 VKEGAVIIDVGNTP  233 (286)
T ss_pred             cCCCcEEEEcCCCc
Confidence            68999999998744

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.49  E-value=3.4e-06  Score=81.56  Aligned_cols=131  Identities=17%  Similarity=0.229  Sum_probs=84.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~  235 (386)
                      ++|||||.|.||..+|..++ ..|.+|+.||+++.....  +.....-..+.+.+...        .......++ +.++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~   83 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFA   83 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhC
Confidence            38999999999999999985 679999999998765322  11111000111111110        011134577 4579


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~m-k~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~  301 (386)
                      .||+|+-|+|.+.+.+.-+-.+.-+.+ +++++|++.+.+-.  ..++..+++. .-...++..|.+
T Consensus        84 ~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~--~~~la~~~~~-~~r~~g~hf~~P  147 (286)
T PRK07819         84 DRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIP--IMKLAAATKR-PGRVLGLHFFNP  147 (286)
T ss_pred             CCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCC--HHHHHhhcCC-CccEEEEecCCC
Confidence            999999999999888877766555555 88999988766544  3445555543 223556666653

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.48  E-value=5.3e-06  Score=79.84  Aligned_cols=119  Identities=22%  Similarity=0.271  Sum_probs=76.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--HhhhhhhhhhcCCCCc--------cccccCCHHHHhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VTAYGQFLKANGEQPV--------TWKRASSMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~  235 (386)
                      ++|+|||.|.||.++|..++ ..|.+|++||++........  ....-+.+.+.+....        +.....+.++ ++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-~~   81 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCA-VAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLDD-LK   81 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hc
Confidence            47999999999999999984 67999999998876432100  0000000111111000        1112345554 78


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +||+|+.|+|-+.+.+.-+-++..+.++++++++....|  +....|.+.+..
T Consensus        82 ~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~  132 (282)
T PRK05808         82 DADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKR  132 (282)
T ss_pred             cCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCC
Confidence            999999999977776655556677778999988544444  555678877753

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.46  E-value=1.4e-05  Score=82.55  Aligned_cols=108  Identities=22%  Similarity=0.257  Sum_probs=71.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh-----hhcCCCCccccccCC-------
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASS-------  229 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-------  229 (386)
                      .+.+.++.|+|+|.+|...++.+ +.+|++|.++|++.... + ....++...     .+.+....++....+       
T Consensus       161 ~vp~akVlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rl-e-~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~  237 (511)
T TIGR00561       161 KVPPAKVLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-E-QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE  237 (511)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence            35678999999999999999986 79999999999987642 2 111111100     000100011111111       


Q ss_pred             ---HHHHhhhCCEEEEcc--CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          230 ---MDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       230 ---l~ell~~aDiVvl~l--Plt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                         +.+.++++|+|+.++  |..+ .-.++.++.++.||+|+++||++-
T Consensus       238 ~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       238 MELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence               455678899998887  3321 246889999999999999999864

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.45  E-value=7.1e-07  Score=79.52  Aligned_cols=81  Identities=20%  Similarity=0.287  Sum_probs=68.0

Q ss_pred             ccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~I-G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++.|++|.|||.|.+ |+.+|+.| +..|++|++.+|+.                            .++.+.+.+||+|
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDiV   91 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADIV   91 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCEE
Confidence            599999999999996 88899998 67899999888753                            2567789999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd  278 (386)
                      +.+.+..    ++|..+.   ++++.++||+|...-+|
T Consensus        92 Isat~~~----~ii~~~~---~~~~~viIDla~prdvd  122 (168)
T cd01080          92 IVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             EEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence            9999842    3788875   57899999999988777

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.45  E-value=1.4e-06  Score=94.77  Aligned_cols=138  Identities=17%  Similarity=0.152  Sum_probs=91.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|||+|.||+++|+.+ +..|  .+|++||++......         ....+..   .....+++++++++|+|++|
T Consensus         4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~~---------a~~~g~~---~~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLEL---------AVSLGVI---DRGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHHH---------HHHCCCC---CcccCCHHHHhcCCCEEEEC
Confidence            6899999999999999997 5566  589999998654211         1111211   11235678889999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------CCCCCCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMK  313 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~~~L~~~~  313 (386)
                      +|.. ....++ ++....++++.++++++..+..-.+.+.+.+..     ....+..+.|..          ++.|++-.
T Consensus        71 vp~~-~~~~vl-~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~-----~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~  143 (735)
T PRK14806         71 VPVL-AMEKVL-ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGE-----LPAGFVPGHPIAGSEKSGVHAANADLFRNH  143 (735)
T ss_pred             CCHH-HHHHHH-HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccc-----cCCeEEecCCcCcCCcchhhhhhhHHhCCC
Confidence            9953 334443 344456788999999988553223444444432     124556667753          12577888


Q ss_pred             CeEEcCCCCC
Q 016620          314 NAIVVPHIAS  323 (386)
Q Consensus       314 nvilTPHia~  323 (386)
                      +++++|+-..
T Consensus       144 ~~~~~~~~~~  153 (735)
T PRK14806        144 KVILTPLAET  153 (735)
T ss_pred             eEEEECCCCC
Confidence            8999997543

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.45  E-value=3.9e-06  Score=80.50  Aligned_cols=130  Identities=18%  Similarity=0.293  Sum_probs=80.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|||+|.||+++|+.|+ ..|  .+|++||++.......         ...+..    ....+.+++. +||+|++|
T Consensus         1 m~I~iIG~G~mG~sla~~l~-~~g~~~~v~~~d~~~~~~~~~---------~~~g~~----~~~~~~~~~~-~aD~Vila   65 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALK-EKGLISKVYGYDHNELHLKKA---------LELGLV----DEIVSFEELK-KCDVIFLA   65 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHH-hcCCCCEEEEEcCCHHHHHHH---------HHCCCC----cccCCHHHHh-cCCEEEEe
Confidence            37999999999999999984 444  5899999976542211         111211    1124667765 49999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-------C---CCCCCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-------K---PGLSEMK  313 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-------~---~~L~~~~  313 (386)
                      +|.. .+..++ .+... +++++++++++.-    ...+.+.+... ..+   .+....|..       .   ..|++-.
T Consensus        66 vp~~-~~~~~~-~~l~~-l~~~~iv~d~gs~----k~~i~~~~~~~-~~~---~~v~~hPmaG~e~~Gp~~a~~~l~~g~  134 (275)
T PRK08507         66 IPVD-AIIEIL-PKLLD-IKENTTIIDLGST----KAKIIESVPKH-IRK---NFIAAHPMAGTENSGPKAAIKGLYEGK  134 (275)
T ss_pred             CcHH-HHHHHH-HHHhc-cCCCCEEEECccc----hHHHHHHHHHh-cCC---CEEecCCcCcCchhhHHhccHHHhCCC
Confidence            9963 334444 45556 8899999998663    34455565543 111   233334541       1   1255555


Q ss_pred             CeEEcCCC
Q 016620          314 NAIVVPHI  321 (386)
Q Consensus       314 nvilTPHi  321 (386)
                      .++++|.-
T Consensus       135 ~~il~~~~  142 (275)
T PRK08507        135 VVVLCDVE  142 (275)
T ss_pred             eEEEecCC
Confidence            67888853

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.44  E-value=4.4e-06  Score=87.02  Aligned_cols=131  Identities=22%  Similarity=0.307  Sum_probs=87.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP--------VTWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (386)
                      ++|||||+|.||+.||..++ ..|.+|++||++.......  ... .+. .+.+.+...        .......++++ +
T Consensus         8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~-~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~   84 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLA-KLVEKGKLTAEQADAALARLRPVEALAD-L   84 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence            57999999999999999985 5699999999987653221  111 110 011112100        01223457766 5


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (386)
                      ++||+|+-++|.+.+.+..+-.+.-..++++++| +|+|.-.+   .+|.++++. .=...++..|.+-|
T Consensus        85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~  150 (507)
T PRK08268         85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP  150 (507)
T ss_pred             CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence            6999999999998888877766666667899999 59988665   467666653 22356777777544

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.42  E-value=6.4e-07  Score=76.90  Aligned_cols=102  Identities=22%  Similarity=0.289  Sum_probs=72.0

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      +++|+++.|+|.|.+|+.++..| ...|++ |++++|+.... ++..+.+       +..........++.+.+.++|+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~ra-~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div   79 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPERA-EALAEEF-------GGVNIEAIPLEDLEEALQEADIV   79 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHHH-HHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHHH-HHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence            68999999999999999999998 577886 99999987542 2221111       11222233456777889999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCc-EEEEcCCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGP  275 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~ga-ilIN~aRg~  275 (386)
                      +.++|..   ...+.++.++..++.. ++++.|...
T Consensus        80 I~aT~~~---~~~i~~~~~~~~~~~~~~v~Dla~Pr  112 (135)
T PF01488_consen   80 INATPSG---MPIITEEMLKKASKKLRLVIDLAVPR  112 (135)
T ss_dssp             EE-SSTT---STSSTHHHHTTTCHHCSEEEES-SS-
T ss_pred             EEecCCC---CcccCHHHHHHHHhhhhceeccccCC
Confidence            9999953   3378888888766544 888887643

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.42  E-value=2.8e-06  Score=73.85  Aligned_cols=114  Identities=18%  Similarity=0.224  Sum_probs=76.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.+++++|+|.|.||+.+++.|+ ..| .+|.++|++.... +++.+.+       +... ......+++++++++|+|
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l~-~~g~~~v~v~~r~~~~~-~~~~~~~-------~~~~-~~~~~~~~~~~~~~~Dvv   85 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYALA-ELGAAKIVIVNRTLEKA-KALAERF-------GELG-IAIAYLDLEELLAEADLI   85 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHH-------hhcc-cceeecchhhccccCCEE
Confidence            467889999999999999999984 564 7899999986543 2211111       1000 001235677778999999


Q ss_pred             EEccCCChh-hh-hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620          241 SLHPVLDKT-TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       241 vl~lPlt~~-t~-~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~  290 (386)
                      ++++|.... .. ..+...   .++++.+++|++..+.. + .|.+.+++..
T Consensus        86 i~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~-~-~l~~~~~~~g  132 (155)
T cd01065          86 INTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLE-T-PLLKEARALG  132 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCC-C-HHHHHHHHCC
Confidence            999997553 11 223322   36899999999886543 3 7777777653

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.42  E-value=1.3e-06  Score=83.72  Aligned_cols=112  Identities=17%  Similarity=0.174  Sum_probs=77.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ...+|||||+|.||+.+++.|.+. .++++. ++|+++... +.+.+.+       +.    ...+.++++++.++|+|+
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vv   72 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVV   72 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEE
Confidence            347899999999999999988543 578876 678876442 2211111       10    113468999999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      +|+|..  +..-+....   ++.|.-++..+.|.+.+.++|.++.+++...
T Consensus        73 i~tp~~--~h~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         73 EAAPAS--VLRAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             ECCCcH--HHHHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            999953  232222333   4567666777899888899999999886543

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.40  E-value=5.4e-06  Score=84.15  Aligned_cols=118  Identities=17%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh--------hhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      ++|||||+|.||..+|..|+ ..|.+|++||++...... .....        .+.+.+....+ ......++++++++|
T Consensus         1 mkI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~~~~v~~-l~~g~~~~~e~~l~~~~~~~~~~g-~l~~~~~~~~~~~~a   77 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLA-DLGHEVTGVDIDQEKVDK-LNKGKSPIYEPGLDELLAKALAAG-RLRATTDYEDAIRDA   77 (411)
T ss_pred             CEEEEECCCchhHHHHHHHH-hcCCeEEEEECCHHHHHH-hhcCCCCCCCCCHHHHHHHhhhcC-CeEEECCHHHHHhhC
Confidence            37999999999999999984 678999999997754221 10000        00000000000 022345788889999


Q ss_pred             CEEEEccCCChh------hhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620          238 DVISLHPVLDKT------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (386)
Q Consensus       238 DiVvl~lPlt~~------t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL  286 (386)
                      |+|++|+|....      ...+.  .....+.+++|.++|+.|.-.+--.+.+.+.+
T Consensus        78 dvvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~  134 (411)
T TIGR03026        78 DVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI  134 (411)
T ss_pred             CEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence            999999996432      11121  24466678999999999876655556665433

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.39  E-value=3.2e-06  Score=83.18  Aligned_cols=115  Identities=20%  Similarity=0.241  Sum_probs=75.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh-hcC-CCCccccccCCHHHHhhhCCEEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANG-EQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .++|+|||+|.||..+|..|+ ..|.+|.+|+|+.... +..... ..... ..+ ..+.......+++++++.+|+|++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~~~~~-~~i~~~-~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~   80 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAA-SKGVPVRLWARRPEFA-AALAAE-RENREYLPGVALPAELYPTADPEEALAGADFAVV   80 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHh-CcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEE
Confidence            358999999999999999984 6789999999976432 111100 00000 001 001112234688888999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ  288 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg-~~vd--e~aL~~aL~~  288 (386)
                      ++|.. .+     ++.++.++++.++|+++.| ..-+  ...+.+.+.+
T Consensus        81 ~v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         81 AVPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             ECchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            99964 22     5666889999999999997 4332  4566666644

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.38  E-value=1.9e-06  Score=82.85  Aligned_cols=107  Identities=18%  Similarity=0.258  Sum_probs=72.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+++|||||+|+||.++|+.|. .-|    .+|++++|+.....+.+...+       +     .....+..+++.+||+
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------g-----~~~~~~~~e~~~~aDv   68 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY-------G-----VKGTHNKKELLTDANI   68 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc-------C-----ceEeCCHHHHHhcCCE
Confidence            3568999999999999999885 444    689999987644333221111       1     1224577888899999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      |++|+|. .+....+ .+....++++.++|++.-|  +..+.|.+.+.
T Consensus        69 Vilav~p-~~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~  112 (279)
T PRK07679         69 LFLAMKP-KDVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ  112 (279)
T ss_pred             EEEEeCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            9999994 3344444 4455567889999998554  35566666553

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.37  E-value=6.9e-06  Score=79.46  Aligned_cols=130  Identities=17%  Similarity=0.249  Sum_probs=81.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhh----hhhhhhhcCCCC--------ccccccCCHH
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA----YGQFLKANGEQP--------VTWKRASSMD  231 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~~----~~~~~~~~~~~~--------~~~~~~~~l~  231 (386)
                      ++|+|||.|.||..+|..++ ..|.+|++||++......  +....    ... ....+...        .......++ 
T Consensus         4 ~~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~-   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVSEEILKNAMELIESGPYGLRN-LVEKGKMSEDEAKAIMARIRTSTSY-   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHH-HHHcCCCCHHHHHHHHhCcEeeCCH-
Confidence            57999999999999999984 679999999998754221  00000    000 00011100        001122345 


Q ss_pred             HHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (386)
Q Consensus       232 ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~  301 (386)
                      +.+++||+|+.|+|...+...-+-++.-+.++++++|++.+.|-  ....+.+.+.. .-...++..|.+
T Consensus        81 ~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~-~~r~ig~hf~~P  147 (291)
T PRK06035         81 ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALER-KDRFIGMHWFNP  147 (291)
T ss_pred             HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCC-cccEEEEecCCC
Confidence            56789999999999766544444455556788999998877763  55667776653 234455555543

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.35  E-value=5e-06  Score=86.42  Aligned_cols=133  Identities=20%  Similarity=0.260  Sum_probs=88.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC--------ccccccCCHHHH
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP--------VTWKRASSMDEV  233 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~--------~~~~~~~~l~el  233 (386)
                      =++|||||.|.||..||..++ ..|.+|++||++.......  ... .+.. +...+...        .......++++ 
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~-~~~~G~~~~~~~~~~~~~i~~~~~~~~-   81 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNS-LVTKGKLTAEECERTLKRLIPVTDLHA-   81 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHhccEEeCCHHH-
Confidence            357999999999999999985 6799999999987653211  000 1100 11112110        01223467766 


Q ss_pred             hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC
Q 016620          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (386)
Q Consensus       234 l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~  304 (386)
                      +++||+|+.|+|.+.+.+..+-.+.-..++++++|. |+|.-.+   ..|.++++. .-...++..|.+-|.
T Consensus        82 l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Papv  149 (503)
T TIGR02279        82 LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAPV  149 (503)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCcccc
Confidence            569999999999888877776666667788888876 7766444   567777753 356778887775553

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.34  E-value=1.1e-05  Score=83.95  Aligned_cols=120  Identities=15%  Similarity=0.120  Sum_probs=75.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhhhhhhh---hhcCCCCc-cccccCCHHHHhhhCCE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFL---KANGEQPV-TWKRASSMDEVLREADV  239 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~~~~~~~---~~~~~~~~-~~~~~~~l~ell~~aDi  239 (386)
                      ++|||||.|.||.++|..|+ ..|.+|++||+++.....  ..........   ........ ......++++++++||+
T Consensus         5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~   83 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADW   83 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCE
Confidence            47999999999999999985 669999999998765321  1000000000   00000000 12335688899999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      |+.++|...+.+..+-.+.-..++++++|... ..++ ....|.+.+..
T Consensus        84 Vieavpe~~~vk~~l~~~l~~~~~~~~iI~Ss-Tsgi-~~s~l~~~~~~  130 (495)
T PRK07531         84 IQESVPERLDLKRRVLAEIDAAARPDALIGSS-TSGF-LPSDLQEGMTH  130 (495)
T ss_pred             EEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEc-CCCC-CHHHHHhhcCC
Confidence            99999987765654445555667888765444 4343 35577766643

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.33  E-value=2.7e-05  Score=75.99  Aligned_cols=120  Identities=21%  Similarity=0.214  Sum_probs=71.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCCC--------ccccccCCHHHHhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~  235 (386)
                      ++|+|||.|.||.++|..|+ ..|.+|++||++.......  .....-..+...+...        .......++.++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la-~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~   81 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFA-RAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA   81 (308)
T ss_pred             cEEEEECccHHHHHHHHHHH-HCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence            47999999999999999984 6799999999986532110  0000000011111110        01123468889999


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +||+|+.|+|...+....+-.+.-+..++..++...+. . .....+.+.+..
T Consensus        82 ~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts-~-~~~~~la~~~~~  132 (308)
T PRK06129         82 DADYVQESAPENLELKRALFAELDALAPPHAILASSTS-A-LLASAFTEHLAG  132 (308)
T ss_pred             CCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC-C-CCHHHHHHhcCC
Confidence            99999999997655444333333333455555543333 2 345667777753

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.33  E-value=6.3e-06  Score=83.05  Aligned_cols=141  Identities=13%  Similarity=0.165  Sum_probs=85.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh----hhhhhhhcC-CCCccccccCCHHHHhhhCCEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANG-EQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++|+|+|+|.||..+|..++  .|.+|++||++..... ...+.    +.+.+.+.. ..........+..+++++||+|
T Consensus         1 mkI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~kv~-~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v   77 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA--QNHEVVALDILPSRVA-MLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYV   77 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHHHH-HHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence            37999999999999998764  4899999999876522 11110    000000000 0011122223467788999999


Q ss_pred             EEccCCChhh-------hhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC----C
Q 016620          241 SLHPVLDKTT-------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK----P  307 (386)
Q Consensus       241 vl~lPlt~~t-------~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~----~  307 (386)
                      ++|+|..-+-       ..+.  -+...+ +++|.++|+.|.-.+=-.+.+.+.+.+.   +.   +|.+|.+..    .
T Consensus        78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~---~v---~~~PE~l~~G~a~~  150 (388)
T PRK15057         78 IIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTE---NI---IFSPEFLREGKALY  150 (388)
T ss_pred             EEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcC---cE---EECcccccCCcccc
Confidence            9999965211       1111  123344 7999999999998887778888777643   22   246666532    2


Q ss_pred             CCCCCCCeE
Q 016620          308 GLSEMKNAI  316 (386)
Q Consensus       308 ~L~~~~nvi  316 (386)
                      .++..|.|+
T Consensus       151 d~~~p~rvv  159 (388)
T PRK15057        151 DNLHPSRIV  159 (388)
T ss_pred             cccCCCEEE
Confidence            344545554

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.32  E-value=2e-05  Score=76.87  Aligned_cols=118  Identities=13%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh---hhhhhhcCCC---CccccccCCHHHHhhhCCE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY---GQFLKANGEQ---PVTWKRASSMDEVLREADV  239 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~l~ell~~aDi  239 (386)
                      ++|+|||.|.||.++|..|+ ..|.+|++||++...... .....   ..........   ........++++.+++||+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~-~~g~~V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDl   82 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFA-RKGLQVVLIDVMEGALER-ARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADL   82 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHHHH-HHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCE
Confidence            57999999999999999984 678999999987654211 11100   0000000000   0001223578888999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      |++|+|...+...-+-.+.-..++++++++..+.|  +....|.+.+.
T Consensus        83 Vi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         83 VIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            99999976543333334444456777777544444  23557776664

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.31  E-value=2.1e-06  Score=82.48  Aligned_cols=103  Identities=20%  Similarity=0.272  Sum_probs=71.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ++|||||+|+||+++++.|. .-|    .+|+++||+.... +...+       ..+     .....+..+++.+||+|+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~~-~~l~~-------~~g-----~~~~~~~~e~~~~aDiIi   68 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSNL-KNASD-------KYG-----ITITTNNNEVANSADILI   68 (272)
T ss_pred             CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHHH-HHHHH-------hcC-----cEEeCCcHHHHhhCCEEE
Confidence            47999999999999999874 334    3799999976542 21111       111     123457788899999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL  286 (386)
                      +|+|. .....++ ++.-..++++.++|++.-|-  +.+.|.+.+
T Consensus        69 LavkP-~~~~~vl-~~l~~~~~~~~lvISi~AGi--~i~~l~~~l  109 (272)
T PRK12491         69 LSIKP-DLYSSVI-NQIKDQIKNDVIVVTIAAGK--SIKSTENEF  109 (272)
T ss_pred             EEeCh-HHHHHHH-HHHHHhhcCCcEEEEeCCCC--cHHHHHHhc
Confidence            99994 5555555 44445568889999998774  455666555

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.30  E-value=2.8e-05  Score=74.66  Aligned_cols=169  Identities=17%  Similarity=0.240  Sum_probs=105.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++....++ ..+++|+...+..     +.|++++..+  ..+++. .++.++-.  |=|-    |+....+
T Consensus        61 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  133 (287)
T PRK14176         61 KACERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--KDAD----GFHPYNM  133 (287)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccc----ccChhhh
Confidence            44566788887766544 3467766654432     4689998765  345443 33333322  2221    1111111


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA  181 (386)
                            |-...+.+ .+...++.-++.++    +                     +.+.++.|+++.|||.|. +|+.+|
T Consensus       134 ------g~l~~g~~-~~~PcTp~av~~ll----~---------------------~~~i~l~Gk~vvViGrs~iVGkPla  181 (287)
T PRK14176        134 ------GKLMIGDE-GLVPCTPHGVIRAL----E---------------------EYGVDIEGKNAVIVGHSNVVGKPMA  181 (287)
T ss_pred             ------hhHhcCCC-CCCCCcHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCcccHHHHH
Confidence                  11111222 23445555444322    1                     012479999999999999 999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ...|+.|.+++..                            ..++.+..++||+|+.++.-    .+++..+   .
T Consensus       182 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvv~AvG~----p~~i~~~---~  225 (287)
T PRK14176        182 AML-LNRNATVSVCHVF----------------------------TDDLKKYTLDADILVVATGV----KHLIKAD---M  225 (287)
T ss_pred             HHH-HHCCCEEEEEecc----------------------------CCCHHHHHhhCCEEEEccCC----ccccCHH---H
Confidence            998 5789999988742                            13678889999999998864    4567666   4


Q ss_pred             CCCCcEEEEcCCC
Q 016620          262 MKKEAILVNCSRG  274 (386)
Q Consensus       262 mk~gailIN~aRg  274 (386)
                      +|+|+++||+|--
T Consensus       226 vk~gavVIDvGin  238 (287)
T PRK14176        226 VKEGAVIFDVGIT  238 (287)
T ss_pred             cCCCcEEEEeccc
Confidence            6899999999863

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.28  E-value=3.5e-06  Score=82.28  Aligned_cols=105  Identities=16%  Similarity=0.231  Sum_probs=68.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh--hcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK--ANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|||+|.||..+|..|+ ..|.+|.+|+++.... +...... ....  .....+.+.....+++++++.||+|++|
T Consensus         2 mkI~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   78 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLA-RNGHDVTLWARDPEQA-AEINADR-ENPRYLPGIKLPDNLRATTDLAEALADADLILVA   78 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHHcC-cccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEe
Confidence            47999999999999999985 6789999999976432 1111000 0000  0000001122346788889999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +|. ..+..++ .+....+++++++|+++.|-
T Consensus        79 v~~-~~~~~v~-~~l~~~~~~~~~vi~~~ngv  108 (325)
T PRK00094         79 VPS-QALREVL-KQLKPLLPPDAPIVWATKGI  108 (325)
T ss_pred             CCH-HHHHHHH-HHHHhhcCCCCEEEEEeecc
Confidence            996 4555555 34556678899999997553

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.22  E-value=1.1e-05  Score=77.62  Aligned_cols=105  Identities=17%  Similarity=0.268  Sum_probs=70.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .+|+|||+|.||+++++.|. ..|    .+|++|+++...........+       .    ......+..+++.++|+|+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~~-------~----~~~~~~~~~e~~~~aDvVi   69 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDKY-------P----TVELADNEAEIFTKCDHSF   69 (277)
T ss_pred             CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHHc-------C----CeEEeCCHHHHHhhCCEEE
Confidence            47999999999999999874 445    689999986543222211110       0    0112357788899999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL  286 (386)
                      +|+|. .....++ .+....++++..+|.+.-|  +..+.|.+.+
T Consensus        70 lavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~  110 (277)
T PRK06928         70 ICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEIT  110 (277)
T ss_pred             EecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHc
Confidence            99993 2333333 3344456778899998777  5666777655

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.21  E-value=7e-05  Score=71.95  Aligned_cols=170  Identities=18%  Similarity=0.257  Sum_probs=107.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++....++. .+++|+.+.+..     ..+++++..+  ..+++.. ++.++-.  |=|-    |+....+
T Consensus        54 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  126 (285)
T PRK14191         54 KACERVGMDSDLHTLQEN-TTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--KDVD----GFHPLNI  126 (285)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccChhhH
Confidence            445667888876655543 466666644432     3689998765  4555543 3333322  2221    2211111


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      ..+      ..+-+ .+...++.-++.++    ++                     .+.++.|++|.|||-| .+|+.+|
T Consensus       127 g~l------~~g~~-~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvVvGrs~~VG~Pla  174 (285)
T PRK14191        127 GKL------CSQLD-GFVPATPMGVMRLL----KH---------------------YHIEIKGKDVVIIGASNIVGKPLA  174 (285)
T ss_pred             HHH------hcCCC-CCCCCcHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence            111      12222 23455555554322    21                     1247999999999999 9999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-|+.|.+++.+.                            .++.+.+++||+|+.+++.    .+++..+.+  
T Consensus       175 ~lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG~----p~~i~~~~v--  219 (285)
T PRK14191        175 MLM-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVGK----PDLIKASMV--  219 (285)
T ss_pred             HHH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecCC----CCcCCHHHc--
Confidence            998 57899999875422                            2567889999999999963    567887765  


Q ss_pred             CCCCcEEEEcCCCc
Q 016620          262 MKKEAILVNCSRGP  275 (386)
Q Consensus       262 mk~gailIN~aRg~  275 (386)
                       |+|+++||+|--.
T Consensus       220 -k~GavVIDvGi~~  232 (285)
T PRK14191        220 -KKGAVVVDIGINR  232 (285)
T ss_pred             -CCCcEEEEeeccc
Confidence             8999999998644

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.20  E-value=2.9e-05  Score=75.23  Aligned_cols=114  Identities=15%  Similarity=0.194  Sum_probs=78.7

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccH
Q 016620          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (386)
Q Consensus       177 G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~  256 (386)
                      |+.||++|+ .-|.+|++||++.....+...+    .+...|     .....+..+++++||+|++|+|..+.+..++ .
T Consensus        32 GspMArnLl-kAGheV~V~Drnrsa~e~e~~e----~LaeaG-----A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~  100 (341)
T TIGR01724        32 GSRMAIEFA-MAGHDVVLAEPNREFMSDDLWK----KVEDAG-----VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R  100 (341)
T ss_pred             HHHHHHHHH-HCCCEEEEEeCChhhhhhhhhH----HHHHCC-----CeecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence            899999984 6799999999876532111000    112222     2235688999999999999999888888887 5


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-cceEEeeccCCCCC
Q 016620          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPY  304 (386)
Q Consensus       257 ~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~-i~gaalDV~~~EP~  304 (386)
                      ..++.+++|+++||+|+   ++.+.++..|+..- +..--+-|..-+|-
T Consensus       101 GLaa~L~~GaIVID~ST---IsP~t~~~~~e~~l~~~r~d~~v~s~HP~  146 (341)
T TIGR01724       101 TIIEHVPENAVICNTCT---VSPVVLYYSLEKILRLKRTDVGISSMHPA  146 (341)
T ss_pred             HHHhcCCCCCEEEECCC---CCHHHHHHHHHHHhhcCccccCeeccCCC
Confidence            68899999999999977   55577777776511 12233445555554

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.20  E-value=6.3e-06  Score=72.53  Aligned_cols=104  Identities=21%  Similarity=0.295  Sum_probs=64.6

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh--hcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK--ANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      +|+|+|.|+.|.++|..|+ .-|.+|..|+|+.... +...+ ......  ..-..+.......+++++++++|+|++++
T Consensus         1 KI~ViGaG~~G~AlA~~la-~~g~~V~l~~~~~~~~-~~i~~-~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~Iiiav   77 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLA-DNGHEVTLWGRDEEQI-EEINE-TRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAV   77 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHH-HCTEEEEEETSCHHHH-HHHHH-HTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S
T ss_pred             CEEEECcCHHHHHHHHHHH-HcCCEEEEEeccHHHH-HHHHH-hCCCCCCCCCcccCcccccccCHHHHhCcccEEEecc
Confidence            6899999999999999984 7789999999986432 11111 000000  00001112223578999999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |..  ...-+-++....++++..+|++..|=
T Consensus        78 Ps~--~~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   78 PSQ--AHREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             -GG--GHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             cHH--HHHHHHHHHhhccCCCCEEEEecCCc
Confidence            952  23333456666778999999998763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.18  E-value=0.00015  Score=75.28  Aligned_cols=227  Identities=18%  Similarity=0.189  Sum_probs=119.1

Q ss_pred             HHHHHhCCCeEEEecCCC--CCCCHHHHHHH---h-----cCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccccc
Q 016620           30 INLLIEQDCRVEICTQKK--TILSVEDIIAL---I-----GDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNN   99 (386)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~--~~~~~~e~~~~---~-----~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~   99 (386)
                      .+.|.+.|+++.+-....  ..++.++..+.   +     .+++|.|+.- ..+ +.+.++.+++ |-.++....-..|.
T Consensus        23 v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV-~~P-~~~e~~~l~~-g~~li~~l~p~~~~   99 (509)
T PRK09424         23 VEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKV-NAP-SDDEIALLRE-GATLVSFIWPAQNP   99 (509)
T ss_pred             HHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEe-CCC-CHHHHHhcCC-CCEEEEEeCcccCH
Confidence            566777788876644321  22344444321   0     0136766632 222 3455677765 43455555554454


Q ss_pred             cChhHHhhCCcEEecCCCCC----------chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcc-cccccCCCeE
Q 016620          100 VDVNAANKYGIAVGNTPGVL----------TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-VGNLLKGQTV  168 (386)
Q Consensus       100 id~~~~~~~gI~v~n~~~~~----------~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~-~g~~l~g~~v  168 (386)
                      =-++.+.++||.+..-.-.-          =.++|+.+=      .|-+..+.+.+  +.   .++... .-....|.+|
T Consensus       100 ~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~~~--~~---~~~g~~taaG~~pg~kV  168 (509)
T PRK09424        100 ELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAHEF--GR---FFTGQITAAGKVPPAKV  168 (509)
T ss_pred             HHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHHHh--cc---cCCCceeccCCcCCCEE
Confidence            45677788998887621111          112222221      11111111111  11   011000 0013569999


Q ss_pred             EEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh---hhc--CCCCcccccc--CC--------HHHH
Q 016620          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KAN--GEQPVTWKRA--SS--------MDEV  233 (386)
Q Consensus       169 gIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~--~~--------l~el  233 (386)
                      .|+|.|.+|...+..+ +.+|++|+++|++.....  ..+.++...   ...  +....++...  .+        +.+.
T Consensus       169 lViGaG~iGL~Ai~~A-k~lGA~V~a~D~~~~rle--~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~  245 (509)
T PRK09424        169 LVIGAGVAGLAAIGAA-GSLGAIVRAFDTRPEVAE--QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ  245 (509)
T ss_pred             EEECCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhc
Confidence            9999999999999985 799999999999875432  122221110   000  0000000000  01        1222


Q ss_pred             hhhCCEEEEccCCChh-hhhcccHHHHhcCCCCcEEEEcCC
Q 016620          234 LREADVISLHPVLDKT-TYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       234 l~~aDiVvl~lPlt~~-t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +..+|+|+.|...... ...++.++.++.||+|++++++|-
T Consensus       246 ~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        246 AKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             cCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            3579999999864221 234567899999999999999974

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.17  E-value=2.1e-06  Score=79.34  Aligned_cols=134  Identities=14%  Similarity=0.202  Sum_probs=90.0

Q ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHH-hcCCcEEEE-EcCC
Q 016620          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLY  198 (386)
Q Consensus       121 ~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~-~d~~  198 (386)
                      ...++|.+..++...|++.            +|.         ...+|+|+|+|.+|+.+++.+. ...|+++.+ +|++
T Consensus        61 ~~~~gy~v~~l~~~~~~~l------------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d  119 (213)
T PRK05472         61 KRGVGYNVEELLEFIEKIL------------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD  119 (213)
T ss_pred             CCCCCeeHHHHHHHHHHHh------------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence            3445689999999888775            121         2357999999999999998531 357888775 5765


Q ss_pred             hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEEEccCCChhh---hhcccHHHHhcCCCCcEEEEcCC
Q 016620          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKTT---YHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVvl~lPlt~~t---~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +... .          ..  ..........++++++++  .|+|++|+|.+...   ..+.......-|...++.+|+.+
T Consensus       120 ~~~~-~----------~~--i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~  186 (213)
T PRK05472        120 PEKI-G----------TK--IGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPE  186 (213)
T ss_pred             hhhc-C----------CE--eCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCC
Confidence            4321 0          00  011112233567888765  99999999976642   22222233344566788899999


Q ss_pred             CcccCHHHHHHHHHc
Q 016620          274 GPVIDEVALVEHLKQ  288 (386)
Q Consensus       274 g~~vde~aL~~aL~~  288 (386)
                      |.+|+.++|..+|..
T Consensus       187 ~~~v~~~~l~~~l~~  201 (213)
T PRK05472        187 DVIVRNVDLTVELQT  201 (213)
T ss_pred             CCEEEEechHHHHHH
Confidence            999999999999974

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.17  E-value=0.00015  Score=69.67  Aligned_cols=171  Identities=16%  Similarity=0.268  Sum_probs=107.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++.+..++. .+++|+.+.+..     +.+++++..+  ..+++.. ++.++-.  |=|-    |+....+
T Consensus        55 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  127 (284)
T PRK14190         55 KAAEKVGIYSELYEFPAD-ITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--KDVD----GFHPINV  127 (284)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccCHhhH
Confidence            445667888877655543 466666654432     3678998754  3455443 3333222  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~-G~IG~~iA  181 (386)
                      ...      ..+.++ +...++.-++.++    ++                     .+.++.|+++.|||- +.+|+++|
T Consensus       128 g~l------~~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla  175 (284)
T PRK14190        128 GRM------MLGQDT-FLPCTPHGILELL----KE---------------------YNIDISGKHVVVVGRSNIVGKPVG  175 (284)
T ss_pred             HHH------hcCCCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence            111      122222 3445555444322    21                     225799999999998 56799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-++.|+.++.+.                            .++++.+++||+|+.++..    .++|+.+.+  
T Consensus       176 ~lL-~~~~atVt~chs~t----------------------------~~l~~~~~~ADIvI~AvG~----p~~i~~~~i--  220 (284)
T PRK14190        176 QLL-LNENATVTYCHSKT----------------------------KNLAELTKQADILIVAVGK----PKLITADMV--  220 (284)
T ss_pred             HHH-HHCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCC----CCcCCHHHc--
Confidence            998 57789999876421                            3678899999999999964    558888776  


Q ss_pred             CCCCcEEEEcCCCcc
Q 016620          262 MKKEAILVNCSRGPV  276 (386)
Q Consensus       262 mk~gailIN~aRg~~  276 (386)
                       |+|+++||+|.-.+
T Consensus       221 -k~gavVIDvGi~~~  234 (284)
T PRK14190        221 -KEGAVVIDVGVNRL  234 (284)
T ss_pred             -CCCCEEEEeecccc
Confidence             89999999987553

>PRK07680 late competence protein ComER; Validated

Probab=98.11  E-value=1.3e-05  Score=76.92  Aligned_cols=104  Identities=19%  Similarity=0.272  Sum_probs=70.8

Q ss_pred             eEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      +|||||+|.||+.+++.|. ..|    .+|.+|+|+.... ......+         .  +.....+..+++..+|+|++
T Consensus         2 ~I~iIG~G~mG~ala~~L~-~~g~~~~~~v~v~~r~~~~~-~~~~~~~---------~--g~~~~~~~~~~~~~aDiVil   68 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFL-ESGAVKPSQLTITNRTPAKA-YHIKERY---------P--GIHVAKTIEEVISQSDLIFI   68 (273)
T ss_pred             EEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCHHHH-HHHHHHc---------C--CeEEECCHHHHHHhCCEEEE
Confidence            6999999999999999874 445    3799999987542 2111100         0  12224577888899999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      |+|. .....++ ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        69 av~p-~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         69 CVKP-LDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             ecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            9983 3344544 4455567888899999854  36666666553

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.10  E-value=9.3e-06  Score=77.14  Aligned_cols=104  Identities=16%  Similarity=0.263  Sum_probs=69.6

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      +|||||+|+||+++++.|. ..|.   .+.+|+|+.... +.+.+.+       +    +.....+..+++.++|+|++|
T Consensus         2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila   68 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA   68 (258)
T ss_pred             eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence            7999999999999999875 3343   367888876542 2211110       0    122346788889999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      +| ......++..  + .++++.++|.++-  -+..+.|.+.+..+
T Consensus        69 v~-p~~~~~vl~~--l-~~~~~~~vis~~a--g~~~~~l~~~~~~~  108 (258)
T PRK06476         69 VR-PQIAEEVLRA--L-RFRPGQTVISVIA--ATDRAALLEWIGHD  108 (258)
T ss_pred             eC-HHHHHHHHHH--h-ccCCCCEEEEECC--CCCHHHHHHHhCCC
Confidence            99 3444555432  3 2578889998773  36777787777543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.08  E-value=2e-05  Score=71.06  Aligned_cols=129  Identities=18%  Similarity=0.234  Sum_probs=78.9

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHhh-hhhhhhhcCCC-------CccccccCCHHHHhhh
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA-YGQFLKANGEQ-------PVTWKRASSMDEVLRE  236 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~~-~~~~~~~~~~~-------~~~~~~~~~l~ell~~  236 (386)
                      +|+|||.|.||+.+|..++ ..|++|..||++......  ++... +....+.....       ........+++++. +
T Consensus         1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            6999999999999999885 679999999998764221  22221 11111111111       01122357888888 9


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      ||+|+=++|-+-+.+.-+-.+.-+.++++++|...+.+  +....|.+.+. ..-...++-.|.
T Consensus        79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~~  139 (180)
T PF02737_consen   79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFFN  139 (180)
T ss_dssp             ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-S
T ss_pred             hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEeccc
Confidence            99999999988777776767777788999887554332  34466666665 334566676664

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=0.00016  Score=69.66  Aligned_cols=171  Identities=21%  Similarity=0.252  Sum_probs=107.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHHH-HHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~l-~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +.-++.|.+++....++. .+++|+.+.+..     +.|++++..+  ..++...+ +..+-.  |=|-    |+..+.+
T Consensus        52 k~~~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  124 (287)
T PRK14173         52 RQAKALGLRSQVEVLPES-TSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL--KDVD----GFHPLNV  124 (287)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----ccChhhh
Confidence            445667888877665443 467776654432     3689998765  44555433 333222  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~-G~IG~~iA  181 (386)
                      ..+.      .+.+ .+...++.-++.++    +                     +.+.++.|+++.|||- +.+|+++|
T Consensus       125 g~l~------~~~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla  172 (287)
T PRK14173        125 GRLW------MGGE-ALEPCTPAGVVRLL----K---------------------HYGIPLAGKEVVVVGRSNIVGKPLA  172 (287)
T ss_pred             HHHh------cCCC-CCCCCCHHHHHHHH----H---------------------HcCCCCCCCEEEEECCCCccHHHHH
Confidence            1111      1112 23445555444332    1                     1125799999999998 56799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-++.|+.+..+.                            .++++..++||+|+.++.-    .+++..+.+  
T Consensus       173 ~lL-~~~~aTVtichs~T----------------------------~~l~~~~~~ADIvIsAvGk----p~~i~~~~v--  217 (287)
T PRK14173        173 ALL-LREDATVTLAHSKT----------------------------QDLPAVTRRADVLVVAVGR----PHLITPEMV--  217 (287)
T ss_pred             HHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEecCC----cCccCHHHc--
Confidence            998 56789998876421                            3688899999999999974    577887664  


Q ss_pred             CCCCcEEEEcCCCcc
Q 016620          262 MKKEAILVNCSRGPV  276 (386)
Q Consensus       262 mk~gailIN~aRg~~  276 (386)
                       |+|+++||+|.-.+
T Consensus       218 -k~GavVIDVGin~~  231 (287)
T PRK14173        218 -RPGAVVVDVGINRV  231 (287)
T ss_pred             -CCCCEEEEccCccc
Confidence             79999999987553

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=0.00046  Score=66.34  Aligned_cols=170  Identities=18%  Similarity=0.284  Sum_probs=106.7

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++....++. .+++|+.+.+..     ..|++++..+  ..+++. +++.++-.  |=|-    |+..+.+
T Consensus        54 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--KDVD----Gl~p~N~  126 (284)
T PRK14170         54 KRTEEAGMKSVLIELPEN-VTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--KDVD----GFHPVNV  126 (284)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence            445667888876655543 466666654432     4689998755  345554 33333322  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      ..+.      ..-+ .+...++.-++.++    +                     +.+.++.||++.|||-+ .+|+++|
T Consensus       127 g~l~------~~~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvVvGrS~iVGkPla  174 (284)
T PRK14170        127 GNLF------IGKD-SFVPCTPAGIIELI----K---------------------STGTQIEGKRAVVIGRSNIVGKPVA  174 (284)
T ss_pred             hHHh------CCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            1111      1112 24455555555433    1                     12357999999999996 5699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-++.|+.+...                            ..++.+..++||+|+.+++.    .+++..+.   
T Consensus       175 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----~~~i~~~~---  218 (284)
T PRK14170        175 QLL-LNENATVTIAHSR----------------------------TKDLPQVAKEADILVVATGL----AKFVKKDY---  218 (284)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHH---
Confidence            998 5678999987542                            13688889999999999974    56787766   


Q ss_pred             CCCCcEEEEcCCCc
Q 016620          262 MKKEAILVNCSRGP  275 (386)
Q Consensus       262 mk~gailIN~aRg~  275 (386)
                      .|+|+++||+|--.
T Consensus       219 vk~GavVIDvGin~  232 (284)
T PRK14170        219 IKPGAIVIDVGMDR  232 (284)
T ss_pred             cCCCCEEEEccCcc
Confidence            47999999998654

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.04  E-value=4.4e-05  Score=71.35  Aligned_cols=165  Identities=18%  Similarity=0.149  Sum_probs=104.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc---EEEEEcCCh----hhH--HHHHHhhhhhhhhhcCCCCccccccCCHH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~---~V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (386)
                      ..+.++++.|+|.|.+|+.+|+.| ...|+   +++.+||+.    ...  +..+...+.   +......  .  ..++.
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~--~~~l~   92 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T--GGTLK   92 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c--cCCHH
Confidence            468899999999999999999988 46787   499999983    211  111111111   1111011  1  13687


Q ss_pred             HHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCC
Q 016620          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE  311 (386)
Q Consensus       232 ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~  311 (386)
                      +.+.++|+|+.+.|     .++++++.++.|+++.++...+..  ..|.-+.+|.+.|. . ...|-.  +.    ...+
T Consensus        93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga-~-i~a~G~--~~----~~~Q  157 (226)
T cd05311          93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGA-D-IVATGR--SD----FPNQ  157 (226)
T ss_pred             HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCC-c-EEEeCC--CC----Cccc
Confidence            88899999999997     467888999999999988888843  34554444444432 1 122221  11    1357


Q ss_pred             CCCeEEcCCCCCCc-----HHHHHHHHHHHHHHHHHHHcCCC
Q 016620          312 MKNAIVVPHIASAS-----KWTREGMATLAALNVLGKIKGYP  348 (386)
Q Consensus       312 ~~nvilTPHia~~t-----~~~~~~~~~~~~~ni~~~~~g~~  348 (386)
                      ..|+++-|-++-..     ....+.|...+++-+-.+..-+.
T Consensus       158 ~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~  199 (226)
T cd05311         158 VNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEV  199 (226)
T ss_pred             cceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccc
Confidence            78999999876522     12235566666677766655443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.03  E-value=2e-05  Score=75.36  Aligned_cols=107  Identities=20%  Similarity=0.383  Sum_probs=68.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|||||+|.||+.+++.+.+. .+++ +.++|++.... +.+.+.       .+     ...+.++++++.++|+|++|
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~-------~~-----~~~~~~~~ell~~~DvVvi~   68 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASK-------TG-----AKACLSIDELVEDVDLVVEC   68 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHh-------cC-----CeeECCHHHHhcCCCEEEEc
Confidence            4799999999999999987432 3566 45688876432 211111       01     12356899999999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde---~aL~~aL~~g~  290 (386)
                      .|.  +...-+..+   .++.|.-++..+.|.+.|.   +.|.++.+++.
T Consensus        69 a~~--~~~~~~~~~---al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g  113 (265)
T PRK13304         69 ASV--NAVEEVVPK---SLENGKDVIIMSVGALADKELFLKLYKLAKENN  113 (265)
T ss_pred             CCh--HHHHHHHHH---HHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcC
Confidence            974  222212222   3445655666777777763   46777776654

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.03  E-value=3e-05  Score=79.67  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCEEEEccCCChhhhh
Q 016620          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH  252 (386)
Q Consensus       176 IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiVvl~lPlt~~t~~  252 (386)
                      ||+.+|+.|+ .-|.+|.+|||++.... .+.+       ..+. ..+...+.+++|+++.   +|+|++++|..+.+..
T Consensus         1 MG~~mA~nL~-~~G~~V~v~nrt~~~~~-~l~~-------~~g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~   70 (459)
T PRK09287          1 MGKNLALNIA-SHGYTVAVYNRTPEKTD-EFLA-------EEGK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA   70 (459)
T ss_pred             CcHHHHHHHH-hCCCeEEEECCCHHHHH-HHHH-------hhCC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence            7999999984 67999999999876532 2111       0010 0123345789998875   8999999999988888


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (386)
Q Consensus       253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (386)
                      ++ ...+..+.+|.++||.+....-|...+.+.+++..+.....=|...++
T Consensus        71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            88 568899999999999999999999999999998877766665666553

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.03  E-value=7.2e-06  Score=69.67  Aligned_cols=93  Identities=22%  Similarity=0.272  Sum_probs=53.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .-.+|||||.|+.|..+++.| +.-|..|.++ +|+.......  .         ...+  .....+++|++..+|++++
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa~~a--~---------~~~~--~~~~~~~~~~~~~aDlv~i   74 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASAERA--A---------AFIG--AGAILDLEEILRDADLVFI   74 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HHHHH--H---------C--T--T-----TTGGGCC-SEEEE
T ss_pred             CccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCccccccc--c---------cccc--cccccccccccccCCEEEE
Confidence            446899999999999999998 5778888765 5554332111  0         0111  1234577899999999999


Q ss_pred             ccCCChhhhhcccHHHHhc--CCCCcEEEEcC
Q 016620          243 HPVLDKTTYHLINKERLAT--MKKEAILVNCS  272 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~--mk~gailIN~a  272 (386)
                      ++|.+ . ..-+.++.-..  .++|.+++-+|
T Consensus        75 avpDd-a-I~~va~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   75 AVPDD-A-IAEVAEQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             -S-CC-H-HHHHHHHHHCC--S-TT-EEEES-
T ss_pred             EechH-H-HHHHHHHHHHhccCCCCcEEEECC
Confidence            99964 2 33333444444  68999988874

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=1.9e-05  Score=75.66  Aligned_cols=170  Identities=15%  Similarity=0.198  Sum_probs=108.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +.-++.|.+.+....++ ..+++|+.+.+..     ..+++++..+  ..+++. +++..+-.  |=|-    |+....+
T Consensus        49 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--KDVD----Gl~~~n~  121 (279)
T PRK14178         49 RACERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--KDVD----GFHPLNL  121 (279)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhH
Confidence            44566788887665544 3467777655432     4689998765  455553 33333322  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      ..+      ..+.++ +...++.-++.++    ++                     .+.+++|++|.|+|.+ ..|+.+|
T Consensus       122 g~l------~~~~~~-~~PcTp~av~~ll----~~---------------------~~i~l~Gk~V~ViGrs~~vGrpla  169 (279)
T PRK14178        122 GRL------VSGLPG-FAPCTPNGIMTLL----HE---------------------YKISIAGKRAVVVGRSIDVGRPMA  169 (279)
T ss_pred             HHH------hCCCCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCccccHHHH
Confidence            111      112222 3444554444322    21                     1247999999999999 9999999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..+|++|..+.++.                            .++++.+++||+|+.+++.    .+++.++.+  
T Consensus       170 ~lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk----~~lv~~~~v--  214 (279)
T PRK14178        170 ALL-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGK----AGFITPDMV--  214 (279)
T ss_pred             HHH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCc----ccccCHHHc--
Confidence            998 68999998876532                            3678889999999999974    277888774  


Q ss_pred             CCCCcEEEEcCCCc
Q 016620          262 MKKEAILVNCSRGP  275 (386)
Q Consensus       262 mk~gailIN~aRg~  275 (386)
                       |+|+++||+|-..
T Consensus       215 -k~GavVIDVgi~~  227 (279)
T PRK14178        215 -KPGATVIDVGINQ  227 (279)
T ss_pred             -CCCcEEEEeeccc
Confidence             9999999998644

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=3.4e-05  Score=74.13  Aligned_cols=78  Identities=17%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+++|+++.|||.|. +|+.+|.+| ...|++|++++++.                            .++++.+++||+
T Consensus       155 i~l~Gk~vvViGrs~iVG~Pla~lL-~~~~atVtv~hs~T----------------------------~~l~~~~~~ADI  205 (285)
T PRK10792        155 IDTYGLNAVVVGASNIVGRPMSLEL-LLAGCTVTVCHRFT----------------------------KNLRHHVRNADL  205 (285)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHH-HHCCCeEEEEECCC----------------------------CCHHHHHhhCCE
Confidence            479999999999999 999999998 57899999886532                            368889999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      |+.+++.    .+++..+   .+|+|+++||+|--
T Consensus       206 vi~avG~----p~~v~~~---~vk~gavVIDvGin  233 (285)
T PRK10792        206 LVVAVGK----PGFIPGE---WIKPGAIVIDVGIN  233 (285)
T ss_pred             EEEcCCC----cccccHH---HcCCCcEEEEcccc
Confidence            9999963    3356664   46899999999853

>PLN00203 glutamyl-tRNA reductase

Probab=97.99  E-value=2.2e-05  Score=81.73  Aligned_cols=102  Identities=18%  Similarity=0.230  Sum_probs=71.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++.+++|+|||.|.||+.+++.| ...|+ +|++++|+.... ..+...+       +.....+....++.+.+.++|+|
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~-------~g~~i~~~~~~dl~~al~~aDVV  333 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEF-------PDVEIIYKPLDEMLACAAEADVV  333 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHh-------CCCceEeecHhhHHHHHhcCCEE
Confidence            47899999999999999999998 57887 799999987542 2221111       10111122235677889999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCC-------CcEEEEcCCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKK-------EAILVNCSRGP  275 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~-------gailIN~aRg~  275 (386)
                      +.|+|   ....+|.++.++.+++       .-+|||.+-..
T Consensus       334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            99987   4566888888887643       23788877643

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=0.00052  Score=65.91  Aligned_cols=170  Identities=17%  Similarity=0.266  Sum_probs=106.9

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++....++ ..+++|+.+.+..     +.|++++..+  ..+++. +++.++-.  |=|-    |+....+
T Consensus        53 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  125 (282)
T PRK14169         53 RRAEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--KDVD----GFSPVSV  125 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--cCcc----cCChhhh
Confidence            44566788887766544 3467766655432     3689998755  345443 33333322  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      ..+.      .+.++ ....++.-++.++    ++                     .+.++.|+++.|||-+ .+|+++|
T Consensus       126 g~l~------~~~~~-~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~iVGkPla  173 (282)
T PRK14169        126 GRLW------ANEPT-VVASTPYGIMALL----DA---------------------YDIDVAGKRVVIVGRSNIVGRPLA  173 (282)
T ss_pred             HHHh------cCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            1111      12222 3455565554332    11                     1257999999999995 5799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-|+.|+.+..+                            ..++++..++||+|+.+++-    .++++.+.   
T Consensus       174 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----p~~i~~~~---  217 (282)
T PRK14169        174 GLM-VNHDATVTIAHSK----------------------------TRNLKQLTKEADILVVAVGV----PHFIGADA---  217 (282)
T ss_pred             HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH---
Confidence            998 5779999887532                            13688899999999999974    56788775   


Q ss_pred             CCCCcEEEEcCCCc
Q 016620          262 MKKEAILVNCSRGP  275 (386)
Q Consensus       262 mk~gailIN~aRg~  275 (386)
                      .|+|+++||+|--.
T Consensus       218 vk~GavVIDvGin~  231 (282)
T PRK14169        218 VKPGAVVIDVGISR  231 (282)
T ss_pred             cCCCcEEEEeeccc
Confidence            57999999998644

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=97.98  E-value=1.6e-05  Score=70.76  Aligned_cols=109  Identities=20%  Similarity=0.270  Sum_probs=68.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCc------------cccccC
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV------------TWKRAS  228 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~  228 (386)
                      .+...+|.|+|.|..|+..++.+ +++|++|..+|.+...... ....+.....-. .....            ......
T Consensus        17 ~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (168)
T PF01262_consen   17 GVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERLRQ-LESLGAYFIEVDYEDHLERKDFDKADYYEHPESYES   94 (168)
T ss_dssp             EE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHHHH-HHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHH
T ss_pred             CCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHHHh-hhcccCceEEEcccccccccccchhhhhHHHHHhHH
Confidence            46778999999999999999996 7999999999987653211 111110000000 00000            011123


Q ss_pred             CHHHHhhhCCEEEEc-cCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          229 SMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       229 ~l~ell~~aDiVvl~-lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      .+.+.++.+|+|+++ +--....-.++.++.++.||+|++++|+|
T Consensus        95 ~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   95 NFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            577889999999864 33345667899999999999999999985

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.98  E-value=3.4e-05  Score=68.08  Aligned_cols=80  Identities=20%  Similarity=0.269  Sum_probs=57.1

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .++.||++.|||-+. +|++++.+| ...|+.|..++.+.                            .++++.+++||+
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~ADI   82 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRADI   82 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSSE
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------CcccceeeeccE
Confidence            479999999999985 999999998 67899999876432                            467888999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      |+.+...    .++|..+   .+|+|+++||++.-..
T Consensus        83 VVsa~G~----~~~i~~~---~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   83 VVSAVGK----PNLIKAD---WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             EEE-SSS----TT-B-GG---GS-TTEEEEE--CEEE
T ss_pred             Eeeeecc----ccccccc---cccCCcEEEecCCccc
Confidence            9999974    5667665   4689999999987554

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=0.00078  Score=64.58  Aligned_cols=186  Identities=17%  Similarity=0.219  Sum_probs=111.7

Q ss_pred             CcEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHH
Q 016620           15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAA   81 (386)
Q Consensus        15 ~~~vlvt~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~   81 (386)
                      ++.++...+-+.+. |    .+..++.|.+++....++ ..+++|+.+.+..     +.+++++..+  ..++.. +++.
T Consensus        34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~  112 (278)
T PRK14172         34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNK  112 (278)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhc
Confidence            34444445444432 2    244566788887665544 3467766644432     3689998764  345544 3333


Q ss_pred             hhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCccccc
Q 016620           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (386)
Q Consensus        82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~  161 (386)
                      ++-.  |=|-    |+....+..+      ...-++ +...++.-++.+    +++                     .+.
T Consensus       113 I~p~--KDVD----Gl~~~n~g~l------~~g~~~-~~PcTp~av~~l----L~~---------------------~~i  154 (278)
T PRK14172        113 IDAN--KDID----CLTFISVGKF------YKGEKC-FLPCTPNSVITL----IKS---------------------LNI  154 (278)
T ss_pred             cCcc--cccC----ccCHhhHHHH------hCCCCC-CcCCCHHHHHHH----HHH---------------------hCC
Confidence            3322  2221    1111111111      111122 344455444422    221                     124


Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++.||++.|||-+ .+|+++|.+| ..-|+.|..++.+.                            .++.+..++||+|
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL-~~~~AtVt~chs~T----------------------------~~l~~~~~~ADIv  205 (278)
T PRK14172        155 DIEGKEVVVIGRSNIVGKPVAQLL-LNENATVTICHSKT----------------------------KNLKEVCKKADIL  205 (278)
T ss_pred             CCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEE
Confidence            7999999999995 5799999998 57789999886421                            3688889999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +.+++.    .++|..+.   .|+|+++||+|--.
T Consensus       206 IsAvGk----p~~i~~~~---ik~gavVIDvGin~  233 (278)
T PRK14172        206 VVAIGR----PKFIDEEY---VKEGAIVIDVGTSS  233 (278)
T ss_pred             EEcCCC----cCccCHHH---cCCCcEEEEeeccc
Confidence            999974    56788766   57999999997533

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.96  E-value=1.8e-05  Score=80.62  Aligned_cols=99  Identities=18%  Similarity=0.253  Sum_probs=70.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|++|+|+|.|.||+.+++.| ...| .+|++++|+.... ..+..       ..+..   .....++.+.+..+|+|
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~-------~~g~~---~i~~~~l~~~l~~aDvV  244 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAK-------ELGGE---AVKFEDLEEYLAEADIV  244 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHH-------HcCCe---EeeHHHHHHHHhhCCEE
Confidence            47899999999999999999998 5788 6899999987542 11111       11111   11224677888999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCC----CCcEEEEcCCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGP  275 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk----~gailIN~aRg~  275 (386)
                      +.|++   .+..+++.+.++.+.    ...+++|.+...
T Consensus       245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr  280 (417)
T TIGR01035       245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPR  280 (417)
T ss_pred             EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            99987   456678888777652    245888887643

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.96  E-value=0.00054  Score=67.62  Aligned_cols=172  Identities=17%  Similarity=0.231  Sum_probs=105.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHh---cC--CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALI---GD--KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~---~~--~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+.+....++ ..+++|+.+.+   .+  +.|++++..+  ..+++. +++..+-.  |=|-    |+....+
T Consensus       126 K~~e~~GI~~~~~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~--KDVD----Gl~p~N~  198 (364)
T PLN02616        126 KACDSVGINSFEVRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE--KDVD----GFHPLNI  198 (364)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence            44566788776555443 34677766555   22  4789998754  455543 33333322  3221    2222221


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      -.+...|    +-++ +...++.-++    .++++                     .+.++.||++.|||-+ .+|+++|
T Consensus       199 G~L~~g~----~~~~-f~PCTp~avi----elL~~---------------------y~i~l~GK~vvVIGRS~iVGkPLa  248 (364)
T PLN02616        199 GRLAMRG----REPL-FVPCTPKGCI----ELLHR---------------------YNVEIKGKRAVVIGRSNIVGMPAA  248 (364)
T ss_pred             HHHhcCC----CCCC-CCCCCHHHHH----HHHHH---------------------hCCCCCCCEEEEECCCccccHHHH
Confidence            1111100    0122 3444454433    22221                     1257999999999995 5799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-++.|..+..+                            ..++++..++||+|+.++..    .+++..+.   
T Consensus       249 ~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~ADIVIsAvGk----p~~i~~d~---  292 (364)
T PLN02616        249 LLL-QREDATVSIVHSR----------------------------TKNPEEITREADIIISAVGQ----PNMVRGSW---  292 (364)
T ss_pred             HHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCcCCHHH---
Confidence            998 5678999987542                            24688899999999999974    66788766   


Q ss_pred             CCCCcEEEEcCCCc
Q 016620          262 MKKEAILVNCSRGP  275 (386)
Q Consensus       262 mk~gailIN~aRg~  275 (386)
                      .|+|+++||+|--.
T Consensus       293 vK~GAvVIDVGIn~  306 (364)
T PLN02616        293 IKPGAVVIDVGINP  306 (364)
T ss_pred             cCCCCEEEeccccc
Confidence            57999999998543

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=0.00059  Score=65.58  Aligned_cols=168  Identities=15%  Similarity=0.220  Sum_probs=104.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++....++. .+++|+.+.+..     +.|++++..+  ..+++. +++.++-.  |=|-    |+....+
T Consensus        56 k~~~~~Gi~~~~~~l~~~-~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  128 (284)
T PRK14177         56 KACHKVGMGSEMIRLKEQ-TTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--KDVD----GVTTLSF  128 (284)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--cccc----cCChhhH
Confidence            445667888877655442 466665544322     4689998765  344443 33333322  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~-G~IG~~iA  181 (386)
                      ..+      ..+.+ .+...++.-++.++    ++                     .+.++.||++.|||- ..+|+++|
T Consensus       129 g~l------~~g~~-~~~PcTp~avi~ll----~~---------------------y~i~l~Gk~vvViGrS~iVGkPla  176 (284)
T PRK14177        129 GKL------SMGVE-TYLPCTPYGMVLLL----KE---------------------YGIDVTGKNAVVVGRSPILGKPMA  176 (284)
T ss_pred             HHH------HcCCC-CCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence            111      11212 23444554444322    21                     125799999999999 45799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-|+.|+.++.+.                            .++.+..++||+|+.++.-    .+++..+.   
T Consensus       177 ~lL-~~~~atVt~chs~T----------------------------~~l~~~~~~ADIvIsAvGk----~~~i~~~~---  220 (284)
T PRK14177        177 MLL-TEMNATVTLCHSKT----------------------------QNLPSIVRQADIIVGAVGK----PEFIKADW---  220 (284)
T ss_pred             HHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEeCCC----cCccCHHH---
Confidence            998 57799999886422                            3688889999999999974    56787766   


Q ss_pred             CCCCcEEEEcCC
Q 016620          262 MKKEAILVNCSR  273 (386)
Q Consensus       262 mk~gailIN~aR  273 (386)
                      .|+|+++||+|-
T Consensus       221 ik~gavVIDvGi  232 (284)
T PRK14177        221 ISEGAVLLDAGY  232 (284)
T ss_pred             cCCCCEEEEecC
Confidence            579999999985

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.95  E-value=7.6e-05  Score=70.05  Aligned_cols=108  Identities=19%  Similarity=0.279  Sum_probs=66.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcC--CcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~f--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+++|||||.|.+|+.+++.+++..  ..+ +++++++.....+.+...+       +     .....++++++.++|+|
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-------~-----~~~~~~~~~~~~~~DiV   70 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY-------N-----VSTTTDWKQHVTSVDTI   70 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-------C-----cEEeCChHHHHhcCCEE
Confidence            3578999999999999999874321  233 7778775333222221111       1     12246788999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      ++++|.. ..+.++ ++.-..++ +.++|+++=|  ++.+.|.+.+..
T Consensus        71 iiavp~~-~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~  113 (245)
T PRK07634         71 VLAMPPS-AHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPK  113 (245)
T ss_pred             EEecCHH-HHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCC
Confidence            9999942 223333 22222334 5688888765  455566666644

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.93  E-value=0.00017  Score=68.71  Aligned_cols=123  Identities=19%  Similarity=0.250  Sum_probs=72.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .++|||||+|+||+++++.|.+ -+    -++++++++....                    ......+..+++.+||+|
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~-~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~V   61 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIEN-SNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDII   61 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHh-CCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEE
Confidence            4689999999999999998753 33    2589998864320                    011235677888899999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH  320 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPH  320 (386)
                      ++|+|. ..+..++. +....++++.++..++-   +..+.+.+.+....   -...+..+.|    -+...-..+++|.
T Consensus        62 ilavkp-~~~~~vl~-~i~~~l~~~~iIS~~aG---i~~~~l~~~~~~~~---~vvr~mPn~p----~~~g~g~t~i~~~  129 (260)
T PTZ00431         62 VLAVKP-DLAGKVLL-EIKPYLGSKLLISICGG---LNLKTLEEMVGVEA---KIVRVMPNTP----SLVGQGSLVFCAN  129 (260)
T ss_pred             EEEeCH-HHHHHHHH-HHHhhccCCEEEEEeCC---ccHHHHHHHcCCCC---eEEEECCCch----hHhcceeEEEEeC
Confidence            999883 34455543 33344555555444433   33555555543221   1223333333    2444456677774

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=0.001  Score=64.09  Aligned_cols=170  Identities=16%  Similarity=0.232  Sum_probs=105.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++....++ ..+++++.+.+..     ..|++++..+  ..+++. +++..+-.  |=|-    |+...++
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----Gl~~~N~  127 (288)
T PRK14171         55 KNAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--KDID----GFHPLNV  127 (288)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cccc----cCCccch
Confidence            44566788887665543 3467777655432     4689998765  445544 33333322  2221    2211111


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                            |-........+...++.-++    .++++                     .+.++.||++.|||-+ .+|+++|
T Consensus       128 ------g~l~~g~~~~~~PcTp~av~----~lL~~---------------------y~i~l~GK~vvViGrS~iVGkPla  176 (288)
T PRK14171        128 ------GYLHSGISQGFIPCTALGCL----AVIKK---------------------YEPNLTGKNVVIIGRSNIVGKPLS  176 (288)
T ss_pred             ------hhhhcCCCCCCcCCCHHHHH----HHHHH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence                  11111211223444554433    22221                     1247999999999995 5799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-++.|..+..+                            ..++.+..++||+|+.++.-    .+++..+.   
T Consensus       177 ~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~---  220 (288)
T PRK14171        177 ALL-LKENCSVTICHSK----------------------------THNLSSITSKADIVVAAIGS----PLKLTAEY---  220 (288)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----CCccCHHH---
Confidence            998 5678999877642                            14688899999999999974    56888766   


Q ss_pred             CCCCcEEEEcCCC
Q 016620          262 MKKEAILVNCSRG  274 (386)
Q Consensus       262 mk~gailIN~aRg  274 (386)
                      .|+|+++||+|--
T Consensus       221 vk~GavVIDvGin  233 (288)
T PRK14171        221 FNPESIVIDVGIN  233 (288)
T ss_pred             cCCCCEEEEeecc
Confidence            5799999999853

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=0.00078  Score=64.80  Aligned_cols=170  Identities=19%  Similarity=0.198  Sum_probs=105.9

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +.-++.|.+++.+..++ ..+++|+.+.+..     ..+++++..+  ..++.. +++.++-.  |=|-    |+....+
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--KDVD----Gl~~~n~  127 (284)
T PRK14193         55 RDCAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--KDAD----GLHPTNL  127 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cCcc----CCChhhh
Confidence            44566788887665543 3467766654432     3689998765  445544 34443332  3221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec-ChhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~-G~IG~~iA  181 (386)
                      ..+.      .+.++ ....++.-++.++    +                     +.+.++.|+++.|||- +.+|+++|
T Consensus       128 g~l~------~~~~~-~~PcTp~av~~ll----~---------------------~~~i~l~Gk~vvViGrS~~VGkPla  175 (284)
T PRK14193        128 GRLV------LNEPA-PLPCTPRGIVHLL----R---------------------RYDVELAGAHVVVIGRGVTVGRPIG  175 (284)
T ss_pred             hHHh------CCCCC-CCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCCcchHHHH
Confidence            2111      12222 2344554444322    1                     1235799999999998 56799999


Q ss_pred             HHHHhc--CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHH
Q 016620          182 RMMVEG--FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (386)
Q Consensus       182 ~~L~~~--fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~  259 (386)
                      .+|. .  -++.|..+...                            ..++++..++||+|+.++..    .++|..+. 
T Consensus       176 ~lL~-~~~~~atVtvchs~----------------------------T~~l~~~~k~ADIvV~AvGk----p~~i~~~~-  221 (284)
T PRK14193        176 LLLT-RRSENATVTLCHTG----------------------------TRDLAAHTRRADIIVAAAGV----AHLVTADM-  221 (284)
T ss_pred             HHHh-hccCCCEEEEeCCC----------------------------CCCHHHHHHhCCEEEEecCC----cCccCHHH-
Confidence            9884 4  68999887642                            13688899999999999974    46788766 


Q ss_pred             hcCCCCcEEEEcCCCc
Q 016620          260 ATMKKEAILVNCSRGP  275 (386)
Q Consensus       260 ~~mk~gailIN~aRg~  275 (386)
                        .|+|+++||+|.-.
T Consensus       222 --ik~GavVIDvGin~  235 (284)
T PRK14193        222 --VKPGAAVLDVGVSR  235 (284)
T ss_pred             --cCCCCEEEEccccc
Confidence              57999999998754

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.92  E-value=2.7e-05  Score=70.49  Aligned_cols=149  Identities=15%  Similarity=0.164  Sum_probs=78.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      ++|+|+|+|.+|..+|..|+ ..|.+|++||.+.... +.....        ..+.+++.. ...+.....+.++.+++|
T Consensus         1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~v-~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a   77 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEKV-EALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA   77 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHHH-HHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred             CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHHH-HHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence            58999999999999999985 7899999999887532 111110        001111110 001122346788889999


Q ss_pred             CEEEEccCCChhhhhcc--------cHHHHhcCCCCcEEEEcCCCcccCHHHH-HHHHHcCCcceEEee-ccCCCCCCC-
Q 016620          238 DVISLHPVLDKTTYHLI--------NKERLATMKKEAILVNCSRGPVIDEVAL-VEHLKQNPMFRVGLD-VFEDEPYMK-  306 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li--------~~~~~~~mk~gailIN~aRg~~vde~aL-~~aL~~g~i~gaalD-V~~~EP~~~-  306 (386)
                      |++++|+|...+..+-.        -+...+.++++.++|.-|.-.+=-.+.+ ...|++..-...-++ +|.+|-+.. 
T Consensus        78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G  157 (185)
T PF03721_consen   78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREG  157 (185)
T ss_dssp             SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TT
T ss_pred             ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCC
Confidence            99999998433222221        2345667789999999999777555533 344443222112222 245565432 


Q ss_pred             ---CCCCCCCCeEE
Q 016620          307 ---PGLSEMKNAIV  317 (386)
Q Consensus       307 ---~~L~~~~nvil  317 (386)
                         ..+...|+|++
T Consensus       158 ~a~~d~~~~~rvV~  171 (185)
T PF03721_consen  158 RAIEDFRNPPRVVG  171 (185)
T ss_dssp             SHHHHHHSSSEEEE
T ss_pred             CcchhccCCCEEEE
Confidence               24667777753

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.91  E-value=0.0001  Score=63.75  Aligned_cols=80  Identities=23%  Similarity=0.349  Sum_probs=65.3

Q ss_pred             ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       160 g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      +.+++|++|.|+|- +..|+.+|.+| ...|++|..++++.                            .++++.+++||
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD   73 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD   73 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence            35799999999998 56789999988 57899999887432                            36788899999


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +|+.+++..    ++|+.+.   +|+|++++|++...
T Consensus        74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence            999999853    6687766   68999999998654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=0.00074  Score=64.99  Aligned_cols=187  Identities=17%  Similarity=0.252  Sum_probs=112.2

Q ss_pred             CcEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHH-HHHH
Q 016620           15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAA   81 (386)
Q Consensus        15 ~~~vlvt~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~-----~~ad~vi~~~~--~~~~~~-~l~~   81 (386)
                      ++-++...+-+++. +    .+..++.|.+++....++ ..+++|+.+.+.     ++.+++++..+  ..+++. +++.
T Consensus        28 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~  106 (287)
T PRK14181         28 GLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQA  106 (287)
T ss_pred             cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhc
Confidence            34444445444432 2    234566788887765544 346776665552     24789998765  445554 3333


Q ss_pred             hhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCccccc
Q 016620           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (386)
Q Consensus        82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~  161 (386)
                      ++-.  |=|-    |+....+..+      +.+....+...++.-++-++    ++                     .+.
T Consensus       107 I~p~--KDVD----Gl~p~n~g~l------~~g~~~~~~PcTp~avi~lL----~~---------------------~~i  149 (287)
T PRK14181        107 ISPD--KDVD----GLHPVNMGKL------LLGETDGFIPCTPAGIIELL----KY---------------------YEI  149 (287)
T ss_pred             cCcc--cCcc----cCChhhHHHH------hcCCCCCCCCCCHHHHHHHH----HH---------------------hCC
Confidence            3322  3221    2222221111      11111123445554444322    21                     125


Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          162 LLKGQTVGVIGAG-RIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       162 ~l~g~~vgIvG~G-~IG~~iA~~L~~~f----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      ++.||++.|||-+ .+|+++|.+|. .-    ++.|..+..+                            ..++++.+++
T Consensus       150 ~l~Gk~vvViGrS~iVGkPla~lL~-~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~  200 (287)
T PRK14181        150 PLHGRHVAIVGRSNIVGKPLAALLM-QKHPDTNATVTLLHSQ----------------------------SENLTEILKT  200 (287)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHH-hCcCCCCCEEEEeCCC----------------------------CCCHHHHHhh
Confidence            7999999999995 57999999884 44    7888877542                            1468899999


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      ||+|+.+++.    .+++..+.   .|+|+++||+|--.
T Consensus       201 ADIvV~AvG~----p~~i~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        201 ADIIIAAIGV----PLFIKEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             CCEEEEccCC----cCccCHHH---cCCCCEEEEecccc
Confidence            9999999974    46788766   47999999998644

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=5e-05  Score=73.24  Aligned_cols=79  Identities=23%  Similarity=0.324  Sum_probs=64.3

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .++.|+++.|+|.|. .|+++|..| ...|++|..+++..                            .++.+.+++||+
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aDI  205 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQADI  205 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCCE
Confidence            479999999999998 999999998 57889999987622                            356777899999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |+.+++. +   +++..+.   +|+|++++|++-..
T Consensus       206 vI~AtG~-~---~~v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        206 IVGAVGK-P---ELIKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             EEEccCC-C---CcCCHHH---cCCCCEEEEEEEee
Confidence            9999963 2   2676654   68999999997644

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.90  E-value=0.00067  Score=66.65  Aligned_cols=172  Identities=14%  Similarity=0.240  Sum_probs=107.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+.+.+..++ ..+++|+.+.+..     +.|++++..+  ..+++.. ++...-.  |=|-    |+..+.+
T Consensus       109 K~a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--KDVD----Gl~p~N~  181 (345)
T PLN02897        109 KACEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--KDVD----GFHPLNV  181 (345)
T ss_pred             HHHHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----CCCHHHH
Confidence            44566788887765544 3467777655432     4689998754  4555543 3333222  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA  181 (386)
                      -.+...     .....+...++.-++.++    +                     +.+.++.||++.|||-+. +|+.+|
T Consensus       182 G~L~~~-----~~~~~~~PCTp~avi~LL----~---------------------~~~i~l~GK~vvVIGRS~iVGkPla  231 (345)
T PLN02897        182 GNLAMR-----GREPLFVSCTPKGCVELL----I---------------------RSGVEIAGKNAVVIGRSNIVGLPMS  231 (345)
T ss_pred             HHHhcC-----CCCCCCcCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCccccHHHH
Confidence            212111     000123455555555443    1                     123579999999999965 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-++.|..+....                            .++++..++||||+.++..    .+++..+.   
T Consensus       232 ~LL-~~~~ATVTicHs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~v~~d~---  275 (345)
T PLN02897        232 LLL-QRHDATVSTVHAFT----------------------------KDPEQITRKADIVIAAAGI----PNLVRGSW---  275 (345)
T ss_pred             HHH-HHCCCEEEEEcCCC----------------------------CCHHHHHhhCCEEEEccCC----cCccCHHH---
Confidence            988 56789998875421                            3678889999999999974    56788766   


Q ss_pred             CCCCcEEEEcCCCc
Q 016620          262 MKKEAILVNCSRGP  275 (386)
Q Consensus       262 mk~gailIN~aRg~  275 (386)
                      .|+|+++||+|--.
T Consensus       276 vk~GavVIDVGin~  289 (345)
T PLN02897        276 LKPGAVVIDVGTTP  289 (345)
T ss_pred             cCCCCEEEEccccc
Confidence            57999999998643

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=97.90  E-value=7.1e-05  Score=59.00  Aligned_cols=67  Identities=24%  Similarity=0.390  Sum_probs=53.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      ..+.+++++|+|.|.+|+.+++.+ ... +.+|.+||+                                        |+
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di   57 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI   57 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence            358899999999999999999998 455 567776641                                        99


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      ++.+.+.    .+.+.++....+++++++++++
T Consensus        58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          58 LVTATPA----GVPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence            9999975    4455566688899999999864

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.87  E-value=6e-05  Score=74.24  Aligned_cols=97  Identities=18%  Similarity=0.227  Sum_probs=67.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      -+++||||.|.+|+..++.++..+ ..+|.+||++.+.. +.+.+.    +++.   +.......+.++++++||+|++|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~----~~~~---g~~v~~~~~~~eav~~aDiVita  199 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALR----ASDY---EVPVRAATDPREAVEGCDILVTT  199 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhh---CCcEEEeCCHHHHhccCCEEEEe
Confidence            468999999999999777654333 35899999987653 222221    1111   11233457899999999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +|.   +.-++..+.   +|+|+.+..+|...
T Consensus       200 T~s---~~P~~~~~~---l~~g~~v~~vGs~~  225 (325)
T TIGR02371       200 TPS---RKPVVKADW---VSEGTHINAIGADA  225 (325)
T ss_pred             cCC---CCcEecHHH---cCCCCEEEecCCCC
Confidence            984   456666654   58999999998543

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.86  E-value=0.001  Score=63.96  Aligned_cols=186  Identities=17%  Similarity=0.157  Sum_probs=112.6

Q ss_pred             cEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhc---C--CCcEEEecCC--ccccHH-HHHHh
Q 016620           16 YRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIG---D--KCDGVIGQLT--EDWGET-LFAAL   82 (386)
Q Consensus        16 ~~vlvt~~~~~~~-~----~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~---~--~ad~vi~~~~--~~~~~~-~l~~l   82 (386)
                      +-++...+-+++. +    .+.-++.|..++.+..++ ..+++++.+.+.   .  +.+++++..+  ..+++. +++.+
T Consensus        33 LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I  111 (282)
T PRK14182         33 LTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAI  111 (282)
T ss_pred             EEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcc
Confidence            4444445444432 2    244566788887766544 346776665542   1  4689998765  455543 33333


Q ss_pred             hccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccc
Q 016620           83 SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNL  162 (386)
Q Consensus        83 ~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~  162 (386)
                      +-.  |=|       |.+.   ....|-.+.+.++.....+|.-++-++    ++                     .+.+
T Consensus       112 ~p~--KDV-------DGl~---~~n~g~l~~g~~~~~~PcTp~avi~ll----~~---------------------~~i~  154 (282)
T PRK14182        112 SPA--KDA-------DGFH---PFNVGALSIGIAGVPRPCTPAGVMRML----DE---------------------ARVD  154 (282)
T ss_pred             Ccc--cCc-------CCCC---HhHHHHHhCCCCCCCCCCCHHHHHHHH----HH---------------------hCCC
Confidence            322  222       2221   111111222223323444554444322    21                     1247


Q ss_pred             cCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +.|+++.|||-+ .+|+++|.+| ..-++.|..+..+.                            .++++..++||+|+
T Consensus       155 l~Gk~vvViGrS~iVGkPla~lL-~~~~AtVtichs~T----------------------------~nl~~~~~~ADIvI  205 (282)
T PRK14182        155 PKGKRALVVGRSNIVGKPMAMML-LERHATVTIAHSRT----------------------------ADLAGEVGRADILV  205 (282)
T ss_pred             CCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEE
Confidence            999999999995 5799999998 56789999876421                            36788899999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      .+++-    .++|..+.   .|+|+++||+|--.
T Consensus       206 ~AvGk----~~~i~~~~---ik~gaiVIDvGin~  232 (282)
T PRK14182        206 AAIGK----AELVKGAW---VKEGAVVIDVGMNR  232 (282)
T ss_pred             EecCC----cCccCHHH---cCCCCEEEEeecee
Confidence            99974    66788766   47999999998644

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.86  E-value=5.1e-05  Score=74.25  Aligned_cols=97  Identities=21%  Similarity=0.250  Sum_probs=63.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +.|++|+|+|.|.||+.+++.| +..| .+|++++|+..... .+...+       +.   ......++.+.+.++|+|+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra~-~la~~~-------g~---~~~~~~~~~~~l~~aDvVi  243 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERAE-ELAKEL-------GG---NAVPLDELLELLNEADVVI  243 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHHH-HHHHHc-------CC---eEEeHHHHHHHHhcCCEEE
Confidence            6899999999999999999997 4555 57999999865421 111111       11   1112235678889999999


Q ss_pred             EccCCChhhhhcccHHHHhcC-CCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~m-k~gailIN~aR  273 (386)
                      .++|...- ..++ +..+... +++.++||.+.
T Consensus       244 ~at~~~~~-~~~~-~~~~~~~~~~~~~viDlav  274 (311)
T cd05213         244 SATGAPHY-AKIV-ERAMKKRSGKPRLIVDLAV  274 (311)
T ss_pred             ECCCCCch-HHHH-HHHHhhCCCCCeEEEEeCC
Confidence            99995432 2222 3333322 35678888775

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.86  E-value=8.2e-05  Score=68.03  Aligned_cols=94  Identities=20%  Similarity=0.221  Sum_probs=64.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++++|+|.|+||+.+|++++ ..|.+|.+-+++.++....-.+.       .+.   . ....+.++..+.+|+|++++|
T Consensus         2 ~~~~i~GtGniG~alA~~~a-~ag~eV~igs~r~~~~~~a~a~~-------l~~---~-i~~~~~~dA~~~aDVVvLAVP   69 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLA-KAGHEVIIGSSRGPKALAAAAAA-------LGP---L-ITGGSNEDAAALADVVVLAVP   69 (211)
T ss_pred             cEEEEeccChHHHHHHHHHH-hCCCeEEEecCCChhHHHHHHHh-------hcc---c-cccCChHHHHhcCCEEEEecc
Confidence            57999999999999999985 78999998876665433321111       111   1 123577899999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      ... ... +.++...... |.++|++.-.
T Consensus        70 ~~a-~~~-v~~~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          70 FEA-IPD-VLAELRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHH-HHh-HHHHHHHHhC-CeEEEecCCC
Confidence            733 222 2355555565 8899988653

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.85  E-value=6.1e-05  Score=71.71  Aligned_cols=102  Identities=23%  Similarity=0.325  Sum_probs=65.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC---cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|+|||+|.||+.+++.|. .-|   .+|.+|+|+.... +...+.|       +     .....+.++++.++|+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l~-~~g~~~~~v~v~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~advVil   68 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLL-ASGVPAKDIIVSDPSPEKR-AALAEEY-------G-----VRAATDNQEAAQEADVVVL   68 (267)
T ss_pred             CEEEEEechHHHHHHHHHHH-hCCCCcceEEEEcCCHHHH-HHHHHhc-------C-----CeecCChHHHHhcCCEEEE
Confidence            57999999999999999874 456   6899999986542 2111100       1     1123577788899999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      |+|.. ....++ ++....+  +.++|.+.-|-  ..+.|.+.+.
T Consensus        69 ~v~~~-~~~~v~-~~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         69 AVKPQ-VMEEVL-SELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             EcCHH-HHHHHH-HHHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            99842 333333 2222223  45777776653  4556665554

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.83  E-value=0.00016  Score=67.08  Aligned_cols=116  Identities=24%  Similarity=0.321  Sum_probs=87.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---hhhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---l~~aDiVvl  242 (386)
                      +++|.||+|+||..++++| ..-|.+|++||+++....+         +...+     .....+++|+   +..--+|-+
T Consensus         1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~---------~~~~g-----a~~a~sl~el~~~L~~pr~vWl   65 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEE---------LKDEG-----ATGAASLDELVAKLSAPRIVWL   65 (300)
T ss_pred             CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHH---------HHhcC-----CccccCHHHHHHhcCCCcEEEE
Confidence            4789999999999999998 6789999999998876432         12222     2234577776   455678999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~  299 (386)
                      .+|-..-|..+| +++-.+|.+|-++|+-+-..--|.....+.|++..|.  -+||=
T Consensus        66 MvPag~it~~vi-~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~G  119 (300)
T COG1023          66 MVPAGDITDAVI-DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVG  119 (300)
T ss_pred             EccCCCchHHHH-HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEecc
Confidence            999876666665 5677789999999999988887877788888876554  34553

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.82  E-value=0.00029  Score=68.53  Aligned_cols=146  Identities=24%  Similarity=0.283  Sum_probs=93.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcCCCCc--------cccccCCHHHH
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQPV--------TWKRASSMDEV  233 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~l~el  233 (386)
                      -++|||||.|.||+.+|..++. -|.+|..+|++........ ......++   +.+....        ......++. .
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~-~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~   79 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERAL-AYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-A   79 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHH-HHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-H
Confidence            3689999999999999998753 5699999999854321111 10001111   1111100        011123333 5


Q ss_pred             hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCC
Q 016620          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM  312 (386)
Q Consensus       234 l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~  312 (386)
                      +++||+|+=++|-+-+.++-+-++.-...+++++| .|+|+   +...+|.++++ ..-...++..|.+-|     +..+
T Consensus        80 l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs---l~it~ia~~~~-rper~iG~HFfNP~~-----~m~L  150 (307)
T COG1250          80 LKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS---LSITELAEALK-RPERFIGLHFFNPVP-----LMPL  150 (307)
T ss_pred             hccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC---CCHHHHHHHhC-CchhEEEEeccCCCC-----ccee
Confidence            78999999999988887776767777778999988 67766   44577888884 445678887775433     4444


Q ss_pred             CCeEEcCCCC
Q 016620          313 KNAIVVPHIA  322 (386)
Q Consensus       313 ~nvilTPHia  322 (386)
                      --|+-+.+++
T Consensus       151 VEvI~g~~T~  160 (307)
T COG1250         151 VEVIRGEKTS  160 (307)
T ss_pred             EEEecCCCCC
Confidence            4566666554

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.82  E-value=4.4e-05  Score=77.89  Aligned_cols=98  Identities=21%  Similarity=0.245  Sum_probs=67.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|++|+|+|.|.||+.+++.| +..|+ +|++++|+.... ..+...       .+.   ......++.+.+.++|+|
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~-------~g~---~~~~~~~~~~~l~~aDvV  246 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEE-------FGG---EAIPLDELPEALAEADIV  246 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHH-------cCC---cEeeHHHHHHHhccCCEE
Confidence            37899999999999999999997 57897 799999986542 111111       111   111224566778899999


Q ss_pred             EEccCCChhhhhcccHHHHhcC-----CCCcEEEEcCCC
Q 016620          241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRG  274 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~m-----k~gailIN~aRg  274 (386)
                      +.|++.   ...++..+.++.+     +++.++||.+-.
T Consensus       247 I~aT~s---~~~~i~~~~l~~~~~~~~~~~~vviDla~P  282 (423)
T PRK00045        247 ISSTGA---PHPIIGKGMVERALKARRHRPLLLVDLAVP  282 (423)
T ss_pred             EECCCC---CCcEEcHHHHHHHHhhccCCCeEEEEeCCC
Confidence            999873   3456677766554     245788887653

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.82  E-value=6.7e-05  Score=73.80  Aligned_cols=101  Identities=18%  Similarity=0.180  Sum_probs=65.1

Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh---hhhhhh--hh--cCCCCccccccCCHHHHhhhCCEE
Q 016620          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT---AYGQFL--KA--NGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       168 vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~---~~~~~~--~~--~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      |||+|||.||+.+++.+.+.-++++.+........ ..+..   .|+...  ..  ......+.....++++++.++|+|
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~-~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV   79 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDF-EAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV   79 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHH-HHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence            69999999999999986444578887664322221 11111   121100  00  000001111234699999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +.|.|   .+.+..+.+.+..|+.+++|+-.-
T Consensus        80 ve~Tp---~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        80 VDATP---GGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             EECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence            99987   678889999999999999998753

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.81  E-value=9e-05  Score=72.64  Aligned_cols=97  Identities=20%  Similarity=0.221  Sum_probs=64.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ...++|+|||.|.+|+.+++.+...++ .+|.+|+|+.... +++.+.+    ...+   .......++++++.+||+|+
T Consensus       123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a-~~~a~~~----~~~g---~~~~~~~~~~~av~~aDIVi  194 (314)
T PRK06141        123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKA-EALAAEL----RAQG---FDAEVVTDLEAAVRQADIIS  194 (314)
T ss_pred             CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHH-HHHHHHH----HhcC---CceEEeCCHHHHHhcCCEEE
Confidence            356789999999999999986543345 5799999987542 3332221    1111   11223578899999999998


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ++.|..   ..++..+   .+++|+.+.-++.
T Consensus       195 ~aT~s~---~pvl~~~---~l~~g~~i~~ig~  220 (314)
T PRK06141        195 CATLST---EPLVRGE---WLKPGTHLDLVGN  220 (314)
T ss_pred             EeeCCC---CCEecHH---HcCCCCEEEeeCC
Confidence            888853   4566654   4689985444443

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.80  E-value=0.0016  Score=63.12  Aligned_cols=171  Identities=15%  Similarity=0.202  Sum_probs=104.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++....++ ..+++|+...+..     +.+++++..+  ..+++. +++.++-.  |=|-    |+..+.+
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  126 (297)
T PRK14167         54 RDCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--KDVD----GFHPENV  126 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence            44566788887766554 3466666644432     3689998765  345543 33333322  2221    2221111


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      ..+      ..+.+ .+...+|.-++.++    +                     +.+.++.|+++.|||-+ .+|+++|
T Consensus       127 g~l------~~g~~-~~~PcTp~avi~lL----~---------------------~~~i~l~Gk~vvViGrS~iVGkPla  174 (297)
T PRK14167        127 GRL------VAGDA-RFKPCTPHGIQKLL----A---------------------AAGVDTEGADVVVVGRSDIVGKPMA  174 (297)
T ss_pred             HHH------hCCCC-CCCCCCHHHHHHHH----H---------------------HhCCCCCCCEEEEECCCcccHHHHH
Confidence            111      11112 23445555444322    1                     11247999999999995 5799999


Q ss_pred             HHHHhcC---CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHH
Q 016620          182 RMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (386)
Q Consensus       182 ~~L~~~f---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~  258 (386)
                      .+|.+.+   ++.|..+...                            ..++++..++||+|+.++.-    .+++..+.
T Consensus       175 ~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~  222 (297)
T PRK14167        175 NLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAAGV----PELIDGSM  222 (297)
T ss_pred             HHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            9885443   7899877532                            23688899999999999964    56787765


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 016620          259 LATMKKEAILVNCSRGP  275 (386)
Q Consensus       259 ~~~mk~gailIN~aRg~  275 (386)
                         .|+|+++||+|--.
T Consensus       223 ---ik~gaiVIDvGin~  236 (297)
T PRK14167        223 ---LSEGATVIDVGINR  236 (297)
T ss_pred             ---cCCCCEEEEccccc
Confidence               57999999998544

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.78  E-value=0.00014  Score=71.80  Aligned_cols=118  Identities=18%  Similarity=0.218  Sum_probs=72.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCC----CCccccccCCHHHHhhhCCEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGE----QPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++|+|||.|.||..+|..|+ ..|.+|.+||+....  +.. ...+-.... .+.    .+.......+. +.+..+|+|
T Consensus         3 mkI~IiG~G~mG~~~A~~L~-~~G~~V~~~~r~~~~--~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLA-AAGADVTLIGRARIG--DEL-RAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHH-hcCCcEEEEecHHHH--HHH-HhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            57999999999999999984 568999999985421  111 100000000 000    00001112344 567899999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      ++++|.. +....+ ++....++++.+++.+.-| +-..+.+.+.+...++
T Consensus        78 il~vk~~-~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~  125 (341)
T PRK08229         78 LVTVKSA-ATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV  125 (341)
T ss_pred             EEEecCc-chHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence            9999854 445544 4566667889999888654 4445667777655444

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.76  E-value=5.6e-05  Score=72.54  Aligned_cols=102  Identities=20%  Similarity=0.329  Sum_probs=74.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .+...+|.|+|.|-+|..-||.. -++|++|...|.+..+ +....+.|..      ...........+++.+.++|+|+
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA-~glgA~Vtild~n~~r-l~~ldd~f~~------rv~~~~st~~~iee~v~~aDlvI  236 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIA-IGLGADVTILDLNIDR-LRQLDDLFGG------RVHTLYSTPSNIEEAVKKADLVI  236 (371)
T ss_pred             CCCCccEEEECCccccchHHHHH-hccCCeeEEEecCHHH-HhhhhHhhCc------eeEEEEcCHHHHHHHhhhccEEE
Confidence            35667899999999999999984 7999999999988643 3222222211      00111223456889999999998


Q ss_pred             Ecc--CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          242 LHP--VLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       242 l~l--Plt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      .++  |. .+.-.++.++.+++||||+++||++
T Consensus       237 gaVLIpg-akaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         237 GAVLIPG-AKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             EEEEecC-CCCceehhHHHHHhcCCCcEEEEEE
Confidence            764  43 3456788899999999999999984

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=97.72  E-value=0.00011  Score=69.91  Aligned_cols=122  Identities=18%  Similarity=0.149  Sum_probs=70.4

Q ss_pred             HHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHH
Q 016620          180 YARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (386)
Q Consensus       180 iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~  258 (386)
                      +|+.|++ ++..+|++||+++......         ...+..   .....+ .+.++++|+|++|+|.. .+..++ ++.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a---------~~~g~~---~~~~~~-~~~~~~~DlvvlavP~~-~~~~~l-~~~   65 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAA---------LELGII---DEASTD-IEAVEDADLVVLAVPVS-AIEDVL-EEI   65 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHH---------HHTTSS---SEEESH-HHHGGCCSEEEE-S-HH-HHHHHH-HHH
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHH---------HHCCCe---eeccCC-HhHhcCCCEEEEcCCHH-HHHHHH-HHh
Confidence            3555532 4458999999988764322         112221   112233 57789999999999963 344444 566


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------CCCCCCCCCeEEcCCCC
Q 016620          259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLSEMKNAIVVPHIA  322 (386)
Q Consensus       259 ~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~~~L~~~~nvilTPHia  322 (386)
                      ...+++|+++++++.-+.--.+++.+.+..+      ..+....|+.          ...|++-.++++||+-.
T Consensus        66 ~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~------~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   66 APYLKPGAIVTDVGSVKAPIVEAMERLLPEG------VRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             HCGS-TTSEEEE--S-CHHHHHHHHHHHTSS------GEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             hhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc------cceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            6779999999999986653344444444422      2333344552          23688889999999855

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.72  E-value=0.00015  Score=70.78  Aligned_cols=97  Identities=11%  Similarity=0.081  Sum_probs=68.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ...++++|+|.|.+|+..++.++..++. +|.+|+|+... .+.+.+.+    ...   ..... ..++++++.++|+|+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~----~~~---~~~~~-~~~~~~av~~aDiVi  193 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHA----RAL---GPTAE-PLDGEAIPEAVDLVV  193 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHH----Hhc---CCeeE-ECCHHHHhhcCCEEE
Confidence            4567899999999999999987444564 69999998754 23333222    111   11111 468899999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      .|+|.+   ..++..    .+|+|+.++.+|.-.
T Consensus       194 taT~s~---~Pl~~~----~~~~g~hi~~iGs~~  220 (304)
T PRK07340        194 TATTSR---TPVYPE----AARAGRLVVAVGAFT  220 (304)
T ss_pred             EccCCC---CceeCc----cCCCCCEEEecCCCC
Confidence            999953   466654    269999999998643

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00017  Score=69.24  Aligned_cols=79  Identities=19%  Similarity=0.310  Sum_probs=64.8

Q ss_pred             cccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .++.|+++.|||-+ .+|+++|.+| ..-|+.|..+...                            ..++.+..++||+
T Consensus       153 i~l~Gk~vvViGrS~~VG~Pla~lL-~~~~AtVti~hs~----------------------------T~~l~~~~~~ADI  203 (281)
T PRK14183        153 IDVKGKDVCVVGASNIVGKPMAALL-LNANATVDICHIF----------------------------TKDLKAHTKKADI  203 (281)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CcCHHHHHhhCCE
Confidence            57999999999998 8999999998 5678999877532                            1367888999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |+.++..    .+++..+.   .|+|+++||+|--.
T Consensus       204 vV~AvGk----p~~i~~~~---vk~gavvIDvGin~  232 (281)
T PRK14183        204 VIVGVGK----PNLITEDM---VKEGAIVIDIGINR  232 (281)
T ss_pred             EEEecCc----ccccCHHH---cCCCcEEEEeeccc
Confidence            9999974    56777766   47999999998533

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.68  E-value=0.00059  Score=74.14  Aligned_cols=130  Identities=18%  Similarity=0.193  Sum_probs=85.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQP--------VTWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (386)
                      ++|+|||.|.||..||..++ ..|.+|+.||++......  +... .+.. ..+.+...        .......+++ .+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~g~~~~~~~~~~~~~i~~~~~~~-~~  390 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNK-QVERGKIDGAKMAGVLSSIRPTLDYA-GF  390 (715)
T ss_pred             ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCChhhHHHHHhCeEEeCCHH-Hh
Confidence            57999999999999999885 669999999998764221  1111 1111 11111110        0122235664 46


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~  301 (386)
                      ++||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+  +....|.++++. .-..+++..|.+
T Consensus       391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P  454 (715)
T PRK11730        391 ERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNP  454 (715)
T ss_pred             cCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCc
Confidence            9999999999988888877778888889999888543332  445667777753 345677776643

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.66  E-value=0.00035  Score=63.38  Aligned_cols=94  Identities=21%  Similarity=0.317  Sum_probs=65.8

Q ss_pred             cccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc------cCCHH
Q 016620          159 VGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR------ASSMD  231 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~  231 (386)
                      .+.+++||++.|||-+. +|+++|.+| ..-|+.|+.+|.+.-..   |        .. +.. .+...      ..++.
T Consensus        56 ~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~---~--------~~-~~~-~~hs~t~~~~~~~~l~  121 (197)
T cd01079          56 YGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQV---F--------TR-GES-IRHEKHHVTDEEAMTL  121 (197)
T ss_pred             cCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccc---c--------cc-ccc-cccccccccchhhHHH
Confidence            46789999999999965 699999998 56799999997432110   0        00 000 00000      11278


Q ss_pred             HHhhhCCEEEEccCCChhhhhc-ccHHHHhcCCCCcEEEEcCC
Q 016620          232 EVLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR  273 (386)
Q Consensus       232 ell~~aDiVvl~lPlt~~t~~l-i~~~~~~~mk~gailIN~aR  273 (386)
                      +.+++||+|+.+++.    .++ +..+.   .|+|+++||+|-
T Consensus       122 ~~~~~ADIVIsAvG~----~~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         122 DCLSQSDVVITGVPS----PNYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             HHhhhCCEEEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence            899999999999984    455 77766   479999999984

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.66  E-value=0.001  Score=68.69  Aligned_cols=148  Identities=14%  Similarity=0.167  Sum_probs=89.3

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHh--------hhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      ++|+|+|+|.+|..+|-.|++ +.|.+|++||.+.... +....        ...+.+.+.  .........++++.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v-~~l~~g~~~~~e~gl~ell~~~--~~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRI-DAWNSDQLPIYEPGLDEVVKQC--RGKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHH-HHHHcCCCccCCCCHHHHHHHh--hcCCEEEEcCHHHHHhc
Confidence            579999999999999998863 4578999999876542 21100        000001110  00012233567888999


Q ss_pred             CCEEEEccCCChh-----------hhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee-ccCCC
Q 016620          237 ADVISLHPVLDKT-----------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDE  302 (386)
Q Consensus       237 aDiVvl~lPlt~~-----------t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalD-V~~~E  302 (386)
                      ||++++|+|....           ...+.  .++.-+.+++|.++|.-|.-.+=-.+.+...+.+.. .|.-+. +|.+|
T Consensus        79 advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g~~f~v~~~PE  157 (473)
T PLN02353         79 ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KGINFQILSNPE  157 (473)
T ss_pred             CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CCCCeEEEECCC
Confidence            9999999863221           11221  234556679999999988866655667777776521 121122 24566


Q ss_pred             CCCC----CCCCCCCCeEE
Q 016620          303 PYMK----PGLSEMKNAIV  317 (386)
Q Consensus       303 P~~~----~~L~~~~nvil  317 (386)
                      -+..    ..+...|+|++
T Consensus       158 rl~~G~a~~d~~~p~riVi  176 (473)
T PLN02353        158 FLAEGTAIEDLFKPDRVLI  176 (473)
T ss_pred             ccCCCCcccccCCCCEEEE
Confidence            5532    25667777764

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.66  E-value=0.00036  Score=64.71  Aligned_cols=103  Identities=15%  Similarity=0.135  Sum_probs=62.3

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+||| .|.||+.+|+.|+ ..|.+|.+++|+.+.. +.....+...+...+. .... ...+..+.++.+|+|++++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~-~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~-~~~~-~~~~~~ea~~~aDvVilav   76 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLA-KAGNKIIIGSRDLEKA-EEAAAKALEELGHGGS-DIKV-TGADNAEAAKRADVVILAV   76 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHH-hCCCEEEEEEcCHHHH-HHHHHHHHhhccccCC-CceE-EEeChHHHHhcCCEEEEEC
Confidence            4799997 9999999999984 6688999999876542 2111111000000010 0001 1236678899999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |.. ....++ ++.-..++ +.++|+++-|-
T Consensus        77 p~~-~~~~~l-~~l~~~l~-~~vvI~~~ngi  104 (219)
T TIGR01915        77 PWD-HVLKTL-ESLRDELS-GKLVISPVVPL  104 (219)
T ss_pred             CHH-HHHHHH-HHHHHhcc-CCEEEEeccCc
Confidence            953 233333 22223344 57899987764

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.62  E-value=0.00057  Score=74.37  Aligned_cols=128  Identities=20%  Similarity=0.211  Sum_probs=86.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP--------VTWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (386)
                      ++|+|||.|.||..||..++ ..|++|+.||++.......  ... .+....+ .+...        .......+++ .+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~-~g~~~~~~~~~~~~~i~~~~~~~-~~  412 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVK-RKKITSLERDSILSNLTPTLDYS-GF  412 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHhCeEEeCCHH-Hh
Confidence            57999999999999999875 5699999999987642211  111 1111111 11110        1122235664 56


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      ++||+|+=++|-+-+.+.-+-.+.-+.++++++|. |+|.   ++...|.+.++. .-..+++..|.
T Consensus       413 ~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs---l~i~~la~~~~~-p~r~ig~Hff~  475 (737)
T TIGR02441       413 KNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA---LPIKDIAAVSSR-PEKVIGMHYFS  475 (737)
T ss_pred             ccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcCC-ccceEEEeccC
Confidence            89999999999888888777788888899999884 5554   455777777754 34577777775

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.61  E-value=0.00028  Score=68.25  Aligned_cols=120  Identities=13%  Similarity=0.219  Sum_probs=71.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|+|.|.||..+|..|+ ..|.+|..|+| .. ..+...+ .+-..... +..........+.++....+|+|++|+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav   76 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PK-RAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV   76 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCCCceEEEec-HH-HHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence            47999999999999999985 56899999998 32 2221111 00000000 000000111345667778999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      |.. ++...+ ++.....+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        77 k~~-~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         77 KAY-QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             ccc-CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            953 334433 3344445778888877555 34466777776554443

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.59  E-value=0.00094  Score=72.51  Aligned_cols=128  Identities=20%  Similarity=0.210  Sum_probs=84.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQP--------VTWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (386)
                      ++|+|||.|.||..||..++ ..|.+|+.+|++......  +... .+....+ .+...        .......++ +.+
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~-~~~  390 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVE-RGRITPAKMAGVLNGITPTLSY-AGF  390 (714)
T ss_pred             ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHH-cCCCChhhHHHHHhCeEEeCCH-HHh
Confidence            57999999999999999885 569999999998764221  1111 1111111 11100        012223455 346


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI-N~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      ++||+|+=++|-+-+.+.-+-.+.-+.++++++|. |+|.   ++..+|.++++. .-...++-.|.
T Consensus       391 ~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~---l~i~~ia~~~~~-p~r~ig~Hff~  453 (714)
T TIGR02437       391 DNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST---ISISLLAKALKR-PENFCGMHFFN  453 (714)
T ss_pred             cCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC---CCHHHHHhhcCC-cccEEEEecCC
Confidence            99999999999888877777777778899999884 4444   445667777754 34566777664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.59  E-value=0.00026  Score=69.86  Aligned_cols=101  Identities=29%  Similarity=0.376  Sum_probs=70.7

Q ss_pred             ccccCCCeEEEEec-ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       160 g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      +..+.|++|.|+|. |.||+.+++.|+...| .+++.++|+... .......    +   .     .....++++.+.++
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r-l~~La~e----l---~-----~~~i~~l~~~l~~a  216 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER-LQELQAE----L---G-----GGKILSLEEALPEA  216 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH-HHHHHHH----h---c-----cccHHhHHHHHccC
Confidence            35799999999999 8999999999853455 489999987543 2211110    0   0     01234688999999


Q ss_pred             CEEEEccCCChhhhh-cccHHHHhcCCCCcEEEEcCCCcccCH
Q 016620          238 DVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       238 DiVvl~lPlt~~t~~-li~~~~~~~mk~gailIN~aRg~~vde  279 (386)
                      |+|+.+.-..   .. +++.+.   ++++.++||+|+..=||.
T Consensus       217 DiVv~~ts~~---~~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        217 DIVVWVASMP---KGVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CEEEECCcCC---cCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence            9998877532   33 477764   479999999999776653

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.59  E-value=0.0003  Score=68.94  Aligned_cols=99  Identities=21%  Similarity=0.216  Sum_probs=60.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      +++||+|.|..|+.-++.++.-++. +|.+|+|+... .++|.+.    ++.   .......+.+.++++++||+|+.|+
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~----~~~---~~~~v~~~~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAAR----LRD---LGVPVVAVDSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHH----HHC---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHh----hcc---ccccceeccchhhhcccCCEEEEcc
Confidence            5899999999999999877555665 79999998754 2333332    222   2334445689999999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      |.+..+ -+++.+   .+++|+.++.++....
T Consensus       201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred             CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence            854432 667665   4689999999987543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.59  E-value=0.00032  Score=67.80  Aligned_cols=171  Identities=21%  Similarity=0.238  Sum_probs=105.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +.-++.|.+.+.+..++ ..+++|+.+.+..     +.+++++..+  ..+++. +++..+-.  |=|-    |+....+
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~n~  127 (297)
T PRK14186         55 KACARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--KDAD----GLHPLNL  127 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhH
Confidence            44566788887665543 3467666654432     3689998755  345443 33333322  2221    2211111


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      ..+      ..+.++ +...+|.-++-++    ++                     .+.++.|+++.|||-+ .+|+++|
T Consensus       128 g~l------~~~~~~-~~PcTp~aii~lL----~~---------------------~~i~l~Gk~vvVIGrS~iVGkPla  175 (297)
T PRK14186        128 GRL------VKGEPG-LRSCTPAGVMRLL----RS---------------------QQIDIAGKKAVVVGRSILVGKPLA  175 (297)
T ss_pred             HHH------hCCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            111      111122 3344454444322    21                     1357999999999995 5799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-|+.|..+...                            ..++++..++||+|+.+++-    .+++..+.   
T Consensus       176 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~---  219 (297)
T PRK14186        176 LML-LAANATVTIAHSR----------------------------TQDLASITREADILVAAAGR----PNLIGAEM---  219 (297)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH---
Confidence            998 5779999887542                            13688899999999999984    46787766   


Q ss_pred             CCCCcEEEEcCCCcc
Q 016620          262 MKKEAILVNCSRGPV  276 (386)
Q Consensus       262 mk~gailIN~aRg~~  276 (386)
                      .|+|+++||+|--.+
T Consensus       220 ik~gavVIDvGin~~  234 (297)
T PRK14186        220 VKPGAVVVDVGIHRL  234 (297)
T ss_pred             cCCCCEEEEeccccc
Confidence            579999999986553

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.58  E-value=0.001  Score=72.09  Aligned_cols=130  Identities=12%  Similarity=0.163  Sum_probs=83.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP--------VTWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (386)
                      ++|+|||.|.||..+|..++...|++|+.||++.......  ... .+.. ..+.+...        .......+++ .+
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~i~~~~~~~-~~  382 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDK-GVKRRHMTPAERDNQMALITGTTDYR-GF  382 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHcCeEEeCChH-Hh
Confidence            5799999999999999987424699999999987532111  110 1111 01111100        1122235664 57


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      ++||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+  +....|.++++. .-..+++.-|.
T Consensus       383 ~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~Hffn  445 (699)
T TIGR02440       383 KDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFS  445 (699)
T ss_pred             ccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCC
Confidence            8999999999988888877777777888999888543332  344667777753 34567777664

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.58  E-value=0.00035  Score=67.26  Aligned_cols=102  Identities=16%  Similarity=0.159  Sum_probs=62.0

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.++++.|+|.|.+|+++++.| ...| .+|++++|+.... ++..+.+    ....  ....  ..++.+.+..+|+|
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~a-~~l~~~~----~~~~--~~~~--~~~~~~~~~~~Div  189 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVERA-EELAKLF----GALG--KAEL--DLELQEELADFDLI  189 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHh----hhcc--ceee--cccchhccccCCEE
Confidence            57889999999999999999998 5789 6899999986542 2221111    1000  0011  12345677889999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +.++|..-....-...-.+..++++++++++.-
T Consensus       190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY  222 (278)
T PRK00258        190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIY  222 (278)
T ss_pred             EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeec
Confidence            999996432110000111233455666666654

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.57  E-value=0.00039  Score=63.08  Aligned_cols=107  Identities=18%  Similarity=0.158  Sum_probs=64.7

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLRE  236 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~  236 (386)
                      ..++++++.|+|. |.+|+.+++.|+ ..|.+|..++|+... .+...+.+.+   ..+ .....   ....++.+.+++
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~-~~~~~~~~~~~~~~~~~~~~   97 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLER-AQKAADSLRA---RFG-EGVGAVETSDDAARAAAIKG   97 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHH-HHHHHHHHHh---hcC-CcEEEeeCCCHHHHHHHHhc
Confidence            4688999999995 999999999984 678899999987643 2222211100   000 00111   112334577889


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v  277 (386)
                      +|+|+.+.|....  ..+.  .-...+++.+++|+.+...+
T Consensus        98 ~diVi~at~~g~~--~~~~--~~~~~~~~~vv~D~~~~~~~  134 (194)
T cd01078          98 ADVVFAAGAAGVE--LLEK--LAWAPKPLAVAADVNAVPPV  134 (194)
T ss_pred             CCEEEECCCCCce--echh--hhcccCceeEEEEccCCCCC
Confidence            9999999986442  1111  11123456778877775543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.57  E-value=0.00036  Score=67.04  Aligned_cols=170  Identities=18%  Similarity=0.234  Sum_probs=105.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+.+.+..++ ..+++|+.+.+..     +.+++++..+  ..+++.. ++.++-.  |=|-    |+..+.+
T Consensus        53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  125 (282)
T PRK14166         53 KACEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDVD----GFHPINV  125 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--cCcc----cCChhhh
Confidence            44566788877665544 2467766655432     4689998755  3455433 3333222  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      ..+.      .+....+...++.-++.++    ++                     .+.++.|+++.|||-+ .+|+++|
T Consensus       126 g~l~------~g~~~~~~PcTp~avi~lL----~~---------------------y~i~l~Gk~vvVvGrS~iVGkPla  174 (282)
T PRK14166        126 GYLN------LGLESGFLPCTPLGVMKLL----KA---------------------YEIDLEGKDAVIIGASNIVGRPMA  174 (282)
T ss_pred             HHHh------cCCCCCCcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence            2111      1101123445555444322    21                     1257999999999995 5799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .+| ..-++.|..+..+.                            .++++..++||+|+.++.-    .+++..+.   
T Consensus       175 ~lL-~~~~atVt~chs~T----------------------------~nl~~~~~~ADIvIsAvGk----p~~i~~~~---  218 (282)
T PRK14166        175 TML-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDM---  218 (282)
T ss_pred             HHH-HHCCCEEEEeCCCC----------------------------CCHHHHHhhCCEEEEcCCC----cCccCHHH---
Confidence            998 56799999876422                            3688899999999999974    66788775   


Q ss_pred             CCCCcEEEEcCCC
Q 016620          262 MKKEAILVNCSRG  274 (386)
Q Consensus       262 mk~gailIN~aRg  274 (386)
                      .|+|+++||+|--
T Consensus       219 vk~GavVIDvGin  231 (282)
T PRK14166        219 VKEGVIVVDVGIN  231 (282)
T ss_pred             cCCCCEEEEeccc
Confidence            5799999999853

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.57  E-value=0.00043  Score=66.05  Aligned_cols=100  Identities=25%  Similarity=0.380  Sum_probs=70.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ++|||||+|+||++++.-|. .-|    .+|++.+|+.+.+. ...+.|       +   ..  ...+..++..++|+|+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~-~~g~~~~~~I~v~~~~~e~~~-~l~~~~-------g---~~--~~~~~~~~~~~advv~   67 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLL-KSGALPPEEIIVTNRSEEKRA-ALAAEY-------G---VV--TTTDNQEAVEEADVVF   67 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHH-hcCCCCcceEEEeCCCHHHHH-HHHHHc-------C---Cc--ccCcHHHHHhhCCEEE
Confidence            57999999999999999874 455    58999999887653 222222       1   11  1467788999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 016620          242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk---~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      +++.  |+..    ++.++.++   ++.++|.++=|-  ..+.|.+.+.
T Consensus        68 LavK--Pq~~----~~vl~~l~~~~~~~lvISiaAGv--~~~~l~~~l~  108 (266)
T COG0345          68 LAVK--PQDL----EEVLSKLKPLTKDKLVISIAAGV--SIETLERLLG  108 (266)
T ss_pred             EEeC--hHhH----HHHHHHhhcccCCCEEEEEeCCC--CHHHHHHHcC
Confidence            9996  3222    45566665   688999998764  4556666654

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.56  E-value=0.00042  Score=68.69  Aligned_cols=108  Identities=19%  Similarity=0.299  Sum_probs=66.5

Q ss_pred             eEEEEecChhHHHHHHHHHh-c------CCcEEEEEcCCh---hhHHHHHHhhhhhhhh--hcCCCCccccccCCHHHHh
Q 016620          167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLK--ANGEQPVTWKRASSMDEVL  234 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~-~------fg~~V~~~d~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~ell  234 (386)
                      +|+|||.|+.|.++|..|+. +      |+.+|..|.+..   .....+......+..+  ..-..+.......++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            58999999999999998854 2      448999998732   1222111111000000  0000121222346899999


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      +.||+|++++|. ...+.+ -.+.-..++++..+|+++-|=-
T Consensus        81 ~~ADiIIlAVPs-~~i~~v-l~~l~~~l~~~~~iVs~tKGie  120 (342)
T TIGR03376        81 KGADILVFVIPH-QFLEGI-CKQLKGHVKPNARAISCIKGLE  120 (342)
T ss_pred             hcCCEEEEECCh-HHHHHH-HHHHHhhcCCCCEEEEEeCCcc
Confidence            999999999995 222333 3445556788899999988743

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.56  E-value=0.00043  Score=66.85  Aligned_cols=119  Identities=16%  Similarity=0.183  Sum_probs=70.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|+|+|.|.||..+|..|+ ..|.+|..++++... .+..... +-... .+..........+.+++ ..+|+|++++|
T Consensus         1 m~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~-~~~~~~~-g~~~~-~~~~~~~~~~~~~~~~~-~~~d~vila~k   75 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAH-LDALNEN-GLRLE-DGEITVPVLAADDPAEL-GPQDLVILAVK   75 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHH-HHHHHHc-CCccc-CCceeecccCCCChhHc-CCCCEEEEecc
Confidence            47999999999999999985 568999999986433 1111100 00000 01000001123456665 89999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      .. ++..++ +.....+.+++.+|...-| +-.++.+.+.+....+.
T Consensus        76 ~~-~~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~  119 (304)
T PRK06522         76 AY-QLPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVL  119 (304)
T ss_pred             cc-cHHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEE
Confidence            53 344433 3344556777888877776 33355666666544444

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.53  E-value=0.00029  Score=67.56  Aligned_cols=91  Identities=27%  Similarity=0.364  Sum_probs=65.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      -|.||+|+|||||+-|.+=|..| +--|.+|++=-|.....-..        ..+.|     + ...+.+|++++||+|.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~k--------A~~dG-----f-~V~~v~ea~k~ADvim   79 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKK--------AKEDG-----F-KVYTVEEAAKRADVVM   79 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHH--------HHhcC-----C-EeecHHHHhhcCCEEE
Confidence            58999999999999999999998 68899877654433321110        11112     2 2468899999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEE
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAIL  268 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gail  268 (386)
                      +.+|.. ....++..+.-..|+.|+.|
T Consensus        80 ~L~PDe-~q~~vy~~~I~p~Lk~G~aL  105 (338)
T COG0059          80 ILLPDE-QQKEVYEKEIAPNLKEGAAL  105 (338)
T ss_pred             EeCchh-hHHHHHHHHhhhhhcCCceE
Confidence            999963 33556666777888888744

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.51  E-value=0.00051  Score=67.62  Aligned_cols=97  Identities=15%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ..++++|||.|.+|+..++.++...+. +|.+|+|+.... +++.+.+    ...  .+.....+.++++++.++|+|++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a-~~~~~~~----~~~--~~~~~~~~~~~~~~~~~aDiVi~  198 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKA-YAFAQEI----QSK--FNTEIYVVNSADEAIEEADIIVT  198 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHh--cCCcEEEeCCHHHHHhcCCEEEE
Confidence            467899999999999988776444555 699999987542 3332221    111  11122335788999999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      |+|..   .-++.    ..+|+|+.++.++.-
T Consensus       199 aT~s~---~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        199 VTNAK---TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             ccCCC---CcchH----HhcCCCcEEEecCCC
Confidence            99954   34554    456999999988764

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.51  E-value=0.0005  Score=66.38  Aligned_cols=79  Identities=18%  Similarity=0.253  Sum_probs=65.0

Q ss_pred             cccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .++.||++.|||-+ .+|+++|.+| ..-++.|+.++...                            .++.+..++||+
T Consensus       156 i~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVt~chs~T----------------------------~~l~~~~~~ADI  206 (294)
T PRK14187        156 RNLSGSDAVVIGRSNIVGKPMACLL-LGENCTVTTVHSAT----------------------------RDLADYCSKADI  206 (294)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHH-hhCCCEEEEeCCCC----------------------------CCHHHHHhhCCE
Confidence            57999999999995 5799999998 57899999876422                            368889999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |+.++..    .+++..+.+   |+|+++||+|--.
T Consensus       207 vVsAvGk----p~~i~~~~i---k~gaiVIDVGin~  235 (294)
T PRK14187        207 LVAAVGI----PNFVKYSWI---KKGAIVIDVGINS  235 (294)
T ss_pred             EEEccCC----cCccCHHHc---CCCCEEEEecccc
Confidence            9999974    567887664   6999999998644

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.50  E-value=0.00052  Score=65.93  Aligned_cols=77  Identities=14%  Similarity=0.248  Sum_probs=63.6

Q ss_pred             cccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .++.|+++.|||-+ .+|+++|.+| ..-|++|..+....                            .++.+..++||+
T Consensus       154 i~l~Gk~vvViGrS~~VGkPla~lL-~~~~ATVt~chs~T----------------------------~dl~~~~k~ADI  204 (282)
T PRK14180        154 IKTEGAYAVVVGASNVVGKPVSQLL-LNAKATVTTCHRFT----------------------------TDLKSHTTKADI  204 (282)
T ss_pred             CCCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcCE
Confidence            57999999999985 5799999998 56799999876422                            367888999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+.+++-    .++|..+.   .|+|+++||+|-
T Consensus       205 vIsAvGk----p~~i~~~~---vk~gavVIDvGi  231 (282)
T PRK14180        205 LIVAVGK----PNFITADM---VKEGAVVIDVGI  231 (282)
T ss_pred             EEEccCC----cCcCCHHH---cCCCcEEEEecc
Confidence            9999974    56777765   579999999985

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.48  E-value=0.00058  Score=66.97  Aligned_cols=96  Identities=13%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .-++++|+|.|..++.-++.+...+.. +|.+|+|+.... ++|.+.    .+..   ........+.+++++.||+|+.
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~----~~~~---~~~v~~~~~~~~av~~ADIV~t  198 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQY----AQAL---GFAVNTTLDAAEVAHAANLIVT  198 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhc---CCcEEEECCHHHHhcCCCEEEE
Confidence            356899999999999999877544444 799999987653 222221    2211   1223335789999999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +++   .+.-+|..+.   +|+|+.++.+|.
T Consensus       199 aT~---s~~P~~~~~~---l~~G~hi~~iGs  223 (315)
T PRK06823        199 TTP---SREPLLQAED---IQPGTHITAVGA  223 (315)
T ss_pred             ecC---CCCceeCHHH---cCCCcEEEecCC
Confidence            988   4457777664   579999999984

>PRK06046 alanine dehydrogenase; Validated

Probab=97.46  E-value=0.00055  Score=67.47  Aligned_cols=95  Identities=20%  Similarity=0.288  Sum_probs=65.4

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      -++|||+|.|.+|+..++.++...+. +|.+|||+.... +++.+.+    ...  .+.......+++++++ +|+|++|
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~----~~~--~~~~v~~~~~~~~~l~-aDiVv~a  200 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERM----SSV--VGCDVTVAEDIEEACD-CDILVTT  200 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHH----Hhh--cCceEEEeCCHHHHhh-CCEEEEe
Confidence            46899999999999999887544555 577899987542 2222211    110  1112233568899987 9999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|.   +.-++..+.   +|+|+.+..+|.
T Consensus       201 Tps---~~P~~~~~~---l~~g~hV~~iGs  224 (326)
T PRK06046        201 TPS---RKPVVKAEW---IKEGTHINAIGA  224 (326)
T ss_pred             cCC---CCcEecHHH---cCCCCEEEecCC
Confidence            995   346777654   489999888874

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.45  E-value=0.00044  Score=65.97  Aligned_cols=112  Identities=20%  Similarity=0.258  Sum_probs=81.4

Q ss_pred             cccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~I-G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+++|+++.|||-+.| |+++|..| ..-++.|.++..+.                            .++.+..++||+
T Consensus       152 i~l~Gk~~vVVGrS~iVGkPla~lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~ADI  202 (283)
T COG0190         152 IDLRGKNVVVVGRSNIVGKPLALLL-LNANATVTVCHSRT----------------------------KDLASITKNADI  202 (283)
T ss_pred             CCCCCCEEEEECCCCcCcHHHHHHH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCCE
Confidence            4799999999999875 89999998 57899999886532                            367888999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP  319 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTP  319 (386)
                      |+.++-.    .++|..+.   .|+|+++|+++--.+-+          +   ...-||-..+       .....-.+||
T Consensus       203 vv~AvG~----p~~i~~d~---vk~gavVIDVGinrv~~----------~---kl~GDVdf~~-------v~~~a~~iTP  255 (283)
T COG0190         203 VVVAVGK----PHFIKADM---VKPGAVVIDVGINRVND----------G---KLVGDVDFDS-------VKEKASAITP  255 (283)
T ss_pred             EEEecCC----cccccccc---ccCCCEEEecCCccccC----------C---ceEeeccHHH-------HHHhhcccCC
Confidence            9999963    67777544   58999999998644322          3   3444554332       2233447899


Q ss_pred             CCCCCcHHH
Q 016620          320 HIASASKWT  328 (386)
Q Consensus       320 Hia~~t~~~  328 (386)
                      --||--+-+
T Consensus       256 VPGGVGPmT  264 (283)
T COG0190         256 VPGGVGPMT  264 (283)
T ss_pred             CCCccCHHH
Confidence            877765533

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.44  E-value=0.00072  Score=66.65  Aligned_cols=97  Identities=12%  Similarity=0.110  Sum_probs=67.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ..++++|||.|.+|+..++.|+..++. +|.+|+|+.... +++.+.    +...  .+..+....++++.+.+||+|+.
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a-~~~a~~----~~~~--~g~~v~~~~~~~~av~~aDiVvt  200 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKA-EALALQ----LSSL--LGIDVTAATDPRAAMSGADIIVT  200 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHH----HHhh--cCceEEEeCCHHHHhccCCEEEE
Confidence            457899999999999999987434664 699999987542 232221    1111  11223335789999999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+|.   ...+|..+.   +|+|+.+..++.
T Consensus       201 aT~s---~~p~i~~~~---l~~g~~i~~vg~  225 (326)
T TIGR02992       201 TTPS---ETPILHAEW---LEPGQHVTAMGS  225 (326)
T ss_pred             ecCC---CCcEecHHH---cCCCcEEEeeCC
Confidence            9985   345666654   689988877763

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.44  E-value=0.00039  Score=67.52  Aligned_cols=134  Identities=13%  Similarity=0.200  Sum_probs=91.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiVvl~l  244 (386)
                      .+|||||+|++|+-+|+.+ -..|..|+.+||..-....+   .            .+....+.+++++ ++.|+|.+|+
T Consensus        53 l~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa~---~------------yg~~~ft~lhdlcerhpDvvLlct  116 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAAE---K------------YGSAKFTLLHDLCERHPDVVLLCT  116 (480)
T ss_pred             eEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHHH---H------------hcccccccHHHHHhcCCCEEEEEe
Confidence            4799999999999999998 57899999999875332211   1            1122456777766 6789999998


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC--C---CCCCCCCCeEEcC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--K---PGLSEMKNAIVVP  319 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~--~---~~L~~~~nvilTP  319 (386)
                      .- ..+..++-.-=++++|.|++++++-.-.....+++.+-|-+.      .|.....|+.  +   +.-..+|=|+.--
T Consensus       117 si-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd------fDIlctHpmfGPksvnh~wqglpfVydkv  189 (480)
T KOG2380|consen  117 SI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD------FDILCTHPMFGPKSVNHEWQGLPFVYDKV  189 (480)
T ss_pred             hh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc------cceEeecCCcCCCcCCCccccCceEEEEe
Confidence            53 223334333346778999999999888888877777777544      5666666662  2   3334466555554


Q ss_pred             CCC
Q 016620          320 HIA  322 (386)
Q Consensus       320 Hia  322 (386)
                      .++
T Consensus       190 Rig  192 (480)
T KOG2380|consen  190 RIG  192 (480)
T ss_pred             ecc
Confidence            443

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.43  E-value=0.0007  Score=65.53  Aligned_cols=79  Identities=15%  Similarity=0.247  Sum_probs=64.8

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .++.|+++.|||-+. +|+++|.+| ..-|++|+.+...                            ..++++.+++||+
T Consensus       163 i~l~Gk~vvVIGRS~iVGkPla~lL-~~~~ATVtvchs~----------------------------T~nl~~~~~~ADI  213 (299)
T PLN02516        163 IPIKGKKAVVVGRSNIVGLPVSLLL-LKADATVTVVHSR----------------------------TPDPESIVREADI  213 (299)
T ss_pred             CCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCE
Confidence            579999999999964 699999998 5679999988642                            1368899999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |+.++.-    .+++..+.   .|+|+++||+|--.
T Consensus       214 vv~AvGk----~~~i~~~~---vk~gavVIDvGin~  242 (299)
T PLN02516        214 VIAAAGQ----AMMIKGDW---IKPGAAVIDVGTNA  242 (299)
T ss_pred             EEEcCCC----cCccCHHH---cCCCCEEEEeeccc
Confidence            9999964    47888766   57999999998644

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.43  E-value=0.0006  Score=65.62  Aligned_cols=168  Identities=18%  Similarity=0.222  Sum_probs=103.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.|++++..+  ..+++.. ++..+-.  |=|-    |+....+
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDVD----Gl~~~N~  126 (286)
T PRK14184         54 RACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--KDVD----GFHPENM  126 (286)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--cCcc----cCCHhhH
Confidence            44566788887765544 2466766654431     4689998755  4555543 3333222  2221    2211111


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      ..+      ..+-++ +...++.-++.    ++++                     .+.++.||++.|||-+ .+|+++|
T Consensus       127 g~l------~~~~~~-~~PcTp~av~~----lL~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla  174 (286)
T PRK14184        127 GRL------ALGLPG-FRPCTPAGVMT----LLER---------------------YGLSPAGKKAVVVGRSNIVGKPLA  174 (286)
T ss_pred             HHH------hCCCCC-CCCCCHHHHHH----HHHH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            111      112222 34445543332    2221                     1257999999999995 5799999


Q ss_pred             HHHHhc----CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHH
Q 016620          182 RMMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (386)
Q Consensus       182 ~~L~~~----fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~  257 (386)
                      .+| ..    -+++|..+..+.                            .++.+.+++||+|+.+++.    .+++..+
T Consensus       175 ~lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~AvG~----p~li~~~  221 (286)
T PRK14184        175 LML-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAIGR----PRFVTAD  221 (286)
T ss_pred             HHH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCC----CCcCCHH
Confidence            998 45    688988776421                            3688899999999999953    6678887


Q ss_pred             HHhcCCCCcEEEEcCC
Q 016620          258 RLATMKKEAILVNCSR  273 (386)
Q Consensus       258 ~~~~mk~gailIN~aR  273 (386)
                      .+   |+|+++||+|-
T Consensus       222 ~v---k~GavVIDVGi  234 (286)
T PRK14184        222 MV---KPGAVVVDVGI  234 (286)
T ss_pred             Hc---CCCCEEEEeee
Confidence            76   89999999974

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.43  E-value=0.00054  Score=66.31  Aligned_cols=172  Identities=15%  Similarity=0.154  Sum_probs=104.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-----CCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-----~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++.+..++ ..+++|+.+.+..     ..+++++..+  ..+++.. ++.++-.  |=|-    |+....+
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~--KDVD----Gl~~~n~  126 (295)
T PRK14174         54 KSCKEIGMNSTVIELPA-DTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA--KDVD----GFHPENL  126 (295)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--cccc----ccChhhH
Confidence            44566788887766554 3466666644432     3689998755  4555553 3333322  2221    2211111


Q ss_pred             hHHhhCCcEEecC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHH
Q 016620          103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAY  180 (386)
Q Consensus       103 ~~~~~~gI~v~n~-~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~i  180 (386)
                      ..+.      .+. ...+...+|.-++    .+.++                     .+.++.|+++.|||-+ .+|+++
T Consensus       127 g~l~------~~~~~~~~~PcTp~ail----~ll~~---------------------y~i~l~Gk~vvViGrS~iVG~Pl  175 (295)
T PRK14174        127 GRLV------MGHLDKCFVSCTPYGIL----ELLGR---------------------YNIETKGKHCVVVGRSNIVGKPM  175 (295)
T ss_pred             HHHh------cCCCCCCcCCCCHHHHH----HHHHH---------------------hCCCCCCCEEEEECCCCcchHHH
Confidence            1111      111 0123344554332    22221                     1257999999999995 579999


Q ss_pred             HHHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHH
Q 016620          181 ARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (386)
Q Consensus       181 A~~L~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~  257 (386)
                      |.+|.+.   -+++|..+..+.                            .++++.+++||+|+.+++.    .++|..+
T Consensus       176 a~lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~~ADIvI~Avg~----~~li~~~  223 (295)
T PRK14174        176 ANLMLQKLKESNCTVTICHSAT----------------------------KDIPSYTRQADILIAAIGK----ARFITAD  223 (295)
T ss_pred             HHHHHhccccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCc----cCccCHH
Confidence            9987432   478887765321                            3678899999999999964    2778888


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 016620          258 RLATMKKEAILVNCSRGP  275 (386)
Q Consensus       258 ~~~~mk~gailIN~aRg~  275 (386)
                      .+   |+|+++||+|--.
T Consensus       224 ~v---k~GavVIDVgi~~  238 (295)
T PRK14174        224 MV---KPGAVVIDVGINR  238 (295)
T ss_pred             Hc---CCCCEEEEeeccc
Confidence            87   8999999998544

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.43  E-value=0.007  Score=60.17  Aligned_cols=164  Identities=18%  Similarity=0.240  Sum_probs=116.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiVvl  242 (386)
                      ..+|+||+|-||+.+|..+ ..-|.+|.+|+|+.... ++|.+       ..+.. .....+.+++|++   +.=--|++
T Consensus         4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~kt-d~f~~-------~~~~~-k~i~~~~sieefV~~Le~PRkI~l   73 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEKT-DEFLA-------ERAKG-KNIVPAYSIEEFVASLEKPRKILL   73 (473)
T ss_pred             cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHHH-HHHHH-------hCccC-CCccccCcHHHHHHHhcCCceEEE
Confidence            4699999999999999987 47899999999988654 33332       12211 1223456777764   44455555


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (386)
                      .+--... ..-.-++.+..|.+|=++||-+-..--|+.--.++|.+..|...+.-|...|-=.    +.-|.+     |-
T Consensus        74 MVkAG~~-VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA----~~GPSi-----Mp  143 (473)
T COG0362          74 MVKAGTP-VDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGA----RHGPSI-----MP  143 (473)
T ss_pred             EEecCCc-HHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccc----ccCCCc-----CC
Confidence            5543211 1222367888999999999999999999999999999999999999999887421    122332     34


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016620          323 SASKWTREGMATLAALNVLGKIKGYPIW  350 (386)
Q Consensus       323 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~  350 (386)
                      |.+.++++....++ +.|-+-.+|+|+-
T Consensus       144 GG~~eay~~v~pil-~~IaAk~~g~pCc  170 (473)
T COG0362         144 GGQKEAYELVAPIL-TKIAAKVDGEPCC  170 (473)
T ss_pred             CCCHHHHHHHHHHH-HHHHhhcCCCCce
Confidence            67888888887765 6677767788864

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.42  E-value=0.00071  Score=67.60  Aligned_cols=111  Identities=19%  Similarity=0.275  Sum_probs=66.1

Q ss_pred             CCeEEEEecChhHHHHHHHHHhc------CCcEEEEEcCChhhH---HHHHHhhhhhhh--hhcCCCCccccccCCHHHH
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQATR---LEKFVTAYGQFL--KANGEQPVTWKRASSMDEV  233 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~------fg~~V~~~d~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~el  233 (386)
                      -++|+|||.|..|.++|..|+..      ||.+|..|.++..-.   ..+.........  ...-..+.......+++++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            35899999999999999998643      457888887765310   001111000000  0001122223335688899


Q ss_pred             hhhCCEEEEccCCChhhhhcccHHHHh--cCCCCcEEEEcCCCccc
Q 016620          234 LREADVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVI  277 (386)
Q Consensus       234 l~~aDiVvl~lPlt~~t~~li~~~~~~--~mk~gailIN~aRg~~v  277 (386)
                      ++.||+|++++|. ...+.++ .+.-.  .+++++++|+++-|=-.
T Consensus        91 v~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~  134 (365)
T PTZ00345         91 VEDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIV  134 (365)
T ss_pred             HhcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCccc
Confidence            9999999999994 2223332 33323  46667889988776433

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.42  E-value=0.00085  Score=65.53  Aligned_cols=110  Identities=20%  Similarity=0.234  Sum_probs=70.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|+|+|.|.-|.++|+.|+ .-|.+|..|.++++...+-.........-.....+.......+++++++.||+|++.+|
T Consensus         2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence            57999999999999999985 56678888887654322110000000000112233333446789999999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vd  278 (386)
                      . ...+.++ ++.-..+++++.+|+++-|=-.+
T Consensus        81 s-~~~r~v~-~~l~~~l~~~~~iv~~sKGie~~  111 (329)
T COG0240          81 S-QALREVL-RQLKPLLLKDAIIVSATKGLEPE  111 (329)
T ss_pred             h-HHHHHHH-HHHhhhccCCCeEEEEeccccCC
Confidence            5 2233332 23335668999999998875443

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.42  E-value=0.0027  Score=68.99  Aligned_cols=130  Identities=14%  Similarity=0.148  Sum_probs=85.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP--------VTWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (386)
                      ++|+|||.|.||..||..++...|++|+.||++.......  ... .+.... +.+...        .......++ +.+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~  387 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKV-KRRHLKPSERDKQMALISGTTDY-RGF  387 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhcEEEeCCh-HHh
Confidence            6799999999999999987436699999999986532111  111 111111 111100        012223556 457


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      ++||+|+=++|-+.+.+.-+-.+.-+.++++++|...+.+  +....|.+.++. .-..+++.-|.
T Consensus       388 ~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~  450 (708)
T PRK11154        388 KHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFS  450 (708)
T ss_pred             ccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCC
Confidence            9999999999988888877777777889999988654443  455667777754 33567777664

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.41  E-value=0.00074  Score=66.98  Aligned_cols=100  Identities=17%  Similarity=0.181  Sum_probs=69.5

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccH
Q 016620          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (386)
Q Consensus       177 G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~  256 (386)
                      |..+|..|+ ..|.+|++||++.....+...+    .+...+     .....+..+++++||+|++++|....+..++ .
T Consensus        32 G~~MA~~La-~aG~~V~v~Dr~~~~l~~~~~~----~l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~  100 (342)
T PRK12557         32 GSRMAIEFA-EAGHDVVLAEPNRSILSEELWK----KVEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K  100 (342)
T ss_pred             HHHHHHHHH-hCCCeEEEEECCHHHhhHHHHH----HHHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence            788999884 5789999999977531110111    011122     2234578888999999999999655467776 4


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 016620          257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK  287 (386)
Q Consensus       257 ~~~~~mk~gailIN~aRg~~vde-~aL~~aL~  287 (386)
                      .....+++++++||++.+..... +.+.+.+.
T Consensus       101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            67788999999999999876554 55556664

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.36  E-value=0.0013  Score=62.99  Aligned_cols=111  Identities=22%  Similarity=0.240  Sum_probs=70.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiVv  241 (386)
                      ..+++++|+|.|.+|++++..|+ ..|++|++++|+.... ++..+.    ....+.     ....++++. +.++|+|+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L~-~~g~~v~v~~R~~~~~-~~la~~----~~~~~~-----~~~~~~~~~~~~~~DivI  183 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPLL-KADCNVIIANRTVSKA-EELAER----FQRYGE-----IQAFSMDELPLHRVDLII  183 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHHHH----HhhcCc-----eEEechhhhcccCccEEE
Confidence            56789999999999999999984 6789999999886532 221111    111110     011233332 35799999


Q ss_pred             EccCCCh--hhhh-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          242 LHPVLDK--TTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       242 l~lPlt~--~t~~-li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      .++|..-  +... .+.   ...++++.+++|+.-.+. ++ .|.+..++.
T Consensus       184 natp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~-~T-~ll~~A~~~  229 (270)
T TIGR00507       184 NATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPG-ET-PFLAEAKSL  229 (270)
T ss_pred             ECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCC-CC-HHHHHHHHC
Confidence            9999742  1111 222   344788999999987664 33 466666554

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.33  E-value=0.0011  Score=64.30  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=63.2

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      .++.|++|.|||- ..+|+++|.+|.+.   .++.|..+...                            ..++++..++
T Consensus       157 i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~  208 (297)
T PRK14168        157 VETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR----------------------------SKNLARHCQR  208 (297)
T ss_pred             CCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC----------------------------CcCHHHHHhh
Confidence            5799999999998 56799999988432   27889877532                            1367888999


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      ||+|+.++..    .+++..+.   .|+|+++||+|.-.
T Consensus       209 ADIvVsAvGk----p~~i~~~~---ik~gavVIDvGin~  240 (297)
T PRK14168        209 ADILIVAAGV----PNLVKPEW---IKPGATVIDVGVNR  240 (297)
T ss_pred             CCEEEEecCC----cCccCHHH---cCCCCEEEecCCCc
Confidence            9999999964    56787766   57999999998644

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.32  E-value=0.0012  Score=63.72  Aligned_cols=171  Identities=18%  Similarity=0.255  Sum_probs=104.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc----C-CCcEEEecCC--ccccHH-HHHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG----D-KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~----~-~ad~vi~~~~--~~~~~~-~l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+++....++. .+++|+.+.+.    | ..|++++..+  ..+++. +++.++-.  |=|-    |+..+++
T Consensus        54 k~a~~~Gi~~~~~~l~~~-~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--KDVD----Gl~~~N~  126 (293)
T PRK14185         54 KACEECGFKSSLIRYESD-VTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--KDVD----GFHPINV  126 (293)
T ss_pred             HHHHHcCCEEEEEECCCC-CCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--cCcC----CCCHhhH
Confidence            445667888876655443 46777764332    2 4689998754  344443 33333322  2221    2222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC-hhHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G-~IG~~iA  181 (386)
                      ..+.      ..-++ +...+|.-++-++    ++                     .+.++.||++.|||-+ .+|+++|
T Consensus       127 g~l~------~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~GK~vvViGrS~iVGkPla  174 (293)
T PRK14185        127 GRMS------IGLPC-FVSATPNGILELL----KR---------------------YHIETSGKKCVVLGRSNIVGKPMA  174 (293)
T ss_pred             HHHh------CCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            1111      11222 3455555444322    10                     1247999999999995 5799999


Q ss_pred             HHHHhc---CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHH
Q 016620          182 RMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (386)
Q Consensus       182 ~~L~~~---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~  258 (386)
                      .+|.+.   +++.|..+...                            ..++.+..++||+|+.+++.    .++|..+.
T Consensus       175 ~lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~  222 (293)
T PRK14185        175 QLMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECLEADIIIAALGQ----PEFVKADM  222 (293)
T ss_pred             HHHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            988432   37899887532                            24688889999999999974    56777755


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 016620          259 LATMKKEAILVNCSRGP  275 (386)
Q Consensus       259 ~~~mk~gailIN~aRg~  275 (386)
                         .|+|+++||+|--.
T Consensus       223 ---vk~gavVIDvGin~  236 (293)
T PRK14185        223 ---VKEGAVVIDVGTTR  236 (293)
T ss_pred             ---cCCCCEEEEecCcc
Confidence               57999999998643

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.30  E-value=0.0014  Score=64.64  Aligned_cols=96  Identities=16%  Similarity=0.164  Sum_probs=63.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ..++++|+|.|.+|+..+..++...+ -+|.+|+|+... .+++.+.    +...  .+..+....++++++.+||+|++
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~----~~~~--~g~~v~~~~d~~~al~~aDiVi~  203 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAAD----LRAE--LGIPVTVARDVHEAVAGADIIVT  203 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHH----Hhhc--cCceEEEeCCHHHHHccCCEEEE
Confidence            45789999999999998887643355 479999998754 2332221    1111  11223335789999999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      ++|..   ..++..+.   +++|+.+..++
T Consensus       204 aT~s~---~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        204 TTPSE---EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             eeCCC---CcEecHHH---cCCCceEEeeC
Confidence            99853   45665544   46777666543

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.29  E-value=0.001  Score=61.35  Aligned_cols=97  Identities=22%  Similarity=0.304  Sum_probs=61.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG-FKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~-fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|||||+|.||+.+.+.+..+ .+. .+.+||++.+.....         .    ...+.....+++|++.+.|+|+=|
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~---------~----~~~~~~~~s~ide~~~~~DlvVEa   67 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL---------E----ASVGRRCVSDIDELIAEVDLVVEA   67 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH---------H----hhcCCCccccHHHHhhccceeeee
Confidence            3799999999999999987423 234 478999987653221         0    011111236899999999999988


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHH
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~  280 (386)
                      ...  +...-+..   +.++.|.=+|=+|-|.+.|+.
T Consensus        68 AS~--~Av~e~~~---~~L~~g~d~iV~SVGALad~~   99 (255)
T COG1712          68 ASP--EAVREYVP---KILKAGIDVIVMSVGALADEG   99 (255)
T ss_pred             CCH--HHHHHHhH---HHHhcCCCEEEEechhccChH
Confidence            863  22222222   334555555556667776544

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.25  E-value=0.0015  Score=64.87  Aligned_cols=97  Identities=16%  Similarity=0.218  Sum_probs=66.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      -++++|+|.|..++.-++.+..-+.. +|++|+|+.... +++.+.    ++.   .+..+....++++++++||+|+.+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a-~~~~~~----~~~---~~~~v~~~~~~~~av~~ADIIvta  200 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAAT-AKLARN----LAG---PGLRIVACRSVAEAVEGADIITTV  200 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHH-HHHHHH----HHh---cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            46899999999999988766545555 699999987643 233222    111   122233457899999999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|.+ +..-++..+.   +|+|+.+.-+|.
T Consensus       201 T~S~-~~~Pvl~~~~---lkpG~hV~aIGs  226 (346)
T PRK07589        201 TADK-TNATILTDDM---VEPGMHINAVGG  226 (346)
T ss_pred             cCCC-CCCceecHHH---cCCCcEEEecCC
Confidence            9842 2225566654   589998777653

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.25  E-value=0.0013  Score=64.07  Aligned_cols=96  Identities=15%  Similarity=0.167  Sum_probs=67.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      -+++||+|.|..|+.-++.++.-+.. +|.+|+|+.... ++|.+.    ++..  .+.......+.++++.+||+|+.+
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~----~~~~--~~~~v~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAER----FSKE--FGVDIRPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHHh--cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            46899999999999988877544555 699999987653 333322    2211  122233457899999999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|.   +.-++..+.   +|+|+.++-+|.
T Consensus       190 T~s---~~P~~~~~~---l~pg~hV~aiGs  213 (301)
T PRK06407        190 TNS---DTPIFNRKY---LGDEYHVNLAGS  213 (301)
T ss_pred             cCC---CCcEecHHH---cCCCceEEecCC
Confidence            984   457777664   478877777665

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.25  E-value=0.0012  Score=65.53  Aligned_cols=105  Identities=15%  Similarity=0.152  Sum_probs=63.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh-hh-hhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YG-QFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|+|.|.+|..+|..|+ ..| .|..|.++.... +..... .. ..+......+.......++++.++.+|+|+++
T Consensus         8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~~-~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila   84 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAETA-DDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG   84 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHHH-HHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence            57999999999999999985 456 677777655331 111100 00 00000000111122346788889999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +|. ..++..+ ++.-..+++++.+|++.-|=
T Consensus        85 vps-~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         85 VPS-HGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             eCH-HHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence            994 3344433 34445577888888887764

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.25  E-value=0.00088  Score=68.12  Aligned_cols=96  Identities=16%  Similarity=0.267  Sum_probs=64.6

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|+++.|||.|.+|+.+++.| ...|+ ++++++|+.... ..+...+       +.  .......++.+.+.++|+|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~ra-~~La~~~-------~~--~~~~~~~~l~~~l~~aDiV  246 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEKA-QKITSAF-------RN--ASAHYLSELPQLIKKADII  246 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHHh-------cC--CeEecHHHHHHHhccCCEE
Confidence            47899999999999999999998 46775 799999986532 2222211       10  1122235667889999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +.|++.   ...+|..+...  .+.-++||.+=
T Consensus       247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLav  274 (414)
T PRK13940        247 IAAVNV---LEYIVTCKYVG--DKPRVFIDISI  274 (414)
T ss_pred             EECcCC---CCeeECHHHhC--CCCeEEEEeCC
Confidence            999984   34556655543  23346677654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.24  E-value=0.0016  Score=59.77  Aligned_cols=107  Identities=16%  Similarity=0.245  Sum_probs=69.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHH-H---------HhhhhhhhhhcCCCCcccc-
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-F---------VTAYGQFLKANGEQPVTWK-  225 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~---~~~~~~~-~---------~~~~~~~~~~~~~~~~~~~-  225 (386)
                      ..|..++|+|+|.|.+|..+|+.|+ ..|. +++.+|+.   ......+ +         .+...+.+++... ..... 
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp-~~~i~~   94 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP-YTEIEA   94 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC-CCEEEE
Confidence            4588899999999999999999985 5687 69999877   2111000 0         0000011111110 01111 


Q ss_pred             -----ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620          226 -----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (386)
Q Consensus       226 -----~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN  270 (386)
                           ...+++++++++|+|+-| ..+.+++.++..+....++...++..
T Consensus        95 ~~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354        95 YDEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             eeeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                 113456678899999999 57788999998988888887766664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=97.22  E-value=0.00043  Score=63.77  Aligned_cols=151  Identities=20%  Similarity=0.250  Sum_probs=91.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc---C--CCCc-----------ccc
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN---G--EQPV-----------TWK  225 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~---~--~~~~-----------~~~  225 (386)
                      ...-+.|+|+|.|.||..||+.. ..-|.+|+.+|++.....+.. ....+++.+-   +  ..+.           +..
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~~A~-~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~   85 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALSRAT-KAISSSLKRVAKKKKADDPVALEEFVDDTLDRIK   85 (298)
T ss_pred             cccccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHHHHH-HHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHH
Confidence            34456799999999999999985 578999999999876433221 1111222111   1  1111           011


Q ss_pred             ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC
Q 016620          226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY  304 (386)
Q Consensus       226 ~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~  304 (386)
                      ...+++++++.+|+|+-+.--+-+.+.-+-++.=..+|+.++| .|+|+   +...++..++++. -..++|..|.+-|.
T Consensus        86 ~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~~-srf~GlHFfNPvPv  161 (298)
T KOG2304|consen   86 TSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQRP-SRFAGLHFFNPVPV  161 (298)
T ss_pred             HcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccCh-hhhceeeccCCchh
Confidence            2456667778888887666533333322223333446777766 56666   3456788888754 57888998876663


Q ss_pred             CCCCCCCCCCeEEcCCCCC
Q 016620          305 MKPGLSEMKNAIVVPHIAS  323 (386)
Q Consensus       305 ~~~~L~~~~nvilTPHia~  323 (386)
                           .++-.||=|+..+-
T Consensus       162 -----MKLvEVir~~~TS~  175 (298)
T KOG2304|consen  162 -----MKLVEVIRTDDTSD  175 (298)
T ss_pred             -----HHHhhhhcCCCCCH
Confidence                 44445566665543

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.22  E-value=0.002  Score=63.29  Aligned_cols=105  Identities=25%  Similarity=0.304  Sum_probs=62.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-C-CCCccccccCCHHHHh-hhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-G-EQPVTWKRASSMDEVL-READVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~ell-~~aDiVvl  242 (386)
                      ++|+|||.|.+|..+|..|+ ..|.+|..|+|+.... +.... .....+.. + ..+.......++++.+ ..+|+|++
T Consensus         1 MkI~IiGaGa~G~ala~~L~-~~g~~V~l~~r~~~~~-~~i~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliii   77 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALS-SKKISVNLWGRNHTTF-ESINT-KRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIIL   77 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEecCHHHH-HHHHH-cCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEE
Confidence            36999999999999999984 6689999999876421 11100 00000000 0 0111112235677766 58999999


Q ss_pred             ccCCChhhhhcccHHHHh-cCCCCcEEEEcCCCc
Q 016620          243 HPVLDKTTYHLINKERLA-TMKKEAILVNCSRGP  275 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~-~mk~gailIN~aRg~  275 (386)
                      ++|. .++...+ ++... .+++++.+|...-|=
T Consensus        78 avks-~~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         78 AVPT-QQLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             EeCH-HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence            9995 2344443 33333 566777777666664

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.19  E-value=0.0025  Score=64.16  Aligned_cols=102  Identities=19%  Similarity=0.267  Sum_probs=69.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhhCCEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS  241 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiVv  241 (386)
                      -++++|+|.|..++.-++.++.-+.  -+|.+|+|+.... ++|.+.+    .... .+. .+..+.+.++++++||+|+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a-~~f~~~~----~~~~-~~~~~v~~~~s~~eav~~ADIVv  228 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSL-DSFATWV----AETY-PQITNVEVVDSIEEVVRGSDIVT  228 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHH-HHHHHHH----HHhc-CCCceEEEeCCHHHHHcCCCEEE
Confidence            4689999999999999988754453  3899999987643 2333221    1110 011 1334578999999999999


Q ss_pred             EccCCCh---hhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          242 LHPVLDK---TTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       242 l~lPlt~---~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      .|++.+.   .+.-++..+.   +|+|+.++.++.-+
T Consensus       229 taT~s~~~~~s~~Pv~~~~~---lkpG~hv~~ig~~e  262 (379)
T PRK06199        229 YCNSGETGDPSTYPYVKREW---VKPGAFLLMPAACR  262 (379)
T ss_pred             EccCCCCCCCCcCcEecHHH---cCCCcEEecCCccc
Confidence            9998543   3446776654   57999888776644

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.18  E-value=0.0023  Score=60.89  Aligned_cols=104  Identities=13%  Similarity=0.145  Sum_probs=64.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhc--CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~--fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiVv  241 (386)
                      .+|||||+|.||+.+++.+.++  .++++. +|++.... .+.+.          +.    .....+++++ ....|+|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~-~~~~~----------~~----~~~~~~l~~ll~~~~DlVV   67 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADL-PPALA----------GR----VALLDGLPGLLAWRPDLVV   67 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHH-HHHhh----------cc----CcccCCHHHHhhcCCCEEE
Confidence            5899999999999999987432  235544 46665422 11110          00    2235689997 58899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHcC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQN  289 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd---e~aL~~aL~~g  289 (386)
                      =|...  +...-.....   ++.|.-++=.|-|.+.|   ++.|.++.+++
T Consensus        68 E~A~~--~av~e~~~~i---L~~g~dlvv~SvGALaD~~~~~~l~~~A~~~  113 (267)
T PRK13301         68 EAAGQ--QAIAEHAEGC---LTAGLDMIICSAGALADDALRARLIAAAEAG  113 (267)
T ss_pred             ECCCH--HHHHHHHHHH---HhcCCCEEEEChhHhcCHHHHHHHHHHHHhC
Confidence            99874  2222223333   45677777777788877   45555555553

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.18  E-value=0.0022  Score=63.15  Aligned_cols=96  Identities=18%  Similarity=0.242  Sum_probs=70.4

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      -++++|||.|..+..-.+.++.-|+. +|.+|+|++... +++.    +.++..+..  ......+.+++++.||+|+.|
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a----~~l~~~~~~--~v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFA----ARLRKRGGE--AVGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHH----HHHHhhcCc--cceeccCHHHHhhcCCEEEEe
Confidence            35799999999999999887666776 699999987653 2222    122222221  233467899999999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|.+.   -++..+.   ++||+.+..+|.
T Consensus       203 T~s~~---Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         203 TPSTE---PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             cCCCC---CeecHhh---cCCCcEEEecCC
Confidence            99654   7777766   469999999984

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=97.16  E-value=0.0071  Score=60.24  Aligned_cols=157  Identities=19%  Similarity=0.214  Sum_probs=93.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH-----HHhh--hhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK-----FVTA--YGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      .+|||+|+|-||-++|-.++ .-|.+|+++|.+...-..-     +..+  ..+.+++....+ ......+.++ ++.||
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g-~lraTtd~~~-l~~~d   86 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESG-KLRATTDPEE-LKECD   86 (436)
T ss_pred             eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcC-CceEecChhh-cccCC
Confidence            78999999999999999885 6799999999876542110     0000  000000000000 0111234444 56999


Q ss_pred             EEEEccCCChhhh-------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE--Eeecc---CCCCC
Q 016620          239 VISLHPVLDKTTY-------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV--GLDVF---EDEPY  304 (386)
Q Consensus       239 iVvl~lPlt~~t~-------~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga--alDV~---~~EP~  304 (386)
                      ++++|+|. |-+.       .+.+  +..-..||+|.++|==|.-.+=-++.++.-|.+.. .|.  .-|.+   .+|-.
T Consensus        87 v~iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~-sgL~~~~Df~laysPERv  164 (436)
T COG0677          87 VFIICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEER-SGLKFGEDFYLAYSPERV  164 (436)
T ss_pred             EEEEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhc-CCCcccceeeEeeCcccc
Confidence            99999883 4222       1222  23556789999998888877777788888776641 122  23544   44533


Q ss_pred             -CCC---CCCCCCCeEEcCCCCCCcHHHHHHH
Q 016620          305 -MKP---GLSEMKNAIVVPHIASASKWTREGM  332 (386)
Q Consensus       305 -~~~---~L~~~~nvilTPHia~~t~~~~~~~  332 (386)
                       |-.   .+.+.|+|     +||.|+.+.+.+
T Consensus       165 ~PG~~~~el~~~~kV-----IgG~tp~~~e~a  191 (436)
T COG0677         165 LPGNVLKELVNNPKV-----IGGVTPKCAELA  191 (436)
T ss_pred             CCCchhhhhhcCCce-----eecCCHHHHHHH
Confidence             222   45667777     577776654444

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.15  E-value=0.0012  Score=60.77  Aligned_cols=94  Identities=19%  Similarity=0.253  Sum_probs=61.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDi  239 (386)
                      -++.|++|.|||.|.+|..-++.| ..+|++|.++++...+......        ..+  ...+.. ... .+.+..+|+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~--------~~~--~i~~~~~~~~-~~dl~~~~l   72 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLA--------EQG--GITWLARCFD-ADILEGAFL   72 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHH--------HcC--CEEEEeCCCC-HHHhCCcEE
Confidence            358999999999999999999988 5799999999987665443321        111  111211 112 345788999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      |+.+....+-     |......++...++||+
T Consensus        73 Vi~at~d~~l-----n~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        73 VIAATDDEEL-----NRRVAHAARARGVPVNV   99 (205)
T ss_pred             EEECCCCHHH-----HHHHHHHHHHcCCEEEE
Confidence            8888764322     34444545555577775

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.14  E-value=0.0048  Score=57.70  Aligned_cols=117  Identities=19%  Similarity=0.252  Sum_probs=71.2

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC----------hhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      .++.|++|.|.|+|++|+.+|+.| ..+|++|++...+          ...++..+...... +.  ....  . ...+.
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~-l~--~~~~--~-~~~~~   99 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGS-VL--GFPG--A-ERITN   99 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCC-cc--cCCC--c-eecCC
Confidence            468999999999999999999998 5899999955332          11122111111000 00  0000  0 01122


Q ss_pred             HHH-hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       231 ~el-l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      +++ -..||+++-|.+     .+.|+.+...+++ -.+++-.+-+++-  ..-.+.|+++.+.
T Consensus       100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~t--~~a~~~L~~rGi~  154 (227)
T cd01076         100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPTT--PEADEILHERGVL  154 (227)
T ss_pred             ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCCC--HHHHHHHHHCCCE
Confidence            222 247899998886     5567788888786 4477777777773  4455777766544

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.14  E-value=0.00071  Score=55.19  Aligned_cols=89  Identities=22%  Similarity=0.212  Sum_probs=57.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .++|++|.|||.|.+|..=++.| ...|++|+++++.. ...++             .  ..+. ...+++-+..+|+|+
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~-------------~--i~~~-~~~~~~~l~~~~lV~   65 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG-------------L--IQLI-RREFEEDLDGADLVF   65 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT-------------S--CEEE-ESS-GGGCTTESEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh-------------H--HHHH-hhhHHHHHhhheEEE
Confidence            58999999999999999999998 68999999999875 11111             0  1111 123445688899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .+++. ++    +++.....++.--+++|++-
T Consensus        66 ~at~d-~~----~n~~i~~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   66 AATDD-PE----LNEAIYADARARGILVNVVD   92 (103)
T ss_dssp             E-SS--HH----HHHHHHHHHHHTTSEEEETT
T ss_pred             ecCCC-HH----HHHHHHHHHhhCCEEEEECC
Confidence            88874 22    34555555565557888753

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.10  E-value=0.0014  Score=66.02  Aligned_cols=99  Identities=23%  Similarity=0.253  Sum_probs=66.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      +|.++++.|||+|.||.-+|+.| ...| .+|++.+|+.....+ ..       +..+   ..+....++.+.+.++|+|
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA~~-La-------~~~~---~~~~~l~el~~~l~~~DvV  242 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERAEE-LA-------KKLG---AEAVALEELLEALAEADVV  242 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHHHH-HH-------HHhC---CeeecHHHHHHhhhhCCEE
Confidence            48999999999999999999998 4677 579999998765321 11       1112   2233456777889999999


Q ss_pred             EEccCCChhhhhcccHHHHhcC---CCCcEEEEcCCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATM---KKEAILVNCSRGP  275 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~m---k~gailIN~aRg~  275 (386)
                      +.++.   ....+|..+.+...   ++.-++||.+=..
T Consensus       243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiavPR  277 (414)
T COG0373         243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAVPR  277 (414)
T ss_pred             EEecC---CCccccCHHHHHHHHhcccCeEEEEecCCC
Confidence            99975   33555555444332   1124677765543

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.09  E-value=0.0019  Score=63.07  Aligned_cols=122  Identities=16%  Similarity=0.155  Sum_probs=72.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCcc-ccccCCHHHHhhhCCEEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVT-WKRASSMDEVLREADVISL  242 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~l~ell~~aDiVvl  242 (386)
                      .++|+|||.|.||..+|.+|+ ..|.+|.++.|.........    +-.+.. .+..... .....+.+ ....+|+|++
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~-~~g~~V~~~~r~~~~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vil   78 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLA-RAGFDVHFLLRSDYEAVREN----GLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLV   78 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHH-HCCCeEEEEEeCCHHHHHhC----CeEEEeCCCCeeecCceEEcchh-hcCCCCEEEE
Confidence            368999999999999999984 67899999988653321110    000000 0100000 01112333 4678999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaa  295 (386)
                      |++.. ++...+ +..-..+++++.++...-| +-.++.|.+.+-..++.++.
T Consensus        79 avK~~-~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~  128 (313)
T PRK06249         79 GLKTT-ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL  128 (313)
T ss_pred             EecCC-ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence            99854 333322 3344456778888877665 44567777777655655553

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.09  E-value=0.0027  Score=61.95  Aligned_cols=128  Identities=15%  Similarity=0.215  Sum_probs=71.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.+|..+|..++ ..|. +|..+|...........+.+......  ..........+.++ +++||+|+++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~--~~~~~i~~t~d~~~-~~~aDiVIita   77 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEASPVG--GFDTKVTGTNNYAD-TANSDIVVITA   77 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhhhcc--CCCcEEEecCCHHH-hCCCCEEEEcC
Confidence            47999999999999999874 4443 89999986543221212222111110  11112222357777 78999999998


Q ss_pred             CCChh-----------hhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE--ee
Q 016620          245 VLDKT-----------TYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD  297 (386)
Q Consensus       245 Plt~~-----------t~~li~~--~~~~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~gaa--lD  297 (386)
                      +....           +..++..  +.+....+.+++|+++-.-=+-...+.+.  +...++.|.+  ||
T Consensus        78 g~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        78 GLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            73211           1122211  22333457889999876433333344444  3334455654  56

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.08  E-value=0.0058  Score=59.09  Aligned_cols=79  Identities=20%  Similarity=0.180  Sum_probs=52.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.+++|.|+|.|.+|++++..| ...|+ +|+++||+.... +...+.    +.... .........++.+.+.++|+|
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~ka-~~la~~----l~~~~-~~~~~~~~~~~~~~~~~aDiV  196 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPARA-AALADE----LNARF-PAARATAGSDLAAALAAADGL  196 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HHHHHH----HHhhC-CCeEEEeccchHhhhCCCCEE
Confidence            36788999999999999999998 46787 799999986542 222111    11110 001112234556677889999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      +.++|..
T Consensus       197 InaTp~G  203 (284)
T PRK12549        197 VHATPTG  203 (284)
T ss_pred             EECCcCC
Confidence            9999863

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.06  E-value=0.0052  Score=57.08  Aligned_cols=114  Identities=18%  Similarity=0.230  Sum_probs=68.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCCh---------hhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      .++.|++|.|.|+|++|+.+|+.| ...|++|++ .|.+.         ....+. ...      ..+..........+-
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~-~~~------~~~~~~~~~~~~~~~   90 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINY-AVA------LGGSARVKVQDYFPG   90 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHH-HHh------hCCccccCcccccCc
Confidence            468999999999999999999998 578887665 45443         022111 110      001110000001111


Q ss_pred             HHH-hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620          231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       231 ~el-l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~  290 (386)
                      +++ -..||+++-|.+     .+.|+.+....++ -.+++-.+-+++-+  .-.+.|++..
T Consensus        91 ~~l~~~~~DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~G  143 (217)
T cd05211          91 EAILGLDVDIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERG  143 (217)
T ss_pred             ccceeccccEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCC
Confidence            222 247999999987     3477888877776 44777778888755  3355666554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.05  E-value=0.004  Score=61.21  Aligned_cols=131  Identities=17%  Similarity=0.256  Sum_probs=71.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +..++|+|||.|.+|..+|..++ ..| .++..+|.+.........+.... ....+ .........+.+ .+++||+|+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl~~~-~~~~~-~~~~i~~~~d~~-~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDLKHF-STLVG-SNINILGTNNYE-DIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHHhhh-ccccC-CCeEEEeCCCHH-HhCCCCEEE
Confidence            45679999999999999998764 445 68999998764321111111100 00001 111222235666 679999999


Q ss_pred             Ecc--CCChh-hh--------hccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCcceEE--ee
Q 016620          242 LHP--VLDKT-TY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD  297 (386)
Q Consensus       242 l~l--Plt~~-t~--------~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~--~g~i~gaa--lD  297 (386)
                      ++.  |..+. ++        .++.  .+.+....|.+++|+++-..=+-...+.+...  ..++.|.+  +|
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence            998  44331 11        1110  12333345788888886533333333433321  24455555  55

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.05  E-value=0.0057  Score=60.01  Aligned_cols=87  Identities=16%  Similarity=0.184  Sum_probs=57.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .+|||+|+|.||+.+++.+.+.-++++.+ +|++.......               ........+.++++.+.|+|++|+
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~---------------~~~v~~~~d~~e~l~~iDVViIct   68 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT---------------ETPVYAVADDEKHLDDVDVLILCM   68 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh---------------cCCccccCCHHHhccCCCEEEEcC
Confidence            58999999999999999874444788775 68874222110               011222356777888999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      |....     -+.....++.|.=+|+..
T Consensus        69 Ps~th-----~~~~~~~L~aG~NVV~s~   91 (324)
T TIGR01921        69 GSATD-----IPEQAPYFAQFANTVDSF   91 (324)
T ss_pred             CCccC-----HHHHHHHHHcCCCEEECC
Confidence            96332     133444566676677664

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.04  E-value=0.002  Score=63.51  Aligned_cols=93  Identities=16%  Similarity=0.107  Sum_probs=59.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|++|.|||.|.||+.+|+.| ...|. +|++.+|+...  ..+.+                 .....-+...++|+|
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~--~~~~~-----------------~~~~~~~~~~~~DvV  230 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLT--LPYRT-----------------VVREELSFQDPYDVI  230 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCccc--cchhh-----------------hhhhhhhcccCCCEE
Confidence            48999999999999999999998 56774 69999998642  11000                 000111345789999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +.|..-|.....++..+.+...++ -+|||.+=..
T Consensus       231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPR  264 (338)
T PRK00676        231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPR  264 (338)
T ss_pred             EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCC
Confidence            987432333345555555554332 2777765443

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.02  E-value=0.0027  Score=58.29  Aligned_cols=77  Identities=16%  Similarity=0.236  Sum_probs=51.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      -++.|++|.|||.|.+|...++.| ...|++|+++++.....+.+...        .+  ...+....-.++.+..+|+|
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~--------~~--~i~~~~~~~~~~~l~~adlV   74 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVE--------EG--KIRWKQKEFEPSDIVDAFLV   74 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHh--------CC--CEEEEecCCChhhcCCceEE
Confidence            469999999999999999999987 57899999999875443332211        11  11111111113457889999


Q ss_pred             EEccCCCh
Q 016620          241 SLHPVLDK  248 (386)
Q Consensus       241 vl~lPlt~  248 (386)
                      +.++....
T Consensus        75 iaaT~d~e   82 (202)
T PRK06718         75 IAATNDPR   82 (202)
T ss_pred             EEcCCCHH
Confidence            99887543

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.98  E-value=0.0017  Score=54.47  Aligned_cols=96  Identities=17%  Similarity=0.279  Sum_probs=53.3

Q ss_pred             eEEEEe-cChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       167 ~vgIvG-~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      +|+||| .|.+|+.+.++|++...+++.. ++++.... ..+...++   ...+........ .+. +.+.++|+|++|+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g-~~~~~~~~---~~~~~~~~~~~~-~~~-~~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAG-KPLSEVFP---HPKGFEDLSVED-ADP-EELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTT-SBHHHTTG---GGTTTEEEBEEE-TSG-HHHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccC-Ceeehhcc---ccccccceeEee-cch-hHhhcCCEEEecC
Confidence            699999 9999999999997767777554 44443110 00101110   000111111111 233 4459999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |... +..+ ....   .++|..+|+.|.
T Consensus        75 ~~~~-~~~~-~~~~---~~~g~~ViD~s~   98 (121)
T PF01118_consen   75 PHGA-SKEL-APKL---LKAGIKVIDLSG   98 (121)
T ss_dssp             CHHH-HHHH-HHHH---HHTTSEEEESSS
T ss_pred             chhH-HHHH-HHHH---hhCCcEEEeCCH
Confidence            9422 2222 1222   478889999875

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.92  E-value=0.0056  Score=59.27  Aligned_cols=80  Identities=16%  Similarity=0.241  Sum_probs=49.6

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChh--hHHHHHHhhhhhhhhhcCCC-Cc---cccccCCHHHHh
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQ-PV---TWKRASSMDEVL  234 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~l~ell  234 (386)
                      .+.|+++.|+|.|.+|++++..|+ ..|++ |++++|+..  .+.++..+.    +...... ..   ......++++.+
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La-~~G~~~V~I~~R~~~~~~~a~~l~~~----l~~~~~~~~~~~~d~~~~~~~~~~~  197 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCA-LDGAKEITIFNIKDDFYERAEQTAEK----IKQEVPECIVNVYDLNDTEKLKAEI  197 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCchHHHHHHHHHHH----HhhcCCCceeEEechhhhhHHHhhh
Confidence            468899999999999999999874 78886 999999752  222221111    1111100 00   011112344556


Q ss_pred             hhCCEEEEccCC
Q 016620          235 READVISLHPVL  246 (386)
Q Consensus       235 ~~aDiVvl~lPl  246 (386)
                      ..+|+|+.++|.
T Consensus       198 ~~~DilINaTp~  209 (289)
T PRK12548        198 ASSDILVNATLV  209 (289)
T ss_pred             ccCCEEEEeCCC
Confidence            778999999985

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.83  E-value=0.0028  Score=60.39  Aligned_cols=183  Identities=15%  Similarity=0.150  Sum_probs=94.9

Q ss_pred             EEEEec-ChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       168 vgIvG~-G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      |+|||. |.+|..+|..|+ ..|    -++..||.+.........+ ... ..... .........++++.+++||+|++
T Consensus         1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~l~~~~~d-l~~-~~~~~-~~~~i~~~~d~~~~~~~aDiVv~   76 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEKLKGVAMD-LQD-AVEPL-ADIKVSITDDPYEAFKDADVVII   76 (263)
T ss_pred             CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCcccchHHHHH-HHH-hhhhc-cCcEEEECCchHHHhCCCCEEEE
Confidence            589999 999999999874 445    6899999876432111111 000 00111 12233345677899999999999


Q ss_pred             ccCC--Ch---------hhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCcceEE-eeccCCCCCC-
Q 016620          243 HPVL--DK---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG-LDVFEDEPYM-  305 (386)
Q Consensus       243 ~lPl--t~---------~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~a--L~~g~i~gaa-lDV~~~EP~~-  305 (386)
                      +.-.  .+         .+..++.  .+.+.+..+.++++|++-.-=+-...+.+.  +...++.|.+ +|...-.-.. 
T Consensus        77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~r~~~~la  156 (263)
T cd00650          77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPIRFRRILA  156 (263)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHHHHHHHHH
Confidence            6521  10         1111221  123333458899999963222333344444  3456788888 8764311100 


Q ss_pred             ---CCCCCCCC-CeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016620          306 ---KPGLSEMK-NAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (386)
Q Consensus       306 ---~~~L~~~~-nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  354 (386)
                         .-+--+.. .|+=.-|-+....+...+++..+.+-++.++.++.....+|
T Consensus       157 ~~l~v~~~~v~~~v~G~hg~~~~~~~s~~~~a~~~~~ii~ai~~~~~~~~~v~  209 (263)
T cd00650         157 EKLGVDPDDVKVYILGEHGGSQVPDWSTVRIATSIADLIRSLLNDEGEILPVG  209 (263)
T ss_pred             HHhCCCccceEEEEEEcCCCceEeccccchHHHHHHHHHHHHHcCCCEEEEEE
Confidence               00000000 01111111111122122277778888888888877555554

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.76  E-value=0.0049  Score=63.92  Aligned_cols=75  Identities=21%  Similarity=0.212  Sum_probs=50.9

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      +..+.|++++|+|.|.+|++++..| ...|++|++++|+.... +...+.       .+.   ......++.+ +.++|+
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~-------~~~---~~~~~~~~~~-l~~~Di  393 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASR-------CQG---KAFPLESLPE-LHRIDI  393 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHH-------hcc---ceechhHhcc-cCCCCE
Confidence            3567899999999999999999998 57899999999876432 111111       000   0111122222 568999


Q ss_pred             EEEccCCC
Q 016620          240 ISLHPVLD  247 (386)
Q Consensus       240 Vvl~lPlt  247 (386)
                      |++|+|..
T Consensus       394 VInatP~g  401 (477)
T PRK09310        394 IINCLPPS  401 (477)
T ss_pred             EEEcCCCC
Confidence            99999964

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.76  E-value=0.0062  Score=58.24  Aligned_cols=109  Identities=17%  Similarity=0.156  Sum_probs=59.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .+|||+|+|.||+.+++.+.+.-++++. ++++........  .       ..+   .+.....+++++-.+.|+|+.|.
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~--~-------~~~---~~~~~~~d~~~l~~~~DvVve~t   69 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVR--R-------ALG---EAVRVVSSVDALPQRPDLVVECA   69 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHh--h-------hhc---cCCeeeCCHHHhccCCCEEEECC
Confidence            4799999999999999987433255543 333322211100  0       000   01223467888755689999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM  291 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde---~aL~~aL~~g~i  291 (386)
                      |...  ..   +-....++.|.-++-.+-|.+.|.   +.|.++.+++..
T Consensus        70 ~~~~--~~---e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~  114 (265)
T PRK13303         70 GHAA--LK---EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA  114 (265)
T ss_pred             CHHH--HH---HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence            8532  21   222223444544444444544443   456666666543

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.75  E-value=0.029  Score=55.02  Aligned_cols=121  Identities=12%  Similarity=0.017  Sum_probs=75.4

Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhh------H---HHHHHhhhhhhhhhcCCCC--------ccccccC--CHHHHhhh
Q 016620          176 IGSAYARMMVEGFKMNLIYYDLYQAT------R---LEKFVTAYGQFLKANGEQP--------VTWKRAS--SMDEVLRE  236 (386)
Q Consensus       176 IG~~iA~~L~~~fg~~V~~~d~~~~~------~---~~~~~~~~~~~~~~~~~~~--------~~~~~~~--~l~ell~~  236 (386)
                      ||..||..++ ..|.+|..||++...      .   ..+.....-+.+...+...        .......  ++.+.+++
T Consensus         1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~   79 (314)
T PRK08269          1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALAD   79 (314)
T ss_pred             CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhcc
Confidence            6899999875 679999999998732      0   1111111001111111110        0111122  36688899


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      ||+|+-++|-+.+.+.-+-.+..+.++++++|...+  +.+....|.+.++. .=...++..|.
T Consensus        80 aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSnt--S~~~~~~la~~~~~-p~r~~g~Hf~~  140 (314)
T PRK08269         80 ADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTT--STFLVTDLQRHVAH-PERFLNAHWLN  140 (314)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcc--ccCCHHHHHhhcCC-cccEEEEecCC
Confidence            999999999999988888888888999999985443  34556677776643 22455565554

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.71  E-value=0.0078  Score=49.66  Aligned_cols=107  Identities=24%  Similarity=0.317  Sum_probs=62.6

Q ss_pred             eEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      +|||||+|.+|+...+.+.+. -+.++. ++|+++... +.+.+.       .+     ...+.+++++++  +.|+|++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~-~~~~~~-------~~-----~~~~~~~~~ll~~~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERA-EAFAEK-------YG-----IPVYTDLEELLADEDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHH-------TT-----SEEESSHHHHHHHTTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHH-HHHHHH-------hc-----ccchhHHHHHHHhhcCCEEEE
Confidence            699999999999998776433 466765 678876542 222111       11     224678999998  7899999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~-aRg~~vde~aL~~aL~~g~  290 (386)
                      +.|...  ..-+-...+++=+  .+++.- ---.+-+.+.|.++.++.+
T Consensus        69 ~tp~~~--h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~~~  113 (120)
T PF01408_consen   69 ATPPSS--HAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKEKG  113 (120)
T ss_dssp             ESSGGG--HHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred             ecCCcc--hHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence            999522  2222233332211  355542 1113345555565555443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.69  E-value=0.011  Score=49.87  Aligned_cols=111  Identities=25%  Similarity=0.311  Sum_probs=60.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|+|+|+ |+||+.+++.+...-++++. ++++.......+   -   ...-.+..+.+.....++++++.++|+|+-.
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d---~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDf   74 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---D---VGELAGIGPLGVPVTDDLEELLEEADVVIDF   74 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---B---CHHHCTSST-SSBEBS-HHHHTTH-SEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---h---hhhhhCcCCcccccchhHHHhcccCCEEEEc
Confidence            37999999 99999999987544788854 556655211000   0   0001122233344568999999999999877


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      .  +|+...-.-+..+   +.|.-+|-...|---++.+.++.+.
T Consensus        75 T--~p~~~~~~~~~~~---~~g~~~ViGTTG~~~~~~~~l~~~a  113 (124)
T PF01113_consen   75 T--NPDAVYDNLEYAL---KHGVPLVIGTTGFSDEQIDELEELA  113 (124)
T ss_dssp             S---HHHHHHHHHHHH---HHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred             C--ChHHhHHHHHHHH---hCCCCEEEECCCCCHHHHHHHHHHh
Confidence            6  3443322222232   3466666666666433434444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.64  E-value=0.012  Score=60.31  Aligned_cols=120  Identities=11%  Similarity=0.088  Sum_probs=71.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-cC----------ChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL----------YQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (386)
                      .++.|++|.|.|+|++|+.+|+.| ..+|++|++. |.          ... .+.++.+.....+...... .+. ...+
T Consensus       228 ~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~-~L~~~k~~~~~~l~~~~~~-~~~-~~i~  303 (445)
T PRK09414        228 DSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLE-KLKEIKEVRRGRISEYAEE-FGA-EYLE  303 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHH-HHHHHHHhcCCchhhhhhh-cCC-eecC
Confidence            468999999999999999999998 6899999988 51          221 1111111000001000000 000 1123


Q ss_pred             HHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       230 l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      .++++ ..|||++-|..     .+.|+.+....++  +-.+++-.+-|++  +.+-.+.|.++.|
T Consensus       304 ~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI  361 (445)
T PRK09414        304 GGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGV  361 (445)
T ss_pred             CccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCc
Confidence            34443 37999998875     5667777666663  2348888888888  3334566766644

>PLN02477 glutamate dehydrogenase

Probab=96.59  E-value=0.018  Score=58.38  Aligned_cols=117  Identities=26%  Similarity=0.336  Sum_probs=72.2

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCCh---------hhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      .++.|++|.|.|+|++|+.+|+.| ...|++|++. |.+.         ...+.++..... .+.  +. + +.. ..+.
T Consensus       202 ~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g-~l~--~~-~-~a~-~i~~  274 (410)
T PLN02477        202 KSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGG-GLK--GF-P-GGD-PIDP  274 (410)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcC-chh--cc-c-cce-EecC
Confidence            479999999999999999999998 5789999944 5430         111111111000 000  00 0 011 1122


Q ss_pred             HHH-hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       231 ~el-l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      +++ ...||+++-|.-     .+.|+++...+++ -.+++-.+-+++ . .+-.+.|++..|.
T Consensus       275 ~e~l~~~~DvliP~Al-----~~~I~~~na~~i~-ak~I~egAN~p~-t-~ea~~~L~~rGI~  329 (410)
T PLN02477        275 DDILVEPCDVLIPAAL-----GGVINKENAADVK-AKFIVEAANHPT-D-PEADEILRKKGVV  329 (410)
T ss_pred             ccceeccccEEeeccc-----cccCCHhHHHHcC-CcEEEeCCCCCC-C-HHHHHHHHHCCcE
Confidence            232 357999887753     5678888888875 458888899998 3 3345777776543

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.59  E-value=0.012  Score=57.84  Aligned_cols=75  Identities=20%  Similarity=0.293  Sum_probs=46.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCC-CCccccccCCHHHHhhhCCEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+++|+|||.|.+|..+|-.|+ ..|.  ++..+|.+.......-.+..    +.... ..... ...+. +.+++||+|
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~-~~~~~~el~L~D~~~~~~~g~~~Dl~----~~~~~~~~~~i-~~~~~-~~~~~adiv   77 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALV-NQGIADELVIIDINKEKAEGDAMDLS----HAVPFTSPTKI-YAGDY-SDCKDADLV   77 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCCchhHHHHHHHH----hhccccCCeEE-EeCCH-HHhCCCCEE
Confidence            5679999999999999998874 4555  89999986543222222211    01111 11111 22344 457999999


Q ss_pred             EEccC
Q 016620          241 SLHPV  245 (386)
Q Consensus       241 vl~lP  245 (386)
                      +++.-
T Consensus        78 Iitag   82 (315)
T PRK00066         78 VITAG   82 (315)
T ss_pred             EEecC
Confidence            98754

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.58  E-value=0.012  Score=53.79  Aligned_cols=91  Identities=16%  Similarity=0.291  Sum_probs=59.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++++|||- |.+|+.+++.+ +..|..|+                                        +++||+|++|+
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~-~~~g~~v~----------------------------------------~~~~DlVilav   39 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSIL-DDNGLGVY----------------------------------------IKKADHAFLSV   39 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHH-HhCCCEEE----------------------------------------ECCCCEEEEeC
Confidence            37999988 99999999998 67888774                                        24799999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC--C---CCCCCCCeEEcC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--P---GLSEMKNAIVVP  319 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~--~---~L~~~~nvilTP  319 (386)
                      |.. .+..++     ..+.  .+++|++.-+-    .+.++         ..++....|+.-  .   .|+  .++++++
T Consensus        40 Pv~-~~~~~i-----~~~~--~~v~Dv~SvK~----~i~~~---------~~~~vg~HPMfGp~~a~~~lf--~~~iv~~   96 (197)
T PRK06444         40 PID-AALNYI-----ESYD--NNFVEISSVKW----PFKKY---------SGKIVSIHPLFGPMSYNDGVH--RTVIFIN   96 (197)
T ss_pred             CHH-HHHHHH-----HHhC--CeEEeccccCH----HHHHh---------cCCEEecCCCCCCCcCccccc--ceEEEEC
Confidence            963 333333     2232  37899988553    12221         235666777732  1   243  4777664


Q ss_pred             C
Q 016620          320 H  320 (386)
Q Consensus       320 H  320 (386)
                      .
T Consensus        97 ~   97 (197)
T PRK06444         97 D   97 (197)
T ss_pred             C
Confidence            3

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.52  E-value=0.013  Score=55.71  Aligned_cols=66  Identities=21%  Similarity=0.279  Sum_probs=45.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|+|+|+ |.||+.+++.+.+.-++++.+ +|+.......            .  ...+.....+++++++.+|+|+.+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~------------~--~~~~i~~~~dl~~ll~~~DvVid~   67 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVG------------Q--GALGVAITDDLEAVLADADVLIDF   67 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccc------------c--CCCCccccCCHHHhccCCCEEEEC
Confidence            47999998 999999999874334688665 6765532110            0  111122357899999899999988


Q ss_pred             cC
Q 016620          244 PV  245 (386)
Q Consensus       244 lP  245 (386)
                      +|
T Consensus        68 t~   69 (257)
T PRK00048         68 TT   69 (257)
T ss_pred             CC
Confidence            76

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.51  E-value=0.012  Score=57.98  Aligned_cols=38  Identities=21%  Similarity=0.331  Sum_probs=33.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~  202 (386)
                      .|++|+|+|+|..|....+. ++++|++|+++|++.++.
T Consensus       166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~  203 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKL  203 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHH
Confidence            58999999999999888887 589999999999987653

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=96.51  E-value=0.06  Score=52.95  Aligned_cols=165  Identities=15%  Similarity=0.148  Sum_probs=115.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aDiVvl  242 (386)
                      ..+|++|++-||+.++-.+ ..-|..|.+|+|+.+..+ ++.+.      ++.  ......+.|+++++   +.--.|++
T Consensus         7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skvD-~flan------eak--~~~i~ga~S~ed~v~klk~PR~iil   76 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKVD-EFLAN------EAK--GTKIIGAYSLEDFVSKLKKPRVIIL   76 (487)
T ss_pred             cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhHH-HHHHH------hhc--CCcccCCCCHHHHHHhcCCCcEEEE
Confidence            4689999999999999886 478999999999886533 23221      111  22233456888875   44556666


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (386)
                      .+-.... ...+-++....|.+|-++|+-+-..--|+.-=.+.|....|...+.-|...|--..    --|.  +   +-
T Consensus        77 lvkAG~p-VD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR----~GPS--l---Mp  146 (487)
T KOG2653|consen   77 LVKAGAP-VDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGAR----YGPS--L---MP  146 (487)
T ss_pred             EeeCCCc-HHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccc----cCCc--c---CC
Confidence            5543322 34444778889999999999999999999999999999989999999998874321    1121  1   23


Q ss_pred             CCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 016620          323 SASKWTREGMATLAALNVLGKIKGYPIW  350 (386)
Q Consensus       323 ~~t~~~~~~~~~~~~~ni~~~~~g~~~~  350 (386)
                      |.+.+++.++..++..-....-+|+|+-
T Consensus       147 Gg~~~Awp~ik~ifq~iaakv~~~epCc  174 (487)
T KOG2653|consen  147 GGSKEAWPHIKDIFQKIAAKVSDGEPCC  174 (487)
T ss_pred             CCChHHHHHHHHHHHHHHHHhcCCCCCe
Confidence            6677888888777655444444778754

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.51  E-value=0.01  Score=59.64  Aligned_cols=111  Identities=18%  Similarity=0.087  Sum_probs=68.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|.|||.|.||+.+|..|+ .-| .+|++.||+.....+. .+...+   +.............+.+++++.|+|+.|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la-~~~d~~V~iAdRs~~~~~~i-~~~~~~---~v~~~~vD~~d~~al~~li~~~d~VIn~~   76 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLA-QNGDGEVTIADRSKEKCARI-AELIGG---KVEALQVDAADVDALVALIKDFDLVINAA   76 (389)
T ss_pred             CcEEEECCchhHHHHHHHHH-hCCCceEEEEeCCHHHHHHH-Hhhccc---cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence            57999999999999999986 445 8999999997653321 110000   00011111222346789999999999999


Q ss_pred             CCChhhhhcccHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          245 VLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       245 Plt~~t~~li~~~~~-~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      |..-   +   ...+ +.++.|.-.++++-.+--- -++-+..++
T Consensus        77 p~~~---~---~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~  114 (389)
T COG1748          77 PPFV---D---LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKK  114 (389)
T ss_pred             Cchh---h---HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHH
Confidence            9532   2   2333 3457777788877655432 334444433

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.49  E-value=0.44  Score=47.17  Aligned_cols=106  Identities=12%  Similarity=0.151  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+.|.+|+++|=+  ++..+.+..+ ..||++|.+..|..-...+...+...+..+..+   ..+....++++.+++||+
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv  228 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKESG---ARITVTDDIDKAVKGVDF  228 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4789999999986  5788888876 579999999987532111111100000011111   223345899999999999


Q ss_pred             EEEcc----CCCh---hh------hhcccHHHHhcC-CCCcEEEEc
Q 016620          240 ISLHP----VLDK---TT------YHLINKERLATM-KKEAILVNC  271 (386)
Q Consensus       240 Vvl~l----Plt~---~t------~~li~~~~~~~m-k~gailIN~  271 (386)
                      |..-.    ....   +.      ...++++.++.+ |++++|.-+
T Consensus       229 Vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~  274 (334)
T PRK01713        229 VHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHC  274 (334)
T ss_pred             EEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECC
Confidence            98743    1100   11      123667777765 677777654

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.49  E-value=0.019  Score=55.81  Aligned_cols=75  Identities=15%  Similarity=0.351  Sum_probs=45.2

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.+|..+|..++. +++ +|+.+|+..........+.... ..... .........+.+ .+++||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~-~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEA-APVEG-FDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhh-hhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence            589999999999999998753 234 9999998654322211111111 00001 111222234554 479999999986

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.49  E-value=0.0092  Score=49.82  Aligned_cols=96  Identities=11%  Similarity=0.120  Sum_probs=53.5

Q ss_pred             eEEEEec-ChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEEEE
Q 016620          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (386)
Q Consensus       167 ~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++||+|. |.+|+.+++.|.+.-+.++.+. +++.... ......++      .....  ......+++  ..++|+|++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~DvV~~   71 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAG-KRVSEAGP------HLKGEVVLELEPEDFE--ELAVDIVFL   71 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcC-cCHHHHCc------ccccccccccccCChh--hcCCCEEEE
Confidence            5899995 9999999998743336777666 4332110 00000000      00000  000112332  258999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+|... +...+. .....+++|.++|+++.
T Consensus        72 ~~~~~~-~~~~~~-~~~~~~~~g~~viD~s~  100 (122)
T smart00859       72 ALPHGV-SKEIAP-LLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             cCCcHH-HHHHHH-HHHhhhcCCCEEEECCc
Confidence            999643 333322 23456799999999974

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.46  E-value=0.027  Score=53.47  Aligned_cols=121  Identities=13%  Similarity=0.099  Sum_probs=72.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcC--------Chh--hHHHHHHh---hhhhhhhhcC-CCCccccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--------YQA--TRLEKFVT---AYGQFLKANG-EQPVTWKR  226 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~--------~~~--~~~~~~~~---~~~~~~~~~~-~~~~~~~~  226 (386)
                      .++.|+||.|.|+|++|+.+|+.| ...|++|++...        ..-  +.+....+   ...+.+.... ..+ ... 
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~-~a~-  110 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYG-TAK-  110 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCC-CCE-
Confidence            579999999999999999999998 689999995432        100  01100000   0000000000 000 011 


Q ss_pred             cCCHHHH-hhhCCEEEEccCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          227 ASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       227 ~~~l~el-l~~aDiVvl~lPlt~~t~~li~~~~~~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      ..+.+++ -..|||++-|.     +.+.|+++...+++  +-.+++-.+-|++-.  +-.+.|.++.+
T Consensus       111 ~~~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI  171 (254)
T cd05313         111 YFEGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGV  171 (254)
T ss_pred             EeCCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCc
Confidence            1122333 35799998775     47889998888884  345888888888755  34466766644

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.45  E-value=0.59  Score=45.66  Aligned_cols=77  Identities=19%  Similarity=0.167  Sum_probs=49.7

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +.|.+|+++|= +++.++.+..+ ..||++|.+..|..-...+.+.+...+.....+   ..+....++++.+++||+|.
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy  221 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIY  221 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence            78999999997 67888888876 589999999987543211111110000001111   12334579999999999998


Q ss_pred             Ec
Q 016620          242 LH  243 (386)
Q Consensus       242 l~  243 (386)
                      .-
T Consensus       222 ~~  223 (304)
T TIGR00658       222 TD  223 (304)
T ss_pred             Ec
Confidence            74

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.44  E-value=0.011  Score=52.09  Aligned_cols=72  Identities=17%  Similarity=0.215  Sum_probs=49.2

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhhCC
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREAD  238 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aD  238 (386)
                      .-.++|++|.|||-|.+|...++.| ...|++|.++++........           ..  ...+.. ..+ ++-+.++|
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~~l~~-----------l~--~i~~~~-~~~~~~dl~~a~   72 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICKEMKE-----------LP--YITWKQ-KTFSNDDIKDAH   72 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCHHHHh-----------cc--CcEEEe-cccChhcCCCce
Confidence            3579999999999999999999988 57999999998765432221           00  011111 111 23367899


Q ss_pred             EEEEccCC
Q 016620          239 VISLHPVL  246 (386)
Q Consensus       239 iVvl~lPl  246 (386)
                      +|+.++..
T Consensus        73 lViaaT~d   80 (157)
T PRK06719         73 LIYAATNQ   80 (157)
T ss_pred             EEEECCCC
Confidence            99988864

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.43  E-value=0.014  Score=57.35  Aligned_cols=78  Identities=17%  Similarity=0.243  Sum_probs=48.2

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +..++|+|||.|.+|..+|..++ ..| ++|+.+|.+.........+..... . ............+. +.+++||+|+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~~-~-~~~~~~~I~~~~d~-~~l~~aDiVI   79 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHSN-V-IAGSNSKVIGTNNY-EDIAGSDVVI   79 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhhh-h-ccCCCeEEEECCCH-HHhCCCCEEE
Confidence            45579999999999999998764 445 489999987764221122211110 0 00111123323566 4679999999


Q ss_pred             Ecc
Q 016620          242 LHP  244 (386)
Q Consensus       242 l~l  244 (386)
                      ++.
T Consensus        80 ~ta   82 (321)
T PTZ00082         80 VTA   82 (321)
T ss_pred             ECC
Confidence            976

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.38  E-value=0.012  Score=53.95  Aligned_cols=98  Identities=23%  Similarity=0.282  Sum_probs=59.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh--HH-HHH-----------HhhhhhhhhhcCCCCcccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--RL-EKF-----------VTAYGQFLKANGEQPVTWK  225 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~--~~-~~~-----------~~~~~~~~~~~~~~~~~~~  225 (386)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-+  .+ .++           .+...+.+++... .....
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np-~v~i~   94 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNS-DIQVT   94 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCC-CCEEE
Confidence            4689999999999999999999985 6777 79999876311  00 000           0000011111100 00000


Q ss_pred             ----c--cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          226 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       226 ----~--~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                          .  ..++++.++++|+|+.|+. +.+++.++++...+.
T Consensus        95 ~~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~  135 (202)
T TIGR02356        95 ALKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVAL  135 (202)
T ss_pred             EehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence                1  1235677899999988875 466777777655543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.35  E-value=0.64  Score=46.11  Aligned_cols=78  Identities=12%  Similarity=0.123  Sum_probs=49.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCccccccCCHHHHhhhCCE
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+.|.+|+++|= .++..+++..+ ..+|++|.++.|..-...+.+.+.    ++. ....+..+....+++|.++++|+
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~----~~~~~~~~g~~~~~~~d~~eav~~aDv  225 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAI----AEENCEVSGGSVLVTDDVDEAVKDADF  225 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHH----HHHHHHhcCCeEEEEcCHHHHhCCCCE
Confidence            589999999997 57778888876 579999999987532111111110    000 00011123345799999999999


Q ss_pred             EEEcc
Q 016620          240 ISLHP  244 (386)
Q Consensus       240 Vvl~l  244 (386)
                      |..-.
T Consensus       226 vy~~~  230 (338)
T PRK02255        226 VYTDV  230 (338)
T ss_pred             EEEcc
Confidence            98833

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.34  E-value=0.009  Score=57.96  Aligned_cols=37  Identities=19%  Similarity=0.383  Sum_probs=32.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+.+||+|+|.+|.--.+. +++||++|+++|+..++
T Consensus       181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~k  217 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKK  217 (360)
T ss_pred             CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchh
Confidence            89999999999988766676 68999999999987644

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.33  E-value=0.09  Score=50.55  Aligned_cols=192  Identities=21%  Similarity=0.207  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC----Cc-------E
Q 016620          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N  191 (386)
Q Consensus       123 vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f----g~-------~  191 (386)
                      +|=.+++-+|+..|-                     .|+.|...+|.|+|.|.-|-.+|+.|. ..    |.       +
T Consensus         4 Ta~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~   61 (279)
T cd05312           4 TAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKK   61 (279)
T ss_pred             HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCe
Confidence            455677778887772                     235789999999999999999999874 33    65       8


Q ss_pred             EEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEEccCCChhhhhcccHHHHhcCC-
Q 016620          192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK-  263 (386)
Q Consensus       192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl~lPlt~~t~~li~~~~~~~mk-  263 (386)
                      ++.+|+..-     ..+..+...|.   +. ...    ....+|.|+++  +.|+++-+--    .-++|+++.++.|. 
T Consensus        62 i~~vD~~Gll~~~r~~l~~~~~~~a---~~-~~~----~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~  129 (279)
T cd05312          62 IWLVDSKGLLTKDRKDLTPFKKPFA---RK-DEE----KEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAK  129 (279)
T ss_pred             EEEEcCCCeEeCCCCcchHHHHHHH---hh-cCc----ccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHh
Confidence            999987621     11222222221   11 100    12368999999  8899887542    24799999999998 


Q ss_pred             --CCcEEEEcCCCcccCHHHHHHHHH--cCC-cceEEeeccCCCCCC-CCCCCCCCCeEEcCCCCCCc-----HHHHHHH
Q 016620          264 --KEAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASAS-----KWTREGM  332 (386)
Q Consensus       264 --~gailIN~aRg~~vde~aL~~aL~--~g~-i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t-----~~~~~~~  332 (386)
                        +..++.=.|....--|..=.++.+  +|+ |.+.+.-.-..+.-- ....-+..|+++-|-++-..     ....+.|
T Consensus       130 ~~~~PIIFaLSNPt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m  209 (279)
T cd05312         130 SNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEM  209 (279)
T ss_pred             cCCCCEEEECCCcCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHH
Confidence              889999988876533333333333  354 333332111111000 01234677999999886522     1223566


Q ss_pred             HHHHHHHHHHHHcCCC
Q 016620          333 ATLAALNVLGKIKGYP  348 (386)
Q Consensus       333 ~~~~~~ni~~~~~g~~  348 (386)
                      ...+++-|-.+..-+.
T Consensus       210 ~~aAA~aLA~~~~~~~  225 (279)
T cd05312         210 FLAAAEALASLVTDEE  225 (279)
T ss_pred             HHHHHHHHHHhCCccc
Confidence            6666777777655443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.32  E-value=0.61  Score=46.11  Aligned_cols=79  Identities=19%  Similarity=0.209  Sum_probs=51.2

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+.|.+|+++|-+  ++..+++..+ ..||++|.+..|..-...+.+.+...+..+..+   .......++++++++||+
T Consensus       152 ~l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDv  227 (331)
T PRK02102        152 PLKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADV  227 (331)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            3789999999987  7888888876 589999999987543211111111000011112   123345789999999999


Q ss_pred             EEEcc
Q 016620          240 ISLHP  244 (386)
Q Consensus       240 Vvl~l  244 (386)
                      |..-.
T Consensus       228 vyt~~  232 (331)
T PRK02102        228 IYTDV  232 (331)
T ss_pred             EEEcC
Confidence            98854

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.31  E-value=0.0076  Score=52.06  Aligned_cols=76  Identities=21%  Similarity=0.361  Sum_probs=47.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|+|||. |.+|+.+|-.|.. +++-++..+|+........-.+..+.  .  ..............+.+++||+|+++
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~--~--~~~~~~~~i~~~~~~~~~~aDivvit   76 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHA--S--APLPSPVRITSGDYEALKDADIVVIT   76 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHH--H--HGSTEEEEEEESSGGGGTTESEEEET
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhh--h--hhcccccccccccccccccccEEEEe
Confidence            47999999 9999999987643 67778999999865322222221100  0  01111111223556778999999999


Q ss_pred             cC
Q 016620          244 PV  245 (386)
Q Consensus       244 lP  245 (386)
                      .-
T Consensus        77 ag   78 (141)
T PF00056_consen   77 AG   78 (141)
T ss_dssp             TS
T ss_pred             cc
Confidence            73

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.31  E-value=0.047  Score=48.09  Aligned_cols=104  Identities=17%  Similarity=0.240  Sum_probs=67.1

Q ss_pred             CCCeEEEEe--cChhHHHHHHHHHhcCCcEEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       164 ~g~~vgIvG--~G~IG~~iA~~L~~~fg~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .|++|+++|  .+++..+++..+ ..||+++.+..|..-  +....+.+...+.....+   .......+++|.++++|+
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv   76 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV   76 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred             CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence            488999999  389999999987 589999999988762  222222211111111111   112334799999999999


Q ss_pred             EEEccCC----Chhh-------hhcccHHHHhcCCCCcEEEEc
Q 016620          240 ISLHPVL----DKTT-------YHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       240 Vvl~lPl----t~~t-------~~li~~~~~~~mk~gailIN~  271 (386)
                      |..-.-.    .+..       ...++.+.++.+|++++|.-+
T Consensus        77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~  119 (158)
T PF00185_consen   77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHP  119 (158)
T ss_dssp             EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEES
T ss_pred             EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeC
Confidence            9777654    1111       145788888888888888776

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.28  E-value=0.0098  Score=54.92  Aligned_cols=95  Identities=19%  Similarity=0.281  Sum_probs=67.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  239 (386)
                      -++.|++|.|||-|..|..=++.| ...|++|+++.++..+++..+...       ..   ..+. ...+.++ +..+++
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~~-------~~---i~~~~~~~~~~~-~~~~~l   75 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIEE-------GK---IKWIEREFDAED-LDDAFL   75 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHHh-------cC---cchhhcccChhh-hcCceE
Confidence            469999999999999999999988 489999999998875544433221       11   1111 1223344 445999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      |+.+++..+     +|++.+..+++-.++||+.
T Consensus        76 viaAt~d~~-----ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          76 VIAATDDEE-----LNERIAKAARERRILVNVV  103 (210)
T ss_pred             EEEeCCCHH-----HHHHHHHHHHHhCCceecc
Confidence            999998433     4677777777777888873

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.25  E-value=0.029  Score=45.92  Aligned_cols=84  Identities=17%  Similarity=0.121  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcc
Q 016620          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (386)
Q Consensus       175 ~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li  254 (386)
                      +-+..+++.| +..|++|.+|||..........      .+     ..+.....++++.++.+|+|+++.+. ++-..+-
T Consensus        17 Sp~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~------~~-----~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~   83 (106)
T PF03720_consen   17 SPALELIEEL-KERGAEVSVYDPYVDEEEIKEL------GK-----LEGVEVCDDLEEALKGADAVVLATDH-DEFRELD   83 (106)
T ss_dssp             -HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHH------CH-----HHCEEEESSHHHHHTTESEEEESS---GGGGCCG
T ss_pred             CHHHHHHHHH-HHCCCEEEEECCccChHHHHhh------CC-----ccceEEecCHHHHhcCCCEEEEEecC-HHHhccC
Confidence            3567788888 6889999999998765432110      00     01123356899999999999999985 3333332


Q ss_pred             cHHHHhcCCCCcEEEEc
Q 016620          255 NKERLATMKKEAILVNC  271 (386)
Q Consensus       255 ~~~~~~~mk~gailIN~  271 (386)
                      -.+....|+++.+++++
T Consensus        84 ~~~~~~~~~~~~~iiD~  100 (106)
T PF03720_consen   84 WEEIAKLMRKPPVIIDG  100 (106)
T ss_dssp             HHHHHHHSCSSEEEEES
T ss_pred             HHHHHHhcCCCCEEEEC
Confidence            34455678889999997

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK12862 malic enzyme; Reviewed

Probab=96.24  E-value=0.11  Score=56.77  Aligned_cols=186  Identities=19%  Similarity=0.237  Sum_probs=118.6

Q ss_pred             CcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 016620          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (386)
Q Consensus       109 gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f  188 (386)
                      +|++.|..-   +.+|=.+++-+++.+|-                     .|+.+...+|.|.|.|.-|-.+|+.| ...
T Consensus       161 ~ip~f~DD~---~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~~  215 (763)
T PRK12862        161 KIPVFHDDQ---HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VSL  215 (763)
T ss_pred             CCceEecCc---ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HHc
Confidence            589999744   34566688888888872                     23678999999999999999999998 467


Q ss_pred             Cc---EEEEEcCChh-----hH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHH
Q 016620          189 KM---NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (386)
Q Consensus       189 g~---~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~  259 (386)
                      |.   +++.+|+..-     .. +..+-..|.   +.        ....+|+|+++.+|+++-+--     -+.++++.+
T Consensus       216 G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a---~~--------~~~~~l~e~~~~~~v~iG~s~-----~g~~~~~~v  279 (763)
T PRK12862        216 GVKRENIWVTDIKGVVYEGRTELMDPWKARYA---QK--------TDARTLAEVIEGADVFLGLSA-----AGVLKPEMV  279 (763)
T ss_pred             CCCcccEEEEcCCCeeeCCCCccccHHHHHHh---hh--------cccCCHHHHHcCCCEEEEcCC-----CCCCCHHHH
Confidence            88   7999995421     00 111111110   11        012589999999999886542     479999999


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHHc--CCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCc-----HHHHHHH
Q 016620          260 ATMKKEAILVNCSRGPVIDEVALVEHLKQ--NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS-----KWTREGM  332 (386)
Q Consensus       260 ~~mk~gailIN~aRg~~vde~aL~~aL~~--g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t-----~~~~~~~  332 (386)
                      +.|.+..++.=.|....  |-.=.+|.+.  |.|.+-+-   ...|      =+..|+++-|-++-..     ....+.|
T Consensus       280 ~~M~~~piifalsNP~~--E~~p~~a~~~~~~~i~atGr---s~~p------~Q~NN~~~FPgi~~g~l~~~a~~i~~~m  348 (763)
T PRK12862        280 KKMAPRPLIFALANPTP--EILPEEARAVRPDAIIATGR---SDYP------NQVNNVLCFPYIFRGALDVGATTINEEM  348 (763)
T ss_pred             HHhccCCEEEeCCCCcc--cCCHHHHHHhcCCEEEEECC---cCCC------CcccceeeccchhhhHHhcCCeeCCHHH
Confidence            99999999999888764  2222223333  33333331   1111      3567999999876422     1223445


Q ss_pred             HHHHHHHHHHHHcC
Q 016620          333 ATLAALNVLGKIKG  346 (386)
Q Consensus       333 ~~~~~~ni~~~~~g  346 (386)
                      ...+++-|-.+..-
T Consensus       349 ~~aaa~ala~~~~~  362 (763)
T PRK12862        349 KIAAVRAIAELARE  362 (763)
T ss_pred             HHHHHHHHHhcccc
Confidence            55555555554443

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.22  E-value=0.013  Score=56.61  Aligned_cols=79  Identities=18%  Similarity=0.119  Sum_probs=50.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|+++.|||.|.+|++++..| ...|+ +|++++|+..+. ++..+.+    ...... .......++.+.+.++|+|
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~ka-~~La~~~----~~~~~~-~~~~~~~~~~~~~~~~DiV  194 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDKL-SRLVDLG----VQVGVI-TRLEGDSGGLAIEKAAEVL  194 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHHH-HHHHHHh----hhcCcc-eeccchhhhhhcccCCCEE
Confidence            36789999999999999999988 47887 699999986542 2211111    000000 0000012334556789999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      +.|+|..
T Consensus       195 InaTp~g  201 (282)
T TIGR01809       195 VSTVPAD  201 (282)
T ss_pred             EECCCCC
Confidence            9999963

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.21  E-value=0.63  Score=45.45  Aligned_cols=74  Identities=18%  Similarity=0.181  Sum_probs=50.3

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +.|.+|+++|= +++.++.+..+ ..+|++|.+..|..-.......+.+   ....|   ..+....+++++++++|+|.
T Consensus       150 l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~---~~~~g---~~~~~~~d~~~a~~~aDvvy  222 (304)
T PRK00779        150 LKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEKI---AKETG---ASIEVTHDPKEAVKGADVVY  222 (304)
T ss_pred             cCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHH---HHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence            78999999998 78899999887 5899999999875422111111100   11111   12334579999999999998


Q ss_pred             Ec
Q 016620          242 LH  243 (386)
Q Consensus       242 l~  243 (386)
                      .-
T Consensus       223 ~~  224 (304)
T PRK00779        223 TD  224 (304)
T ss_pred             ec
Confidence            75

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.21  E-value=0.025  Score=55.14  Aligned_cols=101  Identities=19%  Similarity=0.270  Sum_probs=57.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc-ccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-WKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|+|||.|.+|+.+|..|+ ..|  -++..+|++.........+..    +.....+.. .....+.+ .+++||+|++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~-~~g~~~ei~l~D~~~~~~~~~a~dL~----~~~~~~~~~~~i~~~~~~-~l~~aDIVIi   74 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLV-NQGIADELVLIDINEEKAEGEALDLE----DALAFLPSPVKIKAGDYS-DCKDADIVVI   74 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCcchhhHhHhhHH----HHhhccCCCeEEEcCCHH-HhCCCCEEEE
Confidence            47999999999999999874 556  489999987654221111100    000000110 11123444 4789999999


Q ss_pred             ccCCCh---hhh--------hccc--HHHHhcCCCCcEEEEcC
Q 016620          243 HPVLDK---TTY--------HLIN--KERLATMKKEAILVNCS  272 (386)
Q Consensus       243 ~lPlt~---~t~--------~li~--~~~~~~mk~gailIN~a  272 (386)
                      +.....   .++        .++.  .+.+....+.+++++++
T Consensus        75 tag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          75 TAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            986521   111        1111  12344456788999886

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.20  E-value=0.032  Score=57.50  Aligned_cols=119  Identities=19%  Similarity=0.224  Sum_probs=70.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      -+.+++|+|+|+|..|.++|+.| +..|++|.++|............    .++..+   ..........+.+..+|+|+
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~~~~~~~~~~~~dlVV   82 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSN----ELKELG---VKLVLGENYLDKLDGFDVIF   82 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHH----HHHhCC---CEEEeCCCChHHhccCCEEE
Confidence            36788999999999999999998 68999999999765321111000    011112   11111122245567899998


Q ss_pred             EccCCChhhh-----------hcccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          242 LHPVLDKTTY-----------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       242 l~lPlt~~t~-----------~li~~-~~~-~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ... .=+.+.           .++++ +.+ +..+...+-|--+.|+.--..-|...|+..
T Consensus        83 ~Sp-gi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~  142 (458)
T PRK01710         83 KTP-SMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEE  142 (458)
T ss_pred             ECC-CCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence            873 222221           12222 122 223434566777889887777777777653

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.19  E-value=0.022  Score=53.92  Aligned_cols=86  Identities=14%  Similarity=0.197  Sum_probs=58.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      .++-|+|.|.+++++|+.+ +.+|++|.++|+++....                         .  ..+..++.+....|
T Consensus       101 ~~L~IfGaG~va~~la~la-~~lGf~V~v~D~R~~~~~-------------------------~--~~~~~~~~~~~~~~  152 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRAL-APLPCRVTWVDSREAEFP-------------------------E--DLPDGVATLVTDEP  152 (246)
T ss_pred             CEEEEECCcHHHHHHHHHH-hcCCCEEEEEeCCccccc-------------------------c--cCCCCceEEecCCH
Confidence            4799999999999999985 799999999997643100                         0  00123333322222


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                                .+.+..+.+.+.+|=+.|+.-.|.+.|..+|++.
T Consensus       153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~  186 (246)
T TIGR02964       153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRG  186 (246)
T ss_pred             ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCC
Confidence                      2233335567788888898889999999998543

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.17  E-value=0.034  Score=52.57  Aligned_cols=121  Identities=22%  Similarity=0.309  Sum_probs=71.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEE--------cCChhh--HHHHHHhhhhhhhhhcCC-CCccccccCCH
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQFLKANGE-QPVTWKRASSM  230 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~--------d~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l  230 (386)
                      +++|++|.|-|+|.+|+.+|+.| ...|++|++.        |+..-+  .+....+.....+..... .+.... ..+-
T Consensus        29 ~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~-~~~~  106 (244)
T PF00208_consen   29 SLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAE-YIPN  106 (244)
T ss_dssp             SSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSE-EECH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCccccccccccccee-Eecc
Confidence            69999999999999999999998 5789998876        544321  111111111000000000 000011 1122


Q ss_pred             H-HHh-hhCCEEEEccCCChhhhhcccHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          231 D-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEA-ILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       231 ~-ell-~~aDiVvl~lPlt~~t~~li~~~~~~-~mk~ga-ilIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      + +++ ..||+++-|.-     .+.|+++... .++.|+ +++-.+-+.+- .++.. .|++..|
T Consensus       107 ~~~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI  164 (244)
T PF00208_consen  107 DDEILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGI  164 (244)
T ss_dssp             HCHGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-
T ss_pred             ccccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCC
Confidence            2 454 68999998843     5677888877 777665 67777788775 44444 7776654

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=96.17  E-value=0.015  Score=55.15  Aligned_cols=106  Identities=22%  Similarity=0.204  Sum_probs=63.2

Q ss_pred             cccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      .|.+++..+|+|+|+ |.||..+||.|+ +-+++....-|....+-.+....    +.+.    .+.....+++..+-+.
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la-~~~~~~~ll~r~aea~~rq~l~~----l~e~----~~~~~i~s~d~~~~~e  231 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLA-PKVGVKELLLRDAEARNRQRLTL----LQEE----LGRGKIMSLDYALPQE  231 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhc-cccCEEEEecccHHhhhhhhhhh----cccc----cCCCeeeecccccccc
Confidence            468999999999999 999999999984 66666555544333221111110    1111    1111234555444445


Q ss_pred             CEE-EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016620          238 DVI-SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       238 DiV-vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde  279 (386)
                      |++ .++.-   .+-..|+.+.   +|||++++|-++..=+|+
T Consensus       232 ~i~v~vAs~---~~g~~I~pq~---lkpg~~ivD~g~P~dvd~  268 (351)
T COG5322         232 DILVWVASM---PKGVEIFPQH---LKPGCLIVDGGYPKDVDT  268 (351)
T ss_pred             ceEEEEeec---CCCceechhh---ccCCeEEEcCCcCccccc
Confidence            554 44322   2345566644   689999999998765543

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.14  E-value=0.055  Score=52.41  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccC---CHHHHhh
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEVLR  235 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~ell~  235 (386)
                      .+.|+++.|+|.|..+++++-.|+ ..|+ +|++++|+..  .+.+...+.+    ..............   .+++.+.
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~-~~g~~~i~i~nRt~~~~~ka~~la~~~----~~~~~~~~~~~~~~~~~~l~~~~~  195 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRV----NENTDCVVTVTDLADQQAFAEALA  195 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCccHHHHHHHHHHHh----hhccCceEEEechhhhhhhhhhcc
Confidence            478899999999999999998774 5676 7999999853  2222221111    11000000111111   1334566


Q ss_pred             hCCEEEEccCC
Q 016620          236 EADVISLHPVL  246 (386)
Q Consensus       236 ~aDiVvl~lPl  246 (386)
                      ++|+|+.++|.
T Consensus       196 ~aDivINaTp~  206 (288)
T PRK12749        196 SADILTNGTKV  206 (288)
T ss_pred             cCCEEEECCCC
Confidence            79999999986

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.11  E-value=0.032  Score=55.35  Aligned_cols=80  Identities=23%  Similarity=0.216  Sum_probs=45.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhh-hh-h---cC--CCCccccccCCHHHHhhhCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LK-A---NG--EQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~-~~-~---~~--~~~~~~~~~~~l~ell~~aD  238 (386)
                      .+|||+|+|.||+.+++.+...-++++.+........ ..+...+.+. .. .   ..  ..........++++++..+|
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~-~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD   80 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDY-EARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD   80 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHH-HHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence            3799999999999999987544578877654322211 1111110000 00 0   00  00011222346788888999


Q ss_pred             EEEEccCC
Q 016620          239 VISLHPVL  246 (386)
Q Consensus       239 iVvl~lPl  246 (386)
                      +|+.|.|.
T Consensus        81 VVIdaT~~   88 (341)
T PRK04207         81 IVVDATPG   88 (341)
T ss_pred             EEEECCCc
Confidence            99999985

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.11  E-value=0.031  Score=57.21  Aligned_cols=119  Identities=11%  Similarity=0.106  Sum_probs=69.1

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhhhhhhhcCCCCc----ccc
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPV----TWK  225 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~----~~~  225 (386)
                      |.+|.|++|.|.|+|++|+..|+.| ..+|++|++.+.+..          ..+. +...+..... ......    +. 
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~~~-~~v~~~~~~~ga-  298 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLYR-GRIREYAEKYGC-  298 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhhcC-CchhhhHhhcCC-
Confidence            3579999999999999999999998 589999998543111          1111 1000000000 000000    01 


Q ss_pred             ccCCHHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHc
Q 016620          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       226 ~~~~l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~-ga-ilIN~aRg~~vde~aL~~aL~~  288 (386)
                      ...+.++++ ..|||++=|.     +.+.|+++...+++. |. +++-.+-| ++..++.....+.
T Consensus       299 ~~i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~r  358 (444)
T PRK14031        299 KYVEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDA  358 (444)
T ss_pred             EEcCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHC
Confidence            112333432 4689888665     477888888888865 44 56666777 5555555434443

>PRK12861 malic enzyme; Reviewed

Probab=96.06  E-value=0.14  Score=55.87  Aligned_cols=186  Identities=16%  Similarity=0.143  Sum_probs=118.4

Q ss_pred             CcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 016620          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (386)
Q Consensus       109 gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f  188 (386)
                      .|++.|..-   +.+|=.+++-+++.+|-                     .|+.+...+|.|.|.|.-|-.+|+.| ...
T Consensus       157 ~ipvf~DD~---qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~  211 (764)
T PRK12861        157 KIPVFHDDQ---HGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL  211 (764)
T ss_pred             CCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence            799999744   34566688888888872                     23678999999999999999999988 567


Q ss_pred             Cc---EEEEEcCChh-----hH-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHH
Q 016620          189 KM---NLIYYDLYQA-----TR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (386)
Q Consensus       189 g~---~V~~~d~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~  259 (386)
                      |.   +++.+|+..-     .. +..+-..|    .+.       ....+|.|+++.+|+++-+-     +.+.++++.+
T Consensus       212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~----a~~-------~~~~~L~eai~~advliG~S-----~~g~ft~e~v  275 (764)
T PRK12861        212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERF----AQE-------TDARTLAEVIGGADVFLGLS-----AGGVLKAEML  275 (764)
T ss_pred             CCChhhEEEEcCCCeeeCCCcccCCHHHHHH----Hhh-------cCCCCHHHHHhcCCEEEEcC-----CCCCCCHHHH
Confidence            87   7999995431     00 11111111    111       01258999999999887653     1589999999


Q ss_pred             hcCCCCcEEEEcCCCccc-CHHHHHHHHHc-CC-cceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCc-----HHHHHH
Q 016620          260 ATMKKEAILVNCSRGPVI-DEVALVEHLKQ-NP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS-----KWTREG  331 (386)
Q Consensus       260 ~~mk~gailIN~aRg~~v-de~aL~~aL~~-g~-i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t-----~~~~~~  331 (386)
                      +.|.+.+++.=.|....- ..+   ++.+. |+ |.+-      ....  . -=+..|+++-|-++-..     ....+.
T Consensus       276 ~~Ma~~PIIFaLsNPtpE~~pe---~a~~~~g~aivaT------Grs~--~-pnQ~NN~l~FPgi~~Gal~~~a~~I~~~  343 (764)
T PRK12861        276 KAMAARPLILALANPTPEIFPE---LAHATRDDVVIAT------GRSD--Y-PNQVNNVLCFPYIFRGALDVGATTITRE  343 (764)
T ss_pred             HHhccCCEEEECCCCCccCCHH---HHHhcCCCEEEEe------CCcC--C-CCccceeeecchhhHHHHHcCCccCCHH
Confidence            999999999998887641 112   22223 33 2221      1111  1 13567999999876422     122345


Q ss_pred             HHHHHHHHHHHHHcCC
Q 016620          332 MATLAALNVLGKIKGY  347 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g~  347 (386)
                      |...+++-|-.+..-+
T Consensus       344 M~~aAa~alA~~~~~~  359 (764)
T PRK12861        344 MEIAAVHAIAGLAEEE  359 (764)
T ss_pred             HHHHHHHHHHhhCCcc
Confidence            5555556666655443

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.05  E-value=0.018  Score=57.09  Aligned_cols=97  Identities=22%  Similarity=0.215  Sum_probs=60.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh------------HHH----HHHhhhhhhhhhcCCCCcc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------RLE----KFVTAYGQFLKANGEQPVT  223 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~------------~~~----~~~~~~~~~~~~~~~~~~~  223 (386)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|+..-+            .+.    ...+...+.+++... ...
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp-~v~   97 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINS-EVE   97 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCC-CcE
Confidence            5699999999999999999999985 6776 78888876411            000    000000011111110 011


Q ss_pred             cc------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620          224 WK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (386)
Q Consensus       224 ~~------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~  260 (386)
                      ..      ...+++++++++|+|+.++ .+.+++.+++.-...
T Consensus        98 i~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~  139 (338)
T PRK12475         98 IVPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK  139 (338)
T ss_pred             EEEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence            11      1134678899999999998 467788887765544

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.04  E-value=0.16  Score=55.33  Aligned_cols=164  Identities=22%  Similarity=0.295  Sum_probs=109.2

Q ss_pred             CCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 016620          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (386)
Q Consensus       108 ~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~  187 (386)
                      ..|++.|..-   +.+|=.+++-+++.+|-                     .|+.+...+|.|.|.|.-|-.+|+.| ..
T Consensus       152 ~~ip~f~DD~---~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~  206 (752)
T PRK07232        152 MDIPVFHDDQ---HGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-VA  206 (752)
T ss_pred             cCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-HH
Confidence            4689999744   34566688888888872                     23578999999999999999999998 46


Q ss_pred             CCc---EEEEEcCChh---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHH
Q 016620          188 FKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (386)
Q Consensus       188 fg~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~  258 (386)
                      .|.   +++.+|+..-   .+   +..+-..|    .+.       ....+|+|+++.+|+++-+-     +.+.++++.
T Consensus       207 ~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~----a~~-------~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~~  270 (752)
T PRK07232        207 LGAKKENIIVCDSKGVIYKGRTEGMDEWKAAY----AVD-------TDARTLAEAIEGADVFLGLS-----AAGVLTPEM  270 (752)
T ss_pred             cCCCcccEEEEcCCCeecCCCcccccHHHHHH----hcc-------CCCCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence            777   7999986521   00   11111111    110       12358999999999887653     157999999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHc--CCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCC
Q 016620          259 LATMKKEAILVNCSRGPVIDEVALVEHLKQ--NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS  323 (386)
Q Consensus       259 ~~~mk~gailIN~aRg~~vde~aL~~aL~~--g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~  323 (386)
                      ++.|.+..++.=.|....  |-.=.+|.+.  |.|.+-+   -...|      =+..|+++-|-++-
T Consensus       271 v~~M~~~piifalsNP~~--E~~p~~a~~~~~~~i~atG---rs~~p------nQ~NN~~~FPgi~~  326 (752)
T PRK07232        271 VKSMADNPIIFALANPDP--EITPEEAKAVRPDAIIATG---RSDYP------NQVNNVLCFPYIFR  326 (752)
T ss_pred             HHHhccCCEEEecCCCCc--cCCHHHHHHhcCCEEEEEC---CcCCC------CcccceeecchhhH
Confidence            999999999999988775  2222233333  3333333   11112      35678999997754

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.02  E-value=0.024  Score=55.10  Aligned_cols=74  Identities=14%  Similarity=0.264  Sum_probs=43.4

Q ss_pred             EEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       168 vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      |+|||.|.+|..+|..++. +++ +|+.+|.+.........+.... .... ..........+.+ .+++||+|+++..
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~-~~~~-~~~~~I~~t~d~~-~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQA-APIL-GSDTKVTGTNDYE-DIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHh-hhhc-CCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence            6899999999999988742 334 9999998764321111111110 0110 1111222234554 4799999999763

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.02  E-value=1.1  Score=43.90  Aligned_cols=65  Identities=18%  Similarity=0.349  Sum_probs=48.3

Q ss_pred             cCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       163 l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      +.|++|+++|=   |++..+++..+ ..||+++.+..|..-.  .            ....  ......+++|.++++|+
T Consensus       154 l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~--~------------~~~~--~~~~~~d~~ea~~~aDv  216 (305)
T PRK00856        154 LEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLL--P------------EGMP--EYGVHTDLDEVIEDADV  216 (305)
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccC--c------------cccc--ceEEECCHHHHhCCCCE
Confidence            78999999987   58999999987 5899999999874321  0            0000  12345789999999999


Q ss_pred             EEEcc
Q 016620          240 ISLHP  244 (386)
Q Consensus       240 Vvl~l  244 (386)
                      |....
T Consensus       217 vyt~~  221 (305)
T PRK00856        217 VMMLR  221 (305)
T ss_pred             EEECC
Confidence            97743

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.02  E-value=0.96  Score=44.76  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=49.9

Q ss_pred             cCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          163 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       163 l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      +.|++|+++|-+  ++..+.+..+ ..||++|.+..|..-...+.+.+...+..+..+   .......++++.+++||+|
T Consensus       153 l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvv  228 (332)
T PRK04284        153 YKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDVI  228 (332)
T ss_pred             cCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEE
Confidence            789999999975  7888888886 579999999987532111111110000001111   1233457999999999999


Q ss_pred             EEc
Q 016620          241 SLH  243 (386)
Q Consensus       241 vl~  243 (386)
                      ..-
T Consensus       229 y~~  231 (332)
T PRK04284        229 YTD  231 (332)
T ss_pred             EEC
Confidence            885

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.01  E-value=0.19  Score=47.59  Aligned_cols=192  Identities=14%  Similarity=0.101  Sum_probs=115.3

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCc-----------E
Q 016620          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------N  191 (386)
Q Consensus       123 vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-----------~  191 (386)
                      +|=.+++-+|+.+|-                     .|+.|.+.+|.|+|.|.-|-.+|+.|. ..++           +
T Consensus         4 TaaV~lAgllnAlk~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~   61 (254)
T cd00762           4 TASVAVAGLLAALKV---------------------TKKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKR   61 (254)
T ss_pred             hHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhcc
Confidence            455677778887772                     235789999999999999999999884 4444           6


Q ss_pred             EEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEEccCCChhhhhcccHHHHhcCC-
Q 016620          192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK-  263 (386)
Q Consensus       192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl~lPlt~~t~~li~~~~~~~mk-  263 (386)
                      ++.+|+..-     ..+..+...+.+..+.       .....+|.|+++  +.|+++-..    ..-++|.++.++.|. 
T Consensus        62 i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-------~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~  130 (254)
T cd00762          62 IWXVDRKGLLVKNRKETCPNEYHLARFANP-------ERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAE  130 (254)
T ss_pred             EEEECCCCeEeCCCCccCHHHHHHHHHcCc-------ccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhh
Confidence            888887621     0011111110000010       112368999999  999998754    235799999999998 


Q ss_pred             --CCcEEEEcCCCcccCHHHHHHHHHc--C-CcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcH-----HHHHHH
Q 016620          264 --KEAILVNCSRGPVIDEVALVEHLKQ--N-PMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK-----WTREGM  332 (386)
Q Consensus       264 --~gailIN~aRg~~vde~aL~~aL~~--g-~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~-----~~~~~~  332 (386)
                        +..++.=.|....--|-.=.++.+-  | .|.+-+.-.+..+---. ...-+..|+++-|-++-...     ...+.|
T Consensus       131 ~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m  210 (254)
T cd00762         131 INERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDV  210 (254)
T ss_pred             cCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHH
Confidence              8899998888766334333344443  3 23333322111111000 12346789999998875221     122455


Q ss_pred             HHHHHHHHHHHHcCC
Q 016620          333 ATLAALNVLGKIKGY  347 (386)
Q Consensus       333 ~~~~~~ni~~~~~g~  347 (386)
                      ...+++-|-.+..-+
T Consensus       211 ~~aAA~aLA~~v~~~  225 (254)
T cd00762         211 FLSAAEAIASSVTEE  225 (254)
T ss_pred             HHHHHHHHHhhCChh
Confidence            555666666655443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.98  E-value=0.0084  Score=60.24  Aligned_cols=74  Identities=26%  Similarity=0.310  Sum_probs=44.7

Q ss_pred             EEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhhCCEEEEcc
Q 016620          168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       168 vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      |+|+|.|.+|+.+++.|++.... +|++.||+...... ..+.    +......  ........+++++++++|+|+.|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~-~~~~----~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAER-LAEK----LLGDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHH-HHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHH-HHhh----ccccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            78999999999999998655556 89999998765221 1100    0000000  001111234778999999999999


Q ss_pred             CC
Q 016620          245 VL  246 (386)
Q Consensus       245 Pl  246 (386)
                      |.
T Consensus        76 gp   77 (386)
T PF03435_consen   76 GP   77 (386)
T ss_dssp             SG
T ss_pred             cc
Confidence            74

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.96  E-value=0.027  Score=63.23  Aligned_cols=75  Identities=21%  Similarity=0.275  Sum_probs=47.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-------------EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      ..++|+|||.|.||+..|+.|++.-+.+             |.+.|++.... ++..+.+      .+...... .+.+.
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~------~~~~~v~l-Dv~D~  639 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGI------ENAEAVQL-DVSDS  639 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhc------CCCceEEe-ecCCH
Confidence            4678999999999999999986544444             88899886542 1111111      01100111 12344


Q ss_pred             HH---HhhhCCEEEEccCC
Q 016620          231 DE---VLREADVISLHPVL  246 (386)
Q Consensus       231 ~e---ll~~aDiVvl~lPl  246 (386)
                      ++   +++.+|+|++|+|.
T Consensus       640 e~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        640 ESLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             HHHHHhhcCCCEEEECCCc
Confidence            44   44689999999996

>PRK11579 putative oxidoreductase; Provisional

Probab=95.96  E-value=0.051  Score=53.77  Aligned_cols=67  Identities=18%  Similarity=0.175  Sum_probs=44.4

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv  241 (386)
                      .+|||||+|.||+. .+..+.+.-++++. ++|++.......    +       .    ....+.+++++++  +.|+|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~----~-------~----~~~~~~~~~ell~~~~vD~V~   69 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKAD----W-------P----TVTVVSEPQHLFNDPNIDLIV   69 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHhh----C-------C----CCceeCCHHHHhcCCCCCEEE
Confidence            47999999999985 55655333478876 567765432110    0       0    1123579999996  579999


Q ss_pred             EccCCC
Q 016620          242 LHPVLD  247 (386)
Q Consensus       242 l~lPlt  247 (386)
                      +|+|..
T Consensus        70 I~tp~~   75 (346)
T PRK11579         70 IPTPND   75 (346)
T ss_pred             EcCCcH
Confidence            999963

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.95  E-value=0.048  Score=55.38  Aligned_cols=90  Identities=20%  Similarity=0.302  Sum_probs=62.7

Q ss_pred             ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH
Q 016620          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (386)
Q Consensus       162 ~l~g~~vgIvG~----------G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (386)
                      .+.|++|+|+|+          .+-...+++.| ...|++|.+|||........            .     .....+++
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~------------~-----~~~~~~~~  371 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK------------G-----LPLIDDLE  371 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh------------h-----cccCCCHH
Confidence            479999999998          56788899998 58899999999986442110            0     01246888


Q ss_pred             HHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       232 ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      +.++.||+|+++.+.. + ..-++-+.+..+-+..+++|.
T Consensus       372 ~~~~~ad~~v~~t~~~-~-~~~~~~~~~~~~~~~~~v~D~  409 (411)
T TIGR03026       372 EALKGADALVILTDHD-E-FKDLDLEKIKDLMKGKVVVDT  409 (411)
T ss_pred             HHHhCCCEEEEecCCH-H-HhccCHHHHHHhcCCCEEEeC
Confidence            9999999999999852 2 222454444443334577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.91  E-value=0.043  Score=45.00  Aligned_cols=89  Identities=20%  Similarity=0.289  Sum_probs=53.2

Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhhCCEEEEc
Q 016620          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVISLH  243 (386)
Q Consensus       168 vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiVvl~  243 (386)
                      |.|+|+|.+|+.+++.| +..+.+|++.|.++.....         ++..+ .........+.+.+    ++++|.|+++
T Consensus         1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~~~---------~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERVEE---------LREEG-VEVIYGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHHHH---------HHHTT-SEEEES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHHHH---------HHhcc-cccccccchhhhHHhhcCccccCEEEEc
Confidence            57999999999999998 5666699999988754221         12222 11111122333222    5889999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEE
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILV  269 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailI  269 (386)
                      .+...  .++.-...++.+-+...++
T Consensus        70 ~~~d~--~n~~~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   70 TDDDE--ENLLIALLARELNPDIRII   93 (116)
T ss_dssp             SSSHH--HHHHHHHHHHHHTTTSEEE
T ss_pred             cCCHH--HHHHHHHHHHHHCCCCeEE
Confidence            98643  3333344555555554444

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=95.89  E-value=0.76  Score=45.55  Aligned_cols=79  Identities=15%  Similarity=0.130  Sum_probs=51.3

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+.|.+|+++|-+  ++..+++..+ ..||+++.+..|..-...+.+.+...+..+..+   .......++++.++++|+
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDv  228 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADF  228 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4889999999976  6789999886 579999999987542211111110000011112   223345799999999999


Q ss_pred             EEEcc
Q 016620          240 ISLHP  244 (386)
Q Consensus       240 Vvl~l  244 (386)
                      |..-.
T Consensus       229 vytd~  233 (336)
T PRK03515        229 IYTDV  233 (336)
T ss_pred             EEecC
Confidence            98863

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.87  E-value=0.032  Score=56.96  Aligned_cols=79  Identities=13%  Similarity=0.132  Sum_probs=48.6

Q ss_pred             CeEEEEecChhHHHHHH--HHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          166 QTVGVIGAGRIGSAYAR--MMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~--~L~~--~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+|+|||.|++|...+-  .++.  ++ |.+|..||++...... ........... ...........++++.++.||+|
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~-~~~~~~~~~~~-~~~~~~I~~ttD~~eal~~AD~V   78 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLET-VEILAKKIVEE-LGAPLKIEATTDRREALDGADFV   78 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHH-HHHHHHHHHHh-cCCCeEEEEeCCHHHHhcCCCEE
Confidence            37999999999998554  2221  33 5699999998754221 11100011111 11223334457889999999999


Q ss_pred             EEccCC
Q 016620          241 SLHPVL  246 (386)
Q Consensus       241 vl~lPl  246 (386)
                      +++.|.
T Consensus        79 i~ai~~   84 (423)
T cd05297          79 INTIQV   84 (423)
T ss_pred             EEeeEe
Confidence            999983

linked to 3D####ucture

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=95.84  E-value=0.053  Score=57.62  Aligned_cols=70  Identities=20%  Similarity=0.317  Sum_probs=49.8

Q ss_pred             EEecCC-CCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc-cccCCCeEEEEecChhHHHHHHHHHhcC
Q 016620          111 AVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (386)
Q Consensus       111 ~v~n~~-~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g-~~l~g~~vgIvG~G~IG~~iA~~L~~~f  188 (386)
                      ++.+-. .......||.++-+=|-+.|                |.-....+ ..|++.+|.|+|.|.+|..+|+.|+ ++
T Consensus       298 r~~dL~~~mdP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La-~~  360 (664)
T TIGR01381       298 ISVDLSKEFDPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLI-GW  360 (664)
T ss_pred             eEechhhhcCHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHH-Hc
Confidence            444433 23566778888877777766                43222222 5689999999999999999999984 78


Q ss_pred             Cc-EEEEEcC
Q 016620          189 KM-NLIYYDL  197 (386)
Q Consensus       189 g~-~V~~~d~  197 (386)
                      |. ++..+|.
T Consensus       361 GVg~ItlVD~  370 (664)
T TIGR01381       361 GVRHITFVDN  370 (664)
T ss_pred             CCCeEEEEcC
Confidence            87 5777774

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=95.83  E-value=1.6  Score=43.26  Aligned_cols=79  Identities=11%  Similarity=0.087  Sum_probs=50.7

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+.|.+|+++|-+  ++..+.+..+ ..+|++|.+..|..-...+.+.+...+..+..+   ..+....++++.++.+|+
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv  228 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADF  228 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4789999999975  7888888876 579999999887542111111110000011111   123345789999999999


Q ss_pred             EEEcc
Q 016620          240 ISLHP  244 (386)
Q Consensus       240 Vvl~l  244 (386)
                      |..-.
T Consensus       229 vyt~~  233 (334)
T PRK12562        229 IYTDV  233 (334)
T ss_pred             EEEcC
Confidence            98764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.79  E-value=0.1  Score=53.42  Aligned_cols=119  Identities=23%  Similarity=0.296  Sum_probs=72.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .+.++++.|+|.|.+|.++|+.| ...|++|+++|+..........+.    +...+   .........++....+|+|+
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~---~~~~~~~~~~~~~~~~d~vv   73 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELG---IELVLGEYPEEFLEGVDLVV   73 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcC---CEEEeCCcchhHhhcCCEEE
Confidence            36789999999999999999998 589999999998753322221111    11112   11212222345667899999


Q ss_pred             EccCCChhhhhc----------ccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          242 LHPVLDKTTYHL----------INK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       242 l~lPlt~~t~~l----------i~~-~~~~~-mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      .+.-..+....+          +.. +.+.+ .+...+-|--+.|+.--..-|...|+.
T Consensus        74 ~~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         74 VSPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            876544332211          111 12222 233355566677887777777777765

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.76  E-value=0.25  Score=49.86  Aligned_cols=196  Identities=17%  Similarity=0.112  Sum_probs=117.6

Q ss_pred             hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (386)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~  186 (386)
                      +..|+|.|..-   +.+|=.+++-+|+.+|-                     .|+.|+..+|.+.|.|.-|-.+++.| .
T Consensus       165 ~~~IPvFhDDq---qGTaiv~lA~llnalk~---------------------~gk~l~d~kiv~~GAGAAgiaia~~l-~  219 (432)
T COG0281         165 RMNIPVFHDDQ---QGTAIVTLAALLNALKL---------------------TGKKLKDQKIVINGAGAAGIAIADLL-V  219 (432)
T ss_pred             cCCCCcccccc---cHHHHHHHHHHHHHHHH---------------------hCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence            44578877654   45577788888888872                     34679999999999999999999998 6


Q ss_pred             cCCc---EEEEEcCChhh---HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620          187 GFKM---NLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (386)
Q Consensus       187 ~fg~---~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~  260 (386)
                      +.|+   +|+.+|+..--   +.+.....+.......  ...   .... ++.+..+|+++-+--     .+.+.++.++
T Consensus       220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~--~~~---~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~  288 (432)
T COG0281         220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIE--DTG---ERTL-DLALAGADVLIGVSG-----VGAFTEEMVK  288 (432)
T ss_pred             HhCCCcccEEEEecCCcccCCCcccccchHHHHHHHh--hhc---cccc-cccccCCCEEEEcCC-----CCCcCHHHHH
Confidence            7888   69999976321   0000000000000000  000   0111 447889999887653     3899999999


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcH-----HHHHHHHHH
Q 016620          261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK-----WTREGMATL  335 (386)
Q Consensus       261 ~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~-----~~~~~~~~~  335 (386)
                      .|.+..++.=.|-...--....+....+    ++++=.+ .-|.  .|- +..|+++-|.+.-...     ..-+.|..-
T Consensus       289 ~Ma~~PiIfalaNP~pEi~Pe~a~~~~~----~aaivaT-Grsd--~Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~A  360 (432)
T COG0281         289 EMAKHPIIFALANPTPEITPEDAKEWGD----GAAIVAT-GRSD--YPN-QVNNVLIFPGIFRGALDVRAKTITDEMKIA  360 (432)
T ss_pred             HhccCCEEeecCCCCccCCHHHHhhcCC----CCEEEEe-CCCC--Ccc-cccceeEcchhhhhhHhhccccCCHHHHHH
Confidence            9999999988887663111222222221    2222111 1221  121 7789999999875322     223455555


Q ss_pred             HHHHHHHHHcC
Q 016620          336 AALNVLGKIKG  346 (386)
Q Consensus       336 ~~~ni~~~~~g  346 (386)
                      +++-|..+..-
T Consensus       361 Aa~AiA~~~~~  371 (432)
T COG0281         361 AAEAIADLARE  371 (432)
T ss_pred             HHHHHHhhccc
Confidence            66666666543

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.74  E-value=0.024  Score=57.74  Aligned_cols=109  Identities=20%  Similarity=0.251  Sum_probs=65.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .++|.|+|+|.+|.++|+.| +..|.+|.++|++.......  . +   ...      ..  ....+.+..++|+|+.+.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~--~-~---~~~------~~--~~~~~~~~~~~dlvV~s~   67 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC--P-Y---IHE------RY--LENAEEFPEQVDLVVRSP   67 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh--H-H---Hhh------hh--cCCcHHHhcCCCEEEECC
Confidence            36899999999999999998 68999999999865421100  0 0   000      00  112334457799998887


Q ss_pred             CCChhhh----------hcccHHHH--hc--C-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          245 VLDKTTY----------HLINKERL--AT--M-KKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       245 Plt~~t~----------~li~~~~~--~~--m-k~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +..+...          .++.+..+  ..  + +...+=|--+.|+.--..=|...|+.
T Consensus        68 gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~  126 (418)
T PRK00683         68 GIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR  126 (418)
T ss_pred             CCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence            6553211          12333222  21  2 22346666677887666667777765

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.71  E-value=0.014  Score=50.29  Aligned_cols=121  Identities=17%  Similarity=0.156  Sum_probs=67.7

Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCcccc-ccCCHHHHhhhCCEEEEccC
Q 016620          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RASSMDEVLREADVISLHPV  245 (386)
Q Consensus       168 vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~ell~~aDiVvl~lP  245 (386)
                      |+|+|.|.||.-+|-+|+ ..|.+|..+++.. . .+.. ...+-.+.... ....... ...+..+....+|+|++|+.
T Consensus         1 I~I~G~GaiG~~~a~~L~-~~g~~V~l~~r~~-~-~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLA-QAGHDVTLVSRSP-R-LEAI-KEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHH-HTTCEEEEEESHH-H-HHHH-HHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHHH-HCCCceEEEEccc-c-HHhh-hheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            689999999999999985 5899999999876 2 1111 10000011001 0000000 11122245788999999997


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaa  295 (386)
                      .. ++...+.. .-...++++.++-.--| +-.++.|.+.+...++.++.
T Consensus        77 a~-~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~  123 (151)
T PF02558_consen   77 AY-QLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGV  123 (151)
T ss_dssp             GG-GHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEE
T ss_pred             cc-chHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEE
Confidence            53 34444433 44555677677766555 44456666666444454443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK14030 glutamate dehydrogenase; Provisional

Probab=95.65  E-value=0.073  Score=54.49  Aligned_cols=121  Identities=13%  Similarity=0.101  Sum_probs=71.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE--------EcCChhhH-----HHHHHhhhhhhhhhc-CCCCccccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQATR-----LEKFVTAYGQFLKAN-GEQPVTWKR  226 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~--------~d~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~  226 (386)
                      .++.|+||.|-|+|++|+..|+.| ...|++|++        ||+..-..     +.++.+...+..... ...+ +...
T Consensus       224 ~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~-ga~~  301 (445)
T PRK14030        224 IDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP-GSTF  301 (445)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC-CCEE
Confidence            469999999999999999999998 689999999        77542211     111111000000000 0000 1111


Q ss_pred             cCCHHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       227 ~~~l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                       .+-++++ ..||+++-|.     +.+.|+++...++.  +-.+++-.+-| ++..+|- +.|.+..|
T Consensus       302 -i~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI  361 (445)
T PRK14030        302 -FAGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ  361 (445)
T ss_pred             -cCCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence             1223333 4688887665     57788888777773  23477888888 4555443 56666544

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=95.63  E-value=0.039  Score=53.92  Aligned_cols=74  Identities=20%  Similarity=0.245  Sum_probs=46.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcC-C-CCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANG-E-QPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ++|+|||.|.+|..+|..|+ ..|  .+|..+|++.........+.     .... . .+... ...+. +.+++||+|+
T Consensus         1 mkI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~dl-----~~~~~~~~~~~i-~~~d~-~~l~~aDiVi   72 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMDL-----AHGTPFVKPVRI-YAGDY-ADCKGADVVV   72 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHHH-----HccccccCCeEE-eeCCH-HHhCCCCEEE
Confidence            47999999999999999874 556  58999998764321111111     1000 0 01111 12344 5589999999


Q ss_pred             EccCCC
Q 016620          242 LHPVLD  247 (386)
Q Consensus       242 l~lPlt  247 (386)
                      ++.+..
T Consensus        73 ita~~~   78 (308)
T cd05292          73 ITAGAN   78 (308)
T ss_pred             EccCCC
Confidence            998863

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.63  E-value=0.06  Score=44.88  Aligned_cols=100  Identities=14%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             CeEEEEe----cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG----~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      |+|+|||    -|..|..+.+.| +..|.+|+..++.....                 .  +...+.+++|.-...|+++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-----------------~--G~~~y~sl~e~p~~iDlav   60 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-----------------L--GIKCYPSLAEIPEPIDLAV   60 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-----------------T--TEE-BSSGGGCSST-SEEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-----------------C--cEEeeccccCCCCCCCEEE
Confidence            5799999    789999999998 57999999999865431                 1  1224578887448899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      +++|. +.+..++ ++. ..+..+.+++..+    ..++++.+.+++..+.
T Consensus        61 v~~~~-~~~~~~v-~~~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   61 VCVPP-DKVPEIV-DEA-AALGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             E-S-H-HHHHHHH-HHH-HHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             EEcCH-HHHHHHH-HHH-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            99994 2333443 222 2345677888877    5677788888776554

>PLN02342 ornithine carbamoyltransferase

Probab=95.61  E-value=2.4  Score=42.26  Aligned_cols=76  Identities=17%  Similarity=0.151  Sum_probs=49.1

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|.+|+++|= .++..+++..+ ..||++|.+..|..-...+...+.    .+..+.  ..+....++++.++.||+|
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVv  263 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVV  263 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence            378999999987 35677777765 579999999987542211111110    111111  1233457899999999999


Q ss_pred             EEcc
Q 016620          241 SLHP  244 (386)
Q Consensus       241 vl~l  244 (386)
                      ..-.
T Consensus       264 y~~~  267 (348)
T PLN02342        264 YTDV  267 (348)
T ss_pred             EECC
Confidence            8764

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=95.59  E-value=0.031  Score=48.03  Aligned_cols=86  Identities=22%  Similarity=0.267  Sum_probs=50.0

Q ss_pred             EEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCC
Q 016620          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (386)
Q Consensus       168 vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt  247 (386)
                      +-|+|.|.+|+++++.+ +.+|++|.++|+++..                                +..++-+. +.+. 
T Consensus         1 L~I~GaG~va~al~~la-~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~-   45 (136)
T PF13478_consen    1 LVIFGAGHVARALARLA-ALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP-   45 (136)
T ss_dssp             EEEES-STCHHHHHHHH-HHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred             CEEEeCcHHHHHHHHHH-HhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence            46899999999999985 7999999999986421                                11333322 2221 


Q ss_pred             hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016620          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (386)
Q Consensus       248 ~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaal  296 (386)
                      ++..     +.+ .+.+++.+| ++++.-.|.+.|..+|++. ....++
T Consensus        46 ~~~~-----~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~~-~~YiG~   86 (136)
T PF13478_consen   46 DDIL-----EDL-EIDPNTAVV-MTHDHELDAEALEAALASP-ARYIGL   86 (136)
T ss_dssp             HHHH-----HHC--S-TT-EEE---S-CCCHHHHHHHHTTSS--SEEEE
T ss_pred             HHHH-----hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcCC-CCEEEe
Confidence            1110     111 356666666 8888889999998888863 444443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.55  E-value=0.042  Score=51.25  Aligned_cols=78  Identities=19%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiVvl~l  244 (386)
                      +++.|+|+|..|.++|+.| ...|.+|...|++.....+...+.+    ........ .....-|+++ +.++|+++.++
T Consensus         1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~----~~~~v~gd-~t~~~~L~~agi~~aD~vva~t   74 (225)
T COG0569           1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADEL----DTHVVIGD-ATDEDVLEEAGIDDADAVVAAT   74 (225)
T ss_pred             CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhc----ceEEEEec-CCCHHHHHhcCCCcCCEEEEee
Confidence            5799999999999999998 6899999999988765322110000    00000000 0011234555 78899999999


Q ss_pred             CCChh
Q 016620          245 VLDKT  249 (386)
Q Consensus       245 Plt~~  249 (386)
                      ..+..
T Consensus        75 ~~d~~   79 (225)
T COG0569          75 GNDEV   79 (225)
T ss_pred             CCCHH
Confidence            86543

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=95.50  E-value=0.027  Score=55.69  Aligned_cols=65  Identities=22%  Similarity=0.342  Sum_probs=45.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHhhhCCEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLREADVIS  241 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~aDiVv  241 (386)
                      +++|||||-|-.|+.++.. ++.+|.+|++.|+..........            .......+   ..+.++++.||+|.
T Consensus         1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~va------------~~~i~~~~dD~~al~ela~~~DViT   67 (375)
T COG0026           1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQVA------------DRVIVAAYDDPEALRELAAKCDVIT   67 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhcc------------cceeecCCCCHHHHHHHHhhCCEEE
Confidence            4799999999999999998 57999999999988764222110            00001111   25778899999995


Q ss_pred             E
Q 016620          242 L  242 (386)
Q Consensus       242 l  242 (386)
                      -
T Consensus        68 ~   68 (375)
T COG0026          68 Y   68 (375)
T ss_pred             E
Confidence            3

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.47  E-value=0.05  Score=50.69  Aligned_cols=95  Identities=12%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhhCC
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREAD  238 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aD  238 (386)
                      .-.+.|++|.|||-|.++..=++.| ..+|++|.++.+...+.......        .+.  ..+.. ..+. +-+..++
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~--i~~~~r~~~~-~dl~g~~   87 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGN--LKLIKGNYDK-EFIKDKH   87 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCCh-HHhCCCc
Confidence            3467899999999999999977777 47999999999887655433211        111  11111 1122 3457899


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      +|+.|+....     +|......++..-+++|+
T Consensus        88 LViaATdD~~-----vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         88 LIVIATDDEK-----LNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             EEEECCCCHH-----HHHHHHHHHHHcCCeEEE
Confidence            9999986322     344444445443455554

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.47  E-value=0.058  Score=52.89  Aligned_cols=103  Identities=17%  Similarity=0.250  Sum_probs=59.4

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|+|||.|.+|..+|-.|+ ++..-++..+|.+.........+.-    ....... .......+.++ +++||+|+++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~----~~~~~~~~~~v~~~~dy~~-~~~adivvit   78 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQ----HGSAFLKNPKIEADKDYSV-TANSKVVIVT   78 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHH----HhhccCCCCEEEECCCHHH-hCCCCEEEEC
Confidence            48999999999999998764 2455589999987643222222211    1111111 12222245665 7999999996


Q ss_pred             cCC--Ch-hhh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016620          244 PVL--DK-TTY-HLI--NK-------ERLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPl--t~-~t~-~li--~~-------~~~~~mk~gailIN~aR  273 (386)
                      .-.  .+ .|+ .++  |.       +.+....+.+++++++-
T Consensus        79 aG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  121 (312)
T cd05293          79 AGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN  121 (312)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence            432  21 233 111  11       23334467889999873

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.44  E-value=0.035  Score=57.71  Aligned_cols=113  Identities=19%  Similarity=0.190  Sum_probs=69.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ..|++|.|+|+|.+|.+.++.| +..|++|+++|..... .+.        ++..+.   .........+.+..+|+|+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~--------l~~~g~---~~~~~~~~~~~l~~~D~VV~   76 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRP--------HAERGV---ATVSTSDAVQQIADYALVVT   76 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHH--------HHhCCC---EEEcCcchHhHhhcCCEEEE
Confidence            5789999999999999999987 6899999999965432 111        111121   11111223455678999988


Q ss_pred             ccCCChhhh----------hcccHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          243 HPVLDKTTY----------HLINKERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       243 ~lPlt~~t~----------~li~~~~~~-~m--------k~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +....+...          .++++-.+. +.        +...+-|--+-|+.--..-|...|+.
T Consensus        77 SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         77 SPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            864433221          233332221 11        11345566677887766767777765

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.43  E-value=0.046  Score=56.45  Aligned_cols=77  Identities=14%  Similarity=0.139  Sum_probs=52.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+++|++|.|||-|.++..=++.| ..+|++|.++.+...+......        ..+.  ..+..-.-.++.+..+++|
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~--------~~~~--i~~~~~~~~~~dl~~~~lv   76 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWA--------DAGM--LTLVEGPFDESLLDTCWLA   76 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHH--------hCCC--EEEEeCCCChHHhCCCEEE
Confidence            479999999999999999977777 4799999999987655443221        1111  1121111123557889999


Q ss_pred             EEccCCCh
Q 016620          241 SLHPVLDK  248 (386)
Q Consensus       241 vl~lPlt~  248 (386)
                      +.|+....
T Consensus        77 ~~at~d~~   84 (457)
T PRK10637         77 IAATDDDA   84 (457)
T ss_pred             EECCCCHH
Confidence            88887543

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=95.40  E-value=0.068  Score=53.85  Aligned_cols=108  Identities=14%  Similarity=0.190  Sum_probs=61.9

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH-HHhhhCCEE
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLREADVI  240 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell~~aDiV  240 (386)
                      ..-++|+|+|. |.+|+.+.+.|..-=+.++..+.++...- ......+. .+.. +  .  .....+++ +.++++|+|
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~~-~l~~-~--~--~~~~~~~~~~~~~~~DvV  108 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVFP-HLIT-Q--D--LPNLVAVKDADFSDVDAV  108 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhCc-cccC-c--c--ccceecCCHHHhcCCCEE
Confidence            35568999998 99999999998433367888776543220 00000000 0000 0  0  01111222 225889999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV  283 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~  283 (386)
                      ++++|.. .     ..+....|+.|..+|+.|..-..+.++.+
T Consensus       109 f~Alp~~-~-----s~~i~~~~~~g~~VIDlSs~fRl~~~~~y  145 (381)
T PLN02968        109 FCCLPHG-T-----TQEIIKALPKDLKIVDLSADFRLRDIAEY  145 (381)
T ss_pred             EEcCCHH-H-----HHHHHHHHhCCCEEEEcCchhccCCcccc
Confidence            9999952 2     34444446678999999865555544433

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.36  E-value=0.14  Score=52.44  Aligned_cols=123  Identities=19%  Similarity=0.171  Sum_probs=68.5

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCCh---------hhHHHHHHh---hhhhhhhhcCCCCccccc
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVT---AYGQFLKANGEQPVTWKR  226 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~  226 (386)
                      +.++.|+||.|-|+|++|+..|+.| ..+|++|+ +.|.+.         ...+....+   .....+........+...
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~  310 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY  310 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence            3579999999999999999999998 58999999 444440         111110000   000000000000001111


Q ss_pred             cCCHHHHh-hhCCEEEEccCCChhhhhcccHHHHhcC-CCCc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEA-ILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       227 ~~~l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~m-k~ga-ilIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      . +-++++ ..||+.+-|.     +.+.|+.+....+ +.++ +++-.+-+++-. +| .+.|++..|
T Consensus       311 ~-~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~-eA-~~~L~~~GI  370 (454)
T PTZ00079        311 V-PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPTTI-EA-THLFKKNGV  370 (454)
T ss_pred             e-CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCCCH-HH-HHHHHHCCc
Confidence            1 122222 4689888765     5777888877755 4444 566667777644 33 356665544

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.34  E-value=0.077  Score=50.79  Aligned_cols=74  Identities=18%  Similarity=0.211  Sum_probs=44.5

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|+|+| +|.||+.+++.+...-++++.+ +|+..........      ....+..+.+.....+++++...+|+|+.+
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~------~~~~~~~~~gv~~~~d~~~l~~~~DvVIdf   75 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDA------GELAGIGKVGVPVTDDLEAVETDPDVLIDF   75 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCH------HHhcCcCcCCceeeCCHHHhcCCCCEEEEC
Confidence            3799999 6999999999875456788664 6643221100000      000111111223346888886679999999


Q ss_pred             cC
Q 016620          244 PV  245 (386)
Q Consensus       244 lP  245 (386)
                      .|
T Consensus        76 T~   77 (266)
T TIGR00036        76 TT   77 (266)
T ss_pred             CC
Confidence            86

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=95.22  E-value=0.075  Score=52.84  Aligned_cols=101  Identities=15%  Similarity=0.238  Sum_probs=56.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|+|+|. |.+|+.+++.|. .. +.++. .++++.... ....+.++ .+.  +.....+ ...+.++++.++|+|++
T Consensus         1 ~kVaIiGATG~vG~ellr~L~-~hP~~el~~l~~s~~sag-k~~~~~~~-~l~--~~~~~~~-~~~~~~~~~~~~DvVf~   74 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLL-NHPEVEITYLVSSRESAG-KPVSEVHP-HLR--GLVDLNL-EPIDEEEIAEDADVVFL   74 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHH-cCCCceEEEEeccchhcC-CChHHhCc-ccc--ccCCcee-ecCCHHHhhcCCCEEEE
Confidence            47999998 999999999984 55 67777 345443110 00000010 000  0001111 11255666668999999


Q ss_pred             ccCCChhhhhcccHHHHhcC-CCCcEEEEcCCCcccC
Q 016620          243 HPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVID  278 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~m-k~gailIN~aRg~~vd  278 (386)
                      |+|.. ..     .+....+ +.|..+|+.|-.-=.+
T Consensus        75 alP~~-~s-----~~~~~~~~~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        75 ALPHG-VS-----AELAPELLAAGVKVIDLSADFRLK  105 (346)
T ss_pred             CCCch-HH-----HHHHHHHHhCCCEEEeCChhhhcC
Confidence            99953 22     2222222 5688899987533333

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=95.21  E-value=0.047  Score=50.90  Aligned_cols=107  Identities=23%  Similarity=0.193  Sum_probs=62.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCC-CCccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGE-QPVTW  224 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~-~~~~~  224 (386)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+.  + .++           .+...+.+++... .....
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~   95 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEA   95 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEE
Confidence            4689999999999999999999985 5677 677887543210  0 000           0000011111110 00000


Q ss_pred             c----ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       225 ~----~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      .    ...+++++++++|+|+.|+. +.+++.++++...+   .+.-+|.++
T Consensus        96 ~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          96 YNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             ecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence            0    01245678889999999986 56777777765554   345566654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.21  E-value=0.13  Score=49.63  Aligned_cols=116  Identities=18%  Similarity=0.208  Sum_probs=68.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ...|+++.|+|.|..+++++..| +..|+ +|++++|+.... ++..+.+    .+.+. ........+++. ..++|+|
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~ra-~~La~~~----~~~~~-~~~~~~~~~~~~-~~~~dli  194 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRERA-EELADLF----GELGA-AVEAAALADLEG-LEEADLL  194 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHh----hhccc-cccccccccccc-ccccCEE
Confidence            56899999999999999999988 46785 799999987642 2211111    11110 000111122222 1269999


Q ss_pred             EEccCCChhhh--h-cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          241 SLHPVLDKTTY--H-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       241 vl~lPlt~~t~--~-li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      +.++|..-.-.  . +++   ...++++.++.++--.+. ++.=|..|=+.|
T Consensus       195 INaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G  242 (283)
T COG0169         195 INATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQG  242 (283)
T ss_pred             EECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcC
Confidence            99999744322  1 233   455677778877765543 333333333334

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.21  E-value=0.23  Score=49.82  Aligned_cols=122  Identities=16%  Similarity=0.205  Sum_probs=80.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH-------HHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK-------FVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      ++|.|+|.|=+|...+-+|+ .+|.+|+.+|....+-..-       |.....+.+++....+ +.....+.++.++++|
T Consensus         1 MkI~viGtGYVGLv~g~~lA-~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~g-Rl~fTtd~~~a~~~ad   78 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLA-ELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASG-RLRFTTDYEEAVKDAD   78 (414)
T ss_pred             CceEEECCchHHHHHHHHHH-HcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccC-cEEEEcCHHHHHhcCC
Confidence            57999999999999999985 8999999999876542110       0001112222222111 1233468888999999


Q ss_pred             EEEEccCCChhhhhccc--------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          239 VISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~--------~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ++++|+|..+.-.+-+|        ++....++..+++|+=|.-.+=-.+.+.+-+...
T Consensus        79 v~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~  137 (414)
T COG1004          79 VVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREE  137 (414)
T ss_pred             EEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhh
Confidence            99999986554333222        3456667777999999997765556666555543

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.19  E-value=0.33  Score=48.78  Aligned_cols=105  Identities=25%  Similarity=0.200  Sum_probs=60.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-H-----------HHHhhhhhhhhhcCCCCcccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-E-----------KFVTAYGQFLKANGEQPVTWK  225 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~-----------~~~~~~~~~~~~~~~~~~~~~  225 (386)
                      ..+.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..-..  + +           ...+...+.+++... .....
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np-~v~v~  208 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNP-DVQVE  208 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCC-CCEEE
Confidence            4689999999999999999999985 6677 688888762100  0 0           000000011111110 01111


Q ss_pred             c------cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          226 R------ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       226 ~------~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      .      ..+++++++++|+|+.|+- +.+++.++++...+   .+.-+|..
T Consensus       209 ~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~---~~ip~i~~  256 (376)
T PRK08762        209 AVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK---LGKPLVYG  256 (376)
T ss_pred             EEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEE
Confidence            0      1235667889999988885 45667777665443   33444544

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.17  E-value=0.11  Score=50.67  Aligned_cols=125  Identities=14%  Similarity=0.115  Sum_probs=70.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|+|+|.|.||.-+|-.|+ ..|.+|..++|... ..+.....-+=.+...+.. ..+.....-.+.....|+|++|+-
T Consensus         3 m~I~IiGaGaiG~~~a~~L~-~~G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK   79 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLA-RAGLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK   79 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHH-hCCCCeEEEEechH-HHHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence            47999999999999999984 66899999998642 2221111000000001110 000000111122467899999996


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaal  296 (386)
                      .. ++...+ +.....+.+++.++-.--| +-.++.+.+.+.+.++.++..
T Consensus        80 ~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~  127 (305)
T PRK05708         80 AY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS  127 (305)
T ss_pred             HH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence            43 233332 3455566788877666443 345666777776555555443

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.16  E-value=0.19  Score=51.35  Aligned_cols=118  Identities=21%  Similarity=0.200  Sum_probs=69.4

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh-CCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiVv  241 (386)
                      +.|+++.|+|.|.+|.++|+.| ...|++|+++|+......+. .+    .+...+.   .........+++.. .|+|+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~----~l~~~g~---~~~~~~~~~~~~~~~~d~vV   73 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQ----ELLEEGI---KVICGSHPLELLDEDFDLMV   73 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HH----HHHhcCC---EEEeCCCCHHHhcCcCCEEE
Confidence            6789999999999999999998 58999999999764321110 00    0111121   11111122344444 89988


Q ss_pred             EccCCChhh----------hhcccHHHH-hcC-CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          242 LHPVLDKTT----------YHLINKERL-ATM-KKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       242 l~lPlt~~t----------~~li~~~~~-~~m-k~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ...-..++.          ..++.+..+ ..+ +...+-|--+.|+.--..-|...|+..
T Consensus        74 ~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~  133 (447)
T PRK02472         74 KNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAG  133 (447)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHC
Confidence            876222211          123333322 233 344566777889887777777777653

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.13  E-value=0.11  Score=51.91  Aligned_cols=89  Identities=24%  Similarity=0.347  Sum_probs=61.5

Q ss_pred             cCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 016620          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (386)
Q Consensus       163 l~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (386)
                      |.|++|||+|+-          +-...++++| +..|++|.+|||........             ..+ ......++++
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~-------------~~~-~~~~~~~~~~  372 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR-------------NFP-DVELESDAEE  372 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh-------------cCC-CceEeCCHHH
Confidence            899999999984          4567888998 78999999999976542211             011 2234679999


Q ss_pred             HhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (386)
Q Consensus       233 ll~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN  270 (386)
                      +++.||+++++..- ++-+.+ +-+.+ .|| +.++++
T Consensus       373 ~~~~aDaivi~tew-~ef~~~-d~~~~-~m~-~~~v~D  406 (414)
T COG1004         373 ALKGADAIVINTEW-DEFRDL-DFEKL-LMK-TPVVID  406 (414)
T ss_pred             HHhhCCEEEEeccH-HHHhcc-Chhhh-hcc-CCEEEe
Confidence            99999999999862 343433 33333 566 445554

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.01  E-value=0.12  Score=53.58  Aligned_cols=115  Identities=16%  Similarity=0.134  Sum_probs=70.7

Q ss_pred             ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhh-hhh---hc------CCCC
Q 016620          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ-FLK---AN------GEQP  221 (386)
Q Consensus       162 ~l~g~~vgIvG~----------G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~-~~~---~~------~~~~  221 (386)
                      .+.|++|+|+|+          .+-...+++.| ...|.+|.+|||........  ..+.. .+.   ..      ...+
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  397 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQIQ--RDLSMNKFDWDHPRHLQPMSPTAV  397 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHHH--HHhhcccccccccccccccccccc
Confidence            589999999998          56788999998 57899999999985432110  00000 000   00      0000


Q ss_pred             ccccccCCHHHHhhhCCEEEEccCCChhhhhcccHH-HHhcCCCCcEEEEcCCCcccCHHHHH
Q 016620          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV  283 (386)
Q Consensus       222 ~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~-~~~~mk~gailIN~aRg~~vde~aL~  283 (386)
                      .......++++.++.||+|+++.+. ++-+. ++-+ ....|++..+++|. |+ ++|.+.+.
T Consensus       398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        398 KQVSVVWDAYEATKGAHGICILTEW-DEFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             cceeeeCCHHHHhcCCCEEEECCCC-hHhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            0112345677899999999999985 33333 3433 35668766688885 53 45655553

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=94.91  E-value=0.36  Score=46.69  Aligned_cols=79  Identities=23%  Similarity=0.291  Sum_probs=49.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCccccccCCHHHHhhhCCE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+.|+++.|+|.|..|++++-.|+ ..|+ +|++++|+..+. ++..+.    +... +..........++++.+..+|+
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~-~~g~~~i~i~nR~~~ka-~~La~~----~~~~~~~~~~~~~~~~~~~~~~~~~di  197 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALV-THGVQKLQVADLDTSRA-QALADV----INNAVGREAVVGVDARGIEDVIAAADG  197 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHH----HhhccCcceEEecCHhHHHHHHhhcCE
Confidence            356889999999999999999874 5787 799999986542 221111    1100 0000000011123445678999


Q ss_pred             EEEccCC
Q 016620          240 ISLHPVL  246 (386)
Q Consensus       240 Vvl~lPl  246 (386)
                      |+.++|.
T Consensus       198 vINaTp~  204 (283)
T PRK14027        198 VVNATPM  204 (283)
T ss_pred             EEEcCCC
Confidence            9999995

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.90  E-value=0.1  Score=48.25  Aligned_cols=37  Identities=35%  Similarity=0.452  Sum_probs=31.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~  198 (386)
                      ..|.+++|+|+|+|.+|..+|+.|+ ..|. ++..+|..
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D   61 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFD   61 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCC
Confidence            4589999999999999999999985 4566 58888876

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=94.89  E-value=0.25  Score=48.02  Aligned_cols=107  Identities=18%  Similarity=0.140  Sum_probs=68.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .|++++|||--.=-..++++| ...|++|+++.-....        |         ...+.....+.+++++++|+|+.-
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~--------~---------~~~g~~~~~~~~~~~~~ad~ii~~   62 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLD--------H---------GFTGATKSSSLEEALSDVDVIILP   62 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeccccc--------c---------ccCCceeeccHHHHhccCCEEEEC
Confidence            378999999888888899998 5789988865321110        0         011222334678889999999999


Q ss_pred             cCCChhhh----------hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 016620          244 PVLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (386)
Q Consensus       244 lPlt~~t~----------~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g  293 (386)
                      +|.+.+..          --++.+.+++|++|..++ ++.+..   . +-+.+++.++..
T Consensus        63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~~---~-~~~~~~~~gi~~  117 (296)
T PRK08306         63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIANP---Y-LKELAKETNRKL  117 (296)
T ss_pred             CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCCH---H-HHHHHHHCCCeE
Confidence            88754331          113578999999998444 344332   1 334455555554

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=94.89  E-value=0.96  Score=45.20  Aligned_cols=79  Identities=20%  Similarity=0.251  Sum_probs=48.4

Q ss_pred             ccCCCeEEEEecCh--------hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 016620          162 LLKGQTVGVIGAGR--------IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (386)
Q Consensus       162 ~l~g~~vgIvG~G~--------IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (386)
                      .+.|++|+|+|.|.        +.++++..+ ..||++|.+..|..-...+...+.-.+..+..+   .......+++|.
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~~ea  242 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENG---GKFNIVNSMDEA  242 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            37899999998643        446777776 579999999987632111111110000011112   223345799999


Q ss_pred             hhhCCEEEEcc
Q 016620          234 LREADVISLHP  244 (386)
Q Consensus       234 l~~aDiVvl~l  244 (386)
                      ++++|+|..-.
T Consensus       243 ~~~aDvvyt~~  253 (357)
T TIGR03316       243 FKDADIVYPKS  253 (357)
T ss_pred             hCCCCEEEECC
Confidence            99999998764

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=94.87  E-value=0.07  Score=51.82  Aligned_cols=101  Identities=19%  Similarity=0.277  Sum_probs=58.1

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-------------HhhhhhhhhhcCCCCcccc----
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-------------VTAYGQFLKANGEQPVTWK----  225 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-------------~~~~~~~~~~~~~~~~~~~----  225 (386)
                      +|.|+|.|.+|..+|+.|+ .+|. ++..+|...-..  + +++             .+...+.+++.. ......    
T Consensus         1 kVLIvGaGGLGs~vA~~La-~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iN-P~v~v~~~~~   78 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLL-GWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIF-PSIDATGIVL   78 (307)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHC-CCcEEEEeee
Confidence            5899999999999999985 6777 577777432110  0 000             000001111110 000010    


Q ss_pred             -------------------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          226 -------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       226 -------------------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                                         ....++++++++|+|+.++ .+.+++.+++.-....   +..+|+.+-
T Consensus        79 ~Ipmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aal  141 (307)
T cd01486          79 SIPMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAAL  141 (307)
T ss_pred             eccccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEEe
Confidence                               1123678999999999999 4678888877655443   336666543

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.86  E-value=0.14  Score=52.33  Aligned_cols=74  Identities=19%  Similarity=0.237  Sum_probs=48.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCc-c-ccccCCHHHH-hhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-T-WKRASSMDEV-LREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~l~el-l~~aDiVv  241 (386)
                      ++|.|+|+|.+|+.+|+.| ...|.+|+++|++......         ++. .+..-. + ......++++ +.++|.|+
T Consensus         1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~~~---------~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi   70 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERLRR---------LQDRLDVRTVVGNGSSPDVLREAGAEDADLLI   70 (453)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHHHH---------HHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEE
Confidence            4799999999999999998 5789999999987654211         111 110000 0 0112345555 78899999


Q ss_pred             EccCCChh
Q 016620          242 LHPVLDKT  249 (386)
Q Consensus       242 l~lPlt~~  249 (386)
                      ++++....
T Consensus        71 ~~~~~~~~   78 (453)
T PRK09496         71 AVTDSDET   78 (453)
T ss_pred             EecCChHH
Confidence            99986443

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.76  E-value=0.081  Score=52.47  Aligned_cols=98  Identities=21%  Similarity=0.225  Sum_probs=59.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH-------------HH---HHHhhhhhhhhhcC-CCCc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR-------------LE---KFVTAYGQFLKANG-EQPV  222 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~-------------~~---~~~~~~~~~~~~~~-~~~~  222 (386)
                      ..|..++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+.             ..   ...+...+.+++.. ....
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v   98 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRV   98 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEE
Confidence            4689999999999999999999985 5677 899998753110             00   00000001111111 0000


Q ss_pred             ccc----ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620          223 TWK----RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (386)
Q Consensus       223 ~~~----~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~  260 (386)
                      ...    ...++.++++++|+|+.|+- +.+++.++++...+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~  139 (339)
T PRK07688         99 EAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK  139 (339)
T ss_pred             EEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            000    11245678899999998875 56778888776554

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.75  E-value=0.11  Score=54.74  Aligned_cols=40  Identities=25%  Similarity=0.221  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ..+.++++.|+|.|.+|++++..| ...|++|++++|+...
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~  414 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER  414 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH
Confidence            357889999999999999999998 4788999999987543

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=94.75  E-value=0.16  Score=50.00  Aligned_cols=96  Identities=16%  Similarity=0.202  Sum_probs=59.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---hCC
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EAD  238 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aD  238 (386)
                      ..|++|.|.|.|.+|...++.+ +..|+ +|++.+++.... + .       .++.+..........++++...   ..|
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqla-k~~G~~~Vi~~~~~~~~~-~-~-------a~~lGa~~vi~~~~~~~~~~~~~~g~~D  237 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAV-KTLGAAEIVCADVSPRSL-S-L-------AREMGADKLVNPQNDDLDHYKAEKGYFD  237 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEEeCCHHHH-H-H-------HHHcCCcEEecCCcccHHHHhccCCCCC
Confidence            3689999999999999999975 78998 688888765432 1 1       1222221111111123344332   268


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|+-+... +.+    -...++.++++..++.++.
T Consensus       238 ~vid~~G~-~~~----~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        238 VSFEVSGH-PSS----INTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             EEEECCCC-HHH----HHHHHHHhhcCCEEEEEcc
Confidence            88877753 111    1456677888888888865

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=94.74  E-value=0.74  Score=47.05  Aligned_cols=125  Identities=15%  Similarity=0.193  Sum_probs=73.7

Q ss_pred             cEEEEccccccccChhHHhhCCcEEecCC-CCC---chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCccccccc
Q 016620           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTP-GVL---TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL  163 (386)
Q Consensus        88 k~i~~~~~G~d~id~~~~~~~gI~v~n~~-~~~---~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l  163 (386)
                      .+|+.+.-+-..+ .+.++..+|+|.|.- |..   +++.|+.     +.+.+++         |.         .|..+
T Consensus       184 D~IviR~~~~~~~-~e~A~~s~vPVINAgdg~~~HPtQaLaDl-----~Ti~E~~---------g~---------~g~~l  239 (429)
T PRK11891        184 DALVIRHPEQGSV-AEFARATNLPVINGGDGPGEHPSQALLDL-----YTIQREF---------SR---------LGKIV  239 (429)
T ss_pred             CEEEEeCCchhHH-HHHHHhCCCCEEECCCCCCCCcHHHHHHH-----HHHHHHh---------Cc---------cCCCc
Confidence            5666664333333 233456689999976 333   3444442     2222211         10         12348


Q ss_pred             CCCeEEEEecC---hhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          164 KGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~G---~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .|++|+++|-+   ++..+.+..+ ..+ |++|.+..|..-...+.+.+.    ++..   +..+....+++|.+++||+
T Consensus       240 ~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~eav~~ADV  311 (429)
T PRK11891        240 DGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRN---GHVIEQTDDLAAGLRGADV  311 (429)
T ss_pred             CCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhc---CCeEEEEcCHHHHhCCCCE
Confidence            99999999984   8889988876 355 999999887542111111111    1111   2223345799999999999


Q ss_pred             EEEcc
Q 016620          240 ISLHP  244 (386)
Q Consensus       240 Vvl~l  244 (386)
                      |....
T Consensus       312 VYt~~  316 (429)
T PRK11891        312 VYATR  316 (429)
T ss_pred             EEEcC
Confidence            98844

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=94.74  E-value=0.19  Score=51.26  Aligned_cols=97  Identities=12%  Similarity=0.115  Sum_probs=58.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCccccccCCHHH----HhhhC
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDE----VLREA  237 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~e----ll~~a  237 (386)
                      +..+++.|+|+|.+|+.+++.| ...|.+|+++|.++.... ..        +... ..........+.+.    -+.++
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~~-~~--------~~~~~~~~~i~gd~~~~~~L~~~~~~~a  298 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERAE-EL--------AEELPNTLVLHGDGTDQELLEEEGIDEA  298 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHH-HH--------HHHCCCCeEEECCCCCHHHHHhcCCccC
Confidence            4568899999999999999998 678999999998765321 11        1110 00000111122222    25789


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      |.|+++++.+.  .+++.....+.+....+++-+
T Consensus       299 ~~vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        299 DAFIALTNDDE--ANILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             CEEEECCCCcH--HHHHHHHHHHHhCCCeEEEEE
Confidence            99999888643  333334444445555455443

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=94.72  E-value=1  Score=44.06  Aligned_cols=66  Identities=14%  Similarity=0.129  Sum_probs=48.2

Q ss_pred             cCCCeEEEEec---ChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       163 l~g~~vgIvG~---G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      +.|.+|+++|=   +++..+.+..+ ..||+ +|.+..|..-.  +.            ......+....++++.++.+|
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~aD  219 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNSD  219 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCCC
Confidence            78999999998   59999999987 58999 99998874311  10            000012334578999999999


Q ss_pred             EEEEc
Q 016620          239 VISLH  243 (386)
Q Consensus       239 iVvl~  243 (386)
                      +|...
T Consensus       220 vvy~~  224 (310)
T PRK13814        220 VIVTL  224 (310)
T ss_pred             EEEEC
Confidence            99873

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=94.69  E-value=0.24  Score=48.30  Aligned_cols=74  Identities=22%  Similarity=0.344  Sum_probs=51.3

Q ss_pred             ccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       162 ~l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      .+.|.+|+++|-|   ++..+.+..+ ..||++|.+..|..-...+.+.+.    .+..   +..+....++++.++.||
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~~a~~~aD  218 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKAK---GIKVRETESLEEVIDEAD  218 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHHc---CCEEEEECCHHHHhCCCC
Confidence            3789999999995   9999999987 589999999987543111111111    1111   122334579999999999


Q ss_pred             EEEEc
Q 016620          239 VISLH  243 (386)
Q Consensus       239 iVvl~  243 (386)
                      +|..-
T Consensus       219 vvyt~  223 (301)
T TIGR00670       219 VLYVT  223 (301)
T ss_pred             EEEEC
Confidence            99774

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.69  E-value=0.39  Score=44.43  Aligned_cols=98  Identities=19%  Similarity=0.146  Sum_probs=59.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-----hhhC
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-----LREA  237 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-----l~~a  237 (386)
                      ..|.+|.|+|.|.+|+.+++.+ +..|.+|++.+++.....  +..       ..+..........+..+.     -...
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~~--~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~  202 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKLE--LAK-------ELGADHVIDYKEEDLEEELRLTGGGGA  202 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHHH--HHH-------HhCCceeccCCcCCHHHHHHHhcCCCC
Confidence            4678999999999999999985 789999999988754321  111       111111000001112111     2457


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |+++.+.+...     .-...+..|+++..+++++...
T Consensus       203 d~vi~~~~~~~-----~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         203 DVVIDAVGGPE-----TLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             CEEEECCCCHH-----HHHHHHHhcccCCEEEEEccCC
Confidence            88888776421     1244567788888888877654

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06270 homoserine dehydrogenase; Provisional

Probab=94.68  E-value=0.14  Score=50.85  Aligned_cols=118  Identities=21%  Similarity=0.263  Sum_probs=64.0

Q ss_pred             eEEEEecChhHHHHHHHHHh---------cCCcEEEE-EcCChh---------hHHHHHHhhhhhhhhhcCCCCc--ccc
Q 016620          167 TVGVIGAGRIGSAYARMMVE---------GFKMNLIY-YDLYQA---------TRLEKFVTAYGQFLKANGEQPV--TWK  225 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~---------~fg~~V~~-~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~--~~~  225 (386)
                      +|||+|+|.||+.+++.|.+         +.+.+|.+ +|++..         .+...+.       ...+....  ...
T Consensus         4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~-------~~~~~~~~~~~~~   76 (341)
T PRK06270          4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVK-------EETGKLADYPEGG   76 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHH-------hccCCcccCcccc
Confidence            69999999999999998742         22567554 454211         1111110       11110000  001


Q ss_pred             ccCCHHHHhh--hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016620          226 RASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (386)
Q Consensus       226 ~~~~l~ell~--~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~aL~~g~i  291 (386)
                      ...++++++.  +.|+|+.|+|....+...--.-....++.|.-+|...-+.+ ..-++|.++.++...
T Consensus        77 ~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         77 GEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             ccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            1247888884  67999999996543322111222444566766665444333 345678877776544

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=94.67  E-value=0.17  Score=48.05  Aligned_cols=191  Identities=18%  Similarity=0.127  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC----Cc-------
Q 016620          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------  190 (386)
Q Consensus       122 ~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f----g~-------  190 (386)
                      .+|=-+++-+|+..|-.                     |+.|++.+|.|+|.|.-|-.+|+.|. ..    |.       
T Consensus         3 GTaaV~lAgll~Al~~~---------------------g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~   60 (255)
T PF03949_consen    3 GTAAVVLAGLLNALRVT---------------------GKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARK   60 (255)
T ss_dssp             HHHHHHHHHHHHHHHHH---------------------TS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHT
T ss_pred             hhHHHHHHHHHHHHHHh---------------------CCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhc
Confidence            35666788888887732                     35799999999999999999999874 44    65       


Q ss_pred             EEEEEcCChh-----hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC--CEEEEccCCChhhhhcccHHHHhcCC
Q 016620          191 NLIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMK  263 (386)
Q Consensus       191 ~V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiVvl~lPlt~~t~~li~~~~~~~mk  263 (386)
                      +++.+|+..-     ..+..+...|    .+....   .....+|+|+++.+  |+++-+--    .-+.|+++.++.|.
T Consensus        61 ~i~lvD~~Gll~~~r~~l~~~~~~~----a~~~~~---~~~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma  129 (255)
T PF03949_consen   61 RIWLVDSKGLLTDDREDLNPHKKPF----ARKTNP---EKDWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMA  129 (255)
T ss_dssp             TEEEEETTEEEBTTTSSHSHHHHHH----HBSSST---TT--SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCH
T ss_pred             cEEEEeccceEeccCccCChhhhhh----hccCcc---cccccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHh
Confidence            5888886521     1111111122    111111   11125999999999  99987752    47789999999998


Q ss_pred             C---CcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-C---CCCCCCCCeEEcCCCCCCc-----HHHHHH
Q 016620          264 K---EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVVPHIASAS-----KWTREG  331 (386)
Q Consensus       264 ~---gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~---~~L~~~~nvilTPHia~~t-----~~~~~~  331 (386)
                      +   ..++.=.|....--|-.=.++.+-+.=....-.-..-+|.. +   ...-+..|+++-|-++-..     ....+.
T Consensus       130 ~~~erPIIF~LSNPt~~aE~~peda~~~t~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~  209 (255)
T PF03949_consen  130 KHNERPIIFPLSNPTPKAECTPEDAYEWTDGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDE  209 (255)
T ss_dssp             HHSSSEEEEE-SSSCGGSSS-HHHHHHTTTSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HH
T ss_pred             ccCCCCEEEECCCCCCcccCCHHHHHhhCCceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHH
Confidence            7   88999998877644555555555442111111111111211 1   1234567888888665311     112255


Q ss_pred             HHHHHHHHHHHHHc
Q 016620          332 MATLAALNVLGKIK  345 (386)
Q Consensus       332 ~~~~~~~ni~~~~~  345 (386)
                      |...+++-|-++..
T Consensus       210 M~~aAA~aLA~~v~  223 (255)
T PF03949_consen  210 MFLAAAEALADLVS  223 (255)
T ss_dssp             HHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHhCC
Confidence            55555565555443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=94.61  E-value=0.15  Score=51.35  Aligned_cols=104  Identities=19%  Similarity=0.302  Sum_probs=67.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh----------HHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      ..++|+||.|-|+|+.|+..|+.| ...|++|+++|.+...          .+...-+...+.....+     .... +-
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~g-----a~~i-~~  275 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAG-----AEYI-TN  275 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcC-----ceEc-cc
Confidence            359999999999999999999997 4679999999876551          00000000000000001     1112 22


Q ss_pred             HHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016620          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (386)
Q Consensus       231 ~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v  277 (386)
                      ++++ ..|||.+=|     .+.+.|+.+...+++.. +++-.+-|++-
T Consensus       276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t  317 (411)
T COG0334         276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT  317 (411)
T ss_pred             cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC
Confidence            4444 468887654     45788899888888876 88888888874

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=94.50  E-value=0.13  Score=50.76  Aligned_cols=100  Identities=13%  Similarity=0.096  Sum_probs=53.0

Q ss_pred             eEEEEecChhHHHHHHHHHhcC----CcEEEEEcCChhhHHHHHHhhhhhhhhhc-------C------CCCccccccCC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKAN-------G------EQPVTWKRASS  229 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~f----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~-------~------~~~~~~~~~~~  229 (386)
                      +|||+|+|+||+.+.+.+. ..    +.+|...+.....+...|.-.|++.-...       +      ..........+
T Consensus         1 ~IaInGfGrIGR~vlr~l~-e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~   79 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALY-ESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT   79 (325)
T ss_pred             CEEEECCCHHHHHHHHHHH-hcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence            5899999999999999863 33    36777665433333334444443211000       0      01111111224


Q ss_pred             HHHH-h--hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          230 MDEV-L--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       230 l~el-l--~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      ++++ .  ..+|+|+-|.+..-. +    +.....++.|+..|.++
T Consensus        80 p~~~~w~~~gvDiVie~tG~~~s-~----e~a~~~l~aGa~~V~~S  120 (325)
T TIGR01532        80 PEALPWRALGVDLVLDCTGVYGN-R----EQGERHIRAGAKRVLFS  120 (325)
T ss_pred             hhhccccccCCCEEEEccchhcc-H----HHHHHHHHcCCeEEEec
Confidence            4443 2  478888888874211 1    22333456676666665

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=94.48  E-value=0.074  Score=54.52  Aligned_cols=131  Identities=21%  Similarity=0.224  Sum_probs=77.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ..|++|.|+|+|.-|.++|+.| ...|++|+++|.++.........     +   .........-....+....+|+|+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~-----~---~~~~i~~~~g~~~~~~~~~~d~vV~   75 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQP-----L---LLEGIEVELGSHDDEDLAEFDLVVK   75 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhh-----h---hccCceeecCccchhccccCCEEEE
Confidence            4499999999999999999998 58999999999765541110000     0   0011111111111256788999999


Q ss_pred             ccCCChhhh----------hcccH-HHHhcC--CCCcEEEEcCCCcccCHHHHHHHHHc--------CCcceEEeeccCC
Q 016620          243 HPVLDKTTY----------HLINK-ERLATM--KKEAILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFED  301 (386)
Q Consensus       243 ~lPlt~~t~----------~li~~-~~~~~m--k~gailIN~aRg~~vde~aL~~aL~~--------g~i~gaalDV~~~  301 (386)
                      ..-..+.+.          .++++ +.|-+.  +...+-|.-+-|+---+.-+...|++        |-|+..++|+..+
T Consensus        76 SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~  155 (448)
T COG0771          76 SPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ  155 (448)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence            843322221          23333 334332  22345566666886655556666654        4567788898887


Q ss_pred             C
Q 016620          302 E  302 (386)
Q Consensus       302 E  302 (386)
                      +
T Consensus       156 ~  156 (448)
T COG0771         156 A  156 (448)
T ss_pred             c
Confidence            4

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.43  E-value=0.21  Score=50.99  Aligned_cols=71  Identities=14%  Similarity=0.084  Sum_probs=52.4

Q ss_pred             ccccCCCeEEEEec----------ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC
Q 016620          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (386)
Q Consensus       160 g~~l~g~~vgIvG~----------G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (386)
                      +.++.|++|+|+|+          .+-...+++.| ...| ++|.+|||........              ... .....
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~--------------~~~-~~~~~  378 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK--------------LDG-LVTLV  378 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh--------------ccC-ceeeC
Confidence            45689999999998          56788999998 5775 9999999975321000              000 11236


Q ss_pred             CHHHHhhhCCEEEEccCC
Q 016620          229 SMDEVLREADVISLHPVL  246 (386)
Q Consensus       229 ~l~ell~~aDiVvl~lPl  246 (386)
                      +++|.++.||+|+++.+.
T Consensus       379 ~~~~~~~~ad~vvi~t~~  396 (415)
T PRK11064        379 SLDEALATADVLVMLVDH  396 (415)
T ss_pred             CHHHHHhCCCEEEECCCC
Confidence            889999999999999985

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=94.42  E-value=0.15  Score=48.21  Aligned_cols=105  Identities=19%  Similarity=0.245  Sum_probs=61.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCCCcccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQPVTWK  225 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~~~~~~  225 (386)
                      ..|.+++|+|+|+|.+|..+|+.|+ ..|. ++..+|...-..  + .++           .+...+.+++... .....
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp-~v~i~  105 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINP-HIAIE  105 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCC-CCEEE
Confidence            5699999999999999999999985 5565 677887543210  0 000           0000011111110 01010


Q ss_pred             ----c--cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          226 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       226 ----~--~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                          .  ..+.+++++++|+|+.|+- +.+++..+++.....   +.-+|..
T Consensus       106 ~~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~---~ip~v~~  153 (245)
T PRK05690        106 TINARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAA---KKPLVSG  153 (245)
T ss_pred             EEeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHh---CCEEEEe
Confidence                0  1234567899999999985 567787787765554   3345554

>PRK13529 malate dehydrogenase; Provisional

Probab=94.31  E-value=1.5  Score=46.08  Aligned_cols=208  Identities=19%  Similarity=0.196  Sum_probs=127.6

Q ss_pred             hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (386)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~  186 (386)
                      +..|.+.|..-   +.+|-.+++-+|+..|-                     .|+.+...+|.|+|.|.-|-.+|+.|..
T Consensus       261 r~~i~~FnDDi---QGTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~  316 (563)
T PRK13529        261 RDEICTFNDDI---QGTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIVA  316 (563)
T ss_pred             ccCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHH
Confidence            44688888755   45577788888888882                     2357899999999999999999998753


Q ss_pred             c---CCc-------EEEEEcCCh---hh--HHHHHHhhhhhhhhhcCCCCccc---cccCCHHHHhhhC--CEEEEccCC
Q 016620          187 G---FKM-------NLIYYDLYQ---AT--RLEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPVL  246 (386)
Q Consensus       187 ~---fg~-------~V~~~d~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~ell~~a--DiVvl~lPl  246 (386)
                      +   .|.       +++.+|+..   ..  .+..+-..|.   +... ....+   ....+|.|+++.+  |+++-+-  
T Consensus       317 ~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa---~~~~-~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S--  390 (563)
T PRK13529        317 AMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYA---RKRE-ELADWDTEGDVISLLEVVRNVKPTVLIGVS--  390 (563)
T ss_pred             HHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHh---hhcc-cccccccccCCCCHHHHHhccCCCEEEEec--
Confidence            2   466       889998762   11  1222222221   1100 00000   1125899999998  9988654  


Q ss_pred             ChhhhhcccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCC-cceEEeeccCCCCCCC----CCCCCCCCeE
Q 016620          247 DKTTYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNP-MFRVGLDVFEDEPYMK----PGLSEMKNAI  316 (386)
Q Consensus       247 t~~t~~li~~~~~~~mk~---gailIN~aRg~~vde~aL~~aL~--~g~-i~gaalDV~~~EP~~~----~~L~~~~nvi  316 (386)
                        ..-+.|+++.++.|.+   ..++.=.|....--|..=.+|.+  +|+ |.+.+.   .-.|...    ...-+..|++
T Consensus       391 --~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGs---pf~pv~~~G~~~~p~Q~NN~~  465 (563)
T PRK13529        391 --GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGS---PFAPVEYNGKTYPIGQCNNAY  465 (563)
T ss_pred             --CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECC---CCCCeeeCCeEeccCcCccee
Confidence              2247899999999987   88999888877644444444444  343 222222   1112211    1223567999


Q ss_pred             EcCCCCCCc-----HHHHHHHHHHHHHHHHHHHcCCCC
Q 016620          317 VVPHIASAS-----KWTREGMATLAALNVLGKIKGYPI  349 (386)
Q Consensus       317 lTPHia~~t-----~~~~~~~~~~~~~ni~~~~~g~~~  349 (386)
                      +-|-++-..     ....+.|...+++-|-.+..-+.+
T Consensus       466 iFPGiglGa~~~~a~~Itd~m~~aAA~alA~~v~~~~l  503 (563)
T PRK13529        466 IFPGLGLGVIASGARRVTDGMLMAAAHALADCVPLAKP  503 (563)
T ss_pred             ecccchhhhhhcCCcCCCHHHHHHHHHHHHhhCccccC
Confidence            999887522     122355666666666666554433

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.29  E-value=0.13  Score=54.30  Aligned_cols=92  Identities=14%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH---HH-hhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EV-LREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---el-l~~aDiVv  241 (386)
                      .++.|+|+|.+|+.+|+.| +..|.+|++.|.+++....         .++.+.. .......+.+   ++ ++++|.++
T Consensus       418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~~~---------~~~~g~~-~i~GD~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRVDE---------LRERGIR-AVLGNAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHHHH---------HHHCCCe-EEEcCCCCHHHHHhcCccccCEEE
Confidence            5689999999999999998 6789999999987654221         1111111 1111222322   21 56899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVN  270 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN  270 (386)
                      ++++.+.++..++-. . ..+.+...+|-
T Consensus       487 v~~~~~~~~~~iv~~-~-~~~~~~~~iia  513 (558)
T PRK10669        487 LTIPNGYEAGEIVAS-A-REKRPDIEIIA  513 (558)
T ss_pred             EEcCChHHHHHHHHH-H-HHHCCCCeEEE
Confidence            999987666555432 2 22344544443

>PRK06153 hypothetical protein; Provisional

Probab=94.28  E-value=0.19  Score=50.48  Aligned_cols=110  Identities=16%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh--------------HH-H--HHHhhhhhhhhhcCCCCc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--------------RL-E--KFVTAYGQFLKANGEQPV  222 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~--------------~~-~--~~~~~~~~~~~~~~~~~~  222 (386)
                      ..|++++|+|||+|.+|..++..|++ .|. ++..+|...-.              .. .  ...+...+.+..... ..
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LAR-~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~-~I  249 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVAK-TPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR-GI  249 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHHH-cCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC-eE
Confidence            36899999999999999999999864 555 78888854110              00 0  111111111111110 11


Q ss_pred             ccc-ccCCH--HHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          223 TWK-RASSM--DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       223 ~~~-~~~~l--~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      ... ...+-  -+.+..+|+|+.|+.. .+++.++++....   .+.-+|++|-|-.
T Consensus       250 ~~~~~~I~~~n~~~L~~~DiV~dcvDn-~~aR~~ln~~a~~---~gIP~Id~G~~l~  302 (393)
T PRK06153        250 VPHPEYIDEDNVDELDGFTFVFVCVDK-GSSRKLIVDYLEA---LGIPFIDVGMGLE  302 (393)
T ss_pred             EEEeecCCHHHHHHhcCCCEEEEcCCC-HHHHHHHHHHHHH---cCCCEEEeeecce
Confidence            000 01111  1356889999999974 5567777776654   3566888766543

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.28  E-value=0.13  Score=50.32  Aligned_cols=72  Identities=21%  Similarity=0.304  Sum_probs=44.0

Q ss_pred             eEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCC-C---CccccccCCHHHHhhhCCEEE
Q 016620          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-Q---PVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +|+|||.|.+|..+|-.|+. ++.-++..+|.........-.+     +..... .   .... ...+ .+.+++||+|+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-----L~~~~~~~~~~~~~i-~~~~-y~~~~~aDivv   73 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-----FHHATALTYSTNTKI-RAGD-YDDCADADIIV   73 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-----HHhhhccCCCCCEEE-EECC-HHHhCCCCEEE
Confidence            58999999999999987643 4444799999865432222222     111111 1   1111 1223 46789999999


Q ss_pred             EccC
Q 016620          242 LHPV  245 (386)
Q Consensus       242 l~lP  245 (386)
                      ++.-
T Consensus        74 itaG   77 (307)
T cd05290          74 ITAG   77 (307)
T ss_pred             ECCC
Confidence            9854

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.25  E-value=0.25  Score=48.09  Aligned_cols=98  Identities=19%  Similarity=0.261  Sum_probs=56.5

Q ss_pred             EEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhhCCEEEEc
Q 016620          168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       168 vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      |+|||.|.+|..+|-.|+ ..|  .++..+|.........-.+     +......  ........+ .+.+++||+|+++
T Consensus         1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~~g~~~D-----L~~~~~~~~~~~i~~~~~-~~~l~~aDiVIit   73 (300)
T cd00300           1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKAKGDALD-----LSHASAFLATGTIVRGGD-YADAADADIVVIT   73 (300)
T ss_pred             CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHHHHHHHh-----HHHhccccCCCeEEECCC-HHHhCCCCEEEEc
Confidence            589999999999998774 445  5899999876432221111     1111111  111221234 4578999999999


Q ss_pred             cCCChh---hh--------hccc--HHHHhcCCCCcEEEEcC
Q 016620          244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCS  272 (386)
Q Consensus       244 lPlt~~---t~--------~li~--~~~~~~mk~gailIN~a  272 (386)
                      ......   ++        .++.  .+.+....+.+++++++
T Consensus        74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            764221   11        1111  12233345788999987

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=94.23  E-value=0.18  Score=53.94  Aligned_cols=96  Identities=17%  Similarity=0.204  Sum_probs=60.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiV  240 (386)
                      ..+|.|+|+|.+|+.+++.| ...|.++++.|.+++....         .++.+. +.......+.+-+    +.+||.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~---------~~~~g~-~v~~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISAVNL---------MRKYGY-KVYYGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHHHHH---------HHhCCC-eEEEeeCCCHHHHHhcCCccCCEE
Confidence            45799999999999999998 6889999999988754211         122221 1111122332222    5789999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +++.+..+++..+  ....+++.|...++--+|
T Consensus       469 v~~~~d~~~n~~i--~~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        469 VITCNEPEDTMKI--VELCQQHFPHLHILARAR  499 (601)
T ss_pred             EEEeCCHHHHHHH--HHHHHHHCCCCeEEEEeC
Confidence            9999976555443  233444556655555444

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=94.22  E-value=0.56  Score=46.62  Aligned_cols=112  Identities=13%  Similarity=0.077  Sum_probs=66.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|||+|. .+|+.-++.+++.- ++++. ++|+..+. .+++.+.|       +     ...+.+++|++.+.|+++++
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~er-A~~~A~~~-------g-----i~~y~~~eell~d~Di~~V~   69 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSER-SRALAHRL-------G-----VPLYCEVEELPDDIDIACVV   69 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHH-HHHHHHHh-------C-----CCccCCHHHHhcCCCEEEEE
Confidence            57999999 68999888774323 57766 46776543 23332222       2     11358999999999999999


Q ss_pred             cCCC-hhhhhcccHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016620          244 PVLD-KTTYHLINKERLATMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (386)
Q Consensus       244 lPlt-~~t~~li~~~~~~~mk~ga-ilIN~aRg~~vde~aL~~aL~~g~i~ga  294 (386)
                      +|.+ +...|.  +-....++.|. +|+.===. .-+.++|+++.++..+...
T Consensus        70 ipt~~P~~~H~--e~a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        70 VRSAIVGGQGS--ALARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             eCCCCCCccHH--HHHHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEE
Confidence            9752 222221  22233344553 33332111 3566778888887655544

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.21  E-value=0.2  Score=46.37  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=31.6

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      +.|+++.|.|. |.||+.+++.|+ ..|.+|++.+|+..
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~-~~G~~V~~~~r~~~   41 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILA-GAGAHVVVNYRQKA   41 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeCCch
Confidence            67899999997 999999999984 67999998887643

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=94.21  E-value=0.31  Score=47.52  Aligned_cols=92  Identities=13%  Similarity=0.164  Sum_probs=53.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----hCC
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD  238 (386)
                      ..++||||.|.||...+..+.+.-++++. ++|++......++.       ++.+.   . ..+.++++++.     +.|
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A-------~~~Gi---~-~~~~~ie~LL~~~~~~dID   72 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARA-------RRLGV---A-TSAEGIDGLLAMPEFDDID   72 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHH-------HHcCC---C-cccCCHHHHHhCcCCCCCC
Confidence            35799999999999977665444466655 55665543211111       11121   1 12367888885     588


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +|+.++|..   .|.  +-.....+.|..+|+-+
T Consensus        73 iVf~AT~a~---~H~--e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         73 IVFDATSAG---AHV--RHAAKLREAGIRAIDLT  101 (302)
T ss_pred             EEEECCCHH---HHH--HHHHHHHHcCCeEEECC
Confidence            899999842   221  11222245677777665

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=94.16  E-value=0.22  Score=42.64  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=26.7

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~  198 (386)
                      +|.|+|+|.+|..+|+.|+ ..|. ++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence            5899999999999999985 6677 78889865

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.14  E-value=0.16  Score=52.94  Aligned_cols=119  Identities=18%  Similarity=0.132  Sum_probs=67.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      +.+++|.|+|+|..|.++|+.| +..|.+|.++|..........       +...+ .+..........+.+..+|+|+.
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------L~~~~-~~~~~~~g~~~~~~~~~~d~vv~   75 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTREAPPNLAA-------LRAEL-PDAEFVGGPFDPALLDGVDLVAL   75 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCCCchhHHH-------HHhhc-CCcEEEeCCCchhHhcCCCEEEE
Confidence            5688999999999999999987 689999999997543211110       11111 01111111112355678999988


Q ss_pred             c--cCCC-----hh-------hhhcccH-HHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620          243 H--PVLD-----KT-------TYHLINK-ERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       243 ~--lPlt-----~~-------t~~li~~-~~~~-~m--------k~gailIN~aRg~~vde~aL~~aL~~g~  290 (386)
                      .  +|.+     |.       ...++.+ +.+. .+        ++..+-|--+-|+.--..-|...|++..
T Consensus        76 sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g  147 (498)
T PRK02006         76 SPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG  147 (498)
T ss_pred             CCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            7  3432     21       1123322 2221 12        2235666667788766666677776543

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=94.11  E-value=0.12  Score=48.70  Aligned_cols=98  Identities=17%  Similarity=0.262  Sum_probs=57.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcC-CCCccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANG-EQPVTW  224 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~-~~~~~~  224 (386)
                      ..|++++|.|+|.|.+|..+|+.|+ ..|. ++..+|...-..  + .++           .+...+.+++.. ......
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~   98 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINP   98 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            4689999999999999999999985 4565 677777653221  0 000           000001111111 000000


Q ss_pred             c--c--cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620          225 K--R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (386)
Q Consensus       225 ~--~--~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~  260 (386)
                      .  .  ..+++++++++|+|+.|.- +.+++.++++...+
T Consensus        99 ~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~  137 (240)
T TIGR02355        99 INAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFA  137 (240)
T ss_pred             EeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            0  1  1235678899999998885 56788888776554

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.04  E-value=0.12  Score=51.21  Aligned_cols=99  Identities=19%  Similarity=0.286  Sum_probs=54.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcC-CcEEEE-EcCChhh-HHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhhCCEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVI  240 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~f-g~~V~~-~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiV  240 (386)
                      ++|+|+|. |.+|+.+++.|. .. ++++.+ .++.... .....   ++ .+  ......   ...++++ ...++|+|
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~-~~p~~elv~v~~~~~~g~~l~~~---~~-~~--~~~~~~---~~~~~~~~~~~~vD~V   72 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLL-NHPEVEIVAVTSRSSAGKPLSDV---HP-HL--RGLVDL---VLEPLDPEILAGADVV   72 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHH-cCCCceEEEEECccccCcchHHh---Cc-cc--ccccCc---eeecCCHHHhcCCCEE
Confidence            58999997 999999999884 44 677655 4532211 11110   00 00  000000   1122222 45789999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde  279 (386)
                      ++|+|... ...+. .   ...+.|..+||.|-.--.+.
T Consensus        73 f~alP~~~-~~~~v-~---~a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         73 FLALPHGV-SMDLA-P---QLLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             EECCCcHH-HHHHH-H---HHHhCCCEEEECCcccCCCC
Confidence            99999632 12221 2   22357899999985444433

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.04  E-value=0.14  Score=52.88  Aligned_cols=120  Identities=18%  Similarity=0.138  Sum_probs=70.0

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      +..+.+++|.|+|.|.+|.++|+.| +..|.+|.++|+..........    ..++..+   .....-.... ....+|+
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~----~~l~~~g---v~~~~~~~~~-~~~~~D~   81 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALA----AILEALG---ATVRLGPGPT-LPEDTDL   81 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHH----HHHHHcC---CEEEECCCcc-ccCCCCE
Confidence            3467899999999999999999987 5799999999966432211100    1122222   1111111111 3456999


Q ss_pred             EEEccCCChhhh----------hcccH-HHH-hcCCC----CcEEEEcCCCcccCHHHHHHHHHc
Q 016620          240 ISLHPVLDKTTY----------HLINK-ERL-ATMKK----EAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       240 Vvl~lPlt~~t~----------~li~~-~~~-~~mk~----gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      |+++.-..+.+.          .++++ +.+ ..+.+    ..+-|--+.|+.--..=|...|+.
T Consensus        82 Vv~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         82 VVTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             EEECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            998864333221          13333 222 33422    246677777887666666777765

>PRK05086 malate dehydrogenase; Provisional

Probab=93.96  E-value=0.22  Score=48.79  Aligned_cols=102  Identities=24%  Similarity=0.241  Sum_probs=58.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhhhCCEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~--~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~~aDiV  240 (386)
                      ++|+|||. |.||+.+|..++.  ..+..+..+|+..... ..-.+     +.... .......  ..++.+.++++|+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~-g~alD-----l~~~~-~~~~i~~~~~~d~~~~l~~~DiV   73 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTP-GVAVD-----LSHIP-TAVKIKGFSGEDPTPALEGADVV   73 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCc-ceehh-----hhcCC-CCceEEEeCCCCHHHHcCCCCEE
Confidence            58999999 9999999976633  4556888999764321 00001     00100 0011111  34667788999999


Q ss_pred             EEccCCChh---hh-hcc------cHHHHhcC---CCCcEEEEcCCC
Q 016620          241 SLHPVLDKT---TY-HLI------NKERLATM---KKEAILVNCSRG  274 (386)
Q Consensus       241 vl~lPlt~~---t~-~li------~~~~~~~m---k~gailIN~aRg  274 (386)
                      ++|.-....   ++ .++      -.+..+.|   .+.+++++++-.
T Consensus        74 IitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         74 LISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            999754221   11 111      22333333   567899988653

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.93  E-value=0.19  Score=52.12  Aligned_cols=116  Identities=18%  Similarity=0.238  Sum_probs=69.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .+.+++|.|+|+|.+|.++|+.| ...|++|.++|+..... .+.       +...+   ..........+.+..+|+|+
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~-------l~~~g---i~~~~~~~~~~~~~~~d~vV   79 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKL-------IEVTG---VADISTAEASDQLDSFSLVV   79 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHH-------HHhcC---cEEEeCCCchhHhcCCCEEE
Confidence            47889999999999999999998 58899999999764332 111       11111   11111112234456789998


Q ss_pred             Ecc---CCChhh-------hhcccHHHHh-c------C--CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          242 LHP---VLDKTT-------YHLINKERLA-T------M--KKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       242 l~l---Plt~~t-------~~li~~~~~~-~------m--k~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ...   |.++.-       ..++++-.+. +      +  +...+-|--+-|+.--..-|...|+..
T Consensus        80 ~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         80 TSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             eCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            774   222321       1233333332 1      1  223556666778887777777777753

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=93.93  E-value=0.23  Score=45.34  Aligned_cols=38  Identities=21%  Similarity=0.253  Sum_probs=32.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~  199 (386)
                      +.|.+++|.|+|+|.+|..+++.|+ ..|. ++..+|...
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d~   55 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDRT   55 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECCc
Confidence            5689999999999999999999985 5677 588888653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=93.92  E-value=0.23  Score=44.42  Aligned_cols=92  Identities=20%  Similarity=0.256  Sum_probs=52.5

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh---HHHHH----------HhhhhhhhhhcCCCCcccc------c
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT---RLEKF----------VTAYGQFLKANGEQPVTWK------R  226 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~---~~~~~----------~~~~~~~~~~~~~~~~~~~------~  226 (386)
                      +|+|+|+|.+|..+|+.|+ ..|. ++..+|...-.   ..+++          .+.....+++... .....      .
T Consensus         1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp-~v~i~~~~~~~~   78 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINP-FVKIEAINIKID   78 (174)
T ss_pred             CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCC-CCEEEEEEeecC
Confidence            5899999999999999985 5677 58888876510   00000          0000001111100 01110      0


Q ss_pred             cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       227 ~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      ..+++++++++|+|+.|.. +.+++..++....+.
T Consensus        79 ~~~~~~~l~~~DlVi~~~d-~~~~r~~i~~~~~~~  112 (174)
T cd01487          79 ENNLEGLFGDCDIVVEAFD-NAETKAMLAESLLGN  112 (174)
T ss_pred             hhhHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHH
Confidence            1245678889999998854 567777666655553

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN02602 lactate dehydrogenase

Probab=93.86  E-value=0.21  Score=49.71  Aligned_cols=102  Identities=18%  Similarity=0.242  Sum_probs=58.6

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|||.|.+|..+|-.|+ +++.-++..+|...........+..+    .....+ .......+.++ +++||+|+++
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~----~~~~~~~~~i~~~~dy~~-~~daDiVVit  112 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQH----AAAFLPRTKILASTDYAV-TAGSDLCIVT  112 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHh----hhhcCCCCEEEeCCCHHH-hCCCCEEEEC
Confidence            69999999999999998763 24555899999866432222222111    111111 12211234444 8999999998


Q ss_pred             cCCC--h-hhh-hcccH---------HHHhcCCCCcEEEEcC
Q 016620          244 PVLD--K-TTY-HLINK---------ERLATMKKEAILVNCS  272 (386)
Q Consensus       244 lPlt--~-~t~-~li~~---------~~~~~mk~gailIN~a  272 (386)
                      .-..  + +|+ .++..         +.+....+.+++|+++
T Consensus       113 AG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        113 AGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            5432  1 233 22211         2333346788998887

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=93.83  E-value=0.079  Score=53.11  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=31.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .++|||||-|..|+.++..+ +.+|.+|+++|+++..
T Consensus         2 ~~~igilG~Gql~~ml~~aa-~~lG~~v~~~d~~~~~   37 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAA-APLGYKVIVLDPDPDS   37 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCCC
Confidence            37899999999999999985 7899999999987643

>PLN02527 aspartate carbamoyltransferase

Probab=93.75  E-value=0.36  Score=47.17  Aligned_cols=74  Identities=20%  Similarity=0.383  Sum_probs=49.0

Q ss_pred             cCCCeEEEEecC---hhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          163 LKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       163 l~g~~vgIvG~G---~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      +.|.+|+++|-+   ++..+.+..+ ..| |++|.+..|..-...+.+.+    ..+..   +..+....++++.+++||
T Consensus       149 l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~---g~~~~~~~d~~~a~~~aD  220 (306)
T PLN02527        149 LDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKD----YLTSK---GVEWEESSDLMEVASKCD  220 (306)
T ss_pred             cCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHH----HHHHc---CCEEEEEcCHHHHhCCCC
Confidence            789999999975   6788888876 356 99999888754211111111    01111   122334578999999999


Q ss_pred             EEEEcc
Q 016620          239 VISLHP  244 (386)
Q Consensus       239 iVvl~l  244 (386)
                      +|....
T Consensus       221 vvyt~~  226 (306)
T PLN02527        221 VLYQTR  226 (306)
T ss_pred             EEEECC
Confidence            998843

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=93.71  E-value=2.4  Score=44.55  Aligned_cols=204  Identities=17%  Similarity=0.125  Sum_probs=122.5

Q ss_pred             CCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh-
Q 016620          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE-  186 (386)
Q Consensus       108 ~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~-  186 (386)
                      ..|.+.|..-   +.+|-.+++-+|+..|-.                     |+.|...+|.|+|.|.-|-.+|+.|.. 
T Consensus       264 ~~i~~FnDDi---QGTaaV~lAgll~Alr~~---------------------g~~l~d~riv~~GAGsAgiGia~ll~~~  319 (559)
T PTZ00317        264 NKYRCFNDDI---QGTGAVIAAGFLNALKLS---------------------GVPPEEQRIVFFGAGSAAIGVANNIADL  319 (559)
T ss_pred             cCCCEecccc---hhHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence            4588888654   456777888889888822                     356899999999999999999998742 


Q ss_pred             --cCCc-------EEEEEcCChh---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC--CEEEEccCCChh
Q 016620          187 --GFKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKT  249 (386)
Q Consensus       187 --~fg~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiVvl~lPlt~~  249 (386)
                        ..|.       +++.+|+..-   .+   +..+-..|.   +......  .....+|.|+++.+  |+++-+--    
T Consensus       320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa---~~~~~~~--~~~~~~L~e~v~~~KPtvLIG~S~----  390 (559)
T PTZ00317        320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFA---RTDISAE--DSSLKTLEDVVRFVKPTALLGLSG----  390 (559)
T ss_pred             HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHh---ccccccc--cccCCCHHHHHhccCCCEEEEecC----
Confidence              2466       7898886521   00   111111111   1000000  00135899999999  99886542    


Q ss_pred             hhhcccHHHHhcCCC---CcEEEEcCCCcccCHHHHHHHHH--cCCc-ceEEeeccCCCCCCC----CCCCCCCCeEEcC
Q 016620          250 TYHLINKERLATMKK---EAILVNCSRGPVIDEVALVEHLK--QNPM-FRVGLDVFEDEPYMK----PGLSEMKNAIVVP  319 (386)
Q Consensus       250 t~~li~~~~~~~mk~---gailIN~aRg~~vde~aL~~aL~--~g~i-~gaalDV~~~EP~~~----~~L~~~~nvilTP  319 (386)
                      .-+.|+++.++.|.+   ..++.=.|...---|..=.+|.+  +|+. .+.+.   .-+|...    ...-+..|+++-|
T Consensus       391 ~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGs---pf~pv~~~G~~~~p~Q~NN~~iFP  467 (559)
T PTZ00317        391 VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGS---PFPPVTLNGKTIQPSQGNNLYVFP  467 (559)
T ss_pred             CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECC---CCCCcccCCeeeccCcCcceeecc
Confidence            247899999999974   88998888866433333333443  3432 22221   1112211    1123567999999


Q ss_pred             CCCCCc-----HHHHHHHHHHHHHHHHHHHcCC
Q 016620          320 HIASAS-----KWTREGMATLAALNVLGKIKGY  347 (386)
Q Consensus       320 Hia~~t-----~~~~~~~~~~~~~ni~~~~~g~  347 (386)
                      -++-..     ....+.|...+++-|-.+..-+
T Consensus       468 GiglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~  500 (559)
T PTZ00317        468 GVGLGCAIAQPSYIPDEMLIAAAASLATLVSEE  500 (559)
T ss_pred             chhhhhHhhcccCCCHHHHHHHHHHHHhhCCcc
Confidence            876422     1223455555666666655443

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.70  E-value=0.17  Score=52.35  Aligned_cols=116  Identities=20%  Similarity=0.197  Sum_probs=69.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      +.|++|+|+|+|.-|.+.|+.| ...|++|+++|.......+...     .++..+.   ......+ ++.+.++|+|+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~~-----~l~~~~~---~~~~~~~-~~~~~~~d~vV~   75 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREVG-----ALADAAL---LVETEAS-AQRLAAFDVVVK   75 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHHH-----HHhhcCE---EEeCCCC-hHHccCCCEEEE
Confidence            5688999999999999999998 6899999999965432211100     0111110   0111112 355678999988


Q ss_pred             ccCCChhh----------hhcccHHHH--hc-CC-----CCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          243 HPVLDKTT----------YHLINKERL--AT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       243 ~lPlt~~t----------~~li~~~~~--~~-mk-----~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      ..-..+..          ..++++-.|  .. ++     ...+-|--+.|+.--..-|...|+.
T Consensus        76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            75332221          124554433  33 32     2456677778887766677777764

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=93.68  E-value=0.24  Score=46.79  Aligned_cols=97  Identities=14%  Similarity=0.174  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccH
Q 016620          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (386)
Q Consensus       177 G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~  256 (386)
                      |..+|-.++ ..|.+|+..+|+..--.+..++    ....+|     +...++-.+..+++.+.++.+|....|-.+. +
T Consensus        33 Ga~mAiefA-eAGHDVVLaePn~d~~dd~~w~----~vedAG-----V~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-r  101 (340)
T COG4007          33 GARMAIEFA-EAGHDVVLAEPNRDIMDDEHWK----RVEDAG-----VEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-R  101 (340)
T ss_pred             chHHHHHHH-HcCCcEEeecCCccccCHHHHH----HHHhcC-----cEEecCchhhhhcceEEEEecccchhhHHHH-H
Confidence            667887775 5799999999987654333222    223333     3334556688999999999999988888765 7


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       257 ~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      +.+..++.|+++.|++.-+.+   .|+..|+
T Consensus       102 ei~~hvpEgAVicnTCT~sp~---vLy~~LE  129 (340)
T COG4007         102 EILEHVPEGAVICNTCTVSPV---VLYYSLE  129 (340)
T ss_pred             HHHhhCcCCcEecccccCchh---HHHHHhh
Confidence            789999999999999986653   4666663

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=93.68  E-value=0.24  Score=48.45  Aligned_cols=78  Identities=17%  Similarity=0.139  Sum_probs=50.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      -+|+|+|. |-.|.++.++|+.--.+++.....+...                        ...+.+++++++|++++|+
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlal   57 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCL   57 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECC
Confidence            37999987 9999999999854445666655432110                        0124567778999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      |.. .+..+. ...   .+.|+.+||.|
T Consensus        58 p~~-~s~~~~-~~~---~~~g~~VIDlS   80 (310)
T TIGR01851        58 PDD-AAREAV-SLV---DNPNTCIIDAS   80 (310)
T ss_pred             CHH-HHHHHH-HHH---HhCCCEEEECC
Confidence            953 223322 111   24677888887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK10206 putative oxidoreductase; Provisional

Probab=93.67  E-value=0.49  Score=46.89  Aligned_cols=68  Identities=15%  Similarity=0.221  Sum_probs=42.2

Q ss_pred             eEEEEecChhHHH-HHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620          167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (386)
Q Consensus       167 ~vgIvG~G~IG~~-iA~~L~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv  241 (386)
                      ++||||+|.|++. .+..+... -++++. ++|++....  ++.+.|       +    ....+.+++++++  +.|+|+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~----~~~~~~~~~ell~~~~iD~V~   69 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------S----HIHFTSDLDEVLNDPDVKLVV   69 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence            6999999998864 24433222 357775 578765332  211111       1    0123578999996  579999


Q ss_pred             EccCCC
Q 016620          242 LHPVLD  247 (386)
Q Consensus       242 l~lPlt  247 (386)
                      +|+|..
T Consensus        70 I~tp~~   75 (344)
T PRK10206         70 VCTHAD   75 (344)
T ss_pred             EeCCch
Confidence            999964

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=93.63  E-value=0.28  Score=46.50  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.6

Q ss_pred             cCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       163 l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      +.|+++.|.|.+   .||+++|+.|+ .-|++|+..+++
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence            789999999997   59999999985 679999988775

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=93.62  E-value=0.29  Score=52.60  Aligned_cols=93  Identities=19%  Similarity=0.164  Sum_probs=57.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----HhhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~~aDiV  240 (386)
                      ..+|-|+|+|++|+.+|+.| +..|.++++.|.+++....         .++.+. ........+.+-    -+.++|.|
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v~~---------~~~~g~-~v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHIET---------LRKFGM-KVFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHHHH---------HHhcCC-eEEEEeCCCHHHHHhcCCCcCCEE
Confidence            46799999999999999998 6789999999987754211         122221 111112233322    25689999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN  270 (386)
                      +++++.++.+..+  ....+.+.|...++-
T Consensus       469 vv~~~d~~~n~~i--~~~ar~~~p~~~iia  496 (621)
T PRK03562        469 INAIDDPQTSLQL--VELVKEHFPHLQIIA  496 (621)
T ss_pred             EEEeCCHHHHHHH--HHHHHHhCCCCeEEE
Confidence            9999865554443  233444445544443

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.61  E-value=0.26  Score=50.76  Aligned_cols=115  Identities=18%  Similarity=0.271  Sum_probs=71.7

Q ss_pred             cCCCeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~-iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ..+++|.|+|+|..|.+ +|+.| +..|.+|.++|.........        +...+   .......+ .+.+..+|+|+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~--------l~~~g---i~~~~~~~-~~~~~~~d~vv   71 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQR--------LLELG---AIIFIGHD-AENIKDADVVV   71 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHH--------HHHCC---CEEeCCCC-HHHCCCCCEEE
Confidence            56789999999999999 79987 68999999999765432211        11112   11111112 34566899998


Q ss_pred             EccCCChhhh----------hcccHH-HHhc-CC-CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620          242 LHPVLDKTTY----------HLINKE-RLAT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       242 l~lPlt~~t~----------~li~~~-~~~~-mk-~gailIN~aRg~~vde~aL~~aL~~g~  290 (386)
                      ...-..+...          .++++- .+.. ++ ...+-|--+.|+.--..-+...|+...
T Consensus        72 ~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         72 YSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            8753322211          245443 3333 33 345667778899877777777777543

>PRK08328 hypothetical protein; Provisional

Probab=93.61  E-value=0.25  Score=46.27  Aligned_cols=107  Identities=24%  Similarity=0.259  Sum_probs=61.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHHH---hhhh---------hhhhhcCCCCccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKFV---TAYG---------QFLKANGEQPVTW  224 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~~---~~~~---------~~~~~~~~~~~~~  224 (386)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+.  + .++.   +..+         ..+++.. .....
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~n-p~v~v  100 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFN-SDIKI  100 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhC-CCCEE
Confidence            4689999999999999999999985 5666 688888543210  0 0000   0000         0011100 00111


Q ss_pred             c------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          225 K------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       225 ~------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .      ...+++++++++|+|+.|+-. .+++.++++-..   +.+.-+|+.+-
T Consensus       101 ~~~~~~~~~~~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~---~~~ip~i~g~~  151 (231)
T PRK08328        101 ETFVGRLSEENIDEVLKGVDVIVDCLDN-FETRYLLDDYAH---KKGIPLVHGAV  151 (231)
T ss_pred             EEEeccCCHHHHHHHHhcCCEEEECCCC-HHHHHHHHHHHH---HcCCCEEEEee
Confidence            0      113456778899999988864 567777765433   23455665443

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=93.61  E-value=0.41  Score=47.04  Aligned_cols=109  Identities=17%  Similarity=0.191  Sum_probs=67.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHh------cCCcEE--EEEcCChhhHHHHHHhhhh---hhh--hhcCCCCccccccCCH
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVE------GFKMNL--IYYDLYQATRLEKFVTAYG---QFL--KANGEQPVTWKRASSM  230 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~------~fg~~V--~~~d~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~l  230 (386)
                      .-.+|+|||.|+=|..+|+.++.      .|..+|  ++++-....+.+...+...   +..  -+.-..|.......++
T Consensus        20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl   99 (372)
T KOG2711|consen   20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL   99 (372)
T ss_pred             CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence            44689999999999999998642      234444  4443322221011111000   000  0111233334446789


Q ss_pred             HHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       231 ~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      .+++.+||+++..+|.  +-..-|.++...+.|+++..|...-|
T Consensus       100 ~ea~~dADilvf~vPh--Qf~~~ic~~l~g~vk~~~~aISL~KG  141 (372)
T KOG2711|consen  100 VEAAKDADILVFVVPH--QFIPRICEQLKGYVKPGATAISLIKG  141 (372)
T ss_pred             HHHhccCCEEEEeCCh--hhHHHHHHHHhcccCCCCeEEEeecc
Confidence            9999999999999996  33444568888899999999888766

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=93.59  E-value=0.26  Score=49.55  Aligned_cols=97  Identities=19%  Similarity=0.157  Sum_probs=59.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HH-----------HHhhhhhhhhhcCCCCcccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EK-----------FVTAYGQFLKANGEQPVTWK  225 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~-----------~~~~~~~~~~~~~~~~~~~~  225 (386)
                      ..|.+++|.|+|+|.+|..+++.|+ ..|. ++..+|...-..  + ++           ..+...+.+++... ...+.
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np-~v~i~  114 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQP-DIRVN  114 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCC-CCeeE
Confidence            5699999999999999999999985 6676 788888652110  0 00           00000111111110 01111


Q ss_pred             ------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620          226 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (386)
Q Consensus       226 ------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~  260 (386)
                            ...+.+++++++|+|+.|+- +.+++.++++....
T Consensus       115 ~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~  154 (370)
T PRK05600        115 ALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEI  154 (370)
T ss_pred             EeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence                  11345678999999988875 56788888776544

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=93.56  E-value=0.2  Score=40.04  Aligned_cols=66  Identities=21%  Similarity=0.168  Sum_probs=40.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVvl  242 (386)
                      .+++|+|+|+.|++++..+.+..|++ +.++|.++...-           +...    +...+.+++++.+.  .|+-++
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G-----------~~i~----gipV~~~~~~l~~~~~i~iaii   68 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIG-----------KEIG----GIPVYGSMDELEEFIEIDIAII   68 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTT-----------SEET----TEEEESSHHHHHHHCTTSEEEE
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccC-----------cEEC----CEEeeccHHHhhhhhCCCEEEE
Confidence            46999999999999885443344543 345565443210           0001    11123477777776  999999


Q ss_pred             ccCC
Q 016620          243 HPVL  246 (386)
Q Consensus       243 ~lPl  246 (386)
                      ++|.
T Consensus        69 ~VP~   72 (96)
T PF02629_consen   69 TVPA   72 (96)
T ss_dssp             ES-H
T ss_pred             EcCH
Confidence            9994

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.55  E-value=0.54  Score=48.34  Aligned_cols=113  Identities=22%  Similarity=0.233  Sum_probs=68.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .+.|++|.|+|+|.+|.++|+.| +..|.+|.++|....... .        +...+..   .... . .+-+..+|+|+
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~--------l~~~g~~---~~~~-~-~~~~~~~d~vv   70 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K--------AAAAGIT---TADL-R-TADWSGFAALV   70 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H--------HHhcCcc---ccCC-C-hhHHcCCCEEE
Confidence            37789999999999999999987 689999999997643221 1        1111211   1111 1 12356799988


Q ss_pred             Ecc--CCC-h----h---hhh----cccH-HHHhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          242 LHP--VLD-K----T---TYH----LINK-ERLAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       242 l~l--Plt-~----~---t~~----li~~-~~~~~-m-----k~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ...  |.+ +    .   ++.    ++.+ +.+.+ +     +...+-|.-+.|+.--..-|...|+..
T Consensus        71 ~sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~  139 (460)
T PRK01390         71 LSPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREA  139 (460)
T ss_pred             ECCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            654  221 1    1   111    1332 22222 2     345667888889987777777777753

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=93.48  E-value=0.52  Score=48.22  Aligned_cols=96  Identities=11%  Similarity=0.116  Sum_probs=61.8

Q ss_pred             ccccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 016620          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (386)
Q Consensus       160 g~~l~g~~vgIvG~----------G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (386)
                      +..+.|++|+|+|+          .+-+..+++.| ...|.+|.+|||........         +..+        ...
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~---------~~~~--------~~~  370 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR---------REYG--------IIP  370 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH---------HhcC--------ccc
Confidence            35689999999999          57788999998 67899999999974321100         0000        011


Q ss_pred             HH-HHhhhCCEEEEccCCChhhhhcccHHHHh-cCCCCcEEEEcCCCcc
Q 016620          230 MD-EVLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV  276 (386)
Q Consensus       230 l~-ell~~aDiVvl~lPlt~~t~~li~~~~~~-~mk~gailIN~aRg~~  276 (386)
                      ++ ..++.||.|+++..- ++-. -++-+.+. .|+...+++| +|+-+
T Consensus       371 ~~~~~~~~ad~vvi~t~h-~~f~-~~~~~~~~~~~~~~~~iiD-~r~~~  416 (425)
T PRK15182        371 VSEVKSSHYDAIIVAVGH-QQFK-QMGSEDIRGFGKDKHVLYD-LKYVL  416 (425)
T ss_pred             chhhhhcCCCEEEEccCC-HHhh-cCCHHHHHHhcCCCCEEEE-CCCCC
Confidence            21 236789999999985 3323 34544444 4554458888 46544

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=93.44  E-value=4.8  Score=39.91  Aligned_cols=79  Identities=11%  Similarity=0.065  Sum_probs=48.0

Q ss_pred             c-CCCeEEEEecC-------hhHHHHHHHHHhcCCcEEEEEcC-ChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 016620          163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (386)
Q Consensus       163 l-~g~~vgIvG~G-------~IG~~iA~~L~~~fg~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (386)
                      + .|.+|+|+|.|       ++..+++..+ ..||++|.+..| ..-...+.+.+.-.+..+..+   ..+....+++|.
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea  241 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAESG---GSLTVSHDIDSA  241 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            6 78999887654       6778888876 579999999998 321111111110000011111   223345799999


Q ss_pred             hhhCCEEEEccC
Q 016620          234 LREADVISLHPV  245 (386)
Q Consensus       234 l~~aDiVvl~lP  245 (386)
                      ++++|+|..-.-
T Consensus       242 ~~~aDvvy~~~w  253 (335)
T PRK04523        242 YAGADVVYAKSW  253 (335)
T ss_pred             hCCCCEEEecee
Confidence            999999987543

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=93.38  E-value=0.29  Score=47.77  Aligned_cols=69  Identities=22%  Similarity=0.361  Sum_probs=45.3

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCC--cE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCE
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFK--MN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg--~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  239 (386)
                      .+|||||+|.+++. .+..+ +..+  +. |.++|++... .+.+.+.|       +..    ..+.+++++++.  .|+
T Consensus         4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~iD~   70 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEF-------GIA----KAYTDLEELLADPDIDA   70 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence            47999999987754 66665 4554  34 5566887754 22222222       211    246799999986  589


Q ss_pred             EEEccCCC
Q 016620          240 ISLHPVLD  247 (386)
Q Consensus       240 Vvl~lPlt  247 (386)
                      |++|+|..
T Consensus        71 V~Iatp~~   78 (342)
T COG0673          71 VYIATPNA   78 (342)
T ss_pred             EEEcCCCh
Confidence            99999963

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.38  E-value=0.37  Score=44.35  Aligned_cols=37  Identities=24%  Similarity=0.170  Sum_probs=30.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      .+.++++.|.|. |.||+.+|+.|+ ..|++|+...++.
T Consensus         2 ~~~~~~vlItG~~~~iG~~la~~l~-~~g~~v~~~~~~~   39 (245)
T PRK12937          2 TLSNKVAIVTGASRGIGAAIARRLA-ADGFAVAVNYAGS   39 (245)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCCC
Confidence            367899999985 999999999984 6799988776544

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=93.36  E-value=6.2  Score=38.68  Aligned_cols=76  Identities=14%  Similarity=0.184  Sum_probs=49.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|++|+++|- +++..+++..+ ..||++|.+..|..-.  +...+..-+.....+    ......++++.++++|+|
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~--~~~~~~~~~~~~~~g----~i~~~~d~~~av~~aDvv  222 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAK--ENIHAQTVERAKKKG----TLSWEMNLHKAVSHADYV  222 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCcc--HHHHHHHHHHHHhcC----CeEEEeCHHHHhCCCCEE
Confidence            478999999997 78899988887 5799999999885421  110000000011111    122347899999999999


Q ss_pred             EEcc
Q 016620          241 SLHP  244 (386)
Q Consensus       241 vl~l  244 (386)
                      ..-.
T Consensus       223 y~d~  226 (311)
T PRK14804        223 YTDT  226 (311)
T ss_pred             Eeee
Confidence            8743

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=93.31  E-value=0.53  Score=45.55  Aligned_cols=71  Identities=15%  Similarity=0.258  Sum_probs=43.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      .+|||||.|.||+..+..+.+.-++++. ++|+++......+.       ++.+.   . ....+.+++++  +.|+|++
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A-------~~~Gi---~-~~~~~~e~ll~~~dIDaV~i   70 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARA-------RELGV---K-TSAEGVDGLLANPDIDIVFD   70 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHH-------HHCCC---C-EEECCHHHHhcCCCCCEEEE
Confidence            3799999999999887655343456655 45665543211111       11111   1 12357888875  5788999


Q ss_pred             ccCCC
Q 016620          243 HPVLD  247 (386)
Q Consensus       243 ~lPlt  247 (386)
                      ++|..
T Consensus        71 aTp~~   75 (285)
T TIGR03215        71 ATSAK   75 (285)
T ss_pred             CCCcH
Confidence            99953

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=93.29  E-value=0.1  Score=45.98  Aligned_cols=70  Identities=17%  Similarity=0.123  Sum_probs=47.3

Q ss_pred             EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhhCCEEEEcc
Q 016620          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       168 vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      |.|+|. |.+|+.+++.| ..-|.+|++..|++.+...   .        .+...  .......++.+.++.+|.|+.++
T Consensus         1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~---~--------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~   68 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED---S--------PGVEIIQGDLFDPDSVKAALKGADAVIHAA   68 (183)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH---C--------TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred             eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc---c--------cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence            678995 99999999998 5788999999998765321   0        00000  00111234567788999999999


Q ss_pred             CCChh
Q 016620          245 VLDKT  249 (386)
Q Consensus       245 Plt~~  249 (386)
                      +.+..
T Consensus        69 ~~~~~   73 (183)
T PF13460_consen   69 GPPPK   73 (183)
T ss_dssp             HSTTT
T ss_pred             hhhcc
Confidence            75443

...

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=93.16  E-value=0.2  Score=49.05  Aligned_cols=45  Identities=22%  Similarity=0.297  Sum_probs=31.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAY  210 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~  210 (386)
                      .+|||=|||+||+.+++.+...- .++|.+.+........++...|
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~Llky   47 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKY   47 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhh
Confidence            37999999999999999874333 4999988763333333343333

>PRK08223 hypothetical protein; Validated

Probab=93.13  E-value=0.38  Score=46.57  Aligned_cols=99  Identities=11%  Similarity=0.090  Sum_probs=57.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCC-CCccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGE-QPVTW  224 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~-~~~~~  224 (386)
                      ..|++++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+.  + +++           .+...+.+++... .....
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~  101 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA  101 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence            4589999999999999999999986 5565 677777542210  0 000           0000111111110 00100


Q ss_pred             ----cccCCHHHHhhhCCEEEEccCCC-hhhhhcccHHHHh
Q 016620          225 ----KRASSMDEVLREADVISLHPVLD-KTTYHLINKERLA  260 (386)
Q Consensus       225 ----~~~~~l~ell~~aDiVvl~lPlt-~~t~~li~~~~~~  260 (386)
                          ....+.+++++++|+|+-++..- -+++.++++....
T Consensus       102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~  142 (287)
T PRK08223        102 FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQ  142 (287)
T ss_pred             EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHH
Confidence                01245678899999998777532 2677888776554

>PRK06701 short chain dehydrogenase; Provisional

Probab=93.10  E-value=0.26  Score=47.37  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=33.1

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ..+.|+++.|.|. |.||..+|+.|+ ..|++|+.++++..
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~   81 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH   81 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            4688999999986 889999999985 67999999987653

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.08  E-value=3  Score=44.10  Aligned_cols=202  Identities=19%  Similarity=0.152  Sum_probs=123.0

Q ss_pred             hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (386)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~  186 (386)
                      +..|.+.|..-   +.+|-.+++-+|+..|-.                     |+.|...+|.|+|.|.-|-.+|+.|..
T Consensus       287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~~---------------------g~~l~d~riv~~GAGsAgigia~ll~~  342 (581)
T PLN03129        287 RTTHLCFNDDI---QGTAAVALAGLLAALRAT---------------------GGDLADQRILFAGAGEAGTGIAELIAL  342 (581)
T ss_pred             ccCCCEecccc---chHHHHHHHHHHHHHHHh---------------------CCchhhceEEEECCCHHHHHHHHHHHH
Confidence            45788888755   455777888888888822                     357999999999999999999998753


Q ss_pred             c----CCc-------EEEEEcCChh---hH---HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEEEccCCC
Q 016620          187 G----FKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLD  247 (386)
Q Consensus       187 ~----fg~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVvl~lPlt  247 (386)
                      .    .|.       +++.+|+..-   .+   +..+-..|.   +. .      ....+|+|+++.  .|+++-+--  
T Consensus       343 ~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa---~~-~------~~~~~L~e~v~~vkptvLIG~S~--  410 (581)
T PLN03129        343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFA---HD-H------EPGASLLEAVKAIKPTVLIGLSG--  410 (581)
T ss_pred             HHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHH---hh-c------ccCCCHHHHHhccCCCEEEEecC--
Confidence            2    355       7888886531   00   111111111   11 0      123689999998  899887652  


Q ss_pred             hhhhhcccHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH--cCCcceEEeeccCCCCCC-C---CCCCCCCCeEEc
Q 016620          248 KTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK--QNPMFRVGLDVFEDEPYM-K---PGLSEMKNAIVV  318 (386)
Q Consensus       248 ~~t~~li~~~~~~~mk---~gailIN~aRg~~vde~aL~~aL~--~g~i~gaalDV~~~EP~~-~---~~L~~~~nvilT  318 (386)
                        .-+.|+++.++.|.   +..++.=.|...---|..=.+|.+  +|+...|.=  ..-.|.. +   ...-+..|+++-
T Consensus       411 --~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtG--SPf~pv~~~Gr~~~p~Q~NN~~iF  486 (581)
T PLN03129        411 --VGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASG--SPFDPVEYNGKTFHPGQANNAYIF  486 (581)
T ss_pred             --CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeC--CCCCCeeeCCeeecCccccceeec
Confidence              24789999999995   778888887765322222223333  254222211  1111111 1   112356799999


Q ss_pred             CCCCCCc-----HHHHHHHHHHHHHHHHHHHcCCC
Q 016620          319 PHIASAS-----KWTREGMATLAALNVLGKIKGYP  348 (386)
Q Consensus       319 PHia~~t-----~~~~~~~~~~~~~ni~~~~~g~~  348 (386)
                      |-++-..     ....+.|...+++-|-.+..-+.
T Consensus       487 PGiglGal~~~a~~Itd~m~~aAA~aLA~~v~~~~  521 (581)
T PLN03129        487 PGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEE  521 (581)
T ss_pred             cchhhHHHhcCCcCCCHHHHHHHHHHHHHhCCccc
Confidence            9886522     12235566666666666655444

>PRK04148 hypothetical protein; Provisional

Probab=93.01  E-value=0.39  Score=41.11  Aligned_cols=72  Identities=15%  Similarity=0.114  Sum_probs=46.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      +++++.+||+| -|..+|+.| +..|.+|++.|.++......         +..+..-....-...-.++.+.+|+|-..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~aV~~a---------~~~~~~~v~dDlf~p~~~~y~~a~liysi   84 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKAVEKA---------KKLGLNAFVDDLFNPNLEIYKNAKLIYSI   84 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHHHHHH---------HHhCCeEEECcCCCCCHHHHhcCCEEEEe
Confidence            56789999999 999999998 57899999999887642111         11111111111112234677888888766


Q ss_pred             cCC
Q 016620          244 PVL  246 (386)
Q Consensus       244 lPl  246 (386)
                      =|-
T Consensus        85 rpp   87 (134)
T PRK04148         85 RPP   87 (134)
T ss_pred             CCC
Confidence            663

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.98  E-value=0.35  Score=49.49  Aligned_cols=118  Identities=14%  Similarity=0.139  Sum_probs=69.9

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      +.++++.|+|.|.+|.++|+.| ...|.+|.++|..........       ++.. ..+........-++.+..+|+|+.
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~-------l~~~-~~gi~~~~g~~~~~~~~~~d~vv~   73 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQ-------IGKM-FDGLVFYTGRLKDALDNGFDILAL   73 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHH-------Hhhc-cCCcEEEeCCCCHHHHhCCCEEEE
Confidence            5688999999999999999997 589999999997654311110       1110 011111111112344578999988


Q ss_pred             ccCCChhhh----------hcccH-HHHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          243 HPVLDKTTY----------HLINK-ERLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       243 ~lPlt~~t~----------~li~~-~~~~~-mk---~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ..-..++..          .++.+ +.+.. ++   ...+-|--+.|+.--..-+...|+..
T Consensus        74 spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~  135 (445)
T PRK04308         74 SPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC  135 (445)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            754433221          13333 23333 32   24566777778876667777777653

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=92.96  E-value=0.38  Score=47.14  Aligned_cols=103  Identities=19%  Similarity=0.292  Sum_probs=59.0

Q ss_pred             eEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhhCCEEE
Q 016620          167 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS  241 (386)
Q Consensus       167 ~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDiVv  241 (386)
                      +|+|+|. |.+|..+|-.|+. .+.-++..+|.....  ..-.+     +.. .........   ..++.+.++.||+|+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~--g~a~D-----L~~-~~~~~~i~~~~~~~~~~~~~~daDivv   72 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAA--GVAAD-----LSH-IPTAASVKGFSGEEGLENALKGADVVV   72 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCc--EEEch-----hhc-CCcCceEEEecCCCchHHHcCCCCEEE
Confidence            5899999 9999999987643 444589999986511  11011     111 111111221   123568899999999


Q ss_pred             EccCCC--h-hhh--------hccc--HHHHhcCCCCcEEEEcCCCcccCH
Q 016620          242 LHPVLD--K-TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       242 l~lPlt--~-~t~--------~li~--~~~~~~mk~gailIN~aRg~~vde  279 (386)
                      ++.-..  + .++        .++.  .+.+..-.+.+++++++-  ++|.
T Consensus        73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv  121 (312)
T TIGR01772        73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS  121 (312)
T ss_pred             EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence            886532  1 122        1111  123333468899999865  4443

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=92.96  E-value=0.37  Score=41.90  Aligned_cols=84  Identities=18%  Similarity=0.200  Sum_probs=51.0

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ...|++|++||+=   ++++++| +.-+.+++++|+++......              . . .......++++.+||+|+
T Consensus         8 ~~~~~~V~~VG~f---~P~~~~l-~~~~~~v~v~d~~~~~~~~~--------------~-~-~~~~~~~~~~l~~aD~vi   67 (147)
T PF04016_consen    8 IGPGDKVGMVGYF---QPLVEKL-KERGAEVRVFDLNPDNIGEE--------------P-G-DVPDEDAEEILPWADVVI   67 (147)
T ss_dssp             TTTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--SS--------------C-T--EEGGGHHHHGGG-SEEE
T ss_pred             hcCCCEEEEEcCc---HHHHHHH-hcCCCCEEEEECCCCCCCCC--------------C-C-cCCHHHHHHHHccCCEEE
Confidence            3578999999971   2367776 56789999999987542110              0 0 012346688999999998


Q ss_pred             EccCCChhhhhccc---HHHHhcCCCCcEEEEc
Q 016620          242 LHPVLDKTTYHLIN---KERLATMKKEAILVNC  271 (386)
Q Consensus       242 l~lPlt~~t~~li~---~~~~~~mk~gailIN~  271 (386)
                      +.--      -++|   ++.+++.+++..++=+
T Consensus        68 iTGs------TlvN~Ti~~iL~~~~~~~~vil~   94 (147)
T PF04016_consen   68 ITGS------TLVNGTIDDILELARNAREVILY   94 (147)
T ss_dssp             EECH------HCCTTTHHHHHHHTTTSSEEEEE
T ss_pred             EEee------eeecCCHHHHHHhCccCCeEEEE
Confidence            7641      2222   4566667756555443

; PDB: 3L5O_B 3NPG_A.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.93  E-value=0.3  Score=45.09  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ++.++++.|+|. |.||+++++.|+ ..|++|++.+|+...
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~-~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFA-AEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            367899999986 899999999984 679999999998643

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=92.84  E-value=0.6  Score=45.97  Aligned_cols=76  Identities=20%  Similarity=0.096  Sum_probs=43.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-cCCc-----EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 016620          166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~-~fg~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~  235 (386)
                      ++|+|+|. |.+|..+|-.|.. ++--     ++..+|.....  ....-.+     +.... ..........+..+.++
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D-----l~~~~~~~~~~~~i~~~~~~~~~   77 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAME-----LEDCAFPLLAEIVITDDPNVAFK   77 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehh-----hhhccccccCceEEecCcHHHhC
Confidence            48999999 9999999987642 3322     78999984322  1111011     01110 00001111235567789


Q ss_pred             hCCEEEEccCC
Q 016620          236 EADVISLHPVL  246 (386)
Q Consensus       236 ~aDiVvl~lPl  246 (386)
                      +||+|+++.-.
T Consensus        78 daDivvitaG~   88 (322)
T cd01338          78 DADWALLVGAK   88 (322)
T ss_pred             CCCEEEEeCCC
Confidence            99999998643

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08265 short chain dehydrogenase; Provisional

Probab=92.79  E-value=0.35  Score=45.41  Aligned_cols=38  Identities=29%  Similarity=0.310  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+.|+++.|.|. |.||+++|+.|+ ..|++|+..+|+..
T Consensus         3 ~~~~k~vlItGas~gIG~~ia~~l~-~~G~~V~~~~r~~~   41 (261)
T PRK08265          3 GLAGKVAIVTGGATLIGAAVARALV-AAGARVAIVDIDAD   41 (261)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            478899999987 999999999985 68999999998764

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=92.77  E-value=0.3  Score=47.32  Aligned_cols=108  Identities=20%  Similarity=0.218  Sum_probs=67.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh-hhcCC-CCcccccc----------C
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-KANGE-QPVTWKRA----------S  228 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~----------~  228 (386)
                      -...+.++-++|+|-+|-..+-. +.-.|+-|..+|-+....  +..+..+... +...+ ...++.+.          .
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~K--eqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~  236 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKK--EQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAE  236 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHh--hhhhhcccccccccccccCCCccccCCHHHHHHHHH
Confidence            34677888999999999998876 466788888888654331  1111111000 00000 00111111          1


Q ss_pred             CHHHHhhhCCEEEEc--cCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          229 SMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       229 ~l~ell~~aDiVvl~--lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      -+.|.+++.|||+..  .|..|. -.|+.++....||||+++||.+
T Consensus       237 ~~a~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         237 LVAEQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHHHHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence            234567899999775  566544 6688999999999999999973

>PRK06392 homoserine dehydrogenase; Provisional

Probab=92.71  E-value=0.38  Score=47.50  Aligned_cols=121  Identities=13%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             eEEEEecChhHHHHHHHHHh-------cCCcEEEEE-cCChhhHHHHHH--hhhhhhhhhcCCCCccccccCCHHHHh-h
Q 016620          167 TVGVIGAGRIGSAYARMMVE-------GFKMNLIYY-DLYQATRLEKFV--TAYGQFLKANGEQPVTWKRASSMDEVL-R  235 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~-------~fg~~V~~~-d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~ell-~  235 (386)
                      +|+|+|+|.+|+.+++.|.+       +++.+|.+. |++..-..+.-.  +..-+..+. +..........++++++ .
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~-g~l~~~~~~~~~~~~ll~~   80 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEK-GRLEEIDYEKIKFDEIFEI   80 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhc-CccccCCCCcCCHHHHhcC
Confidence            79999999999999998743       267776544 543211000000  000000000 10000000011456654 4


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQN  289 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v-de~aL~~aL~~g  289 (386)
                      ++|+|+=|.|...+...-. .-....++.|.-+|-..-|.+. .-+.|.++.+++
T Consensus        81 ~~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~  134 (326)
T PRK06392         81 KPDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN  134 (326)
T ss_pred             CCCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence            6899999998532111111 1223445677777777766663 456677766654

>PRK07576 short chain dehydrogenase; Provisional

Probab=92.69  E-value=0.33  Score=45.75  Aligned_cols=40  Identities=20%  Similarity=0.159  Sum_probs=34.3

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .++.|+++.|.|. |.||+.+++.|+ ..|++|+..+|+...
T Consensus         5 ~~~~~k~ilItGasggIG~~la~~l~-~~G~~V~~~~r~~~~   45 (264)
T PRK07576          5 FDFAGKNVVVVGGTSGINLGIAQAFA-RAGANVAVASRSQEK   45 (264)
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            3588999999988 899999999984 789999999987543

>PRK06349 homoserine dehydrogenase; Provisional

Probab=92.67  E-value=0.66  Score=47.47  Aligned_cols=108  Identities=14%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhc---------CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~---------fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (386)
                      .+|||+|+|.||+.+++.|.+.         .+.++. ++|++.....              +..........++++++.
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~--------------~~~~~~~~~~~d~~~ll~   69 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDR--------------GVDLPGILLTTDPEELVN   69 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhcc--------------CCCCcccceeCCHHHHhh
Confidence            4799999999999998876321         245644 4566543210              000011123468899985


Q ss_pred             --hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 016620          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (386)
Q Consensus       236 --~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~aL~~g~i  291 (386)
                        +.|+|+.+++.......+    ....++.|.-+|...-+.+ -.-+.|.++.++...
T Consensus        70 d~~iDvVve~tg~~~~~~~~----~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         70 DPDIDIVVELMGGIEPAREL----ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             CCCCCEEEECCCCchHHHHH----HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence              469999998753222221    2233455544443222222 233677777776554

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.57  E-value=0.36  Score=48.19  Aligned_cols=97  Identities=26%  Similarity=0.209  Sum_probs=57.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCCCcccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQPVTWK  225 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~~~~~~  225 (386)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-..  + +++           .+...+.+++... .....
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np-~v~v~  101 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNP-DVKVT  101 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCC-CcEEE
Confidence            5689999999999999999999985 5666 688887653110  0 000           0000011111110 01111


Q ss_pred             ----c--cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620          226 ----R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (386)
Q Consensus       226 ----~--~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~  260 (386)
                          .  ..+..++++.+|+|+.|+- +.+++.+++....+
T Consensus       102 ~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~  141 (355)
T PRK05597        102 VSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAAR  141 (355)
T ss_pred             EEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence                0  1234578899999999885 46778777765544

>cd08230 glucose_DH Glucose dehydrogenase

Probab=92.56  E-value=0.55  Score=46.29  Aligned_cols=96  Identities=17%  Similarity=0.212  Sum_probs=57.2

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHH--HhhhCC
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREAD  238 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e--ll~~aD  238 (386)
                      ..|.+|.|+|.|.||...++.+ +..|++|++.+++.  ..+.+ .       +++.+..... ....++.+  .....|
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~a-k~~G~~vi~~~~~~~~~~~~~-~-------~~~~Ga~~v~-~~~~~~~~~~~~~~~d  240 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLL-RLRGFEVYVLNRRDPPDPKAD-I-------VEELGATYVN-SSKTPVAEVKLVGEFD  240 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCCCHHHHH-H-------HHHcCCEEec-CCccchhhhhhcCCCC
Confidence            3688999999999999999875 78999999998742  11111 1       1112221110 00111111  123578


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|+-++... .   . -.+.++.++++..++.++.
T Consensus       241 ~vid~~g~~-~---~-~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         241 LIIEATGVP-P---L-AFEALPALAPNGVVILFGV  270 (355)
T ss_pred             EEEECcCCH-H---H-HHHHHHHccCCcEEEEEec
Confidence            888887531 1   1 2456777888887777654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=92.51  E-value=1.9  Score=42.02  Aligned_cols=73  Identities=21%  Similarity=0.319  Sum_probs=50.1

Q ss_pred             cCCCeEEEEe---cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       163 l~g~~vgIvG---~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      +.|.+|+|+|   +|+..++.++.| +.||++|..+.|..-...+...+.    +...+   ..+......+|.+.++|+
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~----l~~~~---~~~~~~~~~e~~i~~~DV  227 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEE----LEEKG---GVVVEHDSDEEVIEEADV  227 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHH----HhhcC---ceEEEecchhhhhccCCE
Confidence            8999999999   799999999998 689999999988543211111111    11111   123345566779999999


Q ss_pred             EEEc
Q 016620          240 ISLH  243 (386)
Q Consensus       240 Vvl~  243 (386)
                      +.+.
T Consensus       228 l~~l  231 (316)
T COG0540         228 LYML  231 (316)
T ss_pred             EEee
Confidence            9543

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=92.49  E-value=0.73  Score=45.71  Aligned_cols=75  Identities=12%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      .+.|.+|+++|=   +++..+.+..++.-+|++|.+..|..-...+.+.+.    ++..   +..+....+++|.+++||
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~ea~~~aD  228 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENA---GHKITITDQLEGNLDKAD  228 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHc---CCeEEEEcCHHHHHccCC
Confidence            589999999998   477888887654345999999887532111111111    1111   122334579999999999


Q ss_pred             EEEEc
Q 016620          239 VISLH  243 (386)
Q Consensus       239 iVvl~  243 (386)
                      +|..-
T Consensus       229 vvyt~  233 (338)
T PRK08192        229 ILYLT  233 (338)
T ss_pred             EEEEc
Confidence            99884

>PRK06128 oxidoreductase; Provisional

Probab=92.41  E-value=0.45  Score=45.84  Aligned_cols=36  Identities=25%  Similarity=0.226  Sum_probs=30.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      .+.||++.|.|. |.||+++|+.|+ ..|++|+...+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence            378999999986 999999999985 679998876544

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=92.39  E-value=0.65  Score=45.27  Aligned_cols=37  Identities=24%  Similarity=0.267  Sum_probs=31.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~  201 (386)
                      .|.+|.|+|.|.+|...++.+ +.+|++ |++.+++...
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~a-k~~G~~~vi~~~~~~~~  200 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLA-RALGAEDVIGVDPSPER  200 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHH
Confidence            489999999999999999985 789999 9998876543

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK15076 alpha-galactosidase; Provisional

Probab=92.37  E-value=0.49  Score=48.51  Aligned_cols=77  Identities=14%  Similarity=0.148  Sum_probs=47.0

Q ss_pred             CeEEEEecChhHHHHHH--HHH--hcC-CcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~--~L~--~~f-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      .+|+|||.|++|...+-  .++  +++ +.+|..+|.......  .....   ......+ .........++.+.++.||
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~---~~~~~~~-~~~~i~~ttD~~eal~dAD   77 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVAR---KLAESLG-ASAKITATTDRREALQGAD   77 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHH---HHHHhcC-CCeEEEEECCHHHHhCCCC
Confidence            47999999999955433  222  344 458999998765422  11111   1111111 2233444578889999999


Q ss_pred             EEEEccCC
Q 016620          239 VISLHPVL  246 (386)
Q Consensus       239 iVvl~lPl  246 (386)
                      +|+++.-.
T Consensus        78 fVv~ti~v   85 (431)
T PRK15076         78 YVINAIQV   85 (431)
T ss_pred             EEeEeeee
Confidence            99988654

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=92.37  E-value=0.57  Score=45.83  Aligned_cols=152  Identities=15%  Similarity=0.112  Sum_probs=77.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|.|+|.|.||.-++-+|+ ..|..|+.+-|...  .+++-.. +=.+...............-.+.+..+|+|++++-
T Consensus         1 mkI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~~--~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK   76 (307)
T COG1893           1 MKILILGAGAIGSLLGARLA-KAGHDVTLLVRSRR--LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK   76 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHH-hCCCeEEEEecHHH--HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence            47999999999999999985 56777887776553  1111110 00001111100001112233455678999999986


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc-ceEEeeccCCC-CCCCCCCCCCCCeEEcCCCCC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM-FRVGLDVFEDE-PYMKPGLSEMKNAIVVPHIAS  323 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i-~gaalDV~~~E-P~~~~~L~~~~nvilTPHia~  323 (386)
                      .. ++...+ +......++.++++-.--| +=+++.+-+.....++ .|...=....+ |- .-.......+.+.+..++
T Consensus        77 a~-q~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g-~v~~~g~g~~~ig~~~~~  152 (307)
T COG1893          77 AY-QLEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVLGGVTTHGAVREGPG-HVVHTGLGDTVIGELRGG  152 (307)
T ss_pred             cc-cHHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEEEEEeeeeeEecCCc-eEEEecCCcEEEccCCCC
Confidence            43 333332 4556667788766633222 2233455555544322 22222111112 21 111233556777777665


Q ss_pred             Cc
Q 016620          324 AS  325 (386)
Q Consensus       324 ~t  325 (386)
                      .+
T Consensus       153 ~~  154 (307)
T COG1893         153 RD  154 (307)
T ss_pred             ch
Confidence            54

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=92.36  E-value=0.22  Score=43.52  Aligned_cols=44  Identities=20%  Similarity=0.375  Sum_probs=31.5

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEc-CChhhHHHHHHhhh
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAY  210 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d-~~~~~~~~~~~~~~  210 (386)
                      +|||-|||+||+.+++.+...-.++|.+.+ +....+...+.-.|
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~Llky   46 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKY   46 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHE
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhc
Confidence            799999999999999987656778887774 44244444444334

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PTZ00325 malate dehydrogenase; Provisional

Probab=92.35  E-value=0.3  Score=48.13  Aligned_cols=77  Identities=25%  Similarity=0.311  Sum_probs=46.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHHhhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE  236 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~ell~~  236 (386)
                      -++.++|+|+|. |.||..+|..|+. +..-++..+|.....  ..-.+     +..... .......   .+..+.++.
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~--g~a~D-----l~~~~~-~~~v~~~td~~~~~~~l~g   76 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAP--GVAAD-----LSHIDT-PAKVTGYADGELWEKALRG   76 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCc--ccccc-----hhhcCc-CceEEEecCCCchHHHhCC
Confidence            356779999999 9999999988731 455689999983211  00001     111111 1112111   223678999


Q ss_pred             CCEEEEccCC
Q 016620          237 ADVISLHPVL  246 (386)
Q Consensus       237 aDiVvl~lPl  246 (386)
                      ||+|++++-.
T Consensus        77 aDvVVitaG~   86 (321)
T PTZ00325         77 ADLVLICAGV   86 (321)
T ss_pred             CCEEEECCCC
Confidence            9999988654

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=92.33  E-value=0.58  Score=45.85  Aligned_cols=100  Identities=23%  Similarity=0.315  Sum_probs=57.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--c-CCHHHHhhhCCEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~ell~~aDiV  240 (386)
                      ++|+|||. |.+|..+|-.|+. +.--++..+|.. ... ....+     +.... .......  . +++.+.+++||+|
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~-g~alD-----L~~~~-~~~~i~~~~~~~~~y~~~~daDiv   72 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTP-GVAAD-----LSHIN-TPAKVTGYLGPEELKKALKGADVV   72 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccc-eeehH-----hHhCC-CcceEEEecCCCchHHhcCCCCEE
Confidence            47999999 9999999987642 333479999986 211 11111     11111 1111221  1 3456778999999


Q ss_pred             EEccCC--Ch-hhhh-cc--cH-------HHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVL--DK-TTYH-LI--NK-------ERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPl--t~-~t~~-li--~~-------~~~~~mk~gailIN~aR  273 (386)
                      +++.-.  .+ +++. ++  |.       +.+..-.+.+++|+++-
T Consensus        73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtN  118 (310)
T cd01337          73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISN  118 (310)
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            988543  22 2221 21  11       23334468899999876

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=92.29  E-value=0.43  Score=46.78  Aligned_cols=78  Identities=18%  Similarity=0.151  Sum_probs=48.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .+|+|+|. |-.|+.+.++|..--..++.....+...                  .      ..+.++.++++|+|++|+
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~------------------~------~~~~~~~~~~~DvvFlal   58 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK------------------D------AAARRELLNAADVAILCL   58 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC------------------c------ccCchhhhcCCCEEEECC
Confidence            47999995 9999999999843223455544322111                  0      023345667899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      |.. ....+. .+.   .+.|+.+||.|
T Consensus        59 p~~-~s~~~~-~~~---~~~g~~VIDlS   81 (313)
T PRK11863         59 PDD-AAREAV-ALI---DNPATRVIDAS   81 (313)
T ss_pred             CHH-HHHHHH-HHH---HhCCCEEEECC
Confidence            953 222221 211   24688888887

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=92.22  E-value=0.26  Score=40.61  Aligned_cols=98  Identities=12%  Similarity=0.186  Sum_probs=55.1

Q ss_pred             ecChhHHHHHHHHHhc---CCcEEE-EEcCC--hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEEc
Q 016620          172 GAGRIGSAYARMMVEG---FKMNLI-YYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (386)
Q Consensus       172 G~G~IG~~iA~~L~~~---fg~~V~-~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl~  243 (386)
                      |+|.||+.+++.|.+.   +++++. +++++  .........              .......++++++.  ..|+|+=|
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~dvvVE~   66 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF--------------PDEAFTTDLEELIDDPDIDVVVEC   66 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH--------------THSCEESSHHHHHTHTT-SEEEE-
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc--------------ccccccCCHHHHhcCcCCCEEEEC
Confidence            8999999999988432   267755 44665  111111000              00123578999988  89999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc---CHHHHHHHHHc
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI---DEVALVEHLKQ  288 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v---de~aL~~aL~~  288 (386)
                      .+..+.+     +-....++.|.-+|-.+-+.+.   .-+.|.++.++
T Consensus        67 t~~~~~~-----~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~  109 (117)
T PF03447_consen   67 TSSEAVA-----EYYEKALERGKHVVTANKGALADEALYEELREAARK  109 (117)
T ss_dssp             SSCHHHH-----HHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHH
T ss_pred             CCchHHH-----HHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHH
Confidence            6643222     2234446688888888888877   33444444444

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=92.21  E-value=0.49  Score=44.50  Aligned_cols=35  Identities=23%  Similarity=0.112  Sum_probs=29.2

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcC
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDL  197 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~  197 (386)
                      ++.||++.|.|.   +.||+++|+.|+ ..|++|+...+
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la-~~G~~v~~~~~   40 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLH-AAGAELGITYL   40 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHH-HCCCEEEEEec
Confidence            368999999997   489999999985 68999876643

>PLN00106 malate dehydrogenase

Probab=92.19  E-value=0.31  Score=48.03  Aligned_cols=105  Identities=21%  Similarity=0.239  Sum_probs=60.1

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-Cccc-cccCCHHHHhhhCCE
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~aDi  239 (386)
                      ..++|+|+|. |.+|..+|..|+. ...-++..+|.....  ....+     +...... .... ....++.+.+++||+
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~--g~a~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi   89 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTP--GVAAD-----VSHINTPAQVRGFLGDDQLGDALKGADL   89 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCC--eeEch-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence            4469999999 9999999998742 444489999986511  00001     0111111 1111 123456788999999


Q ss_pred             EEEccCC--Ch-hhhh-cc------cHH---HHhcCCCCcEEEEcCCCc
Q 016620          240 ISLHPVL--DK-TTYH-LI------NKE---RLATMKKEAILVNCSRGP  275 (386)
Q Consensus       240 Vvl~lPl--t~-~t~~-li------~~~---~~~~mk~gailIN~aRg~  275 (386)
                      |+++.-.  .+ .++. ++      -.+   .+....+.+++++++-.-
T Consensus        90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            9888543  21 1221 11      112   233345788999987643

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=92.14  E-value=1  Score=46.45  Aligned_cols=109  Identities=19%  Similarity=0.132  Sum_probs=70.5

Q ss_pred             cCCCeEEEEec----ChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          163 LKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       163 l~g~~vgIvG~----G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      ++=++|.|||.    |.+|..+.+.| +..|+  +|+.++|....                 ..  +...+.+++++-..
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~-----------------i~--G~~~~~sl~~lp~~   64 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGE-----------------IL--GVKAYPSVLEIPDP   64 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCc-----------------cC--CccccCCHHHCCCC
Confidence            55678999999    88999999987 45554  89988886432                 11  12235688898888


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCC-CcEEEEcCCCcc-----cCHHHHHHHHHcCCcceE
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKK-EAILVNCSRGPV-----IDEVALVEHLKQNPMFRV  294 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~-gailIN~aRg~~-----vde~aL~~aL~~g~i~ga  294 (386)
                      .|++++++|. +.+...+ ++..+ .+- .++++..+-++.     -.++.|.+..+++.+.-.
T Consensus        65 ~Dlavi~vp~-~~~~~~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvl  125 (447)
T TIGR02717        65 VDLAVIVVPA-KYVPQVV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLL  125 (447)
T ss_pred             CCEEEEecCH-HHHHHHH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEE
Confidence            9999999994 2334443 33333 333 344444333332     236788888887765543

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=92.11  E-value=0.9  Score=43.66  Aligned_cols=36  Identities=17%  Similarity=0.163  Sum_probs=30.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      ++++.|+|.|..+++++..| ...|+ +|++++|+.+.
T Consensus       122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~  158 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKT  158 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH
Confidence            46899999999999999987 46787 59999998754

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=92.06  E-value=0.3  Score=45.10  Aligned_cols=72  Identities=18%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEEEEcc
Q 016620          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       168 vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      |.|+|. |.+|+++++.|. .-+.+|.+..|.......+.       ++..+..-.  ......+|.+.++.+|.|++++
T Consensus         1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~-------l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~   72 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQ-------LQALGAEVVEADYDDPESLVAALKGVDAVFSVT   72 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHH-------HHHTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred             CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhh-------hhcccceEeecccCCHHHHHHHHcCCceEEeec
Confidence            678986 999999999985 57888998888764432221       111221111  1112346777899999999999


Q ss_pred             CCC
Q 016620          245 VLD  247 (386)
Q Consensus       245 Plt  247 (386)
                      |..
T Consensus        73 ~~~   75 (233)
T PF05368_consen   73 PPS   75 (233)
T ss_dssp             SCS
T ss_pred             Ccc
Confidence            954

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=92.03  E-value=0.86  Score=45.23  Aligned_cols=96  Identities=16%  Similarity=0.208  Sum_probs=56.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc-cccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiVvl  242 (386)
                      .|.+|.|.|.|.+|...++.+ +.+|++|++.+.+...... .       .++.+...... .....+.++....|+|+-
T Consensus       183 ~g~~VlV~G~G~vG~~avq~A-k~~Ga~vi~~~~~~~~~~~-~-------~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid  253 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIG-KAFGLKVTVISSSSNKEDE-A-------INRLGADSFLVSTDPEKMKAAIGTMDYIID  253 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcchhhh-H-------HHhCCCcEEEcCCCHHHHHhhcCCCCEEEE
Confidence            688999999999999999984 8999999887765433211 0       11112110000 000122333334688887


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +... +.+   + .+.++.++++..++.++.
T Consensus       254 ~~g~-~~~---~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        254 TVSA-VHA---L-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             CCCC-HHH---H-HHHHHHhcCCcEEEEeCC
Confidence            7652 111   1 335667788888877754

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.96  E-value=0.35  Score=49.91  Aligned_cols=112  Identities=23%  Similarity=0.301  Sum_probs=66.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .|++|+|+|+|.-|.+.|+.| +. |++|+++|........ . ..    +..  . .  ... ....+.+.++|+|+..
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~~-~-~~----~~~--~-~--~~~-~~~~~~~~~~d~vV~S   70 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRDI-F-EE----LYS--K-N--AIA-ALSDSRWQNLDKIVLS   70 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchHH-H-Hh----hhc--C-c--eec-cCChhHhhCCCEEEEC
Confidence            578999999999999999998 45 9999999954332111 0 00    000  0 0  000 1113456789999887


Q ss_pred             cCCChhh----------hhcccHHHH--hcCCC-CcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          244 PVLDKTT----------YHLINKERL--ATMKK-EAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       244 lPlt~~t----------~~li~~~~~--~~mk~-gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      .-..+.+          ..++++-.|  ..+++ ..+-|--+.|+.--..-|...|+..
T Consensus        71 PgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  129 (454)
T PRK01368         71 PGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSN  129 (454)
T ss_pred             CCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhc
Confidence            5332221          124444322  33433 3555666778887777777777763

>cd08293 PTGR2 Prostaglandin reductase

Probab=91.89  E-value=0.96  Score=44.06  Aligned_cols=92  Identities=18%  Similarity=0.129  Sum_probs=55.7

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCccccccCCHHHHh-----hh
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVL-----RE  236 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell-----~~  236 (386)
                      |.+|.|.|. |.+|...++.+ +.+|+ +|++.+++.....  +       ++. .+..........++.+.+     ..
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlA-k~~G~~~Vi~~~~s~~~~~--~-------~~~~lGa~~vi~~~~~~~~~~i~~~~~~g  224 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIG-RLLGCSRVVGICGSDEKCQ--L-------LKSELGFDAAINYKTDNVAERLRELCPEG  224 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHH-HHcCCCEEEEEcCCHHHHH--H-------HHHhcCCcEEEECCCCCHHHHHHHHCCCC
Confidence            489999998 99999999974 89999 7999887654321  1       111 222111111112333322     24


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      .|+|+-++..    .. + .+.++.++++..+|.++
T Consensus       225 vd~vid~~g~----~~-~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         225 VDVYFDNVGG----EI-S-DTVISQMNENSHIILCG  254 (345)
T ss_pred             ceEEEECCCc----HH-H-HHHHHHhccCCEEEEEe
Confidence            6778776652    11 2 55677788888888775

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=91.86  E-value=0.76  Score=45.66  Aligned_cols=37  Identities=24%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      .|.+|.|.|.|.+|...++.+ +..|+ +|++.+++...
T Consensus       191 ~g~~VlV~G~G~vG~~a~~la-k~~G~~~Vi~~~~~~~r  228 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGA-VAAGASQVVAVDLNEDK  228 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCcEEEEcCCHHH
Confidence            578999999999999999874 78999 69988876644

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=91.80  E-value=0.38  Score=47.09  Aligned_cols=77  Identities=21%  Similarity=0.278  Sum_probs=43.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCc--EEEEEcCCh--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~--~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++|+|+|. |.+|..+|..|+ ..|.  +|+.+|+..  ........+.++... ..+.. .......+.+ .+++||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~-~~~~~-~~i~~~~d~~-~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDALA-AAGID-AEIKISSDLS-DVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhchh-ccCCC-cEEEECCCHH-HhCCCCEE
Confidence            47999998 999999999874 3343  699999843  111111111110000 00100 1121223444 58999999


Q ss_pred             EEccCC
Q 016620          241 SLHPVL  246 (386)
Q Consensus       241 vl~lPl  246 (386)
                      +++...
T Consensus        77 iitag~   82 (309)
T cd05294          77 IITAGV   82 (309)
T ss_pred             EEecCC
Confidence            999753

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=91.76  E-value=1.5  Score=44.65  Aligned_cols=116  Identities=18%  Similarity=0.210  Sum_probs=68.5

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPl  246 (386)
                      ++.|+|+|.+|.++|+.| +..|.+|.++|............    .++..  .+.......+ .+.+.++|+|+...-.
T Consensus         1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~--~gi~~~~g~~-~~~~~~~d~vv~sp~i   72 (433)
T TIGR01087         1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLN--EGSVLHTGLH-LEDLNNADLVVKSPGI   72 (433)
T ss_pred             CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhc--cCcEEEecCc-hHHhccCCEEEECCCC
Confidence            478999999999999998 68999999999765432111000    01100  1111111123 3556789998877533


Q ss_pred             Chhhh----------hcccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620          247 DKTTY----------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       247 t~~t~----------~li~~~-~~-~~mk~gailIN~aRg~~vde~aL~~aL~~g~  290 (386)
                      .+...          .++.+. .+ ..++...+-|.-+.|+.--..-|...|+...
T Consensus        73 ~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        73 PPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             CCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            22211          234333 22 3344456778888899877777777777643

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=91.75  E-value=0.42  Score=53.98  Aligned_cols=106  Identities=10%  Similarity=0.133  Sum_probs=64.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHH--h--------hhh------hhhhhcC---CCCc-c
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV--T--------AYG------QFLKANG---EQPV-T  223 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~--~--------~~~------~~~~~~~---~~~~-~  223 (386)
                      .-.+|.|+|.|.+|+..++.+ .++|++ . .++..-..+....  .        .|.      ....+.+   .... .
T Consensus       202 ~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~~~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f~~~~  278 (1042)
T PLN02819        202 CPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEPSKLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQFDKAD  278 (1042)
T ss_pred             CCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCHHHHHHHHHhhcCCccccccceeeeeecChHHHhhccCCccccchhh
Confidence            346799999999999999986 788888 2 3332222121100  0        000      0000000   0000 0


Q ss_pred             c-----cccCC-HHHHhhhCCEEEEccCCChhhhhcccHH-HHhcCCCCc----EEEEcC
Q 016620          224 W-----KRASS-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS  272 (386)
Q Consensus       224 ~-----~~~~~-l~ell~~aDiVvl~lPlt~~t~~li~~~-~~~~mk~ga----ilIN~a  272 (386)
                      +     .+... +++.+..+|+|+.|+-..+.+-.++.++ ..+.||+|+    +++|++
T Consensus       279 y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs  338 (1042)
T PLN02819        279 YYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDIT  338 (1042)
T ss_pred             hccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEc
Confidence            0     00011 3578889999999997777788899988 777899998    888875

>PRK05442 malate dehydrogenase; Provisional

Probab=91.71  E-value=0.58  Score=46.19  Aligned_cols=75  Identities=17%  Similarity=0.100  Sum_probs=42.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-cCCc-----EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 016620          166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~-~fg~-----~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~  235 (386)
                      .+|+|+|. |.+|..+|-.|.. +.--     ++..+|.....  ......+.     .... ..........+..+.++
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl-----~~~~~~~~~~~~i~~~~y~~~~   79 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMEL-----DDCAFPLLAGVVITDDPNVAFK   79 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhh-----hhhhhhhcCCcEEecChHHHhC
Confidence            38999998 9999999976542 2222     78999974321  11111111     1110 00001111235567789


Q ss_pred             hCCEEEEccC
Q 016620          236 EADVISLHPV  245 (386)
Q Consensus       236 ~aDiVvl~lP  245 (386)
                      +||+|+++.-
T Consensus        80 daDiVVitaG   89 (326)
T PRK05442         80 DADVALLVGA   89 (326)
T ss_pred             CCCEEEEeCC
Confidence            9999988754

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=91.63  E-value=1.6  Score=44.83  Aligned_cols=112  Identities=14%  Similarity=0.115  Sum_probs=62.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhc--CC------cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEG--FK------MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~--fg------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      -+|+|+|. |.+|..+|-.|+..  ||      -+++.+|...+.....-++..+...    ..........+-.+.+++
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~----~~~~~v~i~~~~ye~~kd  176 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLY----PLLREVSIGIDPYEVFQD  176 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhh----hhcCceEEecCCHHHhCc
Confidence            47999999 99999999876432  22      3788889876653333333211110    000111112344577899


Q ss_pred             CCEEEEccCC--Ch-hhh--------hcccH--HHHhc-CCCCcEEEEcCCCcccCHHHHH
Q 016620          237 ADVISLHPVL--DK-TTY--------HLINK--ERLAT-MKKEAILVNCSRGPVIDEVALV  283 (386)
Q Consensus       237 aDiVvl~lPl--t~-~t~--------~li~~--~~~~~-mk~gailIN~aRg~~vde~aL~  283 (386)
                      ||+|++..-.  .+ .++        .++.+  +.+.. ..+.+++|.++  ..+|.-..+
T Consensus       177 aDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v  235 (444)
T PLN00112        177 AEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALI  235 (444)
T ss_pred             CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHH
Confidence            9999998643  22 122        11211  23334 46788888776  444444443

>PLN02214 cinnamoyl-CoA reductase

Probab=91.42  E-value=0.49  Score=46.65  Aligned_cols=83  Identities=12%  Similarity=-0.016  Sum_probs=48.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.+++|.|.|. |-||+.+++.| ..-|.+|.+.+|...............................+++++++.+|+|
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            367899999997 99999999998 4678999998876542111100000000000000000111234567788899998


Q ss_pred             EEccC
Q 016620          241 SLHPV  245 (386)
Q Consensus       241 vl~lP  245 (386)
                      +.+..
T Consensus        86 ih~A~   90 (342)
T PLN02214         86 FHTAS   90 (342)
T ss_pred             EEecC
Confidence            77764

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.40  E-value=0.66  Score=44.22  Aligned_cols=36  Identities=19%  Similarity=0.273  Sum_probs=31.1

Q ss_pred             cCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       163 l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +.||++.|.|.+   .||+++|+.|+ ..|++|+..+++.
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la-~~G~~Vil~~r~~   41 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACF-EQGAELAFTYLNE   41 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEEecCH
Confidence            578999999984   79999999985 6899999888764

>PRK07411 hypothetical protein; Validated

Probab=91.39  E-value=0.49  Score=47.85  Aligned_cols=101  Identities=17%  Similarity=0.142  Sum_probs=60.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HHH-----------HhhhhhhhhhcCCCCcccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EKF-----------VTAYGQFLKANGEQPVTWK  225 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~~-----------~~~~~~~~~~~~~~~~~~~  225 (386)
                      ..|...+|+|+|+|.+|..+|+.|+ ..|. ++..+|...-..  + +++           .+...+.+++... .....
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np-~v~v~  111 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINP-YCQVD  111 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCC-CCeEE
Confidence            4689999999999999999999985 5565 677887543210  0 000           0000111111110 01111


Q ss_pred             ------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCC
Q 016620          226 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK  264 (386)
Q Consensus       226 ------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~  264 (386)
                            ...+..++++.+|+|+.|+- +.+++.++++.....-+|
T Consensus       112 ~~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        112 LYETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             EEecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence                  11234578899999988875 567888888776654443

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=91.39  E-value=0.31  Score=49.48  Aligned_cols=45  Identities=20%  Similarity=0.424  Sum_probs=31.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAY  210 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~  210 (386)
                      .+|||.|||+||+.++|.+...++++|++ .|+......-.|.-.|
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllky  131 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKY  131 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhh
Confidence            48999999999999999852247899888 5655444333444333

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.37  E-value=2  Score=44.07  Aligned_cols=115  Identities=19%  Similarity=0.136  Sum_probs=67.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiVvl  242 (386)
                      .+-+|+|+|+|.+|.++|+.| ...|.+|.++|..........       ++... .+..... ..+ .+.+.++|+|+.
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~-------l~~~~-~g~~~~~~~~~-~~~~~~~d~vV~   74 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDT-------LAREF-PDVELRCGGFD-CELLVQASEIII   74 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHH-------HHhhc-CCcEEEeCCCC-hHHhcCCCEEEE
Confidence            345799999999999999987 689999999997643211110       11100 0111111 112 345678999887


Q ss_pred             ccCCChhhh----------hcccHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          243 HPVLDKTTY----------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       243 ~lPlt~~t~----------~li~~~-~~-~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      ..-..++..          .++.+- .+ ..++...+-|--+.|+.--..-+...|+.
T Consensus        75 sp~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~  132 (448)
T PRK03803         75 SPGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA  132 (448)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            753322211          234332 33 23444456677778887767777777765

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=91.26  E-value=0.46  Score=47.08  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=29.6

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      +|||||-|..|+.+++.+ +.+|.+|+++|+++.
T Consensus         1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~   33 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDAN   33 (352)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCC
Confidence            599999999999999985 789999999998754

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=91.16  E-value=0.54  Score=46.47  Aligned_cols=91  Identities=14%  Similarity=0.178  Sum_probs=50.0

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~~fg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      +++|+|+|. |.+|+.+.+.|+ ..+.   ++.+..+......         .+.-.+ ....... .+. +.+..+|+|
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~-~~~hp~~~l~~l~s~~~~g~---------~l~~~g-~~i~v~d-~~~-~~~~~vDvV   67 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILE-ERNFPVDKLRLLASARSAGK---------ELSFKG-KELKVED-LTT-FDFSGVDIA   67 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHH-hCCCCcceEEEEEccccCCC---------eeeeCC-ceeEEee-CCH-HHHcCCCEE
Confidence            468999998 999999999984 5322   4455543321100         010001 1111111 122 334789999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +.|+|.. .+..+. .+.   .+.|+++||.|.
T Consensus        68 f~A~g~g-~s~~~~-~~~---~~~G~~VIDlS~   95 (334)
T PRK14874         68 LFSAGGS-VSKKYA-PKA---AAAGAVVIDNSS   95 (334)
T ss_pred             EECCChH-HHHHHH-HHH---HhCCCEEEECCc
Confidence            9999853 223322 222   356889998774

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=91.15  E-value=0.61  Score=45.95  Aligned_cols=74  Identities=18%  Similarity=0.151  Sum_probs=43.4

Q ss_pred             eEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCChhh--HHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhh
Q 016620          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT--RLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLR  235 (386)
Q Consensus       167 ~vgIvG~-G~IG~~iA~~L~~~fg~-------~V~~~d~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~  235 (386)
                      +|+|||. |.+|..+|-.|. ..+.       ++..+|.....  ....-.+.     .... ..........+..+.++
T Consensus         5 KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl-----~~~~~~~~~~~~i~~~~~~~~~   78 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAMEL-----EDCAFPLLAGVVATTDPEEAFK   78 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHHHH-----hhccccccCCcEEecChHHHhC
Confidence            7999998 999999998763 3343       79999985321  11111111     1111 00001111245567889


Q ss_pred             hCCEEEEccCC
Q 016620          236 EADVISLHPVL  246 (386)
Q Consensus       236 ~aDiVvl~lPl  246 (386)
                      +||+|+++.-.
T Consensus        79 daDvVVitAG~   89 (323)
T TIGR01759        79 DVDAALLVGAF   89 (323)
T ss_pred             CCCEEEEeCCC
Confidence            99999988643

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.14  E-value=1.3  Score=43.14  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=31.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .|.+|.|.|.|.+|+.+++.+ +..|++|++.+++..
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a-~~~G~~vi~~~~~~~  198 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYA-AKMGFRTVAISRGSD  198 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCChH
Confidence            578999999999999999985 899999999987643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=91.13  E-value=1.2  Score=44.00  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~  201 (386)
                      .|++|.|.|.|.+|...++.+ +.+|++ |++.+++...
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~a-k~~G~~~Vi~~~~~~~~  213 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGA-ALAGASKIIAVDIDDRK  213 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            588999999999999999974 789985 8888876543

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=91.08  E-value=0.74  Score=44.59  Aligned_cols=87  Identities=13%  Similarity=0.062  Sum_probs=51.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .|+++.|+|.|.||...++.+ +.+|++ |.+.|+.... ++.           ++...  .  ...-++.-...|+|+-
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~a-k~~G~~~v~~~~~~~~r-l~~-----------a~~~~--~--i~~~~~~~~g~Dvvid  206 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLT-KAAGGSPPAVWETNPRR-RDG-----------ATGYE--V--LDPEKDPRRDYRAIYD  206 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHH-HHh-----------hhhcc--c--cChhhccCCCCCEEEE
Confidence            577899999999999999875 789997 5556664432 111           11100  0  0110111134688887


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +.... .+   + ...++.++++..++.+|
T Consensus       207 ~~G~~-~~---~-~~~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       207 ASGDP-SL---I-DTLVRRLAKGGEIVLAG  231 (308)
T ss_pred             CCCCH-HH---H-HHHHHhhhcCcEEEEEe
Confidence            76531 11   1 44567788888887765

>PRK07877 hypothetical protein; Provisional

Probab=91.00  E-value=0.81  Score=49.87  Aligned_cols=98  Identities=18%  Similarity=0.146  Sum_probs=59.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhh-----HH----H----HHHhhhhhhhhhcC-CCCccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQAT-----RL----E----KFVTAYGQFLKANG-EQPVTW  224 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~-----~~----~----~~~~~~~~~~~~~~-~~~~~~  224 (386)
                      ..|++++|+|+|+| +|..+|..|+ ..|  -++..+|...-+     +.    .    ...+...+.+.+.. ...+..
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~  180 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV  180 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence            45899999999999 9999999986 455  377777743211     00    0    00000001111111 001110


Q ss_pred             c----ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          225 K----RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       225 ~----~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      .    ...+++++++++|+|+-|+. +-+++.++++....+
T Consensus       181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence            0    12367888999999999997 468899998776654

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=91.00  E-value=1  Score=43.94  Aligned_cols=96  Identities=16%  Similarity=0.166  Sum_probs=56.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiVv  241 (386)
                      -.|.++.|.|.|.+|+.+++.+ +.+|++|++.+++.....  +..       ..+..........+ ..+.-...|+|+
T Consensus       168 ~~g~~vlV~g~g~vG~~~~~~a-~~~G~~v~~~~~~~~~~~--~~~-------~~g~~~vi~~~~~~~~~~~~~~~d~v~  237 (337)
T cd05283         168 GPGKRVGVVGIGGLGHLAVKFA-KALGAEVTAFSRSPSKKE--DAL-------KLGADEFIATKDPEAMKKAAGSLDLII  237 (337)
T ss_pred             CCCCEEEEECCcHHHHHHHHHH-HHcCCeEEEEcCCHHHHH--HHH-------HcCCcEEecCcchhhhhhccCCceEEE
Confidence            3577999999999999999885 789999999987654321  111       11111000000001 112234567777


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|.+..     ....+.++.++++..+++++.
T Consensus       238 ~~~g~~-----~~~~~~~~~l~~~G~~v~~g~  264 (337)
T cd05283         238 DTVSAS-----HDLDPYLSLLKPGGTLVLVGA  264 (337)
T ss_pred             ECCCCc-----chHHHHHHHhcCCCEEEEEec
Confidence            776642     112455666777777777654

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=90.97  E-value=0.53  Score=46.42  Aligned_cols=75  Identities=24%  Similarity=0.188  Sum_probs=42.2

Q ss_pred             eEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCChhhH-HHH-HHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQATR-LEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       167 ~vgIvG~-G~IG~~iA~~L~~~fg~-------~V~~~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      +|+|+|. |.+|..+|..|. ..+.       ++..+|...... ... ..+..    +.............+..+.+++
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~-~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~----d~~~~~~~~~~~~~~~~~~~~~   75 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIA-RGRMLGKDQPIILHLLDIPPAMKVLEGVVMELM----DCAFPLLDGVVPTHDPAVAFTD   75 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHH-hccccCCCCccEEEEEecCCcccccceeEeehh----cccchhcCceeccCChHHHhCC
Confidence            5899999 999999998874 3222       588999754321 100 00100    0000000111112255678899


Q ss_pred             CCEEEEccCC
Q 016620          237 ADVISLHPVL  246 (386)
Q Consensus       237 aDiVvl~lPl  246 (386)
                      ||+|+++.-.
T Consensus        76 aDiVVitAG~   85 (324)
T TIGR01758        76 VDVAILVGAF   85 (324)
T ss_pred             CCEEEEcCCC
Confidence            9999987543

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>cd00704 MDH Malate dehydrogenase

Probab=90.93  E-value=1.3  Score=43.69  Aligned_cols=109  Identities=19%  Similarity=0.181  Sum_probs=57.8

Q ss_pred             eEEEEec-ChhHHHHHHHHHh-cC-Cc----EEEEEcCCh--hhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhh
Q 016620          167 TVGVIGA-GRIGSAYARMMVE-GF-KM----NLIYYDLYQ--ATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       167 ~vgIvG~-G~IG~~iA~~L~~-~f-g~----~V~~~d~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~  236 (386)
                      +|+|+|. |.||..+|..|+. +. +.    ++..+|...  ........+     +.... ..........+..+.+++
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~D-----l~d~~~~~~~~~~i~~~~~~~~~~   76 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVME-----LQDCAFPLLKGVVITTDPEEAFKD   76 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeee-----hhhhcccccCCcEEecChHHHhCC
Confidence            7999999 9999999988742 11 11    588999865  211000000     00000 000001112456788999


Q ss_pred             CCEEEEccCC--Ch-hhhh-cc--c----H---HHHhcC-CCCcEEEEcCCCcccCHHHH
Q 016620          237 ADVISLHPVL--DK-TTYH-LI--N----K---ERLATM-KKEAILVNCSRGPVIDEVAL  282 (386)
Q Consensus       237 aDiVvl~lPl--t~-~t~~-li--~----~---~~~~~m-k~gailIN~aRg~~vde~aL  282 (386)
                      ||+|+++.-.  .+ +|+. ++  |    +   ..+... ++.+++|.++  ..+|.-+-
T Consensus        77 aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~  134 (323)
T cd00704          77 VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNAL  134 (323)
T ss_pred             CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHHH
Confidence            9999887533  22 1221 11  1    1   123334 5788888875  45554443

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=90.92  E-value=0.71  Score=49.13  Aligned_cols=38  Identities=18%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ....++|||||-|..|+.+++.+ +.+|.+|+++|+.+.
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA-~~lG~~Vi~ld~~~~   56 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAA-SQMGIKVKVLDPLED   56 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCC
Confidence            47889999999999999999985 789999999998764

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=90.87  E-value=1.1  Score=44.05  Aligned_cols=37  Identities=27%  Similarity=0.417  Sum_probs=32.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|.+|.|+|.|.||...++.+ +..|.+|++.+++...
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a-~~~G~~vi~~~~~~~~  202 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTA-KAMGAAVVAIDIDPEK  202 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHH
Confidence            588999999999999999985 7899999999876643

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=90.83  E-value=1.4  Score=42.69  Aligned_cols=94  Identities=20%  Similarity=0.146  Sum_probs=56.8

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHHHhh-----h
Q 016620          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLR-----E  236 (386)
Q Consensus       164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~-----~  236 (386)
                      .|.+|.|.| .|.+|...++.+ +..|++|++.+++.+..  ++       +++.+......... .++.+.+.     .
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlA-k~~G~~Vi~~~~s~~~~--~~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~g  207 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKV--AY-------LKKLGFDVAFNYKTVKSLEETLKKASPDG  207 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH--HH-------HHHcCCCEEEeccccccHHHHHHHhCCCC
Confidence            578999999 499999999975 89999999888765432  11       12222211111011 12333221     3


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+-+...    .. + ...++.++++..++..+.
T Consensus       208 vdvv~d~~G~----~~-~-~~~~~~l~~~G~iv~~G~  238 (325)
T TIGR02825       208 YDCYFDNVGG----EF-S-NTVIGQMKKFGRIAICGA  238 (325)
T ss_pred             eEEEEECCCH----HH-H-HHHHHHhCcCcEEEEecc
Confidence            5777766642    11 2 556777888888888764

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=90.78  E-value=0.82  Score=41.30  Aligned_cols=118  Identities=17%  Similarity=0.212  Sum_probs=66.3

Q ss_pred             eEEEEecChhHHH--HHHHHH--hcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          167 TVGVIGAGRIGSA--YARMMV--EGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       167 ~vgIvG~G~IG~~--iA~~L~--~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +|+|||.|+.--.  +...+.  ..+. .++..+|.+.+. ++. ...+.+...+....+..+....+.+|+++.||+|+
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~R-L~~-~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi   78 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEER-LEI-VERLARRMVEEAGADLKVEATTDRREALEGADFVI   78 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHH-HHH-HHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEE
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHH-HHH-HHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEE
Confidence            5899999987554  222222  2444 379999998743 221 11222222223334455666789999999999999


Q ss_pred             EccCCChhh-----------hhccc------------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620          242 LHPVLDKTT-----------YHLIN------------------------KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (386)
Q Consensus       242 l~lPlt~~t-----------~~li~------------------------~~~~~~mk~gailIN~aRg~~vde~aL~~aL  286 (386)
                      ++.-....-           +++..                        .+.+....|+|.++|.+-..-+-..++.+..
T Consensus        79 ~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~~r~~  158 (183)
T PF02056_consen   79 NQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEALSRYT  158 (183)
T ss_dssp             E---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHHHHHS
T ss_pred             EEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHHHHhC
Confidence            987543210           11111                        1224445689999999887766666665444

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.77  E-value=1.5  Score=41.80  Aligned_cols=36  Identities=28%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA  200 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~  200 (386)
                      .|.+|.|+|.|.||...++.+ +.+|++ |++.+++..
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~a-k~~G~~~Vi~~~~~~~  156 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAA-AAAGAARVVAADPSPD  156 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHH
Confidence            688999999999999999985 789997 888876554

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=90.67  E-value=0.5  Score=46.26  Aligned_cols=78  Identities=23%  Similarity=0.330  Sum_probs=45.9

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCcccc-cc-CCHHHHhhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RA-SSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-~~l~ell~~aDiVv  241 (386)
                      ++|+|+|.|.||+++|-+|. +.++-++..||.......-.-.+     +.... ....... .. .+ .+.++.||+|+
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D-----L~~~~~~~~~~~~i~~~~~-y~~~~~aDiVv   74 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD-----LSHAAAPLGSDVKITGDGD-YEDLKGADIVV   74 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc-----hhhcchhccCceEEecCCC-hhhhcCCCEEE
Confidence            47999999999999998764 35666899999873321111111     11111 0101111 11 12 45678999999


Q ss_pred             Ecc--CCChh
Q 016620          242 LHP--VLDKT  249 (386)
Q Consensus       242 l~l--Plt~~  249 (386)
                      ++.  |.-|.
T Consensus        75 itAG~prKpG   84 (313)
T COG0039          75 ITAGVPRKPG   84 (313)
T ss_pred             EeCCCCCCCC
Confidence            987  55543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=90.63  E-value=2.2  Score=41.33  Aligned_cols=107  Identities=15%  Similarity=0.118  Sum_probs=68.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      |++++|||--.=-..+++.| ...|++|..|.-....               .+..  +.....+.++.++++|+|++=+
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~---------------~~~~--~~~~~~~~~~~~~~~~~~i~p~   62 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLE---------------DGFT--GAVKCELLELDLTTLDVVILPV   62 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEeccccc---------------cccc--cceeecchhhhhccCCEEEECC
Confidence            67899999877777899998 5789887776532110               0001  2223345566689999999999


Q ss_pred             CCChhhh----------hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016620          245 VLDKTTY----------HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (386)
Q Consensus       245 Plt~~t~----------~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga  294 (386)
                      |.+.+..          -.++++.++.|+++++ +-+|.    +..+|-++.++..+.-.
T Consensus        63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G~----~~~~l~~~a~~~gi~v~  117 (287)
T TIGR02853        63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVGI----SNPYLEQLAADAGVKLI  117 (287)
T ss_pred             ccccCCceEecccccCCccccHHHHHhcCCCCE-EEEec----CCHHHHHHHHHCCCeEE
Confidence            9766532          1257889999998655 44443    33455555555544443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK12742 oxidoreductase; Provisional

Probab=90.63  E-value=1.4  Score=40.20  Aligned_cols=36  Identities=25%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      .+.|+++.|.|. |.||+.+|+.| ...|++|+...++
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~   39 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG   39 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence            367899999996 89999999998 4789998876553

>PRK06114 short chain dehydrogenase; Provisional

Probab=90.61  E-value=0.52  Score=43.95  Aligned_cols=38  Identities=29%  Similarity=0.305  Sum_probs=32.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+.|+++.|.|. |.||+.+|+.|+ ..|++|+..+++..
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~-~~G~~v~~~~r~~~   43 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLA-QAGADVALFDLRTD   43 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            478999999975 799999999984 78999999988654

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.57  E-value=0.84  Score=46.58  Aligned_cols=114  Identities=19%  Similarity=0.167  Sum_probs=65.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      +.+++|.|+|+|..|.+.++.| +..|.+|.++|..........       +. .+   ..........+.+...|+|+.
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~-------l~-~g---~~~~~~~~~~~~~~~~d~vv~   71 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDK-------LP-EN---VERHTGSLNDEWLLAADLIVA   71 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHH-------Hh-cC---CEEEeCCCCHHHhcCCCEEEE
Confidence            5688999999999999999887 688999999997543211000       11 11   111111112244567887666


Q ss_pred             ccCCChhhh----------hcccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          243 HPVLDKTTY----------HLINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       243 ~lPlt~~t~----------~li~~-~~~~~-mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      ..-..++..          .++.+ +.+.. ++...+-|--+.|+.--..-|...|+.
T Consensus        72 spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         72 SPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             CCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            542222211          12333 33333 333455577777887666667777764

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=90.49  E-value=1.3  Score=43.76  Aligned_cols=97  Identities=18%  Similarity=0.174  Sum_probs=58.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiVv  241 (386)
                      ..|.+|.|.|.|.+|...++.+ +..|++|++.+++...... .       .+..+....... ....+.+.....|+|+
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~A-k~~G~~vi~~~~~~~~~~~-~-------~~~~Ga~~~i~~~~~~~~~~~~~~~D~vi  249 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSDKKREE-A-------LEHLGADDYLVSSDAAEMQEAADSLDYII  249 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH-H-------HHhcCCcEEecCCChHHHHHhcCCCcEEE
Confidence            3678999999999999999874 8999999888776543211 1       111122110000 0011223334568888


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      -++.... +    -...++.++++..++.++.
T Consensus       250 d~~g~~~-~----~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        250 DTVPVFH-P----LEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             ECCCchH-H----HHHHHHHhccCCEEEEECC
Confidence            8876321 1    1345677888888888764

>PRK08324 short chain dehydrogenase; Validated

Probab=90.46  E-value=0.72  Score=50.05  Aligned_cols=40  Identities=30%  Similarity=0.373  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ..+.|+++.|.| .|.||+.+|+.| ...|++|+..+++...
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA  458 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence            457899999999 599999999998 4779999999987654

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=90.42  E-value=1.1  Score=43.19  Aligned_cols=98  Identities=13%  Similarity=0.086  Sum_probs=58.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH--HH--hhhC
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EV--LREA  237 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--el--l~~a  237 (386)
                      ..|.+|.|+|.|.+|+.+++.+ ++.|++ |++.+++.....  +..       +.+..........+..  ..  -...
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la-~~~G~~~v~~~~~~~~~~~--~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~v  227 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLL-KLNGASRVTVAEPNEEKLE--LAK-------KLGATETVDPSREDPEAQKEDNPYGF  227 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHHH--HHH-------HhCCeEEecCCCCCHHHHHHhcCCCC
Confidence            3578999999999999999985 799998 788877654321  111       1111100000001111  11  2357


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |+++-+.+...     ...+.++.|+++..++.++..+
T Consensus       228 d~v~~~~~~~~-----~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         228 DVVIEATGVPK-----TLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             cEEEECCCChH-----HHHHHHHHHhcCCEEEEEecCC
Confidence            88887765311     2245567788888888887644

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=90.35  E-value=1.1  Score=44.79  Aligned_cols=96  Identities=17%  Similarity=0.225  Sum_probs=55.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc-cccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~~aDiVvl  242 (386)
                      .|.+|.|.|.|.+|...++. ++.+|++|++.+++.+.+.+ +       .+..+...... .....+.+.....|+|+-
T Consensus       178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~~~~~-~-------a~~lGa~~~i~~~~~~~v~~~~~~~D~vid  248 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSEKERE-A-------IDRLGADSFLVTTDSQKMKEAVGTMDFIID  248 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChHHhHH-H-------HHhCCCcEEEcCcCHHHHHHhhCCCcEEEE
Confidence            68899999999999999998 48999999988876433211 1       11112111000 000012222334688877


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +.... .+   + ...++.++++..++.++-
T Consensus       249 ~~G~~-~~---~-~~~~~~l~~~G~iv~vG~  274 (375)
T PLN02178        249 TVSAE-HA---L-LPLFSLLKVSGKLVALGL  274 (375)
T ss_pred             CCCcH-HH---H-HHHHHhhcCCCEEEEEcc
Confidence            76421 11   1 334566777777777653

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=90.23  E-value=2.3  Score=42.20  Aligned_cols=95  Identities=22%  Similarity=0.171  Sum_probs=56.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC-C----HHHHh--hh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-S----MDEVL--RE  236 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----l~ell--~~  236 (386)
                      +.+|.|+|.|.||...+..+ +.+|+ +|++.|++..+..-.         +............. +    ..++-  ..
T Consensus       169 ~~~V~V~GaGpIGLla~~~a-~~~Ga~~Viv~d~~~~Rl~~A---------~~~~g~~~~~~~~~~~~~~~~~~~t~g~g  238 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALA-KLLGASVVIVVDRSPERLELA---------KEAGGADVVVNPSEDDAGAEILELTGGRG  238 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHcCCceEEEeCCCHHHHHHH---------HHhCCCeEeecCccccHHHHHHHHhCCCC
Confidence            33999999999999988874 78886 677878876542111         11011110010001 1    11222  24


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      +|+++-|... +.+    -.+.+...+++..++.+|-.
T Consensus       239 ~D~vie~~G~-~~~----~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         239 ADVVIEAVGS-PPA----LDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCEEEECCCC-HHH----HHHHHHHhcCCCEEEEEecc
Confidence            8999999872 221    24567778888888777654

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=90.21  E-value=1.9  Score=42.35  Aligned_cols=93  Identities=14%  Similarity=0.118  Sum_probs=53.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .|.+|.|+|.|.||...++.+++.+ +.+|++.+++..+...         .+..+..    ....++.+-. ..|+|+-
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~---------a~~~~~~----~~~~~~~~~~-g~d~viD  228 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDL---------FSFADET----YLIDDIPEDL-AVDHAFE  228 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHH---------HhhcCce----eehhhhhhcc-CCcEEEE
Confidence            5889999999999999888653235 4689999987543211         1111110    0011111111 3688887


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +.... .+...+ .+.++.++++..++.++
T Consensus       229 ~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G  256 (341)
T cd08237         229 CVGGR-GSQSAI-NQIIDYIRPQGTIGLMG  256 (341)
T ss_pred             CCCCC-ccHHHH-HHHHHhCcCCcEEEEEe
Confidence            77631 011112 44677788888887765

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=90.17  E-value=0.45  Score=36.38  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=29.3

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      +|.|||-|.+|-.+|..| +.+|.+|+.+++...
T Consensus         1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence            588999999999999998 589999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=90.16  E-value=0.57  Score=42.36  Aligned_cols=67  Identities=15%  Similarity=0.272  Sum_probs=44.9

Q ss_pred             eEEEEecChhHHHHHHH-HHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~-L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      ++.|||.|++|++++.. ..+..||++. +||..+..-           ....+  +......+++++.++  +.|+.++
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V-----------G~~~~--~v~V~~~d~le~~v~~~dv~iaiL  152 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV-----------GTKIG--DVPVYDLDDLEKFVKKNDVEIAIL  152 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh-----------CcccC--CeeeechHHHHHHHHhcCccEEEE
Confidence            58999999999999953 2246788855 677665421           01111  233445567888887  5677899


Q ss_pred             ccCC
Q 016620          243 HPVL  246 (386)
Q Consensus       243 ~lPl  246 (386)
                      |+|.
T Consensus       153 tVPa  156 (211)
T COG2344         153 TVPA  156 (211)
T ss_pred             EccH
Confidence            9995

>PRK07904 short chain dehydrogenase; Provisional

Probab=90.09  E-value=1.1  Score=42.01  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=29.8

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .++++.|.|. |.||+++|+.|++.-|++|+..+|+...
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~   45 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDP   45 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcch
Confidence            4678888876 8999999998753325899999887654

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=90.08  E-value=0.95  Score=42.10  Aligned_cols=39  Identities=26%  Similarity=0.199  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .+.|+++.|.|. |.||+.+|+.|+ ..|++|+..+|+...
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~~   46 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPAK   46 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            478999999986 999999999985 679999999987643

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=90.06  E-value=1.1  Score=44.50  Aligned_cols=89  Identities=16%  Similarity=0.275  Sum_probs=49.7

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhc--C-CcEEEEEcC--ChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEG--F-KMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~--f-g~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      ...+|+|+|. |.+|+.+.+.|. .  + ..++.+...  +....           ....+ ...... ..+. +.+..+
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~-~~~hP~~~l~~las~rsaGk~-----------~~~~~-~~~~v~-~~~~-~~~~~~   70 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLT-DRDFPYSSLKMLASARSAGKK-----------VTFEG-RDYTVE-ELTE-DSFDGV   70 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHH-hCCCCcceEEEEEccCCCCCe-----------eeecC-ceeEEE-eCCH-HHHcCC
Confidence            4568999998 999999999984 4  3 224433322  21111           01111 111111 1122 445889


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      |+|++|+|.. ....+. .+.   .+.|+.+||.|
T Consensus        71 D~vf~a~p~~-~s~~~~-~~~---~~~g~~VIDlS  100 (344)
T PLN02383         71 DIALFSAGGS-ISKKFG-PIA---VDKGAVVVDNS  100 (344)
T ss_pred             CEEEECCCcH-HHHHHH-HHH---HhCCCEEEECC
Confidence            9999999963 223222 111   24688999988

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=90.03  E-value=0.77  Score=48.00  Aligned_cols=134  Identities=14%  Similarity=0.141  Sum_probs=88.9

Q ss_pred             cccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~I-G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      ..+.|++..|+|=-.| |..++..| +-....|..+...                            ..++.|.+.++|+
T Consensus       158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHSK----------------------------T~~lae~v~~ADI  208 (935)
T KOG4230|consen  158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHSK----------------------------TRNLAEKVSRADI  208 (935)
T ss_pred             CccccceeEEEecccccCChHHHHH-HhcCceEEEecCC----------------------------CccHHHHhccCCE
Confidence            4689999999998765 88899887 5678888876432                            2478888999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc--eEEeeccCCCCCCCCCCCCCCCeEE
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF--RVGLDVFEDEPYMKPGLSEMKNAIV  317 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~--gaalDV~~~EP~~~~~L~~~~nvil  317 (386)
                      |+.++-.    .+++..+.   +|||+++|+++---+-|.         ++-.  -..=||-.++-.      + ---.+
T Consensus       209 vIvAiG~----PefVKgdW---iKpGavVIDvGINyvpD~---------~Kksg~klvGDVdfe~Ak------e-vas~I  265 (935)
T KOG4230|consen  209 VIVAIGQ----PEFVKGDW---IKPGAVVIDVGINYVPDP---------SKKSGFKLVGDVDFESAK------E-VASFI  265 (935)
T ss_pred             EEEEcCC----cceeeccc---ccCCcEEEEccccccCCC---------CCcccceEeeecchHhhh------h-hhhcc
Confidence            9999963    44454444   689999999987554331         2222  233366544321      1 11368


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 016620          318 VPHIASASKWTREGMATLAALNVLGKIKG  346 (386)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~~~~~g  346 (386)
                      ||-=||--+-+..-+.+-+++...+++.+
T Consensus       266 TPVPGGVGPMTVAMLmqNtveaAKR~r~e  294 (935)
T KOG4230|consen  266 TPVPGGVGPMTVAMLMQNTVEAAKRQREE  294 (935)
T ss_pred             ccCCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence            99778766655555555556666666654

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=89.97  E-value=1.8  Score=43.55  Aligned_cols=96  Identities=19%  Similarity=0.349  Sum_probs=66.4

Q ss_pred             cccccCCCeEEEEec---Chh-------HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC
Q 016620          159 VGNLLKGQTVGVIGA---GRI-------GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~---G~I-------G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (386)
                      .++.+.|.+|.|+|+   |.+       .-.+.+.| ...|.+|.+|||+.......+             ...+. ...
T Consensus       316 ~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l-~~~g~~v~~~DP~v~~~~~~~-------------~~~~~-~~~  380 (436)
T COG0677         316 AGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELL-EEWGGEVLVYDPYVKELPTRE-------------DGEGV-TLA  380 (436)
T ss_pred             cCCCCcCceEEEEEeeecCCCcccccCchHHHHHHH-HHhCCeEEEECCCCCcchhhh-------------hcccc-chh
Confidence            357799999999998   544       45688887 578999999999876411000             00001 136


Q ss_pred             CHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       229 ~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      ++++.++.+|+|++.+-.  +...-++.+.+..+  ..+++++ |+
T Consensus       381 ~~e~al~~~D~vVi~tDH--~~fk~id~~~i~~~--~~vivDt-rn  421 (436)
T COG0677         381 ILEEALKDADAVVIATDH--SEFKEIDYEAIGKE--AKVIVDT-RN  421 (436)
T ss_pred             hHHHHhccCCEEEEEecc--HHhhcCCHHHhccC--CcEEEEC-cc
Confidence            889999999999999864  22335777777755  5677775 53

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=89.85  E-value=1.7  Score=42.39  Aligned_cols=96  Identities=16%  Similarity=0.164  Sum_probs=57.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHH----Hhh-hC
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDE----VLR-EA  237 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~e----ll~-~a  237 (386)
                      .|++|.|.|.|.+|+.+++.+ +..|++|++.+++.....  +       ++..+......... .++.+    +.. ..
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a-~~~G~~vi~~~~~~~~~~--~-------~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~  234 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIA-SALGARVIAVDIDDDKLE--L-------ARELGAVATVNASEVEDVAAAVRDLTGGGA  234 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEeCCHHHHH--H-------HHHhCCCEEEccccchhHHHHHHHHhCCCC
Confidence            578999999999999999985 799999998877654321  1       11112111100011 12222    111 47


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      |+++-+... ..+    -...++.++++..+++++..
T Consensus       235 d~vi~~~g~-~~~----~~~~~~~l~~~g~~i~~g~~  266 (345)
T cd08260         235 HVSVDALGI-PET----CRNSVASLRKRGRHVQVGLT  266 (345)
T ss_pred             CEEEEcCCC-HHH----HHHHHHHhhcCCEEEEeCCc
Confidence            888877642 111    23567778888888887653

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK12747 short chain dehydrogenase; Provisional

Probab=89.82  E-value=1.5  Score=40.56  Aligned_cols=34  Identities=29%  Similarity=0.210  Sum_probs=28.3

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcC
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDL  197 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~  197 (386)
                      +.|+++.|.|. |.||+++|+.|+ ..|++|+..++
T Consensus         2 ~~~k~~lItGas~gIG~~ia~~l~-~~G~~v~~~~~   36 (252)
T PRK12747          2 LKGKVALVTGASRGIGRAIAKRLA-NDGALVAIHYG   36 (252)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEcC
Confidence            46889999985 899999999984 78999988653

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=89.81  E-value=0.72  Score=44.94  Aligned_cols=99  Identities=17%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             EEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCC-
Q 016620          170 VIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD-  247 (386)
Q Consensus       170 IvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt-  247 (386)
                      |||.|.+|..+|-.|+. .+.-++..+|.........-.+..    ..............+-.+.+++||+|+++.-.. 
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~----~~~~~~~~~~~i~~~~~~~~~daDivVitag~~r   76 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQ----HAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQ   76 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHH----HhhcccCCCeEEecCCHHHHCCCCEEEECCCCCC
Confidence            68999999999987642 444479999986543222222211    011111111111123357789999999975431 


Q ss_pred             -h-hhh--------hccc--HHHHhcCCCCcEEEEcC
Q 016620          248 -K-TTY--------HLIN--KERLATMKKEAILVNCS  272 (386)
Q Consensus       248 -~-~t~--------~li~--~~~~~~mk~gailIN~a  272 (386)
                       + .++        .++.  .+.+....+.+++++++
T Consensus        77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  113 (299)
T TIGR01771        77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVAT  113 (299)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence             1 122        1111  12333456888998876

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PRK06172 short chain dehydrogenase; Provisional

Probab=89.74  E-value=0.71  Score=42.82  Aligned_cols=39  Identities=23%  Similarity=0.195  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .+.|+++.|.|. |.||+.+|+.|+ .-|++|+..+|+...
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~   43 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAG   43 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            478999999987 899999999985 679999999987643

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=89.72  E-value=1.9  Score=42.52  Aligned_cols=38  Identities=18%  Similarity=0.145  Sum_probs=32.0

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      -.|.+|.|.|. |.+|...++.+ +.+|++|++.+++...
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlA-k~~G~~Vi~~~~~~~k  195 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLA-KLHGCYVVGSAGSSQK  195 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEcCCHHH
Confidence            35889999999 99999999974 8999999988776543

>PLN02740 Alcohol dehydrogenase-like

Probab=89.72  E-value=1.7  Score=43.35  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=32.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.+++...
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~a-k~~G~~~Vi~~~~~~~r  235 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGA-RARGASKIIGVDINPEK  235 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCCcEEEEcCChHH
Confidence            4688999999999999999985 89999 69988876543

>PRK07985 oxidoreductase; Provisional

Probab=89.71  E-value=1.1  Score=43.16  Aligned_cols=36  Identities=25%  Similarity=0.127  Sum_probs=30.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      .+.|+++.|.|. |.||+++|+.|+ ..|++|+..++.
T Consensus        46 ~~~~k~vlITGas~gIG~aia~~L~-~~G~~Vi~~~~~   82 (294)
T PRK07985         46 RLKDRKALVTGGDSGIGRAAAIAYA-REGADVAISYLP   82 (294)
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEecCC
Confidence            378999999986 899999999985 679999887654

>PRK05866 short chain dehydrogenase; Provisional

Probab=89.55  E-value=0.89  Score=43.74  Aligned_cols=40  Identities=20%  Similarity=0.170  Sum_probs=34.5

Q ss_pred             ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       160 g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      +..+.|+++.|.|. |.||+++|+.|+ .-|++|+..+|+..
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~   75 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARRED   75 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            35688999999987 999999999985 67999999998764

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=89.54  E-value=0.77  Score=40.03  Aligned_cols=31  Identities=35%  Similarity=0.591  Sum_probs=24.6

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEE-cC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DL  197 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~  197 (386)
                      +|||+|+|.||+.+++.+.+.-++++.+. |+
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            79999999999999998644457787664 53

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=89.52  E-value=1.5  Score=44.38  Aligned_cols=91  Identities=8%  Similarity=-0.079  Sum_probs=53.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhhCCE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDi  239 (386)
                      ...++-|+|+|.+|+.+++.| +..|.++.+.+++.....           ...+. ........+.+.+    +++|+.
T Consensus       239 ~k~HvII~G~g~lg~~v~~~L-~~~g~~vvVId~d~~~~~-----------~~~g~-~vI~GD~td~e~L~~AgI~~A~a  305 (393)
T PRK10537        239 RKDHFIICGHSPLAINTYLGL-RQRGQAVTVIVPLGLEHR-----------LPDDA-DLIPGDSSDSAVLKKAGAARARA  305 (393)
T ss_pred             cCCeEEEECCChHHHHHHHHH-HHCCCCEEEEECchhhhh-----------ccCCC-cEEEeCCCCHHHHHhcCcccCCE
Confidence            356799999999999999998 567888888886532110           01111 1111112222222    568899


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEE
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILV  269 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailI  269 (386)
                      |+++++.+.++...  ....+.+.|...+|
T Consensus       306 VI~~t~dD~~Nl~i--vL~ar~l~p~~kII  333 (393)
T PRK10537        306 ILALRDNDADNAFV--VLAAKEMSSDVKTV  333 (393)
T ss_pred             EEEcCCChHHHHHH--HHHHHHhCCCCcEE
Confidence            99988865554433  33445555554443

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=89.48  E-value=2.2  Score=41.65  Aligned_cols=38  Identities=21%  Similarity=0.141  Sum_probs=31.9

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      -.|.+|.|.|. |.+|+.+++.+ +.+|++|++.+++...
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlA-k~~G~~Vi~~~~~~~~  188 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLA-KLKGCYVVGSAGSDEK  188 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            36889999998 99999999975 8999999988776543

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=89.41  E-value=0.47  Score=40.19  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=27.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~  199 (386)
                      .++|.|+|+|.+|..+|+.|+ ..|+ ++..+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence            578999999999999999985 4566 788888654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=89.33  E-value=0.81  Score=48.43  Aligned_cols=38  Identities=18%  Similarity=0.152  Sum_probs=32.3

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      -.|++|.|.|. |.||+.+++.|+ ..|++|.+++|+...
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LL-k~G~~Vval~Rn~ek  116 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELL-KLGFRVRAGVRSAQR  116 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHH-HCCCeEEEEeCCHHH
Confidence            46789999987 999999999984 679999999887654

>PRK06182 short chain dehydrogenase; Validated

Probab=89.21  E-value=1.2  Score=42.09  Aligned_cols=37  Identities=22%  Similarity=0.131  Sum_probs=31.4

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .++++.|.|. |.||+++|+.|+ .-|++|++.+|+...
T Consensus         2 ~~k~vlItGasggiG~~la~~l~-~~G~~V~~~~r~~~~   39 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLA-AQGYTVYGAARRVDK   39 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            4688999996 899999999984 679999999987653

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.15  E-value=4.4  Score=41.45  Aligned_cols=114  Identities=19%  Similarity=0.163  Sum_probs=66.0

Q ss_pred             cCC-CeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhhCCE
Q 016620          163 LKG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV  239 (386)
Q Consensus       163 l~g-~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDi  239 (386)
                      +.+ ++|.|+|+|.+|.+.++.|.+.-| ++|.++|..........       ++.    +.... ...+ .+.+.++|+
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~-------l~~----g~~~~~g~~~-~~~~~~~d~   71 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQ-------LPE----DVELHSGGWN-LEWLLEADL   71 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHH-------hhc----CCEEEeCCCC-hHHhccCCE
Confidence            455 789999999999999998754444 89999997543211110       111    11111 1112 234578998


Q ss_pred             EEEccCCChhhh----------hcccH-HHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          240 ISLHPVLDKTTY----------HLINK-ERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       240 Vvl~lPlt~~t~----------~li~~-~~~-~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      |+...-..+...          .++.+ +.+ ..++...+-|--+-|+.--..-|...|+.
T Consensus        72 vV~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  132 (438)
T PRK04663         72 VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA  132 (438)
T ss_pred             EEECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            887753322211          23333 232 23444556677777887766667777765

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=89.07  E-value=1.9  Score=44.34  Aligned_cols=125  Identities=17%  Similarity=0.284  Sum_probs=72.9

Q ss_pred             CeEEEEecChhHHH--HHHHHHh---cCC-cEEEEEcCChhhHHHHHHhhhhhhh-hhcCCCCccccccCCHHHHhhhCC
Q 016620          166 QTVGVIGAGRIGSA--YARMMVE---GFK-MNLIYYDLYQATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       166 ~~vgIvG~G~IG~~--iA~~L~~---~fg-~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      ++|.|||.|+. ..  +.+-|.+   .++ -+|..+|...... +. ...+.... +..+ .+..+....+.+|++..||
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl-~~-v~~l~~~~~~~~g-~~~~v~~Ttdr~eAl~gAD   76 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQ-EK-VAEAVKILFKENY-PEIKFVYTTDPEEAFTDAD   76 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHH-HH-HHHHHHHHHHhhC-CCeEEEEECCHHHHhCCCC
Confidence            47999999986 33  3332221   244 6899999887432 11 11111222 2223 3445666789999999999


Q ss_pred             EEEEccCCCh-h----------hhhccc----------------------HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 016620          239 VISLHPVLDK-T----------TYHLIN----------------------KERLATMKKEAILVNCSRGPVIDEVALVEH  285 (386)
Q Consensus       239 iVvl~lPlt~-~----------t~~li~----------------------~~~~~~mk~gailIN~aRg~~vde~aL~~a  285 (386)
                      +|++..-... +          -+++++                      .+.+....|++++||.+-..=+-..++.+.
T Consensus        77 fVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~  156 (437)
T cd05298          77 FVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRL  156 (437)
T ss_pred             EEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHH
Confidence            9998764332 1          112222                      112333458999999988765656666655


Q ss_pred             HHcCCcceE
Q 016620          286 LKQNPMFRV  294 (386)
Q Consensus       286 L~~g~i~ga  294 (386)
                      +...++.|.
T Consensus       157 ~~~~kviGl  165 (437)
T cd05298         157 FPNARILNI  165 (437)
T ss_pred             CCCCCEEEE
Confidence            433445444

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PLN02427 UDP-apiose/xylose synthase

Probab=89.01  E-value=0.72  Score=46.11  Aligned_cols=41  Identities=29%  Similarity=0.436  Sum_probs=33.4

Q ss_pred             cccccCCCeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCChh
Q 016620          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLYQA  200 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~-G~IG~~iA~~L~~~f-g~~V~~~d~~~~  200 (386)
                      .|+.++.++|.|.|. |-||+.+++.|. .- |.+|+++|+...
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~-~~~g~~V~~l~r~~~   50 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLM-TETPHKVLALDVYND   50 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHH-hcCCCEEEEEecCch
Confidence            356788899999985 999999999985 44 589999997643

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=89.00  E-value=2.8  Score=41.08  Aligned_cols=96  Identities=19%  Similarity=0.160  Sum_probs=57.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH----HHHhh--
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--  235 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell~--  235 (386)
                      -.|.+|.|.|.|.+|...++.+ +..|+ +|++.+++.....  +       ++..+..........++    .++..  
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a-~~~G~~~v~~~~~~~~~~~--~-------~~~~ga~~~i~~~~~~~~~~l~~~~~~~  240 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILAL-KAAGASKIIVSEPSEARRE--L-------AEELGATIVLDPTEVDVVAEVRKLTGGG  240 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--H-------HHHhCCCEEECCCccCHHHHHHHHhCCC
Confidence            3578999999999999999985 78999 7888887654321  1       11112111000011122    22222  


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ..|+|+-+.... .+    -...++.++++..++.++.
T Consensus       241 ~~d~vid~~g~~-~~----~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         241 GVDVSFDCAGVQ-AT----LDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCCEEEECCCCH-HH----HHHHHHhccCCCEEEEEcc
Confidence            378888877531 11    1456677888888888764

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=88.98  E-value=0.96  Score=41.56  Aligned_cols=38  Identities=29%  Similarity=0.290  Sum_probs=32.7

Q ss_pred             ccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+.++++.|.| .|.+|+.+++.|+ ..|++|++.+|+..
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~-~~g~~V~~~~r~~~   41 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLA-ADGAEVIVVDICGD   41 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            46789999998 5999999999984 67999999998754

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=88.96  E-value=2.1  Score=42.31  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=25.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      .+|||=|||+||+.+.|.+...-+.+|.+.+..
T Consensus         3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~   35 (331)
T PRK15425          3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   35 (331)
T ss_pred             eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC
Confidence            379999999999999997533346788877643

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=88.95  E-value=1.4  Score=43.58  Aligned_cols=102  Identities=20%  Similarity=0.248  Sum_probs=53.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCCEEEEc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDiVvl~  243 (386)
                      .+|+|+|. |-.|.++.++|+.-=..++..++.+... -....+.++ .+  .+....... ..+.+++ ..+||+|++|
T Consensus         3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~-g~~~~~~~p-~l--~g~~~l~~~-~~~~~~~~~~~~DvvFla   77 (349)
T COG0002           3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERA-GKPVSDVHP-NL--RGLVDLPFQ-TIDPEKIELDECDVVFLA   77 (349)
T ss_pred             ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhc-CCchHHhCc-cc--ccccccccc-cCChhhhhcccCCEEEEe
Confidence            47999998 9999999999864445676666544321 011111110 00  111111111 1233343 4569999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v  277 (386)
                      +|.... ..++ .+++   .+|..+||.|---=+
T Consensus        78 lPhg~s-~~~v-~~l~---~~g~~VIDLSadfR~  106 (349)
T COG0002          78 LPHGVS-AELV-PELL---EAGCKVIDLSADFRL  106 (349)
T ss_pred             cCchhH-HHHH-HHHH---hCCCeEEECCccccc
Confidence            996432 2222 2222   346668888753333

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=88.94  E-value=1.1  Score=45.30  Aligned_cols=65  Identities=15%  Similarity=0.104  Sum_probs=50.3

Q ss_pred             cCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 016620          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (386)
Q Consensus       163 l~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (386)
                      ..|++|+|+|+.          +-+..+++.| ...|++|.+|||......               ..  ......++.+
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~~---------------~~--~~~~~~~~~~  355 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKEDS---------------FF--NSRLERDLAT  355 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCchh---------------hc--CCeeeCCHHH
Confidence            478999999993          5677899998 689999999999754311               11  2334679999


Q ss_pred             HhhhCCEEEEccC
Q 016620          233 VLREADVISLHPV  245 (386)
Q Consensus       233 ll~~aDiVvl~lP  245 (386)
                      .++.||.|++..-
T Consensus       356 ~~~~~~~~~~~~~  368 (388)
T PRK15057        356 FKQQADVIISNRM  368 (388)
T ss_pred             HHHhCCEEEEcCC
Confidence            9999999998874

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=88.93  E-value=3.4  Score=40.01  Aligned_cols=107  Identities=17%  Similarity=0.153  Sum_probs=59.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHH---HH-----------HhhhhhhhhhcCC-CCccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLE---KF-----------VTAYGQFLKANGE-QPVTW  224 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~---~~-----------~~~~~~~~~~~~~-~~~~~  224 (386)
                      +.|.+.+|.|+|+|.+|.++|+.|+ ..|. ++..+|...-....   +|           .+...+.+++... .....
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~   93 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTV   93 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence            4589999999999999999999985 5566 68888865421100   00           0000011111111 00111


Q ss_pred             cccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       225 ~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      ......++.+.+.|+|+.+.. +.+++..+|+-.-+   .+.-+|.++
T Consensus        94 ~~~~~~~~~l~~fdvVV~~~~-~~~~~~~in~~c~~---~~ipfI~a~  137 (286)
T cd01491          94 STGPLTTDELLKFQVVVLTDA-SLEDQLKINEFCHS---PGIKFISAD  137 (286)
T ss_pred             EeccCCHHHHhcCCEEEEecC-CHHHHHHHHHHHHH---cCCEEEEEe
Confidence            111123577889998887764 55666666654433   344455543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>PRK07326 short chain dehydrogenase; Provisional

Probab=88.92  E-value=0.99  Score=41.27  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=32.2

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +.++++.|+|. |.||+.+++.|+ ..|++|++.+|+...
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~   42 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKE   42 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHH
Confidence            46789999986 999999999985 579999999987643

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=88.92  E-value=2.4  Score=40.85  Aligned_cols=96  Identities=18%  Similarity=0.192  Sum_probs=58.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiVv  241 (386)
                      -.|.+|.|+|.|.+|+.+++.+ +..|.+|++.+++.....  +..       ..+..........+. ...-...|+++
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a-~~~G~~v~~~~~~~~~~~--~~~-------~~g~~~~~~~~~~~~~~~~~~~~d~vi  230 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYA-RAMGFETVAITRSPDKRE--LAR-------KLGADEVVDSGAELDEQAAAGGADVIL  230 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HHH-------HhCCcEEeccCCcchHHhccCCCCEEE
Confidence            4568899999999999988875 789999999987765421  111       111111000000111 11123578888


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      -++....     ...+.++.|+++..+++++.
T Consensus       231 ~~~~~~~-----~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         231 VTVVSGA-----AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             ECCCcHH-----HHHHHHHhcccCCEEEEECC
Confidence            7764211     23556788888888888864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=88.78  E-value=3.2  Score=42.42  Aligned_cols=127  Identities=17%  Similarity=0.223  Sum_probs=72.1

Q ss_pred             CeEEEEecChhHHH-HHHHHHh---cCC-cEEEEEcCC-hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          166 QTVGVIGAGRIGSA-YARMMVE---GFK-MNLIYYDLY-QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~---~fg-~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+|.|||.|+.-.. +.+-|++   .++ -+|..+|.. +.. +.. ...+.+........+..+....++++++..||+
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~r-l~~-v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadf   78 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEK-LEI-VGALAKRMVKKAGLPIKVHLTTDRREALEGADF   78 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHH-HHH-HHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCE
Confidence            47999999997442 3343332   244 689999988 432 211 111111121222223445567899999999999


Q ss_pred             EEEccCCChh-hh----------hcc-------------------cHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620          240 ISLHPVLDKT-TY----------HLI-------------------NKE---RLATMKKEAILVNCSRGPVIDEVALVEHL  286 (386)
Q Consensus       240 Vvl~lPlt~~-t~----------~li-------------------~~~---~~~~mk~gailIN~aRg~~vde~aL~~aL  286 (386)
                      |+++.-.... .+          +++                   -.+   .+....|+++++|.+-.-=+-..++.+..
T Consensus        79 Vi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~~k~~  158 (419)
T cd05296          79 VFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAVLRHT  158 (419)
T ss_pred             EEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHHHhc
Confidence            9988543221 11          110                   011   22233589999999886656666666555


Q ss_pred             HcCCcceEE
Q 016620          287 KQNPMFRVG  295 (386)
Q Consensus       287 ~~g~i~gaa  295 (386)
                       ..++.|.+
T Consensus       159 -~~rviGlc  166 (419)
T cd05296         159 -GDRVIGLC  166 (419)
T ss_pred             -cCCEEeeC
Confidence             44555553

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=88.76  E-value=0.93  Score=44.69  Aligned_cols=76  Identities=21%  Similarity=0.213  Sum_probs=44.0

Q ss_pred             eEEEEec-ChhHHHHHHHHHh-c-----CCcEEEEEcCChhhH-HHH-HHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          167 TVGVIGA-GRIGSAYARMMVE-G-----FKMNLIYYDLYQATR-LEK-FVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       167 ~vgIvG~-G~IG~~iA~~L~~-~-----fg~~V~~~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      +|+|+|. |.+|+.++..|.. +     .+.++..+|+..... ... ..+.    .+.............++.+.++.|
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl----~d~~~~~~~~~~~~~~~~~~l~~a   79 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMEL----QDCAFPLLKSVVATTDPEEAFKDV   79 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeeh----hhccccccCCceecCCHHHHhCCC
Confidence            6999999 9999999988742 1     124899999854211 111 0000    000000000111235777889999


Q ss_pred             CEEEEccCC
Q 016620          238 DVISLHPVL  246 (386)
Q Consensus       238 DiVvl~lPl  246 (386)
                      |+|+++.-.
T Consensus        80 DiVI~tAG~   88 (325)
T cd01336          80 DVAILVGAM   88 (325)
T ss_pred             CEEEEeCCc
Confidence            999887543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=88.70  E-value=2.4  Score=41.96  Aligned_cols=38  Identities=32%  Similarity=0.339  Sum_probs=32.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      -.|.+|.|.|.|.+|...++.+ +.+|+ +|++.+++...
T Consensus       186 ~~g~~VlV~G~g~vG~~a~q~a-k~~G~~~vi~~~~~~~~  224 (369)
T cd08301         186 KKGSTVAIFGLGAVGLAVAEGA-RIRGASRIIGVDLNPSK  224 (369)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            3688999999999999999985 79999 79999877543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=88.55  E-value=5.1  Score=34.26  Aligned_cols=65  Identities=23%  Similarity=0.296  Sum_probs=48.0

Q ss_pred             cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (386)
Q Consensus       227 ~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~  301 (386)
                      ..+-++++++||+|+-.-|.+        .+.++.|++|.+++-.....  ....+++.|.++++...++|-...
T Consensus        55 ~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   55 VSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             ESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             ecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            345679999999998877753        55678899999999887644  588888888889999999987654

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=88.50  E-value=2.6  Score=40.53  Aligned_cols=37  Identities=27%  Similarity=0.246  Sum_probs=31.1

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|.+|.|.| .|.+|..+++.+ +.+|++|++.+++...
T Consensus       143 ~g~~vlI~ga~g~vG~~aiqlA-~~~G~~vi~~~~s~~~  180 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQIA-KIKGCKVIGCAGSDDK  180 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            578999999 599999999985 7899999988876543

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=88.44  E-value=1.3  Score=45.54  Aligned_cols=114  Identities=20%  Similarity=0.252  Sum_probs=66.8

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc--ccCC---HHHHhhhCCEEE
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASS---MDEVLREADVIS  241 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---l~ell~~aDiVv  241 (386)
                      +|.|+|+|..|.+.|+.| ...|.+|.++|+...........    .+...+   ....  ...+   +.+.+.+.|.|+
T Consensus         2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~----~l~~~g---i~~~~g~~~~~~~~~~~~~~~d~vv   73 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQ----ELEQEG---ITVKLGKPLELESFQPWLDQPDLVV   73 (459)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHH----HHHHcC---CEEEECCccchhhhhHHhhcCCEEE
Confidence            589999999999999987 57899999999765443221000    011111   1111  0111   224677899998


Q ss_pred             EccCCChhhh----------hcccHH-H-HhcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 016620          242 LHPVLDKTTY----------HLINKE-R-LATMKK-EAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       242 l~lPlt~~t~----------~li~~~-~-~~~mk~-gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      ......++..          .++.+- . ...+++ ..+-|--+.|+.--..-|...|+.
T Consensus        74 ~s~gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~  133 (459)
T PRK02705         74 VSPGIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA  133 (459)
T ss_pred             ECCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            8654433221          123332 2 233333 456677778887767766777765

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=88.42  E-value=1.6  Score=43.51  Aligned_cols=164  Identities=13%  Similarity=0.208  Sum_probs=80.5

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcE---EEEEcCC--hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMN---LIYYDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~---V~~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      .+.+|||||. |..|+.+.+.|..--.+.   +..+...  ....           ..-.+ ....... .+.++ ++++
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~-----------~~~~~-~~l~v~~-~~~~~-~~~~   69 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKT-----------VQFKG-REIIIQE-AKINS-FEGV   69 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCC-----------eeeCC-cceEEEe-CCHHH-hcCC
Confidence            3468999998 999999999985223333   4433322  1111           00001 1111111 24334 4789


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC---CCc----c----cCHHHHHHHHHcCCcceEEeeccCCCC-CC
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS---RGP----V----IDEVALVEHLKQNPMFRVGLDVFEDEP-YM  305 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a---Rg~----~----vde~aL~~aL~~g~i~gaalDV~~~EP-~~  305 (386)
                      |+++.|+|.. .+..+. .+.   .+.|+.+||.|   |-+    +    ++.+.|.++  .|-++.-  ..+..-= +.
T Consensus        70 Divf~a~~~~-~s~~~~-~~~---~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~~--~~iIanP--nC~tt~~~la  140 (347)
T PRK06728         70 DIAFFSAGGE-VSRQFV-NQA---VSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKEH--KGIIAVP--NCSALQMVTA  140 (347)
T ss_pred             CEEEECCChH-HHHHHH-HHH---HHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhcc--CCEEECC--CCHHHHHHHH
Confidence            9999999853 222221 111   35789999988   422    1    344444431  1111000  0000000 00


Q ss_pred             CCCCCC---CCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Q 016620          306 KPGLSE---MKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGN  352 (386)
Q Consensus       306 ~~~L~~---~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~  352 (386)
                      -.||.+   ..+|+++-- .+.|-..+..+. ...++..++++|+++...
T Consensus       141 L~PL~~~~~i~~v~V~t~-qavSGAG~~gv~-eL~~qt~~~l~~~~~~~~  188 (347)
T PRK06728        141 LQPIRKVFGLERIIVSTY-QAVSGSGIHAIQ-ELKEQAKSILAGEEVEST  188 (347)
T ss_pred             HHHHHHcCCccEEEEEEe-ecccccchhhHH-HHHHHHHHHhcCCCCccc
Confidence            012222   356777663 334444444443 445778888888775443

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=88.41  E-value=2.9  Score=39.76  Aligned_cols=96  Identities=22%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH----HHHh--h
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVL--R  235 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~ell--~  235 (386)
                      -.|.+|.|.|.|.+|+.+++.+ +..|++ |++.++......  ....       .+..........++    .++.  .
T Consensus       128 ~~~~~vlI~g~g~vg~~~~~la-~~~g~~~v~~~~~~~~~~~--~~~~-------~g~~~~~~~~~~~~~~~l~~~~~~~  197 (312)
T cd08269         128 RAGKTVAVIGAGFIGLLFLQLA-AAAGARRVIAIDRRPARLA--LARE-------LGATEVVTDDSEAIVERVRELTGGA  197 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHHH--HHHH-------hCCceEecCCCcCHHHHHHHHcCCC
Confidence            3678999999999999999985 899999 888877643321  1111       11110000011122    2222  2


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ..|+++-+....    . .....++.|+++..+++++.
T Consensus       198 ~vd~vld~~g~~----~-~~~~~~~~l~~~g~~~~~g~  230 (312)
T cd08269         198 GADVVIEAVGHQ----W-PLDLAGELVAERGRLVIFGY  230 (312)
T ss_pred             CCCEEEECCCCH----H-HHHHHHHHhccCCEEEEEcc
Confidence            367777765421    1 12445677888888888764

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=88.34  E-value=2.4  Score=44.46  Aligned_cols=102  Identities=18%  Similarity=0.128  Sum_probs=64.2

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      .+.|.+|+++|=   |++..+++..+ ..|| ++|.+..|..-.-.+.+.+.    ++.   .+.......+++|.+++|
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~~----a~~---~G~~v~i~~d~~eav~~A  242 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVEK----MKK---NGFEVRIFSSIEEYLSQK  242 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHHH----HHH---cCCeEEEEcCHHHHhccC
Confidence            478999999998   58898989886 5798 99999887532111111111    111   122233457899999999


Q ss_pred             CEE--EE-------ccCCC--h---h--hhhcccHHHHhcCCCCcEEEEc
Q 016620          238 DVI--SL-------HPVLD--K---T--TYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       238 DiV--vl-------~lPlt--~---~--t~~li~~~~~~~mk~gailIN~  271 (386)
                      |+.  ..       .+...  +   +  -...++++.++.+|++++|.-+
T Consensus       243 D~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHc  292 (525)
T PRK13376        243 DVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHP  292 (525)
T ss_pred             CccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECC
Confidence            952  22       22211  0   0  1234688888888888887543

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.33  E-value=0.65  Score=45.29  Aligned_cols=38  Identities=29%  Similarity=0.316  Sum_probs=33.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      =.|+++.|+|+|.+|.++++-. +++|+ ++++.|-++++
T Consensus       191 ~~GstvAVfGLG~VGLav~~Ga-ka~GAsrIIgvDiN~~K  229 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGA-KAAGASRIIGVDINPDK  229 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhH-HhcCcccEEEEecCHHH
Confidence            4789999999999999999984 78888 79999988765

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=88.32  E-value=3.5  Score=41.67  Aligned_cols=76  Identities=18%  Similarity=0.086  Sum_probs=42.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-c-CCc----EEEEE--cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          166 QTVGVIGA-GRIGSAYARMMVE-G-FKM----NLIYY--DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~-~-fg~----~V~~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      .+|+|+|. |.+|..+|-.|+. + ++.    .++.+  |...+.....-.+..+...    ..........+-.+.+++
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~----~~~~~v~i~~~~y~~~kd  120 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLY----PLLREVSIGIDPYEVFED  120 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhh----hhcCceEEecCCHHHhCC
Confidence            47999999 9999999987643 2 231    34344  6655443222222211110    000111112344577899


Q ss_pred             CCEEEEccC
Q 016620          237 ADVISLHPV  245 (386)
Q Consensus       237 aDiVvl~lP  245 (386)
                      ||+|+++.-
T Consensus       121 aDIVVitAG  129 (387)
T TIGR01757       121 ADWALLIGA  129 (387)
T ss_pred             CCEEEECCC
Confidence            999999754

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=88.28  E-value=0.6  Score=44.94  Aligned_cols=32  Identities=25%  Similarity=0.306  Sum_probs=27.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      ++|.|+| -|.+|+.+.+.| +..|.+|+.+++.
T Consensus         1 MriLI~GasG~lG~~l~~~l-~~~~~~v~~~~r~   33 (286)
T PF04321_consen    1 MRILITGASGFLGSALARAL-KERGYEVIATSRS   33 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHH-TTTSEEEEEESTT
T ss_pred             CEEEEECCCCHHHHHHHHHH-hhCCCEEEEeCch
Confidence            5799999 599999999998 6789999999765

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>CHL00194 ycf39 Ycf39; Provisional

Probab=88.26  E-value=1.2  Score=43.24  Aligned_cols=70  Identities=17%  Similarity=0.178  Sum_probs=44.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|.|.| .|.||+.+++.|. .-|.+|.+.+|+.....  +       +...+..-.  ......++.++++.+|+|+.
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll-~~g~~V~~l~R~~~~~~--~-------l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~   70 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQAL-DEGYQVRCLVRNLRKAS--F-------LKEWGAELVYGDLSLPETLPPSFKGVTAIID   70 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCeEEEEEcChHHhh--h-------HhhcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence            4789999 4999999999984 67899999988754311  0       000010000  01122456788999999887


Q ss_pred             ccC
Q 016620          243 HPV  245 (386)
Q Consensus       243 ~lP  245 (386)
                      +..
T Consensus        71 ~~~   73 (317)
T CHL00194         71 AST   73 (317)
T ss_pred             CCC
Confidence            654

>PRK05867 short chain dehydrogenase; Provisional

Probab=88.22  E-value=1.1  Score=41.53  Aligned_cols=39  Identities=21%  Similarity=0.115  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .+.|+++.|.|. |.||+++|+.|+ ..|++|+..+++...
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~   45 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYV-EAGAQVAIAARHLDA   45 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCHHH
Confidence            478999999997 899999999985 689999999887543

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=88.13  E-value=2.3  Score=41.59  Aligned_cols=91  Identities=18%  Similarity=0.120  Sum_probs=56.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .|.+|.|.|.|.+|...++. ++..|++|++.+++.....  +       .++.|......  ..  ++.-...|+++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~~--~-------a~~~Ga~~vi~--~~--~~~~~~~d~~i~~  230 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAARR--L-------ALALGAASAGG--AY--DTPPEPLDAAILF  230 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHHH--H-------HHHhCCceecc--cc--ccCcccceEEEEC
Confidence            58899999999999988887 5889999999888755421  1       12223211100  00  0111246777766


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .... .   . -...++.++++..++.++.
T Consensus       231 ~~~~-~---~-~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       231 APAG-G---L-VPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             CCcH-H---H-HHHHHHhhCCCcEEEEEec
Confidence            5532 2   1 2456777888888887764

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=88.06  E-value=2.5  Score=44.14  Aligned_cols=89  Identities=12%  Similarity=0.151  Sum_probs=53.7

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh-------------HHHHHHhhhhhhhhhcCCC---Cc
Q 016620          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------------RLEKFVTAYGQFLKANGEQ---PV  222 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~---~~  222 (386)
                      .+.....++|+|||.|.-|-..|+.|++..|.+|..|++.+..             ........+...+...+..   ..
T Consensus        33 ~~~~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv  112 (506)
T PTZ00188         33 FTNEAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNV  112 (506)
T ss_pred             CCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeee
Confidence            3344568899999999999999986544568999999876542             0011111111111111100   11


Q ss_pred             cccccCCHHHHhhhCCEEEEccCCC
Q 016620          223 TWKRASSMDEVLREADVISLHPVLD  247 (386)
Q Consensus       223 ~~~~~~~l~ell~~aDiVvl~lPlt  247 (386)
                      ......+++++.++.|.|++++-..
T Consensus       113 ~VG~Dvt~eeL~~~YDAVIlAtGA~  137 (506)
T PTZ00188        113 HVGVDLKMEELRNHYNCVIFCCGAS  137 (506)
T ss_pred             EecCccCHHHHHhcCCEEEEEcCCC
Confidence            1112347899999999999987543

>PRK08589 short chain dehydrogenase; Validated

Probab=87.98  E-value=0.99  Score=42.67  Aligned_cols=36  Identities=22%  Similarity=0.216  Sum_probs=31.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      .+.|+++.|.|. |.||+++|+.|+ ..|++|+..+++
T Consensus         3 ~l~~k~vlItGas~gIG~aia~~l~-~~G~~vi~~~r~   39 (272)
T PRK08589          3 RLENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIA   39 (272)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCc
Confidence            378999999988 889999999985 679999999987

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=87.94  E-value=3.3  Score=41.01  Aligned_cols=38  Identities=24%  Similarity=0.251  Sum_probs=32.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      ..|.+|.|+|.|.+|...++. ++.+|+ +|++.+++...
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~-a~~~G~~~Vi~~~~~~~~  221 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMG-AKIAGASRIIGVDINEDK  221 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence            468899999999999999997 489999 69888876543

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK06125 short chain dehydrogenase; Provisional

Probab=87.94  E-value=1.5  Score=40.87  Aligned_cols=39  Identities=26%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .+.|+++.|.|. |.||+++|+.|+ ..|++|++.+++...
T Consensus         4 ~~~~k~vlItG~~~giG~~ia~~l~-~~G~~V~~~~r~~~~   43 (259)
T PRK06125          4 HLAGKRVLITGASKGIGAAAAEAFA-AEGCHLHLVARDADA   43 (259)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            468899999998 789999999985 679999999987643

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=87.90  E-value=2.3  Score=42.11  Aligned_cols=33  Identities=24%  Similarity=0.400  Sum_probs=25.6

Q ss_pred             eEEEEecChhHHHHHHHHHhc--CCcEEEEEcCCh
Q 016620          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYDLYQ  199 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~--fg~~V~~~d~~~  199 (386)
                      +|||=|||+||+.+.|.+...  .+.+|.+.+...
T Consensus         3 ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~~   37 (337)
T PRK07403          3 RVAINGFGRIGRNFLRCWLGRENSQLELVAINDTS   37 (337)
T ss_pred             EEEEEccChHHHHHHHHHHhccCCCeEEEEecCCC
Confidence            799999999999999975322  467888776533

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=87.89  E-value=1.2  Score=44.15  Aligned_cols=89  Identities=17%  Similarity=0.294  Sum_probs=51.8

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhc--C-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCC
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEG--F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREAD  238 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~--f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aD  238 (386)
                      .+.+|+|||. |.+|+.+.+.|. .  | ..++..+......-         ..+.-.+. ...   ..++++. ++++|
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~-~~~hP~~~l~~laS~~saG---------~~~~~~~~-~~~---v~~~~~~~~~~~D   68 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLA-ERQFPVGELYALASEESAG---------ETLRFGGK-SVT---VQDAAEFDWSQAQ   68 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHh-cCCCCceEEEEEEccCcCC---------ceEEECCc-ceE---EEeCchhhccCCC
Confidence            4568999998 999999999985 4  4 33555553322110         00110111 111   2244443 37899


Q ss_pred             EEEEccCCChhhhhcccHHHHhcC-CCCcEEEEcC
Q 016620          239 VISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~m-k~gailIN~a  272 (386)
                      ++++|+|.. ..     .+..... +.|+.+||.|
T Consensus        69 vvf~a~p~~-~s-----~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         69 LAFFVAGRE-AS-----AAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             EEEECCCHH-HH-----HHHHHHHHHCCCEEEECC
Confidence            999999953 22     2222222 5689999998

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=87.88  E-value=1.6  Score=40.21  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=32.7

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      +.|+++.|+|. |.||+.+|+.| ...|++|+..+++..
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~   40 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQE   40 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            67999999998 99999999998 467999999998764

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=87.87  E-value=2.8  Score=41.68  Aligned_cols=38  Identities=32%  Similarity=0.373  Sum_probs=32.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.+++...
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~A-k~~G~~~Vi~~~~~~~~  222 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGA-RMAKASRIIAIDINPAK  222 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHH
Confidence            3578999999999999999974 89999 79998876543

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=87.77  E-value=3.9  Score=39.98  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=31.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~  201 (386)
                      -.|++|.|.|.|.+|...++.+ +..|++ |++.+++...
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a-~~~G~~~v~~~~~~~~~  197 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCA-VALGAKSVTAIDINSEK  197 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHH
Confidence            3578999999999999999985 789997 6778776543

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=87.73  E-value=3.8  Score=45.46  Aligned_cols=112  Identities=24%  Similarity=0.310  Sum_probs=69.2

Q ss_pred             CeEEEEecChhHHHH-HHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~i-A~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      +++.|+|+|.+|.+. |+.| +..|.+|.++|.........        ++..+.   ...... ..+.+..+|+|+...
T Consensus         5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~--------L~~~gi---~~~~g~-~~~~~~~~d~vV~Sp   71 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEK--------LKAKGA---RFFLGH-QEEHVPEDAVVVYSS   71 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHH--------HHHCCC---EEeCCC-CHHHcCCCCEEEECC
Confidence            359999999999998 9987 68999999999765432211        222221   111111 235567899998775


Q ss_pred             CCChhhh----------hcccHH-HHhc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620          245 VLDKTTY----------HLINKE-RLAT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       245 Plt~~t~----------~li~~~-~~~~-mk~-gailIN~aRg~~vde~aL~~aL~~g~  290 (386)
                      ...+++.          .++++- .+.. ++. ..+-|--+.|+.=-..-+...|++..
T Consensus        72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g  130 (809)
T PRK14573         72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK  130 (809)
T ss_pred             CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            4333222          234443 2223 332 35677778899877777777787643

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=87.69  E-value=2.2  Score=43.23  Aligned_cols=79  Identities=22%  Similarity=0.340  Sum_probs=49.5

Q ss_pred             ccCCCeEEEEec-----C---hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 016620          162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (386)
Q Consensus       162 ~l~g~~vgIvG~-----G---~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (386)
                      .+.|++|+|+|-     |   ++..+++..+ ..||++|.+..|..-...+...+.-.+..+..|   .......+++|.
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea  259 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA  259 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            478999999986     5   4558888876 579999999988632111111110000011112   223345799999


Q ss_pred             hhhCCEEEEcc
Q 016620          234 LREADVISLHP  244 (386)
Q Consensus       234 l~~aDiVvl~l  244 (386)
                      ++++|+|..-.
T Consensus       260 v~~aDvVYtd~  270 (395)
T PRK07200        260 FKDADIVYPKS  270 (395)
T ss_pred             hCCCCEEEEcC
Confidence            99999998764

>PRK06196 oxidoreductase; Provisional

Probab=87.66  E-value=1.7  Score=42.15  Aligned_cols=39  Identities=21%  Similarity=0.185  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .+.|+++.|.|. |.||+++|+.|+ ..|++|++.+|+...
T Consensus        23 ~l~~k~vlITGasggIG~~~a~~L~-~~G~~Vv~~~R~~~~   62 (315)
T PRK06196         23 DLSGKTAIVTGGYSGLGLETTRALA-QAGAHVIVPARRPDV   62 (315)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            478899999988 889999999985 679999999987543

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=87.65  E-value=2.7  Score=41.77  Aligned_cols=32  Identities=16%  Similarity=0.422  Sum_probs=24.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcC
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL  197 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~  197 (386)
                      .+|+|+| .|.+|+.+++.|..--.+++.++..
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~   36 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAA   36 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence            5899998 8999999999985333458877733

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	386
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		9e-40
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		2e-37
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		3e-34
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-29
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		7e-28
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		1e-27
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		2e-27
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		2e-25
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		2e-25
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-24
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		4e-24
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		5e-24
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		6e-24
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		1e-23
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		1e-23
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		2e-23
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		3e-23
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		4e-23
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		5e-23
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		5e-23
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		6e-23
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		7e-23
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		9e-23
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-22
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		1e-22
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-22
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-22
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		2e-22
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		2e-22
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		4e-22
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		5e-22
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		1e-20
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		6e-19
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		6e-19
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		2e-17
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		2e-17
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		3e-17
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		3e-17
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		6e-17
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		4e-15
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		4e-15
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		1e-12
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		1e-12
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		3e-12
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		6e-11
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		7e-11
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		7e-11
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		8e-11
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		6e-10
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		6e-10
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		3e-08
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		5e-08
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		5e-08
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		6e-08
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		3e-07
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		5e-07

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  160 bits (406), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 112/318 (35%), Positives = 172/318 (54%), Gaps = 25/318 (7%)
Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N
Sbjct: 18  MLEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVAN 73
Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD- 151
            AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +  
Sbjct: 74  YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKK 133
Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY   +   +E+ + 
Sbjct: 134 RGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNMRILYYSRTRKEEVERELN 192
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F                ++++LRE+D + L   L + TYHLIN+ERL  MKK AIL
Sbjct: 193 A--EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWT 328
           +N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGA 296
Query: 329 REGMATLAALNVLGKIKG 346
           REGMA L A N++   +G
Sbjct: 297 REGMAELVAKNLIAFKRG 314

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  152 bits (385), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/317 (34%), Positives = 168/317 (52%), Gaps = 25/317 (7%)
Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93
           +E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N 
Sbjct: 19  LEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTXLSERIDKEVFENAPKL--RIVANY 74
Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 151
           AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 152 --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
              W P  F+G  + G+T+G+IG GRIG A A+   +GF   ++YY   +   +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNXRILYYSRTRKEEVERELNA 193
Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
             +F                ++++LRE+D + L   L + TYHLIN+ERL   KK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR 329
           N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L ++ N ++ PHI SAS   R
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR 297
Query: 330 EGMATLAALNVLGKIKG 346
           EG A L A N++   +G
Sbjct: 298 EGXAELVAKNLIAFKRG 314

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/333 (33%), Positives = 179/333 (53%), Gaps = 34/333 (10%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +PG + ++ L E+   VE+   +   L   +++     + +G +G +      
Sbjct: 2   RVLVTRTLPG-KALDRLRERGLEVEV--HRGLFLPKAELL----KRVEGAVGLIPTVEDR 54
Query: 77  TLFAALSRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
                + RA G K  +  +VG ++VD+ AA + GI V +TPGV                 
Sbjct: 55  IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+  +  F M ++Y+
Sbjct: 115 RRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRAL-AFGMRVVYH 173
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
                               A   +P+ +    S++E+L+EADV+SLH  L   T+ L+N
Sbjct: 174 --------------------ARTPKPLPYP-FLSLEELLKEADVVSLHTPLTPETHRLLN 212
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG--LSEMK 313
           +ERL  MK+ AIL+N +RG ++D  ALVE L+ + +F  GLDV + EP + PG  L  + 
Sbjct: 213 RERLFAMKRGAILLNTARGALVDTEALVEALRGH-LFGAGLDVTDPEP-LPPGHPLYALP 270
Query: 314 NAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           NA++ PHI SA + TRE MA +A  N+L  ++G
Sbjct: 271 NAVITPHIGSAGRTTRERMAEVAVENLLAVLEG 303

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 138/260 (53%), Gaps = 21/260 (8%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +N+DV AA + GI V N P                   R+I  AD  MR 
Sbjct: 68  KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE 127
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G+   W     +G  L+G+T+G+IG GRIG   A++      MN++ YD Y      K V
Sbjct: 128 GV---WAKKEAMGIELEGKTIGIIGFGRIGYQVAKI-ANALGMNILLYDPYPNEERAKEV 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              G+F+               ++ +L+E+DV+++H  L ++TYHLIN+ERL  MKK AI
Sbjct: 184 N--GKFV--------------DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASASK 326
           L+N SRGPV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  N ++ PHI +++ 
Sbjct: 228 LINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTV 287
Query: 327 WTREGMATLAALNVLGKIKG 346
             +E      A  V+  +KG
Sbjct: 288 EAQERAGVEVAEKVVKILKG 307

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 75/245 (30%), Positives = 123/245 (50%), Gaps = 17/245 (6%)
Query: 86  GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFM 145
           G K  + ++VGY+++D  AA   GI V +TP V                 RR  EAD  +
Sbjct: 94  GLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXV 153
Query: 146 RAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205
           R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y++    TRL  
Sbjct: 154 RSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIA-TRARGFGLAIHYHN---RTRLSH 209
Query: 206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE 265
            +           E+   +    ++D +L  +D+  +           ++ +R+A + + 
Sbjct: 210 AL-----------EEGAIYH--DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256
Query: 266 AILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
           A+++N SRG +I++ AL+E L+   +F  GLDVF +EP + P    + N  + PHI SA+
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSAT 316
Query: 326 KWTRE 330
             TR+
Sbjct: 317 HETRD 321

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 153/334 (45%), Gaps = 20/334 (5%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 10  KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 67
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S M+VG +++ ++   K GI VG TP V                 R
Sbjct: 68  RILDA-AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 126
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 127 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 185
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 186 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 230
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNA 315
           +    MK+ A+ +N SRG V+++  L + L    +   GLDV   EP      L  +KN 
Sbjct: 231 DFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 290
Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           +++PHI SA+  TR  M+ LAA N+L  ++G P+
Sbjct: 291 VILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM 324

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 29/302 (9%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKC-DGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94
            D ++ I    +T  SV+ ++  + +KC   VI ++ E+              K  S  +
Sbjct: 29  DDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENI-------------KCISTYS 75
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G++++D++A    GI VGN P                   RR  E ++ +R   + GW 
Sbjct: 76  IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE 135
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++A+             
Sbjct: 136 PLELVGEKLDNKTLGIYGFGSIGQALAKR-AQGFDMDIDYFDTHRAS------------- 181
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
            ++ E         S+D +L  +   SL+      T +  NK  + ++ + AI+VN +RG
Sbjct: 182 -SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            ++D   +V  L+   +   G DVF  EP +  G  ++ N  + PHI SA+   RE MA 
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMAH 300
Query: 335 LA 336
            A
Sbjct: 301 QA 302

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 149/333 (44%), Gaps = 20/333 (6%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 8   KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 65
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S  +VG +++ ++   K GI VG TP V                 R
Sbjct: 66  RILDA-AGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 124
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 125 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 183
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 184 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 228
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLSEMKNA 315
           +     K+ A+ +N SRG V+++  L + L    +   GLDV   EP      L  +KN 
Sbjct: 229 DFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNC 288
Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYP 348
           +++PHI SA+  TR   + LAA N+L  ++G P
Sbjct: 289 VILPHIGSATHRTRNTXSLLAANNLLAGLRGEP 321

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  113 bits (283), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 135/296 (45%), Gaps = 24/296 (8%)
Query: 54  DIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVG 113
           D +AL  +    V+G         L  AL +   +  S+ +VG + VD+    + G+ V 
Sbjct: 57  DFLALQAESIRAVVGNSNAGADAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVT 114
Query: 114 NTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           NTP V                 RRI E D+++R G +     +  +     G+ VG+IG 
Sbjct: 115 NTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK--FGDFKLTTKFSGKRVGIIGL 172
Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           GRIG A A    E F   + Y+     +R +K  T Y  +               S+ E+
Sbjct: 173 GRIGLAVAER-AEAFDCPISYF-----SRSKKPNTNYTYY--------------GSVVEL 212
Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
              +D++ +   L   T H+IN+E +  +  + +L+N  RGP +DE  LV  L +  +  
Sbjct: 213 ASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272
Query: 294 VGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
            GLDVFE EP +   L  ++N +++PH+ S +  TR+ MA L   N+     G P+
Sbjct: 273 AGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL 328

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 130/298 (43%), Gaps = 35/298 (11%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+ AG    S   VG +N+D++ A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                        R+    DE M A     W P   +G  ++ Q VGV+G G IG  + R
Sbjct: 107 IAEHAAIQAARVLRQDKRMDEKM-AKRDLRWAPT--IGREVRDQVVGVVGTGHIGQVFMR 163
Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVISL
Sbjct: 164 IM-EGFGAKVIAYDIFKNPELEK----KGYYV-------------DSLDDLYKQADVISL 205
Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
           H        H+IN + +A MK   ++VNCSRG ++D  A++  L    +F   +D +EDE
Sbjct: 206 HVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDE 265
Query: 303 -------------PYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
                        P  +   L +  N +V PH A  +      M   A  N L  I G
Sbjct: 266 VGVFNKDWEGKEFPDKRLADLIDRPNVLVTPHTAFYTTHAVRNMVVKAFNNNLKLING 323

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score =  108 bits (271), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 154/349 (44%), Gaps = 52/349 (14%)
Query: 20  STKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTED 73
           S  P P    + LL  +DC VE+      IL     +A     CD    Q      L E 
Sbjct: 1   SMHPRP---LVALLDGRDCTVEM-----PILKDLATVAF----CDAQSTQEIHEKVLNEA 48
Query: 74  WGETLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXX 125
            G  ++    L+R   + F  + V      GY+NVD+ AA + GIAV N P         
Sbjct: 49  VGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETAD 108
Query: 126 XXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYA 181
                     RR     + +R G     +  +         ++G+T+G+IG GR G A A
Sbjct: 109 STICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVA 168
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
            +  + F  ++I+YD Y               L+   E+ +  +R  ++ ++L ++D +S
Sbjct: 169 -VRAKAFGFSVIFYDPY---------------LQDGIERSLGVQRVYTLQDLLYQSDCVS 212
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E 
Sbjct: 213 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 272
Query: 302 EP--YMKPGLSEMKNAIVVPHIA----SASKWTREGMATLAALNVLGKI 344
           EP  + +  L +  N I  PH A     AS   RE  AT     + G+I
Sbjct: 273 EPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRI 321

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 144/301 (47%), Gaps = 27/301 (8%)
Query: 51  SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGI 110
           S E++  +IG + DG+I   T      +     R   K  S  + GY+N+D+  A K GI
Sbjct: 32  SGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHSAGYDNIDLEEATKRGI 88
Query: 111 AVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQ 166
            V    G+                 R+I  AD+F+R G ++     ++ G      L G+
Sbjct: 89  YVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH-AKIWTGFKRIESLYGK 147
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
            VG++G G IG A AR ++  F + L Y+  ++   +EK + A                R
Sbjct: 148 KVGILGMGAIGKAIARRLIP-FGVKLYYWSRHRKVNVEKELKA----------------R 190
Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
              +DE+L ++D++ L   L + TYH+IN+ER+  ++ +  LVN  RG ++DE A+ E +
Sbjct: 191 YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAI 249
Query: 287 KQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKWTREGMATLAALNVLGKIK 345
           KQ  +     DVFE EP  +  L + +   ++ PH A  +   +E +   A  N+L  ++
Sbjct: 250 KQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLR 309
Query: 346 G 346
           G
Sbjct: 310 G 310

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score =  108 bits (269), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 150/344 (43%), Gaps = 45/344 (13%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG GR+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPY---------------LSDGIERALGLQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP- 303
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP 
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 304 -YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            + +  L +  N I  PH A  S+     M   AA  +   I G
Sbjct: 295 SFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITG 338

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 137/306 (44%), Gaps = 23/306 (7%)
Query: 46  KKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAA 105
           +K  LS E++IA + D C+G+I +        +  A  +   +       G +NVD+ AA
Sbjct: 52  EKQNLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--QVVGRAGTGVDNVDLEAA 108
Query: 106 NKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
            + GI V NTP                   R+I +A   M+ G    W    F+G  L G
Sbjct: 109 TRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWERKKFMGTELNG 165
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           +T+G++G GRIG   A  M + F M  I YD   +  +     ++G              
Sbjct: 166 KTLGILGLGRIGREVATRM-QSFGMKTIGYDPIISPEVS---ASFG-------------V 208
Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
           +   ++E+    D I++H  L  +T  L+N    A  KK   +VNC+RG ++DE AL+  
Sbjct: 209 QQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRA 268
Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK 345
           L+        LDVF +EP     L + +N I  PH+ +++K  +       A+  +  +K
Sbjct: 269 LQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVK 328
Query: 346 GYPIWG 351
           G  + G
Sbjct: 329 GKSLTG 334

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score =  107 bits (266), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 98  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 203
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 204 --LSDGIERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 329
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A  S+   
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 321
Query: 330 EGMATLAALNVLGKIKG 346
             M   AA  +   I G
Sbjct: 322 IEMREEAAREIRRAITG 338

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 22/257 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 95  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVE 154
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 155 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 200
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 201 --LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 258
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKPGLSEMKNAIVVPHIASASKWTR 329
           +RG ++DE AL + LK+  +    LDV E EP  + +  L +  N I  PH A  S+   
Sbjct: 259 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQAS 318
Query: 330 EGMATLAALNVLGKIKG 346
             M   AA  +   I G
Sbjct: 319 IEMREEAAREIRRAITG 335

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/299 (27%), Positives = 133/299 (44%), Gaps = 37/299 (12%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+  G    S   VG +N+D+  A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
                        R+    DE  +   +D  W P   +G  ++ Q VGV+G G IG  + 
Sbjct: 107 IAEHAAIQAARILRQDKAMDE--KVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVFM 162
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           ++M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVIS
Sbjct: 163 QIM-EGFGAKVITYDIFRNPELEK----KGYYV-------------DSLDDLYKQADVIS 204
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E 
Sbjct: 205 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264
Query: 302 E-----------PYMKPGLSEM---KNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           E            +    L+++    N +V PH A  +      M   A  N L  ++G
Sbjct: 265 EVGIFNEDWEGKEFPDARLADLIARPNVLVTPHTAFYTTHAVRNMVVKAFDNNLELVEG 323

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  105 bits (262), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 124/286 (43%), Gaps = 34/286 (11%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 68  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 126
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 127 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 174
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 175 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 220
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             K   I+VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH
Sbjct: 221 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 280
Query: 321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 366
           + +++   ++   T  A +V   + G  +    N     +NE   P
Sbjct: 281 LGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAP 326

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  105 bits (262), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 124/286 (43%), Gaps = 34/286 (11%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 67  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 125
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 126 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 173
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 174 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 219
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPH 320
             K   I+VN +RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH
Sbjct: 220 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPH 279
Query: 321 IASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 366
           + +++   ++   T  A +V   + G  +    N     +NE   P
Sbjct: 280 LGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGGGVVNEEVAP 325

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 149/344 (43%), Gaps = 45/344 (13%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG  R+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPY---------------LSDGIERALGLQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP- 303
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP 
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 304 -YMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
            + +  L +  N I  PH A  S+     M   AA  +   I G
Sbjct: 295 SFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITG 338

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score =  105 bits (261), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 129/272 (47%), Gaps = 35/272 (12%)
Query: 69  QLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
           QLTE+    +FAA +R    A    +VG N V++ AA K GI V N P            
Sbjct: 69  QLTEE----IFAAANRL--IAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVI 122
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
                  RRI        AG   GW         ++G+T+G++G G IGS    +  E  
Sbjct: 123 GEIIMLMRRIFPRSVSAHAG---GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNL-AESL 178
Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M + YYD   + +L+     YG             K A+S+DE+L+ +DV+SLH    K
Sbjct: 179 GMTVRYYD--TSDKLQ-----YGNV-----------KPAASLDELLKTSDVVSLHVPSSK 220
Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP----- 303
           +T  LI + +L  MKK A L+N +RG  +D  AL + L++  +    +DVF  EP     
Sbjct: 221 STSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGE 280
Query: 304 -YMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            +  P L  ++N I+ PHI  +++  +E + T
Sbjct: 281 RFSTP-LQGLENVILTPHIGGSTEEAQERIGT 311

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 23/241 (9%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+  G    S   VG +N+D+  A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
                        R+    DE  +   +D  W P   +G  ++ Q VGV+G G IG  + 
Sbjct: 107 IAEHAAIQAARILRQDKAMDE--KVARHDLRWAPT--IGREVRDQVVGVVGTGHIGQVFM 162
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           ++M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVIS
Sbjct: 163 QIM-EGFGAKVITYDIFRNPELEK----KGYYV-------------DSLDDLYKQADVIS 204
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           LH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E 
Sbjct: 205 LHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEG 264
Query: 302 E 302
           E
Sbjct: 265 E 265

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score =  104 bits (259), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 78  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 138 R-FYGTGLDNATVGFLGXGAIGLAXADRL-QGWGATLQYH--------------AAKALD 181
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 182 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 240
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 241 VVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 300
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 301 VRLEIERCAAQNILQALAG 319

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score =  103 bits (257), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 116/257 (45%), Gaps = 18/257 (7%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSKELIEMKHVTLTTHIGG 307
Query: 324 ASKWTREGMATLAALNV 340
            +  T      L   N+
Sbjct: 308 VAIETFHEFERLTMTNI 324

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 125/295 (42%), Gaps = 38/295 (12%)
Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
           E ++  LS  G K      VG+N ++ +   KY + V N P                   
Sbjct: 60  EVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLL 119
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           R+I E    M       W  NL + N +   TVG+IG G IGSA A +        +I Y
Sbjct: 120 RKIGEFRYRMDHDHDFTWPSNL-ISNEIYNLTVGLIGVGHIGSAVAEIF-SAMGAKVIAY 177
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           D+      E F+T Y  F                 D VL+EAD++SLH  L  +T ++I 
Sbjct: 178 DVAYNPEFEPFLT-YTDF-----------------DTVLKEADIVSLHTPLFPSTENMIG 219
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------------- 302
           +++L  MKK A L+NC+RG ++D  AL++ L+   +   GLD    E             
Sbjct: 220 EKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSE 279
Query: 303 -PYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
            P     L++M N ++ PH A  ++ +   M  +   + L   KG    G P  +
Sbjct: 280 IPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQLTIAKG----GRPRSI 330

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score =  102 bits (254), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score =  102 bits (253), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 116/259 (44%), Gaps = 25/259 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--------PGLSEMKNAIVVPHIASASKW 327
           V+DE A++  L++  +     DVFE E + +        P L    N +  PHI SA + 
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRA 299
Query: 328 TREGMATLAALNVLGKIKG 346
            R  +   AA N+L  + G
Sbjct: 300 VRLEIERCAAQNILQALAG 318

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 113/252 (44%), Gaps = 21/252 (8%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           VG + VD+  A +  I V  TPGV                 RR+ + D  +R G +    
Sbjct: 102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG- 160
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
             L +G+  KG+ +GV+G G+IG A A    E F  ++ Y++    +             
Sbjct: 161 EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGXSVRYWNRSTLS------------- 206
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                  V W    S  ++ R++DV+++       T ++++   L  +  E I+VN +RG
Sbjct: 207 ------GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT 334
            V+DE AL+E LK   +   GLDVF +EP ++       N ++ PH  SA+  TR     
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLXPHQGSATVETRXAXGK 320
Query: 335 LAALNVLGKIKG 346
           L   N+     G
Sbjct: 321 LVLANLAAHFAG 332

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 37/288 (12%)
Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXX 123
           DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI + N P       
Sbjct: 46  DGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAI 105
Query: 124 XXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
                       R + +    ++AG Y+      F+G  L  QTVGV+G G IG   A  
Sbjct: 106 AEFALTDTLYLLRNMGKVQAQLQAGDYEK--AGTFIGKELGQQTVGVMGTGHIGQV-AIK 162
Query: 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243
           + +GF   +I YD Y                   G+ P       S++++ +++DVI LH
Sbjct: 163 LFKGFGAKVIAYDPY----------------PMKGDHPDF--DYVSLEDLFKQSDVIDLH 204
Query: 244 -PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE 302
            P +++ T H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +E E
Sbjct: 205 VPGIEQNT-HIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE 263
Query: 303 -----------PYMKPGLSE---MKNAIVVPHIASASKWTREGMATLA 336
                       +  P   E   M N ++ PHIA  ++     M   +
Sbjct: 264 TEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFS 311

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 91.7 bits (226), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 121/275 (44%), Gaps = 36/275 (13%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K     +VG++++D++   K GI V + P                   +R+   ++  R 
Sbjct: 66  KLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIED--RV 123
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
              +    +  +   L   T+GVIG GRIGS  A   +  F   ++ YD+ +   L++  
Sbjct: 124 KKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGL-AFGXKVLCYDVVKREDLKEKG 182
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
             Y                 +S+DE+L+E+DVISLH    K T+H IN+ER++  K    
Sbjct: 183 CVY-----------------TSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVY 225
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--------KPGLSEMK------ 313
           L+N +RG V+D  AL    ++     +GLDVFEDE  +        K     +K      
Sbjct: 226 LINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELAC 285
Query: 314 --NAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
             N I+ PHIA  +  + E +       V   +KG
Sbjct: 286 KDNVIITPHIAYYTDKSLERIREETVKVVKAFVKG 320

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 294
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 295 GSTQEAQENI----GLEVAGKLIKYSDNGS 320

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 120/270 (44%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 294
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 295 GSTQEAQENI----GLEVAGKLIKYSDNGS 320

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 65/227 (28%), Positives = 109/227 (48%), Gaps = 35/227 (15%)
Query: 155 PNLFVGNLLKGQTVGVIGAGRIG---SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
           PN  +G +LKGQT+G+ G G+IG   + Y R     F MN++ +    +           
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR----AFGMNVLVWGRENSK---------- 195
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
           +  +A+G     +  A S D +  ++DV+S+H  L+  T  +I    L  MK  A+ VN 
Sbjct: 196 ERARADG-----FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNT 250
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTRE 330
           SR  +++E  +V  L +       +DVFE EP ++   L  M+N I  PHI    + + E
Sbjct: 251 SRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYE 310
Query: 331 GMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSK 377
               +A  N+L  ++     GN + V       A P A +P+++ ++
Sbjct: 311 MYFGIAFQNILDILQ-----GNVDSV-------ANPTALAPALIRAE 345

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 118/261 (45%), Gaps = 25/261 (9%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   +G +N+D   A K  I V   PG                  R++  +    ++
Sbjct: 70  KIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKS 129
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G++         G  L G+T+G++G GRIG+    ++     M ++ YD+       + +
Sbjct: 130 GIFKK-----IEGLELAGKTIGIVGFGRIGTKVG-IIANAMGMKVLAYDILDIREKAEKI 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A                +A S++E+L+ +DVISLH  + K    +I+  +   MK   I
Sbjct: 184 NA----------------KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASA 324
           +VN SR   ++  AL++++K+  ++    DVF +EP  +     L + +  IV  HI + 
Sbjct: 228 IVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQ 287
Query: 325 SKWTREGMATLAALNVLGKIK 345
           +K  ++ +A +   N+L  +K
Sbjct: 288 TKEAQKRVAEMTTQNLLNAMK 308

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 118/270 (43%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A     +G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 77  AIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 136
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 137 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 187
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 188 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 234
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI 
Sbjct: 235 INASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIG 293
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 294 GSTQEAQENI----GLEVAGKLIKYSDNGS 319

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 79.3 bits (194), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 72  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 131
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           + +      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 132 VGNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 182
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 183 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 229
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L+E  N ++ PHI 
Sbjct: 230 INASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSP-LAEFDNVLLTPHIG 288
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 289 GSTQEAQENI----GLEVAGKLIKYSDNGS 314

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 79.0 bits (193), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 114/270 (42%), Gaps = 33/270 (12%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A     +G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE------PYMKPGLSEMKNAIVVPHIA 322
           +N SRG V+D  AL + L    +    +DVF  E      P+  P L E  N ++ PHI 
Sbjct: 236 INASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSP-LCEFDNVLLTPHIG 294
Query: 323 SASKWTREGMATLAALNVLGKIKGYPIWGN 352
            +++  +E +     L V GK+  Y   G+
Sbjct: 295 GSTQEAQENI----GLEVAGKLIKYSDNGS 320

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 58/101 (57%), Gaps = 5/101 (4%)
Query: 229 SMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
           S++ +L EADVISLH  L++     T HL+++ RLA ++    LVN SRG V+D  AL  
Sbjct: 160 SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRR 219
Query: 285 HLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASAS 325
            L+      V LDV+E EP   P L+  +  I  PHIA  S
Sbjct: 220 LLEGGADLEVALDVWEGEPQADPELA-ARCLIATPHIAGYS 259

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/178 (31%), Positives = 87/178 (48%), Gaps = 28/178 (15%)
Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+ +T+G++G G +GS   +  +E   +  +  D  +A R ++     G F      
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRL-QTRLEALGIRTLLCDPPRAARGDE-----GDF------ 161
Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
                    ++DE+++EADV++ H  L K     T HL ++  +  +K  AIL+N  RGP
Sbjct: 162 --------RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA 333
           V+D  AL+  L       V LDV+E EP +   L E  + I   HIA    +T EG A
Sbjct: 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIAG---YTLEGKA 267

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 34/193 (17%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++  TVGV+G GRIG   A++   G    +I  D+++   +E + T              
Sbjct: 144 VRNCTVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCTQV------------ 190
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
                 S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A+
Sbjct: 191 ------SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAV 244
Query: 283 VEHLKQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASKW 327
           +E ++   +   G DV + E               P  +  +      ++ PH+ S +  
Sbjct: 245 IEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDE 304
Query: 328 TREGMATLAALNV 340
             + M  ++  N+
Sbjct: 305 AVKNMVEVSYQNL 317

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 168 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 214
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 215 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 272 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/165 (29%), Positives = 84/165 (50%), Gaps = 18/165 (10%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 208
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 209 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPG-LSEMKNAIVVPHIASAS 325
           +V+ ++   +     DV++ +P  K      M N  + PH +  +
Sbjct: 266 VVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 65.1 bits (157), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 207
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 267
Query: 283 VEHLKQNPMFRVGLDVFEDEP 303
              L+   +   G DV+  +P
Sbjct: 268 AAALESGQLRGYGGDVWFPQP 288

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 14/141 (9%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 208
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +     +
Sbjct: 209 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDV 268
Query: 283 VEHLKQNPMFRVGLDVFEDEP 303
              L+   +   G DV+  +P
Sbjct: 269 AAALESGQLRGYGGDVWFPQP 289

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 62.0 bits (149), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 35/265 (13%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 122 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 179 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 231
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 232 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIA--SA 324
           RG + D  A+V  L+   +     DV+       D P+       M +  + PHI+  S 
Sbjct: 284 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT-----MPHNGMTPHISGTSL 338
Query: 325 SKWTREGMATLAALNVLGKIKGYPI 349
           S  TR    T   L      +G PI
Sbjct: 339 SAQTRYAAGTREILECY--FEGRPI 361

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 109/265 (41%), Gaps = 35/265 (13%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA    I V                       R  + + ++ R G   GW 
Sbjct: 123 IGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V     
Sbjct: 180 IADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK--- 232
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN +
Sbjct: 233 ------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF------EDEPYMKPGLSEMKNAIVVPHIA--SA 324
           RG + D  A+V  L+   +     DV+       D P+       M +  + PHI+  S 
Sbjct: 285 RGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRT-----MPHNGMTPHISGTSL 339
Query: 325 SKWTREGMATLAALNVLGKIKGYPI 349
           S  TR    T   L      +G PI
Sbjct: 340 SAQTRYAAGTREILECY--FEGRPI 362

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 136 RRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
           +RI++  E  + G Y  D  +P      L++G+ V V+G G IG                
Sbjct: 99  KRIIQYGEKXKRGDYGRDVEIP------LIQGEKVAVLGLGEIG---------------- 136
Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEVLREADVISLHPVLDKTTY 251
                  TR+ K + A G  ++     P    W+  +S++E LREA        L+K T 
Sbjct: 137 -------TRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTR 189
Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
            L+  + LA   ++A+ VN  R  V+D   ++  LK+ P F    DV+
Sbjct: 190 GLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 122 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 229
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 230 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 337

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASAS 325
           RG + D  A+   L+   +     DV+  +P  K  P  +   N +  PHI+  +
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGM-TPHISGTT 338

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 1/101 (0%)
Query: 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY- 304
           L  TT+HL + E     K++ +L+N  RGP +D  AL+  L  + +    LDV E EP  
Sbjct: 201 LTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLP 260
Query: 305 MKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK 345
               L +  + ++ PHI+      R  +  + A N    +K
Sbjct: 261 TDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVK 301

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 55/193 (28%), Positives = 88/193 (45%), Gaps = 26/193 (13%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           LKG+T+ ++G G IG   A    + F M ++       +R  +    + Q  +       
Sbjct: 138 LKGRTLLILGTGSIGQHIAHTG-KHFGMKVL-----GVSRSGRERAGFDQVYQL------ 185
Query: 223 TWKRASSMDEVLREADVI-SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
                 +++++L +ADVI S+ P   + T+HL    R    K  AIL N  RG  I+E  
Sbjct: 186 -----PALNKMLAQADVIVSVLPA-TRETHHLFTASRFEHCKPGAILFNVGRGNAINEGD 239
Query: 282 LVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM---KNAIVVPHIASASKWTREGMATLAAL 338
           L+  L+   +    LDVFE EP   P  S +    N I+ PH ++ S    + +A +   
Sbjct: 240 LLTALRTGKLGMAVLDVFEQEPL--PADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVR 295
Query: 339 NVLGKIKGYPIWG 351
           N +  I G P+ G
Sbjct: 296 NYIRFIDGQPLDG 308

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	386
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	1e-111
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	1e-111
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	1e-107
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-107
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	1e-105
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	1e-102
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-99
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	2e-95
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	3e-95
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	4e-93
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	1e-87
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	3e-87
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	6e-85
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	2e-83
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	1e-82
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	5e-82
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	3e-80
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	3e-79
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	2e-77
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	1e-76
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	1e-75
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	1e-72
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	1e-72
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	4e-71
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	4e-68
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	3e-65
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	3e-65
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	1e-62
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	3e-60
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	6e-58
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	2e-31
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	2e-29
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	2e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  326 bits (839), Expect = e-111
 Identities = 88/342 (25%), Positives = 156/342 (45%), Gaps = 23/342 (6%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLPEA-AMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P  +T  TAE+A  L L +
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGS 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG A A+   +GF M++ Y
Sbjct: 116 ARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDY 174

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +D ++                ++ E         S+D +L  +   SL+      T +  
Sbjct: 175 FDTHR--------------ASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 220

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DVF  EP +  G  ++ N
Sbjct: 221 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPN 280

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             + PHI SA+   RE MA  A   +     G  +      +
Sbjct: 281 TFLFPHIGSAATQAREDMAHQANDLIDALFGGADM---SYAL 319

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  326 bits (839), Expect = e-111
 Identities = 128/356 (35%), Positives = 196/356 (55%), Gaps = 30/356 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E +  VE+    +  +  E ++  + +  D ++  L+E  
Sbjct: 2   KPKVFITREIP-EVGIKML-EDEFEVEVW-GDEKEIPREILLKKVKE-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +F    +   +  +N AVGY+N+D+  A K GI V NTP VLT+ TA+LA +L LA 
Sbjct: 58  DKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115

Query: 135 ARRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           AR +V+ D F+R+G        W P  F+G  + G+T+G+IG GRIG A A+   +GF M
Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRA-KGFNM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +   +E+ + A                    ++++LRE+D + L   L + T
Sbjct: 175 RILYYSRTRKEEVERELNA----------------EFKPLEDLLRESDFVVLAVPLTRET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
           YHLIN+ERL  MKK AIL+N +RG V+D  ALV+ LK+  +   GLDVFE+EPY    L 
Sbjct: 219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELF 278

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQP 366
           ++ N ++ PHI SAS   REGMA L A N++   +G      P  V   + +  +P
Sbjct: 279 KLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIP---PTLVNREVIKIRKP 331

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  317 bits (814), Expect = e-107
 Identities = 105/347 (30%), Positives = 162/347 (46%), Gaps = 25/347 (7%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
           P    +V  T+ +P       L    DC VE        +  +++   +     G++  L
Sbjct: 5   PVRLMKVFVTRRIP-AEGRVALARAADCEVEQ-WDSDEPIPAKELERGVAG-AHGLLCLL 61

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
           ++   + +  A   A  K  S M+VG +++ ++   K GI VG TP VLT+TTAELA SL
Sbjct: 62  SDHVDKRILDAAG-ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSL 120

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            L   RR+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR +   F +
Sbjct: 121 LLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK-PFGV 179

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
               Y         +    +             +    S  E+  ++D I +   L   T
Sbjct: 180 QRFLYT--GRQPRPEEAAEFQ----------AEFV---STPELAAQSDFIVVACSLTPAT 224

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGL 309
             L NK+    MK+ A+ +N SRG V+++  L + L    +   GLDV   EP      L
Sbjct: 225 EGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPL 284

Query: 310 SEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             +KN +++PHI SA+  TR  M+ LAA N+L  ++G P+   P+++
Sbjct: 285 LTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPM---PSEL 328

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  317 bits (814), Expect = e-107
 Identities = 90/342 (26%), Positives = 157/342 (45%), Gaps = 25/342 (7%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             +    +       I   + Q   +E+   + T+L+   I +      + +    TE  
Sbjct: 28  IQKAFLCRRFTPA--IEAELRQRFDLEV-NLEDTVLTPSGIASRAHG-AEVLFVTATEAI 83

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +   L   G K  + ++VGY+++D+ AA   GI V +TP VL++  AE+A  L L A
Sbjct: 84  TAEVIRKLQ-PGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNA 142

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RR  EAD  +R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y
Sbjct: 143 CRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRA-RGFGLAIHY 201

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++  + +   +    Y                  ++D +L  +D+  +           +
Sbjct: 202 HNRTRLSHALEEGAIY----------------HDTLDSLLGASDIFLIAAPGRPELKGFL 245

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           + +R+A + + A+++N SRG +I++ AL+E L+   +F  GLDVF +EP + P    + N
Sbjct: 246 DHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDN 305

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             + PHI SA+  TR+ M  L    +    +        N +
Sbjct: 306 IFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVP---DNLI 344

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  311 bits (799), Expect = e-105
 Identities = 120/341 (35%), Positives = 183/341 (53%), Gaps = 33/341 (9%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +P  + ++ L E+    E+   +   L   +++  +     G+I  + +    
Sbjct: 2   RVLVTRTLP-GKALDRLRERGL--EVEVHRGLFLPKAELLKRVEG-AVGLIPTVEDRIDA 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
            +         K  +  +VG ++VD+ AA + GI V +TPGVLTE TA+L  +L LA AR
Sbjct: 58  EVMDRAKGL--KVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+     F M ++Y+ 
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA-LAFGMRVVYHA 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                R  K               P  +    S++E+L+EADV+SLH  L   T+ L+N+
Sbjct: 175 -----RTPK-------------PLPYPFL---SLEELLKEADVVSLHTPLTPETHRLLNR 213

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNA 315
           ERL  MK+ AIL+N +RG ++D  ALVE L+   +F  GLDV + EP      L  + NA
Sbjct: 214 ERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNA 272

Query: 316 IVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
           ++ PHI SA + TRE MA +A  N+L  ++G      PN V
Sbjct: 273 VITPHIGSAGRTTRERMAEVAVENLLAVLEGREP---PNPV 310

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  305 bits (784), Expect = e-102
 Identities = 97/350 (27%), Positives = 152/350 (43%), Gaps = 34/350 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             ++V T  +     + LL    C +    Q  + L+ E+I+    D    ++  + +  
Sbjct: 2   LPKLVITHRVHE-EILQLL-APHCELITN-QTDSTLTREEILRRCRD-AQAMMAFMPDRV 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
                 A      +       G++N DV+A    G+ +   P +LT  TAELA  L++  
Sbjct: 58  DADFLQACPEL--RVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            R +  AD F+R+G + GW P  F G  L   TVG +G G IG A A  +  G+   L Y
Sbjct: 116 GRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQY 173

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++                 L    EQ +  ++  +  E+   +D I L   L+  T HL+
Sbjct: 174 HEAKA--------------LDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLV 218

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-------- 306
           N E LA ++  A+LVN  RG V+DE A++  L++  +     DVFE E + +        
Sbjct: 219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQID 278

Query: 307 PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
           P L    N +  PHI SA +  R  +   AA N+L  + G       N V
Sbjct: 279 PALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERP---INAV 325

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  298 bits (765), Expect = 1e-99
 Identities = 82/323 (25%), Positives = 136/323 (42%), Gaps = 25/323 (7%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGG 87
            +Q   V            + +        + +I      G  +  W   L + L  +  
Sbjct: 23  FQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP-SSL 81

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G     T++LA  L L+  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141

Query: 148 GLYDGWLPNLF----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +           +  +G  +G +G G I    AR  V G  M L+YYD+      
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP---- 197

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 198 ----------ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIAS 323
             + +VN +RGPVI + AL+  LK   +   GLDV E EP +   L EMK+  +  HI  
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVTLTTHIGG 307

Query: 324 ASKWTREGMATLAALNVLGKIKG 346
            +  T      L   N+   +  
Sbjct: 308 VAIETFHEFERLTMTNIDRFLLQ 330

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  287 bits (737), Expect = 2e-95
 Identities = 97/346 (28%), Positives = 156/346 (45%), Gaps = 34/346 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V     M     +  L ++   VEI        S E++  +IG   DG+I   T   
Sbjct: 2   RPKVGVLLKMKRE-ALEEL-KKYADVEIILY----PSGEELKGVIGR-FDGIIVSPTTKI 54

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +     R   K  S  + GY+N+D+  A K GI V    G+L+E  AE    L +  
Sbjct: 55  TREVLENAERL--KVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINL 112

Query: 135 ARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
            R+I  AD+F+R G ++              L G+ VG++G G IG A AR +   F + 
Sbjct: 113 MRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRL-IPFGVK 171

Query: 192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251
           L Y+  ++   +EK + A                R   +DE+L ++D++ L   L + TY
Sbjct: 172 LYYWSRHRKVNVEKELKA----------------RYMDIDELLEKSDIVILALPLTRDTY 215

Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL-S 310
           H+IN+ER+  ++    LVN  RG ++DE A+ E +KQ  +     DVFE EP  +  L  
Sbjct: 216 HIINEERVKKLEG-KYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFK 274

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
                ++ PH A  +   +E +   A  N+L  ++G       + V
Sbjct: 275 YEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVP---EDLV 317

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  287 bits (736), Expect = 3e-95
 Identities = 91/346 (26%), Positives = 148/346 (42%), Gaps = 32/346 (9%)

Query: 11  NPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
             N K  ++  +PM    ++   ++++  V    Q         + A +      V    
Sbjct: 26  FRNVKPDLLLVEPMM--PFVMDELQRNYSVHRLYQA---ADRPALEAALPS-IRAVATGG 79

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
                      L        +   VG + VD+  A +  I V  TPGVL +  A+L  +L
Sbjct: 80  GAGLSNEWMEKLPSL--GIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIAL 137

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            LA  RR+ + D  +R G +      L +G+  KG+ +GV+G G+IG A A    E F M
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAG-EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGM 195

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           ++ Y++     R                   V W    S  ++ R++DV+++       T
Sbjct: 196 SVRYWN-----RSTL--------------SGVDWIAHQSPVDLARDSDVLAVCVAASAAT 236

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLS 310
            ++++   L  +  E I+VN +RG V+DE AL+E LK   +   GLDVF +EP ++    
Sbjct: 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFH 296

Query: 311 EMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
              N +++PH  SA+  TR  M  L   N+     G      PN V
Sbjct: 297 TTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKA---PNTV 339

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  281 bits (721), Expect = 4e-93
 Identities = 95/342 (27%), Positives = 157/342 (45%), Gaps = 32/342 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
              V+   PM    ++   +++  ++    +  T  +  D +AL  +    V+G      
Sbjct: 23  AIGVLMMCPMST--YLEQELDKRFKL---FRYWTQPAQRDFLALQAESIRAVVGNSNAGA 77

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L  AL +   +  S+ +VG + VD+    + G+ V NTP VLT+  A+LA  L LA 
Sbjct: 78  DAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RRI E D+++R G +     +  +     G+ VG+IG GRIG A A    E F   + Y
Sbjct: 136 LRRICECDKYVRRGAWKFG--DFKLTTKFSGKRVGIIGLGRIGLAVAER-AEAFDCPISY 192

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +      R +K                  +    S+ E+   +D++ +   L   T H+I
Sbjct: 193 FS-----RSKK--------------PNTNYTYYGSVVELASNSDILVVACPLTPETTHII 233

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN 314
           N+E +  +  + +L+N  RGP +DE  LV  L +  +   GLDVFE EP +   L  ++N
Sbjct: 234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLEN 293

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
            +++PH+ S +  TR+ MA L   N+     G P+      V
Sbjct: 294 VVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPL---LTPV 332

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  267 bits (686), Expect = 1e-87
 Identities = 88/351 (25%), Positives = 145/351 (41%), Gaps = 29/351 (8%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
            +    V        T  + +L +    V  C       S ++I   + ++  G +   T
Sbjct: 18  GSHMPLVALLDGRDCTVEMPIL-KDVATVAFCDA----QSTQEIHEKVLNEAVGALMYHT 72

Query: 72  EDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS 131
                           +    +  G++N+D+ +A   GIAV N P    E TA+      
Sbjct: 73  ITLTREDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHI 130

Query: 132 LAAARRIVEADEFMRAGL----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187
           L   RR     + +R G      +           ++G+T+G+IG GR+G A A    + 
Sbjct: 131 LNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KA 189

Query: 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247
           F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH  L+
Sbjct: 190 FGFNVLFYDPY---------------LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLN 234

Query: 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP 307
           +  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E EP+   
Sbjct: 235 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 294

Query: 308 G--LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV 356
              L +  N I  PH A  S+     M   AA  +   I G       N V
Sbjct: 295 QGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCV 345

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  265 bits (680), Expect = 3e-87
 Identities = 64/310 (20%), Positives = 111/310 (35%), Gaps = 35/310 (11%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           +    + G     V   L         A + R   K    +  G +++   +     + V
Sbjct: 19  KYFKIVRGGDLGNVEAALVSRITAEELAKMPRL--KFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
               G   +  AE A +L LA  +RI++  E M+ G Y   +       L++G+ V V+G
Sbjct: 76  AGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE----IPLIQGEKVAVLG 131

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG+   +++       +  +                            W+  +S++E
Sbjct: 132 LGEIGTRVGKIL-AALGAQVRGFSRTPK--------------------EGPWRFTNSLEE 170

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
            LREA        L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F
Sbjct: 171 ALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 230

Query: 293 RVGLDVFEDEPYMKPG--LSEMKNAIVVPHIASASKWTR--EGMATLAALNVLGKIKGYP 348
               DV+              + N +  P +A      R    M   A  N++    G  
Sbjct: 231 IFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGR 290

Query: 349 IWGNPNQVEP 358
                N  + 
Sbjct: 291 P---RNIAKR 297

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  259 bits (665), Expect = 6e-85
 Identities = 105/333 (31%), Positives = 169/333 (50%), Gaps = 29/333 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V+   P+   + I +L +    V      +     + ++ L+ D  + +I +     
Sbjct: 3   RMKVLVAAPLH-EKAIQVLKDAGLEVIY----EEYPDEDRLVELVKD-VEAIIVRSKPKV 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +  +  +   K  +   VG +N+DV AA + GI V N P   + + AELA  L  + 
Sbjct: 57  TRRVIESAPKL--KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSV 114

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           AR+I  AD  MR G    W     +G  L+G+T+G+IG GRIG   A++      MN++ 
Sbjct: 115 ARKIAFADRKMREG---VWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIA-NALGMNILL 170

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y     E+                  +     ++ +L+E+DV+++H  L ++TYHLI
Sbjct: 171 YDPYPN---EERAKEVN----------GKFV---DLETLLKESDVVTIHVPLVESTYHLI 214

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMK 313
           N+ERL  MKK AIL+N SRGPV+D  ALV+ LK+  +   GLDVFE+EP  K   L++  
Sbjct: 215 NEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFD 274

Query: 314 NAIVVPHIASASKWTREGMATLAALNVLGKIKG 346
           N ++ PHI +++   +E      A  V+  +KG
Sbjct: 275 NVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  256 bits (657), Expect = 1e-82
 Identities = 70/330 (21%), Positives = 127/330 (38%), Gaps = 26/330 (7%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG-- 87
           +   +E +    + T  K           + D  D VI Q    W   L           
Sbjct: 59  LRKYLESNGHTLVVTSDKD-GPDSVFERELVD-ADVVISQPF--WPAYLTPERIAKAKNL 114

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +G ++VD+ +A    + V       + + AE    + L+  R  + + E+ R 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARK 174

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G ++     +     L+   VG + AGRIG A  R +   F ++L Y D ++        
Sbjct: 175 GGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLA-PFDVHLHYTDRHR-------- 224

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                 L  + E+ +     ++ +++    DV++L+  L   T H+IN E L   K+ A 
Sbjct: 225 ------LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAY 278

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASK 326
           +VN +RG + D  A+   L+   +     DV+  +P  K      M    + PHI+  + 
Sbjct: 279 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTL 338

Query: 327 WTREGMATLAALNVLGKIKGYPIWGNPNQV 356
             +   A      +    +G PI    ++ 
Sbjct: 339 TAQARYAAGTREILECFFEGRPI---RDEY 365

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  253 bits (648), Expect = 5e-82
 Identities = 85/319 (26%), Positives = 133/319 (41%), Gaps = 39/319 (12%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
            + +AL     DGV+     D+      AL+  G    S   VG +N+D+  A + G  +
Sbjct: 38  PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQI 96

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE AA  +    R+    DE +             +G  ++ Q VGV+G
Sbjct: 97  TNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVG 153

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG  + ++M EGF   +I YD+++   LEK                       S+D+
Sbjct: 154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKKGYYV-----------------DSLDD 195

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + ++ADVISLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255

Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIASASKWTREGMATLAAL 338
              +DV+E E  +                 L    N +V P  A  +      M   A  
Sbjct: 256 GYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFD 315

Query: 339 NVLGKIKGYPIWGNPNQVE 357
           N L  ++G         V+
Sbjct: 316 NNLELVEGKE---AETPVK 331

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  248 bits (636), Expect = 3e-80
 Identities = 66/326 (20%), Positives = 127/326 (38%), Gaps = 40/326 (12%)

Query: 47  KTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN 106
              L+ ++   +     D VI +      +       + G K       G +++D   A 
Sbjct: 31  PDYLNTKETAEMAAG-FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAK 89

Query: 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ 166
           + G  +   P       AELA + ++   R             +   +        ++  
Sbjct: 90  ELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK--VDAFMFSKEVRNC 147

Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           TVGV+G GRIG   A++   G    +I  D+++   +E + T                  
Sbjct: 148 TVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCT-Q---------------- 189

Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
             S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A++E +
Sbjct: 190 -VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248

Query: 287 KQNPMFRVGLDVFEDE---------------PYMKPGLSEMKNAIVVPHIASASKWTREG 331
           +   +   G DV + E               P  +  +      ++ PH+ S +    + 
Sbjct: 249 ESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKN 308

Query: 332 MATLAALNVLGKIKGYPIWGNPNQVE 357
           M  ++  N+    +       PN+++
Sbjct: 309 MVEVSYQNLKDLAETGDC---PNKIK 331

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  244 bits (625), Expect = 3e-79
 Identities = 68/312 (21%), Positives = 124/312 (39%), Gaps = 31/312 (9%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGY 97
           +++         V +I   + D  D        D    +       G   K    ++ G 
Sbjct: 1   LDVYVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGV 60

Query: 98  NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157
           +++DVN   +  +   N     + + AE A +L LA A+ I+E +E M+AG++       
Sbjct: 61  DHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--- 116

Query: 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN 217
               LL G+ +G++G G IG   A +  + F M +I Y                   +  
Sbjct: 117 --TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVD-------------QNV 160

Query: 218 GEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277
                      S  ++ R++D + +   L   T  ++N   LA  +K   +VN +R  V+
Sbjct: 161 DVISE------SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVV 214

Query: 278 DEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI-ASASKWTREGMATLA 336
            +  ++  LK+        DV+ +EP  +   + ++NAI+ PH+    S    +    LA
Sbjct: 215 SKPDMIGFLKERSDVWYLSDVWWNEP--EITETNLRNAILSPHVAGGMSGEIMDIAIQLA 272

Query: 337 ALNVLGKIKGYP 348
             NV    +G  
Sbjct: 273 FENVRNFFEGEG 284

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  242 bits (619), Expect = 2e-77
 Identities = 66/317 (20%), Positives = 122/317 (38%), Gaps = 32/317 (10%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGGKAFSNMA 94
           +            ++   I D    +I        +T +              K      
Sbjct: 42  QYIVTDDKEGPDCELEKHIPD-LHVLISTPFHPAYVTAE----RIKKAKNL--KLLLTAG 94

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D+ AA   G+ V    G    + AE      L   R  V     +  G ++   
Sbjct: 95  IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN-VA 153

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              +    L+G+T+G +GAGRIG    + +   F  NL+Y+D  Q              +
Sbjct: 154 GIAYRAYDLEGKTIGTVGAGRIGKLLLQRLK-PFGCNLLYHDRLQ--------------M 198

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
               E+    K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG
Sbjct: 199 APELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARG 258

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNAIVVPHIASASKWTREGM 332
            +++  A+V+ ++   +     DV++ +P  K  P    M N  + PH +  +   +   
Sbjct: 259 AIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHP-WRYMPNQAMTPHTSGTTIDAQLRY 317

Query: 333 ATLAALNVLGKIKGYPI 349
           A      +    KG   
Sbjct: 318 AAGTKDMLERYFKGEDF 334

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  240 bits (614), Expect = 1e-76
 Identities = 85/341 (24%), Positives = 140/341 (41%), Gaps = 51/341 (14%)

Query: 29  WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAAL- 82
             +LL + + +V       T+  V  + A + D  + ++      ++T      L   L 
Sbjct: 20  CFSLLQDHEVKV----FNNTVKGVGQLAARVAD-VEALVLIRERTRVTRQ----LLDRLP 70

Query: 83  -----SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
                S+ G            ++D+ A    G+ V    G      AEL  +L +AA RR
Sbjct: 71  KLKIISQTGRV----SRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRR 125

Query: 138 IVEADEFMRAG-------LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           I +    ++ G             PN  +G +LKGQT+G+ G G+IG   A      F M
Sbjct: 126 IPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGM 184

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           N++                +G+       +   +  A S D +  ++DV+S+H  L+  T
Sbjct: 185 NVL---------------VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDET 229

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-- 308
             +I    L  MK  A+ VN SR  +++E  +V  L +       +DVFE EP +  G  
Sbjct: 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEP-ILQGHT 288

Query: 309 LSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPI 349
           L  M+N I  PHI    + + E    +A  N+L  ++G   
Sbjct: 289 LLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNVD 329

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  236 bits (604), Expect = 1e-75
 Identities = 78/318 (24%), Positives = 133/318 (41%), Gaps = 39/318 (12%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E+ +       DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI +
Sbjct: 36  ENTVEWAKG-FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRL 94

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE A + +L   R + +    ++AG Y+      F+G  L  QTVGV+G
Sbjct: 95  SNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE--KAGTFIGKELGQQTVGVMG 152

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG    ++  +GF   +I YD Y           Y                  S+++
Sbjct: 153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDHPDFD-Y-----------------VSLED 193

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + +++DVI LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   + 
Sbjct: 194 LFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 253

Query: 293 RVGLDVFEDEPYMKPG--------------LSEMKNAIVVPHIASASKWTREGMATLAAL 338
            VG+D +E E                    L  M N ++ PHIA  ++     M   +  
Sbjct: 254 GVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQ 313

Query: 339 NVLGKIKGYPIWGNPNQV 356
           +++  +          +V
Sbjct: 314 HLVDFLTKGET---STEV 328

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  229 bits (586), Expect = 1e-72
 Identities = 96/330 (29%), Positives = 152/330 (46%), Gaps = 47/330 (14%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS-- 83
             +L +   +V      K  LS E++IA + D C+G+I     ++T D    +  A    
Sbjct: 40  RKILQDGGLQVVE----KQNLSKEELIAELQD-CEGLIVRSATKVTAD----VINAAEKL 90

Query: 84  ----RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
               RAG         G +NVD+ AA + GI V NTP   + + AEL   + +  AR+I 
Sbjct: 91  QVVGRAG--------TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIP 142

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
           +A   M+ G    W    F+G  L G+T+G++G GRIG   A  M + F M  I YD   
Sbjct: 143 QATASMKDG---KWERKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPII 198

Query: 200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259
           +    +   ++G          V       ++E+    D I++H  L  +T  L+N    
Sbjct: 199 S---PEVSASFG----------VQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTF 242

Query: 260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVP 319
           A  KK   +VNC+RG ++DE AL+  L+        LDVF +EP     L + +N I  P
Sbjct: 243 AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCP 302

Query: 320 HIASASKWTREGMATLAALNVLGKIKGYPI 349
           H+ +++K  +       A+  +  +KG  +
Sbjct: 303 HLGASTKEAQSRCGEEIAVQFVDMVKGKSL 332

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  228 bits (583), Expect = 1e-72
 Identities = 80/332 (24%), Positives = 152/332 (45%), Gaps = 50/332 (15%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           I  L E+  +V+        +S E+++ +IG+  D ++     ++T+   + +       
Sbjct: 19  IKTLREKGIQVDY----MPEISKEELLNIIGN-YDIIVVRSRTKVTK---DVIEKGKKLK 70

Query: 82  -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
            ++RAG        +G +N+D   A K  I V   PG  T++  EL   L +AAAR++  
Sbjct: 71  IIARAG--------IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT 122

Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
           +    ++G    +      G  L G+T+G++G GRIG+    +      M ++ YD+   
Sbjct: 123 SMALAKSG---IF--KKIEGLELAGKTIGIVGFGRIGTKVGIIA-NAMGMKVLAYDILDI 176

Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260
               +                       S++E+L+ +DVISLH  + K    +I+  +  
Sbjct: 177 ---REKAEKIN----------AKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFE 220

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG---LSEMKNAIV 317
            MK   I+VN SR   ++  AL++++K+  ++    DVF +EP  +     L + +  IV
Sbjct: 221 LMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIV 280

Query: 318 VPHIASASKWTREGMATLAALNVLGKIKGYPI 349
             HI + +K  ++ +A +   N+L  +K   +
Sbjct: 281 TTHIGAQTKEAQKRVAEMTTQNLLNAMKELGM 312

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  231 bits (590), Expect = 4e-71
 Identities = 92/341 (26%), Positives = 150/341 (43%), Gaps = 36/341 (10%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 20  ALGDQVEVRW----VDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVAR 72

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P     + AE A +L LAA+R+I  AD  +R      
Sbjct: 73  AGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH---T 129

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
           W  + F G  + G+TVGV+G GRIG   A+ +   F   ++ YD         +V+    
Sbjct: 130 WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYD--------PYVSP--A 178

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                G + ++       D++L  AD IS+H      T  LI+KE LA  K   I+VN +
Sbjct: 179 RAAQLGIELLSL------DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM 332
           RG ++DE AL + +    +   GLDVF  EP     L E+   +V PH+ +++   ++  
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRA 292

Query: 333 ATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSI 373
            T  A +V   + G  +   P+ V      N      +  +
Sbjct: 293 GTDVAESVRLALAGEFV---PDAV------NVGGGVVNEEV 324

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  218 bits (557), Expect = 4e-68
 Identities = 77/329 (23%), Positives = 128/329 (38%), Gaps = 52/329 (15%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAA-----LSRAGGK 88
            E+ T          +   I D  D +I        +T+   E +  A     +  AG  
Sbjct: 39  HELITTSDKEGGNSVLDQHIPD-ADIIITTPFHPAYITK---ERIDKAKKLKLVVVAG-- 92

Query: 89  AFSNMAVGYNNVDVNAANKYG--IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
                 VG +++D++  N+ G  I+V    G    + AE      L   R  V A E + 
Sbjct: 93  ------VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQII 146

Query: 147 AGLYDGWLPNLFV--GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                 W           ++G+T+  IGAGRIG      +V  F    + Y  YQA   +
Sbjct: 147 NH---DWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLV-PFNPKELLYYDYQALPKD 202

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                         E+ V  +R  +++E++ +AD+++++  L   T  LINKE L+  KK
Sbjct: 203 A-------------EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKN-----AIV 317
            A LVN +RG +     +   L+   +   G DV+  +P  K  P   +M+N       +
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHP-WRDMRNKYGAGNAM 308

Query: 318 VPHIASASKWTREGMATLAALNVLGKIKG 346
            PH +  +   +   A      +     G
Sbjct: 309 TPHYSGTTLDAQTRYAQGTVNILESFFTG 337

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  212 bits (541), Expect = 3e-65
 Identities = 78/302 (25%), Positives = 120/302 (39%), Gaps = 53/302 (17%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAFSNM 93
              K  L  E +   I D    +       LTED    +  A                  
Sbjct: 30  EFHKGALDDEQLKESIRD-AHFIGLRSRTHLTED----VINAAEKLVAIGAFA------- 77

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
            +G N VD++AA K GI V N P   T + AEL     L   R + EA+     G     
Sbjct: 78  -IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG---VG 133

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                     +G+ +G+IG G IG+    +  E   M + +YD+     L          
Sbjct: 134 NKLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLG--------- 183

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
              N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N SR
Sbjct: 184 ---NATQVQ------HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR 234

Query: 274 GPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASASKWT 328
           G V+D  AL + L    +    +DVF  EP          L+E  N ++ PHI   S  T
Sbjct: 235 GTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG-GS--T 291

Query: 329 RE 330
           +E
Sbjct: 292 QE 293

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  212 bits (542), Expect = 3e-65
 Identities = 91/305 (29%), Positives = 131/305 (42%), Gaps = 53/305 (17%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAF 90
              T     L   D+I  I      +      QLTE+    +FAA +             
Sbjct: 38  TNVTHLPKALDKADLIKAISS-AHIIGIRSRTQLTEE----IFAAANRLIAVGCFS---- 88

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
               VG N V++ AA K GI V N P   T + AEL     +   RRI        AG  
Sbjct: 89  ----VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG-- 142

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW         ++G+T+G++G G IGS    +  E   M + YYD     +L+      
Sbjct: 143 -GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLA-ESLGMTVRYYDTS--DKLQY----- 193

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
                 N +       A+S+DE+L+ +DV+SLH    K+T  LI + +L  MKK A L+N
Sbjct: 194 -----GNVKP------AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPG-----LSEMKNAIVVPHIASAS 325
            +RG  +D  AL + L++  +    +DVF  EP          L  ++N I+ PHI   S
Sbjct: 243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIG-GS 301

Query: 326 KWTRE 330
             T E
Sbjct: 302 --TEE 304

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  202 bits (517), Expect = 1e-62
 Identities = 63/301 (20%), Positives = 108/301 (35%), Gaps = 38/301 (12%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAA 105
           T      + A   D+ + + G         L   L+R     K    ++ G + + + A 
Sbjct: 26  TFKDAAAVTAADYDQIEVMYG-----NHPLLKTILARPTNQLKFVQVISAGVDYLPLKAL 80

Query: 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
              G+ V NT G+  +  +E   +  L+  R    A    R              + L G
Sbjct: 81  QAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA---RQWALPMTTSTLTG 137

Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           Q + + G G+IG + A        M++I  +       + F                   
Sbjct: 138 QQLLIYGTGQIGQSLAAKA-SALGMHVIGVN-TTGHPADHFHETVA-------------- 181

Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
             ++  + L  A+ I     L  TT+HL + E     K++ +L+N  RGP +D  AL+  
Sbjct: 182 -FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240

Query: 286 LKQNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALN 339
           L  + +    LDV E EP     L          + ++ PHI+      R  +  + A N
Sbjct: 241 LDHHQLSMAALDVTEPEP-----LPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAAN 295

Query: 340 V 340
            
Sbjct: 296 F 296

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  198 bits (505), Expect = 3e-60
 Identities = 73/292 (25%), Positives = 110/292 (37%), Gaps = 53/292 (18%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D++   + GIA  + PG       +      LA A                   
Sbjct: 67  IGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE------------------ 108

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L  +T GV+GAG++G     ++  G    ++  D  +  R            
Sbjct: 109 ---VRGADLAERTYGVVGAGQVGGRLVEVL-RGLGWKVLVCDPPRQAR------------ 152

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
                + V      S++ +L EADVISLH       +  T HL+++ RLA ++    LVN
Sbjct: 153 -EPDGEFV------SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
            SRG V+D  AL   L+      V LDV+E EP   P L   +  I  PHIA     + E
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPEL-AARCLIATPHIA-GY--SLE 261

Query: 331 G--MATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALG 380
           G    T          +G     +   V P           +P    + AL 
Sbjct: 262 GKLRGTAQIYQAYCAWRGIAERVSLQDVLPETWLAG--LQLNPGCDPAWALA 311

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  192 bits (490), Expect = 6e-58
 Identities = 63/241 (26%), Positives = 94/241 (39%), Gaps = 49/241 (20%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD     + GI     PG       E   S  L  A R                 
Sbjct: 70  AGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER----------------- 112

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L+ +T+G++G G +GS     + E   +  +  D  +A R            
Sbjct: 113 ----DGFSLRDRTIGIVGVGNVGSRLQTRL-EALGIRTLLCDPPRAAR------------ 155

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
             +           ++DE+++EADV++ H          T HL ++  +  +K  AIL+N
Sbjct: 156 -GDEGDFR------TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE 330
             RGPV+D  AL+  L       V LDV+E EP +   L E  + I   HIA     T E
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD-IGTSHIA-GY--TLE 264

Query: 331 G 331
           G
Sbjct: 265 G 265

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  120 bits (304), Expect = 2e-31
 Identities = 59/257 (22%), Positives = 99/257 (38%), Gaps = 40/257 (15%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
              + N  G+     +E      L+  R++    E  +  L   W         LKG+T+
Sbjct: 89  DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRL---WQS--HPYQGLKGRTL 143

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
            ++G G IG   A    + F M ++            F   Y                  
Sbjct: 144 LILGTGSIGQHIAHTG-KHFGMKVLGVS-RSGRERAGFDQVYQ---------------LP 186

Query: 229 SMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           +++++L +AD ++S+ P   + T+HL    R    K  AIL N  RG  I+E  L+  L+
Sbjct: 187 ALNKMLAQADVIVSVLP-ATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245

Query: 288 QNPMFRVGLDVFEDEPYMKPGLSE------MKNAIVVPHIASASKWTREGMATLAALNVL 341
              +    LDVFE EP     L          N I+ PH ++ S    + +A +   N +
Sbjct: 246 TGKLGMAVLDVFEQEP-----LPADSPLWGQPNLIITPHNSAYS--FPDDVAQIFVRNYI 298

Query: 342 GKIKGYPIWGNPNQVEP 358
             I G P+     +++ 
Sbjct: 299 RFIDGQPL---DGKIDF 312

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  115 bits (289), Expect = 2e-29
 Identities = 54/284 (19%), Positives = 91/284 (32%), Gaps = 46/284 (16%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEA 141
           KA   +  G + +         +   + P        +     E A S  L   RR  + 
Sbjct: 61  KAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDY 120

Query: 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201
                  L   W P        +  +VG++GAG +G+  A  +   +   L  +      
Sbjct: 121 QALKNQAL---WKP--LPEYTREEFSVGIMGAGVLGAKVAESLQ-AWGFPLRCWS-RSRK 173

Query: 202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLA 260
                 +  G                  +   L +   +I+L P     T  +IN E L 
Sbjct: 174 SWPGVESYVG---------------REELRAFLNQTRVLINLLP-NTAQTVGIINSELLD 217

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE------MKN 314
            +   A ++N +RG  + E  L+  L    +    LDVF  EP     L +         
Sbjct: 218 QLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEP-----LPQESPLWRHPR 272

Query: 315 AIVVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEP 358
             + PHIA+ +           +  +    KG P+     QV+ 
Sbjct: 273 VAMTPHIAAVT--RPAEAIDYISRTITQLEKGEPV---TGQVDR 311

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           + G  V V+G GR+G + AR         +                     +   G +P 
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLAR---------IAEMGMEPF 202

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
              +     + LR+ DV             ++    LA M     +++ +  P   +   
Sbjct: 203 HISK---AAQELRDVDVCINT-----IPALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254

Query: 283 VEHLKQNPMFRVGL 296
            E      +   GL
Sbjct: 255 AEKRGIKALLVPGL 268

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 69/464 (14%), Positives = 129/464 (27%), Gaps = 154/464 (33%)

Query: 14  GK----------YRVVSTKPMPGTRWINL--------LIEQDCRVEICTQ-KKTILSVED 54
           GK          Y+V          W+NL        ++E     ++  Q      S  D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTSRSD 218

Query: 55  IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV-DVNAANKYGIAVG 113
             + I  +   +  +L       L  +      K + N  +   NV +  A N + +   
Sbjct: 219 HSSNIKLRIHSIQAELRR-----LLKS------KPYENCLLVLLNVQNAKAWNAFNL--- 264

Query: 114 NTPG--VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-------VGNL-- 162
                 +L  TT     +  L+AA     + +     L    + +L          +L  
Sbjct: 265 ---SCKILL-TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 163 --LKG--QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG 218
             L    + + +I             +         +      +L   + +    L+   
Sbjct: 321 EVLTTNPRRLSIIAE----------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 219 EQ---------------P-----VTWKRASS------MDEVLREADV--------ISLHP 244
            +               P     + W           ++++ + + V        IS+  
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 245 VLDKTTYHLINKERLATMKKEAILVN--------CSRGPVIDEVA------LVEHLKQ-- 288
           +  +    L N+  L        +V+         S   +   +       +  HLK   
Sbjct: 431 IYLELKVKLENEYAL-----HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 289 ----NPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKI 344
                 +FR    VF D          ++  I       ++ W   G + L  L  L   
Sbjct: 486 HPERMTLFR---MVFLD-------FRFLEQKI----RHDSTAWNASG-SILNTLQQLKFY 530

Query: 345 KGYPIWGN-P------NQVEPFLNENAQPPAASPSIVNSKALGL 381
           K Y I  N P      N +  FL      P    +++ SK   L
Sbjct: 531 KPY-ICDNDPKYERLVNAILDFL------PKIEENLICSKYTDL 567

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	386
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.95
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.91
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.9
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.89
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.8
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.79
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.76
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.7
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.69
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.65
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.65
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.61
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.27
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.26
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.26
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.25
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.24
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.23
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.22
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.22
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.2
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.18
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.17
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.17
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.15
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.14
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.13
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.1
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.1
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.1
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.09
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.09
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.07
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.05
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.04
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.02
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.01
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.97
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.95
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.93
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.91
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.9
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.9
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.89
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.85
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.85
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.84
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.83
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.83
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.81
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.8
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.8
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.77
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.76
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.74
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.72
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.72
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.15
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.69
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.69
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.64
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.63
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.61
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.57
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.55
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.55
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.54
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.51
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.5
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.5
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.49
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.48
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.43
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.41
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.35
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.34
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.33
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.32
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.31
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.31
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.29
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.29
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.29
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.29
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.28
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.28
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.28
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.28
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.26
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.26
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.25
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.25
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.24
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.24
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.23
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.23
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.22
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.21
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.19
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.19
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.19
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.17
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.13
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.13
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.1
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.09
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.09
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.08
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.08
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.04
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.03
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.02
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.02
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.01
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.98
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	97.96
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.94
2duw_A	145	Putative COA-binding protein; ligand binding prote	97.94
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.89
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.89
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.85
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.84
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.84
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.79
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.75
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.67
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.66
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.63
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.63
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.6
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.59
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.59
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.58
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.56
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.56
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.55
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.55
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.54
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.54
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.52
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.51
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.5
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.5
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.49
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.42
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.41
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.41
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.41
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.41
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.39
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.37
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.34
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.34
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.33
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.32
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.28
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.27
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.26
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.25
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.24
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.22
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.22
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.19
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.19
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.17
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.16
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.15
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.14
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.14
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.13
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.13
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.11
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.1
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.09
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.08
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.01
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.0
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.98
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.97
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.94
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.94
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.92
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.92
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.91
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.9
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	96.9
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.89
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.87
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.86
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.86
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	96.83
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.81
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.8
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	96.8
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.79
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.79
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.77
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.74
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.73
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	96.72
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.7
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.69
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.68
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.67
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.66
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.65
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.64
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	96.64
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.62
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.61
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.56
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.56
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.55
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.51
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.48
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.43
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.42
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.39
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.39
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	96.38
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.38
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.37
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	96.37
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.36
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.35
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.35
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.34
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.32
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.29
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.28
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	96.23
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.22
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.22
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.21
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	96.18
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.16
4had_A	350	Probable oxidoreductase protein; structural genomi	96.15
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.14
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.12
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.11
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.1
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	96.04
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.04
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.04
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.04
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.02
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.0
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.0
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.0
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.0
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.0
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	95.99
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.99
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.99
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	95.99
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.96
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.96
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.94
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	95.94
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	95.91
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	95.91
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.91
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.9
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	95.89
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	95.87
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.86
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.85
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.85
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	95.85
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.85
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	95.84
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	95.84
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.84
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.79
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	95.79
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.78
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.78
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.77
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.74
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	95.74
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	95.7
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	95.67
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	95.63
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	95.62
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.62
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.62
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.61
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	95.61
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	95.6
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.58
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	95.56
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.54
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	95.53
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	95.52
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	95.52
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	95.51
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	95.51
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	95.48
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.46
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	95.46
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.44
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.42
3on5_A	362	BH1974 protein; structural genomics, joint center	95.42
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	95.4
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	95.4
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	95.39
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.38
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.37
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	95.36
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.35
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.34
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.33
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	95.33
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.31
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	95.31
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	95.31
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.3
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	95.29
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.29
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.28
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.27
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	95.25
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	95.25
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	95.24
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.23
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.22
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.22
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.2
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.2
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	95.17
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	95.16
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.15
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.13
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	95.13
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	95.12
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	95.12
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.11
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.09
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.08
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	95.07
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.07
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.07
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	95.06
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	95.06
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	95.05
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.05
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.99
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	94.97
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	94.97
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.96
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	94.95
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	94.94
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	94.94
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	94.88
4h3v_A	390	Oxidoreductase domain protein; structural genomics	94.87
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	94.81
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.81
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.79
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	94.78
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	94.77
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	94.77
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	94.76
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	94.72
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.67
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	94.66
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	94.65
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	94.65
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	94.64
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	94.62
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	94.54
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	94.53
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	94.52
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.49
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	94.41
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	94.39
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.39
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.39
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	94.33
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	94.32
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	94.32
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	94.31
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	94.31
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	94.29
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.28
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	94.27
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	94.26
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	94.23
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	94.21
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	94.21
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	94.21
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.21
3gms_A	340	Putative NADPH:quinone reductase; structural genom	94.2
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	94.19
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	94.17
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	94.13
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.12
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.12
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	94.12
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	94.1
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	94.07
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.04
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	94.03
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	94.0
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	93.96
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	93.95
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.94
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	93.93
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	93.91
1lnq_A	336	MTHK channels, potassium channel related protein;	93.9
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.84
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	93.84
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	93.79
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.76
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	93.72
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	93.71
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	93.7
4dqx_A	277	Probable oxidoreductase protein; structural genomi	93.7
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	93.67
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	93.65
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	93.65
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	93.65
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	93.65
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	93.64
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	93.6
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	93.59
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	93.51
1xq6_A	253	Unknown protein; structural genomics, protein stru	93.5
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	93.48
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	93.39
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	93.38
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	93.36
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	93.35
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	93.34
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	93.33
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	93.32
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	93.32
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	93.27
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	93.23
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	93.16
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	93.12
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	93.12
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	93.1
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	93.09
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	93.06
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	93.06
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	93.04
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	93.04
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	93.03
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	93.02
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.0
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	93.0
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	92.97
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	92.95
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	92.81
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	92.77
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	92.77
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	92.65
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	92.63
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	92.59
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	92.56
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	92.48
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	92.47

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=5.4e-69  Score=527.87  Aligned_cols=319  Identities=27%  Similarity=0.420  Sum_probs=285.5

Q ss_pred             CCCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-hccCCcEEE
Q 016620           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFS   91 (386)
Q Consensus        13 ~~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l-~~l~~k~i~   91 (386)
                      ++++|||++.+++++. .+.|++. +++++.. .+...+.+++.+.+. ++|++++...+++++++++++ ++|  |+|+
T Consensus        26 ~~~~kvlv~~~~~~~~-~~~l~~~-~~v~~~~-~~~~~~~~~l~~~~~-~~d~li~~~~~~i~~~~l~~~~~~L--k~I~   99 (345)
T 4g2n_A           26 HPIQKAFLCRRFTPAI-EAELRQR-FDLEVNL-EDTVLTPSGIASRAH-GAEVLFVTATEAITAEVIRKLQPGL--KTIA   99 (345)
T ss_dssp             -CCCEEEESSCCCHHH-HHHHHHH-SEEEECT-TCCCCCHHHHHHHTT-TCSEEEECTTSCBCHHHHHHTTTTC--CEEE
T ss_pred             CCCCEEEEeCCCCHHH-HHHHHcc-CCEEEec-CCCCCCHHHHHHHhc-CCeEEEEeCCCCCCHHHHHhhcCCc--eEEE
Confidence            5688999999998754 6777665 4665432 334568999998887 599999987788999999998 677  9999


Q ss_pred             EccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 016620           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (386)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIv  171 (386)
                      +.|+|+|+||+++|+++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|..|.+....|++++|+|||||
T Consensus       100 ~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGII  179 (345)
T 4g2n_A          100 TLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIF  179 (345)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEE
T ss_pred             EcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999888655566899999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhh
Q 016620          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (386)
Q Consensus       172 G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~  251 (386)
                      |+|.||+++|+++ ++|||+|++|||+.......           .     +.....++++++++||+|++|+|+|++|+
T Consensus       180 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~-----------~-----g~~~~~~l~ell~~sDvV~l~~Plt~~T~  242 (345)
T 4g2n_A          180 GMGRIGRAIATRA-RGFGLAIHYHNRTRLSHALE-----------E-----GAIYHDTLDSLLGASDIFLIAAPGRPELK  242 (345)
T ss_dssp             SCSHHHHHHHHHH-HTTTCEEEEECSSCCCHHHH-----------T-----TCEECSSHHHHHHTCSEEEECSCCCGGGT
T ss_pred             EeChhHHHHHHHH-HHCCCEEEEECCCCcchhhh-----------c-----CCeEeCCHHHHHhhCCEEEEecCCCHHHH
Confidence            9999999999997 79999999999986432110           0     12233599999999999999999999999


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (386)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  331 (386)
                      ++|+++.|++||+|++|||+|||++||++||+++|++|+|.||+||||++||.+++|||++|||++|||+||+|.+++++
T Consensus       243 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~~~  322 (345)
T 4g2n_A          243 GFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHETRDA  322 (345)
T ss_dssp             TCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHHHHH
T ss_pred             HHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999996668999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 016620          332 MATLAALNVLGKIKGYPIWGNPN  354 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g~~~~~~v~  354 (386)
                      +.+.+++||.+|++|+++.|.|+
T Consensus       323 ~~~~~~~ni~~~l~g~~~~~~V~  345 (345)
T 4g2n_A          323 MGWLLIQGIEALNQSDVPDNLIS  345 (345)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTBCC
T ss_pred             HHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999875

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=2.2e-68  Score=522.41  Aligned_cols=312  Identities=29%  Similarity=0.377  Sum_probs=268.3

Q ss_pred             cEEEEeCCCCc-hH-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           16 YRVVSTKPMPG-TR-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        16 ~~vlvt~~~~~-~~-~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      ||||++..-.. .. +.+.+.+.  .+++........+.+++.     ++|+++++..+++++++++++|+|  |+|++.
T Consensus         1 Mkil~~~~~~~~~p~~~e~l~~~--~~~~~~~~~~~~~~~~l~-----~ad~i~v~~~~~i~~~~l~~~p~L--k~I~~~   71 (334)
T 3kb6_A            1 MNVLFTSVPQEDVPFYQEALKDL--SLKIYTTDVSKVPENELK-----KAELISVFVYDKLTEELLSKMPRL--KLIHTR   71 (334)
T ss_dssp             -CEEECSCCTTHHHHHHHHTTTS--CEEECSSCGGGSCHHHHH-----HCSEEEECTTSCBCHHHHHTCTTC--CEEEES
T ss_pred             CEEEEeCCCcccCHHHHHHHHhC--CcEEEeCCcccCCHHHhc-----CCCEEEEeCCCCCCHHHHhcCCCC--cEEEEC
Confidence            78888653222 12 33444444  344444433334555553     489999988889999999999998  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~  173 (386)
                      |+|+|+||+++|+++||.|+|+||+++.+||||+++++|++.|++..+++.++++.|..|.  ...|++++|+|+||||+
T Consensus        72 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~--~~~~~~l~g~tvGIiG~  149 (334)
T 3kb6_A           72 SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDS--EILARELNRLTLGVIGT  149 (334)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCG--GGCBCCGGGSEEEEECC
T ss_pred             CcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhcccccccccccccccccc--ccccceecCcEEEEECc
Confidence            9999999999999999999999999999999999999999999999999999999986553  34678999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhc
Q 016620          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (386)
Q Consensus       174 G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~l  253 (386)
                      |.||+.+|+++ ++|||+|++||++.......           .      .....+++|++++||+|++|||+|++|+++
T Consensus       150 G~IG~~va~~~-~~fg~~v~~~d~~~~~~~~~-----------~------~~~~~~l~ell~~sDivslh~Plt~~T~~l  211 (334)
T 3kb6_A          150 GRIGSRVAMYG-LAFGMKVLCYDVVKREDLKE-----------K------GCVYTSLDELLKESDVISLHVPYTKETHHM  211 (334)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH-----------T------TCEECCHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             chHHHHHHHhh-cccCceeeecCCccchhhhh-----------c------CceecCHHHHHhhCCEEEEcCCCChhhccC
Confidence            99999999997 79999999999986543211           1      113579999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-C---------------CCCCCCCeEE
Q 016620          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-P---------------GLSEMKNAIV  317 (386)
Q Consensus       254 i~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~---------------~L~~~~nvil  317 (386)
                      ||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||++. +               |||++|||++
T Consensus       212 i~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvil  291 (334)
T 3kb6_A          212 INEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII  291 (334)
T ss_dssp             BCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEE
T ss_pred             cCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEE
Confidence            99999999999999999999999999999999999999999999999999742 1               5899999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 016620          318 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV  356 (386)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~  356 (386)
                      |||+||+|.++++++.+.+++||.+|++|++....+|.+
T Consensus       292 TPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n~v  330 (334)
T 3kb6_A          292 TPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGNFV  330 (334)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGGEE
T ss_pred             CCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCCcC
Confidence            999999999999999999999999999999887777754

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=7.1e-67  Score=511.15  Aligned_cols=319  Identities=29%  Similarity=0.432  Sum_probs=284.8

Q ss_pred             CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      +++|||++.+++++ ..+.|++.+ ++.+. ..+..++.+++.+.+. ++|++++....++++++++++++|  |+|++.
T Consensus         1 m~~kvlv~~~~~~~-~~~~l~~~~-~v~~~-~~~~~~~~~~~~~~~~-~~d~~i~~~~~~i~~~~l~~~~~L--k~I~~~   74 (330)
T 4e5n_A            1 MLPKLVITHRVHEE-ILQLLAPHC-ELITN-QTDSTLTREEILRRCR-DAQAMMAFMPDRVDADFLQACPEL--RVIGCA   74 (330)
T ss_dssp             CCCEEEECSCCCHH-HHHHHTTTC-EEECC-CSSSCCCHHHHHHHHT-TCSEEEECTTCCBCHHHHHHCTTC--CEEEES
T ss_pred             CCCEEEEecCCCHH-HHHHHHhCC-eEEEe-cCCCCCCHHHHHHHhC-CCeEEEEeCCCCCCHHHHhhCCCC--cEEEEC
Confidence            46789999988875 468887765 55432 2334568899988887 599999977789999999999988  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~  173 (386)
                      |+|+|+||+++|+++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|..|.+ ...|++++|+||||||+
T Consensus        75 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~tvGIIG~  153 (330)
T 4e5n_A           75 LKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGM  153 (330)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCS-CCCCCCSTTCEEEEECC
T ss_pred             CCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCc-cccCCccCCCEEEEEee
Confidence            99999999999999999999999999999999999999999999999999999999988876 34678999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhc
Q 016620          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (386)
Q Consensus       174 G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~l  253 (386)
                      |.||+++|+++ ++|||+|++||++.......         ...+     . ...++++++++||+|++|+|+|++|+++
T Consensus       154 G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---------~~~g-----~-~~~~l~ell~~aDvV~l~~P~t~~t~~l  217 (330)
T 4e5n_A          154 GAIGLAMADRL-QGWGATLQYHEAKALDTQTE---------QRLG-----L-RQVACSELFASSDFILLALPLNADTLHL  217 (330)
T ss_dssp             SHHHHHHHHHT-TTSCCEEEEECSSCCCHHHH---------HHHT-----E-EECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCCcHhHH---------HhcC-----c-eeCCHHHHHhhCCEEEEcCCCCHHHHHH
Confidence            99999999997 79999999999986321110         0011     1 2358999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC-------CCC-CCCCCCCCCeEEcCCCCCCc
Q 016620          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-------PYM-KPGLSEMKNAIVVPHIASAS  325 (386)
Q Consensus       254 i~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~E-------P~~-~~~L~~~~nvilTPHia~~t  325 (386)
                      |+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++|       |++ ++|||++|||++|||+||+|
T Consensus       218 i~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t  297 (330)
T 4e5n_A          218 VNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAV  297 (330)
T ss_dssp             BCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCC
T ss_pred             hCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCCh
Confidence            9999999999999999999999999999999999999999999999999       975 46999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          326 KWTREGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       326 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      .++++++.+.+++||.+|++|+++.|.||.
T Consensus       298 ~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~  327 (330)
T 4e5n_A          298 RAVRLEIERCAAQNILQALAGERPINAVNR  327 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCCTTBSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCccCC
Confidence            999999999999999999999999999986

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.6e-67  Score=514.00  Aligned_cols=314  Identities=28%  Similarity=0.402  Sum_probs=249.1

Q ss_pred             CCCCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEE
Q 016620           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (386)
Q Consensus        12 ~~~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~   91 (386)
                      ++++++||++.+++++ ..+.|++. +++.....   ..+.+++.+.+. ++|+++++..+++++++++++|+|  |+|+
T Consensus        27 ~~~~~~vl~~~~~~~~-~~~~L~~~-~~v~~~~~---~~~~~~~~~~~~-~~d~li~~~~~~i~~~~l~~~p~L--k~I~   98 (340)
T 4dgs_A           27 RNVKPDLLLVEPMMPF-VMDELQRN-YSVHRLYQ---AADRPALEAALP-SIRAVATGGGAGLSNEWMEKLPSL--GIIA   98 (340)
T ss_dssp             ------CEECSCCCHH-HHHTHHHH-SCCEETTC---GGGHHHHHHHGG-GCCEEEEETTTCBCHHHHHHCSSC--CEEE
T ss_pred             CCCCCEEEEECCCCHH-HHHHHhcC-CcEEEeCC---CCCHHHHHHHhC-CcEEEEEcCCCCCCHHHHhhCCCC--EEEE
Confidence            3567889999999875 46777553 44443221   135777777774 699999987778999999999988  9999


Q ss_pred             EccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 016620           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (386)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIv  171 (386)
                      +.|+|+|+||+++|+++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|..+. ....|++++|+|||||
T Consensus        99 ~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~-~~~~~~~l~gktiGII  177 (340)
T 4dgs_A           99 INGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGE-QLPLGHSPKGKRIGVL  177 (340)
T ss_dssp             EESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC-------CCCCCCTTCEEEEE
T ss_pred             ECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCccccc-CcCccccccCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999986431 1235789999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhh
Q 016620          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (386)
Q Consensus       172 G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~  251 (386)
                      |+|.||+++|+++ ++|||+|++|||+....                   .......+++|++++||+|++|+|++++|+
T Consensus       178 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-------------------~~~~~~~sl~ell~~aDvVil~vP~t~~t~  237 (340)
T 4dgs_A          178 GLGQIGRALASRA-EAFGMSVRYWNRSTLSG-------------------VDWIAHQSPVDLARDSDVLAVCVAASAATQ  237 (340)
T ss_dssp             CCSHHHHHHHHHH-HTTTCEEEEECSSCCTT-------------------SCCEECSSHHHHHHTCSEEEECC-------
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEcCCcccc-------------------cCceecCCHHHHHhcCCEEEEeCCCCHHHH
Confidence            9999999999997 79999999999976431                   112235689999999999999999999999


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (386)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  331 (386)
                      ++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++.+|||++|||++|||+||+|.+++++
T Consensus       238 ~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPHia~~t~e~~~~  317 (340)
T 4dgs_A          238 NIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPHQGSATVETRMA  317 (340)
T ss_dssp             ---CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSSCSSCCHHHHHH
T ss_pred             HHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCcCCcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCC
Q 016620          332 MATLAALNVLGKIKGYPIWGNPN  354 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g~~~~~~v~  354 (386)
                      +...+++||.+|++|+++.|.||
T Consensus       318 ~~~~~~~nl~~~~~g~~~~~~Vn  340 (340)
T 4dgs_A          318 MGKLVLANLAAHFAGEKAPNTVN  340 (340)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTBC-
T ss_pred             HHHHHHHHHHHHHcCCCCCCCcC
Confidence            99999999999999999999997

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=5e-66  Score=516.05  Aligned_cols=316  Identities=28%  Similarity=0.365  Sum_probs=279.5

Q ss_pred             CCCCCcEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcE
Q 016620           11 NPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA   89 (386)
Q Consensus        11 ~~~~~~~vlvt~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~   89 (386)
                      .|+++|||+++.++.+.. .+.|++.++ ++++..   ..++.+++.+.+. ++|++++...+++++++++++|+|  |+
T Consensus        11 ~~~~~~kIl~~~~i~~~~-~~~l~~~g~~~v~~~~---~~~~~~~l~~~~~-~~d~l~v~~~~~i~~~~l~~~p~L--k~   83 (416)
T 3k5p_A           11 LSRDRINVLLLEGISQTA-VEYFKSSGYTNVTHLP---KALDKADLIKAIS-SAHIIGIRSRTQLTEEIFAAANRL--IA   83 (416)
T ss_dssp             -CGGGSCEEECSCCCHHH-HHHHHHTTCCCEEECS---SCCCHHHHHHHHT-TCSEEEECSSCCBCHHHHHHCTTC--CE
T ss_pred             CCCCCcEEEEECCCCHHH-HHHHHHCCCcEEEECC---CCCCHHHHHHHcc-CCEEEEEcCCCCCCHHHHHhCCCc--EE
Confidence            467789999999888754 688888877 776532   2468899988887 599998888889999999999988  99


Q ss_pred             EEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016620           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (386)
Q Consensus        90 i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vg  169 (386)
                      |++.|+|+|+||+++|+++||.|+|+|++++++|||++++++|++.|++..+++.+++|.|..+   .+.+.+++|+|||
T Consensus        84 I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~---~~~~~el~gktvG  160 (416)
T 3k5p_A           84 VGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKT---AIGSREVRGKTLG  160 (416)
T ss_dssp             EEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CTTCCCSTTCEEE
T ss_pred             EEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhccccccc---CCCCccCCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999987543   2356899999999


Q ss_pred             EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh
Q 016620          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (386)
Q Consensus       170 IvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~  249 (386)
                      |||+|.||+++|+++ ++|||+|++||++....                  ........+++|++++||+|++|+|++++
T Consensus       161 IIGlG~IG~~vA~~l-~~~G~~V~~yd~~~~~~------------------~~~~~~~~sl~ell~~aDvV~lhvPlt~~  221 (416)
T 3k5p_A          161 IVGYGNIGSQVGNLA-ESLGMTVRYYDTSDKLQ------------------YGNVKPAASLDELLKTSDVVSLHVPSSKS  221 (416)
T ss_dssp             EECCSHHHHHHHHHH-HHTTCEEEEECTTCCCC------------------BTTBEECSSHHHHHHHCSEEEECCCC---
T ss_pred             EEeeCHHHHHHHHHH-HHCCCEEEEECCcchhc------------------ccCcEecCCHHHHHhhCCEEEEeCCCCHH
Confidence            999999999999997 79999999999864321                  00122457999999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-----CCCCCCCCeEEcCCCCCC
Q 016620          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIASA  324 (386)
Q Consensus       250 t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-----~~L~~~~nvilTPHia~~  324 (386)
                      |+++|+++.|++||+|++|||+|||+++|++||+++|++|++.||++|||++||++.     +|||++|||++|||+||+
T Consensus       222 T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~  301 (416)
T 3k5p_A          222 TSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGS  301 (416)
T ss_dssp             --CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTC
T ss_pred             HhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999864     589999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          325 SKWTREGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       325 t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      |.++++++...+++|+.+|++|++..+.||.
T Consensus       302 T~ea~~~~~~~~~~nl~~~l~~g~~~~~Vn~  332 (416)
T 3k5p_A          302 TEEAQERIGTEVTRKLVEYSDVGSTVGAVNF  332 (416)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHCCCTTBSSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhCCCCceeeC
Confidence            9999999999999999999999999999986

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=6e-66  Score=505.89  Aligned_cols=316  Identities=27%  Similarity=0.399  Sum_probs=269.4

Q ss_pred             CcEEEEeCCCCc-hHHHHH-HHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHH-HHHHhhccCCcEEE
Q 016620           15 KYRVVSTKPMPG-TRWINL-LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET-LFAALSRAGGKAFS   91 (386)
Q Consensus        15 ~~~vlvt~~~~~-~~~~~~-l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~-~l~~l~~l~~k~i~   91 (386)
                      +|||++....+. ..+++. +++.++++.....   .++ +++.+.+. ++|++++...++++++ +++++++.++|+|+
T Consensus         1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~-~~~~~~~~-~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~   75 (343)
T 2yq5_A            1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQ---ALT-SATVDLAE-GCSSVSLKPLGPVDEEVVYQKLSEYGVKCIG   75 (343)
T ss_dssp             -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESS---CCS-TTGGGGGT-TCSEEEECCSSCBCCHHHHHHHHHTTCCEEE
T ss_pred             CceEEEEecCcccHHHHHHHHHhCCeEEEECCC---CCC-HHHHHHhc-CCcEEEEcCCCCcCHHHHHHhccccCceEEE
Confidence            478888653332 233433 4556777765433   223 45555565 5999999877899999 99999875669999


Q ss_pred             EccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHH-cCccCCCCCCcccccccCCCeEEE
Q 016620           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR-AGLYDGWLPNLFVGNLLKGQTVGV  170 (386)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~-~~~~~~w~~~~~~g~~l~g~~vgI  170 (386)
                      +.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.++ +|.|. |.. ...+++++|+||||
T Consensus        76 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~-w~~-~~~~~~l~gktvgI  153 (343)
T 2yq5_A           76 LRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFT-WPS-NLISNEIYNLTVGL  153 (343)
T ss_dssp             ESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCC-CCG-GGCBCCGGGSEEEE
T ss_pred             ECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcc-ccc-CCCccccCCCeEEE
Confidence            9999999999999999999999999999999999999999999999999999999 99885 743 25678999999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhh
Q 016620          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (386)
Q Consensus       171 vG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t  250 (386)
                      ||+|.||+++|+++ ++|||+|++||++.....+            .      .....++++++++||+|++|+|+|++|
T Consensus       154 iGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~------------~------~~~~~~l~ell~~aDvV~l~~Plt~~t  214 (343)
T 2yq5_A          154 IGVGHIGSAVAEIF-SAMGAKVIAYDVAYNPEFE------------P------FLTYTDFDTVLKEADIVSLHTPLFPST  214 (343)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCGGGT------------T------TCEECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EecCHHHHHHHHHH-hhCCCEEEEECCChhhhhh------------c------cccccCHHHHHhcCCEEEEcCCCCHHH
Confidence            99999999999997 7999999999998754110            0      112359999999999999999999999


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC--CCCC------------CCCCCCCeE
Q 016620          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP--YMKP------------GLSEMKNAI  316 (386)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP--~~~~------------~L~~~~nvi  316 (386)
                      +++|+++.|++||+|++|||+|||+++|++||+++|++|++.||+||||++||  ++.+            |||++|||+
T Consensus       215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvi  294 (343)
T 2yq5_A          215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVV  294 (343)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEE
T ss_pred             HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999  4433            799999999


Q ss_pred             EcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 016620          317 VVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQV  356 (386)
Q Consensus       317 lTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~  356 (386)
                      +|||+|++|.++++++.+.+++||.+|++|+++.|.||..
T Consensus       295 lTPHia~~t~ea~~~~~~~~~~ni~~~l~g~~~~~~v~~~  334 (343)
T 2yq5_A          295 ITPHSAFYTETSIRNMVQICLTDQLTIAKGGRPRSIVNLT  334 (343)
T ss_dssp             ECSSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCTTBC---
T ss_pred             ECCccccchHHHHHHHHHHHHHHHHHHHcCCCCCceECCc
Confidence            9999999999999999999999999999999999999875

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=3.3e-65  Score=511.28  Aligned_cols=319  Identities=24%  Similarity=0.328  Sum_probs=275.2

Q ss_pred             CCCCcEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEE
Q 016620           12 PNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (386)
Q Consensus        12 ~~~~~~vlvt~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i   90 (386)
                      |.++|||+++.++.+. ..+.|++.++ ++++..   ..++.+++.+.+. ++|++++...+++++++++++++|  |+|
T Consensus         1 ~~~~~kil~~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~l~~~~~-~~d~l~~~~~~~~~~~~l~~~~~L--k~I   73 (404)
T 1sc6_A            1 EKDKIKFLLVEGVHQK-ALESLRAAGYTNIEFHK---GALDDEQLKESIR-DAHFIGLRSRTHLTEDVINAAEKL--VAI   73 (404)
T ss_dssp             CCSSCCEEECSCCCHH-HHHHHHHTTCCCEEECS---SCCCHHHHHHHTT-SCSEEEECSSCCBCHHHHHHCSSC--CEE
T ss_pred             CCCceEEEEeCCCCHH-HHHHHHhCCCcEEEEcC---CCCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--cEE
Confidence            3567899998888764 4678877776 676532   2458899988887 599998887788999999999988  999


Q ss_pred             EEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEE
Q 016620           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (386)
Q Consensus        91 ~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgI  170 (386)
                      ++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|..+   .+.|.+++|+|+||
T Consensus        74 ~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~---~~~~~el~gktlGi  150 (404)
T 1sc6_A           74 GAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL---AAGSFEARGKKLGI  150 (404)
T ss_dssp             EECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEE
T ss_pred             EECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCcccc---CCCccccCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999999987532   24568999999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhh
Q 016620          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (386)
Q Consensus       171 vG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t  250 (386)
                      ||+|.||+.+|+++ ++|||+|++|||+....              .+    ......+++|++++||+|++|+|++++|
T Consensus       151 IGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~--------------~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t  211 (404)
T 1sc6_A          151 IGYGHIGTQLGILA-ESLGMYVYFYDIENKLP--------------LG----NATQVQHLSDLLNMSDVVSLHVPENPST  211 (404)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCCC--------------CT----TCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred             EeECHHHHHHHHHH-HHCCCEEEEEcCCchhc--------------cC----CceecCCHHHHHhcCCEEEEccCCChHH
Confidence            99999999999997 79999999999865320              00    1223468999999999999999999999


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-----CCCCCCCCCeEEcCCCCCCc
Q 016620          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-----KPGLSEMKNAIVVPHIASAS  325 (386)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-----~~~L~~~~nvilTPHia~~t  325 (386)
                      +++|+++.|++||+|++|||+|||+++|+++|+++|++|++.||+||||++||++     .+|||++|||++|||+|++|
T Consensus       212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T  291 (404)
T 1sc6_A          212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST  291 (404)
T ss_dssp             TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCS
T ss_pred             HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCc
Confidence            9999999999999999999999999999999999999999999999999999986     35899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCC
Q 016620          326 KWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLN  361 (386)
Q Consensus       326 ~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~~~  361 (386)
                      .++++++...+++|+.+|++|+++.|.||.  |.+.
T Consensus       292 ~ea~~~~~~~~~~nl~~~l~g~~~~~~vn~--p~~~  325 (404)
T 1sc6_A          292 QEAQENIGLEVAGKLIKYSDNGSTLSAVNF--PEVS  325 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCTTBSSS--CCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCcceecc--cccc
Confidence            999999999999999999999999999985  5443

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=1.5e-65  Score=499.47  Aligned_cols=309  Identities=23%  Similarity=0.258  Sum_probs=270.8

Q ss_pred             CCCcEEEEeCCCCchHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEE
Q 016620           13 NGKYRVVSTKPMPGTRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (386)
Q Consensus        13 ~~~~~vlvt~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~   91 (386)
                      .+||||+++.+..+ .|.+.| ++..+++++....    +.+++.+.+. ++|+++++.  .+++++++++|+|  |+|+
T Consensus         3 ~~~mkili~~~~~~-~~~~~L~~~~~p~~~~~~~~----~~~~~~~~~~-~ad~li~~~--~~~~~~l~~~~~L--k~I~   72 (324)
T 3hg7_A            3 LSQRTLLLLSQDNA-HYERLLKAAHLPHLRILRAD----NQSDAEKLIG-EAHILMAEP--ARAKPLLAKANKL--SWFQ   72 (324)
T ss_dssp             -CCEEEEEESTTHH-HHHHHHHHSCCTTEEEEECS----SHHHHHHHGG-GCSEEEECH--HHHGGGGGGCTTC--CEEE
T ss_pred             ccccEEEEecCCCH-HHHHHHhhccCCCeEEEeCC----ChhHHHHHhC-CCEEEEECC--CCCHHHHhhCCCc--eEEE
Confidence            45699999988875 588989 7777788775442    4677777776 599998853  4556788889988  9999


Q ss_pred             EccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 016620           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (386)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIv  171 (386)
                      +.|+|+|+||++++++ ||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|..+     .+.+++|+|||||
T Consensus        73 ~~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~tvGII  146 (324)
T 3hg7_A           73 STYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH-----PYQGLKGRTLLIL  146 (324)
T ss_dssp             ESSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTCEEEEE
T ss_pred             ECCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC-----CCcccccceEEEE
Confidence            9999999999988765 999999999999999999999999999999999999999987542     3579999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhh
Q 016620          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (386)
Q Consensus       172 G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~  251 (386)
                      |+|.||+++|+++ ++|||+|++||++.....              ..  .......+++|++++||+|++|+|+|++|+
T Consensus       147 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~T~  209 (324)
T 3hg7_A          147 GTGSIGQHIAHTG-KHFGMKVLGVSRSGRERA--------------GF--DQVYQLPALNKMLAQADVIVSVLPATRETH  209 (324)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSCCCCT--------------TC--SEEECGGGHHHHHHTCSEEEECCCCCSSST
T ss_pred             EECHHHHHHHHHH-HhCCCEEEEEcCChHHhh--------------hh--hcccccCCHHHHHhhCCEEEEeCCCCHHHH
Confidence            9999999999997 799999999999764310              00  111234689999999999999999999999


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHHHH
Q 016620          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTRE  330 (386)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~  330 (386)
                      ++|+++.|+.||+|++|||+|||+++|++||+++|++|++.||+||||++||++. +|||++|||++|||+||+|.+  +
T Consensus       210 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~  287 (324)
T 3hg7_A          210 HLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--D  287 (324)
T ss_dssp             TSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--H
T ss_pred             HHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--H
Confidence            9999999999999999999999999999999999999999999999999999875 699999999999999999975  5


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCCCC
Q 016620          331 GMATLAALNVLGKIKGYPIWGNPNQV  356 (386)
Q Consensus       331 ~~~~~~~~ni~~~~~g~~~~~~v~~~  356 (386)
                      ++.+.+++||.+|++|+++.|.||.-
T Consensus       288 ~~~~~~~~nl~~~~~G~~~~~~V~~~  313 (324)
T 3hg7_A          288 DVAQIFVRNYIRFIDGQPLDGKIDFD  313 (324)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTBCCCC
T ss_pred             HHHHHHHHHHHHHHcCCCCcceEChh
Confidence            79999999999999999999999863

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=1.4e-65  Score=500.10  Aligned_cols=315  Identities=19%  Similarity=0.221  Sum_probs=267.5

Q ss_pred             CcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHH-HHhhccCCcEEEEc
Q 016620           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLF-AALSRAGGKAFSNM   93 (386)
Q Consensus        15 ~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l-~~l~~l~~k~i~~~   93 (386)
                      |||||++.++++ ++.+.|++.++++++....+  .+.+++    . ++|+++++.. ++ ++++ +++|+|  |+|++.
T Consensus         1 m~kil~~~~~~~-~~~~~L~~~~~~~~~~~~~~--~~~~~~----~-~ad~l~~~~~-~~-~~~l~~~~~~L--k~I~~~   68 (324)
T 3evt_A            1 MSLVLMAQATKP-EQLQQLQTTYPDWTFKDAAA--VTAADY----D-QIEVMYGNHP-LL-KTILARPTNQL--KFVQVI   68 (324)
T ss_dssp             -CEEEECSCCCH-HHHHHHHHHCTTCEEEETTS--CCTTTG----G-GEEEEESCCT-HH-HHHHHSTTCCC--CEEECS
T ss_pred             CcEEEEecCCCH-HHHHHHHhhCCCeEEecCCc--cChHHh----C-CcEEEEECCc-Ch-HHHHHhhCCCc--eEEEEC
Confidence            478999999887 46888988877666543322  233443    2 5898887754 46 7888 678988  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHH-HHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA-DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~-~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG  172 (386)
                      |+|+|+||+++++++||.|+|+||+++.+||||+++++|++.|++..+ .+.+++|.|....    .+++++|+||||||
T Consensus        69 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~----~~~~l~gktvGIiG  144 (324)
T 3evt_A           69 SAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM----TTSTLTGQQLLIYG  144 (324)
T ss_dssp             SSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS----CCCCSTTCEEEEEC
T ss_pred             CccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC----CCccccCCeEEEEC
Confidence            999999999999999999999999999999999999999999999999 8889999875421    46899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (386)
Q Consensus       173 ~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~  252 (386)
                      +|.||+++|+++ ++|||+|++||++.....              . .. ......++++++++||+|++|+|+|++|++
T Consensus       145 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~-~~-~~~~~~~l~ell~~aDvV~l~lPlt~~t~~  207 (324)
T 3evt_A          145 TGQIGQSLAAKA-SALGMHVIGVNTTGHPAD--------------H-FH-ETVAFTATADALATANFIVNALPLTPTTHH  207 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEEESSCCCCT--------------T-CS-EEEEGGGCHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HhCCCEEEEECCCcchhH--------------h-Hh-hccccCCHHHHHhhCCEEEEcCCCchHHHH
Confidence            999999999997 799999999998764310              0 00 112346899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREG  331 (386)
Q Consensus       253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~  331 (386)
                      +|+++.|+.||+|++|||+|||+++|++||+++|++|++.||+||||++||++. +|||++|||++|||+||+|.+++++
T Consensus       208 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~  287 (324)
T 3evt_A          208 LFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRAT  287 (324)
T ss_dssp             CBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHH
T ss_pred             hcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHH
Confidence            999999999999999999999999999999999999999999999999999875 7999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcC-CCCCCCCCCCCcCCCC
Q 016620          332 MATLAALNVLGKIKG-YPIWGNPNQVEPFLNE  362 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g-~~~~~~v~~~~~~~~~  362 (386)
                      +.+.+++||.+|++| +++.|.||.-..+.++
T Consensus       288 ~~~~~~~nl~~~l~~~~~~~n~V~~~~~~~~~  319 (324)
T 3evt_A          288 VFPIFAANFAQFVKDGTLVRNQVDLNRGYEGH  319 (324)
T ss_dssp             HHHHHHHHHHHHHHHSCCCSCBCC--------
T ss_pred             HHHHHHHHHHHHHhCCCCCCceECcccccCCC
Confidence            999999999999965 5789999976555554

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=4.6e-64  Score=494.65  Aligned_cols=315  Identities=27%  Similarity=0.402  Sum_probs=273.3

Q ss_pred             CcEEEEeCCCCch-----HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEe-cCCccccHHHHHHhhccCCc
Q 016620           15 KYRVVSTKPMPGT-----RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-QLTEDWGETLFAALSRAGGK   88 (386)
Q Consensus        15 ~~~vlvt~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~-~~~~~~~~~~l~~l~~l~~k   88 (386)
                      +|||++...+...     .| +.+  .+++++++..  ...+.+++.+.+. ++|++++ +...++++++++++|+|  |
T Consensus         2 smki~~~d~~~~~~~~~~~~-~~l--~~~~v~~~~~--~~~~~~~l~~~~~-~ad~li~~~~~~~~~~~~l~~~~~L--k   73 (352)
T 3gg9_A            2 SLKIAVLDDYQDAVRKLDCF-SLL--QDHEVKVFNN--TVKGVGQLAARVA-DVEALVLIRERTRVTRQLLDRLPKL--K   73 (352)
T ss_dssp             CCEEEECCCTTCCGGGSGGG-GGG--TTSEEEECCS--CCCSHHHHHHHTT-TCSEEEECTTSSCBCHHHHTTCTTC--C
T ss_pred             ceEEEEEcCccccchhhhhh-hhh--cCceEEEecC--CCCCHHHHHHHhc-CCeEEEEeCCCCCCCHHHHhhCCCC--e
Confidence            4889887665432     22 334  2467766433  2247788888887 5999998 56678999999999988  9


Q ss_pred             EEEEccccc----cccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCC-------CCCCc
Q 016620           89 AFSNMAVGY----NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-------WLPNL  157 (386)
Q Consensus        89 ~i~~~~~G~----d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~-------w~~~~  157 (386)
                      +|++.|+|+    |+||+++|+++||.|+|+||+ +.+||||+++++|++.|++..+++.+++|.|..       |.+..
T Consensus        74 ~I~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~  152 (352)
T 3gg9_A           74 IISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNF  152 (352)
T ss_dssp             EEEESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTT
T ss_pred             EEEEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCccccccccccccc
Confidence            999999999    999999999999999999999 999999999999999999999999999999863       33333


Q ss_pred             ccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       158 ~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      ..|++++|+||||||+|.||+++|+++ ++|||+|++||++......          ...+     .....+++|++++|
T Consensus       153 ~~~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~----------~~~g-----~~~~~~l~ell~~a  216 (352)
T 3gg9_A          153 GIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVLVWGRENSKERA----------RADG-----FAVAESKDALFEQS  216 (352)
T ss_dssp             TSBCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSHHHHHHH----------HHTT-----CEECSSHHHHHHHC
T ss_pred             ccCccCCCCEEEEEeECHHHHHHHHHH-HhCCCEEEEECCCCCHHHH----------HhcC-----ceEeCCHHHHHhhC
Confidence            467899999999999999999999997 7999999999998643211          1111     22345999999999


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCCCCCCCCeE
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAI  316 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi  316 (386)
                      |+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++ ++|||++|||+
T Consensus       217 DiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvi  296 (352)
T 3gg9_A          217 DVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCI  296 (352)
T ss_dssp             SEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEE
T ss_pred             CEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999986 47999999999


Q ss_pred             EcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          317 VVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       317 lTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      +|||+||+|.++++++...+++||.+|++|+|+ |.||.
T Consensus       297 lTPHia~~t~e~~~~~~~~~~~ni~~~~~G~p~-~~Vn~  334 (352)
T 3gg9_A          297 CTPHIGYVERESYEMYFGIAFQNILDILQGNVD-SVANP  334 (352)
T ss_dssp             ECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCT-TBSCG
T ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCC-cccCH
Confidence            999999999999999999999999999999885 77874

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=1.2e-63  Score=491.25  Aligned_cols=299  Identities=22%  Similarity=0.262  Sum_probs=263.6

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCcEEEEccccccccChhHHh
Q 016620           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (386)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~--~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~  106 (386)
                      ..+.|++.++++.+.....  .+.+++.+.+. ++|++++..  ..++++++++++|+|  |+|++.|+|+|+||+++|+
T Consensus        32 ~~~~L~~~g~ev~~~~~~~--~~~~~~~~~~~-~ad~li~~~~~~~~~~~~~l~~~p~L--k~i~~~g~G~d~id~~~a~  106 (351)
T 3jtm_A           32 IRDWLESQGHQYIVTDDKE--GPDCELEKHIP-DLHVLISTPFHPAYVTAERIKKAKNL--KLLLTAGIGSDHIDLQAAA  106 (351)
T ss_dssp             CHHHHHHTTCEEEEESCCS--STTSHHHHHTT-TCSEEEECTTSCCCBCHHHHHHCSSC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHHCCCEEEEeCCCC--CCHHHHHHHhC-CCEEEEEccCCCCCCCHHHHhhCCCC--eEEEEeCeeecccCHHHHH
Confidence            4677888899987655433  25568888887 599999864  356899999999988  9999999999999999999


Q ss_pred             hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (386)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~  186 (386)
                      ++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.. ......+.+++|+||||||+|.||+++|++| +
T Consensus       107 ~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l-~  184 (351)
T 3jtm_A          107 AAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV-AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRL-K  184 (351)
T ss_dssp             HTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCH-HHHHTTCCCSTTCEEEEECCSHHHHHHHHHH-G
T ss_pred             hcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCcc-ccccCCcccccCCEEeEEEeCHHHHHHHHHH-H
Confidence            9999999999999999999999999999999999999999998752 1111235789999999999999999999997 7


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCc
Q 016620          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (386)
Q Consensus       187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~ga  266 (386)
                      +|||+|++||++.......         ...+     .....++++++++||+|++|+|+|++|+++|+++.|+.||+|+
T Consensus       185 ~~G~~V~~~dr~~~~~~~~---------~~~g-----~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~ga  250 (351)
T 3jtm_A          185 PFGCNLLYHDRLQMAPELE---------KETG-----AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGV  250 (351)
T ss_dssp             GGCCEEEEECSSCCCHHHH---------HHHC-----CEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTE
T ss_pred             HCCCEEEEeCCCccCHHHH---------HhCC-----CeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCC
Confidence            9999999999875321110         1111     2234689999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 016620          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWTREGMATLAALNVLGKIK  345 (386)
Q Consensus       267 ilIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~ni~~~~~  345 (386)
                      +|||+|||+++|++||+++|++|+|.||+||||++||++. +|||++|||++|||+||.|.+++.++.+.+++|+.+|++
T Consensus       251 ilIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~  330 (351)
T 3jtm_A          251 LIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFK  330 (351)
T ss_dssp             EEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999875 699999999999999999999999999999999999999


Q ss_pred             CCC
Q 016620          346 GYP  348 (386)
Q Consensus       346 g~~  348 (386)
                      |++
T Consensus       331 g~~  333 (351)
T 3jtm_A          331 GED  333 (351)
T ss_dssp             TCC
T ss_pred             CCC
Confidence            996

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=1.1e-62  Score=482.52  Aligned_cols=314  Identities=28%  Similarity=0.402  Sum_probs=268.7

Q ss_pred             cEEEEeCCCC-chHHHHHHHhC--CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEE
Q 016620           16 YRVVSTKPMP-GTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (386)
Q Consensus        16 ~~vlvt~~~~-~~~~~~~l~~~--~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~   92 (386)
                      |||++....+ ...+.+.+++.  +.++.+....    ..+++.+.+. ++|+++++...++++++++++++.++|+|++
T Consensus         2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   76 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKL----LTPETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSL   76 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSC----CCTTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCC----CcHHHHHHhc-CCcEEEEcCCCCCCHHHHHhccccCCeEEEE
Confidence            5777754322 23466777654  4455443221    1235555554 5999998877789999999999834499999


Q ss_pred             ccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016620           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (386)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG  172 (386)
                      .|+|+|+||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|. |..  ..+++++|++|||||
T Consensus        77 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~--~~~~~l~g~~vgIiG  153 (333)
T 1j4a_A           77 RNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVG  153 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEEC
T ss_pred             CCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCc-cCC--cccccCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999985 643  356899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (386)
Q Consensus       173 ~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~  252 (386)
                      +|.||+.+|+++ ++|||+|++||++.......            .     .....++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvV~l~~p~~~~t~~  215 (333)
T 1j4a_A          154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK------------K-----GYYVDSLDDLYKQADVISLHVPDVPANVH  215 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH------------T-----TCBCSCHHHHHHHCSEEEECSCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhHHh------------h-----CeecCCHHHHHhhCCEEEEcCCCcHHHHH
Confidence            999999999997 79999999999987543110            0     11123899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CC--------C----CCCCCCCeEEc
Q 016620          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK--------P----GLSEMKNAIVV  318 (386)
Q Consensus       253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~--------~----~L~~~~nvilT  318 (386)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||.  +.        +    |||++|||++|
T Consensus       216 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilT  295 (333)
T 1j4a_A          216 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVT  295 (333)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEEC
T ss_pred             HHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999993  32        1    59999999999


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          319 PHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       319 PHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      ||+||+|.++++++.+.+++||.+|++|+++.|.||.
T Consensus       296 PHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~~  332 (333)
T 1j4a_A          296 PKTAFYTTHAVRNMVVKAFDNNLELVEGKEAETPVKV  332 (333)
T ss_dssp             SSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBCCC
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Confidence            9999999999999999999999999999999999874

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=5.1e-63  Score=480.59  Aligned_cols=307  Identities=20%  Similarity=0.233  Sum_probs=261.7

Q ss_pred             CCCcEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEE
Q 016620           13 NGKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (386)
Q Consensus        13 ~~~~~vlvt~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~   91 (386)
                      ++.|||++..+.+ ++.|.+.+++..+++++....+.     +    . .++|+++++.   .+++++++ |+|  |+|+
T Consensus         1 ~~~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~-----~----~-~~ad~~i~~~---~~~~~l~~-~~L--k~I~   64 (315)
T 3pp8_A            1 SNAMEIIFYHPTFNAAWWVNALEKALPHARVREWKVG-----D----N-NPADYALVWQ---PPVEMLAG-RRL--KAVF   64 (315)
T ss_dssp             CCCEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCTT-----C----C-SCCSEEEESS---CCHHHHTT-CCC--SEEE
T ss_pred             CCceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCCC-----C----c-cCcEEEEECC---CCHHHhCC-CCc--eEEE
Confidence            4568999877654 45688888887777776544321     1    1 2699999874   36889988 887  9999


Q ss_pred             Ecccccccc-C-hhH---HhhCCcEEecCCCCC-chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCC
Q 016620           92 NMAVGYNNV-D-VNA---ANKYGIAVGNTPGVL-TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (386)
Q Consensus        92 ~~~~G~d~i-d-~~~---~~~~gI~v~n~~~~~-~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g  165 (386)
                      +.|+|+|+| | +++   +.++||.|+|+++++ +.+||||+++++|++.|++..+++.+++|.|..+     .+++++|
T Consensus        65 ~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g  139 (315)
T 3pp8_A           65 VLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL-----PEYTREE  139 (315)
T ss_dssp             ESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTT
T ss_pred             ECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC-----CCCCcCC
Confidence            999999999 7 876   688999999999874 7999999999999999999999999999987643     3578999


Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      +||||||+|.||+++|+++ ++|||+|++||++.....              +.  .......+++|++++||+|++|+|
T Consensus       140 ~tvGIiG~G~IG~~vA~~l-~~~G~~V~~~dr~~~~~~--------------~~--~~~~~~~~l~ell~~aDiV~l~~P  202 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESL-QAWGFPLRCWSRSRKSWP--------------GV--ESYVGREELRAFLNQTRVLINLLP  202 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HTTTCCEEEEESSCCCCT--------------TC--EEEESHHHHHHHHHTCSEEEECCC
T ss_pred             CEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCchhhh--------------hh--hhhcccCCHHHHHhhCCEEEEecC
Confidence            9999999999999999997 799999999998764310              00  001112589999999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASA  324 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~  324 (386)
                      +|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|++.||+||||++||++. +|||++|||++|||+||+
T Consensus       203 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~  282 (315)
T 3pp8_A          203 NTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAV  282 (315)
T ss_dssp             CCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSC
T ss_pred             CchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999875 799999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcC
Q 016620          325 SKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPF  359 (386)
Q Consensus       325 t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~  359 (386)
                      |.+  +++.+.+++||.+|++|+++.|.||.-++|
T Consensus       283 t~~--~~~~~~~~~ni~~~~~G~~~~~~V~~~~GY  315 (315)
T 3pp8_A          283 TRP--AEAIDYISRTITQLEKGEPVTGQVDRARGY  315 (315)
T ss_dssp             CCH--HHHHHHHHHHHHHHHHTCCCCCBCCCC---
T ss_pred             cHH--HHHHHHHHHHHHHHHcCCCCCceECcccCC
Confidence            985  689999999999999999999999987665

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.3e-62  Score=478.68  Aligned_cols=311  Identities=29%  Similarity=0.442  Sum_probs=268.5

Q ss_pred             CCCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEE
Q 016620           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (386)
Q Consensus        13 ~~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~   92 (386)
                      ++++||+++.++++. ..+.+++.++++....    ..+.+++.+.+. ++|+++++...++++++++++|+|  |+|++
T Consensus        24 ~~~~~vli~~~~~~~-~~~~l~~~~~~v~~~~----~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~I~~   95 (335)
T 2g76_A           24 ANLRKVLISDSLDPC-CRKILQDGGLQVVEKQ----NLSKEELIAELQ-DCEGLIVRSATKVTADVINAAEKL--QVVGR   95 (335)
T ss_dssp             --CCEEEECSCCCHH-HHHHHHHHTCEEEECC----SCCHHHHHHHGG-GCSEEEECSSSCBCHHHHHHCSSC--CEEEE
T ss_pred             ccceEEEEcCCCCHH-HHHHHHhCCCEEEECC----CCCHHHHHHHhc-CceEEEEcCCCCCCHHHHhhCCCC--cEEEE
Confidence            345689998887653 4677777666665422    247888888776 599999887778999999999988  99999


Q ss_pred             ccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016620           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (386)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG  172 (386)
                      .|+|+|+||+++++++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|..   ..+.+.+++|++|||||
T Consensus        96 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~~~~~~~l~g~tvgIIG  172 (335)
T 2g76_A           96 AGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER---KKFMGTELNGKTLGILG  172 (335)
T ss_dssp             SSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCT---GGGCBCCCTTCEEEEEC
T ss_pred             CCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCc---cCCCCcCCCcCEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999998742   22456899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (386)
Q Consensus       173 ~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~  252 (386)
                      +|.||+.+|+++ ++|||+|++||++......          ...+     . ...++++++++||+|++|+|++++|++
T Consensus       173 lG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~----------~~~g-----~-~~~~l~ell~~aDvV~l~~P~t~~t~~  235 (335)
T 2g76_A          173 LGRIGREVATRM-QSFGMKTIGYDPIISPEVS----------ASFG-----V-QQLPLEEIWPLCDFITVHTPLLPSTTG  235 (335)
T ss_dssp             CSHHHHHHHHHH-HTTTCEEEEECSSSCHHHH----------HHTT-----C-EECCHHHHGGGCSEEEECCCCCTTTTT
T ss_pred             ECHHHHHHHHHH-HHCCCEEEEECCCcchhhh----------hhcC-----c-eeCCHHHHHhcCCEEEEecCCCHHHHH
Confidence            999999999997 7999999999998654211          1111     1 135899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHH
Q 016620          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGM  332 (386)
Q Consensus       253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~  332 (386)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||.+++|||++|||++|||++++|.++++++
T Consensus       236 li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~~~~  315 (335)
T 2g76_A          236 LLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQSRC  315 (335)
T ss_dssp             SBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHHHHH
T ss_pred             hhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999976789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCC
Q 016620          333 ATLAALNVLGKIKGYPIWG  351 (386)
Q Consensus       333 ~~~~~~ni~~~~~g~~~~~  351 (386)
                      .+.+++|+.+|++|+++.|
T Consensus       316 ~~~~~~nl~~~~~g~~~~n  334 (335)
T 2g76_A          316 GEEIAVQFVDMVKGKSLTG  334 (335)
T ss_dssp             HHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHcCCCCCC
Confidence            9999999999999999876

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=3.2e-63  Score=489.69  Aligned_cols=312  Identities=22%  Similarity=0.322  Sum_probs=260.0

Q ss_pred             CcEEEEeCCCCc-------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHH-HhcCCCcEEEecCCccccHHHHHHhhccC
Q 016620           15 KYRVVSTKPMPG-------TRWINLLIEQDCRVEICTQKKTILSVEDIIA-LIGDKCDGVIGQLTEDWGETLFAALSRAG   86 (386)
Q Consensus        15 ~~~vlvt~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~-~~~~~ad~vi~~~~~~~~~~~l~~l~~l~   86 (386)
                      .+++++..+.+.       +...+.|++. +++...  .  ..+.+++.+ .+. ++++++..  .++++++++++|+| 
T Consensus        27 ~r~ivll~~~~~~~~~~~~~~~~~~L~~~-~~v~~~--~--~~~~~e~~~~~~~-~~~~i~~~--~~i~~~~l~~~p~L-   97 (365)
T 4hy3_A           27 ERPLAISAPEPRSLDLIFSDEARAALHSK-YEIVEA--D--PENIAGLGDDILG-RARYIIGQ--PPLSAETLARMPAL-   97 (365)
T ss_dssp             -CCEEEEECTTSCHHHHCCHHHHHHHHHH-SEEEEC--C--GGGGGGSCTTHHH-HEEEEEEC--CCCCHHHHTTCTTC-
T ss_pred             CCCEEEEcCCcccccccCCHHHHHHHhCC-cEEEEC--C--CCChHHHHHHhhC-CeEEEEeC--CCCCHHHHhhCCCC-
Confidence            345655544432       2235667665 455421  1  123444432 233 47777753  57999999999998 


Q ss_pred             CcEEEEc-cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCC-cccccccC
Q 016620           87 GKAFSNM-AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN-LFVGNLLK  164 (386)
Q Consensus        87 ~k~i~~~-~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~-~~~g~~l~  164 (386)
                       |+|+.. |+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|. |... ...+.+++
T Consensus        98 -k~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~-w~~~~~~~~~~l~  175 (365)
T 4hy3_A           98 -RSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTEL-WGGEGNASARLIA  175 (365)
T ss_dssp             -CEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCC-CSSSSTTSCCCSS
T ss_pred             -eEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCcc-ccccccccccccC
Confidence             999975 8999999999999999999999999999999999999999999999999999999974 6432 24578999


Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      |+||||||+|.||+.+|+++ ++|||+|++||++......          ...+     . ...+++|++++||+|++|+
T Consensus       176 gktvGIIGlG~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~----------~~~g-----~-~~~~l~ell~~aDvV~l~~  238 (365)
T 4hy3_A          176 GSEIGIVGFGDLGKALRRVL-SGFRARIRVFDPWLPRSML----------EENG-----V-EPASLEDVLTKSDFIFVVA  238 (365)
T ss_dssp             SSEEEEECCSHHHHHHHHHH-TTSCCEEEEECSSSCHHHH----------HHTT-----C-EECCHHHHHHSCSEEEECS
T ss_pred             CCEEEEecCCcccHHHHHhh-hhCCCEEEEECCCCCHHHH----------hhcC-----e-eeCCHHHHHhcCCEEEEcC
Confidence            99999999999999999997 7999999999998643211          1111     1 2468999999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIAS  323 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~  323 (386)
                      |++++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+|. |+||||++||++. +|||++|||++|||+||
T Consensus       239 Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~  317 (365)
T 4hy3_A          239 AVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAG  317 (365)
T ss_dssp             CSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSS
T ss_pred             cCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCcccc
Confidence            999999999999999999999999999999999999999999999998 8999999999864 69999999999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          324 ASKWTREGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       324 ~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      +|.++++++...+++||.+|++|+|+.++||.
T Consensus       318 ~t~e~~~~~~~~~~~ni~~~~~G~~~~~~vn~  349 (365)
T 4hy3_A          318 ALDSAFKKMGDMVLEDMDLMDRGLPPMRCKRA  349 (365)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTTCCCCSSEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence            99999999999999999999999999999974

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=1.2e-62  Score=481.87  Aligned_cols=313  Identities=20%  Similarity=0.287  Sum_probs=269.4

Q ss_pred             cEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEE
Q 016620           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (386)
Q Consensus        16 ~~vlvt~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~   92 (386)
                      |||++..  +.+ ..+++.+.+ .+.++.+...   ..+.+++.+.+. ++|+++++...++++++++++++.|+|+|++
T Consensus         1 mki~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   75 (331)
T 1xdw_A            1 MKVLCYGVRDVE-LPIFEACNKEFGYDIKCVPD---YLNTKETAEMAA-GFDAVILRGNCFANKQNLDIYKKLGVKYILT   75 (331)
T ss_dssp             CEEEECSCCTTT-HHHHHHHGGGTCCEEEECSC---CSCSHHHHHTTT-TCSEEEECTTCCBCHHHHHHHHHHTCCEEEE
T ss_pred             CEEEEEecCccC-HHHHHHHHHhcCeEEEECCC---CCCHHHHHHHhc-CCeEEEEeCCCCCCHHHHhhCcccCceEEEE
Confidence            5777743  333 345676644 4555544221   234467766665 5999999877789999999999844599999


Q ss_pred             ccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016620           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (386)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG  172 (386)
                      .|+|+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|. |.. ...++++.|++|||||
T Consensus        76 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG  153 (331)
T 1xdw_A           76 RTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK-VDA-FMFSKEVRNCTVGVVG  153 (331)
T ss_dssp             SSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC-CCS-TTCCCCGGGSEEEEEC
T ss_pred             ccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCc-ccc-CcCccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999985 622 2356899999999999


Q ss_pred             cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhh
Q 016620          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (386)
Q Consensus       173 ~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~  252 (386)
                      +|.||+.+|+++ ++|||+|++||++.....                ...  ....++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~----------------~~~--~~~~~l~ell~~aDvV~~~~p~t~~t~~  214 (331)
T 1xdw_A          154 LGRIGRVAAQIF-HGMGATVIGEDVFEIKGI----------------EDY--CTQVSLDEVLEKSDIITIHAPYIKENGA  214 (331)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCSC----------------TTT--CEECCHHHHHHHCSEEEECCCCCTTTCC
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCccHHH----------------Hhc--cccCCHHHHHhhCCEEEEecCCchHHHH
Confidence            999999999997 799999999999764310                000  1245899999999999999999999999


Q ss_pred             cccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC--CC--------C----CCCCC-CCeEE
Q 016620          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY--MK--------P----GLSEM-KNAIV  317 (386)
Q Consensus       253 li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~--~~--------~----~L~~~-~nvil  317 (386)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||+  +.        +    |||++ |||++
T Consensus       215 li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvil  294 (331)
T 1xdw_A          215 VVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLI  294 (331)
T ss_dssp             SBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEE
T ss_pred             HhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEE
Confidence            9999999999999999999999999999999999999999999999999994  21        2    69999 99999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016620          318 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (386)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  354 (386)
                      |||+||+|.++++++.+.+++||.+|++|+++.|.||
T Consensus       295 TPHia~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v~  331 (331)
T 1xdw_A          295 TPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKIK  331 (331)
T ss_dssp             CCSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTBCC
T ss_pred             cCccccChHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            9999999999999999999999999999999999886

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-61  Score=470.54  Aligned_cols=309  Identities=38%  Similarity=0.574  Sum_probs=276.3

Q ss_pred             cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      |||+++.+++++ ..+.+++.++++++....  ..+.+++.+.+. ++|+++++..+++++++++++|+|  |+|++.|+
T Consensus         1 ~~vl~~~~~~~~-~~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~i~~~~~   74 (311)
T 2cuk_A            1 MRVLVTRTLPGK-ALDRLRERGLEVEVHRGL--FLPKAELLKRVE-GAVGLIPTVEDRIDAEVMDRAKGL--KVIACYSV   74 (311)
T ss_dssp             CEEEESSCCSSS-TTHHHHHTTCEEEECCSS--CCCHHHHHHHHT-TCSEEECCTTSCBCHHHHHHSTTC--CEEECSSS
T ss_pred             CEEEEeCCCCHH-HHHHHHhcCCeEEEecCC--CCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--eEEEECCc
Confidence            578888777664 357777776777654322  357888888876 599999887678999999999988  99999999


Q ss_pred             cccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016620           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (386)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~  175 (386)
                      |+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|.+....+.++.|++|||||+|.
T Consensus        75 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           75 GVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             CCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSH
T ss_pred             CccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECH
Confidence            99999999999999999999999999999999999999999999999999999997664433457899999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhccc
Q 016620          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (386)
Q Consensus       176 IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~  255 (386)
                      ||+.+|+++ ++||++|++||++....                 .    ....++++++++||+|++|+|++++|+++|+
T Consensus       155 IG~~~A~~l-~~~G~~V~~~d~~~~~~-----------------~----~~~~~l~ell~~aDvV~l~~p~~~~t~~li~  212 (311)
T 2cuk_A          155 IGQAVAKRA-LAFGMRVVYHARTPKPL-----------------P----YPFLSLEELLKEADVVSLHTPLTPETHRLLN  212 (311)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCSS-----------------S----SCBCCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCCccc-----------------c----cccCCHHHHHhhCCEEEEeCCCChHHHhhcC
Confidence            999999997 79999999999976431                 0    1246899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCCCCCCCCeEEcCCCCCCcHHHHHHHHH
Q 016620          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGMAT  334 (386)
Q Consensus       256 ~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~~~~~~~  334 (386)
                      ++.|+.||+|+++||+|||+++|+++|.++|+ |++.||++|||++||++ +++||++||+++|||++++|.++++++.+
T Consensus       213 ~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~  291 (311)
T 2cuk_A          213 RERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAE  291 (311)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHH
T ss_pred             HHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999 99999999999999975 47999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCC
Q 016620          335 LAALNVLGKIKGYPIWGNP  353 (386)
Q Consensus       335 ~~~~ni~~~~~g~~~~~~v  353 (386)
                      .+++|+.+|++|+++.|.|
T Consensus       292 ~~~~nl~~~~~g~~~~~~v  310 (311)
T 2cuk_A          292 VAVENLLAVLEGREPPNPV  310 (311)
T ss_dssp             HHHHHHHHHHTTCCCSSBC
T ss_pred             HHHHHHHHHHcCCCCCCcc
Confidence            9999999999999988765

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.8e-63  Score=484.90  Aligned_cols=312  Identities=25%  Similarity=0.373  Sum_probs=267.8

Q ss_pred             cEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEE
Q 016620           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (386)
Q Consensus        16 ~~vlvt~--~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~   92 (386)
                      |||++..  +.+ ..+++.+.+ .+.++.+....    ..+++.+.+. ++|+++++...++++++++++++.++|+|++
T Consensus         1 Mkil~~~~~~~~-~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   74 (333)
T 1dxy_A            1 MKIIAYGARVDE-IQYFKQWAKDTGNTLEYHTEF----LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTI   74 (333)
T ss_dssp             CEEEECSCCTTT-HHHHHHHHHHHCCEEEECSSC----CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEeccccC-HHHHHHHHHhCCeEEEEcCCC----ChHHHHHHhc-CCeEEEEcCCCCCCHHHHHhCcccCceEEEE
Confidence            5677743  333 345666643 46666543221    2235545454 5999999877789999999999834499999


Q ss_pred             ccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCC-CCCcccccccCCCeEEEE
Q 016620           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVI  171 (386)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w-~~~~~~g~~l~g~~vgIv  171 (386)
                      .|+|+|+||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|. | ..  ..+.++.|++||||
T Consensus        75 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~~--~~~~~l~g~~vgIi  151 (333)
T 1dxy_A           75 RNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE-KAGT--FIGKELGQQTVGVM  151 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHH-HHTC--CCCCCGGGSEEEEE
T ss_pred             cCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcc-cccC--CCccCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999984 5 22  35689999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhh
Q 016620          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (386)
Q Consensus       172 G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~  251 (386)
                      |+|.||+.+|+++ ++|||+|++||++.....                ...  ....++++++++||+|++|+|++++|+
T Consensus       152 G~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~----------------~~~--~~~~~l~ell~~aDvV~~~~P~~~~t~  212 (333)
T 1dxy_A          152 GTGHIGQVAIKLF-KGFGAKVIAYDPYPMKGD----------------HPD--FDYVSLEDLFKQSDVIDLHVPGIEQNT  212 (333)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSCCSSC----------------CTT--CEECCHHHHHHHCSEEEECCCCCGGGT
T ss_pred             CcCHHHHHHHHHH-HHCCCEEEEECCCcchhh----------------Hhc--cccCCHHHHHhcCCEEEEcCCCchhHH
Confidence            9999999999997 799999999999764310                001  123589999999999999999999999


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC-----------CC---CCCCCCCCeEE
Q 016620          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-----------MK---PGLSEMKNAIV  317 (386)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~-----------~~---~~L~~~~nvil  317 (386)
                      ++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||.           ++   +|||++|||++
T Consensus       213 ~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~  292 (333)
T 1dxy_A          213 HIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVL  292 (333)
T ss_dssp             TSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEE
T ss_pred             HHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEE
Confidence            99999999999999999999999999999999999999999999999999983           22   37999999999


Q ss_pred             cCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          318 VPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       318 TPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      |||+||+|.++++++.+.+++|+.+|++|+++.|.||.
T Consensus       293 TPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~~  330 (333)
T 1dxy_A          293 SPHIAYYTETAVHNMVYFSLQHLVDFLTKGETSTEVTG  330 (333)
T ss_dssp             CSSCTTCSHHHHHHHHHHHHHHHHHHHHHSCCTTEECC
T ss_pred             CCccccChHHHHHHHHHHHHHHHHHHHcCCCCCceeCC
Confidence            99999999999999999999999999999999999875

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=5.2e-62  Score=485.35  Aligned_cols=323  Identities=21%  Similarity=0.214  Sum_probs=272.7

Q ss_pred             CCCcEEEEeCCC----Cch-HHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhcc
Q 016620           13 NGKYRVVSTKPM----PGT-RWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRA   85 (386)
Q Consensus        13 ~~~~~vlvt~~~----~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~--~~~~~~~~l~~l~~l   85 (386)
                      +.+++++++...    +.+ .+.+.|++.++++.+.....  .+.+++.+.+. ++|++++..  ...+++++++++++|
T Consensus        38 ~~~~~v~l~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~--~~~~~l~~~l~-~ad~li~~~~~~~~i~~~~l~~~p~L  114 (393)
T 2nac_A           38 TPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKD--GPDSVFERELV-DADVVISQPFWPAYLTPERIAKAKNL  114 (393)
T ss_dssp             CCSCCSSCTTSCCSBTTTGGGCHHHHHHTTCEEEEESCCS--STTSHHHHHHT-TCSEEEEBTTBCCCBCHHHHHHCTTC
T ss_pred             CCceEEEECccccccCchhhHHHHHHHhCCCEEEEecCCC--CCHHHHHHhcc-CCCEEEEcCccCCCCCHHHHhhCCCC
Confidence            333345555533    333 34467788888876543322  24457777776 599998763  357899999999988


Q ss_pred             CCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCC
Q 016620           86 GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (386)
Q Consensus        86 ~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g  165 (386)
                        |+|++.|+|+|+||+++|+++||.|+|+|++++.+||||++++||++.|++..+++.+++|.|.. ......+.+++|
T Consensus       115 --k~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~g  191 (393)
T 2nac_A          115 --KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNI-ADCVSHAYDLEA  191 (393)
T ss_dssp             --CEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH-HHHHTTCCCCTT
T ss_pred             --cEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCc-cccccCCccCCC
Confidence              99999999999999999999999999999999999999999999999999999999999998742 111123578999


Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+.+|+++ ++|||+|++||++.......         ...+     .....++++++++||+|++|+|
T Consensus       192 ktvGIIGlG~IG~~vA~~l-~a~G~~V~~~d~~~~~~~~~---------~~~G-----~~~~~~l~ell~~aDvV~l~~P  256 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRL-APFDVHLHYTDRHRLPESVE---------KELN-----LTWHATREDMYPVCDVVTLNCP  256 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHH-GGGTCEEEEECSSCCCHHHH---------HHHT-----CEECSSHHHHGGGCSEEEECSC
T ss_pred             CEEEEEeECHHHHHHHHHH-HhCCCEEEEEcCCccchhhH---------hhcC-----ceecCCHHHHHhcCCEEEEecC
Confidence            9999999999999999997 79999999999876432110         0011     1223589999999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASA  324 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~  324 (386)
                      ++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++. +|||++|||++|||+|+.
T Consensus       257 lt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~  336 (393)
T 2nac_A          257 LHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGT  336 (393)
T ss_dssp             CCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTC
T ss_pred             CchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcC
Confidence            9999999999999999999999999999999999999999999999999999999999864 799999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC
Q 016620          325 SKWTREGMATLAALNVLGKIKGYPIWGNPNQV  356 (386)
Q Consensus       325 t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~  356 (386)
                      |.++++++...+++||++|++|+|+.|.++.+
T Consensus       337 T~e~~~~~~~~~~~nl~~~~~G~~~~~~~~~v  368 (393)
T 2nac_A          337 TLTAQARYAAGTREILECFFEGRPIRDEYLIV  368 (393)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCcceeEec
Confidence            99999999999999999999999999988743

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=2e-60  Score=464.06  Aligned_cols=313  Identities=28%  Similarity=0.465  Sum_probs=273.1

Q ss_pred             cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhc-cCCcEEEEcc
Q 016620           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSR-AGGKAFSNMA   94 (386)
Q Consensus        16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~-l~~k~i~~~~   94 (386)
                      +||+++.+++++ ..+.+++ .+++++... +...+.+++.+.+. ++|+++++..+++++++++++|+ |  |+|++.|
T Consensus         2 ~~vl~~~~~~~~-~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~L--k~I~~~~   75 (320)
T 1gdh_A            2 KKILITWPLPEA-AMARARE-SYDVIAHGD-DPKITIDEMIETAK-SVDALLITLNEKCRKEVIDRIPENI--KCISTYS   75 (320)
T ss_dssp             CEEEESSCCCHH-HHHHHHT-TSEEEECCS-TTCCCHHHHHHHHT-TCSEEEEETTSCBCHHHHHHSCTTC--CEEEEES
T ss_pred             cEEEEcCCCCHH-HHHHHHh-cCCEEEecC-CCCCCHHHHHHHhc-CCEEEEECCCCCCCHHHHHhCCccc--eEEEECC
Confidence            578888877664 4677765 346655332 22357888888886 59999988767899999999998 6  9999999


Q ss_pred             ccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 016620           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (386)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G  174 (386)
                      +|+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|.+....+.++.|++|||||+|
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G  155 (320)
T 1gdh_A           76 IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFG  155 (320)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             cccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999766543446789999999999999


Q ss_pred             hhHHHHHHHHHhcCCcEEEEEcC-ChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhc
Q 016620          175 RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (386)
Q Consensus       175 ~IG~~iA~~L~~~fg~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~l  253 (386)
                      .||+++|+++ ++||++|++||+ +.......          ..+     .....++++++++||+|++|+|++++|+++
T Consensus       156 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~~----------~~g-----~~~~~~l~ell~~aDvVil~~p~~~~t~~~  219 (320)
T 1gdh_A          156 SIGQALAKRA-QGFDMDIDYFDTHRASSSDEA----------SYQ-----ATFHDSLDSLLSVSQFFSLNAPSTPETRYF  219 (320)
T ss_dssp             HHHHHHHHHH-HTTTCEEEEECSSCCCHHHHH----------HHT-----CEECSSHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCcChhhhh----------hcC-----cEEcCCHHHHHhhCCEEEEeccCchHHHhh
Confidence            9999999997 799999999999 76542110          111     112348999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHH
Q 016620          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA  333 (386)
Q Consensus       254 i~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~  333 (386)
                      ++++.|+.||+|++|||+|||+++|+++|.++|++|++.||++|||++||..++|||++|||++|||++++|.++++++.
T Consensus       220 i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~~~~~  299 (320)
T 1gdh_A          220 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAREDMA  299 (320)
T ss_dssp             BSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHHHHHH
T ss_pred             cCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999556799999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCC
Q 016620          334 TLAALNVLGKIKGYPIWG  351 (386)
Q Consensus       334 ~~~~~ni~~~~~g~~~~~  351 (386)
                      ..+ +||.+|++|+++..
T Consensus       300 ~~~-~nl~~~~~g~~~~~  316 (320)
T 1gdh_A          300 HQA-NDLIDALFGGADMS  316 (320)
T ss_dssp             HHH-HHHHHHHHTTSCCT
T ss_pred             HHH-HHHHHHHcCCCCcc
Confidence            999 99999999988643

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=5.4e-61  Score=466.73  Aligned_cols=306  Identities=26%  Similarity=0.441  Sum_probs=272.1

Q ss_pred             CcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcc
Q 016620           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (386)
Q Consensus        15 ~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~   94 (386)
                      +|||+++.++++ .+.+.+++.++++..  .  ...+.+++.+.+. ++|++++....++++++++++|+|  |+|++.|
T Consensus         5 ~mkil~~~~~~~-~~~~~l~~~~~~v~~--~--~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   76 (313)
T 2ekl_A            5 TVKALITDPIDE-ILIKTLREKGIQVDY--M--PEISKEELLNIIG-NYDIIVVRSRTKVTKDVIEKGKKL--KIIARAG   76 (313)
T ss_dssp             CCEEEECSCCCH-HHHHHHHHTTCEEEE--C--TTCCHHHHHHHGG-GCSEEEECSSSCBCHHHHHHCTTC--CEEEECS
T ss_pred             ceEEEEECCCCH-HHHHHHHhCCcEEEe--C--CCCCHHHHHHHhc-CCeEEEEcCCCCCCHHHHhhCCCC--eEEEEcC
Confidence            378999887765 456788877766532  2  1347788888776 599999876667999999999988  9999999


Q ss_pred             ccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 016620           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (386)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G  174 (386)
                      +|+|++|+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..     ..+.++.|++|||||+|
T Consensus        77 ~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~-----~~~~~l~g~~vgIIG~G  151 (313)
T 2ekl_A           77 IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK-----IEGLELAGKTIGIVGFG  151 (313)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC-----CCCCCCTTCEEEEESCS
T ss_pred             CCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC-----CCCCCCCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999998741     34679999999999999


Q ss_pred             hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcc
Q 016620          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (386)
Q Consensus       175 ~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li  254 (386)
                      .||+++|+++ ++||++|++||++......          ...+     .. ..++++++++||+|++|+|++++|++++
T Consensus       152 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~----------~~~g-----~~-~~~l~ell~~aDvVvl~~P~~~~t~~li  214 (313)
T 2ekl_A          152 RIGTKVGIIA-NAMGMKVLAYDILDIREKA----------EKIN-----AK-AVSLEELLKNSDVISLHVTVSKDAKPII  214 (313)
T ss_dssp             HHHHHHHHHH-HHTTCEEEEECSSCCHHHH----------HHTT-----CE-ECCHHHHHHHCSEEEECCCCCTTSCCSB
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCcchhHH----------HhcC-----ce-ecCHHHHHhhCCEEEEeccCChHHHHhh
Confidence            9999999997 7999999999998754211          0111     11 2489999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC---CCCCCCCeEEcCCCCCCcHHHHHH
Q 016620          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP---GLSEMKNAIVVPHIASASKWTREG  331 (386)
Q Consensus       255 ~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~---~L~~~~nvilTPHia~~t~~~~~~  331 (386)
                      +++.|+.||+|+++||+|||+++|+++|.++|++|++.||++|||++||++++   |||++|||++|||++++|.+++++
T Consensus       215 ~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~~~  294 (313)
T 2ekl_A          215 DYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKR  294 (313)
T ss_dssp             CHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHHHH
T ss_pred             CHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999877   999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCC
Q 016620          332 MATLAALNVLGKIKGYPIW  350 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g~~~~  350 (386)
                      +.+.+++|+.+|++|+|+.
T Consensus       295 ~~~~~~~n~~~~~~g~~l~  313 (313)
T 2ekl_A          295 VAEMTTQNLLNAMKELGMI  313 (313)
T ss_dssp             HHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHcCCCCC
Confidence            9999999999999999874

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.9e-60  Score=461.77  Aligned_cols=305  Identities=33%  Similarity=0.536  Sum_probs=267.6

Q ss_pred             CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      ++|||+++.+++++ ..+.+++.++++..  ..  ..+.+++.+.+. ++|+++++...++++++++++|+|  |+|++.
T Consensus         2 ~~~~il~~~~~~~~-~~~~l~~~~~~~~~--~~--~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~   73 (307)
T 1wwk_A            2 KRMKVLVAAPLHEK-AIQVLKDAGLEVIY--EE--YPDEDRLVELVK-DVEAIIVRSKPKVTRRVIESAPKL--KVIARA   73 (307)
T ss_dssp             --CEEEECSCCCHH-HHHHHHHTTCEEEE--CS--SCCHHHHHHHST-TCSEEEESSCSCBCHHHHTTCTTC--CEEEES
T ss_pred             CceEEEEeCCCCHH-HHHHHHhCCeEEEe--CC--CCCHHHHHHHhc-CCEEEEEcCCCCCCHHHHhhCCCC--eEEEEC
Confidence            35789998877653 46778776666542  22  247788887776 599999876667999999999988  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~  173 (386)
                      |+|+|+||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|..   ....+.++.|++|||||+
T Consensus        74 ~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~~~l~g~~vgIiG~  150 (307)
T 1wwk_A           74 GVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAK---KEAMGIELEGKTIGIIGF  150 (307)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCT---TTCCBCCCTTCEEEEECC
T ss_pred             CccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc---cCcCCcccCCceEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999998752   123568999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhc
Q 016620          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (386)
Q Consensus       174 G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~l  253 (386)
                      |.||+++|+++ ++||++|++||++......          ...+     . ...++++++++||+|++|+|++++|+++
T Consensus       151 G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~----------~~~g-----~-~~~~l~ell~~aDvV~l~~p~~~~t~~l  213 (307)
T 1wwk_A          151 GRIGYQVAKIA-NALGMNILLYDPYPNEERA----------KEVN-----G-KFVDLETLLKESDVVTIHVPLVESTYHL  213 (307)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHH----------HHTT-----C-EECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCChhhH----------hhcC-----c-cccCHHHHHhhCCEEEEecCCChHHhhh
Confidence            99999999997 7999999999998754211          1111     1 1348999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCCCCCCCCeEEcCCCCCCcHHHHHHH
Q 016620          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAIVVPHIASASKWTREGM  332 (386)
Q Consensus       254 i~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvilTPHia~~t~~~~~~~  332 (386)
                      |+++.|+.||+|++|||+|||+++|+++|.++|++|++.||++|||++||++ ++|||++||+++|||++++|.++++++
T Consensus       214 i~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~  293 (307)
T 1wwk_A          214 INEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERA  293 (307)
T ss_dssp             BCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHH
T ss_pred             cCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999984 579999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcC
Q 016620          333 ATLAALNVLGKIKG  346 (386)
Q Consensus       333 ~~~~~~ni~~~~~g  346 (386)
                      .+.+++|+.+|++|
T Consensus       294 ~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          294 GVEVAEKVVKILKG  307 (307)
T ss_dssp             HHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcC
Confidence            99999999999986

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=4.6e-62  Score=483.07  Aligned_cols=324  Identities=21%  Similarity=0.210  Sum_probs=271.5

Q ss_pred             cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCcEEEEc
Q 016620           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~--~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      .+||....... .+.+.+++.++++.+.....  .+.+++.+.+. ++|++++..  ...+++++++++++|  |+|++.
T Consensus        18 ~~vl~~d~~~~-~~~~~l~~~~~~v~~~~~~~--~~~~~~~~~~~-~~d~~i~~~~~~~~~~~~~l~~~~~L--k~I~~~   91 (364)
T 2j6i_A           18 EKLYGCTENKL-GIANWLKDQGHELITTSDKE--GGNSVLDQHIP-DADIIITTPFHPAYITKERIDKAKKL--KLVVVA   91 (364)
T ss_dssp             TTCTTBTTTGG-GCHHHHHHTTCEEEEESCCS--STTSHHHHHGG-GCSEEEECTTSCCCBCHHHHHHCTTC--CEEEES
T ss_pred             ceEEEecCccH-HHHHHHHhCCCEEEEcCCCC--CCHHHHHHHhh-CCeEEEecCcCCCCCCHHHHhhCCCC--eEEEEC
Confidence            44555444333 24567777888876543322  24567777776 599998754  346899999999987  999999


Q ss_pred             cccccccChhHHhhC--CcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEE
Q 016620           94 AVGYNNVDVNAANKY--GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (386)
Q Consensus        94 ~~G~d~id~~~~~~~--gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIv  171 (386)
                      |+|+|+||+++++++  ||.|+|+||+++.+||||++++||++.|++..+++.+++|.|.. ......+.+++|++||||
T Consensus        92 ~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~-~~~~~~~~~l~g~tvgII  170 (364)
T 2j6i_A           92 GVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEV-AAIAKDAYDIEGKTIATI  170 (364)
T ss_dssp             SSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCH-HHHHTTCCCSTTCEEEEE
T ss_pred             CcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCc-CcccCCcccCCCCEEEEE
Confidence            999999999999999  99999999999999999999999999999999999999998741 111124679999999999


Q ss_pred             ecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhh
Q 016620          172 GAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (386)
Q Consensus       172 G~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t  250 (386)
                      |+|.||+.+|+++ ++|||+ |++||++.......         ...+     .....++++++++||+|++|+|++++|
T Consensus       171 G~G~IG~~vA~~l-~~~G~~~V~~~d~~~~~~~~~---------~~~g-----~~~~~~l~ell~~aDvV~l~~P~t~~t  235 (364)
T 2j6i_A          171 GAGRIGYRVLERL-VPFNPKELLYYDYQALPKDAE---------EKVG-----ARRVENIEELVAQADIVTVNAPLHAGT  235 (364)
T ss_dssp             CCSHHHHHHHHHH-GGGCCSEEEEECSSCCCHHHH---------HHTT-----EEECSSHHHHHHTCSEEEECCCCSTTT
T ss_pred             CcCHHHHHHHHHH-HhCCCcEEEEECCCccchhHH---------HhcC-----cEecCCHHHHHhcCCEEEECCCCChHH
Confidence            9999999999997 799997 99999876332110         0111     222358999999999999999999999


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCC--C---CeEEcCCCCCC
Q 016620          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM--K---NAIVVPHIASA  324 (386)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~--~---nvilTPHia~~  324 (386)
                      +++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+||||++||++. +|||++  |   ||++|||+||+
T Consensus       236 ~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~  315 (364)
T 2j6i_A          236 KGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGT  315 (364)
T ss_dssp             TTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGG
T ss_pred             HHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcC
Confidence            99999999999999999999999999999999999999999999999999999865 699999  9   99999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCC---CCCCCCCCCCcCCC
Q 016620          325 SKWTREGMATLAALNVLGKIKGY---PIWGNPNQVEPFLN  361 (386)
Q Consensus       325 t~~~~~~~~~~~~~ni~~~~~g~---~~~~~v~~~~~~~~  361 (386)
                      |.+++.++.+.+++||.+|++|+   ++.|.||.-++|.+
T Consensus       316 t~e~~~~~~~~~~~nl~~~~~g~~~~~~~n~v~~~~~y~~  355 (364)
T 2j6i_A          316 TLDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGT  355 (364)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHTTCCCCCGGGEEEBTTBC--
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCCCCCceecCCcCcch
Confidence            99999999999999999999999   56666666556665

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=3.4e-60  Score=464.29  Aligned_cols=310  Identities=29%  Similarity=0.438  Sum_probs=272.2

Q ss_pred             CcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHH-HHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVED-IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        15 ~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e-~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      +++|+++.++++ .+.+.|++. +++......   .+.++ +.+.+. ++|++++....++++++++++|+|  |+|++.
T Consensus        23 ~~~vl~~~~~~~-~~~~~l~~~-~~~~~~~~~---~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~   94 (333)
T 3ba1_A           23 AIGVLMMCPMST-YLEQELDKR-FKLFRYWTQ---PAQRDFLALQAE-SIRAVVGNSNAGADAELIDALPKL--EIVSSF   94 (333)
T ss_dssp             CCEEEECSCCCH-HHHHHHHHH-SEEEEGGGC---SSHHHHHHHHTT-TEEEEEECSSSCBCHHHHHHCTTC--CEEEES
T ss_pred             CCEEEEeCCCCH-HHHHHHHhc-CCEEEecCC---CChHHHHHHHhC-CCEEEEEcCCCCCCHHHHhhCCCC--cEEEEc
Confidence            468999888765 456777653 455432221   24455 445454 699999877778999999999988  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~  173 (386)
                      |+|+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|. +. ....|.+++|++|||||+
T Consensus        95 ~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~-~~~~~~~l~g~~vgIIG~  172 (333)
T 3ba1_A           95 SVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK-FG-DFKLTTKFSGKRVGIIGL  172 (333)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGG-GC-CCCCCCCCTTCCEEEECC
T ss_pred             CccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC-cc-ccccccccCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999985 21 223468999999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhc
Q 016620          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (386)
Q Consensus       174 G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~l  253 (386)
                      |.||+.+|+++ ++||++|++||++....                 .  +.....++++++++||+|++|+|++++|+++
T Consensus       173 G~iG~~vA~~l-~~~G~~V~~~dr~~~~~-----------------~--g~~~~~~l~ell~~aDvVil~vP~~~~t~~l  232 (333)
T 3ba1_A          173 GRIGLAVAERA-EAFDCPISYFSRSKKPN-----------------T--NYTYYGSVVELASNSDILVVACPLTPETTHI  232 (333)
T ss_dssp             SHHHHHHHHHH-HTTTCCEEEECSSCCTT-----------------C--CSEEESCHHHHHHTCSEEEECSCCCGGGTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCchhc-----------------c--CceecCCHHHHHhcCCEEEEecCCChHHHHH
Confidence            99999999997 69999999999876431                 0  1223468999999999999999999999999


Q ss_pred             ccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHH
Q 016620          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMA  333 (386)
Q Consensus       254 i~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~  333 (386)
                      ++++.++.||+|++|||+|||.++|+++|.++|++|++.||++|||++||++.++||++|||++|||+|+.|.++++++.
T Consensus       233 i~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~~~~~  312 (333)
T 3ba1_A          233 INREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETRKVMA  312 (333)
T ss_dssp             BCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHHHHHH
T ss_pred             hhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888899999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCCC
Q 016620          334 TLAALNVLGKIKGYPIWGNPN  354 (386)
Q Consensus       334 ~~~~~ni~~~~~g~~~~~~v~  354 (386)
                      +.+++|+.+|++|+++.|.||
T Consensus       313 ~~~~~nl~~~~~g~~~~~~Vn  333 (333)
T 3ba1_A          313 DLVVGNLEAHFSGKPLLTPVV  333 (333)
T ss_dssp             HHHHHHHHHHHHTCCCSSBCC
T ss_pred             HHHHHHHHHHHcCCCCCCCCC
Confidence            999999999999999999886

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=2.9e-59  Score=457.94  Aligned_cols=323  Identities=33%  Similarity=0.458  Sum_probs=280.6

Q ss_pred             CCCCcEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHh-hccCCcE
Q 016620           12 PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKA   89 (386)
Q Consensus        12 ~~~~~~vlvt~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l-~~l~~k~   89 (386)
                      |+++|||+++.++++ .+.+.+++. ++++.... .+...+.+++.+.+. ++|+++++...++++++++++ ++|  |+
T Consensus         5 ~~~~~~il~~~~~~~-~~~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~l~~~~~~L--k~   79 (330)
T 2gcg_A            5 PVRLMKVFVTRRIPA-EGRVALARAADCEVEQWD-SDEPIPAKELERGVA-GAHGLLCLLSDHVDKRILDAAGANL--KV   79 (330)
T ss_dssp             --CCEEEEESSCCCH-HHHHHHHHCTTEEEEECC-SSSCCCHHHHHHHHT-TCSEEEECTTSCBCHHHHHHHCTTC--CE
T ss_pred             CCCCCEEEEECCCCH-HHHHHHHhcCCceEEEec-CCCCCCHHHHHHHhc-CCeEEEECCCCCCCHHHHHhcCCCc--eE
Confidence            556789999887765 457777765 35554432 222357888888886 599999876678999999999 887  99


Q ss_pred             EEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEE
Q 016620           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (386)
Q Consensus        90 i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vg  169 (386)
                      |++.|+|+|++|+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|..|.+....|.++.|++||
T Consensus        80 I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vg  159 (330)
T 2gcg_A           80 ISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVG  159 (330)
T ss_dssp             EEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEE
T ss_pred             EEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEE
Confidence            99999999999999999999999999999999999999999999999999999999999997765444567899999999


Q ss_pred             EEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh
Q 016620          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (386)
Q Consensus       170 IvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~  249 (386)
                      |||+|.||+.+|+++ +++|++|++||++.......         ...+     .. ..++++++++||+|++|+|.+++
T Consensus       160 IIG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~---------~~~g-----~~-~~~l~e~l~~aDvVi~~vp~~~~  223 (330)
T 2gcg_A          160 IIGLGRIGQAIARRL-KPFGVQRFLYTGRQPRPEEA---------AEFQ-----AE-FVSTPELAAQSDFIVVACSLTPA  223 (330)
T ss_dssp             EECCSHHHHHHHHHH-GGGTCCEEEEESSSCCHHHH---------HTTT-----CE-ECCHHHHHHHCSEEEECCCCCTT
T ss_pred             EECcCHHHHHHHHHH-HHCCCEEEEECCCCcchhHH---------HhcC-----ce-eCCHHHHHhhCCEEEEeCCCChH
Confidence            999999999999997 69999999999876431110         0111     11 23899999999999999999999


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCCCcHHH
Q 016620          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIASASKWT  328 (386)
Q Consensus       250 t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~~t~~~  328 (386)
                      |+++++++.++.||+|++|||+|||.++|+++|.++|++|++.||++|||++||++. +|||+++||++|||+|+.|.++
T Consensus       224 t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~  303 (330)
T 2gcg_A          224 TEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRT  303 (330)
T ss_dssp             TTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHH
T ss_pred             HHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHH
Confidence            999999999999999999999999999999999999999999999999999999754 6999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          329 REGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       329 ~~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      ++++...+++|+.+|++|+++.|.||.
T Consensus       304 ~~~~~~~~~~n~~~~~~g~~~~~~v~~  330 (330)
T 2gcg_A          304 RNTMSLLAANNLLAGLRGEPMPSELKL  330 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCCTTEECC
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999999999999998874

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=2.2e-58  Score=452.25  Aligned_cols=317  Identities=39%  Similarity=0.619  Sum_probs=277.4

Q ss_pred             CcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcc
Q 016620           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (386)
Q Consensus        15 ~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~   94 (386)
                      ++||+++.++++ .+.+.+++. +++++... ....+.+++.+.+. ++|+++++...++++++++++|+|  |+|++.|
T Consensus         2 ~~~il~~~~~~~-~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~-~~d~~~~~~~~~~~~~~l~~~~~L--k~I~~~~   75 (334)
T 2dbq_A            2 KPKVFITREIPE-VGIKMLEDE-FEVEVWGD-EKEIPREILLKKVK-EVDALVTMLSERIDKEVFENAPKL--RIVANYA   75 (334)
T ss_dssp             CCEEEESSCCCH-HHHHHHHTT-SEEEECCC-SSCCCHHHHHHHTT-SCSEEEECTTSCBCHHHHHTCTTC--CEEEESS
T ss_pred             CcEEEEecCCCH-HHHHHHHhc-CCEEEecC-CCCCCHHHHHHHhc-CcEEEEEcCCCCCCHHHHhhCCCc--eEEEECC
Confidence            457888877765 456777654 46654332 22357888888776 599999887778999999999988  9999999


Q ss_pred             ccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccC----CCCCCcccccccCCCeEEE
Q 016620           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGV  170 (386)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~----~w~~~~~~g~~l~g~~vgI  170 (386)
                      +|+|+||+++++++||.|+|+||+++.+||||+++++|++.|++..+++.+++|.|.    .|.+....|.++.|++|||
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgI  155 (334)
T 2dbq_A           76 VGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGI  155 (334)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEE
T ss_pred             cccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999996    5654334578999999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhh
Q 016620          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (386)
Q Consensus       171 vG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t  250 (386)
                      ||+|.||+.+|+++ ++||++|++||++......   .       ..+     . ...++++++++||+|++|+|.+++|
T Consensus       156 IG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~---~-------~~g-----~-~~~~l~~~l~~aDvVil~vp~~~~t  218 (334)
T 2dbq_A          156 IGLGRIGQAIAKRA-KGFNMRILYYSRTRKEEVE---R-------ELN-----A-EFKPLEDLLRESDFVVLAVPLTRET  218 (334)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---H-------HHC-----C-EECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HhCCCEEEEECCCcchhhH---h-------hcC-----c-ccCCHHHHHhhCCEEEECCCCChHH
Confidence            99999999999997 6999999999998754211   0       111     1 1358999999999999999999999


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHH
Q 016620          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTRE  330 (386)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~  330 (386)
                      +++++++.++.||+|++|||+|||.++|+++|.++|++|++.||++|||++||...++||++|||++|||+|+.|.++.+
T Consensus       219 ~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~~  298 (334)
T 2dbq_A          219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGARE  298 (334)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHHH
T ss_pred             HHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999445689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHcCCCCCCCCC
Q 016620          331 GMATLAALNVLGKIKGYPIWGNPN  354 (386)
Q Consensus       331 ~~~~~~~~ni~~~~~g~~~~~~v~  354 (386)
                      ++.+.+++||.+|++|+++.|.||
T Consensus       299 ~~~~~~~~n~~~~~~g~~~~~~v~  322 (334)
T 2dbq_A          299 GMAELVAKNLIAFKRGEIPPTLVN  322 (334)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred             HHHHHHHHHHHHHHcCCCCccccC
Confidence            999999999999999999999887

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.8e-58  Score=452.62  Aligned_cols=313  Identities=31%  Similarity=0.462  Sum_probs=275.1

Q ss_pred             CcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcc
Q 016620           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (386)
Q Consensus        15 ~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~   94 (386)
                      ++||+++.+++++ ..+.+++. +++++..    ..+.+++.+.+. ++|++++....++++++++++|+|  |+|++.|
T Consensus         2 ~~~il~~~~~~~~-~~~~l~~~-~~~~~~~----~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (333)
T 2d0i_A            2 RPKVGVLLKMKRE-ALEELKKY-ADVEIIL----YPSGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHS   72 (333)
T ss_dssp             CSEEEECSCCCHH-HHHHHHTT-SEEEECC----SCCHHHHHHHGG-GCSEEEECTTSCBCHHHHTTCTTC--CEEEESS
T ss_pred             CcEEEEECCCCHH-HHHHHHhc-CCEEEeC----CCCHHHHHHHhc-CCEEEEECCCCCCCHHHHhhCCCc--eEEEECC
Confidence            4688888877754 46777654 4665532    257888888776 599999776778999999999988  9999999


Q ss_pred             ccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc----cccCCCeEEE
Q 016620           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQTVGV  170 (386)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g----~~l~g~~vgI  170 (386)
                      +|+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..|. ....|    .++.|++|||
T Consensus        73 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~~~~~l~g~~vgI  151 (333)
T 2d0i_A           73 AGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHA-KIWTGFKRIESLYGKKVGI  151 (333)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHH-HHHTTSCCCCCSTTCEEEE
T ss_pred             cccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCc-ccccCCcccCCCCcCEEEE
Confidence            999999999999999999999999999999999999999999999999999999985432 11245    7899999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhh
Q 016620          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (386)
Q Consensus       171 vG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t  250 (386)
                      ||+|.||+.+|+++ ++||++|++||++.......          ..+     . ...++++++++||+|++|+|.+++|
T Consensus       152 IG~G~iG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~~g-----~-~~~~l~e~l~~aDiVil~vp~~~~t  214 (333)
T 2d0i_A          152 LGMGAIGKAIARRL-IPFGVKLYYWSRHRKVNVEK----------ELK-----A-RYMDIDELLEKSDIVILALPLTRDT  214 (333)
T ss_dssp             ECCSHHHHHHHHHH-GGGTCEEEEECSSCCHHHHH----------HHT-----E-EECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HHCCCEEEEECCCcchhhhh----------hcC-----c-eecCHHHHHhhCCEEEEcCCCChHH
Confidence            99999999999997 79999999999987542110          001     1 1248999999999999999999999


Q ss_pred             hhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCC-CeEEcCCCCCCcHHHH
Q 016620          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK-NAIVVPHIASASKWTR  329 (386)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~-nvilTPHia~~t~~~~  329 (386)
                      +++++++.++.||+| +|||+|||.++|+++|.++|++|++.||++|||++||+++++||++| ||++|||+++.|.++.
T Consensus       215 ~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~  293 (333)
T 2d0i_A          215 YHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQ  293 (333)
T ss_dssp             TTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHH
T ss_pred             HHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHH
Confidence            999999999999999 99999999999999999999999999999999999998877999999 9999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCCCCCC
Q 016620          330 EGMATLAALNVLGKIKGYPIWGNPNQ  355 (386)
Q Consensus       330 ~~~~~~~~~ni~~~~~g~~~~~~v~~  355 (386)
                      +++.+.+++|+.+|++|+++.|.||.
T Consensus       294 ~~~~~~~~~n~~~~~~g~~~~~~v~~  319 (333)
T 2d0i_A          294 EDVGFRAVENLLKVLRGEVPEDLVNK  319 (333)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCTTBSCT
T ss_pred             HHHHHHHHHHHHHHHcCCCCcCccCH
Confidence            99999999999999999999999974

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.1e-58  Score=455.68  Aligned_cols=317  Identities=27%  Similarity=0.374  Sum_probs=262.7

Q ss_pred             CCCcEEEEeCCC-CchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEE
Q 016620           13 NGKYRVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (386)
Q Consensus        13 ~~~~~vlvt~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~   91 (386)
                      ..++++++.... ...+ .+.++. ..++..+.    ..+.+|+.+...+++|+++++...+++++.++++++|  |+|+
T Consensus        19 ~~kp~i~~l~~~~~~~~-~~~l~~-~~~~~~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--k~I~   90 (347)
T 1mx3_A           19 SHMPLVALLDGRDCTVE-MPILKD-VATVAFCD----AQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RIIV   90 (347)
T ss_dssp             --CCEEEESSCSCCTTT-HHHHTT-TCEEEECC----CSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEEE
T ss_pred             CCCCEEEEEcCCcchhh-HHHhhc-cceEEecC----CCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCC--CEEE
Confidence            456777665421 1223 455544 34554332    1245666555322478888777778999999999988  9999


Q ss_pred             EccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCC----cc-cccccCCC
Q 016620           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN----LF-VGNLLKGQ  166 (386)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~----~~-~g~~l~g~  166 (386)
                      +.|+|+|+||+++++++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|.. ...    .. .+.+++|+
T Consensus        91 ~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~-~~~~~~~~~~~~~~l~g~  169 (347)
T 1mx3_A           91 RIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQ-SVEQIREVASGAARIRGE  169 (347)
T ss_dssp             ESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCC-SHHHHHHHTTTCCCCTTC
T ss_pred             EcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCccc-ccccccccccCccCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999842 110    01 12689999


Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPl  246 (386)
                      +|||||+|.||+.+|+++ ++|||+|++||++.......          ..+     .....+++|++++||+|++|+|+
T Consensus       170 tvGIIG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~~g-----~~~~~~l~ell~~aDvV~l~~P~  233 (347)
T 1mx3_A          170 TLGIIGLGRVGQAVALRA-KAFGFNVLFYDPYLSDGVER----------ALG-----LQRVSTLQDLLFHSDCVTLHCGL  233 (347)
T ss_dssp             EEEEECCSHHHHHHHHHH-HTTTCEEEEECTTSCTTHHH----------HHT-----CEECSSHHHHHHHCSEEEECCCC
T ss_pred             EEEEEeECHHHHHHHHHH-HHCCCEEEEECCCcchhhHh----------hcC-----CeecCCHHHHHhcCCEEEEcCCC
Confidence            999999999999999997 79999999999876432111          011     12235899999999999999999


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC--CCCCCCCCCeEEcCCCCCC
Q 016620          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIASA  324 (386)
Q Consensus       247 t~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~--~~~L~~~~nvilTPHia~~  324 (386)
                      +++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|++.||++|||+.||++  .++||.+||+++|||++++
T Consensus       234 t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~  313 (347)
T 1mx3_A          234 NEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWY  313 (347)
T ss_dssp             CTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTC
T ss_pred             CHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHH
Confidence            99999999999999999999999999999999999999999999999999999999986  3689999999999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016620          325 SKWTREGMATLAALNVLGKIKGYPIWGNPN  354 (386)
Q Consensus       325 t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~  354 (386)
                      |.++++++.+.+++||.+|++|+++.+..|
T Consensus       314 t~~~~~~~~~~~~~ni~~~~~g~~~~~l~~  343 (347)
T 1mx3_A          314 SEQASIEMREEAAREIRRAITGRIPDSLKN  343 (347)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHSCTTTTCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCcccCC
Confidence            999999999999999999999987663333

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=2e-58  Score=454.84  Aligned_cols=324  Identities=26%  Similarity=0.348  Sum_probs=272.2

Q ss_pred             CcEEEEeCC-CC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhc----CCCcEEEec------CCccccHHHHHHh
Q 016620           15 KYRVVSTKP-MP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG----DKCDGVIGQ------LTEDWGETLFAAL   82 (386)
Q Consensus        15 ~~~vlvt~~-~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~----~~ad~vi~~------~~~~~~~~~l~~l   82 (386)
                      ++|||++.+ ++ .....+.|++. +++...  .  ..+.+++.+.+.    +++|+++..      ...++++++++++
T Consensus         3 ~~~vl~~~~~~~~~~~~~~~l~~~-~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~   77 (348)
T 2w2k_A            3 RPRVLLLGDPARHLDDLWSDFQQK-FEVIPA--N--LTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHL   77 (348)
T ss_dssp             CCEEEECSSCCSSCHHHHHHHHHH-SEEEEC--C--CCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTS
T ss_pred             CcEEEEECCccccChHHHHHHHhc-ceEEec--C--CCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhc
Confidence            568888776 43 22334566543 455432  2  247888888876    258988764      2458999999999


Q ss_pred             h-ccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCc---cCC-CCCCc
Q 016620           83 S-RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL---YDG-WLPNL  157 (386)
Q Consensus        83 ~-~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~---~~~-w~~~~  157 (386)
                      | +|  |+|++.|+|+|+||+++|+++||.|+|+||+++.+||||++++||++.|++..+++.+++|.   |.. +....
T Consensus        78 ~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~  155 (348)
T 2w2k_A           78 PSSL--KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIG  155 (348)
T ss_dssp             CTTC--CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             ccCc--eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccccc
Confidence            8 47  99999999999999999999999999999999999999999999999999999999999998   731 10011


Q ss_pred             ccccccCCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          158 FVGNLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       158 ~~g~~l~g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      ..|.+++|++|||||+|.||+.+|+++ + +||++|++||++.......         ...+     .....++++++++
T Consensus       156 ~~~~~l~g~~vgIIG~G~IG~~vA~~l-~~~~G~~V~~~d~~~~~~~~~---------~~~g-----~~~~~~l~ell~~  220 (348)
T 2w2k_A          156 KSAHNPRGHVLGAVGLGAIQKEIARKA-VHGLGMKLVYYDVAPADAETE---------KALG-----AERVDSLEELARR  220 (348)
T ss_dssp             TTCCCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHH---------HHHT-----CEECSSHHHHHHH
T ss_pred             ccCcCCCCCEEEEEEECHHHHHHHHHH-HHhcCCEEEEECCCCcchhhH---------hhcC-----cEEeCCHHHHhcc
Confidence            246789999999999999999999997 7 9999999999986432110         0001     1123489999999


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeE
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAI  316 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvi  316 (386)
                      ||+|++|+|++++|+++++++.++.||+|++|||+|||+++|+++|.++|++|++.||++|||++||.++++|+++|||+
T Consensus       221 aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~nvi  300 (348)
T 2w2k_A          221 SDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKHVT  300 (348)
T ss_dssp             CSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSSEE
T ss_pred             CCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999995556899999999


Q ss_pred             EcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCC
Q 016620          317 VVPHIASASKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNE  362 (386)
Q Consensus       317 lTPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~~~~  362 (386)
                      +|||+++.|.+++.++.+.+++||.+|++|+++.|.||.  |.+.+
T Consensus       301 ltPH~~~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~v~~--~~~~~  344 (348)
T 2w2k_A          301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAG--KVFAP  344 (348)
T ss_dssp             ECCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCSSBCS--CCCCC
T ss_pred             EcCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCcceecc--cccCc
Confidence            999999999999999999999999999999999999985  54444

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=2e-57  Score=470.46  Aligned_cols=333  Identities=29%  Similarity=0.375  Sum_probs=291.7

Q ss_pred             CcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcc
Q 016620           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (386)
Q Consensus        15 ~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~   94 (386)
                      +|||+++.++++. ..+.|++. +++++..    ..+.+++.+.+. ++|+++++..+++++++++++++|  |+|++.|
T Consensus         4 ~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~----~~~~~~~~~~~~-~~d~li~~~~~~~~~~~l~~~~~L--k~i~~~~   74 (529)
T 1ygy_A            4 LPVVLIADKLAPS-TVAALGDQ-VEVRWVD----GPDRDKLLAAVP-EADALLVRSATTVDAEVLAAAPKL--KIVARAG   74 (529)
T ss_dssp             CCEEEECSSCCGG-GGTTSCSS-SEEEECC----TTSHHHHHHHGG-GCSEEEECSSSCBCHHHHHTCTTC--CEEEESS
T ss_pred             CcEEEEeCCCCHH-HHHHHhcC-ceEEEcC----CCCHHHHHHHhc-CCEEEEEcCCCCCCHHHHhhCCCC--cEEEECC
Confidence            4678887777653 35556554 5665432    247888888887 599999987778999999999988  9999999


Q ss_pred             ccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC
Q 016620           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (386)
Q Consensus        95 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G  174 (386)
                      +|+|++|+++|+++||.|+|+|++++.+||||++++||++.|+++.+++.+++|.|..   ..+.|.+++|++|||||+|
T Consensus        75 ~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~---~~~~~~~l~g~~vgIIG~G  151 (529)
T 1ygy_A           75 VGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKR---SSFSGTEIFGKTVGVVGLG  151 (529)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---GGCCBCCCTTCEEEEECCS
T ss_pred             cCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcc---cCcCccccCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999998752   2345789999999999999


Q ss_pred             hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcc
Q 016620          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (386)
Q Consensus       175 ~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li  254 (386)
                      .||+++|++| ++||++|++||++......          ...+     .. ..++++++++||+|++|+|.+++|.+++
T Consensus       152 ~IG~~vA~~l-~~~G~~V~~~d~~~~~~~a----------~~~g-----~~-~~~l~e~~~~aDvV~l~~P~~~~t~~~i  214 (529)
T 1ygy_A          152 RIGQLVAQRI-AAFGAYVVAYDPYVSPARA----------AQLG-----IE-LLSLDDLLARADFISVHLPKTPETAGLI  214 (529)
T ss_dssp             HHHHHHHHHH-HTTTCEEEEECTTSCHHHH----------HHHT-----CE-ECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             HHHHHHHHHH-HhCCCEEEEECCCCChhHH----------HhcC-----cE-EcCHHHHHhcCCEEEECCCCchHHHHHh
Confidence            9999999997 7999999999997643111          0111     11 2489999999999999999999999999


Q ss_pred             cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHHHHH
Q 016620          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREGMAT  334 (386)
Q Consensus       255 ~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~~~~  334 (386)
                      +++.++.||+|+++||+|||.++|+++|.++|++|++.||++|||+.||..++|||+++|+++|||+++.|.++.+++..
T Consensus       215 ~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~~~~~~  294 (529)
T 1ygy_A          215 DKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQDRAGT  294 (529)
T ss_dssp             CHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHHHHHHH
T ss_pred             CHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCC
Q 016620          335 LAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGL  381 (386)
Q Consensus       335 ~~~~ni~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (386)
                      .+++|+.+|+.|+++.|.||.  +.  ++ ....+.||+.|++++|.
T Consensus       295 ~~~~~l~~~l~~~~~~~~v~~--~~--~~-~hd~i~P~l~La~~lg~  336 (529)
T 1ygy_A          295 DVAESVRLALAGEFVPDAVNV--GG--GV-VNEEVAPWLDLVRKLGV  336 (529)
T ss_dssp             HHHHHHHHHHTTCCCTTBCSC--CS--TT-SCTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCcccCC--cc--cc-cchhhhhHHHHHHHHHH
Confidence            999999999999999999976  43  54 67888999999998873

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=4.7e-58  Score=443.93  Aligned_cols=297  Identities=22%  Similarity=0.311  Sum_probs=258.2

Q ss_pred             cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      |||+++.++++ .+.+.|++.++++  . .       +    .+ .++|+++++.   .+.+.++++|+|  |+|++.|+
T Consensus         1 m~il~~~~~~~-~~~~~l~~~~~~v--~-~-------~----~~-~~~d~~i~~~---~~~~~l~~~~~L--k~I~~~~~   59 (303)
T 1qp8_A            1 MELYVNFELPP-EAEEELRKYFKIV--R-G-------G----DL-GNVEAALVSR---ITAEELAKMPRL--KFIQVVTA   59 (303)
T ss_dssp             CEEECCSCCCH-HHHHHHHTTCEEE--C-S-------S----CC-TTBCCCCBSC---CCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEccCCCH-HHHHHHHhcCCcc--c-h-------h----hh-CCCEEEEECC---CCHHHHhhCCCC--cEEEECCc
Confidence            47888777765 4578787764433  1 1       1    12 2588888764   346889999988  99999999


Q ss_pred             cccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016620           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (386)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~  175 (386)
                      |+|+||++++ ++||.|+|+||+++.+||||++++||++.|++..+++.+++|.|..+.    .+.++.|++|||||+|.
T Consensus        60 G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~----~~~~l~g~~vgIIG~G~  134 (303)
T 1qp8_A           60 GLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGE  134 (303)
T ss_dssp             CCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCST
T ss_pred             CcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCCCCCCEEEEEccCH
Confidence            9999999884 799999999999999999999999999999999999999999985321    23589999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhccc
Q 016620          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (386)
Q Consensus       176 IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~  255 (386)
                      ||+++|+++ ++|||+|++|||+...                .    ......++++++++||+|++|+|++++|+++|+
T Consensus       135 IG~~~A~~l-~~~G~~V~~~dr~~~~----------------~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~  193 (303)
T 1qp8_A          135 IGTRVGKIL-AALGAQVRGFSRTPKE----------------G----PWRFTNSLEEALREARAAVCALPLNKHTRGLVK  193 (303)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCC----------------S----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCccc----------------c----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhC
Confidence            999999997 7999999999987531                0    112346899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc-CCCCCC-CCCCCCCCCeEEcCCCCCC--cHHHHHH
Q 016620          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF-EDEPYM-KPGLSEMKNAIVVPHIASA--SKWTREG  331 (386)
Q Consensus       256 ~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~-~~EP~~-~~~L~~~~nvilTPHia~~--t~~~~~~  331 (386)
                      ++.|+.||+|++|||+|||+++|+++|.++|++|++.||++||| ++||++ ++|||++||+++|||++|+  |.+++++
T Consensus       194 ~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~  273 (303)
T 1qp8_A          194 YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQ  273 (303)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHH
T ss_pred             HHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999 889987 4699999999999999998  9999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCCCCCCcCC
Q 016620          332 MATLAALNVLGKIKGYPIWGNPNQVEPFL  360 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g~~~~~~v~~~~~~~  360 (386)
                      +.+.+++||.+|++|+++.|.||. +.|+
T Consensus       274 ~~~~~~~nl~~~~~g~~~~~~v~~-~~y~  301 (303)
T 1qp8_A          274 MVMEAVRNLITYATGGRPRNIAKR-EDYI  301 (303)
T ss_dssp             HHHHHHHHHHHHHTTSCCSCBCCG-GGTC
T ss_pred             HHHHHHHHHHHHHcCCCCCceeCH-HHcC
Confidence            999999999999999999999975 3454

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=7.7e-58  Score=452.25  Aligned_cols=283  Identities=26%  Similarity=0.352  Sum_probs=245.1

Q ss_pred             CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      +||||+++...+.  ..+.+++.+ ++.+..  +..++.+++    . ++|+++++..+++++++++ .+++  |+|++.
T Consensus         2 ~mmkIl~~~~~p~--~~~~~~~~~-~v~~~~--~~~~~~~~l----~-~ad~li~~~~~~v~~~ll~-~~~L--k~I~~~   68 (381)
T 3oet_A            2 NAMKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVEEL----N-HADALMVRSVTKVNESLLS-GTPI--NFVGTA   68 (381)
T ss_dssp             CCCEEEEETTSTT--HHHHHTTSS-EEEEEC--C---CHHHH----T-TCSEEEECTTSCBSHHHHT-TSCC--CEEEES
T ss_pred             CceEEEECCCCcH--HHHHHhhCC-cEEEeC--CCCCCHHHH----C-CCEEEEECCCCCCCHHHHc-CCCC--EEEEEc
Confidence            5689999988865  246666655 665543  223455553    3 6999999887889999998 4555  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEec
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~  173 (386)
                      |+|+|+||+++++++||.|+|+||+++.+||||+++++|++.|+.                     |.+++|+||||||+
T Consensus        69 ~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~---------------------g~~l~gktvGIIGl  127 (381)
T 3oet_A           69 TAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD---------------------GFSLRDRTIGIVGV  127 (381)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT---------------------TCCGGGCEEEEECC
T ss_pred             cccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc---------------------CCccCCCEEEEEeE
Confidence            999999999999999999999999999999999999999999852                     25799999999999


Q ss_pred             ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh----
Q 016620          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----  249 (386)
Q Consensus       174 G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~----  249 (386)
                      |.||+++|+++ ++|||+|++||++....               .    ......+++|++++||+|++|+|+|++    
T Consensus       128 G~IG~~vA~~l-~a~G~~V~~~d~~~~~~---------------~----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~  187 (381)
T 3oet_A          128 GNVGSRLQTRL-EALGIRTLLCDPPRAAR---------------G----DEGDFRTLDELVQEADVLTFHTPLYKDGPYK  187 (381)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECHHHHHT---------------T----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCChHHh---------------c----cCcccCCHHHHHhhCCEEEEcCcCCcccccc
Confidence            99999999997 79999999999854320               0    012357999999999999999999999    


Q ss_pred             hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHH
Q 016620          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTR  329 (386)
Q Consensus       250 t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~  329 (386)
                      |+++|+++.|++||+|++|||+|||++||++||+++|++|++.||+||||++||+++++||.++ +++|||+||+|.+++
T Consensus       188 T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~-~i~TPHiag~t~e~~  266 (381)
T 3oet_A          188 TLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAV-DIGTSHIAGYTLEGK  266 (381)
T ss_dssp             CTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHS-SEECSSCTTCCHHHH
T ss_pred             chhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCC-EEECCccCcCcHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887899874 899999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCCCC
Q 016620          330 EGMATLAALNVLGKIKGYPIWG  351 (386)
Q Consensus       330 ~~~~~~~~~ni~~~~~g~~~~~  351 (386)
                      .++...+++|+.+|+.|.+-..
T Consensus       267 ~~~~~~~~~~l~~~l~~~~~~~  288 (381)
T 3oet_A          267 ARGTTQVFEAYSAFIGREQRVA  288 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCcccc
Confidence            9999999999999998865433

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=9.3e-56  Score=424.56  Aligned_cols=250  Identities=26%  Similarity=0.365  Sum_probs=223.6

Q ss_pred             CCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHH
Q 016620           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (386)
Q Consensus        62 ~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~  141 (386)
                      ++|++++. ...+      ++|+|  |+|++.|+|+|+||++++++++|.++| ++.++.+||||++++||++.|++..+
T Consensus        34 ~ad~li~~-~~~~------~~~~L--k~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~  103 (290)
T 3gvx_A           34 DAEAQVIK-DRYV------LGKRT--KMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILEN  103 (290)
T ss_dssp             CCSEEEES-SCCC------CCSSC--CEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hhhhhhhh-hhhh------hhhhh--HHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhh
Confidence            59999984 3332      67877  999999999999999999988776666 47889999999999999999999999


Q ss_pred             HHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC
Q 016620          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (386)
Q Consensus       142 ~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (386)
                      ++.+++|.|... +    .++++|+||||||+|.||+++|++| ++|||+|++|||+.....                 .
T Consensus       104 ~~~~~~g~w~~~-~----~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~-----------------~  160 (290)
T 3gvx_A          104 NELMKAGIFRQS-P----TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVDQN-----------------V  160 (290)
T ss_dssp             HHHHHTTCCCCC-C----CCCCTTCEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSCCCTT-----------------C
T ss_pred             hhHhhhcccccC-C----ceeeecchheeeccCchhHHHHHHH-HhhCcEEEEEeccccccc-----------------c
Confidence            999999998532 1    2689999999999999999999997 799999999999764310                 0


Q ss_pred             ccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (386)
Q Consensus       222 ~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~  301 (386)
                        .....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|++.+|++|||++
T Consensus       161 --~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (290)
T 3gvx_A          161 --DVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWN  238 (290)
T ss_dssp             --SEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             --ccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccC
Confidence              123469999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCeEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCC
Q 016620          302 EPYMKPGLSEMKNAIVVPHIA-SASKWTREGMATLAALNVLGKIKGYP  348 (386)
Q Consensus       302 EP~~~~~L~~~~nvilTPHia-~~t~~~~~~~~~~~~~ni~~~~~g~~  348 (386)
                      ||+  +|||++|||++|||+| ++|.++++++.+.+++||.+|++|+.
T Consensus       239 EP~--~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~  284 (290)
T 3gvx_A          239 EPE--ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEG  284 (290)
T ss_dssp             TTS--CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC---
T ss_pred             Ccc--cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCC
Confidence            998  8999999999999999 89999999999999999999999974

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=5.3e-55  Score=432.86  Aligned_cols=283  Identities=25%  Similarity=0.337  Sum_probs=245.1

Q ss_pred             cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      |||+++..++.  ..+.+++.+ ++.+....  ..+.+++     .++|+++++..+++++++++ ++++  |+|++.|+
T Consensus         1 mkil~~~~~~~--~~~~~~~~~-~v~~~~~~--~~~~~~l-----~~ad~li~~~~~~~~~~~l~-~~~L--k~I~~~~~   67 (380)
T 2o4c_A            1 MRILADENIPV--VDAFFADQG-SIRRLPGR--AIDRAAL-----AEVDVLLVRSVTEVSRAALA-GSPV--RFVGTCTI   67 (380)
T ss_dssp             CEEEEETTCTT--HHHHHGGGS-EEEEECGG--GCSTTTT-----TTCSEEEECTTSCBCHHHHT-TSCC--CEEEECSS
T ss_pred             CEEEEecCchH--HHHHHHhCC-cEEEecCC--cCChHHH-----CCcEEEEEcCCCCCCHHHhc-CCCc--eEEEEcCc
Confidence            57888877764  246666554 55543322  2234443     36999999877789999998 8877  99999999


Q ss_pred             cccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016620           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (386)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~  175 (386)
                      |+|+||+++++++||.|+|+||+++.+||||+++++|++.|++                     |.+++|+||||||+|.
T Consensus        68 G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~---------------------~~~l~g~tvGIIGlG~  126 (380)
T 2o4c_A           68 GTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR---------------------GADLAERTYGVVGAGQ  126 (380)
T ss_dssp             CSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH---------------------TCCGGGCEEEEECCSH
T ss_pred             ccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh---------------------hcccCCCEEEEEeCCH
Confidence            9999999999999999999999999999999999999999952                     2479999999999999


Q ss_pred             hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh----hh
Q 016620          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (386)
Q Consensus       176 IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~----t~  251 (386)
                      ||+++|++| ++|||+|++||++....             ..+     . ...++++++++||+|++|+|++++    |+
T Consensus       127 IG~~vA~~l-~~~G~~V~~~d~~~~~~-------------~~g-----~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~  186 (380)
T 2o4c_A          127 VGGRLVEVL-RGLGWKVLVCDPPRQAR-------------EPD-----G-EFVSLERLLAEADVISLHTPLNRDGEHPTR  186 (380)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECHHHHHH-------------STT-----S-CCCCHHHHHHHCSEEEECCCCCSSSSSCCT
T ss_pred             HHHHHHHHH-HHCCCEEEEEcCChhhh-------------ccC-----c-ccCCHHHHHHhCCEEEEeccCccccccchh
Confidence            999999997 79999999999765321             001     1 246899999999999999999999    99


Q ss_pred             hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcHHHHHH
Q 016620          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASKWTREG  331 (386)
Q Consensus       252 ~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~~~~~~  331 (386)
                      ++|+++.|+.||+|++|||+|||+++|+++|+++|++|++.+|+||||++||.++++|+. +||++|||+||+|.++..+
T Consensus       187 ~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~-~nvi~TPHiag~t~e~~~~  265 (380)
T 2o4c_A          187 HLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAA-RCLIATPHIAGYSLEGKLR  265 (380)
T ss_dssp             TSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHT-TCSEECSSCTTCCHHHHHH
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhcc-CCEEEccccCcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988878887 5999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCC
Q 016620          332 MATLAALNVLGKIKGYPIWGNP  353 (386)
Q Consensus       332 ~~~~~~~ni~~~~~g~~~~~~v  353 (386)
                      +.+.+++|+.+|++|++..+--
T Consensus       266 ~~~~~~~nl~~~l~g~~~~~~~  287 (380)
T 2o4c_A          266 GTAQIYQAYCAWRGIAERVSLQ  287 (380)
T ss_dssp             HHHHHHHHHHHHHTCCCCCCGG
T ss_pred             HHHHHHHHHHHHHcCCCccchh
Confidence            9999999999999999876644

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=1.2e-35  Score=301.25  Aligned_cols=251  Identities=13%  Similarity=0.105  Sum_probs=206.3

Q ss_pred             CcEEE-EccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCC
Q 016620           87 GKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (386)
Q Consensus        87 ~k~i~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g  165 (386)
                      ++.|+ ..++|+|++  +++.++||.++|+++++. +|||       +++|++....+.+++| |.+     ..+.++.|
T Consensus       194 l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r-----~~~~~l~G  257 (479)
T 1v8b_A          194 IIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR-----ATDFLISG  257 (479)
T ss_dssp             CCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH-----HHCCCCTT
T ss_pred             eEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh-----ccccccCC
Confidence            47887 789999998  789999999999999999 9999       4568887777778777 632     34578999


Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||+|+|.||+.+|+++ ++|||+|++||++.....+..         ..+     + ...++++++++||+|++|+ 
T Consensus       258 ktVgIIG~G~IG~~vA~~l-~~~G~~Viv~d~~~~~~~~a~---------~~g-----~-~~~~l~ell~~aDiVi~~~-  320 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAV---------MEG-----F-NVVTLDEIVDKGDFFITCT-  320 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHH---------TTT-----C-EECCHHHHTTTCSEEEECC-
T ss_pred             CEEEEEeeCHHHHHHHHHH-HhCcCEEEEEeCChhhHHHHH---------HcC-----C-EecCHHHHHhcCCEEEECC-
Confidence            9999999999999999997 799999999999876532211         111     1 2468999999999999995 


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH--HHHcCCcceEEeeccCCCCCCCCCCCCC--CCeEEcCC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE--HLKQNPMFRVGLDVFEDEPYMKPGLSEM--KNAIVVPH  320 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~--aL~~g~i~gaalDV~~~EP~~~~~L~~~--~nvilTPH  320 (386)
                         .|.++|+++.|+.||+|++|||+|||++ ||+++|.+  +|++|+|. +++|||+.++  .++||.+  ||+++| |
T Consensus       321 ---~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~~~l~~l~~~nvv~t-H  393 (479)
T 1v8b_A          321 ---GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--GNKIIVLARGRLLNL-G  393 (479)
T ss_dssp             ---SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--SCEEEEEGGGSBHHH-H
T ss_pred             ---ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--CCeeeEecCCCEEEE-e
Confidence               7899999999999999999999999999 99999999  99999998 9999994322  4688888  999999 9


Q ss_pred             CC-CCcHH-HHHHHHHHHHHHHHHHHcCC--CCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCCCCC
Q 016620          321 IA-SASKW-TREGMATLAALNVLGKIKGY--PIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVS  384 (386)
Q Consensus       321 ia-~~t~~-~~~~~~~~~~~ni~~~~~g~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (386)
                      +| +++.+ ...++...+++|+..|++|+  ++.|.|+.+ |....    +.+++ +.| +.+|.-..
T Consensus       394 ~atghp~e~~~~s~a~~~~~ni~~~~~g~~~~l~n~V~~l-p~~~d----e~va~-l~L-~~lG~~l~  454 (479)
T 1v8b_A          394 CATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLL-PKHLD----EKVAL-YHL-KKLNASLT  454 (479)
T ss_dssp             SSCCSCHHHHHHHHHHHHHHHHHHHHTTTSSSCCSSEECC-CHHHH----HHHHH-HHH-GGGTCCCC
T ss_pred             ccCCCCchhHHHHHHHHHHHHHHHHHcCCCCcCCcceEeC-ChhhH----HHHHH-HHH-HHcCChHh
Confidence            99 66755 67788889999999999999  999999877 54422    34445 344 66665443

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=2.3e-36  Score=307.51  Aligned_cols=249  Identities=14%  Similarity=0.181  Sum_probs=198.4

Q ss_pred             CcEEE-EccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCC
Q 016620           87 GKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (386)
Q Consensus        87 ~k~i~-~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g  165 (386)
                      ++.|+ ..++|+|++  ++++++||.++|++++++ +|||+.       +|++....+.+.+| |.   .  ..+.++.|
T Consensus       214 l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~---~--~~g~~L~G  277 (494)
T 3d64_A          214 IKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IK---R--ATDVMIAG  277 (494)
T ss_dssp             CCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HH---H--HHCCCCTT
T ss_pred             cEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hh---h--ccccccCC
Confidence            37777 789999998  689999999999999999 999943       46665555555555 42   1  34578999


Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||+|+|.||+.+|+++ ++|||+|++||++.....+..         ..+     + ...++++++++||+|++|+ 
T Consensus       278 ktVgIIG~G~IG~~vA~~l-~~~G~~V~v~d~~~~~~~~a~---------~~G-----~-~~~~l~ell~~aDiVi~~~-  340 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSL-RGLGATVWVTEIDPICALQAA---------MEG-----Y-RVVTMEYAADKADIFVTAT-  340 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTTTCEEEEECSCHHHHHHHH---------TTT-----C-EECCHHHHTTTCSEEEECS-
T ss_pred             CEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCChHhHHHHH---------HcC-----C-EeCCHHHHHhcCCEEEECC-
Confidence            9999999999999999997 799999999999876532211         011     1 2358999999999999998 


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcceEEeeccCCCCCCC-CCCCCC--CCeEEcCCC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEM--KNAIVVPHI  321 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~--~nvilTPHi  321 (386)
                         +|+++|+++.|++||+|++|||+|||++ ||+++| ++|++|+|. +++|+|   |+++ +|||.+  |||++| |+
T Consensus       341 ---~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~---plp~~~pL~~l~~~nvv~t-H~  411 (494)
T 3d64_A          341 ---GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHI---IFPDGKRVILLAEGRLVNL-GC  411 (494)
T ss_dssp             ---SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEE---ECTTSCEEEEEGGGSBHHH-HT
T ss_pred             ---CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEE---ECCCCCchhhcCCCCEEEE-eC
Confidence               6899999999999999999999999999 699999 999999987 556655   6654 689988  999999 99


Q ss_pred             C-CCcHH-HHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCCCCCCCCCCCchhhhhhhhCCCCC
Q 016620          322 A-SASKW-TREGMATLAALNVLGKIKGYPIWGNPNQVEPFLNENAQPPAASPSIVNSKALGLPVS  384 (386)
Q Consensus       322 a-~~t~~-~~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (386)
                      | +++.+ ...++...+++|+..|++|+++.|.|+.+ |.-    ....+.+ +.| +.+|.-..
T Consensus       412 atg~~~~~~~~~~a~~~~~ni~~~~~g~~~~n~V~~l-p~~----~d~~va~-l~L-~~~g~~~~  469 (494)
T 3d64_A          412 ATGHPSFVMSNSFTNQTLAQIELFTRGGEYANKVYVL-PKH----LDEKVAR-LHL-ARIGAQLS  469 (494)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHGGGSCSSEEEC-CHH----HHHHHHH-HHH-TTTTCCCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeC-Chh----HHHHHHH-HHH-HHcCChHH
Confidence            9 66744 67889999999999999999999999776 431    2233444 344 55665443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.95  E-value=1e-27  Score=230.48  Aligned_cols=215  Identities=15%  Similarity=0.089  Sum_probs=164.3

Q ss_pred             CCcEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCC------CCHHHHHHHhcCCCcEEEec----------------C
Q 016620           14 GKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTI------LSVEDIIALIGDKCDGVIGQ----------------L   70 (386)
Q Consensus        14 ~~~~vlvt~~~~-~~~~~~~l~~~~~~~~~~~~~~~~------~~~~e~~~~~~~~ad~vi~~----------------~   70 (386)
                      +.|+|++..... ...+.+.|.+.++++.+....+..      ...+++.+.+. ++|+++.+                .
T Consensus         4 ~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~~~~~~~   82 (293)
T 3d4o_A            4 TGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWN-TVDAILLPISGTNEAGKVDTIFSNE   82 (293)
T ss_dssp             TTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGG-GCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred             cCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHh-cCCEEEeccccccCCceeecccccC
Confidence            446776654322 234678888889998765432211      11244444444 59999985                2


Q ss_pred             CccccHHHHHHhhccCCcEEEEccccccccCh-hHHhhCCcEEecCC------CCCchhHHHHHHHHHHHHHhchHHHHH
Q 016620           71 TEDWGETLFAALSRAGGKAFSNMAVGYNNVDV-NAANKYGIAVGNTP------GVLTETTAELAASLSLAAARRIVEADE  143 (386)
Q Consensus        71 ~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~-~~~~~~gI~v~n~~------~~~~~~vAE~al~~~L~~~R~~~~~~~  143 (386)
                      ..+++++++++++++  |+|.   +|+|++|+ ++++++||.|+|++      ++++.+|||++++++|..         
T Consensus        83 ~~~~~~~~l~~~~~l--~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~---------  148 (293)
T 3d4o_A           83 SIVLTEEMIEKTPNH--CVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH---------  148 (293)
T ss_dssp             CCBCCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH---------
T ss_pred             CccchHHHHHhCCCC--CEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh---------
Confidence            346889999999987  8987   79999998 89999999999998      889999999999988862         


Q ss_pred             HHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc
Q 016620          144 FMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT  223 (386)
Q Consensus       144 ~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (386)
                                     .+.++.|++|||||+|.||+.+|+++ ++||++|++|||+......         ....+   ..
T Consensus       149 ---------------~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~dr~~~~~~~---------~~~~g---~~  200 (293)
T 3d4o_A          149 ---------------TDFTIHGANVAVLGLGRVGMSVARKF-AALGAKVKVGARESDLLAR---------IAEMG---ME  200 (293)
T ss_dssp             ---------------CSSCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHHH---------HHHTT---SE
T ss_pred             ---------------cCCCCCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECCHHHHHH---------HHHCC---Ce
Confidence                           12579999999999999999999997 7999999999998754211         01111   11


Q ss_pred             ccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       224 ~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      .....++++++++||+|++|+|.     ++++++.++.||+|+++||++||+.
T Consensus       201 ~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          201 PFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             ecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            11235789999999999999995     7889999999999999999999764

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.91  E-value=2.5e-24  Score=207.46  Aligned_cols=221  Identities=14%  Similarity=0.095  Sum_probs=157.5

Q ss_pred             CCcEEEEeCCC-CchHHHHHHHhCCCeEEEecCCCCCC------CHHHHHHHhcCCCcEEEec---C-----------Cc
Q 016620           14 GKYRVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTIL------SVEDIIALIGDKCDGVIGQ---L-----------TE   72 (386)
Q Consensus        14 ~~~~vlvt~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~------~~~e~~~~~~~~ad~vi~~---~-----------~~   72 (386)
                      +.|||++...- ....+.+.|.+.++++.+....+...      ..+++.+.+. ++|+++.+   .           ..
T Consensus         6 ~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~s~~a~~   84 (300)
T 2rir_A            6 TGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQ-QIDSIILPVSATTGEGVVSTVFSNE   84 (300)
T ss_dssp             CSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGG-GCSEEECCSSCEETTTEECBSSCSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHh-cCCEEEeccccccCCcccccccccC
Confidence            45677776432 22346788888899987654332211      1122333344 59999872   1           24


Q ss_pred             c--ccHHHHHHhhccCCcEEEEccccccccC-hhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCc
Q 016620           73 D--WGETLFAALSRAGGKAFSNMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL  149 (386)
Q Consensus        73 ~--~~~~~l~~l~~l~~k~i~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~  149 (386)
                      +  ++++.++.++++  |+|.   +|+|++| +++++++||.|+|+|+++  ++         ++.|++..+     +|.
T Consensus        85 ~~~~~~~~l~~~~~l--~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~  143 (300)
T 2rir_A           85 EVVLKQDHLDRTPAH--CVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGT  143 (300)
T ss_dssp             CEECCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHH
T ss_pred             CccchHHHHhhcCCC--CEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHH
Confidence            5  789999999987  8887   8999999 999999999999999974  33         234555443     233


Q ss_pred             cCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 016620          150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (386)
Q Consensus       150 ~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (386)
                      |..  .....+.++.|++|||||+|.||+.+|+++ ++||++|++|||+......         +.+.+   .......+
T Consensus       144 ~~~--~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~d~~~~~~~~---------~~~~g---~~~~~~~~  208 (300)
T 2rir_A          144 IML--AIQHTDYTIHGSQVAVLGLGRTGMTIARTF-AALGANVKVGARSSAHLAR---------ITEMG---LVPFHTDE  208 (300)
T ss_dssp             HHH--HHHTCSSCSTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHHH---------HHHTT---CEEEEGGG
T ss_pred             HHH--HHHhcCCCCCCCEEEEEcccHHHHHHHHHH-HHCCCEEEEEECCHHHHHH---------HHHCC---CeEEchhh
Confidence            310  001235689999999999999999999997 7999999999998754211         01111   11112357


Q ss_pred             HHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       230 l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      +++++++||+|++|+|.     ++++++.++.||+|+++||++||+.
T Consensus       209 l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          209 LKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             HHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             HHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            89999999999999996     6889999999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.90  E-value=9.7e-25  Score=222.66  Aligned_cols=225  Identities=15%  Similarity=0.081  Sum_probs=175.3

Q ss_pred             EEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeE
Q 016620           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (386)
Q Consensus        89 ~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~v  168 (386)
                      ++...|+|+|++  .++.++||.++|+++++. +|||+.       +|++....+....+    |..  ..+..+.|++|
T Consensus       214 vveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g----~~r--~~~~~l~GktV  277 (494)
T 3ce6_A          214 VTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG----INR--GTDALIGGKKV  277 (494)
T ss_dssp             EEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH----HHH--HHCCCCTTCEE
T ss_pred             EEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH----HHh--ccCCCCCcCEE
Confidence            455889999998  678999999999999998 999953       34444333333332    311  12347899999


Q ss_pred             EEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCCh
Q 016620          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (386)
Q Consensus       169 gIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~  248 (386)
                      +|+|+|.||+.+|+++ +++|++|+++|+++......         ...+.      ...+++++++.+|+|+.|++   
T Consensus       278 ~IiG~G~IG~~~A~~l-ka~Ga~Viv~d~~~~~~~~A---------~~~Ga------~~~~l~e~l~~aDvVi~atg---  338 (494)
T 3ce6_A          278 LICGYGDVGKGCAEAM-KGQGARVSVTEIDPINALQA---------MMEGF------DVVTVEEAIGDADIVVTATG---  338 (494)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTTC------EECCHHHHGGGCSEEEECSS---
T ss_pred             EEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH---------HHcCC------EEecHHHHHhCCCEEEECCC---
Confidence            9999999999999997 79999999999987653211         11121      13578899999999999985   


Q ss_pred             hhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH-HHHcCCcceEEeeccCCCCCCCC-CCCCCCCeE----EcCCC
Q 016620          249 TTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE-HLKQNPMFRVGLDVFEDEPYMKP-GLSEMKNAI----VVPHI  321 (386)
Q Consensus       249 ~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~-aL~~g~i~gaalDV~~~EP~~~~-~L~~~~nvi----lTPHi  321 (386)
                       +.++++.+.|+.||+|++++|+||+.. +|+++|.+ +|+++++. +.+|+++.++...+ .|+..+|++    +|||+
T Consensus       339 -t~~~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~  416 (494)
T 3ce6_A          339 -NKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHP  416 (494)
T ss_dssp             -SSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSC
T ss_pred             -CHHHHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCc
Confidence             467888899999999999999999999 99999998 88888877 66799876442222 466778888    99999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 016620          322 ASASKWTREGMATLAALNVLGKIKGYPIWGNP  353 (386)
Q Consensus       322 a~~t~~~~~~~~~~~~~ni~~~~~g~~~~~~v  353 (386)
                      ++.+.++   +...+.++++.|.+|+++.+.|
T Consensus       417 a~~~~~s---~~~qa~~ai~~~~~g~~~~~~V  445 (494)
T 3ce6_A          417 SFVMSNS---FANQTIAQIELWTKNDEYDNEV  445 (494)
T ss_dssp             HHHHHHH---HHHHHHHHHHHHHTGGGCCSSE
T ss_pred             cccchHH---HHHHHHHHHHHHHcCCCCCCEE
Confidence            9877654   4677899999999999888776

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.89  E-value=1.1e-22  Score=202.02  Aligned_cols=290  Identities=16%  Similarity=0.132  Sum_probs=196.0

Q ss_pred             HHHHHHhCCCeEEEecCC--CCCCCHHHHH-----------HHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           29 WINLLIEQDCRVEICTQK--KTILSVEDII-----------ALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~--~~~~~~~e~~-----------~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      ..+.|.+.|+++.+-...  ...++.++..           +.+. ++|+|+ ...++.++++....+.  ..++.....
T Consensus        22 ~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~-~adii~-~vk~p~~~e~~~l~~~--~~l~~~~~~   97 (377)
T 2vhw_A           22 GVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWA-DADLLL-KVKEPIAAEYGRLRHG--QILFTFLHL   97 (377)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHH-HCSEEE-CSSCCCGGGGGGCCTT--CEEEECCCG
T ss_pred             HHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhc-cCCEEE-EeCCCChHHHhhcCCC--CEEEEEecc
Confidence            467787888888653322  1234555554           2222 478664 4455666665444443  366777677


Q ss_pred             cccccChhHHhhCCcEEe----------cCCCCCchhHHHHHHHHHHHHH-hchHHHHHHHHcCccCCCCCCcccccccC
Q 016620           96 GYNNVDVNAANKYGIAVG----------NTPGVLTETTAELAASLSLAAA-RRIVEADEFMRAGLYDGWLPNLFVGNLLK  164 (386)
Q Consensus        96 G~d~id~~~~~~~gI~v~----------n~~~~~~~~vAE~al~~~L~~~-R~~~~~~~~~~~~~~~~w~~~~~~g~~l~  164 (386)
                      ++|.-.++++.++||.+.          |.|.+  .++||++..+++.+. |++.    ....|.|. |...  . .++.
T Consensus        98 ~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~--s~~ae~ag~~a~~~a~r~l~----~~~~g~~~-~~~~--~-~~l~  167 (377)
T 2vhw_A           98 AASRACTDALLDSGTTSIAYETVQTADGALPLL--APMSEVAGRLAAQVGAYHLM----RTQGGRGV-LMGG--V-PGVE  167 (377)
T ss_dssp             GGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT--HHHHHHHHHHHHHHHHHHTS----GGGTSCCC-CTTC--B-TTBC
T ss_pred             cCCHHHHHHHHHcCCeEEEeeeccccCCCcccc--CchHHHHHHHHHHHHHHHHH----HhcCCCcc-cccC--C-CCCC
Confidence            888888999999999997          56665  456699985555444 6663    23345442 2221  1 3689


Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      |++|+|+|+|.||+.+|+.+ +++|++|+++|++..... . ...      ..+..- .......++++++.++|+|+.+
T Consensus       168 g~~V~ViG~G~iG~~~a~~a-~~~Ga~V~~~d~~~~~l~-~-~~~------~~g~~~~~~~~~~~~l~~~l~~aDvVi~~  238 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIA-NGMGATVTVLDINIDKLR-Q-LDA------EFCGRIHTRYSSAYELEGAVKRADLVIGA  238 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHH-H-HHH------HTTTSSEEEECCHHHHHHHHHHCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-H-HHH------hcCCeeEeccCCHHHHHHHHcCCCEEEEC
Confidence            99999999999999999996 799999999999875421 1 110      011110 0000123678889999999997


Q ss_pred             c--CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC-CCCC-CCCCCCCCCeE--E
Q 016620          244 P--VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED-EPYM-KPGLSEMKNAI--V  317 (386)
Q Consensus       244 l--Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~-EP~~-~~~L~~~~nvi--l  317 (386)
                      +  |.+ +|.++++++.++.||+|+++||+|..             .|.       ||+. ||.+ ++|++..+||+  +
T Consensus       239 ~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~-------------~Gg-------v~e~~ep~~~~~~~~~~~~v~i~~  297 (377)
T 2vhw_A          239 VLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAID-------------QGG-------CFEGSRPTTYDHPTFAVHDTLFYC  297 (377)
T ss_dssp             CCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGG-------------TTC-------SBTTCCCBCSSSCEEEETTEEEEC
T ss_pred             CCcCCC-CCcceecHHHHhcCCCCcEEEEEecC-------------CCC-------ccccccCCCCCCCEEEECCEEEEe
Confidence            6  554 78899999999999999999999831             121       6877 8874 46899999998  9


Q ss_pred             cCCCCCCcHHHH---------HHHHHHHHHHHH-HHHcCCCCCCCCCCCCcCCCC
Q 016620          318 VPHIASASKWTR---------EGMATLAALNVL-GKIKGYPIWGNPNQVEPFLNE  362 (386)
Q Consensus       318 TPHia~~t~~~~---------~~~~~~~~~ni~-~~~~g~~~~~~v~~~~~~~~~  362 (386)
                      |||+++.+..+.         ..+.+++.++.. .+.+++++.+.+|..++++..
T Consensus       298 ~phl~~~~~~~as~~~~~~~~~~~~~l~~~g~~~~~~~~~~l~~~v~~~~G~i~~  352 (377)
T 2vhw_A          298 VANMPASVPKTSTYALTNATMPYVLELADHGWRAACRSNPALAKGLSTHEGALLS  352 (377)
T ss_dssp             BTTGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHTTEEEETTEECC
T ss_pred             cCCcchhhHHHHHHHHHHHHHHHHHHHHhCChhhhhhcChHHhCcEEeeCCEEcC
Confidence            999999886521         233344445533 666788899999987788754

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.80  E-value=5.8e-19  Score=174.70  Aligned_cols=293  Identities=15%  Similarity=0.151  Sum_probs=183.7

Q ss_pred             HHHHHHHhCCCeEEEecCC--CCCCCHHHHHHH---------hcCCCcEEEecCCccccHHHHHHhhccCCcEEEEcccc
Q 016620           28 RWINLLIEQDCRVEICTQK--KTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (386)
Q Consensus        28 ~~~~~l~~~~~~~~~~~~~--~~~~~~~e~~~~---------~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G   96 (386)
                      +..+.|.+.|+++.+-...  ...++.++..+.         .. ++|+|+.. .+++.++ ++.+++ |.+++.....+
T Consensus        21 ~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~v-k~p~~~~-~~~l~~-~~~~~~~~~~~   96 (369)
T 2eez_A           21 GGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKV-KEPLPEE-YGFLRE-GLILFTYLHLA   96 (369)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECS-SCCCGGG-GGGCCT-TCEEEECCCGG
T ss_pred             HHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEE-CCCCHHH-HhhcCC-CcEEEEEeccc
Confidence            3467888889888653322  124566666541         22 58987743 4455444 555533 44889998999


Q ss_pred             ccccChhHHhhCCcEEe---cCCCC-Cc----hhHHHHHH--HHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCC
Q 016620           97 YNNVDVNAANKYGIAVG---NTPGV-LT----ETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ  166 (386)
Q Consensus        97 ~d~id~~~~~~~gI~v~---n~~~~-~~----~~vAE~al--~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~  166 (386)
                      .|..+++++.++||.+.   +.+.. ..    .++++.+-  +.+++ .+.+...    ..|. ..|...   ..++.++
T Consensus        97 ~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a-~~~l~~~----~~g~-~~~~~~---~~~l~~~  167 (369)
T 2eez_A           97 ADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVG-AQFLEKP----KGGR-GVLLGG---VPGVAPA  167 (369)
T ss_dssp             GCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHH-HHHTSGG----GTSC-CCCTTC---BTBBCCC
T ss_pred             CCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHH-HHHHHHh----cCCC-ceecCC---CCCCCCC
Confidence            99999999999999998   44432 11    44555444  33322 2222211    0121 012111   1368999


Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC-ccccccCCHHHHhhhCCEEEEccC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      +|+|+|.|.||+.+|+.+ +++|++|+++|++.... +...+       ..+..- .......++++++..+|+|+.|++
T Consensus       168 ~V~ViGaG~iG~~~a~~l-~~~Ga~V~~~d~~~~~~-~~~~~-------~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g  238 (369)
T 2eez_A          168 SVVILGGGTVGTNAAKIA-LGMGAQVTILDVNHKRL-QYLDD-------VFGGRVITLTATEANIKKSVQHADLLIGAVL  238 (369)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHH-------HTTTSEEEEECCHHHHHHHHHHCSEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHH-------hcCceEEEecCCHHHHHHHHhCCCEEEECCC
Confidence            999999999999999997 79999999999987542 11100       011110 000112457788899999999999


Q ss_pred             CCh-hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC-CCCCCCCCCeE-------
Q 016620          246 LDK-TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM-KPGLSEMKNAI-------  316 (386)
Q Consensus       246 lt~-~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~-~~~L~~~~nvi-------  316 (386)
                      ... .+..++.++.++.||+|+++||++-.             .|   |+ +|++  ||.+ ++|++..+|+.       
T Consensus       239 ~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~l  299 (369)
T 2eez_A          239 VPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANM  299 (369)
T ss_dssp             -------CCSCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCS
T ss_pred             CCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCc
Confidence            765 57788899999999999999999831             12   44 9998  6653 45788889999       


Q ss_pred             --EcCCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCcCCC
Q 016620          317 --VVPHIASA--SKWTREGMATLAALNVLGKIKGYPIWGNPNQVEPFLN  361 (386)
Q Consensus       317 --lTPHia~~--t~~~~~~~~~~~~~ni~~~~~g~~~~~~v~~~~~~~~  361 (386)
                        .|||+|+.  +......+.+++.+++..++.++++.+.+|..++++-
T Consensus       300 p~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~~~~~~G~~~  348 (369)
T 2eez_A          300 PGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDAALLKGLNTHKGRLT  348 (369)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCHHHHTTEEEETTEEC
T ss_pred             chhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcChHHhcCEEeeCCEEc
Confidence              88998884  4566788888888899888899889999986655553

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.79  E-value=1.1e-20  Score=189.27  Aligned_cols=154  Identities=19%  Similarity=0.232  Sum_probs=123.5

Q ss_pred             cc-cCCCeEEEEecChhHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          161 NL-LKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       161 ~~-l~g~~vgIvG~G~IG~~iA~~L~~~-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      .+ ++|+||||+|+|+||+.+|+++ ++ |||+|+++++.....       |             .....+++++++.+|
T Consensus       207 ~~~l~gktvgI~G~G~VG~~vA~~l-~~~~G~kVv~~sD~~g~~-------~-------------~~~gvdl~~L~~~~d  265 (419)
T 1gtm_A          207 WDTLKGKTIAIQGYGNAGYYLAKIM-SEDFGMKVVAVSDSKGGI-------Y-------------NPDGLNADEVLKWKN  265 (419)
T ss_dssp             CSCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEE-------E-------------EEEEECHHHHHHHHH
T ss_pred             CcccCCCEEEEEcCCHHHHHHHHHH-HHhcCCEEEEEeCCCccc-------c-------------CccCCCHHHHHHHHH
Confidence            56 9999999999999999999997 68 999999995432110       0             001136777776555


Q ss_pred             E-EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCC--CCCCCCCCe
Q 016620          239 V-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMK--PGLSEMKNA  315 (386)
Q Consensus       239 i-Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~--~~L~~~~nv  315 (386)
                      . .++ +|+ ++|++ |+.+.|..||. .+|||++||.+||+++ +++|+++.|.+++     +||++.  ++|++.+||
T Consensus       266 ~~~~l-~~l-~~t~~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V  335 (419)
T 1gtm_A          266 EHGSV-KDF-PGATN-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGI  335 (419)
T ss_dssp             HHSSS-TTC-TTSEE-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTC
T ss_pred             hcCEe-ecC-ccCee-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCE
Confidence            4 222 566 57888 89999999998 5999999999999999 6999999999988     899863  489999999


Q ss_pred             EEcCCC----C-----------------CCcHHHHHHHHHHHHHHHHHHHc
Q 016620          316 IVVPHI----A-----------------SASKWTREGMATLAALNVLGKIK  345 (386)
Q Consensus       316 ilTPHi----a-----------------~~t~~~~~~~~~~~~~ni~~~~~  345 (386)
                      ++|||+    |                 |.+.+..+++.+.+.+|+.++++
T Consensus       336 ~itPhiaaNaGGvt~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~~  386 (419)
T 1gtm_A          336 LQIPDFLCNAGGVTVSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVYN  386 (419)
T ss_dssp             EEECHHHHTTHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEECchhhhCCcceeeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999    5                 56677888899888899888873

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.76  E-value=3.5e-17  Score=163.45  Aligned_cols=236  Identities=19%  Similarity=0.219  Sum_probs=148.1

Q ss_pred             eCCCCCcEEEEeCCCCchH--HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-CCcEEEecCCccccHHHHHH-----
Q 016620           10 WNPNGKYRVVSTKPMPGTR--WINLLIEQDCRVEICTQKKTILSVEDIIALIGD-KCDGVIGQLTEDWGETLFAA-----   81 (386)
Q Consensus        10 ~~~~~~~~vlvt~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~ad~vi~~~~~~~~~~~l~~-----   81 (386)
                      .+|.+..||..+-.+..+.  .++-|.+.|.++..+..... .|.+++...+.. +.. ++.+..+. .++.+..     
T Consensus        38 ~~pl~g~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n~~-stqd~~aaal~~~gi~-v~a~~ge~-~~ey~~~~~~~l  114 (436)
T 3h9u_A           38 SKPLKGAKIAGCLHMTMQTAVLIETLVELGAEVRWASCNIF-STQDHAAAAIAKRGIP-VFAWKGET-EEEYMWCMKQTL  114 (436)
T ss_dssp             TCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTT-TCCHHHHHHHHHTTCC-EEECTTCC-HHHHHHHHHHTT
T ss_pred             cCCCCCCEEEEEeccHHHHHHHHHHHHHcCCEEEEecCCCC-CCcHHHHHHHHhcCCe-EEEeCCCC-HHHHHHHHHHHH
Confidence            4677788887766655432  45667777888765544332 245555544432 111 22222211 1222211     


Q ss_pred             --------------------------hhccCCc---EEEEccccccccC-hhHHhhCCcEEecCCCCCchhHHHHHHHHH
Q 016620           82 --------------------------LSRAGGK---AFSNMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLS  131 (386)
Q Consensus        82 --------------------------l~~l~~k---~i~~~~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~al~~~  131 (386)
                                                .+++--+   ..=-.++|+..+. .....+.+|+|.|++........+...+..
T Consensus       115 ~~~~~~~~p~~ilDdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~  194 (436)
T 3h9u_A          115 KGFSGDGYPNMLLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCR  194 (436)
T ss_dssp             SCBTTTBCCSEEEESSSHHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHH
T ss_pred             HhcccCCCCceEeccccHHHHHHHHHhHHHHhhccceeeccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccch
Confidence                                      1221101   1122334443332 223457889999998755555444333322


Q ss_pred             HHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh
Q 016620          132 LAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG  211 (386)
Q Consensus       132 L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~  211 (386)
                      -++.+.+      .+.           .+.++.|++|||+|+|.||+.+|++| ++||++|+++|+++.......     
T Consensus       195 ~slldgi------~ra-----------tg~~L~GktVgIiG~G~IG~~vA~~L-ka~Ga~Viv~D~~p~~a~~A~-----  251 (436)
T 3h9u_A          195 ESLVDGI------KRA-----------TDVMIAGKTACVCGYGDVGKGCAAAL-RGFGARVVVTEVDPINALQAA-----  251 (436)
T ss_dssp             HHHHHHH------HHH-----------HCCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHH-----
T ss_pred             HHHHHHH------HHh-----------cCCcccCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEECCChhhhHHHH-----
Confidence            2222211      111           23579999999999999999999997 799999999999875432211     


Q ss_pred             hhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHH
Q 016620          212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEH  285 (386)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~a  285 (386)
                          ..+     . ...+++|++++||+|+++    +.|.++|+++.|++||+|+++||+|||.+ ||.++|.+.
T Consensus       252 ----~~G-----~-~~~sL~eal~~ADVVilt----~gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          252 ----MEG-----Y-QVLLVEDVVEEAHIFVTT----TGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             ----HTT-----C-EECCHHHHTTTCSEEEEC----SSCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHH
T ss_pred             ----HhC-----C-eecCHHHHHhhCCEEEEC----CCCcCccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhh
Confidence                111     1 246899999999999963    46899999999999999999999999997 999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.70  E-value=9.6e-17  Score=160.47  Aligned_cols=229  Identities=14%  Similarity=0.159  Sum_probs=150.0

Q ss_pred             HHHHHHhCCCeEEEecCCC--CCCCHHHHHHH---------hcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccccc
Q 016620           29 WINLLIEQDCRVEICTQKK--TILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (386)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~--~~~~~~e~~~~---------~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~   97 (386)
                      ..+.|.+.|+++.+.....  ..++.++..+.         +. ++|+++.. .++ ..+.++.++. ++++|...+.|+
T Consensus        29 ~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~-~adiil~v-k~p-~~~~i~~l~~-~~~li~~~~~~~  104 (401)
T 1x13_A           29 TVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVW-QSEIILKV-NAP-LDDEIALLNP-GTTLVSFIWPAQ  104 (401)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGG-SSSEEECS-SCC-CHHHHTTCCT-TCEEEECCCGGG
T ss_pred             HHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHh-cCCeEEEe-CCC-CHHHHHHhcC-CCcEEEEecCCC
Confidence            4677888898886643321  23466666543         32 38887754 333 3566677632 349999999999


Q ss_pred             cccChhHHhhCCcEEecCCCCCchhHHHHHHHHH---HHHHhchHHHHHHHHcCcc--CCCCCCcc--cccccCCCeEEE
Q 016620           98 NNVDVNAANKYGIAVGNTPGVLTETTAELAASLS---LAAARRIVEADEFMRAGLY--DGWLPNLF--VGNLLKGQTVGV  170 (386)
Q Consensus        98 d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~---L~~~R~~~~~~~~~~~~~~--~~w~~~~~--~g~~l~g~~vgI  170 (386)
                      |+.|++++.++||.+.+     .+.|+|++.++.   ++..+.+.. ...++.+.|  ..|.....  .| ++.|++|+|
T Consensus       105 d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag-~~av~~~~~~~~~~~~~~~~~~g-~l~g~~V~V  177 (401)
T 1x13_A          105 NPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAG-YRAIVEAAHEFGRFFTGQITAAG-KVPPAKVMV  177 (401)
T ss_dssp             CHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHH-HHHHHHHHHHCSSCSSCEEETTE-EECCCEEEE
T ss_pred             CHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHH-HHHHHHHHHhcccccCCceeecc-CcCCCEEEE
Confidence            99999999999999964     455565555443   333332222 223333322  22221100  11 578999999


Q ss_pred             EecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc------------cc---c-------cC
Q 016620          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT------------WK---R-------AS  228 (386)
Q Consensus       171 vG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~---~-------~~  228 (386)
                      +|+|.||..+++.+ +++|++|+++|++......  ...       .+.....            ..   .       ..
T Consensus       178 iGaG~iG~~aa~~a-~~~Ga~V~v~D~~~~~~~~--~~~-------lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  247 (401)
T 1x13_A          178 IGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVKEQ--VQS-------MGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEME  247 (401)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSCGGGHHH--HHH-------TTCEECCC--------CCHHHHHHSHHHHHHHHH
T ss_pred             ECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHH--HHH-------cCCEEEEecccccccccccchhhccHHHHHHHHH
Confidence            99999999999996 7999999999998754211  111       1110000            00   0       01


Q ss_pred             CHHHHhhhCCEEEEc--cCCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccCH
Q 016620          229 SMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (386)
Q Consensus       229 ~l~ell~~aDiVvl~--lPlt~~t~~li~~~~~~~mk~gailIN~a--Rg~~vde  279 (386)
                      ++++++..+|+|+.|  +|.. .+..+++++.++.||+|+++||+|  ||+.+++
T Consensus       248 ~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          248 LFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            377888999999999  5542 366889999999999999999999  8887764

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.69  E-value=1.6e-16  Score=158.58  Aligned_cols=141  Identities=16%  Similarity=0.216  Sum_probs=105.8

Q ss_pred             hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (386)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~  186 (386)
                      ...+++.|+..    ++..+-+-....+.+.+.....  +           ..+.++.|++|||+|+|.||+.+|+++ +
T Consensus       206 ~L~~PvinVnd----s~tK~~fDn~yG~~eslvdgI~--R-----------atg~~L~GKTVgVIG~G~IGr~vA~~l-r  267 (464)
T 3n58_A          206 LLPFPAINVND----SVTKSKFDNKYGCKESLVDGIR--R-----------GTDVMMAGKVAVVCGYGDVGKGSAQSL-A  267 (464)
T ss_dssp             CCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHHH--H-----------HHCCCCTTCEEEEECCSHHHHHHHHHH-H
T ss_pred             CCCCCEEeecc----HhhhhhhhhhhcchHHHHHHHH--H-----------hcCCcccCCEEEEECcCHHHHHHHHHH-H
Confidence            45688888765    4444544444444443332221  1           123679999999999999999999997 7


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCc
Q 016620          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (386)
Q Consensus       187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~ga  266 (386)
                      +|||+|+++|+++........         .+     + ...++++++++||+|+++.    .|.++|+++.|++||+|+
T Consensus       268 afGa~Viv~d~dp~~a~~A~~---------~G-----~-~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GA  328 (464)
T 3n58_A          268 GAGARVKVTEVDPICALQAAM---------DG-----F-EVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMC  328 (464)
T ss_dssp             HTTCEEEEECSSHHHHHHHHH---------TT-----C-EECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTE
T ss_pred             HCCCEEEEEeCCcchhhHHHh---------cC-----c-eeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCe
Confidence            999999999987654322211         11     1 2468999999999999875    478999999999999999


Q ss_pred             EEEEcCCCcc-cCHHHHHH
Q 016620          267 ILVNCSRGPV-IDEVALVE  284 (386)
Q Consensus       267 ilIN~aRg~~-vde~aL~~  284 (386)
                      +|||+|||.+ +|.++|.+
T Consensus       329 ILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          329 IVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             EEEECSSSTTTBTCGGGTT
T ss_pred             EEEEcCCCCcccCHHHHHh
Confidence            9999999998 99988874

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.65  E-value=4e-15  Score=148.27  Aligned_cols=103  Identities=21%  Similarity=0.401  Sum_probs=86.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ..+.|++|+|+|+|.||+.+|+++ ++||++|+++|+++........         .+     + ...++++++++||+|
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~L-ra~Ga~Viv~D~dp~ra~~A~~---------~G-----~-~v~~Leeal~~ADIV  279 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAAL-KAMGSIVYVTEIDPICALQACM---------DG-----F-RLVKLNEVIRQVDIV  279 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHH---------TT-----C-EECCHHHHTTTCSEE
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEeCChhhhHHHHH---------cC-----C-EeccHHHHHhcCCEE
Confidence            579999999999999999999997 7999999999988754322211         11     1 246899999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~  283 (386)
                      ++|    +.|.++|+++.|+.||+|+++||+|||++ +|.++|.
T Consensus       280 i~a----tgt~~lI~~e~l~~MK~gailINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          280 ITC----TGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             EEC----SSCSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGC
T ss_pred             EEC----CCCcccCCHHHHHhcCCCcEEEEecCCCccCCHHHHH
Confidence            995    36889999999999999999999999998 8877764

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.65  E-value=1.3e-15  Score=151.49  Aligned_cols=239  Identities=15%  Similarity=0.166  Sum_probs=145.6

Q ss_pred             HHHHHHhCCCeEEEecCCC--CCCCHHHHH-----------HHhcCCCcEEEecCCccc----cHHHHHHhhccCCcEEE
Q 016620           29 WINLLIEQDCRVEICTQKK--TILSVEDII-----------ALIGDKCDGVIGQLTEDW----GETLFAALSRAGGKAFS   91 (386)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~--~~~~~~e~~-----------~~~~~~ad~vi~~~~~~~----~~~~l~~l~~l~~k~i~   91 (386)
                      ..+.|.+.|+++.+.....  ..++.++..           +.+. ++|+++.. .+++    +++.++.++. +.+++.
T Consensus        22 ~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~-~adiil~v-~~p~~~~~~~~~i~~l~~-~~~~i~   98 (384)
T 1l7d_A           22 VVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALS-QADVVWKV-QRPMTAEEGTDEVALIKE-GAVLMC   98 (384)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHS-SCSEEEEE-ECCCCGGGSCCGGGGSCT-TCEEEE
T ss_pred             HHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhc-CCCEEEEe-cCcccccCCHHHHHhhcc-CCEEEE
Confidence            4677888888886633221  234555554           3344 58988765 3344    5677777764 348898


Q ss_pred             EccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCcc--CCCCCCcccc-cccCCCeE
Q 016620           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--DGWLPNLFVG-NLLKGQTV  168 (386)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~--~~w~~~~~~g-~~l~g~~v  168 (386)
                      ....+.|+.+++++.++||.+++. ....+.+++..+. +|+..+.+ .....+..+.|  ..|.+....+ .++.|++|
T Consensus        99 ~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V  175 (384)
T 1l7d_A           99 HLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPARV  175 (384)
T ss_dssp             ECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCCEE
T ss_pred             EecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCCCCCEE
Confidence            999999999999999999999974 2222212222222 22233322 12222333333  1122211111 36899999


Q ss_pred             EEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hc----CCCCcccccc----------CCHH
Q 016620          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---AN----GEQPVTWKRA----------SSMD  231 (386)
Q Consensus       169 gIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~----------~~l~  231 (386)
                      +|+|+|.||+.+++.+ +++|++|+++|++......  ...++....   ..    .....++...          ..++
T Consensus       176 ~ViGaG~iG~~aa~~a-~~~Ga~V~~~d~~~~~~~~--~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~  252 (384)
T 1l7d_A          176 LVFGVGVAGLQAIATA-KRLGAVVMATDVRAATKEQ--VESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVL  252 (384)
T ss_dssp             EEECCSHHHHHHHHHH-HHTTCEEEEECSCSTTHHH--HHHTTCEECCC-----------------------CCHHHHHH
T ss_pred             EEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHH
Confidence            9999999999999996 7999999999988653211  111110000   00    0000000000          1177


Q ss_pred             HHhhhCCEEEEcc--CCChhhhhcccHHHHhcCCCCcEEEEcC--CCccc
Q 016620          232 EVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  277 (386)
Q Consensus       232 ell~~aDiVvl~l--Plt~~t~~li~~~~~~~mk~gailIN~a--Rg~~v  277 (386)
                      +++..+|+|+.|+  |.+ .+..+++++.++.||+|+++||++  ||+.+
T Consensus       253 ~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~  301 (384)
T 1l7d_A          253 KELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNC  301 (384)
T ss_dssp             HHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             HHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence            8889999999888  443 245788999999999999999999  76643

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.61  E-value=1.6e-17  Score=166.29  Aligned_cols=218  Identities=14%  Similarity=0.192  Sum_probs=155.7

Q ss_pred             cEEEEccccccccChhHHh-----hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccC-CCCCCcccc-
Q 016620           88 KAFSNMAVGYNNVDVNAAN-----KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVG-  160 (386)
Q Consensus        88 k~i~~~~~G~d~id~~~~~-----~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~-~w~~~~~~g-  160 (386)
                      +.+...|+|+|++++.+..     ++++.+++.+|. ..+++++.+..++.+.|++....... .+.|. .|......+ 
T Consensus        83 ~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~~  160 (404)
T 1gpj_A           83 RHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVELAER  160 (404)
T ss_dssp             HHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHHHHH
T ss_pred             hhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHHHHH
Confidence            7788889999999999887     889999999887 46899999999999999876543221 22221 000000001 


Q ss_pred             --cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          161 --NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       161 --~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                        .++.|++|+|+|+|.||+.+++.+ +.+|+ +|+++||+.... ++....       .+..   .....++.+++..+
T Consensus       161 ~~~~l~g~~VlIiGaG~iG~~~a~~l-~~~G~~~V~v~~r~~~ra-~~la~~-------~g~~---~~~~~~l~~~l~~a  228 (404)
T 1gpj_A          161 ELGSLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARD-------LGGE---AVRFDELVDHLARS  228 (404)
T ss_dssp             HHSCCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHH-------HTCE---ECCGGGHHHHHHTC
T ss_pred             HhccccCCEEEEEChHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHH-------cCCc---eecHHhHHHHhcCC
Confidence              147999999999999999999997 68999 999999987542 111111       1111   11224688889999


Q ss_pred             CEEEEccCCChhhhhcccHHHHhc--CC----CCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCC-CCCCCC
Q 016620          238 DVISLHPVLDKTTYHLINKERLAT--MK----KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPY-MKPGLS  310 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~--mk----~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~-~~~~L~  310 (386)
                      |+|+.|+|.   +..+++.+.++.  ||    ++.++||++                             +|. .+++++
T Consensus       229 DvVi~at~~---~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~  276 (404)
T 1gpj_A          229 DVVVSATAA---PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVE  276 (404)
T ss_dssp             SEEEECCSS---SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGG
T ss_pred             CEEEEccCC---CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCcccc
Confidence            999999874   456777777776  42    456777765                             355 357899


Q ss_pred             CCCCeEE--cCCCCCCcHHHHH----------HHHHHHHHHHHHHHcCCCCCC
Q 016620          311 EMKNAIV--VPHIASASKWTRE----------GMATLAALNVLGKIKGYPIWG  351 (386)
Q Consensus       311 ~~~nvil--TPHia~~t~~~~~----------~~~~~~~~ni~~~~~g~~~~~  351 (386)
                      ++|||++  |||+++.+.++.+          .+....++++..|+.+.+..+
T Consensus       277 ~l~~v~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~~~~  329 (404)
T 1gpj_A          277 NIEDVEVRTIDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLKERR  329 (404)
T ss_dssp             GSTTEEEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH
Confidence            9999999  9999987776544          566667788888887755433

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.27  E-value=8.5e-12  Score=120.17  Aligned_cols=117  Identities=13%  Similarity=0.063  Sum_probs=91.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      +...-++|||||+|.||..+|+.| ...|.+|++||++......         +...+     .....++++++++||+|
T Consensus        17 ~~~~m~~I~iIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~~---------l~~~g-----~~~~~~~~~~~~~aDvv   81 (310)
T 3doj_A           17 RGSHMMEVGFLGLGIMGKAMSMNL-LKNGFKVTVWNRTLSKCDE---------LVEHG-----ASVCESPAEVIKKCKYT   81 (310)
T ss_dssp             -CCCSCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGGHH---------HHHTT-----CEECSSHHHHHHHCSEE
T ss_pred             ccccCCEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH---------HHHCC-----CeEcCCHHHHHHhCCEE
Confidence            455668999999999999999998 4789999999998764221         11112     23357899999999999


Q ss_pred             EEccCCChhhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          241 SLHPVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       241 vl~lPlt~~t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++|+|....+..++  .++.+..+++|.++||+++......+.+.+.+.+..+.
T Consensus        82 i~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           82 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             EECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            99999766666665  24566789999999999999998889999988875443

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.26  E-value=1.3e-11  Score=118.66  Aligned_cols=113  Identities=19%  Similarity=0.220  Sum_probs=92.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++||+||+|.||..+|++|. .-|.+|++|||++....+         +...+     .....++.|+++.||+|++|+|
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~-~~G~~v~v~dr~~~~~~~---------l~~~G-----a~~a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLL-KAGYLLNVFDLVQSAVDG---------LVAAG-----ASAARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSSHHHHHH---------HHHTT-----CEECSSHHHHHTTCSEEEECCS
T ss_pred             CEEEEeeehHHHHHHHHHHH-hCCCeEEEEcCCHHHHHH---------HHHcC-----CEEcCCHHHHHhcCCceeecCC
Confidence            58999999999999999984 679999999998765321         11222     3346799999999999999999


Q ss_pred             CChhhhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 016620          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (386)
Q Consensus       246 lt~~t~~li~~--~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g  293 (386)
                      ..++.+.++..  ..++.+++|.++||+|....-+...+.+.+++..+..
T Consensus        69 ~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~  118 (300)
T 3obb_A           69 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAM  118 (300)
T ss_dssp             CHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred             chHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence            98888877643  3788899999999999999999999999999875443

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.26  E-value=1.7e-10  Score=113.84  Aligned_cols=250  Identities=13%  Similarity=0.140  Sum_probs=135.1

Q ss_pred             eeCCCCCcEEEEeCCC-Cc-------hHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHHhc-----CCCcEEEecCCcc
Q 016620            9 VWNPNGKYRVVSTKPM-PG-------TRWINLLIEQDCRVEICTQKK--TILSVEDIIALIG-----DKCDGVIGQLTED   73 (386)
Q Consensus         9 ~~~~~~~~~vlvt~~~-~~-------~~~~~~l~~~~~~~~~~~~~~--~~~~~~e~~~~~~-----~~ad~vi~~~~~~   73 (386)
                      -..|-++|+|-+-+.. +.       .+..+.|.+.|+++.+-....  ..++.++..+.=.     +.+|.|+. ..++
T Consensus        16 ~~~~~~~m~IgvpkE~~~~E~RValtP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlk-Vk~p   94 (381)
T 3p2y_A           16 TQGPGSMTLIGVPRESAEGERRVALVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVK-VNPP   94 (381)
T ss_dssp             ----CTTCEEEECCCCSTTCCCCSSCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEEC-SSCC
T ss_pred             ccCCCcceEEEEEecCCCCCceecCCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEE-eCCC
Confidence            3456777777653221 11       234677888899887644432  3456666653211     12465543 3333


Q ss_pred             ccHHHHHHhhccCCcEEEEc-cccccccChhHHhhCCcEEec---CCCCC-c------hhHHHHHHHHHHHHHhchHHHH
Q 016620           74 WGETLFAALSRAGGKAFSNM-AVGYNNVDVNAANKYGIAVGN---TPGVL-T------ETTAELAASLSLAAARRIVEAD  142 (386)
Q Consensus        74 ~~~~~l~~l~~l~~k~i~~~-~~G~d~id~~~~~~~gI~v~n---~~~~~-~------~~vAE~al~~~L~~~R~~~~~~  142 (386)
                       +++.++.++. | +.+..+ --..|.=-++++.++||...-   .+... +      .++||.+=.+.      ...+.
T Consensus        95 -~~~e~~~l~~-g-~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~A------v~~aa  165 (381)
T 3p2y_A           95 -TSDEISQLKP-G-SVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKA------VLLGA  165 (381)
T ss_dssp             -CHHHHTTSCT-T-CEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHH------HHHHH
T ss_pred             -ChhHHhhccC-C-CEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHH------HHHHH
Confidence             3455566665 3 344333 333333335677899988854   33211 1      22333322111      11100


Q ss_pred             HHHHcCccCCCCCCcccc-cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-----
Q 016620          143 EFMRAGLYDGWLPNLFVG-NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-----  216 (386)
Q Consensus       143 ~~~~~~~~~~w~~~~~~g-~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-----  216 (386)
                      +  .-+   ..++....+ ..+.+++|+|+|+|.||..+|+.+ +++|++|+++|++......  ...++.....     
T Consensus       166 ~--~l~---~~~~~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l~~--~~~lGa~~~~l~~~~  237 (381)
T 3p2y_A          166 S--LST---RFVPMLTTAAGTVKPASALVLGVGVAGLQALATA-KRLGAKTTGYDVRPEVAEQ--VRSVGAQWLDLGIDA  237 (381)
T ss_dssp             H--HCS---SCSSCEECSSCEECCCEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSGGGHHH--HHHTTCEECCCC---
T ss_pred             H--Hhh---hhhhhhhcccCCcCCCEEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--HHHcCCeEEeccccc
Confidence            0  001   111111111 247899999999999999999996 7999999999998754211  1111000000     


Q ss_pred             cCCCCc--------cccccCCHHHHhhhCCEEEEcc--CCChhhhhcccHHHHhcCCCCcEEEEcC--CCccc
Q 016620          217 NGEQPV--------TWKRASSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVI  277 (386)
Q Consensus       217 ~~~~~~--------~~~~~~~l~ell~~aDiVvl~l--Plt~~t~~li~~~~~~~mk~gailIN~a--Rg~~v  277 (386)
                      .+....        ......++++.++++|+|+.++  |. ..+..+++++.++.||+|+++||+|  +|+.+
T Consensus       238 ~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          238 AGEGGYARELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             ----------CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             cccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence            000000        0001236788999999999885  54 2356789999999999999999997  45443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.25  E-value=2e-11  Score=117.40  Aligned_cols=117  Identities=15%  Similarity=0.140  Sum_probs=92.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+...++|||||+|.||+.+|+.| ...|.+|++||++......         +...+     .....++++++++||+|
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~~---------~~~~g-----~~~~~~~~e~~~~aDvV   69 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVL-LKQGKRVAIWNRSPGKAAA---------LVAAG-----AHLCESVKAALSASPAT   69 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHHHH---------HHHHT-----CEECSSHHHHHHHSSEE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---------HHHCC-----CeecCCHHHHHhcCCEE
Confidence            356778999999999999999998 4789999999998764321         11112     22357899999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++|+|....+..++.++.+..+++|.++||++++.......+.+.+++..+.
T Consensus        70 i~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           70 IFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             EECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             EEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            9999987667777753345667899999999999999999999999875443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.24  E-value=1.6e-11  Score=117.75  Aligned_cols=120  Identities=13%  Similarity=0.181  Sum_probs=92.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||..+|++|+ .-|.+|++|||++....+         +..     .+.....++.|+++.||+|++|+|
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~-~~G~~V~v~dr~~~~~~~---------l~~-----~G~~~~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILL-EAGYELVVWNRTASKAEP---------LTK-----LGATVVENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEC-------CT---------TTT-----TTCEECSSGGGGCCTTCEEEECCS
T ss_pred             CcEEEEecHHHHHHHHHHHH-HCCCeEEEEeCCHHHHHH---------HHH-----cCCeEeCCHHHHHhcCCceeeecc
Confidence            57999999999999999985 679999999998754211         111     223456789999999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      ..+....++..+.+..++++.++||++....-....+.+.+++..+...-.=|..
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsG  125 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFA  125 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEEC
T ss_pred             chhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCC
Confidence            8888888888889999999999999999999999999999998765544333443

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.23  E-value=6.1e-11  Score=114.34  Aligned_cols=130  Identities=15%  Similarity=0.079  Sum_probs=84.9

Q ss_pred             HHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh-hhHHHHHHhhhhhhhhhcCCC
Q 016620          143 EFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQ  220 (386)
Q Consensus       143 ~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~  220 (386)
                      ...+.+.|.+|.+...+ .....++|||||+|.||..+|+.|+ ..|. +|++||++. ....+.        +...+  
T Consensus         3 ~~~~~~~~~~~~~~~~~-~~~~~~~I~iIG~G~mG~~~A~~L~-~~G~~~V~~~dr~~~~~~~~~--------~~~~g--   70 (312)
T 3qsg_A            3 HHHHHSSGVDLGTENLY-FQSNAMKLGFIGFGEAASAIASGLR-QAGAIDMAAYDAASAESWRPR--------AEELG--   70 (312)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHHH-HHSCCEEEEECSSCHHHHHHH--------HHHTT--
T ss_pred             cccccccccccCccccc-ccCCCCEEEEECccHHHHHHHHHHH-HCCCCeEEEEcCCCCHHHHHH--------HHHCC--
Confidence            44566777555433222 2345679999999999999999984 6688 999999973 222221        11112  


Q ss_pred             CccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          221 PVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       221 ~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                         .....++++++++||+|++|+|...... .+ .+....++++.++||+++.......++.+.+.+.
T Consensus        71 ---~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           71 ---VSCKASVAEVAGECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH  134 (312)
T ss_dssp             ---CEECSCHHHHHHHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ---CEEeCCHHHHHhcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence               2235689999999999999999765544 33 6677889999999999999999999999988765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.22  E-value=1.1e-10  Score=112.89  Aligned_cols=154  Identities=16%  Similarity=0.105  Sum_probs=100.7

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhhCC
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREAD  238 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aD  238 (386)
                      .+..++|||||+|.||+++|+.| +..|.  +|++||++......         ....+..   .....++++ ++++||
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l-~~~G~~~~V~~~dr~~~~~~~---------a~~~G~~---~~~~~~~~~~~~~~aD   96 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISK---------AVDLGII---DEGTTSIAKVEDFSPD   96 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHH---------HHHTTSC---SEEESCTTGGGGGCCS
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCCCEEEEEECCHHHHHH---------HHHCCCc---chhcCCHHHHhhccCC
Confidence            34558999999999999999998 57788  99999998754221         1111211   112357788 899999


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC---CC-CCCCCCCCCC
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---PY-MKPGLSEMKN  314 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~E---P~-~~~~L~~~~n  314 (386)
                      +|++|+|.. .+..++ ++....+++++++++++.......+++.+.+.. ++.+. -=++..|   |. ....|++...
T Consensus        97 vVilavp~~-~~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~-~~v~~-hPm~G~e~sG~~~A~~~Lf~g~~  172 (314)
T 3ggo_A           97 FVMLSSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK-RFVGG-HPIAGTEKSGVEYSLDNLYEGKK  172 (314)
T ss_dssp             EEEECSCGG-GHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG-GEECE-EECCCCCCCSGGGCCTTTTTTCE
T ss_pred             EEEEeCCHH-HHHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC-CEEec-CcccCCcccchhhhhhhhhcCCE
Confidence            999999964 344444 567778999999999988765445666666643 21111 1122222   11 1135778888


Q ss_pred             eEEcCCCCCCcHHHHHHHH
Q 016620          315 AIVVPHIASASKWTREGMA  333 (386)
Q Consensus       315 vilTPHia~~t~~~~~~~~  333 (386)
                      +++||+- +.+.+..+.+.
T Consensus       173 ~il~~~~-~~~~~~~~~v~  190 (314)
T 3ggo_A          173 VILTPTK-KTDKKRLKLVK  190 (314)
T ss_dssp             EEECCCT-TSCHHHHHHHH
T ss_pred             EEEEeCC-CCCHHHHHHHH
Confidence            9999983 34455444443

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.22  E-value=3.6e-11  Score=116.35  Aligned_cols=118  Identities=14%  Similarity=0.114  Sum_probs=93.2

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ....++|||||+|.||+.+|+.| ...|.+|++||+++.....         +...+     .....++++++++||+|+
T Consensus        28 ~~~~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~~---------l~~~g-----~~~~~~~~e~~~~aDvVi   92 (320)
T 4dll_A           28 DPYARKITFLGTGSMGLPMARRL-CEAGYALQVWNRTPARAAS---------LAALG-----ATIHEQARAAARDADIVV   92 (320)
T ss_dssp             -CCCSEEEEECCTTTHHHHHHHH-HHTTCEEEEECSCHHHHHH---------HHTTT-----CEEESSHHHHHTTCSEEE
T ss_pred             ccCCCEEEEECccHHHHHHHHHH-HhCCCeEEEEcCCHHHHHH---------HHHCC-----CEeeCCHHHHHhcCCEEE
Confidence            34667999999999999999998 4789999999998764221         11111     234578999999999999


Q ss_pred             EccCCChhhhhcccH-HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016620          242 LHPVLDKTTYHLINK-ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (386)
Q Consensus       242 l~lPlt~~t~~li~~-~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga  294 (386)
                      +|+|.......++.. +.+..+++|.++||++++.+...+.+.+.+++..+...
T Consensus        93 ~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~  146 (320)
T 4dll_A           93 SMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHL  146 (320)
T ss_dssp             ECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             EECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEE
Confidence            999976666766643 56778999999999999999999999999987655443

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.20  E-value=2.9e-10  Score=111.35  Aligned_cols=108  Identities=23%  Similarity=0.304  Sum_probs=86.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (386)
                      ++.|+||+|+|+|+||+.+|+++ ++||++|+++|++...  .++.+.+       +     . ...+.+++++ .||++
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l-~~~GakVvvsD~~~~~--~~~a~~~-------g-----a-~~v~~~ell~~~~DIl  235 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTER--VAHAVAL-------G-----H-TAVALEDVLSTPCDVF  235 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH--HHHHHHT-------T-----C-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEeCCccH--HHHHHhc-------C-----C-EEeChHHhhcCcccee
Confidence            69999999999999999999997 7999999999987543  2221111       1     1 1246678887 99999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      +-|     .+.++|+++.++.|| ..+++|.+++++.++++ .++|+++.+.
T Consensus       236 iP~-----A~~~~I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          236 APC-----AMGGVITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             EEC-----SCSCCBCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             cHh-----HHHhhcCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            853     578999999999998 68999999999999777 5888887643

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.18  E-value=2e-10  Score=108.44  Aligned_cols=142  Identities=17%  Similarity=0.144  Sum_probs=96.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiVvl  242 (386)
                      ++|||||+|.||+.+|+.| ...|.  +|++||++......         ....+..   .....+++++++ +||+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l-~~~g~~~~V~~~d~~~~~~~~---------~~~~g~~---~~~~~~~~~~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISK---------AVDLGII---DEGTTSIAKVEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHH---------HHHTTSC---SEEESCGGGGGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHH-HhcCCCcEEEEEeCCHHHHHH---------HHHCCCc---ccccCCHHHHhcCCCCEEEE
Confidence            4799999999999999998 46777  99999998654211         1111211   111357778888 9999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCC---CC-CCCCCCCCCeEEc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP---YM-KPGLSEMKNAIVV  318 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP---~~-~~~L~~~~nvilT  318 (386)
                      |+|.. .+..++ .+....+++++++++++++.....+.+.+.+.++.+.+  .-++..|.   .. ..+|++..+++++
T Consensus        69 avp~~-~~~~v~-~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~  144 (281)
T 2g5c_A           69 SSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILT  144 (281)
T ss_dssp             CSCHH-HHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEEC
T ss_pred             cCCHH-HHHHHH-HHHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEe
Confidence            99964 455555 34667789999999999988766677888886531111  12233232   11 2357777889999


Q ss_pred             CCCCCC
Q 016620          319 PHIASA  324 (386)
Q Consensus       319 PHia~~  324 (386)
                      ||.++.
T Consensus       145 ~~~~~~  150 (281)
T 2g5c_A          145 PTKKTD  150 (281)
T ss_dssp             CCSSSC
T ss_pred             cCCCCC
Confidence            996653

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.17  E-value=1.2e-10  Score=114.62  Aligned_cols=122  Identities=16%  Similarity=0.275  Sum_probs=96.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC---CE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA---DV  239 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a---Di  239 (386)
                      +.+++|||||+|.||+.+|+.| ...|.+|.+||++......         +...+     .....+++|+++.+   |+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L-~~~G~~V~v~dr~~~~~~~---------l~~~g-----~~~~~s~~e~~~~a~~~Dv   84 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRL-RKGGHECVVYDLNVNAVQA---------LEREG-----IAGARSIEEFCAKLVKPRV   84 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHH---------HHTTT-----CBCCSSHHHHHHHSCSSCE
T ss_pred             hcCCEEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHHHH---------HHHCC-----CEEeCCHHHHHhcCCCCCE
Confidence            5678999999999999999998 4789999999998754221         11112     22356899999999   99


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~  301 (386)
                      |++|+|.. .+..++ .+.+..+++|.++||++++...+...+.+.+++..+......|+..
T Consensus        85 Vi~~vp~~-~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg  144 (358)
T 4e21_A           85 VWLMVPAA-VVDSML-QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGG  144 (358)
T ss_dssp             EEECSCGG-GHHHHH-HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECG
T ss_pred             EEEeCCHH-HHHHHH-HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence            99999976 666666 5678889999999999999999999999999887766555555443

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.17  E-value=5.1e-10  Score=106.30  Aligned_cols=155  Identities=14%  Similarity=0.059  Sum_probs=104.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh----hhhhhhhc-CCCC-------ccccccCCHHHH
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKAN-GEQP-------VTWKRASSMDEV  233 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~----~~~~~~~~-~~~~-------~~~~~~~~l~el  233 (386)
                      ++|+|||+|.||..+|+.++ ..|.+|++||++....... .+.    +....... +...       .......+++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~~~-~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTA-FHGFAVTAYDINTDALDAA-KKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSHHHHHHH-HHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHH-HHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            68999999999999999984 7899999999987542211 110    00000000 0000       011234688899


Q ss_pred             hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCC
Q 016620          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMK  313 (386)
Q Consensus       234 l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~  313 (386)
                      +++||+|+.|+|.+.+....+-++....+++++++++.+.+  +...+|.+++... -...++..+.       |.+..+
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~-------p~~~~~  152 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN-------HVWVNN  152 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS-------STTTSC
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC-------CcccCc
Confidence            99999999999988777777777888889999999965544  3567788777543 3556666553       346678


Q ss_pred             CeEEcCCCCCCcHHHHHHHH
Q 016620          314 NAIVVPHIASASKWTREGMA  333 (386)
Q Consensus       314 nvilTPHia~~t~~~~~~~~  333 (386)
                      .+.++||- ..+.+..+...
T Consensus       153 lvevv~~~-~t~~~~~~~~~  171 (283)
T 4e12_A          153 TAEVMGTT-KTDPEVYQQVV  171 (283)
T ss_dssp             EEEEEECT-TSCHHHHHHHH
T ss_pred             eEEEEeCC-CCCHHHHHHHH
Confidence            88999983 34555544443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.15  E-value=7e-11  Score=112.24  Aligned_cols=112  Identities=19%  Similarity=0.094  Sum_probs=89.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+.+|+.| ...|.+|++||++......         +...+     .....++++++++||+|++|+|
T Consensus         2 ~~i~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~~---------~~~~g-----~~~~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNL-VKAGCSVTIWNRSPEKAEE---------LAALG-----AERAATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGGHH---------HHHTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCeEEEEcCCHHHHHH---------HHHCC-----CeecCCHHHHHhcCCEEEEEcC
Confidence            6899999999999999998 4789999999998764211         11111     2345789999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      .......++.  ++.+..+++|.++||+++....+...+.+.+++..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            7666666662  5567789999999999999999999999998876443

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.14  E-value=6.5e-11  Score=113.20  Aligned_cols=119  Identities=23%  Similarity=0.258  Sum_probs=92.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .++|||||+|.||+.+|+.| ...|.+|++||++......         +...+     .....+++++++ ||+|++|+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~~~---------~~~~g-----~~~~~~~~~~~~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRM-TEWPGGVTVYDIRIEAMTP---------LAEAG-----ATLADSVADVAA-ADLIHITV   78 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHH-TTSTTCEEEECSSTTTSHH---------HHHTT-----CEECSSHHHHTT-SSEEEECC
T ss_pred             CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHHHH---------HHHCC-----CEEcCCHHHHHh-CCEEEEEC
Confidence            36899999999999999998 5789999999998764211         11111     233578999999 99999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      |....+..++ ++....+++|.++||++++.....+.+.+.+.+..+......|+.
T Consensus        79 p~~~~~~~v~-~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g  133 (296)
T 3qha_A           79 LDDAQVREVV-GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSG  133 (296)
T ss_dssp             SSHHHHHHHH-HHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEECCEES
T ss_pred             CChHHHHHHH-HHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcC
Confidence            9766777776 678888999999999999999999999999987544433333443

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.13  E-value=9.8e-11  Score=112.12  Aligned_cols=119  Identities=13%  Similarity=0.165  Sum_probs=86.4

Q ss_pred             CCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .++||||| +|.||+.+|+.| +..|.+|++||++..                           .+.++.+++||+|++|
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l-~~~G~~V~~~~~~~~---------------------------~~~~~~~~~aDvVila   72 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDW---------------------------AVAESILANADVVIVS   72 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCG---------------------------GGHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCCHHHHHHHHHH-HhCCCeEEEEECCcc---------------------------cCHHHHhcCCCEEEEe
Confidence            56899999 999999999998 578999999997542                           1456788999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC--CCCCCCCCCeEEcCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHI  321 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~--~~~L~~~~nvilTPHi  321 (386)
                      +|.. .+..++ ++....++++++++++++......+++.+.+  +      .++....|..  ..+++....+++|||-
T Consensus        73 vp~~-~~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~--~------~~~v~~hP~~g~~~~~~~g~~~~l~~~~  142 (298)
T 2pv7_A           73 VPIN-LTLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVH--T------GAVLGLHPMFGADIASMAKQVVVRCDGR  142 (298)
T ss_dssp             SCGG-GHHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHC--S------SEEEEEEECSCTTCSCCTTCEEEEEEEE
T ss_pred             CCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhc--C------CCEEeeCCCCCCCchhhcCCeEEEecCC
Confidence            9964 356665 4456678999999999887654344444332  1      2344445642  2246666689999974

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.10  E-value=1.3e-10  Score=110.36  Aligned_cols=112  Identities=18%  Similarity=0.106  Sum_probs=88.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||..+|+.|+ ..|.+|++|||++.....         +...+     .....++++++++||+|++|+|
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~-~~G~~V~~~dr~~~~~~~---------~~~~g-----~~~~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLV-RAGFDVTVWNRNPAKCAP---------LVALG-----ARQASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHH-HHTCCEEEECSSGGGGHH---------HHHHT-----CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEccCHHHHHHHHHHH-HCCCeEEEEcCCHHHHHH---------HHHCC-----CeecCCHHHHHHcCCEEEEEcC
Confidence            47999999999999999984 678999999998764221         11111     2235689999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ....+..++.  ++.+..+++|.++||++++.....+.+.+.+.+..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           67 DPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            7666666652  4566789999999999999998889999988875443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.10  E-value=8.2e-11  Score=112.77  Aligned_cols=114  Identities=19%  Similarity=0.149  Sum_probs=88.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-cCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ell~~aDiVvl  242 (386)
                      ..++|||||+|.||..+|+.| ...|.+|++||++......         +...+.     .. ..+++|++++||+|++
T Consensus         6 ~~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~~~---------~~~~g~-----~~~~~~~~e~~~~aDvvi~   70 (303)
T 3g0o_A            6 TDFHVGIVGLGSMGMGAARSC-LRAGLSTWGADLNPQACAN---------LLAEGA-----CGAAASAREFAGVVDALVI   70 (303)
T ss_dssp             -CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHH---------HHHTTC-----SEEESSSTTTTTTCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHHHH---------HHHcCC-----ccccCCHHHHHhcCCEEEE
Confidence            346899999999999999998 4689999999998754221         111221     12 4678899999999999


Q ss_pred             ccCCChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          243 HPVLDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       243 ~lPlt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      |+|.......++.  ++.+..+++|.++||+++......+.+.+.+.+..+.
T Consensus        71 ~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           71 LVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             ECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            9997666666653  4566789999999999999998889999998875443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.10  E-value=2.7e-10  Score=116.12  Aligned_cols=125  Identities=15%  Similarity=0.176  Sum_probs=95.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---hCCEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVIS  241 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiVv  241 (386)
                      .++|||||+|.||+.+|+.| ...|.+|.+||++......         +...+..........+++|+++   .+|+|+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L-~~~G~~V~v~dr~~~~~~~---------l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVi   73 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKVDD---------FLANEAKGTKVVGAQSLKEMVSKLKKPRRII   73 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHHHH---------HHHTTTTTSSCEECSSHHHHHHTBCSSCEEE
T ss_pred             CCEEEEEChhHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---------HHhcccCCCceeccCCHHHHHhhccCCCEEE
Confidence            36899999999999999998 4789999999998765321         1111111112223468899887   499999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      +++|....+..++ ++....|++|.++||++++...+...+.+.+.+..+.....-|..
T Consensus        74 l~Vp~~~~v~~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           74 LLVKAGQAVDDFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             ECSCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             EecCChHHHHHHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            9999877777777 678889999999999999999999999999988766555444544

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.09  E-value=6.8e-10  Score=112.48  Aligned_cols=95  Identities=20%  Similarity=0.323  Sum_probs=77.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .++.|++++|+|+|.||+.+|++| +++|++|+++|+++.......         ..+     . ...++++++..+|+|
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~L-aa~GA~Viv~D~~~~~a~~Aa---------~~g-----~-dv~~lee~~~~aDvV  324 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAAL-KQAGARVIVTEIDPICALQAT---------MEG-----L-QVLTLEDVVSEADIF  324 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHH---------HTT-----C-EECCGGGTTTTCSEE
T ss_pred             CcccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHH---------HhC-----C-ccCCHHHHHHhcCEE
Confidence            469999999999999999999998 699999999999875432211         111     1 245788999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +.+.    .+.++++.+.|+.||++++++|+|++.
T Consensus       325 i~at----G~~~vl~~e~l~~mk~gaiVvNaG~~~  355 (488)
T 3ond_A          325 VTTT----GNKDIIMLDHMKKMKNNAIVCNIGHFD  355 (488)
T ss_dssp             EECS----SCSCSBCHHHHTTSCTTEEEEESSSTT
T ss_pred             EeCC----CChhhhhHHHHHhcCCCeEEEEcCCCC
Confidence            9765    457889999999999999999999984

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.09  E-value=2.7e-10  Score=110.15  Aligned_cols=123  Identities=16%  Similarity=0.064  Sum_probs=89.4

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccC-CHHHHhhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDEVLREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell~~aDiV  240 (386)
                      .++|||||+|.||..+|+.| ...| .+|++||++..  ...+...+.    +...+.       .. ++++++++||+|
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L-~~~G~~~V~~~dr~~~~~~~~~~~~~~----~~~~g~-------~~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGL-GGRNAARLAAYDLRFNDPAASGALRAR----AAELGV-------EPLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECGGGGCTTTHHHHHHH----HHHTTC-------EEESSGGGGGGCSEE
T ss_pred             CCeEEEECccHHHHHHHHHH-HHcCCCeEEEEeCCCccccchHHHHHH----HHHCCC-------CCCCHHHHHhcCCEE
Confidence            36899999999999999998 4789 99999999862  000000000    111121       35 778899999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED  301 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~  301 (386)
                      ++|+|.......+  .+....++++.++||+++......+.+.+.+++..+.....-|+.+
T Consensus        92 i~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~  150 (317)
T 4ezb_A           92 LSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR  150 (317)
T ss_dssp             EECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC
T ss_pred             EEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC
Confidence            9999976554443  6777889999999999999999999999999875443322234443

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.05  E-value=4.6e-10  Score=105.44  Aligned_cols=196  Identities=17%  Similarity=0.118  Sum_probs=122.3

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC---CCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHh
Q 016620           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGD---KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (386)
Q Consensus        30 ~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~---~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~  106 (386)
                      ...+++.|.+..+...   ..+++++.+.+..   .+.++.+.  .++.++.+..++++  +.++....|+|.++.    
T Consensus        21 ~~~~~~~g~~~~y~~~---~~~~~~l~~~i~~l~~~~~G~~vt--~P~k~~i~~~~~~l--~~~a~~~gavn~i~~----   89 (263)
T 2d5c_A           21 AFALESLGLEGSYEAW---DTPLEALPGRLKEVRRAFRGVNLT--LPLKEAALAHLDWV--SPEAQRIGAVNTVLQ----   89 (263)
T ss_dssp             HHHHHHTTCCEEEEEE---ECCGGGHHHHHHHHHHHCSEEEEC--TTCTTGGGGGCSEE--CHHHHHHTCCCEEEE----
T ss_pred             HHHHHHcCCCCEEEEE---eCCHHHHHHHHHhccccCceEEEc--ccCHHHHHHHHHHH--hHHHHHhCCCCcEEc----
Confidence            4556777877655432   1244444443321   14444443  34556677777765  566667778888864    


Q ss_pred             hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (386)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~  186 (386)
                      +.|-.    .|+++..     .+++.++.|.                      +.++.| +++|||+|.||+.+|+.| .
T Consensus        90 ~~g~~----~g~ntd~-----~g~~~~l~~~----------------------~~~l~~-~v~iiG~G~~g~~~a~~l-~  136 (263)
T 2d5c_A           90 VEGRL----FGFNTDA-----PGFLEALKAG----------------------GIPLKG-PALVLGAGGAGRAVAFAL-R  136 (263)
T ss_dssp             ETTEE----EEECCHH-----HHHHHHHHHT----------------------TCCCCS-CEEEECCSHHHHHHHHHH-H
T ss_pred             cCCeE----EEeCCCH-----HHHHHHHHHh----------------------CCCCCC-eEEEECCcHHHHHHHHHH-H
Confidence            33422    3445443     2444443320                      135889 999999999999999998 5


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCCh--hhhhcccHHHHhcCCC
Q 016620          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK--TTYHLINKERLATMKK  264 (386)
Q Consensus       187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~--~t~~li~~~~~~~mk~  264 (386)
                      ..|++|.++||+.... +...+.+       +.     . ..+++++ +++|+|++|+|...  ++...+.   ...+++
T Consensus       137 ~~g~~v~v~~r~~~~~-~~l~~~~-------~~-----~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~  198 (263)
T 2d5c_A          137 EAGLEVWVWNRTPQRA-LALAEEF-------GL-----R-AVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPE  198 (263)
T ss_dssp             HTTCCEEEECSSHHHH-HHHHHHH-------TC-----E-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCS
T ss_pred             HCCCEEEEEECCHHHH-HHHHHHh-------cc-----c-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCC
Confidence            7888999999986532 2111111       11     1 3477788 99999999999762  2224443   466899


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          265 EAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       265 gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      |++++|++.+.. +. .|.+++++.
T Consensus       199 g~~viD~~~~p~-~t-~l~~~a~~~  221 (263)
T 2d5c_A          199 EGAAVDLVYRPL-WT-RFLREAKAK  221 (263)
T ss_dssp             SSEEEESCCSSS-SC-HHHHHHHHT
T ss_pred             CCEEEEeecCCc-cc-HHHHHHHHC
Confidence            999999998743 44 477777653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.04  E-value=2.1e-10  Score=106.69  Aligned_cols=107  Identities=10%  Similarity=0.153  Sum_probs=66.0

Q ss_pred             cCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhH-------------HHHHHhhhhhhhhh
Q 016620          150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-------------LEKFVTAYGQFLKA  216 (386)
Q Consensus       150 ~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~-------------~~~~~~~~~~~~~~  216 (386)
                      |..|........++.+++|||||+|.||+.+|+.| ...|.+|++|||+....             ...+.       ..
T Consensus         4 ~~~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------~~   75 (245)
T 3dtt_A            4 DKIHHHHHHENLYFQGMKIAVLGTGTVGRTMAGAL-ADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWL-------PE   75 (245)
T ss_dssp             ---------------CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHTCC-------CCHHHHG-------GG
T ss_pred             ccccccccccccccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHH-------hh
Confidence            43444444456789999999999999999999998 47899999999987641             11110       01


Q ss_pred             cCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHH-HhcCCCCcEEEEcC
Q 016620          217 NGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCS  272 (386)
Q Consensus       217 ~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~-~~~mk~gailIN~a  272 (386)
                      .+     .....+++|++++||+|++|+|..... ..+. +. ...+ ++.++|+++
T Consensus        76 ~~-----~~~~~~~~e~~~~aDvVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           76 HP-----HVHLAAFADVAAGAELVVNATEGASSI-AALT-AAGAENL-AGKILVDIA  124 (245)
T ss_dssp             ST-----TCEEEEHHHHHHHCSEEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECC
T ss_pred             cC-----ceeccCHHHHHhcCCEEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECC
Confidence            11     123468899999999999999965433 3322 22 2334 799999999

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.02  E-value=1.8e-10  Score=112.42  Aligned_cols=136  Identities=21%  Similarity=0.199  Sum_probs=92.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ..+.+++|||||+|.||+++|+.| +..|++|++++++.....+.        ....+.     ... ++++++++||+|
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L-~~~G~~V~~~~~~~~~~~~~--------a~~~G~-----~~~-~~~e~~~~aDvV   76 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAK--------AEAHGL-----KVA-DVKTAVAAADVV   76 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHH--------HHHTTC-----EEE-CHHHHHHTCSEE
T ss_pred             chhcCCEEEEECchHHHHHHHHHH-HHCcCEEEEEECChHHHHHH--------HHHCCC-----EEc-cHHHHHhcCCEE
Confidence            458899999999999999999998 57899999999976442221        111121     122 788999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc-eEEeeccCCCCCCC-C---CCCC---C
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF-RVGLDVFEDEPYMK-P---GLSE---M  312 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~-gaalDV~~~EP~~~-~---~L~~---~  312 (386)
                      ++|+|... ...++.++....+++|+++++++ |  ++.  ..     +.+. ...+||+..+|... .   .+++   -
T Consensus        77 ilavp~~~-~~~v~~~~i~~~l~~~~ivi~~~-g--v~~--~~-----~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g  145 (338)
T 1np3_A           77 MILTPDEF-QGRLYKEEIEPNLKKGATLAFAH-G--FSI--HY-----NQVVPRADLDVIMIAPKAPGHTVRSEFVKGGG  145 (338)
T ss_dssp             EECSCHHH-HHHHHHHHTGGGCCTTCEEEESC-C--HHH--HT-----TSSCCCTTCEEEEEEESSCSHHHHHHHHTTCC
T ss_pred             EEeCCcHH-HHHHHHHHHHhhCCCCCEEEEcC-C--chh--HH-----HhhcCCCCcEEEeccCCCCchhHHHHHhccCC
Confidence            99999643 35555446667899999999874 3  222  11     2222 34467777677422 1   2444   5


Q ss_pred             CCeEEcCCCC
Q 016620          313 KNAIVVPHIA  322 (386)
Q Consensus       313 ~nvilTPHia  322 (386)
                      .++++|||-.
T Consensus       146 ~~~ii~~~~~  155 (338)
T 1np3_A          146 IPDLIAIYQD  155 (338)
T ss_dssp             CCEEEEEEEC
T ss_pred             CeEEEEecCC
Confidence            6788999854

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.01  E-value=5.8e-10  Score=110.77  Aligned_cols=113  Identities=20%  Similarity=0.267  Sum_probs=78.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-------cCCCCcccc---------
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-------NGEQPVTWK---------  225 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---------  225 (386)
                      .+.+.+|+|+|+|.||..+|+.+ +++|++|++||++......  ...++...-.       .+.....+.         
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l~~--~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~  263 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATA-RRLGAVVSATDVRPAAKEQ--VASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQV  263 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSTTHHHH--HHHTTCEECCCCC-----------------CHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHHHHH--HHHcCCceeecccccccccccccchhhhcchhhhh
Confidence            47899999999999999999996 7999999999998754211  1111100000       000000000         


Q ss_pred             -ccCCHHHHhhhCCEEEEcc--CCChhhhhcccHHHHhcCCCCcEEEEcC--CCcccC
Q 016620          226 -RASSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVID  278 (386)
Q Consensus       226 -~~~~l~ell~~aDiVvl~l--Plt~~t~~li~~~~~~~mk~gailIN~a--Rg~~vd  278 (386)
                       ...++++.+++||+|+.++  |.. .+..+++++.++.||+|+++||+|  +|+.++
T Consensus       264 ~~~~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e  320 (405)
T 4dio_A          264 KQAALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIE  320 (405)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBT
T ss_pred             hhHhHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCcc
Confidence             0136789999999999885  543 457889999999999999999998  666554

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.00  E-value=2e-09  Score=102.08  Aligned_cols=143  Identities=20%  Similarity=0.146  Sum_probs=94.7

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|||||+|.||+.+|+.|++ ++|.+|++||++......         +...+..   .....++++++++||+|++|+
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~---------~~~~g~~---~~~~~~~~~~~~~aDvVilav   74 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDI---------ALERGIV---DEATADFKVFAALADVIILAV   74 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHH---------HHHTTSC---SEEESCTTTTGGGCSEEEECS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHH---------HHHcCCc---ccccCCHHHhhcCCCEEEEcC
Confidence            689999999999999998854 347899999998654211         1111211   012356778889999999999


Q ss_pred             CCChhhhhcccHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee---ccCC---CCCC-CCCCCCCCCeE
Q 016620          245 VLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD---VFED---EPYM-KPGLSEMKNAI  316 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~-mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalD---V~~~---EP~~-~~~L~~~~nvi  316 (386)
                      |... ...++ .+.... +++++++++++++.....+.+.+.+.+..+.  .++   ++..   .|.. ...+++..+++
T Consensus        75 p~~~-~~~v~-~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~--~v~~~P~~g~~~~g~~~a~~~l~~g~~~~  150 (290)
T 3b1f_A           75 PIKK-TIDFI-KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQ--FVGSHPMAGSHKSGAVAANVNLFENAYYI  150 (290)
T ss_dssp             CHHH-HHHHH-HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCE--EEEEEEC-----CCTTSCCTTTTTTSEEE
T ss_pred             CHHH-HHHHH-HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCE--EEEeCCcCCCCcchHHHhhHHHhCCCeEE
Confidence            9533 34454 345667 8999999999988776667888877651121  122   1111   1221 13577777899


Q ss_pred             EcCCCCCC
Q 016620          317 VVPHIASA  324 (386)
Q Consensus       317 lTPHia~~  324 (386)
                      ++||.++.
T Consensus       151 ~~~~~~~~  158 (290)
T 3b1f_A          151 FSPSCLTK  158 (290)
T ss_dssp             EEECTTCC
T ss_pred             EecCCCCC
Confidence            99987553

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.97  E-value=1.3e-09  Score=103.19  Aligned_cols=195  Identities=16%  Similarity=0.175  Sum_probs=115.4

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhcC----CCcEEEecCCccccHHHHHHhhccCCcEEEEccccccccChhHHh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD----KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~----~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~  106 (386)
                      ..+++.|.+..+....   .+++++.+.+..    +++++.+..  +..++.+..+..+  .-.+....++|.++.    
T Consensus        33 ~~~~~~g~~~~y~~~~---~~~~~l~~~i~~l~~~~~~G~nvti--P~k~~i~~~ld~l--~~~A~~~gavnti~~----  101 (275)
T 2hk9_A           33 ALIRYAGLNAVYLAFE---INPEELKKAFEGFKALKVKGINVTV--PFKEEIIPLLDYV--EDTAKEIGAVNTVKF----  101 (275)
T ss_dssp             HHHHHHTCSEEEEEEE---CCGGGHHHHHHHHHHHTCCEEEECT--TSTTTTGGGCSEE--CHHHHHHTCCCEEEE----
T ss_pred             HHHHHcCCCcEEEEEE---CCHHHHHHHHHHHHhCCCCEEEECc--cCHHHHHHHHHHh--hHHHHHhCCcceEEe----
Confidence            4566667666543332   234444443321    467776653  3345555555554  444444556666643    


Q ss_pred             hCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHh
Q 016620          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (386)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~  186 (386)
                      +.|-.    .|+|+...     +++.++.|          .            +.++.|++++|||.|.+|+++|+.| .
T Consensus       102 ~~g~~----~g~nTd~~-----G~~~~l~~----------~------------~~~~~~~~v~iiGaG~~g~aia~~L-~  149 (275)
T 2hk9_A          102 ENGKA----YGYNTDWI-----GFLKSLKS----------L------------IPEVKEKSILVLGAGGASRAVIYAL-V  149 (275)
T ss_dssp             ETTEE----EEECCHHH-----HHHHHHHH----------H------------CTTGGGSEEEEECCSHHHHHHHHHH-H
T ss_pred             eCCEE----EeecCCHH-----HHHHHHHH----------h------------CCCcCCCEEEEECchHHHHHHHHHH-H
Confidence            33422    24444332     33333322          0            1357889999999999999999998 4


Q ss_pred             cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChh--hhhcccHHHHhcCCC
Q 016620          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT--TYHLINKERLATMKK  264 (386)
Q Consensus       187 ~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~--t~~li~~~~~~~mk~  264 (386)
                      ..|++|+++||+.... ++..       +.   .+  .....+++++++++|+|++|+|....  +...++   +..+++
T Consensus       150 ~~g~~V~v~~r~~~~~-~~l~-------~~---~g--~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~  213 (275)
T 2hk9_A          150 KEGAKVFLWNRTKEKA-IKLA-------QK---FP--LEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKK  213 (275)
T ss_dssp             HHTCEEEEECSSHHHH-HHHT-------TT---SC--EEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCT
T ss_pred             HcCCEEEEEECCHHHH-HHHH-------HH---cC--CeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCC
Confidence            6788999999986542 1110       01   11  12233788889999999999997542  223443   456899


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHc
Q 016620          265 EAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       265 gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      |.+++|++.   .. ..+.+..++
T Consensus       214 g~~viDv~~---~~-t~ll~~a~~  233 (275)
T 2hk9_A          214 DHVVVDIIY---KE-TKLLKKAKE  233 (275)
T ss_dssp             TSEEEESSS---SC-CHHHHHHHH
T ss_pred             CCEEEEcCC---Ch-HHHHHHHHH
Confidence            999999988   33 334444443

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.95  E-value=1.7e-09  Score=102.90  Aligned_cols=109  Identities=18%  Similarity=0.203  Sum_probs=85.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|+|||+|.||+.+|+.| ...|.+|.+||++..... .        +...+     .....+++++++++|+|++|+|
T Consensus         6 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~~-~--------~~~~g-----~~~~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAIA-D--------VIAAG-----AETASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH-H--------HHHTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-H--------HHHCC-----CeecCCHHHHHhCCCEEEEECC
Confidence            4899999999999999998 467899999999865421 1        11111     2234688899999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ....+..++.  ++....+++|.++|+++.|...+.+.|.+.+.+.
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  116 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAK  116 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            7666666663  3456778999999999999887788899988764

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.93  E-value=3e-09  Score=101.21  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=85.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+.+|+.| ...|.+|++||++..... .        +...+     .....++++++.++|+|++|+|
T Consensus         5 ~~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~~-~--------~~~~g-----~~~~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINL-LKEGVTVYAFDLMEANVA-A--------VVAQG-----AQACENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHH-HHTTCEEEEECSSHHHHH-H--------HHTTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHHH-H--------HHHCC-----CeecCCHHHHHhCCCEEEEECC
Confidence            5899999999999999998 467899999999865421 1        11111     2234688999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ....+..++.  ++....++++.++|++++|...+.+.|.+.+.+.
T Consensus        70 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~  115 (301)
T 3cky_A           70 NAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK  115 (301)
T ss_dssp             SHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            7666777764  3566778999999999999877788898888764

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.91  E-value=1.3e-09  Score=106.36  Aligned_cols=132  Identities=14%  Similarity=0.128  Sum_probs=87.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh----CCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----ADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----aDiV  240 (386)
                      -++|||||+|.||+++|+.| +..|.+|++||++......         ....+.     ....++++++++    ||+|
T Consensus         8 ~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~~---------a~~~G~-----~~~~~~~e~~~~a~~~aDlV   72 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDL-HAANHSVFGYNRSRSGAKS---------AVDEGF-----DVSADLEATLQRAAAEDALI   72 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHHHHH---------HHHTTC-----CEESCHHHHHHHHHHTTCEE
T ss_pred             CCEEEEEeecHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---------HHHcCC-----eeeCCHHHHHHhcccCCCEE
Confidence            35799999999999999998 5789999999998754321         111221     224678888765    6999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC----------CCCCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM----------KPGLS  310 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~----------~~~L~  310 (386)
                      ++|+|. ..+..++ ++ +..++++++++|++..+..-.+++.+.+.       ...+....|..          ...|+
T Consensus        73 ilavP~-~~~~~vl-~~-l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~-------~~~~v~~HPmaG~e~sG~~aa~~~Lf  142 (341)
T 3ktd_A           73 VLAVPM-TAIDSLL-DA-VHTHAPNNGFTDVVSVKTAVYDAVKARNM-------QHRYVGSHPMAGTANSGWSASMDGLF  142 (341)
T ss_dssp             EECSCH-HHHHHHH-HH-HHHHCTTCCEEECCSCSHHHHHHHHHTTC-------GGGEECEEECCSCC-CCGGGCCSSTT
T ss_pred             EEeCCH-HHHHHHH-HH-HHccCCCCEEEEcCCCChHHHHHHHHhCC-------CCcEecCCccccccccchhhhhhHHh
Confidence            999995 4566665 33 34458999999998765422223332221       12222334432          13578


Q ss_pred             CCCCeEEcCCC
Q 016620          311 EMKNAIVVPHI  321 (386)
Q Consensus       311 ~~~nvilTPHi  321 (386)
                      +..++++||+-
T Consensus       143 ~g~~~iltp~~  153 (341)
T 3ktd_A          143 KRAVWVVTFDQ  153 (341)
T ss_dssp             TTCEEEECCGG
T ss_pred             cCCeEEEEeCC
Confidence            87889999974

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.90  E-value=9.7e-09  Score=96.66  Aligned_cols=145  Identities=12%  Similarity=0.050  Sum_probs=91.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|+|||+|.||+.+|+.| ...|.+|++||++......         +...+..   .....+++++ .++|+|++|+|
T Consensus         1 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~~~---------~~~~g~~---~~~~~~~~~~-~~~D~vi~av~   66 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTCEK---------AVERQLV---DEAGQDLSLL-QTAKIIFLCTP   66 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHH---------HHHTTSC---SEEESCGGGG-TTCSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHH---------HHhCCCC---ccccCCHHHh-CCCCEEEEECC
Confidence            4799999999999999998 4678999999998654211         1111211   0123577888 89999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC---CCC-CCCCCCCCCeEEcCCC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE---PYM-KPGLSEMKNAIVVPHI  321 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~E---P~~-~~~L~~~~nvilTPHi  321 (386)
                      . ..+..++ .+....+++++++|+++.......+.+.+.+.  ++.+. .-++..+   |.. ...++..+.++++|+-
T Consensus        67 ~-~~~~~~~-~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~  141 (279)
T 2f1k_A           67 I-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGAEENLFVNAPYVLTPTE  141 (279)
T ss_dssp             H-HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGCCTTTTTTCEEEEEECT
T ss_pred             H-HHHHHHH-HHHHhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHHhHHHhCCCcEEEecCC
Confidence            4 3445554 45667789999999998766655555555432  22221 1222111   111 1245666678999975


Q ss_pred             CCCcHHHHH
Q 016620          322 ASASKWTRE  330 (386)
Q Consensus       322 a~~t~~~~~  330 (386)
                      ++ +.+..+
T Consensus       142 ~~-~~~~~~  149 (279)
T 2f1k_A          142 YT-DPEQLA  149 (279)
T ss_dssp             TC-CHHHHH
T ss_pred             CC-CHHHHH
Confidence            43 444333

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.90  E-value=7.8e-09  Score=105.43  Aligned_cols=118  Identities=14%  Similarity=0.126  Sum_probs=89.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADV  239 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDi  239 (386)
                      ...++|||||+|.||+.+|+.|+ ..|.+|.+|||+..... ...+       ...  ..+.....+++++++.   +|+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La-~~G~~V~v~~r~~~~~~-~l~~-------~~~--~~gi~~~~s~~e~v~~l~~aDv   81 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIE-SRGYTVSIFNRSREKTE-EVIA-------ENP--GKKLVPYYTVKEFVESLETPRR   81 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHH-TTTCCEEEECSSHHHHH-HHHH-------HST--TSCEEECSSHHHHHHTBCSSCE
T ss_pred             cCCCeEEEEccHHHHHHHHHHHH-hCCCeEEEEeCCHHHHH-HHHh-------hCC--CCCeEEeCCHHHHHhCCCCCCE
Confidence            56678999999999999999984 67999999999875432 1111       110  0123335689998887   999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      |++++|....+..++ ++....+++|.++||++.|...+...+.+.+.+..+.
T Consensus        82 Vil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           82 ILLMVKAGAGTDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             EEECSCSSSHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEEECCCHHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            999999877778877 4677889999999999999988888898888765443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.89  E-value=3.1e-09  Score=100.86  Aligned_cols=108  Identities=22%  Similarity=0.279  Sum_probs=81.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+.+|+.| ...|.+|++||++..... .        +...+     .....+++++++++|+|++|+|
T Consensus         1 m~i~iiG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~~-~--------~~~~g-----~~~~~~~~~~~~~~Dvvi~~vp   65 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNL-MKHGYPLIIYDVFPDACK-E--------FQDAG-----EQVVSSPADVAEKADRIITMLP   65 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHH-HHTTCCEEEECSSTHHHH-H--------HHTTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CeEEEEeccHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H--------HHHcC-----CeecCCHHHHHhcCCEEEEeCC
Confidence            4799999999999999998 467899999999865421 1        11111     2234688999999999999999


Q ss_pred             CChhhhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       246 lt~~t~~li~~--~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      ....+..++..  ..++.++++.++|+++....-+.+.+.+.+.+
T Consensus        66 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~  110 (296)
T 2gf2_A           66 TSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEK  110 (296)
T ss_dssp             SHHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            76666666543  24567899999999888777666777777764

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.85  E-value=2.2e-09  Score=101.71  Aligned_cols=108  Identities=17%  Similarity=0.134  Sum_probs=82.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+.+|+.| ...|.+|++|| +.... +.        +...+     .....+++++++++|+|++|+|
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~-~~~~~-~~--------~~~~g-----~~~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINL-ARAGHQLHVTT-IGPVA-DE--------LLSLG-----AVNVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHH-HHTTCEEEECC-SSCCC-HH--------HHTTT-----CBCCSSHHHHHHTCSEEEECCS
T ss_pred             CEEEEEccCHHHHHHHHHH-HhCCCEEEEEc-CHHHH-HH--------HHHcC-----CcccCCHHHHHhcCCEEEEECC
Confidence            4899999999999999998 46799999999 65432 11        11111     2234688999999999999999


Q ss_pred             CChhhhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       246 lt~~t~~li~~--~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ...++..++..  +....+++|.++|+++.|...+.+.|.+.+.+.
T Consensus        68 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  113 (295)
T 1yb4_A           68 DTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM  113 (295)
T ss_dssp             SHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            76556666542  455678999999999999888888999998863

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.84  E-value=3e-08  Score=94.71  Aligned_cols=147  Identities=18%  Similarity=0.163  Sum_probs=93.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      -+.++|||||+|.||.+||..| . .|.+|++||+++...... .+.    +...  ...+.....++++ +++||+|+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~l-a-aG~~V~v~d~~~~~~~~~-~~~----l~~~--~~~~i~~~~~~~~-~~~aDlVie   79 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAI-A-SKHEVVLQDVSEKALEAA-REQ----IPEE--LLSKIEFTTTLEK-VKDCDIVME   79 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHHHHH-HHH----SCGG--GGGGEEEESSCTT-GGGCSEEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHH-H-cCCEEEEEECCHHHHHHH-HHH----HHHH--HhCCeEEeCCHHH-HcCCCEEEE
Confidence            4678999999999999999998 5 799999999987643221 110    0000  0001222456666 899999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHI  321 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHi  321 (386)
                      |+|.+.+.+..+-.+ +..+ +++++ +|+|.-.+   ..+.++++ ......++..|.  |.     ...+-+.++|+-
T Consensus        80 avpe~~~vk~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~--Pv-----~~~~lveiv~g~  146 (293)
T 1zej_A           80 AVFEDLNTKVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN--PP-----HVMPLVEIVISR  146 (293)
T ss_dssp             CCCSCHHHHHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS--ST-----TTCCEEEEEECT
T ss_pred             cCcCCHHHHHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC--cc-----ccCCEEEEECCC
Confidence            999988766655444 5666 89888 58877554   44444443 223466666665  32     345667777753


Q ss_pred             CCCcHHHHHHHH
Q 016620          322 ASASKWTREGMA  333 (386)
Q Consensus       322 a~~t~~~~~~~~  333 (386)
                       ..+.++.+++.
T Consensus       147 -~t~~~~~~~~~  157 (293)
T 1zej_A          147 -FTDSKTVAFVE  157 (293)
T ss_dssp             -TCCHHHHHHHH
T ss_pred             -CCCHHHHHHHH
Confidence             23455555443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.83  E-value=1.9e-08  Score=103.01  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=88.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiVvl  242 (386)
                      .+|||||+|.||+.+|+.|+ ..|.+|.+|||+...... ..+.      ...  ..+.....+++++++.   +|+|++
T Consensus        11 ~~IgvIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~~~-l~~~------~~~--~~gi~~~~s~~e~v~~l~~aDvVil   80 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAA-DHGFTVCAYNRTQSKVDH-FLAN------EAK--GKSIIGATSIEDFISKLKRPRKVML   80 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSSHHHHH-HHHT------TTT--TSSEECCSSHHHHHHTSCSSCEEEE
T ss_pred             CCEEEEeeHHHHHHHHHHHH-HCCCEEEEEeCCHHHHHH-HHcc------ccc--CCCeEEeCCHHHHHhcCCCCCEEEE
Confidence            47999999999999999985 678999999998765321 1110      000  0123335689998887   999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++|....+..++ ++....+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        81 ~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           81 LVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             CCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EcCChHHHHHHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            999877777777 5677889999999999999888888898888764443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.83  E-value=1e-08  Score=96.77  Aligned_cols=106  Identities=18%  Similarity=0.231  Sum_probs=81.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|+|||+|.||+.+|+.|+ . |.+|.+||++...... .        ...+.     .... +++++.++|+|++|+|
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~-~-g~~V~~~~~~~~~~~~-~--------~~~g~-----~~~~-~~~~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLA-R-RFPTLVWNRTFEKALR-H--------QEEFG-----SEAV-PLERVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHH-T-TSCEEEECSSTHHHHH-H--------HHHHC-----CEEC-CGGGGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHh-C-CCeEEEEeCCHHHHHH-H--------HHCCC-----cccC-HHHHHhCCCEEEEeCC
Confidence            47999999999999999984 6 9999999998654211 1        11111     1123 6677889999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ....+..++ ++....+++|.++|+++.+...+.+.|.+.+.+.
T Consensus        65 ~~~~~~~v~-~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  107 (289)
T 2cvz_A           65 TTREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREK  107 (289)
T ss_dssp             SHHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            755566655 5566778999999999999888888999998864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.81  E-value=8.2e-09  Score=99.07  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=82.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+.+|+.| ...|.+|.+||++..... .        +...+     .....+++++++++|+|++|+|
T Consensus        31 ~~I~iIG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~~-~--------~~~~g-----~~~~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNL-LKMGHTVTVWNRTAEKCD-L--------FIQEG-----ARLGRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSSGGGGH-H--------HHHTT-----CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-H--------HHHcC-----CEEcCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999998 467899999999865421 1        11111     1234578899999999999999


Q ss_pred             CChhhhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       246 lt~~t~~li~~--~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ....+..++..  ..+..++++.++|+++++.....+.|.+.+...
T Consensus        96 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  141 (316)
T 2uyy_A           96 DPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSR  141 (316)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            66666665533  235678999999999998877778888888653

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.80  E-value=1.2e-07  Score=95.75  Aligned_cols=156  Identities=16%  Similarity=0.143  Sum_probs=96.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC--------ccccccCCHHHHhhhC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--------VTWKRASSMDEVLREA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell~~a  237 (386)
                      ++|+|||+|.||..||..++ ..|.+|++||++...........+.. +.+.+...        .......+++ .+++|
T Consensus        55 ~kVaVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~a~~~i~~~l~~-~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~a  131 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFG-LAGIETFLVVRNEQRCKQELEVMYAR-EKSFKRLNDKRIEKINANLKITSDFH-KLSNC  131 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHH-HHHTTSCCHHHHHHHHTTEEEESCGG-GCTTC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCeEEEEECcHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHhcceEEeCCHH-HHccC
Confidence            68999999999999999985 67999999999876321111011100 11112110        0112245675 68999


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEE
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIV  317 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvil  317 (386)
                      |+|+.|+|.+.+.+.-+-++..+.++++++|++.+.+  +....|.+.+.. .-..+++..|.  |..     .++-+.+
T Consensus       132 DlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn--Pv~-----~m~LvEI  201 (460)
T 3k6j_A          132 DLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN--PAN-----VIRLVEI  201 (460)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS--STT-----TCCEEEE
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC--hhHHHHHHhccC-CcceEEEEecc--hhh-----hCCEEEE
Confidence            9999999987776655556777889999999644333  334556655543 24567777776  332     3444667


Q ss_pred             cCCCCCCcHHHHHHHHHH
Q 016620          318 VPHIASASKWTREGMATL  335 (386)
Q Consensus       318 TPHia~~t~~~~~~~~~~  335 (386)
                      +|+- ..+.++.+.+..+
T Consensus       202 v~g~-~Ts~e~~~~~~~l  218 (460)
T 3k6j_A          202 IYGS-HTSSQAIATAFQA  218 (460)
T ss_dssp             ECCS-SCCHHHHHHHHHH
T ss_pred             EeCC-CCCHHHHHHHHHH
Confidence            7752 2345555554433

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.80  E-value=2.4e-08  Score=101.61  Aligned_cols=116  Identities=16%  Similarity=0.152  Sum_probs=87.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDiVvl  242 (386)
                      ++|||||+|.||+.+|+.|+ ..|.+|.+|||+.... +...+       ..+  ..+.....+++++++.   +|+|++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~-~~l~~-------~~~--~~gi~~~~s~~e~v~~l~~aDvVil   74 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVE-SRGYTVAIYNRTTSKT-EEVFK-------EHQ--DKNLVFTKTLEEFVGSLEKPRRIML   74 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHH-------HTT--TSCEEECSSHHHHHHTBCSSCEEEE
T ss_pred             CcEEEEeeHHHHHHHHHHHH-hCCCEEEEEcCCHHHH-HHHHH-------hCc--CCCeEEeCCHHHHHhhccCCCEEEE
Confidence            57999999999999999984 6789999999986542 22111       110  0112335689998876   999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g  293 (386)
                      |+|....+..++ ++....+++|.++|+++.|...+...+.+.+.+..+..
T Consensus        75 avp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~  124 (474)
T 2iz1_A           75 MVQAGAATDATI-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF  124 (474)
T ss_dssp             CCCTTHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEE
T ss_pred             EccCchHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeE
Confidence            999877777776 46677899999999999998888888888887644433

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.77  E-value=2.5e-08  Score=101.73  Aligned_cols=118  Identities=14%  Similarity=0.172  Sum_probs=87.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh---hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~---~aDiVvl  242 (386)
                      ++|||||+|.||+.+|+.|+ ..|.+|.+|||+..... ...+.      ...  ..+.....+++++++   .+|+|++
T Consensus         3 m~IgvIG~G~mG~~lA~~La-~~G~~V~v~dr~~~~~~-~l~~~------~~~--g~gi~~~~~~~e~v~~l~~aDvVil   72 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMN-DHGFVVCAFNRTVSKVD-DFLAN------EAK--GTKVLGAHSLEEMVSKLKKPRRIIL   72 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSTHHHH-HHHHT------TTT--TSSCEECSSHHHHHHHBCSSCEEEE
T ss_pred             CeEEEEChHHHHHHHHHHHH-HCCCeEEEEeCCHHHHH-HHHhc------ccc--CCCeEEeCCHHHHHhhccCCCEEEE
Confidence            57999999999999999984 67899999999865422 11110      000  011223568888875   8999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga  294 (386)
                      ++|....+..++ ++....+++|.++|+++.|...+...+.+.+.+..+...
T Consensus        73 aVp~~~~v~~vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v  123 (482)
T 2pgd_A           73 LVKAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (482)
T ss_dssp             CSCTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             eCCChHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEe
Confidence            999876777776 456778999999999999988888888888876544433

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.76  E-value=3e-08  Score=101.05  Aligned_cols=124  Identities=18%  Similarity=0.219  Sum_probs=89.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhh---CCEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLRE---ADVI  240 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~---aDiV  240 (386)
                      ++|||||+|.||+.+|+.|+ ..|.+|.+|||+.... +...+.       .+.  .+.......+++++++.   +|+|
T Consensus         2 MkIgVIG~G~mG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~-------~g~~~~~~~i~~~~~~~e~v~~l~~aDvV   72 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIA-EKGFKVAVFNRTYSKS-EEFMKA-------NASAPFAGNLKAFETMEAFAASLKKPRKA   72 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHHH-------TTTSTTGGGEEECSCHHHHHHHBCSSCEE
T ss_pred             CEEEEEChHHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHHHh-------cCCCCCCCCeEEECCHHHHHhcccCCCEE
Confidence            47999999999999999984 6789999999986542 221111       010  01112345688898875   9999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeecc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~  299 (386)
                      ++++|....+..++ ++....+++|.++|+++.|...+...+.+.+.+..+.....-|.
T Consensus        73 ilaVp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~  130 (478)
T 1pgj_A           73 LILVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGIS  130 (478)
T ss_dssp             EECCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             EEecCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeecc
Confidence            99999876777776 56677899999999999998888888998888654443333333

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.74  E-value=2.4e-08  Score=98.18  Aligned_cols=108  Identities=17%  Similarity=0.234  Sum_probs=80.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (386)
                      ++.|++|+|+|+|+||+.+|+.| ..+|++|+++|++... ..++.+.+       +     . ...+.++++. .||++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L-~~~GakVvv~D~~~~~-l~~~a~~~-------g-----a-~~v~~~~ll~~~~DIv  234 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAA-VSAAVAEE-------G-----A-DAVAPNAIYGVTCDIF  234 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHHH-------C-----C-EECCGGGTTTCCCSEE
T ss_pred             CCCcCEEEEECchHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHc-------C-----C-EEEChHHHhccCCcEe
Confidence            69999999999999999999998 6899999999987643 22222211       1     1 1235556665 89999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      +.|.     +.++|+.+.++.|+ ..++++.+++++.+++ ..+.|+++.+
T Consensus       235 ip~a-----~~~~I~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi  278 (364)
T 1leh_A          235 APCA-----LGAVLNDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI  278 (364)
T ss_dssp             EECS-----CSCCBSTTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred             eccc-----hHHHhCHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence            9874     56788888888884 5689999999988755 4566776654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.72  E-value=6.7e-08  Score=98.16  Aligned_cols=149  Identities=14%  Similarity=0.215  Sum_probs=92.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhh----h----hhhhhhcCCCCccccccCCHHHHhhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTA----Y----GQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~-fg~~V~~~d~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      ++|+|||+|.||..+|..|++. .|.+|++||++...... ....    +    .+.+....  ..+.....++++.+++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~-l~~g~~~i~e~~l~~~~~~~~--~~~~~~t~~~~e~~~~   82 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINA-WNSPTLPIYEPGLKEVVESCR--GKNLFFSTNIDDAIKE   82 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHH-HTSSSCSSCCTTHHHHHHHHB--TTTEEEESCHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHH-HhCCCCCcCCCCHHHHHHHhh--cCCEEEECCHHHHHhc
Confidence            5899999999999999998642 28999999998754221 0000    0    00000000  0112234678889999


Q ss_pred             CCEEEEccCCChhhhh-----------cc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEee-ccCCC
Q 016620          237 ADVISLHPVLDKTTYH-----------LI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD-VFEDE  302 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~-----------li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalD-V~~~E  302 (386)
                      ||+|++|+|......+           +.  .++....+++|+++|+.|+..+-..+.+.+.+.+....+.... ++.+|
T Consensus        83 aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe  162 (467)
T 2q3e_A           83 ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPE  162 (467)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCC
T ss_pred             CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHH
Confidence            9999999985443222           11  2345667899999999999888778888888887542221122 34555


Q ss_pred             CCCCC----CCCCCCCeEE
Q 016620          303 PYMKP----GLSEMKNAIV  317 (386)
Q Consensus       303 P~~~~----~L~~~~nvil  317 (386)
                      +....    .+...+++++
T Consensus       163 ~~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          163 FLAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCCTTSHHHHHHSCSCEEE
T ss_pred             HhhcccchhhccCCCEEEE
Confidence            54322    2345556654

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.72  E-value=2.3e-08  Score=93.31  Aligned_cols=103  Identities=12%  Similarity=0.091  Sum_probs=75.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|||||+|.||+.+|+.|+ ..|.+|++||+... ...+.        +...+.     .  .++++++.+||+|++|+
T Consensus         1 M~I~iIG~G~mG~~la~~l~-~~g~~V~~~~~~~~~~~~~~--------~~~~g~-----~--~~~~~~~~~aDvvi~~v   64 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLR-SRGVEVVTSLEGRSPSTIER--------ARTVGV-----T--ETSEEDVYSCPVVISAV   64 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHH-HTTCEEEECCTTCCHHHHHH--------HHHHTC-----E--ECCHHHHHTSSEEEECS
T ss_pred             CeEEEEechHHHHHHHHHHH-HCCCeEEEeCCccCHHHHHH--------HHHCCC-----c--CCHHHHHhcCCEEEEEC
Confidence            47999999999999999984 67899999988321 11111        111121     1  46788899999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      |.......+  .+....+++  ++|+++.+...+.+.|.+.+.+
T Consensus        65 ~~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~  104 (264)
T 1i36_A           65 TPGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEK  104 (264)
T ss_dssp             CGGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSS
T ss_pred             CCHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhh
Confidence            976554543  456677776  9999998887777888888765

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.15  E-value=1.8e-09  Score=97.60  Aligned_cols=94  Identities=20%  Similarity=0.214  Sum_probs=71.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      +.+++|||||+|.||+.+|+.| ...|.+|++|||+...  +.        +...     +.. ..+++++++.+|+|++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~~--~~--------~~~~-----g~~-~~~~~~~~~~aDvVil   79 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKM-LQCGYSVVFGSRNPQV--SS--------LLPR-----GAE-VLCYSEAASRSDVIVL   79 (201)
Confidence            7788999999999999999998 5789999999987541  11        0011     111 2367788999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v  277 (386)
                      ++|.. .+..++  + +..+++++++||+++|-..
T Consensus        80 av~~~-~~~~v~--~-l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           80 AVHRE-HYDFLA--E-LADSLKGRVLIDVSNNQKM  110 (201)
Confidence            99964 566665  2 4557789999999999753

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.69  E-value=1.8e-08  Score=101.59  Aligned_cols=124  Identities=20%  Similarity=0.221  Sum_probs=80.1

Q ss_pred             cccCC-CeEEEEecChhHHHHHHHHHhcC------CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 016620          161 NLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (386)
Q Consensus       161 ~~l~g-~~vgIvG~G~IG~~iA~~L~~~f------g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (386)
                      ..++| ++|||||+|+||.++|+.|+ ..      |++|++.++......+.        ....+.... .....+++|+
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nLr-~s~~~~g~G~~ViVg~r~~sks~e~--------A~e~G~~v~-d~ta~s~aEA  118 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKIGLRKGSKSFDE--------ARAAGFTEE-SGTLGDIWET  118 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHHH-HHHHHTTCCCEEEEEECTTCSCHHH--------HHHTTCCTT-TTCEEEHHHH
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHHH-hcccccCCCCEEEEEeCCchhhHHH--------HHHCCCEEe-cCCCCCHHHH
Confidence            56899 99999999999999999984 44      99988665543221111        111222110 0012478999


Q ss_pred             hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc-CCcceEEeeccCCCC
Q 016620          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ-NPMFRVGLDVFEDEP  303 (386)
Q Consensus       234 l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~-g~i~gaalDV~~~EP  303 (386)
                      +++||+|++++|.... ..++. +.+..||+|++ |-.+.|-.      +..+++ +.......||+---|
T Consensus       119 a~~ADVVILaVP~~~~-~eVl~-eI~p~LK~GaI-Ls~AaGf~------I~~le~~~i~~p~dv~VVrVmP  180 (525)
T 3fr7_A          119 VSGSDLVLLLISDAAQ-ADNYE-KIFSHMKPNSI-LGLSHGFL------LGHLQSAGLDFPKNISVIAVCP  180 (525)
T ss_dssp             HHHCSEEEECSCHHHH-HHHHH-HHHHHSCTTCE-EEESSSHH------HHHHHHTTCCCCTTSEEEEEEE
T ss_pred             HhcCCEEEECCChHHH-HHHHH-HHHHhcCCCCe-EEEeCCCC------HHHHhhhcccCCCCCcEEEEec
Confidence            9999999999997554 34665 78899999998 56667743      334443 222233356665444

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.69  E-value=2.2e-08  Score=93.69  Aligned_cols=103  Identities=13%  Similarity=0.171  Sum_probs=74.1

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      .+++.+++|||||+|.||+.+|+.|+ ..|.+ |.+||++..... ...+       ..+     .....+++++++++|
T Consensus         5 ~~~~~~m~i~iiG~G~mG~~~a~~l~-~~g~~~v~~~~~~~~~~~-~~~~-------~~g-----~~~~~~~~~~~~~~D   70 (266)
T 3d1l_A            5 KRSIEDTPIVLIGAGNLATNLAKALY-RKGFRIVQVYSRTEESAR-ELAQ-------KVE-----AEYTTDLAEVNPYAK   70 (266)
T ss_dssp             --CGGGCCEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSHHHHH-HHHH-------HTT-----CEEESCGGGSCSCCS
T ss_pred             hcCCCCCeEEEEcCCHHHHHHHHHHH-HCCCeEEEEEeCCHHHHH-HHHH-------HcC-----CceeCCHHHHhcCCC
Confidence            34567789999999999999999984 56888 899999865421 1111       101     122457888889999


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd  278 (386)
                      +|++|+|.. ....++ ++....+++++++|+++.|...+
T Consensus        71 vvi~av~~~-~~~~v~-~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           71 LYIVSLKDS-AFAELL-QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             EEEECCCHH-HHHHHH-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             EEEEecCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCchH
Confidence            999999964 334444 45556788999999999987654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.64  E-value=6.9e-07  Score=87.67  Aligned_cols=223  Identities=17%  Similarity=0.196  Sum_probs=125.7

Q ss_pred             HHHHHHhCCCeEEEecCCC--CCCCHHHHHH-----------HhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           29 WINLLIEQDCRVEICTQKK--TILSVEDIIA-----------LIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~--~~~~~~e~~~-----------~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      ..+.|.+.|+++.+-....  ..++.++..+           .+  ++|.|+. ..++...+..  +.+.|...+.....
T Consensus        22 ~v~~l~~~g~~v~ve~~ag~~~~f~d~~y~~aga~i~~~~~~~~--~ad~i~~-vksP~~~~~~--~~~~g~~~~~y~~~   96 (361)
T 1pjc_A           22 SVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW--SREMVVK-VKEPLPAEYD--LMQKDQLLFTYLHL   96 (361)
T ss_dssp             HHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH--TSSEEEC-SSCCCGGGGG--GCCTTCEEEECCCG
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEECCHHHHh--cCCeEEE-ECCCCHHHHH--hhcCCCEEEEEecc
Confidence            3577777888876633332  2334444432           11  4787664 3344333321  22233345555555


Q ss_pred             cccccChhHHhhCCcEEecC---CCC-----CchhHHHHHH--HHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCC
Q 016620           96 GYNNVDVNAANKYGIAVGNT---PGV-----LTETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (386)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~---~~~-----~~~~vAE~al--~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g  165 (386)
                      ..+.-.++.+.+.|+...|.   |.-     .-.++++.+-  +.+++... +...    ..|.  +..-. .. ..+.+
T Consensus        97 ~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~n-t~~~----~~g~--G~~l~-~l-~~l~~  167 (361)
T 1pjc_A           97 AAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARF-LERQ----QGGR--GVLLG-GV-PGVKP  167 (361)
T ss_dssp             GGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHH-TSGG----GTSC--CCCTT-CB-TTBCC
T ss_pred             ccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHH-Hhhc----cCCC--ceecc-CC-CCCCC
Confidence            55544566778889888753   431     1234444443  33443322 2110    1111  00000 01 24778


Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|+|+|.|.+|+.+++.+ +.+|++|+++|++..... ...+.+.    .  ..........++.+.+..+|+|+.+++
T Consensus       168 ~~VlViGaGgvG~~aa~~a-~~~Ga~V~v~dr~~~r~~-~~~~~~~----~--~~~~~~~~~~~~~~~~~~~DvVI~~~~  239 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMA-VGLGAQVQIFDINVERLS-YLETLFG----S--RVELLYSNSAEIETAVAEADLLIGAVL  239 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHH-HHHHHHG----G--GSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHHH-HHHHhhC----c--eeEeeeCCHHHHHHHHcCCCEEEECCC
Confidence            9999999999999999996 799999999999875421 1111100    0  000000011246677889999999997


Q ss_pred             CCh-hhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          246 LDK-TTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       246 lt~-~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ... .+..++.++.++.|++|.+++|++-
T Consensus       240 ~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          240 VPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             cCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence            533 2345668889999999999999974

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.63  E-value=9.7e-08  Score=80.99  Aligned_cols=93  Identities=13%  Similarity=0.250  Sum_probs=69.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      |++|+|+|.|.||+.+++.| ...|++|.++|++.... +.+.+.+       +   .......++++++.++|+|++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l-~~~g~~v~v~~r~~~~~-~~~a~~~-------~---~~~~~~~~~~~~~~~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYF-SYPQYKVTVAGRNIDHV-RAFAEKY-------E---YEYVLINDIDSLIKNNDVIITAT   88 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGC-CTTTCEEEEEESCHHHH-HHHHHHH-------T---CEEEECSCHHHHHHTCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCHHHH-HHHHHHh-------C---CceEeecCHHHHhcCCCEEEEeC
Confidence            88999999999999999987 57899999999987542 2222211       1   11223568899999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |..   ..++..   ..+++|.+++|++...
T Consensus        89 ~~~---~~~~~~---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           89 SSK---TPIVEE---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             CCS---SCSBCG---GGCCTTCEEEECCSSC
T ss_pred             CCC---CcEeeH---HHcCCCCEEEEccCCc
Confidence            964   334444   4568899999998753

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.61  E-value=9.7e-07  Score=84.15  Aligned_cols=154  Identities=16%  Similarity=0.140  Sum_probs=89.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCCc-------------cccccCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQPV-------------TWKRASS  229 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~~-------------~~~~~~~  229 (386)
                      ++|+|||+|.||..+|..|+ ..|.+|++||++.......  ... .+. .+...+....             ......+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~~~~~i~~~l~-~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~   93 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAKSKKGIEESLR-KVAKKKFAENPKAGDEFVEKTLSTIATSTD   93 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHHH-HHHHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHH-HHHHcCCCCccccchhhHHHHHhceEEecC
Confidence            68999999999999999985 5699999999986542211  000 000 0011111100             1223468


Q ss_pred             HHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCC
Q 016620          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGL  309 (386)
Q Consensus       230 l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L  309 (386)
                      +++.+++||+|++++|.+.+...-+-++....++++++++..+.|-  ....+.+.+... -..++.+.+.  |.     
T Consensus        94 ~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~-~~~~g~h~~~--P~-----  163 (302)
T 1f0y_A           94 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQ-DRFAGLHFFN--PV-----  163 (302)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCG-GGEEEEEECS--ST-----
T ss_pred             HHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCc-ccEEEEecCC--Cc-----
Confidence            8888999999999999765544444455556788999988554443  334555544321 1244555443  22     


Q ss_pred             CCCCCeEEcCCCCCCcHHHHHHH
Q 016620          310 SEMKNAIVVPHIASASKWTREGM  332 (386)
Q Consensus       310 ~~~~nvilTPHia~~t~~~~~~~  332 (386)
                      ...+.+.+.++-. .+.+..+.+
T Consensus       164 ~~~~~~~i~~g~~-~~~e~~~~~  185 (302)
T 1f0y_A          164 PVMKLVEVIKTPM-TSQKTFESL  185 (302)
T ss_dssp             TTCCEEEEECCTT-CCHHHHHHH
T ss_pred             ccCceEEEeCCCC-CCHHHHHHH
Confidence            2344555666432 344444444

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.57  E-value=2.9e-07  Score=92.36  Aligned_cols=124  Identities=16%  Similarity=0.230  Sum_probs=82.6

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh--------hhhhhhhcCCCCccccccCCH
Q 016620          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      ++++..-++|+|||+|.||..+|..|+ . |.+|++||++..... .....        ..+.+.. .  ..+.....++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La-~-G~~V~~~D~~~~~v~-~l~~g~~~i~e~~l~~ll~~-~--~~~l~~ttd~  103 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIA-Q-NHEVVALDIVQAKVD-MLNQKISPIVDKEIQEYLAE-K--PLNFRATTDK  103 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCHHHHH-HHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHH-c-CCeEEEEecCHHHhh-HHhccCCccccccHHHHHhh-c--cCCeEEEcCH
Confidence            456777789999999999999999985 4 999999999876422 11100        0000000 0  0112334688


Q ss_pred             HHHhhhCCEEEEccCCChh-------hhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          231 DEVLREADVISLHPVLDKT-------TYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       231 ~ell~~aDiVvl~lPlt~~-------t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      ++.+++||+|++|+|...+       +..+.  -+.... +++|+++|+.|+..+--.+.+.+.+.+.
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~  170 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID  170 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc
Confidence            9999999999999996521       11221  244566 9999999999998887788888888654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.55  E-value=7.4e-07  Score=90.82  Aligned_cols=154  Identities=20%  Similarity=0.263  Sum_probs=93.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcCCCCc--------cccccCCHHHH
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQPV--------TWKRASSMDEV  233 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~--------~~~~~~~l~el  233 (386)
                      -++|||||+|.||..||..++ ..|.+|++||++....... .+.....+.   ..+....        +.....+++ .
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~l~~~-~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~   81 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAA-SHGHQVLLYDISAEALTRA-IDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-A   81 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHH-HHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-G
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCeEEEEECCHHHHHHH-HHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-H
Confidence            358999999999999999985 6799999999987643221 110000011   1111100        112235664 5


Q ss_pred             hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCC
Q 016620          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEM  312 (386)
Q Consensus       234 l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gail-IN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~  312 (386)
                      +++||+|+.++|.+.+.+.-+-++..+.++++++| +|+|.-.   ...|.+.+.. .-..+++..|.+-|.       +
T Consensus        82 ~~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~---i~~ia~~~~~-p~~~ig~hf~~Pa~v-------~  150 (483)
T 3mog_A           82 LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSIS---ITAIAAEIKN-PERVAGLHFFNPAPV-------M  150 (483)
T ss_dssp             GGGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSC---HHHHTTTSSS-GGGEEEEEECSSTTT-------C
T ss_pred             hcCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCC---HHHHHHHccC-ccceEEeeecChhhh-------C
Confidence            89999999999987666544446677789999999 5776644   3455555542 335667776664332       2


Q ss_pred             CCeEEcCCCCCCcHHHHHHHH
Q 016620          313 KNAIVVPHIASASKWTREGMA  333 (386)
Q Consensus       313 ~nvilTPHia~~t~~~~~~~~  333 (386)
                      +-+.+.|+- ..+.++.+.+.
T Consensus       151 ~Lvevv~g~-~Ts~e~~~~~~  170 (483)
T 3mog_A          151 KLVEVVSGL-ATAAEVVEQLC  170 (483)
T ss_dssp             CEEEEEECS-SCCHHHHHHHH
T ss_pred             CeEEEecCC-CCCHHHHHHHH
Confidence            445666642 23445444443

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.55  E-value=9.5e-08  Score=86.90  Aligned_cols=95  Identities=17%  Similarity=0.220  Sum_probs=67.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+++|+|||+|.||+.+|+.| ...|.+|.++||+.... +.        +...+     ... .+++++++++|+|++|
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l-~~~g~~V~~~~r~~~~~-~~--------~~~~g-----~~~-~~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRL-VGSGFKVVVGSRNPKRT-AR--------LFPSA-----AQV-TFQEEAVSSPEVIFVA   90 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHH-HHTTCCEEEEESSHHHH-HH--------HSBTT-----SEE-EEHHHHTTSCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHcC-----Cce-ecHHHHHhCCCEEEEC
Confidence            457899999999999999998 46789999999986542 11        11111     111 2788899999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd  278 (386)
                      +|. .....++.   +..+.+++++|++++|-..+
T Consensus        91 v~~-~~~~~v~~---l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A           91 VFR-EHYSSLCS---LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             SCG-GGSGGGGG---GHHHHTTCEEEECCCCCHHH
T ss_pred             CCh-HHHHHHHH---HHHhcCCCEEEEeCCCcccc
Confidence            994 34455553   33333799999999987543

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.54  E-value=2.6e-07  Score=88.91  Aligned_cols=97  Identities=19%  Similarity=0.207  Sum_probs=71.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ..+++|||||+|.||+.+++.|++.+|. +|.+|||+.... +++.+.       .+.   ......+++++++++|+|+
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~-~~l~~~-------~~~---~~~~~~~~~e~v~~aDiVi  201 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENA-EKFADT-------VQG---EVRVCSSVQEAVAGADVII  201 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHH-HHHHHH-------SSS---CCEECSSHHHHHTTCSEEE
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHH-------hhC---CeEEeCCHHHHHhcCCEEE
Confidence            4567899999999999999988655677 899999987542 222111       110   1223568999999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      +|+|.   +..++..   ..+++|.++++++....
T Consensus       202 ~atp~---~~~v~~~---~~l~~g~~vi~~g~~~p  230 (312)
T 2i99_A          202 TVTLA---TEPILFG---EWVKPGAHINAVGASRP  230 (312)
T ss_dssp             ECCCC---SSCCBCG---GGSCTTCEEEECCCCST
T ss_pred             EEeCC---CCcccCH---HHcCCCcEEEeCCCCCC
Confidence            99994   3556655   56899999999987655

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.51  E-value=8.9e-08  Score=86.77  Aligned_cols=80  Identities=15%  Similarity=0.228  Sum_probs=60.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .++.+++|+|||+|.||+.+|+.| ...|.+|++||++..                                .+++||+|
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l-~~~g~~V~~~~~~~~--------------------------------~~~~aD~v   61 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNF-EIAGHEVTYYGSKDQ--------------------------------ATTLGEIV   61 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHH-HHTTCEEEEECTTCC--------------------------------CSSCCSEE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHH--------------------------------HhccCCEE
Confidence            368889999999999999999998 478999999987421                                35789999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      ++|+| ...+..++. +....++ ++++|++++|--
T Consensus        62 i~av~-~~~~~~v~~-~l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           62 IMAVP-YPALAALAK-QYATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             EECSC-HHHHHHHHH-HTHHHHT-TSEEEECCCCBC
T ss_pred             EEcCC-cHHHHHHHH-HHHHhcC-CCEEEEECCCCC
Confidence            99999 556666653 3445567 999999999754

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.50  E-value=1.8e-07  Score=88.57  Aligned_cols=92  Identities=20%  Similarity=0.287  Sum_probs=68.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||+ |.||+.+|+.| ...|.+|++||++..... .        +...+.      ...++.+++++||+|++|+
T Consensus        12 m~I~iIG~tG~mG~~la~~l-~~~g~~V~~~~r~~~~~~-~--------~~~~g~------~~~~~~~~~~~aDvVi~av   75 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKI-HDSAHHLAAIEIAPEGRD-R--------LQGMGI------PLTDGDGWIDEADVVVLAL   75 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHSSSEEEEECCSHHHHH-H--------HHHTTC------CCCCSSGGGGTCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCHHHHH-H--------HHhcCC------CcCCHHHHhcCCCEEEEcC
Confidence            58999999 99999999998 477899999999865421 1        111121      1135677889999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |... +..++ ++....+++++++|+++.|.
T Consensus        76 ~~~~-~~~v~-~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           76 PDNI-IEKVA-EDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             CHHH-HHHHH-HHHGGGSCTTCEEEESCSHH
T ss_pred             CchH-HHHHH-HHHHHhCCCCCEEEECCCCc
Confidence            9533 45554 45666789999999998876

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.50  E-value=6.8e-07  Score=89.89  Aligned_cols=119  Identities=10%  Similarity=0.086  Sum_probs=78.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh----h----hhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----Y----GQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~----~----~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      ++|+|||+|.||..+|..|+ ..|.+|++||++..... .....    +    .+.+......+ ......++++.++.|
T Consensus         1 mkI~VIG~G~vG~~~A~~la-~~G~~V~~~d~~~~~~~-~l~~~~~~i~e~~l~~~~~~~~~~g-~l~~t~~~~~~~~~a   77 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTKID-LINQGKSPIVEPGLEALLQQGRQTG-RLSGTTDFKKAVLDS   77 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHHH-HHHTTCCSSCCTTHHHHHHHHHHTT-CEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEECCHHHHH-HHhCCCCCcCCCCHHHHHHhhcccC-ceEEeCCHHHHhccC
Confidence            47999999999999999985 67899999999865421 11100    0    00000000000 122346888889999


Q ss_pred             CEEEEccCCChh---------hhhcccHHHHhcCCC---CcEEEEcCCCcccC-HHHHHHHHHc
Q 016620          238 DVISLHPVLDKT---------TYHLINKERLATMKK---EAILVNCSRGPVID-EVALVEHLKQ  288 (386)
Q Consensus       238 DiVvl~lPlt~~---------t~~li~~~~~~~mk~---gailIN~aRg~~vd-e~aL~~aL~~  288 (386)
                      |+|++|+|...+         ....+ ++....+++   ++++|+.|...+-. .+.+.+.+.+
T Consensus        78 DvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           78 DVSFICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999999996543         33332 445556788   99999998766655 5667777765

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.49  E-value=3e-07  Score=85.14  Aligned_cols=105  Identities=23%  Similarity=0.334  Sum_probs=72.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc----EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ++|||||+|.||+.+|+.|+ ..|.    +|++|||+.... +...+.       .+     .....++++++++||+|+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~-~~g~~~~~~V~~~~r~~~~~-~~~~~~-------~g-----~~~~~~~~e~~~~aDvVi   68 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMI-NKNIVSSNQIICSDLNTANL-KNASEK-------YG-----LTTTTDNNEVAKNADILI   68 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HTTSSCGGGEEEECSCHHHH-HHHHHH-------HC-----CEECSCHHHHHHHCSEEE
T ss_pred             CeEEEECccHHHHHHHHHHH-hCCCCCCCeEEEEeCCHHHH-HHHHHH-------hC-----CEEeCChHHHHHhCCEEE
Confidence            58999999999999999984 6787    999999987542 211111       11     223468899999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +|+|. .....++ ++....++++.++|.+.-|-  ..+.|.+.+..
T Consensus        69 lav~~-~~~~~v~-~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           69 LSIKP-DLYASII-NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ECSCT-TTHHHHC----CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             EEeCH-HHHHHHH-HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            99974 3344444 45556688999998765543  34566666643

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.48  E-value=7e-07  Score=86.14  Aligned_cols=108  Identities=20%  Similarity=0.296  Sum_probs=75.4

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChh-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      ...++|||||+|.||..+|+.|+ ..|    .+|++|||+.. ...+.        +...+     .....+..++++.|
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~-~~G~~~~~~V~v~~r~~~~~~~~~--------l~~~G-----~~~~~~~~e~~~~a   85 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFT-AAGVLAAHKIMASSPDMDLATVSA--------LRKMG-----VKLTPHNKETVQHS   85 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHH-HTTSSCGGGEEEECSCTTSHHHHH--------HHHHT-----CEEESCHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHH-HCCCCCcceEEEECCCccHHHHHH--------HHHcC-----CEEeCChHHHhccC
Confidence            44568999999999999999984 566    78999999864 12221        11112     22235788899999


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      |+|++|+| ......++ .+....++++.++|+++-|--  .+.|.+.+.+
T Consensus        86 DvVilav~-~~~~~~vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A           86 DVLFLAVK-PHIIPFIL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             SEEEECSC-GGGHHHHH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             CEEEEEeC-HHHHHHHH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            99999999 34555554 345567889999999977643  4556666664

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.43  E-value=7.3e-07  Score=82.83  Aligned_cols=102  Identities=16%  Similarity=0.222  Sum_probs=72.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+.+++.| ...|.+|.+||++.... +...+.+       +     .....+++++++++|+|++|+|
T Consensus         4 m~i~iiG~G~mG~~~a~~l-~~~g~~v~~~~~~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL-------A-----LPYAMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH-------T-----CCBCSSHHHHHHTCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHHc-------C-----CEeeCCHHHHHhcCCEEEEEeC
Confidence            4899999999999999998 56788999999986542 2111111       2     1124678899999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                       ....     .+.+..+++|.++|+...|--  .+.+.+.+..+
T Consensus        70 -~~~~-----~~v~~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           70 -PQLF-----ETVLKPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             -GGGH-----HHHHTTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             -cHhH-----HHHHHHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence             3333     344555778999999976543  34566666543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.41  E-value=1.5e-06  Score=87.71  Aligned_cols=119  Identities=14%  Similarity=0.160  Sum_probs=78.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhh--------hhhhhcCCCCccccccCCHHHHhhhC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      ++|+|||+|.||..+|..|+ ..|.+|++||++..... .......        +.+... ..........++++++++|
T Consensus         3 mkI~VIG~G~vG~~lA~~La-~~G~~V~~~D~~~~~v~-~l~~g~~~i~e~gl~~~l~~~-~~~~~l~~t~d~~ea~~~a   79 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFA-ELGANVRCIDTDRNKIE-QLNSGTIPIYEPGLEKMIARN-VKAGRLRFGTEIEQAVPEA   79 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHH-HHHHTCSCCCSTTHHHHHHHH-HHTTSEEEESCHHHHGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHH-hcCCEEEEEECCHHHHH-HHHcCCCcccCCCHHHHHHhh-cccCcEEEECCHHHHHhcC
Confidence            58999999999999999985 67899999999875421 1111000        000000 0001122346889999999


Q ss_pred             CEEEEccCCCh---------hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          238 DVISLHPVLDK---------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       238 DiVvl~lPlt~---------~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      |+|++|+|...         .....+ ++....+++|.++|+.|.-.+-..+.+.+.+++
T Consensus        80 DvViiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           80 DIIFIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99999998653         223332 456677899999999997655555666666654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.35  E-value=6.7e-07  Score=84.64  Aligned_cols=106  Identities=10%  Similarity=0.072  Sum_probs=74.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .++|||||+|+||+.+|+.|+ ..|.   +|++|||+..... ...        ..    .+.....+..+++++||+|+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~-~~g~~~~~V~v~dr~~~~~~-~l~--------~~----~gi~~~~~~~~~~~~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLI-ANGYDPNRICVTNRSLDKLD-FFK--------EK----CGVHTTQDNRQGALNADVVV   68 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHH-HTTCCGGGEEEECSSSHHHH-HHH--------HT----TCCEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEEcccHHHHHHHHHHH-HCCCCCCeEEEEeCCHHHHH-HHH--------HH----cCCEEeCChHHHHhcCCeEE
Confidence            468999999999999999984 5666   8999999876422 111        11    01223468889999999999


Q ss_pred             EccCCChhhhhcccHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          242 LHPVLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~-mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +++|. .....++ ++.-.. ++++.++|+++-|-  ..+.|.+.+..
T Consensus        69 lav~p-~~~~~vl-~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           69 LAVKP-HQIKMVC-EELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             ECSCG-GGHHHHH-HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             EEeCH-HHHHHHH-HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            99984 3334444 344444 68888999877654  35677777764

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.34  E-value=1.8e-06  Score=87.04  Aligned_cols=111  Identities=14%  Similarity=0.177  Sum_probs=79.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC----------------CccccccCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ----------------PVTWKRASS  229 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~  229 (386)
                      -+++|||+|.+|..+|..|+ ..|.+|++||++..... .        +.. +..                +.......+
T Consensus         9 ~~~~vIGlG~vG~~~A~~La-~~G~~V~~~D~~~~kv~-~--------l~~-g~~~~~epgl~~~~~~~~~~g~l~~ttd   77 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFS-DFGHEVVCVDKDARKIE-L--------LHQ-NVMPIYEPGLDALVASNVKAGRLSFTTD   77 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCSTTHH-H--------HTT-TCCSSCCTTHHHHHHHHHHTTCEEEESC
T ss_pred             eEEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCHHHHH-H--------Hhc-CCCCccCCCHHHHHHhhcccCCEEEECC
Confidence            46999999999999999985 67999999999876421 1        111 110                011223468


Q ss_pred             HHHHhhhCCEEEEccCCChh----------hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          230 MDEVLREADVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       230 l~ell~~aDiVvl~lPlt~~----------t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +++.+++||+|++|+|...+          .+..+ +.....+++|.++|+.|.-.+--.+.+.+.+.+
T Consensus        78 ~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e  145 (446)
T 4a7p_A           78 LAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE  145 (446)
T ss_dssp             HHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred             HHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence            88999999999999885432          22222 566778999999999997666566777777765

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.33  E-value=1.4e-06  Score=82.35  Aligned_cols=169  Identities=16%  Similarity=0.165  Sum_probs=106.7

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHHHHH-HhhccCCcEEEEccccccccChhH
Q 016620           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETLFA-ALSRAGGKAFSNMAVGYNNVDVNA  104 (386)
Q Consensus        33 l~~~~~~~~~~~~~~~~~~~~e~~~~~~-----~~ad~vi~~~~--~~~~~~~l~-~l~~l~~k~i~~~~~G~d~id~~~  104 (386)
                      -++.|.+.+....++ ..+++|+.+.+.     +..+++++..+  ..+++..+- ...-.  |=+    -|+..+++-.
T Consensus        58 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--KDV----DG~~p~n~g~  130 (288)
T 1b0a_A           58 CEEVGFVSRSYDLPE-TTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIHPD--KDV----DGFHPYNVGR  130 (288)
T ss_dssp             HHHHTCEECCEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSCTT--TCT----TCCSHHHHHH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccCCc--cCc----ccCCccchhH
Confidence            455677665444433 347788765552     24799999764  455554432 22111  211    1222222222


Q ss_pred             HhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 016620          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (386)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA~~  183 (386)
                      +.      .+.++ +...+++-++-    ++++                     .+.+++|+++.|||.|. +|+.+|+.
T Consensus       131 l~------~g~~~-~~PcTp~gi~~----ll~~---------------------~~i~l~gk~vvVIG~s~iVG~p~A~l  178 (288)
T 1b0a_A          131 LC------QRAPR-LRPCTPRGIVT----LLER---------------------YNIDTFGLNAVVIGASNIVGRPMSME  178 (288)
T ss_dssp             HH------TTCCS-SCCHHHHHHHH----HHHH---------------------TTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             Hh------CCCCC-CCCCcHHHHHH----HHHH---------------------cCCCCCCCEEEEECCChHHHHHHHHH
Confidence            22      12233 44556655332    2221                     12479999999999997 59999999


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCC
Q 016620          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (386)
Q Consensus       184 L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk  263 (386)
                      | ...|++|+.++++.                            .++.+.+++||+|+.+++.    .++|..+.   +|
T Consensus       179 L-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Avg~----p~lI~~~~---vk  222 (288)
T 1b0a_A          179 L-LLAGCTTTVTHRFT----------------------------KNLRHHVENADLLIVAVGK----PGFIPGDW---IK  222 (288)
T ss_dssp             H-HTTTCEEEEECSSC----------------------------SCHHHHHHHCSEEEECSCC----TTCBCTTT---SC
T ss_pred             H-HHCCCeEEEEeCCc----------------------------hhHHHHhccCCEEEECCCC----cCcCCHHH---cC
Confidence            7 68999999987532                            4788999999999999984    34677765   48


Q ss_pred             CCcEEEEcCCCcc
Q 016620          264 KEAILVNCSRGPV  276 (386)
Q Consensus       264 ~gailIN~aRg~~  276 (386)
                      +|+++||+|.-.+
T Consensus       223 ~GavVIDVgi~r~  235 (288)
T 1b0a_A          223 EGAIVIDVGINRL  235 (288)
T ss_dssp             TTCEEEECCCEEC
T ss_pred             CCcEEEEccCCcc
Confidence            9999999998654

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.32  E-value=8.4e-06  Score=82.60  Aligned_cols=131  Identities=16%  Similarity=0.163  Sum_probs=78.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHH--Hh-hhhhh-----hhhcCCCCccccccCCHHHHhhh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQF-----LKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~--~~-~~~~~-----~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      -++|+|||+|.||..+|..|+ ..|.+|++||++........  .. .+...     ...............++ +.+++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la-~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~  114 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELST  114 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTT
T ss_pred             CCEEEEECcCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCC
Confidence            468999999999999999985 67999999999875422110  00 00000     00000001111113466 46789


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      ||+|+.++|.+.+...-+-++....++++++++..+.+-  ....|.+.+.. .-..++++.|.
T Consensus       115 aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~--~~~~la~~~~~-~~~~ig~hf~~  175 (463)
T 1zcj_A          115 VDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDR-PQLVIGTHFFS  175 (463)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEEECS
T ss_pred             CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCc--CHHHHHHHhcC-CcceEEeecCC
Confidence            999999999765444434455667789999998743332  33466655532 22345666663

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.31  E-value=2.3e-06  Score=80.86  Aligned_cols=171  Identities=19%  Similarity=0.218  Sum_probs=107.7

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc----C-CCcEEEecCC--ccccHHHH-HHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG----D-KCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~----~-~ad~vi~~~~--~~~~~~~l-~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+.+....++ ..+++|+.+.+.    + ..+++++..+  ..+++..+ +.....  |-+    -|+..+++
T Consensus        58 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--KDV----DG~~~~N~  130 (286)
T 4a5o_A           58 KDCEEVGFLSQAYDLPA-ETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHPD--KDV----DGFHPYNI  130 (286)
T ss_dssp             HHHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCGG--GCT----TCCSHHHH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCcc--ccc----ccCChhhh
Confidence            34566788876655543 347787775542    2 4789998764  45555433 333111  111    12222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA  181 (386)
                      -.+.. |     .++ +...++.-++-    ++++                     .+.+++|+++.|||.|. +|+.+|
T Consensus       131 g~l~~-g-----~~~-~~PcTp~gv~~----lL~~---------------------~~i~l~Gk~vvVvGrs~iVG~plA  178 (286)
T 4a5o_A          131 GRLAQ-R-----MPL-LRPCTPKGIMT----LLAS---------------------TGADLYGMDAVVVGASNIVGRPMA  178 (286)
T ss_dssp             HHHHT-T-----CCS-SCCHHHHHHHH----HHHH---------------------TTCCCTTCEEEEECTTSTTHHHHH
T ss_pred             HHHhc-C-----CCC-CCCCCHHHHHH----HHHH---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence            22211 1     232 33445544432    2221                     12579999999999987 799999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      ..| ...|++|++++++.                            .++++.+++||+|+.+++.    .++|..+.   
T Consensus       179 ~lL-~~~gAtVtv~hs~T----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  222 (286)
T 4a5o_A          179 LEL-LLGGCTVTVTHRFT----------------------------RDLADHVSRADLVVVAAGK----PGLVKGEW---  222 (286)
T ss_dssp             HHH-HHTTCEEEEECTTC----------------------------SCHHHHHHTCSEEEECCCC----TTCBCGGG---
T ss_pred             HHH-HHCCCeEEEEeCCC----------------------------cCHHHHhccCCEEEECCCC----CCCCCHHH---
Confidence            997 68899999886521                            3788999999999999984    45677755   


Q ss_pred             CCCCcEEEEcCCCcc
Q 016620          262 MKKEAILVNCSRGPV  276 (386)
Q Consensus       262 mk~gailIN~aRg~~  276 (386)
                      +|+|+++||++.-.+
T Consensus       223 vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          223 IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             SCTTCEEEECCSCSS
T ss_pred             cCCCeEEEEeccccc
Confidence            499999999987554

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.31  E-value=4.4e-06  Score=89.04  Aligned_cols=156  Identities=17%  Similarity=0.141  Sum_probs=91.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHhhhhhhhhhcCCCC--------ccccccCCHHHHh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~~~~~~l~ell  234 (386)
                      =++|||||+|.||..||..++ ..|.+|++||++.......  .....-+.+...+...        .......++ +.+
T Consensus       314 i~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~  391 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDF  391 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred             CCEEEEECCChhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence            357999999999999999985 5699999999987543211  1100000011111110        011123455 668


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~n  314 (386)
                      ++||+|+.++|.+.+.+.-+-.+..+.++++++++..+.+  +....+.+.+.. .-..++++.|.  |.     ..++.
T Consensus       392 ~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-~~~~ig~hf~~--P~-----~~~~l  461 (715)
T 1wdk_A          392 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALKR-PENFVGMHFFN--PV-----HMMPL  461 (715)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCSC-GGGEEEEECCS--ST-----TTCCE
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhcC-ccceEEEEccC--Cc-----ccCce
Confidence            9999999999987766554556677789999999744333  233455554432 12346666665  32     23455


Q ss_pred             eEEcCCCCCCcHHHHHHHH
Q 016620          315 AIVVPHIASASKWTREGMA  333 (386)
Q Consensus       315 vilTPHia~~t~~~~~~~~  333 (386)
                      +.+.|+- ..+.++.+.+.
T Consensus       462 vevv~g~-~t~~e~~~~~~  479 (715)
T 1wdk_A          462 VEVIRGE-KSSDLAVATTV  479 (715)
T ss_dssp             EEEEECS-SCCHHHHHHHH
T ss_pred             EEEEECC-CCCHHHHHHHH
Confidence            6565542 23455555443

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.29  E-value=1.9e-06  Score=81.42  Aligned_cols=172  Identities=17%  Similarity=0.243  Sum_probs=108.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHHH-HHHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~-----~~ad~vi~~~~--~~~~~~~-l~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.+++++..+  ..+++.. ++.....  |-+    -|+..+++
T Consensus        56 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDV----Dg~~~~N~  128 (285)
T 3p2o_A           56 KACEECGIKSLVYHLNE-NITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--KDV----DGFHPINV  128 (285)
T ss_dssp             HHHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--GCT----TCCSHHHH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcc--ccc----ccCCHhhh
Confidence            33456687776655443 347788876552     25889998764  4455543 3333211  211    12222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA  181 (386)
                      -.+..      +.++.+...++.-++    .++++                     .+.+++|+++.|||.|. +|+.+|
T Consensus       129 g~l~~------g~~~g~~PcTp~gv~----~lL~~---------------------~~i~l~Gk~vvVvGrs~iVG~p~A  177 (285)
T 3p2o_A          129 GYLNL------GLESGFLPCTPLGVM----KLLKA---------------------YEIDLEGKDAVIIGASNIVGRPMA  177 (285)
T ss_dssp             HHHHT------TCCSSCCCHHHHHHH----HHHHH---------------------TTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             hhhhc------CCCCCCCCCCHHHHH----HHHHH---------------------hCCCCCCCEEEEECCCchHHHHHH
Confidence            22211      123313444554443    22221                     12579999999999988 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhc
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~  261 (386)
                      ..| ...|++|++++++.                            .++++.+++||+|+.+++.    .++|..+.   
T Consensus       178 ~lL-~~~gAtVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  221 (285)
T 3p2o_A          178 TML-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDM---  221 (285)
T ss_dssp             HHH-HHTTCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSSC----TTCBCGGG---
T ss_pred             HHH-HHCCCeEEEEeCCc----------------------------hhHHHHhhcCCEEEECCCC----CCcCCHHH---
Confidence            998 68899999987532                            4788999999999999984    45677754   


Q ss_pred             CCCCcEEEEcCCCcc
Q 016620          262 MKKEAILVNCSRGPV  276 (386)
Q Consensus       262 mk~gailIN~aRg~~  276 (386)
                      +|+|+++||++.-.+
T Consensus       222 vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          222 VKEGVIVVDVGINRL  236 (285)
T ss_dssp             SCTTEEEEECCCEEC
T ss_pred             cCCCeEEEEeccCcc
Confidence            599999999987554

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.29  E-value=3e-06  Score=83.03  Aligned_cols=110  Identities=14%  Similarity=0.123  Sum_probs=73.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh--hhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL--KANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .++|+|||.|.+|..+|..|+ ..|.+|.+|+++.... +..... ....  ......+.......++++.++.||+|++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La-~~G~~V~l~~r~~~~~-~~i~~~-~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVil  105 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLA-RKGQKVRLWSYESDHV-DEMQAE-GVNNRYLPNYPFPETLKAYCDLKASLEGVTDILI  105 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHH-TTTCCEEEECSCHHHH-HHHHHH-SSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEE
T ss_pred             CCeEEEECccHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHc-CCCcccCCCCccCCCeEEECCHHHHHhcCCEEEE
Confidence            468999999999999999984 6789999999976532 111100 0000  0000011112234688899999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde  279 (386)
                      ++|. ...+.++ ++....+++++++|+++.|-..++
T Consensus       106 aVp~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t  140 (356)
T 3k96_A          106 VVPS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGS  140 (356)
T ss_dssp             CCCH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTT
T ss_pred             CCCH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCc
Confidence            9994 2344443 456667889999999988765543

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.29  E-value=4e-06  Score=85.34  Aligned_cols=119  Identities=18%  Similarity=0.178  Sum_probs=77.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~-fg~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      ++|+|||+|.||..+|..|++. .|.+|++||++...... ....        ..+.+....  ........++++.++.
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~-l~~g~~~i~e~gl~~~~~~~~--~~~l~~t~~~~~~~~~   86 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAE-WNSDKLPIYEPGLDEIVFAAR--GRNLFFSSDIPKAIAE   86 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHH-HTSSSCSSCCTTHHHHHHHHB--TTTEEEESCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHH-HHCCCCCcCCCCHHHHHHHhh--cCCEEEECCHHHHhhc
Confidence            5899999999999999998653 37899999998654211 1000        000000000  0012234577788999


Q ss_pred             CCEEEEccCCChh--------------hhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          237 ADVISLHPVLDKT--------------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       237 aDiVvl~lPlt~~--------------t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      ||+|++|+|....              .... -+...+.+++|.++|+.|.-.+-..+.+.+.+.+
T Consensus        87 aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~-~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           87 ADLIFISVNTPTKMYGRGKGMAPDLKYVESV-SRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHH-HHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CCEEEEecCCccccccccccCCCcHHHHHHH-HHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999999885431              1222 2456677999999999887666556667777776

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.29  E-value=9.2e-07  Score=82.18  Aligned_cols=100  Identities=16%  Similarity=0.176  Sum_probs=67.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|||||+|.||+.+|+.|+ ..| .+|.+|||+..... ...+       ..+     .....++++++ ++|+|++|+
T Consensus         1 m~i~iiG~G~mG~~~a~~l~-~~g~~~v~~~~r~~~~~~-~~~~-------~~g-----~~~~~~~~~~~-~~D~vi~~v   65 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLV-KQGGYRIYIANRGAEKRE-RLEK-------ELG-----VETSATLPELH-SDDVLILAV   65 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHCSCEEEEECSSHHHHH-HHHH-------HTC-----CEEESSCCCCC-TTSEEEECS
T ss_pred             CEEEEECchHHHHHHHHHHH-HCCCCeEEEECCCHHHHH-HHHH-------hcC-----CEEeCCHHHHh-cCCEEEEEe
Confidence            47999999999999999984 567 89999999865421 1111       111     11234566777 999999999


Q ss_pred             CCChhhhhcccHHHHhcCC-CCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          245 VLDKTTYHLINKERLATMK-KEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk-~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      | ......++     ..++ ++.++|+++.|--  .+.|.+.+..
T Consensus        66 ~-~~~~~~v~-----~~l~~~~~ivv~~~~g~~--~~~l~~~~~~  102 (263)
T 1yqg_A           66 K-PQDMEAAC-----KNIRTNGALVLSVAAGLS--VGTLSRYLGG  102 (263)
T ss_dssp             C-HHHHHHHH-----TTCCCTTCEEEECCTTCC--HHHHHHHTTS
T ss_pred             C-chhHHHHH-----HHhccCCCEEEEecCCCC--HHHHHHHcCC
Confidence            9 44444443     3332 2899999865543  3667776655

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.28  E-value=2e-06  Score=80.88  Aligned_cols=77  Identities=9%  Similarity=0.186  Sum_probs=65.1

Q ss_pred             cCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ++|+++.|||.|. +|+.+|+.| .+.|++|++++++                            ..++++.+++||+|+
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL-~~~gAtVtv~~~~----------------------------t~~L~~~~~~ADIVI  198 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMML-LNRNYTVSVCHSK----------------------------TKDIGSMTRSSKIVV  198 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTT----------------------------CSCHHHHHHHSSEEE
T ss_pred             cCCCEEEEEcCChHHHHHHHHHH-HHCCCeEEEEeCC----------------------------cccHHHhhccCCEEE
Confidence            8999999999986 799999997 6889999998753                            247889999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      .+++.    .++|..+.   +|+|+++||++.-.
T Consensus       199 ~Avg~----p~~I~~~~---vk~GavVIDvgi~~  225 (276)
T 3ngx_A          199 VAVGR----PGFLNREM---VTPGSVVIDVGINY  225 (276)
T ss_dssp             ECSSC----TTCBCGGG---CCTTCEEEECCCEE
T ss_pred             ECCCC----CccccHhh---ccCCcEEEEeccCc
Confidence            99985    44677755   59999999998754

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.28  E-value=1e-06  Score=84.90  Aligned_cols=98  Identities=16%  Similarity=0.168  Sum_probs=69.8

Q ss_pred             cccccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc------c--CC
Q 016620          159 VGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR------A--SS  229 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~G~I-G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~  229 (386)
                      .|.++.|+++.|||.|.| |+.+|+.| .+.|++|+++||+......           ...........      .  .+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L-~~~gAtVtv~nR~~~~l~~-----------ra~~la~~~~~~t~~~~t~~~~  238 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFT-----------RGESLKLNKHHVEDLGEYSEDL  238 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEE-----------SCCCSSCCCCEEEEEEECCHHH
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHH-HHCCCEEEEEeCchHHHHh-----------HHHHHhhhcccccccccccHhH
Confidence            346799999999999976 99999998 6899999999987432100           00011110111      1  46


Q ss_pred             HHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       230 l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      +++.+.+||+|+.+++.   ..-+|..+.   +|+|+++||+|..
T Consensus       239 L~e~l~~ADIVIsAtg~---p~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          239 LKKCSLDSDVVITGVPS---ENYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             HHHHHHHCSEEEECCCC---TTCCBCTTT---SCTTEEEEECSSS
T ss_pred             HHHHhccCCEEEECCCC---CcceeCHHH---cCCCeEEEEcCCC
Confidence            88999999999999984   122376655   4899999999874

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.28  E-value=2.3e-06  Score=80.93  Aligned_cols=170  Identities=14%  Similarity=0.219  Sum_probs=107.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc----C-CCcEEEecCC--ccccHHHH-HHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG----D-KCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~----~-~ad~vi~~~~--~~~~~~~l-~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+.+....++ ..+++|+.+.+.    + +.+++++..+  ..+++..+ +.....  |-+    -|+..+++
T Consensus        57 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--KDV----DG~~~~N~  129 (285)
T 3l07_A           57 KACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--KDV----DGFHPTNV  129 (285)
T ss_dssp             HHHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--GBT----TCCSHHHH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcc--ccc----ccCChhhe
Confidence            33456687776655443 347788765552    2 4789998764  44555433 333211  211    12222222


Q ss_pred             hHHhhCCcEEecC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHH
Q 016620          103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (386)
Q Consensus       103 ~~~~~~gI~v~n~-~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~i  180 (386)
                      -.+..      +. ++ +...++.-++-    ++++                     .+.+++|+++.|||.|. +|+.+
T Consensus       130 G~l~~------g~~~~-~~PcTp~gv~~----lL~~---------------------~~i~l~Gk~vvVIG~s~iVG~p~  177 (285)
T 3l07_A          130 GRLQL------RDKKC-LESCTPKGIMT----MLRE---------------------YGIKTEGAYAVVVGASNVVGKPV  177 (285)
T ss_dssp             HHHHH------TCTTC-CCCHHHHHHHH----HHHH---------------------TTCCCTTCEEEEECCCTTTHHHH
T ss_pred             eehhc------CCCCC-CCCCCHHHHHH----HHHH---------------------hCCCCCCCEEEEECCCchhHHHH
Confidence            22211      11 23 33455544442    2221                     12479999999999998 69999


Q ss_pred             HHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (386)
Q Consensus       181 A~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~  260 (386)
                      |+.| ...|++|++++++                            ..++++.+++||+|+.+++.    .++|..+.  
T Consensus       178 A~lL-~~~gAtVtv~hs~----------------------------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~--  222 (285)
T 3l07_A          178 SQLL-LNAKATVTTCHRF----------------------------TTDLKSHTTKADILIVAVGK----PNFITADM--  222 (285)
T ss_dssp             HHHH-HHTTCEEEEECTT----------------------------CSSHHHHHTTCSEEEECCCC----TTCBCGGG--
T ss_pred             HHHH-HHCCCeEEEEeCC----------------------------chhHHHhcccCCEEEECCCC----CCCCCHHH--
Confidence            9997 6899999988653                            14788999999999999984    45677754  


Q ss_pred             cCCCCcEEEEcCCCc
Q 016620          261 TMKKEAILVNCSRGP  275 (386)
Q Consensus       261 ~mk~gailIN~aRg~  275 (386)
                       +|+|+++||++.-.
T Consensus       223 -vk~GavVIDvgi~~  236 (285)
T 3l07_A          223 -VKEGAVVIDVGINH  236 (285)
T ss_dssp             -SCTTCEEEECCCEE
T ss_pred             -cCCCcEEEEecccC
Confidence             59999999998755

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.28  E-value=2.4e-06  Score=80.54  Aligned_cols=170  Identities=17%  Similarity=0.176  Sum_probs=109.0

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhc-----CCCcEEEecCC--ccccHHHH-HHhhccCCcEEEEccccccccChh
Q 016620           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDVN  103 (386)
Q Consensus        32 ~l~~~~~~~~~~~~~~~~~~~~e~~~~~~-----~~ad~vi~~~~--~~~~~~~l-~~l~~l~~k~i~~~~~G~d~id~~  103 (386)
                      .-++.|.+.+....++ ..+++|+.+.+.     ++.+++++..+  ..+++..+ +...-.  |=+    -|+..+++-
T Consensus        56 ~~~~~Gi~~~~~~lp~-~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~--KDV----DG~~p~n~g  128 (281)
T 2c2x_A           56 DCAKVGITSIRRDLPA-DISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPA--KDA----DGLHPTNLG  128 (281)
T ss_dssp             HHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--GBT----TSCCHHHHH
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--CCc----cCCChhhHH
Confidence            3455688776655543 357888876552     14799998754  45555443 332211  211    122222222


Q ss_pred             HHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChh-HHHHHH
Q 016620          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYAR  182 (386)
Q Consensus       104 ~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~I-G~~iA~  182 (386)
                      .+..      +.++ +...+++-++-    ++++                     .+.+++|+++.|||.|.| |+.+|+
T Consensus       129 ~l~~------g~~~-~~PcTp~gi~~----ll~~---------------------~~i~l~gk~vvVvG~s~iVG~p~A~  176 (281)
T 2c2x_A          129 RLVL------GTPA-PLPCTPRGIVH----LLRR---------------------YDISIAGAHVVVIGRGVTVGRPLGL  176 (281)
T ss_dssp             HHHH------TCCC-CCCHHHHHHHH----HHHH---------------------TTCCCTTCEEEEECCCTTTHHHHHH
T ss_pred             HHhC------CCCC-CCCChHHHHHH----HHHH---------------------cCCCCCCCEEEEECCCcHHHHHHHH
Confidence            2221      2233 44556655332    2221                     124799999999999986 999999


Q ss_pred             HHHhcC--CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHh
Q 016620          183 MMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (386)
Q Consensus       183 ~L~~~f--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~  260 (386)
                      .| ...  |++|+.++++.                            .++.+.+++||+|+.+++.    .++|..+.  
T Consensus       177 lL-~~~g~~atVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~--  221 (281)
T 2c2x_A          177 LL-TRRSENATVTLCHTGT----------------------------RDLPALTRQADIVVAAVGV----AHLLTADM--  221 (281)
T ss_dssp             HH-TSTTTCCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSCC----TTCBCGGG--
T ss_pred             HH-hcCCCCCEEEEEECch----------------------------hHHHHHHhhCCEEEECCCC----CcccCHHH--
Confidence            97 577  89999886532                            4788999999999999984    34677766  


Q ss_pred             cCCCCcEEEEcCCCcc
Q 016620          261 TMKKEAILVNCSRGPV  276 (386)
Q Consensus       261 ~mk~gailIN~aRg~~  276 (386)
                       +|+|+++||+|.-.+
T Consensus       222 -vk~GavVIDVgi~r~  236 (281)
T 2c2x_A          222 -VRPGAAVIDVGVSRT  236 (281)
T ss_dssp             -SCTTCEEEECCEEEE
T ss_pred             -cCCCcEEEEccCCCC
Confidence             489999999998654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.26  E-value=2.8e-06  Score=80.85  Aligned_cols=80  Identities=16%  Similarity=0.303  Sum_probs=67.0

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .++.|+++.|||.|. +|+.+|+.| ...|++|++++++                            ..++++.+++||+
T Consensus       161 i~l~gk~vvVIG~s~iVG~p~A~lL-~~~gAtVtv~hs~----------------------------t~~L~~~~~~ADI  211 (301)
T 1a4i_A          161 VPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSK----------------------------TAHLDEEVNKGDI  211 (301)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTT----------------------------CSSHHHHHTTCSE
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHH-HhCCCeEEEEECC----------------------------cccHHHHhccCCE
Confidence            579999999999996 699999997 6899999998743                            2478899999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      |+.+++.    .++|..+.   +|+|+++||+|.-.+
T Consensus       212 VI~Avg~----p~~I~~~~---vk~GavVIDVgi~~~  241 (301)
T 1a4i_A          212 LVVATGQ----PEMVKGEW---IKPGAIVIDCGINYV  241 (301)
T ss_dssp             EEECCCC----TTCBCGGG---SCTTCEEEECCCBC-
T ss_pred             EEECCCC----cccCCHHH---cCCCcEEEEccCCCc
Confidence            9999985    44677766   579999999998654

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.26  E-value=4.4e-06  Score=83.11  Aligned_cols=110  Identities=15%  Similarity=0.205  Sum_probs=75.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-------------CccccccCCHHH
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-------------PVTWKRASSMDE  232 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~e  232 (386)
                      ++|+|||+|.||..+|..|+ . |.+|++||++..... .        +...+..             ........++++
T Consensus         1 MkI~VIG~G~vG~~~A~~La-~-G~~V~~~d~~~~~~~-~--------l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~   69 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLS-L-QNEVTIVDILPSKVD-K--------INNGLSPIQDEYIEYYLKSKQLSIKATLDSKA   69 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-T-TSEEEEECSCHHHHH-H--------HHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHh-C-CCEEEEEECCHHHHH-H--------HHcCCCCcCCCCHHHHHHhccCcEEEeCCHHH
Confidence            47999999999999999985 5 899999999865421 1        1111100             001122357788


Q ss_pred             HhhhCCEEEEccCCCh----------hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          233 VLREADVISLHPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       233 ll~~aDiVvl~lPlt~----------~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      .++.||+|++|+|...          .....+ +.... +++++++|+.+.-.+-..+.+.+.+..
T Consensus        70 ~~~~aDvviiavpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~  133 (402)
T 1dlj_A           70 AYKEAELVIIATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQT  133 (402)
T ss_dssp             HHHHCSEEEECCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTC
T ss_pred             HhcCCCEEEEecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCC
Confidence            8999999999999753          133333 34555 889999999777666666777776654

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.25  E-value=4.5e-06  Score=74.88  Aligned_cols=124  Identities=11%  Similarity=0.133  Sum_probs=79.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|+| .|.||+.+++.| ...|.+|.++||+..... ...+.+.....     ..... ..+++++++++|+|++++
T Consensus         1 m~i~iiGa~G~~G~~ia~~l-~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~D~Vi~~~   72 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEKAE-AKAAEYRRIAG-----DASIT-GMKNEDAAEACDIAVLTI   72 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHHHH-HHHHHHHHHHS-----SCCEE-EEEHHHHHHHCSEEEECS
T ss_pred             CeEEEEcCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-HHHHHhccccc-----cCCCC-hhhHHHHHhcCCEEEEeC
Confidence            4799999 999999999998 467899999999765421 11111100000     00011 357888899999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC------------HHHHHHHHHcCCcceEEeeccCCCCC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVID------------EVALVEHLKQNPMFRVGLDVFEDEPY  304 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~vd------------e~aL~~aL~~g~i~gaalDV~~~EP~  304 (386)
                      |. ..+..++. +....++ +.++|+++.|--.+            .+.|.+.+..    ...++++.+.|.
T Consensus        73 ~~-~~~~~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~~  137 (212)
T 1jay_A           73 PW-EHAIDTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIPA  137 (212)
T ss_dssp             CH-HHHHHHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCCH
T ss_pred             Ch-hhHHHHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchHH
Confidence            93 33444432 3333454 89999999865432            4666666642    345677776653

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.25  E-value=3.8e-06  Score=85.46  Aligned_cols=119  Identities=13%  Similarity=0.124  Sum_probs=75.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--------CccccccCCHHHHhhh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLRE  236 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~ell~~  236 (386)
                      .++|+|||+|.||..+|..|+ ..|.+|++||++.... +....... .....+..        ........++++.++.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la-~~G~~V~~~d~~~~~v-~~l~~~~~-~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~   84 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLA-DIGHDVFCLDVDQAKI-DILNNGGV-PIHEPGLKEVIARNRSAGRLRFSTDIEAAVAH   84 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCC-SSCCTTHHHHHHHHHHTTCEEEECCHHHHHHH
T ss_pred             CceEEEECcCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHCCCC-CcCCCCHHHHHHHhcccCCEEEECCHHHHhhc
Confidence            468999999999999999985 6789999999986542 11111000 00000000        0012234678888999


Q ss_pred             CCEEEEccCCC---------hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          237 ADVISLHPVLD---------KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       237 aDiVvl~lPlt---------~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      ||+|++|+|..         ......+ ++....+++++++|+.|...+-..+.+.+.+.
T Consensus        85 aDvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~  143 (478)
T 2y0c_A           85 GDVQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA  143 (478)
T ss_dssp             CSEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred             CCEEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence            99999999863         2233333 44566789999999998544433444555554

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.24  E-value=2.4e-06  Score=80.92  Aligned_cols=109  Identities=14%  Similarity=0.117  Sum_probs=72.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++.|+++.|+|.|.+|++++..| ...|+ +|++++|+.....+         +    ..........++++.+.++|+|
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a~~---------l----a~~~~~~~~~~~~~~~~~aDiV  179 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANEL-YKIVRPTLTVANRTMSRFNN---------W----SLNINKINLSHAESHLDEFDII  179 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHH-HTTCCSCCEEECSCGGGGTT---------C----CSCCEEECHHHHHHTGGGCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHHHH---------H----HHhcccccHhhHHHHhcCCCEE
Confidence            57899999999999999999998 57898 89999998754210         1    0111111234566778899999


Q ss_pred             EEccCCC--hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          241 SLHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       241 vl~lPlt--~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      +.++|..  +.....+.   .+.++++.+++|+...+. .+. |+++.++.
T Consensus       180 InaTp~Gm~~~~~~~l~---~~~l~~~~~V~D~vY~P~-~T~-ll~~A~~~  225 (277)
T 3don_A          180 INTTPAGMNGNTDSVIS---LNRLASHTLVSDIVYNPY-KTP-ILIEAEQR  225 (277)
T ss_dssp             EECCC-------CCSSC---CTTCCSSCEEEESCCSSS-SCH-HHHHHHHT
T ss_pred             EECccCCCCCCCcCCCC---HHHcCCCCEEEEecCCCC-CCH-HHHHHHHC
Confidence            9999964  22222232   356789999999987643 344 55554443

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.24  E-value=2.4e-06  Score=81.24  Aligned_cols=173  Identities=21%  Similarity=0.223  Sum_probs=107.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhc----C-CCcEEEecCC--ccccHHHH-HHhhccCCcEEEEccccccccCh
Q 016620           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG----D-KCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDV  102 (386)
Q Consensus        31 ~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~----~-~ad~vi~~~~--~~~~~~~l-~~l~~l~~k~i~~~~~G~d~id~  102 (386)
                      +..++.|.+.+....++ ..+++|+.+.+.    + ..+++++..+  ..+++..+ +.....  |-+    -|+..+++
T Consensus        60 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p~--KDV----DG~~~~N~  132 (300)
T 4a26_A           60 KAAAEVGMASFNVELPE-DISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHPH--KDA----DALLPVNV  132 (300)
T ss_dssp             HHHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCGG--GCT----TCCSHHHH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCcc--ccc----ccCCcceE
Confidence            34566788776655543 347777775542    1 4789998764  44555443 332211  111    12222222


Q ss_pred             hHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHH
Q 016620          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (386)
Q Consensus       103 ~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA  181 (386)
                      -.+...+    ..++ +...++.-++-    ++++                     .+.+++|+++.|||.|. +|+.+|
T Consensus       133 G~l~~g~----~~~~-~~PcTp~gv~~----lL~~---------------------~~i~l~Gk~vvVIG~s~iVG~p~A  182 (300)
T 4a26_A          133 GLLHYKG----REPP-FTPCTAKGVIV----LLKR---------------------CGIEMAGKRAVVLGRSNIVGAPVA  182 (300)
T ss_dssp             HHHHCTT----CCCS-CCCHHHHHHHH----HHHH---------------------HTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             EEeecCC----CcCC-CCCCCHHHHHH----HHHH---------------------cCCCCCCCEEEEECCCchHHHHHH
Confidence            2221110    0133 34455554442    2221                     12479999999999988 699999


Q ss_pred             HHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH--HHhhhCCEEEEccCCChhhhhcccHHHH
Q 016620          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EVLREADVISLHPVLDKTTYHLINKERL  259 (386)
Q Consensus       182 ~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--ell~~aDiVvl~lPlt~~t~~li~~~~~  259 (386)
                      +.| ...|++|++++++.                            .+++  +.+++||+|+.+++.    .++|..+. 
T Consensus       183 ~lL-~~~gAtVtv~~~~T----------------------------~~l~l~~~~~~ADIVI~Avg~----p~~I~~~~-  228 (300)
T 4a26_A          183 ALL-MKENATVTIVHSGT----------------------------STEDMIDYLRTADIVIAAMGQ----PGYVKGEW-  228 (300)
T ss_dssp             HHH-HHTTCEEEEECTTS----------------------------CHHHHHHHHHTCSEEEECSCC----TTCBCGGG-
T ss_pred             HHH-HHCCCeEEEEeCCC----------------------------CCchhhhhhccCCEEEECCCC----CCCCcHHh-
Confidence            998 58899999998632                            2455  889999999999995    44677654 


Q ss_pred             hcCCCCcEEEEcCCCcc
Q 016620          260 ATMKKEAILVNCSRGPV  276 (386)
Q Consensus       260 ~~mk~gailIN~aRg~~  276 (386)
                        +|+|+++||++.-.+
T Consensus       229 --vk~GavVIDvgi~~~  243 (300)
T 4a26_A          229 --IKEGAAVVDVGTTPV  243 (300)
T ss_dssp             --SCTTCEEEECCCEEE
T ss_pred             --cCCCcEEEEEeccCC
Confidence              599999999987544

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.23  E-value=4.2e-06  Score=81.03  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=74.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-Cccc-cccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|||+|.||..+|..|+ ..|.+|.+||++.... +...+...-.+...... .... ....+++++++.+|+|++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLA-LKGQSVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHH-hCCCEEEEEeCCHHHH-HHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence            68999999999999999984 6789999999976532 11111000000000000 0000 1246888988999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +|... +..++ ++....+++++++|+. -|.......+.+.+..
T Consensus        83 v~~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           83 VPAIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             SCGGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             CCchH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            99644 34444 5566778999999998 4412233445555554

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.23  E-value=5.5e-06  Score=77.36  Aligned_cols=105  Identities=17%  Similarity=0.180  Sum_probs=74.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +.| +++|+|.|.+|++++..| ...|+ +|++++|+.... ++        +.    .........++.+.++++|+|+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L-~~~G~~~I~v~nR~~~ka-~~--------la----~~~~~~~~~~~~~~~~~aDiVI  171 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYAL-LQMGVKDIWVVNRTIERA-KA--------LD----FPVKIFSLDQLDEVVKKAKSLF  171 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHH-HHTTCCCEEEEESCHHHH-HT--------CC----SSCEEEEGGGHHHHHHTCSEEE
T ss_pred             CCC-eEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HH--------HH----HHcccCCHHHHHhhhcCCCEEE
Confidence            578 999999999999999998 47888 899999987542 11        11    1111123457788899999999


Q ss_pred             EccCCC--hhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          242 LHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       242 l~lPlt--~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      +++|..  ++ ...+..+.   ++++.+++++.-+   .++-|.++.+.|
T Consensus       172 natp~gm~p~-~~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          172 NTTSVGMKGE-ELPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             ECSSTTTTSC-CCSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             ECCCCCCCCC-CCCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            999863  22 22344444   4689999999988   566666666665

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.22  E-value=9.2e-06  Score=86.71  Aligned_cols=154  Identities=18%  Similarity=0.155  Sum_probs=89.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh---hcCCC--------CccccccCCHHHHh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQ--------PVTWKRASSMDEVL  234 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~--------~~~~~~~~~l~ell  234 (386)
                      ++|||||+|.||..+|..++ ..|.+|++||++....... .......++   ..+..        ........++ +.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~-~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~  389 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAG-IGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESF  389 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-TTTCCEEEECSSHHHHHHH-HHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGG
T ss_pred             cEEEEEcCCHhhHHHHHHHH-hCCCEEEEEECCHHHHHHH-HHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHH
Confidence            57999999999999999985 6799999999987543211 000000011   11110        0111223456 568


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKN  314 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~n  314 (386)
                      ++||+|+.++|.+.+.+.-+-.+..+.++++++++..+.+  +....+.+.++. .-..++++.|.  |.     ..++.
T Consensus       390 ~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-p~~~iG~hf~~--P~-----~~~~l  459 (725)
T 2wtb_A          390 RDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKS-QDRIVGAHFFS--PA-----HIMPL  459 (725)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSC-TTTEEEEEECS--ST-----TTCCE
T ss_pred             CCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcC-CCCEEEecCCC--Cc-----ccCce
Confidence            9999999999987665554446677789999998644333  223445544432 12346666665  32     23455


Q ss_pred             eEEcCCCCCCcHHHHHHHH
Q 016620          315 AIVVPHIASASKWTREGMA  333 (386)
Q Consensus       315 vilTPHia~~t~~~~~~~~  333 (386)
                      +.+.|+- ..+.++.+.+.
T Consensus       460 vevv~g~-~t~~e~~~~~~  477 (725)
T 2wtb_A          460 LEIVRTN-HTSAQVIVDLL  477 (725)
T ss_dssp             EEEEECS-SCCHHHHHHHH
T ss_pred             EEEEECC-CCCHHHHHHHH
Confidence            6666542 23455544443

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.21  E-value=3.7e-06  Score=81.62  Aligned_cols=107  Identities=17%  Similarity=0.196  Sum_probs=69.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCC-------cEEEEEcCChh-----hHHHHHHhhhhhhhhh-cC-CCCccccccCCH
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLKA-NG-EQPVTWKRASSM  230 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l  230 (386)
                      .++|+|||+|.||..+|..|+ ..|       .+|.+||++..     .. +.... ....... .+ ..+.......++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~-~~g~~~~~~~~~V~~~~r~~~~~~~~~~-~~l~~-~~~~~~~~~~~~~~~~~~~~~~~   84 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVG-GNAAQLAQFDPRVTMWVFEEDIGGKKLT-EIINT-QHENVKYLPGHKLPPNVVAVPDV   84 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHH-HHHHHCTTEEEEEEEECCCCBSSSSBHH-HHHHH-HSCCTTTSTTCCCCTTEEEESSH
T ss_pred             CCeEEEECCCHHHHHHHHHHH-hcCCcccCCCCeEEEEEcChhhhhhHHH-HHHHh-cCcccccCCcccCccCeEEEcCH
Confidence            358999999999999999985 446       89999998765     21 11100 0000000 00 001122234678


Q ss_pred             HHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       231 ~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      +++++.||+|++|+|. .....++ ++....+++++++|+++.|-.
T Consensus        85 ~~~~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           85 VQAAEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHHHTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HHHHcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            8889999999999995 3444444 445566789999999988754

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.19  E-value=2.1e-06  Score=79.72  Aligned_cols=98  Identities=22%  Similarity=0.320  Sum_probs=65.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .++|||||+|.||+.+|+.|+ ..|    .+|.+||++...                    .+.....+.+++++++|+|
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~-~~g~~~~~~v~~~~~~~~~--------------------~g~~~~~~~~~~~~~~D~v   62 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIA-NANIIKKENLFYYGPSKKN--------------------TTLNYMSSNEELARHCDII   62 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHH-HHTSSCGGGEEEECSSCCS--------------------SSSEECSCHHHHHHHCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCCCCCeEEEEeCCccc--------------------CceEEeCCHHHHHhcCCEE
Confidence            468999999999999999985 456    689999987532                    1122345788999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      ++|+|. .....++ .+....++ +.++|....|  ++.+.+.+.+..
T Consensus        63 i~~v~~-~~~~~v~-~~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~  105 (262)
T 2rcy_A           63 VCAVKP-DIAGSVL-NNIKPYLS-SKLLISICGG--LNIGKLEEMVGS  105 (262)
T ss_dssp             EECSCT-TTHHHHH-HHSGGGCT-TCEEEECCSS--CCHHHHHHHHCT
T ss_pred             EEEeCH-HHHHHHH-HHHHHhcC-CCEEEEECCC--CCHHHHHHHhCC
Confidence            999994 4455544 23444564 4444444333  233566666654

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.19  E-value=4.2e-06  Score=80.34  Aligned_cols=110  Identities=18%  Similarity=0.166  Sum_probs=72.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcC--ChhhHHHHHHhhhhhhhhhcCCC---C---ccccccC--CHHHHhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQ---P---VTWKRAS--SMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~~--~l~ell~  235 (386)
                      ++|+|||+|.||..+|..|+ ..|.+|++||+  +.... +.        +...+..   +   .......  ++++.++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~~~-~~--------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   70 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEIL-KS--------ISAGREHPRLGVKLNGVEIFWPEQLEKCLE   70 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHHH-HH--------HHTTCCBTTTTBCCCSEEEECGGGHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEEccCCHHHH-HH--------HHHhCcCcccCccccceEEecHHhHHHHHh
Confidence            47999999999999999985 56889999999  55432 11        1111110   0   0011233  6778889


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc---c-cCHHHHHHHHHc
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP---V-IDEVALVEHLKQ  288 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~---~-vde~aL~~aL~~  288 (386)
                      .+|+|++++|.. .+..++ ++... +++++++|+++.|-   - -..+.+.+.+.+
T Consensus        71 ~~D~vi~~v~~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           71 NAEVVLLGVSTD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             TCSEEEECSCGG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             cCCEEEEcCChH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            999999999964 444444 34556 88899999998764   1 123445666654

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.19  E-value=1.8e-06  Score=84.46  Aligned_cols=106  Identities=14%  Similarity=0.185  Sum_probs=68.5

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cC-CCCccccccCCHHHHhhhCCEEEEcc
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NG-EQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      +|+|||+|.||..+|..|+ ..|.+|.+||++.... +...+.. ..... .+ ..+.......+++++++.+|+|++|+
T Consensus        17 kI~iIG~G~mG~~la~~L~-~~G~~V~~~~r~~~~~-~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav   93 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLS-KKCREVCVWHMNEEEV-RLVNEKR-ENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVI   93 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTEEEEEEECSCHHHH-HHHHHHT-BCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECC
T ss_pred             eEEEECCCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHHcC-cccccccccccccceeeeCCHHHHHcCCCEEEECC
Confidence            8999999999999999984 6788999999986432 1111100 00000 00 00111223467888899999999999


Q ss_pred             CCChhhhhcccHH---HHhcCCC-CcEEEEcCCCcc
Q 016620          245 VLDKTTYHLINKE---RLATMKK-EAILVNCSRGPV  276 (386)
Q Consensus       245 Plt~~t~~li~~~---~~~~mk~-gailIN~aRg~~  276 (386)
                      |. .....++...   ....+++ ++++|+++.|-.
T Consensus        94 ~~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~  128 (366)
T 1evy_A           94 PT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  128 (366)
T ss_dssp             CH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             Ch-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence            94 4455554321   4455677 899999987643

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.17  E-value=4.3e-06  Score=84.97  Aligned_cols=116  Identities=14%  Similarity=0.080  Sum_probs=74.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-Cc-EEEEEcCChh----hHHHHHHhh------hhhhhhhc---CCCCccccccCCH
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGF-KM-NLIYYDLYQA----TRLEKFVTA------YGQFLKAN---GEQPVTWKRASSM  230 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~f-g~-~V~~~d~~~~----~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~l  230 (386)
                      ++|+|||+|.+|..+|..|+ .. |. +|++||++..    .. +.....      |...+...   ...........+ 
T Consensus        19 mkIaVIGlG~mG~~lA~~la-~~~G~~~V~~~D~~~~~~~~kv-~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-   95 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFA-DAPCFEKVLGFQRNSKSSGYKI-EMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-   95 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HSTTCCEEEEECCCCTTTTTHH-HHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred             CEEEEECcCHHHHHHHHHHH-HhCCCCeEEEEECChhHhHHHH-HHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence            58999999999999999986 56 88 9999999876    32 111000      00000000   000001112234 


Q ss_pred             HHHhhhCCEEEEccCCCh--------hhhhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 016620          231 DEVLREADVISLHPVLDK--------TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVE  284 (386)
Q Consensus       231 ~ell~~aDiVvl~lPlt~--------~t~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~  284 (386)
                      .+.+++||+|++|+|...        +...+.  .+.....+++|.++|+.|.-++--.+.+.+
T Consensus        96 ~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~  159 (478)
T 3g79_A           96 FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK  159 (478)
T ss_dssp             GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred             HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence            678899999999999652        222232  245677899999999999877655666654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.13  E-value=2.1e-05  Score=75.84  Aligned_cols=149  Identities=11%  Similarity=0.100  Sum_probs=94.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHH--HHHh-hhhhhhhhcCCCC---------ccccccCCHH
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGEQP---------VTWKRASSMD  231 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~~~---------~~~~~~~~l~  231 (386)
                      .-.+|+|||.|.||+.+|..++ ..|++|+.||+++.....  +... .+.. +...+...         .......+++
T Consensus         5 ~~~~VaViGaG~MG~giA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~~-~~~~g~~~~~~~~~~~l~~i~~~~~l~   82 (319)
T 3ado_A            5 AAGDVLIVGSGLVGRSWAMLFA-SGGFRVKLYDIEPRQITGALENIRKEMKS-LQQSGSLKGSLSAEEQLSLISSCTNLA   82 (319)
T ss_dssp             --CEEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHHH-HHHTTCCCSSSCHHHHHHTEEEECCHH
T ss_pred             CCCeEEEECCcHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHH-HHHcCCCCCccCHHHHHhhcccccchH
Confidence            3468999999999999999985 679999999998754221  1111 1111 11111110         0122357899


Q ss_pred             HHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCC
Q 016620          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSE  311 (386)
Q Consensus       232 ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~  311 (386)
                      +.++.||+|+=++|-+-+.+.-+-++.=+.++++++|-.-+++  +....|.++++. .=...++..|.+-|     +..
T Consensus        83 ~a~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP~~-----~m~  154 (319)
T 3ado_A           83 EAVEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNPPY-----YIP  154 (319)
T ss_dssp             HHTTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSSTT-----TCC
T ss_pred             hHhccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCCcc-----ccc
Confidence            9999999999999988777766667777788999988544443  344666666553 34556666554332     222


Q ss_pred             CCCeEEcCCCC
Q 016620          312 MKNAIVVPHIA  322 (386)
Q Consensus       312 ~~nvilTPHia  322 (386)
                      +=-|+-+|+++
T Consensus       155 LVEiv~g~~Ts  165 (319)
T 3ado_A          155 LVELVPHPETS  165 (319)
T ss_dssp             EEEEEECTTCC
T ss_pred             hHHhcCCCCCc
Confidence            22366666654

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.13  E-value=3.8e-06  Score=82.53  Aligned_cols=105  Identities=12%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC-------cEEEEEcCChh-----hHHHHHHhhhhhhhhh-cC-CCCccccccCCHH
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQA-----TRLEKFVTAYGQFLKA-NG-EQPVTWKRASSMD  231 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg-------~~V~~~d~~~~-----~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~  231 (386)
                      ++|+|||.|.||..+|..|++ .|       .+|.+||++..     .. +.... ....... .+ ..+.+.....+++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~-~G~~~~~~~~~V~~~~r~~~~~~~~~~-~~l~~-~~~~~~~~~~~~~~~~i~~~~~~~   98 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGT-NAKNNYLFENEVRMWIRDEFVNGERMV-DIINN-KHENTKYLKGVPLPHNIVAHSDLA   98 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHH-HHHHCTTBCSCEEEECCSCC---CCHH-HHHHH-HCBCTTTSTTCBCCTTEEEESSTH
T ss_pred             CEEEEECcCHHHHHHHHHHHH-cCCccCCCCCeEEEEECChhhhhHHHH-HHHHh-cCcccccCCcccCcCCeEEECCHH
Confidence            479999999999999998854 45       78999998764     21 11100 0000000 00 0111223346788


Q ss_pred             HHhhhCCEEEEccCCChhhhhcccHHHHh----cCCCCcEEEEcCCCc
Q 016620          232 EVLREADVISLHPVLDKTTYHLINKERLA----TMKKEAILVNCSRGP  275 (386)
Q Consensus       232 ell~~aDiVvl~lPlt~~t~~li~~~~~~----~mk~gailIN~aRg~  275 (386)
                      ++++.||+|++++|. .....++ .+...    .+++++++|+++.|-
T Consensus        99 ea~~~aDvVilav~~-~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A           99 SVINDADLLIFIVPC-QYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             HHHTTCSEEEECCCH-HHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             HHHcCCCEEEEcCCH-HHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            889999999999994 4444444 33444    678899999998773

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.10  E-value=1.6e-05  Score=75.90  Aligned_cols=114  Identities=15%  Similarity=0.166  Sum_probs=74.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++.|++++|+|.|.+|+.++..| ...|+ +|++++|+.... ++..+.       .+..........++.+.+.++|+|
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L-~~~G~~~V~v~nR~~~ka-~~la~~-------~~~~~~~~~~~~~~~~~~~~aDiv  208 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSL-LSTAAERIDMANRTVEKA-ERLVRE-------GDERRSAYFSLAEAETRLAEYDII  208 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECSSHHHH-HHHHHH-------SCSSSCCEECHHHHHHTGGGCSEE
T ss_pred             CCCCCEEEEECcHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHH-------hhhccCceeeHHHHHhhhccCCEE
Confidence            47899999999999999999998 57898 999999986542 221111       111000111113566778899999


Q ss_pred             EEccCCChhhh---hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          241 SLHPVLDKTTY---HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       241 vl~lPlt~~t~---~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      +.++|......   -.+.   ...++++.+++|++.. ...+. |.+..++.
T Consensus       209 In~t~~~~~~~~~~~~i~---~~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~  255 (297)
T 2egg_A          209 INTTSVGMHPRVEVQPLS---LERLRPGVIVSDIIYN-PLETK-WLKEAKAR  255 (297)
T ss_dssp             EECSCTTCSSCCSCCSSC---CTTCCTTCEEEECCCS-SSSCH-HHHHHHHT
T ss_pred             EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEcCCC-CCCCH-HHHHHHHC
Confidence            99999754211   1233   2457889999999885 33443 66665554

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.09  E-value=4.3e-06  Score=70.83  Aligned_cols=103  Identities=12%  Similarity=0.120  Sum_probs=73.6

Q ss_pred             cCCCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          163 LKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       163 l~g~~vgIvG~----G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      ..-++|+|||+    |.+|..+++.| +..|.+|+.+|+.....                   .+...+.+++|+....|
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L-~~~G~~V~~vnp~~~~i-------------------~G~~~~~s~~el~~~vD   71 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDVD   71 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTCC
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHH-HHCCCEEEEeCCCCCeE-------------------CCeeecCCHHHhCCCCC
Confidence            45678999999    99999999998 57788999888864220                   11223568889888999


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++++++| .+....++. +..+ ...++++++.+.    ..++|.+.+++..+.
T Consensus        72 lvii~vp-~~~v~~v~~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           72 VIVFVVP-PKVGLQVAK-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             EEEECSC-HHHHHHHHH-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             EEEEEeC-HHHHHHHHH-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            9999999 466666653 3444 566777777754    257777777765443

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.09  E-value=7.3e-06  Score=75.30  Aligned_cols=97  Identities=23%  Similarity=0.241  Sum_probs=71.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiVvl~  243 (386)
                      ++|||||+|.||+.+++.|. .-|+++ .+||++...                  ..    .+.++++++ .++|+|++|
T Consensus         1 m~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~~~------------------~~----~~~~~~~l~~~~~DvVv~~   57 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRGEH------------------EK----MVRGIDEFLQREMDVAVEA   57 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCCC------------------TT----EESSHHHHTTSCCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCcch------------------hh----hcCCHHHHhcCCCCEEEEC
Confidence            37999999999999999874 678887 688876421                  00    246889999 699999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde---~aL~~aL~~g~  290 (386)
                      +|... ..    +.....++.|..+++.+.+..-+.   +.|.++.++..
T Consensus        58 ~~~~~-~~----~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g  102 (236)
T 2dc1_A           58 ASQQA-VK----DYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTG  102 (236)
T ss_dssp             SCHHH-HH----HHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHC
T ss_pred             CCHHH-HH----HHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcC
Confidence            99421 11    223455678999999988876655   67777776543

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.08  E-value=1.2e-05  Score=80.76  Aligned_cols=110  Identities=19%  Similarity=0.228  Sum_probs=74.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH---------
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---------  233 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el---------  233 (386)
                      -+|+++.|||+|.+|..+|..|+ ..|.+|++||+++.....         +.. +..+.   ....++|+         
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La-~~G~~V~~~D~~~~kv~~---------L~~-g~~pi---~epgl~~ll~~~~~~g~   74 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFA-KHGVDVLGVDINQQTIDK---------LQN-GQISI---EEPGLQEVYEEVLSSGK   74 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHHHH---------HHT-TCCSS---CCTTHHHHHHHHHHTTC
T ss_pred             ccCCccEEEeeCHHHHHHHHHHH-HCCCEEEEEECCHHHHHH---------HHC-CCCCc---CCCCHHHHHHhhcccCc
Confidence            57889999999999999999985 679999999998764321         111 11111   11222222         


Q ss_pred             ------hhhCCEEEEccCCChhh--------hhcc--cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620          234 ------LREADVISLHPVLDKTT--------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (386)
Q Consensus       234 ------l~~aDiVvl~lPlt~~t--------~~li--~~~~~~~mk~gailIN~aRg~~vde~aL~~aL  286 (386)
                            +++||+|++|+|...+.        ..+.  .+...+.+++|+++|+.|.-.+--.+.+.+.+
T Consensus        75 l~~ttd~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i  143 (431)
T 3ojo_A           75 LKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV  143 (431)
T ss_dssp             EEEESSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred             eEEeCchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence                  35799999999965421        1232  24567789999999999988776677776654

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.08  E-value=1.7e-05  Score=76.31  Aligned_cols=96  Identities=19%  Similarity=0.311  Sum_probs=66.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ..++++|||.|.+|+.+++.|+..++ -+|.+|||+ +.  +++.+.+.   ...+   ...... ++++++++||+|++
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a--~~la~~l~---~~~g---~~~~~~-~~~eav~~aDIVi~  189 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-AS--PEILERIG---RRCG---VPARMA-APADIAAQADIVVT  189 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CC--HHHHHHHH---HHHT---SCEEEC-CHHHHHHHCSEEEE
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HH--HHHHHHHH---HhcC---CeEEEe-CHHHHHhhCCEEEE
Confidence            46789999999999999998754344 489999998 32  22211110   0011   112234 89999999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |+|..   ..++..   ..+++|+.++++|...
T Consensus       190 aT~s~---~pvl~~---~~l~~G~~V~~vGs~~  216 (313)
T 3hdj_A          190 ATRST---TPLFAG---QALRAGAFVGAIGSSL  216 (313)
T ss_dssp             CCCCS---SCSSCG---GGCCTTCEEEECCCSS
T ss_pred             ccCCC---CcccCH---HHcCCCcEEEECCCCC
Confidence            99963   455554   3589999999998743

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.04  E-value=6.1e-06  Score=78.15  Aligned_cols=116  Identities=18%  Similarity=0.186  Sum_probs=69.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCC-CCccccccCCHHHHhh---hCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLR---EADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~ell~---~aDiVv  241 (386)
                      ++|+|||+|.||..+|..|+ ..|.+|++||++.... +...+. +-.....+. ..... ...+.+++.+   .+|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~-~~g~~V~~~~r~~~~~-~~~~~~-g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLH-QGGNDVTLIDQWPAHI-EAIRKN-GLIADFNGEEVVANL-PIFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHHH-CEEEEETTEEEEECC-CEECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHH-hCCCcEEEEECCHHHH-HHHHhC-CEEEEeCCCeeEecc-eeecchhhcccCCCCCEEE
Confidence            58999999999999999984 6788999999976432 111110 000000000 00000 0112334443   899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +|+|. ..+..++ ++....+++++++|+++.|-- ..+.+.+.+..
T Consensus        80 ~~v~~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~  123 (316)
T 2ew2_A           80 ALTKA-QQLDAMF-KAIQPMITEKTYVLCLLNGLG-HEDVLEKYVPK  123 (316)
T ss_dssp             ECSCH-HHHHHHH-HHHGGGCCTTCEEEECCSSSC-THHHHTTTSCG
T ss_pred             EEecc-ccHHHHH-HHHHHhcCCCCEEEEecCCCC-cHHHHHHHcCC
Confidence            99994 3445544 445567889999999987532 33555555544

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.03  E-value=8e-06  Score=78.90  Aligned_cols=93  Identities=17%  Similarity=0.359  Sum_probs=63.9

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC------ccccccCCHHHHhhhCC
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP------VTWKRASSMDEVLREAD  238 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~ell~~aD  238 (386)
                      ..+|+|||+|.||..+|..|+ .-|.+|.+|+|+.... +.        +...+...      .......++++ +..+|
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~-~~G~~V~~~~r~~~~~-~~--------l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aD   82 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLH-ENGEEVILWARRKEIV-DL--------INVSHTSPYVEESKITVRATNDLEE-IKKED   82 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSHHHH-HH--------HHHHSCBTTBTTCCCCSEEESCGGG-CCTTE
T ss_pred             CCcEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHH-HH--------HHHhCCcccCCCCeeeEEEeCCHHH-hcCCC
Confidence            457999999999999999985 5689999999986432 11        11111100      01223457778 88999


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCC-CCcEEEEcCCC
Q 016620          239 VISLHPVLDKTTYHLINKERLATMK-KEAILVNCSRG  274 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk-~gailIN~aRg  274 (386)
                      +|++++|. ..+..++     ..++ ++.++|+++-|
T Consensus        83 vVil~vk~-~~~~~v~-----~~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           83 ILVIAIPV-QYIREHL-----LRLPVKPSMVLNLSKG  113 (335)
T ss_dssp             EEEECSCG-GGHHHHH-----TTCSSCCSEEEECCCC
T ss_pred             EEEEECCH-HHHHHHH-----HHhCcCCCEEEEEeCC
Confidence            99999994 4444443     3343 78899999876

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.02  E-value=7.4e-06  Score=74.50  Aligned_cols=93  Identities=22%  Similarity=0.225  Sum_probs=60.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      -++|+|||+|.||+.+|+.|+ ..|.+|.+ +||+..... .....+       +.     ....+..+.++++|+|+++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~-~~g~~V~~v~~r~~~~~~-~l~~~~-------g~-----~~~~~~~~~~~~aDvVila   88 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFT-AAQIPAIIANSRGPASLS-SVTDRF-------GA-----SVKAVELKDALQADVVILA   88 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHH-HTTCCEEEECTTCGGGGH-HHHHHH-------TT-----TEEECCHHHHTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCCHHHHH-HHHHHh-------CC-----CcccChHHHHhcCCEEEEe
Confidence            368999999999999999984 67889998 998865422 111111       11     1122445668899999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +|. .....++..  +.. .++.++|+++-|-
T Consensus        89 vp~-~~~~~v~~~--l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           89 VPY-DSIADIVTQ--VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             SCG-GGHHHHHTT--CSC-CTTCEEEECCCCB
T ss_pred             CCh-HHHHHHHHH--hhc-cCCCEEEEcCCCC
Confidence            993 222332211  112 3578999998653

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.02  E-value=5.4e-06  Score=77.70  Aligned_cols=97  Identities=10%  Similarity=0.079  Sum_probs=65.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cc-cccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TW-KRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~l~ell~~aDiVvl  242 (386)
                      ++|+|||+|.||..+|..|+ ..|.+|.+|||+.... +.        +...+..+.  .. ....+ .+.++.+|+|++
T Consensus         1 m~i~iiG~G~~G~~~a~~l~-~~g~~V~~~~r~~~~~-~~--------l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~   69 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALC-KQGHEVQGWLRVPQPY-CS--------VNLVETDGSIFNESLTAND-PDFLATSDLLLV   69 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSCCSE-EE--------EEEECTTSCEEEEEEEESC-HHHHHTCSEEEE
T ss_pred             CeEEEECcCHHHHHHHHHHH-hCCCCEEEEEcCccce-ee--------EEEEcCCCceeeeeeeecC-ccccCCCCEEEE
Confidence            47999999999999999984 6788999999876431 10        111111110  00 01233 467789999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      ++|.. .+..++ ++....+++++++|++..|-
T Consensus        70 ~v~~~-~~~~v~-~~l~~~l~~~~~vv~~~~g~  100 (291)
T 1ks9_A           70 TLKAW-QVSDAV-KSLASTLPVTTPILLIHNGM  100 (291)
T ss_dssp             CSCGG-GHHHHH-HHHHTTSCTTSCEEEECSSS
T ss_pred             EecHH-hHHHHH-HHHHhhCCCCCEEEEecCCC
Confidence            99964 345544 45566788899999986653

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.01  E-value=2.5e-05  Score=76.23  Aligned_cols=100  Identities=18%  Similarity=0.240  Sum_probs=69.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .+++++|||.|.+|+.+++.+....+ .+|.+|||+.... +++.+.+    ...  .+.....+.++++++++||+|++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a-~~la~~~----~~~--~g~~~~~~~~~~eav~~aDiVi~  200 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIANL----KEY--SGLTIRRASSVAEAVKGVDIITT  200 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHH----TTC--TTCEEEECSSHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHH-HHHHHHH----Hhc--cCceEEEeCCHHHHHhcCCEEEE
Confidence            56789999999999999987643344 5899999987542 2222221    110  01112345789999999999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      |+|.. ....++..   ..+++|..+++++..
T Consensus       201 aTps~-~~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          201 VTADK-AYATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             CCCCS-SEEEEECG---GGCCTTCEEEECSCC
T ss_pred             eccCC-CCCceecH---HHcCCCCEEEECCCC
Confidence            99975 22345543   457899999999863

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.98  E-value=5.6e-06  Score=72.65  Aligned_cols=100  Identities=11%  Similarity=0.131  Sum_probs=64.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH--h
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV--L  234 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el--l  234 (386)
                      .++.+++|+|+|+|.+|+.+|+.| +.. |.+|+++|++......         ++..+.... .....+   ++++  +
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L-~~~~g~~V~vid~~~~~~~~---------~~~~g~~~~-~gd~~~~~~l~~~~~~  103 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDEL-RARYGKISLGIEIREEAAQQ---------HRSEGRNVI-SGDATDPDFWERILDT  103 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHH-HHHHCSCEEEEESCHHHHHH---------HHHTTCCEE-ECCTTCHHHHHTBCSC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHH-HhccCCeEEEEECCHHHHHH---------HHHCCCCEE-EcCCCCHHHHHhccCC
Confidence            357788999999999999999998 577 9999999998754211         112221111 001122   3343  6


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .++|+|++++|....+..++  ..++.+.+...++..+.
T Consensus       104 ~~ad~vi~~~~~~~~~~~~~--~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          104 GHVKLVLLAMPHHQGNQTAL--EQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             CCCCEEEECCSSHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred             CCCCEEEEeCCChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence            78999999999654444332  35556666666665433

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=97.96  E-value=8.4e-06  Score=75.06  Aligned_cols=71  Identities=10%  Similarity=0.137  Sum_probs=55.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .-++|||||+|.||.++|+.| +..|.+|.+|++.                                ++ +.+||  +++
T Consensus         5 ~~mkI~IIG~G~~G~sLA~~L-~~~G~~V~~~~~~--------------------------------~~-~~~aD--ila   48 (232)
T 3dfu_A            5 PRLRVGIFDDGSSTVNMAEKL-DSVGHYVTVLHAP--------------------------------ED-IRDFE--LVV   48 (232)
T ss_dssp             CCCEEEEECCSCCCSCHHHHH-HHTTCEEEECSSG--------------------------------GG-GGGCS--EEE
T ss_pred             CCcEEEEEeeCHHHHHHHHHH-HHCCCEEEEecCH--------------------------------HH-hccCC--EEE
Confidence            346899999999999999998 5679999999862                                11 46799  888


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +|.. ....++ .+....+++|+++++++
T Consensus        49 vP~~-ai~~vl-~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           49 IDAH-GVEGYV-EKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             ECSS-CHHHHH-HHHHTTCCTTCEEEECC
T ss_pred             EcHH-HHHHHH-HHHHHhcCCCCEEEEEC
Confidence            9975 555555 55666789999999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.94  E-value=5.9e-05  Score=64.38  Aligned_cols=104  Identities=16%  Similarity=0.182  Sum_probs=61.6

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh-hcCCCCccccccCC---HHHH-
Q 016620          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASS---MDEV-  233 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---l~el-  233 (386)
                      +.....+++|.|+|+|.+|+.+|+.| +..|.+|+++|++......         ++ ..+.. .......+   +.+. 
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L-~~~g~~V~vid~~~~~~~~---------~~~~~g~~-~~~~d~~~~~~l~~~~   81 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLA-SSSGHSVVVVDKNEYAFHR---------LNSEFSGF-TVVGDAAEFETLKECG   81 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGGGG---------SCTTCCSE-EEESCTTSHHHHHTTT
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHHH---------HHhcCCCc-EEEecCCCHHHHHHcC
Confidence            33567889999999999999999998 5789999999987654210         11 11110 00001122   2222 


Q ss_pred             hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       234 l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +..+|+|++++|....+.  .-......+.+...++-..++.
T Consensus        82 ~~~ad~Vi~~~~~~~~~~--~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           82 MEKADMVFAFTNDDSTNF--FISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             GGGCSEEEECSSCHHHHH--HHHHHHHHTSCCSEEEEECSSG
T ss_pred             cccCCEEEEEeCCcHHHH--HHHHHHHHHCCCCeEEEEECCH
Confidence            578999999999633222  2233444445555666555554

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=97.94  E-value=5.7e-06  Score=70.64  Aligned_cols=101  Identities=10%  Similarity=0.151  Sum_probs=72.3

Q ss_pred             CCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCCh--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       165 g~~vgIvG~----G~IG~~iA~~L~~~fg~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      -++|+|||+    |.+|..+++.| +..|.+|+.+|+..  ..                 .  .+...+.+++|+....|
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L-~~~G~~v~~vnp~~~g~~-----------------i--~G~~~~~sl~el~~~~D   72 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYL-LDQGYHVIPVSPKVAGKT-----------------L--LGQQGYATLADVPEKVD   72 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHH-HHHTCCEEEECSSSTTSE-----------------E--TTEECCSSTTTCSSCCS
T ss_pred             CCEEEEECcCCCCCChHHHHHHHH-HHCCCEEEEeCCcccccc-----------------c--CCeeccCCHHHcCCCCC
Confidence            567999999    89999999998 56778899988865  21                 0  11223467888888999


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++++++|. +....++. +..+ ...++++++.+.  .  ++++.+++++..+.
T Consensus        73 lvii~vp~-~~v~~v~~-~~~~-~g~~~i~i~~~~--~--~~~l~~~a~~~Gi~  119 (145)
T 2duw_A           73 MVDVFRNS-EAAWGVAQ-EAIA-IGAKTLWLQLGV--I--NEQAAVLAREAGLS  119 (145)
T ss_dssp             EEECCSCS-THHHHHHH-HHHH-HTCCEEECCTTC--C--CHHHHHHHHTTTCE
T ss_pred             EEEEEeCH-HHHHHHHH-HHHH-cCCCEEEEcCCh--H--HHHHHHHHHHcCCE
Confidence            99999994 56666663 3444 556777777642  2  67888888876543

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.89  E-value=4.7e-05  Score=74.84  Aligned_cols=103  Identities=14%  Similarity=0.223  Sum_probs=77.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC----hhhH---HHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY----QATR---LEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (386)
                      +.+.+.+|.|+|.|..|..+|+.| .+.|. +|+.+|++    ....   +..+-..|..   ...  .  .....+|+|
T Consensus       188 ~~l~~~kVVv~GAGaAG~~iAkll-~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~---~~~--~--~~~~~~L~e  259 (388)
T 1vl6_A          188 KKIEEVKVVVNGIGAAGYNIVKFL-LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIAR---ITN--P--ERLSGDLET  259 (388)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHH-HHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHH---TSC--T--TCCCSCHHH
T ss_pred             CCCCCcEEEEECCCHHHHHHHHHH-HhCCCCeEEEEECCCcccCCCcccccCHHHHHHHH---hhh--c--cCchhhHHH
Confidence            468999999999999999999997 57898 89999997    3221   1111122211   111  1  112468999


Q ss_pred             HhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       233 ll~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      .++.+|+++-+.-     -++++++.++.|+++++++.+|+...
T Consensus       260 av~~ADVlIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~  298 (388)
T 1vl6_A          260 ALEGADFFIGVSR-----GNILKPEWIKKMSRKPVIFALANPVP  298 (388)
T ss_dssp             HHTTCSEEEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSC
T ss_pred             HHccCCEEEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCC
Confidence            9999999988842     38999999999999999999998654

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.85  E-value=8.4e-06  Score=76.67  Aligned_cols=88  Identities=13%  Similarity=0.152  Sum_probs=54.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|||||+|.||+.+|+.|+ .. .+| .+||++..... ...+       ..+.      ...+++++++++|+|++|+
T Consensus         3 m~I~iIG~G~mG~~la~~l~-~~-~~v~~v~~~~~~~~~-~~~~-------~~g~------~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLK-DR-YEIGYILSRSIDRAR-NLAE-------VYGG------KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC------CCCEECSSHHHHH-HHHH-------HTCC------CCCSSCCCCC---CEEECS
T ss_pred             ceEEEEeCCHHHHHHHHHHH-Hc-CcEEEEEeCCHHHHH-HHHH-------HcCC------ccCCHHHHHhcCCEEEEeC
Confidence            47999999999999999874 34 788 58999865421 1111       1111      2346677788999999999


Q ss_pred             CCChhhhhcccHHHHhcC-CCCcEEEEcCCCc
Q 016620          245 VLDKTTYHLINKERLATM-KKEAILVNCSRGP  275 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~m-k~gailIN~aRg~  275 (386)
                      |... .     .+.+..+ +++.++||++-+-
T Consensus        67 ~~~~-~-----~~v~~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           67 PDRY-I-----KTVANHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             CTTT-H-----HHHHTTTCCSSCCEEECCSSS
T ss_pred             ChHH-H-----HHHHHHhccCCCEEEECCCCC
Confidence            9643 2     3344444 6889999998553

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.84  E-value=3.7e-05  Score=72.36  Aligned_cols=106  Identities=16%  Similarity=0.013  Sum_probs=68.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      |+++.|+|.|.+|++++..| ...|.+|++++|+..+..+ .. .       .+   ....   +++++ .++|+|+.++
T Consensus       118 ~k~vlvlGaGGaaraia~~L-~~~G~~v~V~nRt~~ka~~-la-~-------~~---~~~~---~~~~l-~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGAGGSAKALACEL-KKQGLQVSVLNRSSRGLDF-FQ-R-------LG---CDCF---MEPPK-SAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCTTHHH-HH-H-------HT---CEEE---SSCCS-SCCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH-HH-H-------CC---CeEe---cHHHh-ccCCEEEEcc
Confidence            88999999999999999998 5778999999998765321 11 1       11   1111   22222 3899999999


Q ss_pred             CCChhhhhcccHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          245 VLDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       245 Plt~~t~~li~~~~~~-~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      |..-.....+..+.+. .++++.+++|+...+  .+.-|..|-+.|
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P--~T~ll~~A~~~G  224 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEGKLAYDLAYGF--LTPFLSLAKELK  224 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS--CCHHHHHHHHTT
T ss_pred             cCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC--chHHHHHHHHCc
Confidence            9753222345555332 567788888888875  555333444433

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.84  E-value=0.0001  Score=60.83  Aligned_cols=95  Identities=13%  Similarity=0.178  Sum_probs=57.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH---H-hhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE---V-LREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e---l-l~~aDiV  240 (386)
                      +++|+|+|+|.+|+.+|+.| ...|.+|.++|++.... +....       ..+.. .......+.+.   . +.++|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~-------~~~~~-~~~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASA-------EIDAL-VINGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHH-------HCSSE-EEESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHH-------hcCcE-EEEcCCCCHHHHHHcCcccCCEE
Confidence            57899999999999999998 56799999999876532 11110       00110 00001122222   2 5789999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      ++++|....+  ..-....+.++++.+++-+
T Consensus        74 i~~~~~~~~~--~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           74 IAVTGKEEVN--LMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             EECCSCHHHH--HHHHHHHHHTTCCCEEEEC
T ss_pred             EEeeCCchHH--HHHHHHHHHcCCCEEEEEe
Confidence            9999864322  2223445567777666544

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.79  E-value=5.9e-05  Score=72.73  Aligned_cols=94  Identities=15%  Similarity=0.215  Sum_probs=66.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ..++++|||.|.+|+.+++.|++..+ .+|.+|||+.... +++.+.+.    ..+   .... +.++++++ ++|+|++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a-~~la~~~~----~~~---~~~~-~~~~~e~v-~aDvVi~  193 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAA-KKFVSYCE----DRG---ISAS-VQPAEEAS-RCDVLVT  193 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHHH----HTT---CCEE-ECCHHHHT-SSSEEEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHH-HHHHHHHH----hcC---ceEE-ECCHHHHh-CCCEEEE
Confidence            46789999999999999998754343 5799999987542 23322221    111   1123 57899999 9999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+|..   ..++..   ..+++|..+++++.
T Consensus       194 aTp~~---~pv~~~---~~l~~G~~V~~ig~  218 (322)
T 1omo_A          194 TTPSR---KPVVKA---EWVEEGTHINAIGA  218 (322)
T ss_dssp             CCCCS---SCCBCG---GGCCTTCEEEECSC
T ss_pred             eeCCC---CceecH---HHcCCCeEEEECCC
Confidence            99963   355543   45789999999954

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.75  E-value=3.2e-05  Score=76.33  Aligned_cols=83  Identities=28%  Similarity=0.440  Sum_probs=68.0

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCc---EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      ...+|.|||. |..|+..++.+ +++|+   .|.++|.+...+               +.         .++ .+.++|+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a-~~lGa~~~~V~v~D~~~~~~---------------g~---------~~~-~i~~aDi  266 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLL-HKVGIPDANILKWDIKETSR---------------GG---------PFD-EIPQADI  266 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHH-HHTTCCGGGEEEECHHHHTT---------------CS---------CCT-HHHHSSE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHH-HhCCCCcCceEEeecccccc---------------CC---------chh-hHhhCCE
Confidence            4568999999 99999999986 79998   899999764220               10         123 3568999


Q ss_pred             EEEccCCChhhhhcccHHHHhcC-CCCcEEEEcC
Q 016620          240 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~m-k~gailIN~a  272 (386)
                      |+.|+......-.+|+++.++.| |+|+++||+|
T Consensus       267 vIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          267 FINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             EEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             EEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            99999987667789999999999 9999999996

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.67  E-value=0.0001  Score=61.90  Aligned_cols=93  Identities=15%  Similarity=0.180  Sum_probs=58.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiVv  241 (386)
                      .+|.|+|+|.+|+.+|+.| +..|.+|+++|+++.....         ++..+... ......+   ++++ +.++|+|+
T Consensus         8 ~~viIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~~~---------~~~~g~~~-i~gd~~~~~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKL-LASDIPLVVIETSRTRVDE---------LRERGVRA-VLGNAANEEIMQLAHLECAKWLI   76 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHHHH---------HHHTTCEE-EESCTTSHHHHHHTTGGGCSEEE
T ss_pred             CCEEEECcCHHHHHHHHHH-HHCCCCEEEEECCHHHHHH---------HHHcCCCE-EECCCCCHHHHHhcCcccCCEEE
Confidence            4799999999999999998 6889999999998754211         11112111 0011122   2222 46899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      +++|.+.++..++  ..++.+.++..+|-.
T Consensus        77 ~~~~~~~~n~~~~--~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           77 LTIPNGYEAGEIV--ASARAKNPDIEIIAR  104 (140)
T ss_dssp             ECCSCHHHHHHHH--HHHHHHCSSSEEEEE
T ss_pred             EECCChHHHHHHH--HHHHHHCCCCeEEEE
Confidence            9999765554332  345555566666543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.66  E-value=4.7e-05  Score=72.27  Aligned_cols=115  Identities=14%  Similarity=0.091  Sum_probs=67.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-----C-cEEEEEcCChhhHHHHHHhhhhhhhhh-cCC-CCccccccCCHHHHhhhC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGF-----K-MNLIYYDLYQATRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMDEVLREA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~f-----g-~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~ell~~a  237 (386)
                      ++|+|||+|.||..+|..|+ ..     | .+|++|+| .. ..+...+..+-.... .+. .........+ .+.+..+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~-~~~~~~~g~~~V~~~~r-~~-~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~   84 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLA-LRAAATDGLLEVSWIAR-GA-HLEAIRAAGGLRVVTPSRDFLARPTCVTDN-PAEVGTV   84 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHHHHTTSSEEEEEECC-HH-HHHHHHHHTSEEEECSSCEEEECCSEEESC-HHHHCCE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCccccCCCCCEEEEEc-HH-HHHHHHhcCCeEEEeCCCCeEEecceEecC-ccccCCC
Confidence            47999999999999999985 44     7 89999998 42 222211100000000 000 0000001123 3457889


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~  287 (386)
                      |+|++|+|... +..++ ++....+++++++|++.-| +-.++.|.+.+.
T Consensus        85 D~vil~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~  131 (317)
T 2qyt_A           85 DYILFCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLP  131 (317)
T ss_dssp             EEEEECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSC
T ss_pred             CEEEEecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCC
Confidence            99999999644 34443 3444557788999998776 222345555553

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.63  E-value=4.7e-05  Score=73.53  Aligned_cols=103  Identities=14%  Similarity=0.117  Sum_probs=64.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .++|+|||.|.||..+|..|+ ..|.+|.+|+|..  ..+...+ .+-.... .+..........++++ +..+|+|++|
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~-~~g~~V~~~~r~~--~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLA-LAGEAINVLARGA--TLQALQT-AGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHH-HTTCCEEEECCHH--HHHHHHH-TCEEEEETTEEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCEEEEEEChH--HHHHHHH-CCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            368999999999999999985 5688999999842  2221110 0000000 0000001112346666 5889999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      +|. .++..++ ++....+++++++|.+.-|
T Consensus        78 vk~-~~~~~~~-~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           78 VKA-PALESVA-AGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             CCH-HHHHHHH-GGGSSSCCTTCEEEECCSS
T ss_pred             CCc-hhHHHHH-HHHHhhCCCCCEEEEECCC
Confidence            995 3444443 2334456789999999888

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.63  E-value=0.00014  Score=72.26  Aligned_cols=100  Identities=20%  Similarity=0.284  Sum_probs=70.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh-H-HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      .-|+||+|+|||||+-|.+=|..| +--|.+|++--|.... + ...+..     ..+.|     + ...+.+|+++.||
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNL-RDSGv~V~Vglr~~s~~e~~~S~~~-----A~~~G-----f-~v~~~~eA~~~AD  100 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRK-----ATENG-----F-KVGTYEELIPQAD  100 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHH-HHTTCEEEEEECHHHHHTTCHHHHH-----HHHTT-----C-EEEEHHHHGGGCS
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHH-HhcCCcEEEEeCCCCcccccchHHH-----HHHCC-----C-EecCHHHHHHhCC
Confidence            348999999999999999999998 6889998876542210 0 000000     11112     2 2357899999999


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +|.+.+|... ...++ ++....||+|+.|. .|+|=
T Consensus       101 vV~~L~PD~~-q~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          101 LVINLTPDKQ-HSDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             EEEECSCGGG-HHHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             EEEEeCChhh-HHHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            9999999643 33444 56999999999887 56664

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.60  E-value=0.00012  Score=70.33  Aligned_cols=116  Identities=18%  Similarity=0.255  Sum_probs=68.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      -..++|+|||.|.||..+|..|+ .-|.+|.+| ++... .+...+. +-.... ............++++ +..+|+|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~-~~G~~V~l~-~~~~~-~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLA-RAGHEVILI-ARPQH-VQAIEAT-GLRLETQSFDEQVKVSASSDPSA-VQGADLVL   91 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHH-HTTCEEEEE-CCHHH-HHHHHHH-CEEEECSSCEEEECCEEESCGGG-GTTCSEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHH-HCCCeEEEE-EcHhH-HHHHHhC-CeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEE
Confidence            35578999999999999999985 568899999 65432 2211110 000000 0000011111245544 58899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL  286 (386)
                      +++|.. ++...+ ++....+++++++|.+.-|=- .++.|.+.+
T Consensus        92 lavk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~-~~~~l~~~~  133 (318)
T 3hwr_A           92 FCVKST-DTQSAA-LAMKPALAKSALVLSLQNGVE-NADTLRSLL  133 (318)
T ss_dssp             ECCCGG-GHHHHH-HHHTTTSCTTCEEEEECSSSS-HHHHHHHHC
T ss_pred             EEcccc-cHHHHH-HHHHHhcCCCCEEEEeCCCCC-cHHHHHHHc
Confidence            999964 444444 444556788999999877632 234555555

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.59  E-value=0.00012  Score=70.10  Aligned_cols=119  Identities=15%  Similarity=0.118  Sum_probs=74.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh--cCCCCc-cccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPV-TWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|+|||.|.||..+|..|+ .-|.+|.+|+|+......+.  ..  ....  .+.... ......+++++.+.+|+|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~~~i~~~--Gl--~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVil   77 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLA-KTGHCVSVVSRSDYETVKAK--GI--RIRSATLGDYTFRPAAVVRSAAELETKPDCTLL   77 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HTTCEEEEECSTTHHHHHHH--CE--EEEETTTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCChHHHHHhC--Cc--EEeecCCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence            58999999999999999985 56899999998753211110  00  0000  010000 01123566776668999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++|... +...+ ++.-..+++++++|.+.-| +-.++.|.+.+...++.
T Consensus        78 avK~~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           78 CIKVVE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             CCCCCT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             ecCCCC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            999643 33333 4445567888999988776 23346677777554443

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.59  E-value=0.00013  Score=58.20  Aligned_cols=94  Identities=18%  Similarity=0.128  Sum_probs=58.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV  240 (386)
                      .+++|+|+|.|.||+.+++.| ...| .+|++++++.......         ...+....  ......++.++++.+|+|
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l-~~~g~~~v~~~~r~~~~~~~~---------~~~~~~~~~~d~~~~~~~~~~~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALL-KTSSNYSVTVADHDLAALAVL---------NRMGVATKQVDAKDEAGLAKALGGFDAV   73 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHH-HHCSSEEEEEEESCHHHHHHH---------HTTTCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CcCeEEEECCCHHHHHHHHHH-HhCCCceEEEEeCCHHHHHHH---------HhCCCcEEEecCCCHHHHHHHHcCCCEE
Confidence            457899999999999999998 5678 8999999986542111         11111000  011113456778899999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +.+.|... +..++ .   ...+.|...++.+
T Consensus        74 i~~~~~~~-~~~~~-~---~~~~~g~~~~~~~  100 (118)
T 3ic5_A           74 ISAAPFFL-TPIIA-K---AAKAAGAHYFDLT  100 (118)
T ss_dssp             EECSCGGG-HHHHH-H---HHHHTTCEEECCC
T ss_pred             EECCCchh-hHHHH-H---HHHHhCCCEEEec
Confidence            99998432 22221 1   1124577777765

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.58  E-value=0.00026  Score=69.90  Aligned_cols=96  Identities=16%  Similarity=0.080  Sum_probs=62.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEc---CChhhHHHHHHhhhhhhhhhcC------CC-C--c----ccc-ccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD---LYQATRLEKFVTAYGQFLKANG------EQ-P--V----TWK-RAS  228 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d---~~~~~~~~~~~~~~~~~~~~~~------~~-~--~----~~~-~~~  228 (386)
                      ++|+|||.|.||..+|..|++.-|.+|.+|+   ++... .+..       .+..+      .. .  .    ... ...
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~-~~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   74 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAER-WTKA-------LGADELTVIVNEKDGTQTEVKSRPKVITK   74 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHH-HHHH-------HTTSCEEEEEECSSSCEEEEEECCSEEES
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHH-HHHH-------HhhccceeeeecCCCccceeeccceEEeC
Confidence            4799999999999999998432489999999   54322 1110       11111      00 0  0    011 235


Q ss_pred             CHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       229 ~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      ++++.+..+|+|++++|... ...++ ++....+++++++++.
T Consensus        75 ~~~~a~~~aD~Vilav~~~~-~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           75 DPEIAISGADVVILTVPAFA-HEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CHHHHHTTCSEEEECSCGGG-HHHHH-HHHTTTCCTTCEEEET
T ss_pred             CHHHHhCCCCEEEEeCchHH-HHHHH-HHHHhhCCCCcEEEEc
Confidence            78888999999999999543 34333 3444567889999884

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.56  E-value=0.00019  Score=70.65  Aligned_cols=266  Identities=14%  Similarity=0.157  Sum_probs=149.3

Q ss_pred             HHhCCCeEEEecCCCCCC---------------CHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCC--cEEEEccc
Q 016620           33 LIEQDCRVEICTQKKTIL---------------SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAV   95 (386)
Q Consensus        33 l~~~~~~~~~~~~~~~~~---------------~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~--k~i~~~~~   95 (386)
                      +...+..+-++++....+               .+..+-..++ +.|++=+.....=..++++...++-.  -.|++--.
T Consensus        61 ~t~~~~~V~VvTdG~~iLGLGD~G~~aG~pI~eGK~~Lf~~~a-gid~~pi~Ldv~~~dEfv~~v~~~~p~F~~I~lED~  139 (398)
T 2a9f_A           61 LTTKKNTVAVISDGTAVLGLGDIGPEAAMPVMEGKAALFKAFA-GVDAIPIVLDTKDTEEIISIVKALAPTFGGINLEDI  139 (398)
T ss_dssp             HSGGGTEEEEEECSSSCTTSCCCCHHHHHHHHHHHHHHHHHHS-SCEEEEEECCCCCHHHHHHHHHHHGGGCSEEEECSC
T ss_pred             hcccCCEEEEEECCccccCCCCcccccCCcchhCHHHHHHhcc-CCceeeeEeCCCCHHHHHHHHHHcCCceeEeccccC
Confidence            444566776666554432               2234444444 46654333333224555455443210  23333322


Q ss_pred             cccc-cC-hhHHhh-CCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEe
Q 016620           96 GYNN-VD-VNAANK-YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (386)
Q Consensus        96 G~d~-id-~~~~~~-~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG  172 (386)
                      +..+ +. ++..++ ..|++.|. +  -.-+|=-+++-+++..|                     ..|+.+...+|.|+|
T Consensus       140 ~~p~~f~il~~~r~~~~ipvf~D-D--iqGTa~V~lAall~al~---------------------l~g~~l~d~kVVi~G  195 (398)
T 2a9f_A          140 SAPRCFEIEQRLIKECHIPVFHD-D--QHGTAIVVLAAIFNSLK---------------------LLKKSLDEVSIVVNG  195 (398)
T ss_dssp             CTTHHHHHHHHHHHHCSSCEEEH-H--HHHHHHHHHHHHHHHHH---------------------TTTCCTTSCEEEEEC
T ss_pred             CChHHHHHHHHhhhcCCcceecc-h--hhhHHHHHHHHHHHHHH---------------------HhCCCCCccEEEEEC
Confidence            2111 11 123333 35888883 2  24455566777777666                     123578999999999


Q ss_pred             cChhHHHHHHHHHhcCCc-EEEEEcCCh-----h-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          173 AGRIGSAYARMMVEGFKM-NLIYYDLYQ-----A-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       173 ~G~IG~~iA~~L~~~fg~-~V~~~d~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      .|..|..+|+.+ .++|. +|+.+|++.     + ..+..+-..|...   ...    .....+|+|+++.+|+++-+- 
T Consensus       196 AGaAG~~iA~ll-~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~---~~~----~~~~~~L~eav~~ADV~IG~S-  266 (398)
T 2a9f_A          196 GGSAGLSITRKL-LAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKV---TNR----EFKSGTLEDALEGADIFIGVS-  266 (398)
T ss_dssp             CSHHHHHHHHHH-HHHTCCEEEEEETTEECCTTCCCSCCC---CHHHH---HSC----TTCCCSCSHHHHTTCSEEECC-
T ss_pred             CCHHHHHHHHHH-HHcCCCeEEEEECCCcccCCccccchHHHHHHhhc---cCc----ccchhhHHHHhccCCEEEecC-
Confidence            999999999987 68899 999999873     1 1111111111110   000    011357999999999998773 


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-cceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA  324 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~-i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~  324 (386)
                          +-+++.++.++.|+++++++.+|....  |-.=.++.+.|+ |.+-+   -...|      =+..|+++-|-++-.
T Consensus       267 ----apgl~T~EmVk~Ma~~pIIfalsNPt~--E~~pe~a~~~g~~i~atG---rs~~p------~Q~NN~~~FPgi~~G  331 (398)
T 2a9f_A          267 ----APGVLKAEWISKMAARPVIFAMANPIP--EIYPDEALEAGAYIVGTG---RSDFP------NQINNVLAFPGIFRG  331 (398)
T ss_dssp             ----STTCCCHHHHHTSCSSCEEEECCSSSC--SSCHHHHHTTTCSEEEES---CTTSS------SBCCGGGTHHHHHHH
T ss_pred             ----CCCCCCHHHHHhhCCCCEEEECCCCCc--cCCHHHHHHhCCeEEEeC---CCCCC------CcCCceeEcchHHHH
Confidence                258999999999999999999999764  222223333354 22222   11111      356688888865432


Q ss_pred             cHH-----HHHHHHHHHHHHHHHHHcCC
Q 016620          325 SKW-----TREGMATLAALNVLGKIKGY  347 (386)
Q Consensus       325 t~~-----~~~~~~~~~~~ni~~~~~g~  347 (386)
                      ...     ..+.|...+++-|-.+..-+
T Consensus       332 al~~~a~~I~d~m~~aAa~alA~~~~~~  359 (398)
T 2a9f_A          332 ALDARAKTITVEMQIAAAKGIASLVPDD  359 (398)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHTCSSC
T ss_pred             HHHcCCcCCCHHHHHHHHHHHHhcCCcc
Confidence            111     12455555666666655544

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.56  E-value=0.00036  Score=57.63  Aligned_cols=100  Identities=11%  Similarity=0.180  Sum_probs=58.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH---HH-hhhCC
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EV-LREAD  238 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---el-l~~aD  238 (386)
                      +.+++|+|+|+|.+|+.+++.| ...|.+|+++|++.... +.        +...+.. .......+.+   ++ +.++|
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l-~~~g~~v~~~d~~~~~~-~~--------~~~~~~~-~~~~d~~~~~~l~~~~~~~~d   72 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NA--------YASYATH-AVIANATEENELLSLGIRNFE   72 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HT--------TTTTCSE-EEECCTTCHHHHHTTTGGGCS
T ss_pred             CcCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HH--------HHHhCCE-EEEeCCCCHHHHHhcCCCCCC
Confidence            5678899999999999999998 57899999999876432 11        1111110 0001112322   22 57899


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +|+++++...++.. .-......+.+. .+|-.+.+.
T Consensus        73 ~vi~~~~~~~~~~~-~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           73 YVIVAIGANIQAST-LTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             EEEECCCSCHHHHH-HHHHHHHHTTCS-EEEEECCSH
T ss_pred             EEEECCCCchHHHH-HHHHHHHHcCCC-eEEEEeCCH
Confidence            99999986523221 223344556665 555544443

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.55  E-value=0.00038  Score=65.19  Aligned_cols=100  Identities=16%  Similarity=0.125  Sum_probs=63.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiV  240 (386)
                      ++.|+++.|+|.|.+|+++|+.| ...|.+|++++|+.... ++..+.+    ...+  .  . ...+++++. .++|+|
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L-~~~G~~V~v~~R~~~~~-~~la~~~----~~~~--~--~-~~~~~~~~~~~~~Div  184 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRA-EELAKLF----AHTG--S--I-QALSMDELEGHEFDLI  184 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHT----GGGS--S--E-EECCSGGGTTCCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHcCCEEEEEECCHHHH-HHHHHHh----hccC--C--e-eEecHHHhccCCCCEE
Confidence            47889999999999999999998 47889999999986542 2211111    0000  0  0 112333333 589999


Q ss_pred             EEccCCChhhh-hcccHHHHhcCCCCcEEEEcCCCc
Q 016620          241 SLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       241 vl~lPlt~~t~-~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +.++|...... .-+..+   .++++.+++|+....
T Consensus       185 Vn~t~~~~~~~~~~i~~~---~l~~~~~v~D~~y~p  217 (271)
T 1nyt_A          185 INATSSGISGDIPAIPSS---LIHPGIYCYDMFYQK  217 (271)
T ss_dssp             EECCSCGGGTCCCCCCGG---GCCTTCEEEESCCCS
T ss_pred             EECCCCCCCCCCCCCCHH---HcCCCCEEEEeccCC
Confidence            99999643210 012222   256788888887754

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.55  E-value=9.5e-05  Score=69.97  Aligned_cols=111  Identities=20%  Similarity=0.209  Sum_probs=69.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++.|+++.|+|.|.+|++++..| ...|+ +|++++|+.... ++..+.+    ...+  ..   ...+++++..++|+|
T Consensus       123 ~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a-~~la~~~----~~~~--~~---~~~~~~~l~~~aDiI  191 (281)
T 3o8q_A          123 LLKGATILLIGAGGAARGVLKPL-LDQQPASITVTNRTFAKA-EQLAELV----AAYG--EV---KAQAFEQLKQSYDVI  191 (281)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTCCSEEEEEESSHHHH-HHHHHHH----GGGS--CE---EEEEGGGCCSCEEEE
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HhcCCCeEEEEECCHHHH-HHHHHHh----hccC--Ce---eEeeHHHhcCCCCEE
Confidence            58899999999999999999998 47896 999999987542 2211111    1111  01   122445555789999


Q ss_pred             EEccCCChhhh-hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          241 SLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       241 vl~lPlt~~t~-~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +.++|..-... ..+..   +.++++.+++|+.-.+ ..+. |++..++
T Consensus       192 InaTp~gm~~~~~~l~~---~~l~~~~~V~DlvY~P-~~T~-ll~~A~~  235 (281)
T 3o8q_A          192 INSTSASLDGELPAIDP---VIFSSRSVCYDMMYGK-GYTV-FNQWARQ  235 (281)
T ss_dssp             EECSCCCC----CSCCG---GGEEEEEEEEESCCCS-SCCH-HHHHHHH
T ss_pred             EEcCcCCCCCCCCCCCH---HHhCcCCEEEEecCCC-ccCH-HHHHHHH
Confidence            99999753221 12332   3467788888887654 3444 4344443

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.54  E-value=0.00029  Score=66.33  Aligned_cols=99  Identities=12%  Similarity=0.070  Sum_probs=62.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCC
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READ  238 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aD  238 (386)
                      .++.|+++.|+|.|.+|++++..| ...|+ +|++++|+.... ++..+.+       .......   .+++++- .++|
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~-------~~~~~~~---~~~~~l~~~~~D  183 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPF-LQAGPSELVIANRDMAKA-LALRNEL-------DHSRLRI---SRYEALEGQSFD  183 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTCCSEEEEECSCHHHH-HHHHHHH-------CCTTEEE---ECSGGGTTCCCS
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHh-------ccCCeeE---eeHHHhcccCCC
Confidence            358999999999999999999998 46896 999999987542 2211111       1001111   2333332 6899


Q ss_pred             EEEEccCCChhhh-hcccHHHHhcCCCCcEEEEcCCC
Q 016620          239 VISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       239 iVvl~lPlt~~t~-~li~~~~~~~mk~gailIN~aRg  274 (386)
                      +|+.++|..-... ..+..   +.++++.+++|+.-.
T Consensus       184 ivInaTp~gm~~~~~~i~~---~~l~~~~~V~DlvY~  217 (272)
T 3pwz_A          184 IVVNATSASLTADLPPLPA---DVLGEAALAYELAYG  217 (272)
T ss_dssp             EEEECSSGGGGTCCCCCCG---GGGTTCSEEEESSCS
T ss_pred             EEEECCCCCCCCCCCCCCH---HHhCcCCEEEEeecC
Confidence            9999999632211 12332   234667777777554

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.54  E-value=0.001  Score=62.90  Aligned_cols=106  Identities=19%  Similarity=0.223  Sum_probs=66.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|+++.|+|.|.+|++++..| ...|+ +|++++|+.... ++..+.+..   .............++++.+.++|+|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~~~---~~~~~~i~~~~~~~l~~~l~~~DiV  198 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVINN---AVGREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSSHHHH-HHHHHHHHH---HHTSCCEEEECSTTHHHHHHHSSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEECCHHHH-HHHHHHHHh---hcCCceEEEcCHHHHHHHHhcCCEE
Confidence            58899999999999999999998 47898 799999987542 111111110   0000111111234788889999999


Q ss_pred             EEccCCChhhh--hcccHHHHhcCCCCcEEEEcCCCc
Q 016620          241 SLHPVLDKTTY--HLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       241 vl~lPlt~~t~--~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +.++|..-...  ..+.   .+.++++.+++|+.-.+
T Consensus       199 InaTp~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P  232 (283)
T 3jyo_A          199 VNATPMGMPAHPGTAFD---VSCLTKDHWVGDVVYMP  232 (283)
T ss_dssp             EECSSTTSTTSCSCSSC---GGGCCTTCEEEECCCSS
T ss_pred             EECCCCCCCCCCCCCCC---HHHhCCCCEEEEecCCC
Confidence            99999632111  1122   23356666667765543

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.52  E-value=0.00033  Score=66.47  Aligned_cols=77  Identities=21%  Similarity=0.289  Sum_probs=63.6

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+++||++.|||-+. +|+++|.+| ..-+++|..+..+                            ..+|.+..++||+
T Consensus       175 i~l~Gk~vvViGRS~iVGkPla~LL-~~~~ATVTi~Hs~----------------------------T~dl~~~~~~ADI  225 (303)
T 4b4u_A          175 IEIAGKHAVVVGRSAILGKPMAMML-LQANATVTICHSR----------------------------TQNLPELVKQADI  225 (303)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTT----------------------------CSSHHHHHHTCSE
T ss_pred             CCCCCCEEEEEeccccccchHHHHH-HhcCCEEEEecCC----------------------------CCCHHHHhhcCCe
Confidence            579999999999865 599999988 5789999887542                            2478899999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+.++..    .++|..+.   .|+|+++||+|-
T Consensus       226 vV~A~G~----p~~i~~d~---vk~GavVIDVGi  252 (303)
T 4b4u_A          226 IVGAVGK----AELIQKDW---IKQGAVVVDAGF  252 (303)
T ss_dssp             EEECSCS----TTCBCGGG---SCTTCEEEECCC
T ss_pred             EEeccCC----CCcccccc---ccCCCEEEEece
Confidence            9999863    56777754   689999999985

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.51  E-value=0.00017  Score=67.71  Aligned_cols=105  Identities=15%  Similarity=0.167  Sum_probs=61.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (386)
                      .+.|++++|+|.|.+|++++..|+ ..|.+|++++|+.... ++..+.+    ...+  ..   ...+++++.+ ++|+|
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L~-~~G~~v~v~~R~~~~a-~~l~~~~----~~~~--~~---~~~~~~~~~~~~~Div  184 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPLL-QAQQNIVLANRTFSKT-KELAERF----QPYG--NI---QAVSMDSIPLQTYDLV  184 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHH-HTTCEEEEEESSHHHH-HHHHHHH----GGGS--CE---EEEEGGGCCCSCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHHHHc----cccC--Ce---EEeeHHHhccCCCCEE
Confidence            478899999999999999999984 6789999999986532 2221111    1000  00   0123333333 89999


Q ss_pred             EEccCCChhhh-hcccHHHHhcCCCCcEEEEcCCCcccCHH
Q 016620          241 SLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEV  280 (386)
Q Consensus       241 vl~lPlt~~t~-~li~~~~~~~mk~gailIN~aRg~~vde~  280 (386)
                      +.++|...... .-+..+.   ++++.+++|+...+..+.+
T Consensus       185 In~t~~~~~~~~~~i~~~~---l~~~~~v~D~~y~p~~~t~  222 (272)
T 1p77_A          185 INATSAGLSGGTASVDAEI---LKLGSAFYDMQYAKGTDTP  222 (272)
T ss_dssp             EECCCC-------CCCHHH---HHHCSCEEESCCCTTSCCH
T ss_pred             EECCCCCCCCCCCCCCHHH---cCCCCEEEEeeCCCCcCCH
Confidence            99999643210 0123232   2456666666664433344

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.50  E-value=0.00031  Score=58.57  Aligned_cols=95  Identities=14%  Similarity=0.102  Sum_probs=56.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhhCCE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDi  239 (386)
                      .++++.|+|+|.+|+.+|+.| ...|.+|+++|+++.....         +...+.. .......+.+.+    +.++|+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L-~~~g~~V~~id~~~~~~~~---------~~~~~~~-~~~gd~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVREL-TAAGKKVLAVDKSKEKIEL---------LEDEGFD-AVIADPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHHHH---------HHHTTCE-EEECCTTCHHHHHHSCCTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHHHH---------HHHCCCc-EEECCCCCHHHHHhCCcccCCE
Confidence            457899999999999999998 5789999999997654211         1111111 001112232222    468999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      |++++|.. + .++.-....+.+....+++-+
T Consensus        74 vi~~~~~~-~-~n~~~~~~a~~~~~~~iia~~  103 (141)
T 3llv_A           74 VLITGSDD-E-FNLKILKALRSVSDVYAIVRV  103 (141)
T ss_dssp             EEECCSCH-H-HHHHHHHHHHHHCCCCEEEEE
T ss_pred             EEEecCCH-H-HHHHHHHHHHHhCCceEEEEE
Confidence            99999943 2 333334444445534444433

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.50  E-value=0.0006  Score=72.75  Aligned_cols=147  Identities=17%  Similarity=0.174  Sum_probs=91.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhh---hhhhhcC--CCCccccccCCHHHHhhhC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYG---QFLKANG--EQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~---~~~~~~~--~~~~~~~~~~~l~ell~~a  237 (386)
                      ++|||||.|.||..||..++ ..|.+|+.+|++.......  ... .+.   .......  ..........+++ .+++|
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a-~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~a  394 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTK-ELSTV  394 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGG-GGGSC
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHH-HHhhC
Confidence            68999999999999999875 6899999999987542211  111 000   0011111  1111122234444 47899


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEE
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIV  317 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvil  317 (386)
                      |+|+=++|-+-+.+.-+-++.-+.++++++|-.-+++  +....|.++++ ..-..+++..|.+-|  .-||.   -|+-
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfnP~~--~m~LV---Evi~  466 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFSPAH--VMRLL---EVIP  466 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCSSTT--TCCEE---EEEE
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccCCCC--CCceE---EEec
Confidence            9999999988887776667777789999988543332  34456666654 345677777775322  12333   3676


Q ss_pred             cCCCC
Q 016620          318 VPHIA  322 (386)
Q Consensus       318 TPHia  322 (386)
                      +|+++
T Consensus       467 g~~Ts  471 (742)
T 3zwc_A          467 SRYSS  471 (742)
T ss_dssp             CSSCC
T ss_pred             CCCCC
Confidence            77654

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.49  E-value=0.00065  Score=65.27  Aligned_cols=107  Identities=13%  Similarity=0.137  Sum_probs=65.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV  233 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el  233 (386)
                      .++.|+++.|+|.|.+|++++..| ...|+ +|++++|+   ... .++..+.+    ..............+   +.+.
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L-~~~Ga~~V~i~nR~~~~~~~-a~~la~~~----~~~~~~~~~~~~~~~~~~l~~~  223 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQA-ALDGVKEISIFNRKDDFYAN-AEKTVEKI----NSKTDCKAQLFDIEDHEQLRKE  223 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHH-HHHHHHHH----HHHSSCEEEEEETTCHHHHHHH
T ss_pred             CCccCCEEEEECCChHHHHHHHHH-HHCCCCEEEEEECCCchHHH-HHHHHHHh----hhhcCCceEEeccchHHHHHhh
Confidence            358999999999999999999998 47898 89999998   432 22211111    111100111112223   5567


Q ss_pred             hhhCCEEEEccCCCh--hh-hhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          234 LREADVISLHPVLDK--TT-YHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       234 l~~aDiVvl~lPlt~--~t-~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +.++|+|+.++|..=  .. ...+.  ....++++.+++|+.-.+
T Consensus       224 l~~aDiIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P  266 (315)
T 3tnl_A          224 IAESVIFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKP  266 (315)
T ss_dssp             HHTCSEEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSS
T ss_pred             hcCCCEEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCC
Confidence            889999999999631  11 11120  123456777777776544

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.42  E-value=0.00027  Score=67.71  Aligned_cols=117  Identities=11%  Similarity=0.160  Sum_probs=66.8

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .++|+|||.|.||..+|..|+ ..|. +|..||++.........+.... ..... .........++ +.++.||+|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la-~~g~~~V~l~D~~~~~~~~~~~~l~~~-~~~~~-~~~~i~~t~d~-~a~~~aDiVi~a   79 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVG-KDNLADVVLFDIAEGIPQGKALDITHS-MVMFG-STSKVIGTDDY-ADISGSDVVIIT   79 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHHHHHH-HHHHT-CCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCCchHHHHHHHHHHhh-hhhcC-CCcEEEECCCH-HHhCCCCEEEEe
Confidence            468999999999999999885 4466 8999998764322111110000 00000 11122223566 678999999999


Q ss_pred             cCCCh-----------hhhhcc---cHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 016620          244 PVLDK-----------TTYHLI---NKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (386)
Q Consensus       244 lPlt~-----------~t~~li---~~~~~~~mk~gailIN~aRg~~vde~aL~~aL  286 (386)
                      ++...           ++..++   -++. ....+++++++++-..-+....+.+..
T Consensus        80 vg~p~~~g~~r~d~~~~~~~i~~~i~~~i-~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           80 ASIPGRPKDDRSELLFGNARILDSVAEGV-KKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             CCCSSCCSSCGGGGHHHHHHHHHHHHHHH-HHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcHHHHHHhhHHHHHHHHHHH-HHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            84211           111111   1222 223468999999875544445555544

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.41  E-value=0.00039  Score=66.26  Aligned_cols=107  Identities=17%  Similarity=0.131  Sum_probs=65.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      .+|||||+|.||+.+++.+++.-+.++ .++|++.... +.           ....   ...+.+++++++  ++|+|++
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~-~~-----------~~~~---~~~~~~~~~~l~~~~~D~V~i   75 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNL-AL-----------VPPG---CVIESDWRSVVSAPEVEAVII   75 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHH-TT-----------CCTT---CEEESSTHHHHTCTTCCEEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HH-----------HHhh---CcccCCHHHHhhCCCCCEEEE
Confidence            479999999999999998753336775 4888876532 10           0111   123568899986  7999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++|...  ..   +-....++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        76 ~tp~~~--h~---~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~  122 (315)
T 3c1a_A           76 ATPPAT--HA---EITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGVM  122 (315)
T ss_dssp             ESCGGG--HH---HHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCCC
T ss_pred             eCChHH--HH---HHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCCE
Confidence            999422  21   11223345564 55552 222344556777777665443

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.41  E-value=0.00061  Score=64.95  Aligned_cols=120  Identities=13%  Similarity=0.148  Sum_probs=72.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCc-cccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|||.|.||..+|..|+ ..|.+|.+|+|+......+    .+-.... .+.... ......+.++ +..+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~~~i~~----~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vila   76 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQ-RSGEDVHFLLRRDYEAIAG----NGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVG   76 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHH-HTSCCEEEECSTTHHHHHH----TCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEEcCcHHHHHh----CCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEe
Confidence            57999999999999999985 5688999999875221111    0000000 000000 0111245555 6789999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga  294 (386)
                      +|.. ++...+ ++.-..+++++++|.+.-| +-.++.|.+.+...++.++
T Consensus        77 vk~~-~~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           77 LKTF-ANSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             CCGG-GGGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred             cCCC-CcHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence            9953 333332 3444567889999998776 2235667776654444443

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.41  E-value=0.00047  Score=66.49  Aligned_cols=69  Identities=26%  Similarity=0.388  Sum_probs=50.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      .+|||||+|.||+..++.|++.-++++. ++|++.... +.+.+.       .+     ...+.+++++++  ++|+|++
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~-------~g-----~~~~~~~~~~l~~~~~D~V~i   71 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGA-QRLAEA-------NG-----AEAVASPDEVFARDDIDGIVI   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHT-------TT-----CEEESSHHHHTTCSCCCEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHH-------cC-----CceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987543478876 688876542 221111       11     224579999998  8999999


Q ss_pred             ccCCC
Q 016620          243 HPVLD  247 (386)
Q Consensus       243 ~lPlt  247 (386)
                      |+|..
T Consensus        72 ~tp~~   76 (344)
T 3euw_A           72 GSPTS   76 (344)
T ss_dssp             CSCGG
T ss_pred             eCCch
Confidence            99953

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.39  E-value=0.001  Score=66.78  Aligned_cols=148  Identities=14%  Similarity=0.069  Sum_probs=82.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLR  235 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~  235 (386)
                      +-.+|+|||+|-+|..+|..|+ ..|.+|+++|.+.... +.....        ..+.+++.... -+....++.++.++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A-~~G~~V~g~Did~~kV-~~ln~G~~pi~Epgl~ell~~~~~~-g~l~~tt~~~~ai~   96 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFA-LLGHRVVGYDVNPSIV-ERLRAGRPHIYEPGLEEALGRALSS-GRLSFAESAEEAVA   96 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHHHT-TCEEECSSHHHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHH-hCCCcEEEEECCHHHH-HHHHCCCCCCCCCCHHHHHHHHHHc-CCeeEEcCHHHHHh
Confidence            3458999999999999999985 5789999999886542 111000        00001000000 01123467889999


Q ss_pred             hCCEEEEccCCChhhh-------hccc--HHHHhcC---CCCcEEEEcCCCcccCHHHHH-HHHHcCCcceEEee-ccCC
Q 016620          236 EADVISLHPVLDKTTY-------HLIN--KERLATM---KKEAILVNCSRGPVIDEVALV-EHLKQNPMFRVGLD-VFED  301 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~-------~li~--~~~~~~m---k~gailIN~aRg~~vde~aL~-~aL~~g~i~gaalD-V~~~  301 (386)
                      .||++++|+|. |...       .+..  +..-+.+   .+|.++|.-|.-.+=-.+.+. ..+++. -.+.-++ ++.+
T Consensus        97 ~ad~~~I~VpT-P~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~-~~~~~f~v~~~P  174 (444)
T 3vtf_A           97 ATDATFIAVGT-PPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEE-AGGVKFSVASNP  174 (444)
T ss_dssp             TSSEEEECCCC-CBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTT-TTTCCCEEEECC
T ss_pred             cCCceEEEecC-CCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHh-CCCCCceeecCc
Confidence            99999999883 3211       1111  2222334   368899998886664444443 334432 2233333 2456


Q ss_pred             CCCCCC----CCCCCCCeE
Q 016620          302 EPYMKP----GLSEMKNAI  316 (386)
Q Consensus       302 EP~~~~----~L~~~~nvi  316 (386)
                      |-+...    .+...++|+
T Consensus       175 Erl~eG~a~~d~~~~~riV  193 (444)
T 3vtf_A          175 EFLREGSALEDFFKPDRIV  193 (444)
T ss_dssp             CCCCTTSHHHHHHSCSCEE
T ss_pred             ccccCCccccccccCCcEE
Confidence            654221    244455554

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.37  E-value=0.00076  Score=65.15  Aligned_cols=81  Identities=17%  Similarity=0.249  Sum_probs=51.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .++|+|||.|.+|..+|..|+ .-|. +|..||++.........+.. ....... .+.......++++.+++||+|+++
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la-~~g~~~V~L~D~~~~~~~~~~~~l~-~~~~~~~-~~~~i~~t~d~~ea~~~aDiVi~a   85 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMPEGKALDLS-HVTSVVD-TNVSVRAEYSYEAALTGADCVIVT   85 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHHHHHHHHHH-HHHHHTT-CCCCEEEECSHHHHHTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECChhHHHHHHHHHH-hhhhccC-CCCEEEEeCCHHHHhCCCCEEEEc
Confidence            368999999999999999885 3455 89999987643221111110 0011111 122233346888889999999999


Q ss_pred             c--CCCh
Q 016620          244 P--VLDK  248 (386)
Q Consensus       244 l--Plt~  248 (386)
                      .  |..+
T Consensus        86 ~g~p~~~   92 (331)
T 1pzg_A           86 AGLTKVP   92 (331)
T ss_dssp             CSCSSCT
T ss_pred             cCCCCCC
Confidence            8  6543

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.34  E-value=0.00089  Score=63.30  Aligned_cols=108  Identities=15%  Similarity=0.114  Sum_probs=68.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++.|+++.|+|.|.+|++++..| ...|+ +|++++|+.... ++.        ..    ........++++ + ++|+|
T Consensus       119 ~~~~k~vlvlGaGGaaraia~~L-~~~G~~~v~v~nRt~~ka-~~L--------a~----~~~~~~~~~l~~-l-~~Div  182 (282)
T 3fbt_A          119 EIKNNICVVLGSGGAARAVLQYL-KDNFAKDIYVVTRNPEKT-SEI--------YG----EFKVISYDELSN-L-KGDVI  182 (282)
T ss_dssp             CCTTSEEEEECSSTTHHHHHHHH-HHTTCSEEEEEESCHHHH-HHH--------CT----TSEEEEHHHHTT-C-CCSEE
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHH--------HH----hcCcccHHHHHh-c-cCCEE
Confidence            57899999999999999999998 57898 899999987542 111        00    011111223444 4 89999


Q ss_pred             EEccCCC--hhhh-hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          241 SLHPVLD--KTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       241 vl~lPlt--~~t~-~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      +.++|..  +... ..+..+.   ++++.+++|+.-.+. .+.=|..|-+.|
T Consensus       183 InaTp~Gm~~~~~~~pi~~~~---l~~~~~v~DlvY~P~-~T~ll~~A~~~G  230 (282)
T 3fbt_A          183 INCTPKGMYPKEGESPVDKEV---VAKFSSAVDLIYNPV-ETLFLKYARESG  230 (282)
T ss_dssp             EECSSTTSTTSTTCCSSCHHH---HTTCSEEEESCCSSS-SCHHHHHHHHTT
T ss_pred             EECCccCccCCCccCCCCHHH---cCCCCEEEEEeeCCC-CCHHHHHHHHCc
Confidence            9999963  2111 1245444   357888888865442 334333444444

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.34  E-value=0.00031  Score=70.38  Aligned_cols=162  Identities=18%  Similarity=0.147  Sum_probs=98.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc---EEEEEc----CC----hhhH---HHHHHhhhhhhhhhcCCCCccccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYD----LY----QATR---LEKFVTAYGQFLKANGEQPVTWKR  226 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~---~V~~~d----~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  226 (386)
                      ..+.++++.|+|.|..|+.+++.| ...|+   +|+++|    |+    ....   +..+...+    ...  ... ...
T Consensus       182 ~~l~~~rvlvlGAGgAg~aia~~L-~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~----a~~--~~~-~~~  253 (439)
T 2dvm_A          182 KKISEITLALFGAGAAGFATLRIL-TEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWL----LKK--TNG-ENI  253 (439)
T ss_dssp             CCTTTCCEEEECCSHHHHHHHHHH-HHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHH----HTT--SCT-TCC
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHH----hhc--ccc-ccc
Confidence            568899999999999999999998 57897   799999    76    2211   11100000    000  000 001


Q ss_pred             cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe-eccCCCCCC
Q 016620          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL-DVFEDEPYM  305 (386)
Q Consensus       227 ~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaal-DV~~~EP~~  305 (386)
                      ..++.+.+.++|+|+.+.|..+   +++.++.++.|+++.++++++...  .|.-+.+|.+.|.   +.+ +-..--   
T Consensus       254 ~~~L~e~l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP~--~t~~~~~A~~~G~---~ivatG~~ml---  322 (439)
T 2dvm_A          254 EGGPQEALKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANPV--PEILPEEAKKAGA---RIVATGRSDY---  322 (439)
T ss_dssp             CSSHHHHHTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSSS--CSSCHHHHHHHTC---SEECBSCSSS---
T ss_pred             cccHHHHhccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCCC--CcchHHHHHHcCC---eEEcCCCchh---
Confidence            3578999999999999998522   456667788899999999995433  4555566666553   222 332211   


Q ss_pred             CCCCCCCCCeEEcCCCCC------CcHHHHHHHHHHHHHHHHHHHc
Q 016620          306 KPGLSEMKNAIVVPHIAS------ASKWTREGMATLAALNVLGKIK  345 (386)
Q Consensus       306 ~~~L~~~~nvilTPHia~------~t~~~~~~~~~~~~~ni~~~~~  345 (386)
                         ..+..|+++-|-++-      .+ ...+.|...+++-|..+..
T Consensus       323 ---~~Q~nn~~~FPGi~~g~l~~~a~-~i~~~m~~aaa~ala~~~~  364 (439)
T 2dvm_A          323 ---PNQINNLLGFPGIFRGALDVRAR-TITDSMIIAAAKAIASIVE  364 (439)
T ss_dssp             ---SSBCCGGGTHHHHHHHHHHTTCS-CCCHHHHHHHHHHHHHTSS
T ss_pred             ---HHHHHHHhcccCchHHHHhcCCC-CCCHHHHHHHHHHHHhhCc
Confidence               245567777775411      11 0124455555555655553

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.33  E-value=0.0011  Score=63.43  Aligned_cols=81  Identities=17%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC---hhhHHHHHHhhhhhhhhhcCCCCccccccCCH---HHH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV  233 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el  233 (386)
                      .++.|+++.|+|.|.+|++++..| ...|+ +|++++|+   ... .++..+.+    ..............++   .+.
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L-~~~G~~~v~v~nRt~~~~~~-a~~la~~~----~~~~~~~v~~~~~~~l~~~~~~  217 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQA-AIEGIKEIKLFNRKDDFFEK-AVAFAKRV----NENTDCVVTVTDLADQHAFTEA  217 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTHHHH-HHHHHHHH----HHHSSCEEEEEETTCHHHHHHH
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHH-HHcCCCEEEEEECCCchHHH-HHHHHHHh----hhccCcceEEechHhhhhhHhh
Confidence            358899999999999999999998 57898 89999998   432 12111111    1110001111223454   567


Q ss_pred             hhhCCEEEEccCCC
Q 016620          234 LREADVISLHPVLD  247 (386)
Q Consensus       234 l~~aDiVvl~lPlt  247 (386)
                      +.++|+|+.++|..
T Consensus       218 l~~~DiIINaTp~G  231 (312)
T 3t4e_A          218 LASADILTNGTKVG  231 (312)
T ss_dssp             HHHCSEEEECSSTT
T ss_pred             ccCceEEEECCcCC
Confidence            88999999999963

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.32  E-value=0.0012  Score=62.62  Aligned_cols=108  Identities=19%  Similarity=0.311  Sum_probs=67.9

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|||||+|.||+. .++.+++.-++++. ++|++.... +.+.+.|       +.     ..+.++++++++.|+|++|
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------~~-----~~~~~~~~ll~~~D~V~i~   73 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKR-EKICSDY-------RI-----MPFDSIESLAKKCDCIFLH   73 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHH-HHHHHHH-------TC-----CBCSCHHHHHTTCSEEEEC
T ss_pred             CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHc-------CC-----CCcCCHHHHHhcCCEEEEe
Confidence            58999999999996 88877433577877 789876542 2222211       21     1257899999999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHcCCc
Q 016620          244 PVLDKTTYHLINKERLATMKKEA-ILVN-CSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~ga-ilIN-~aRg~~vde~aL~~aL~~g~i  291 (386)
                      +|....  .-+-...   ++.|. +++. -.--.+-+.+.|.++.++..+
T Consensus        74 tp~~~h--~~~~~~a---l~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~  118 (308)
T 3uuw_A           74 SSTETH--YEIIKIL---LNLGVHVYVDKPLASTVSQGEELIELSTKKNL  118 (308)
T ss_dssp             CCGGGH--HHHHHHH---HHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred             CCcHhH--HHHHHHH---HHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence            995322  1111223   33443 5554 233345566778887776543

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.00053  Score=67.77  Aligned_cols=107  Identities=15%  Similarity=0.237  Sum_probs=67.0

Q ss_pred             eEEEEecChhHHHHHHHHHhc-------CCcEEEEEcCChhhH---HHHHHhhhhh--hhhhcCCCCccccccCCHHHHh
Q 016620          167 TVGVIGAGRIGSAYARMMVEG-------FKMNLIYYDLYQATR---LEKFVTAYGQ--FLKANGEQPVTWKRASSMDEVL  234 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~-------fg~~V~~~d~~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~ell  234 (386)
                      +|+|||.|.-|.++|..|++.       |+.+|..|.|+....   ..+......+  ..-..-..+.......++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            799999999999999988642       334688887654311   1111100000  0000112223334457899999


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +.||+|++++|. ...+.+ -++.-..++++..+|+++-|=
T Consensus       116 ~~ad~ii~avPs-~~~r~~-l~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIPH-QFLPRI-CSQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSCG-GGHHHH-HHHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECCh-hhhHHH-HHHhccccCCCceeEEecccc
Confidence            999999999995 233333 344556678999999998873

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.27  E-value=0.0013  Score=63.10  Aligned_cols=69  Identities=12%  Similarity=0.154  Sum_probs=47.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      .+|||||+|.||+..++.+++.-++++. ++|++..... .+.       +..+   . ...+.++++++.  +.|+|++
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~-~~a-------~~~~---~-~~~~~~~~~ll~~~~~D~V~i   73 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQ-AFA-------NKYH---L-PKAYDKLEDMLADESIDVIYV   73 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTC-C----------CCC---C-SCEESCHHHHHTCTTCCEEEE
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH-HHH-------HHcC---C-CcccCCHHHHhcCCCCCEEEE
Confidence            4799999999999999887544467755 6687764311 100       0111   1 113579999998  7999999


Q ss_pred             ccCC
Q 016620          243 HPVL  246 (386)
Q Consensus       243 ~lPl  246 (386)
                      ++|.
T Consensus        74 ~tp~   77 (329)
T 3evn_A           74 ATIN   77 (329)
T ss_dssp             CSCG
T ss_pred             CCCc
Confidence            9995

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.26  E-value=0.00056  Score=57.96  Aligned_cols=100  Identities=9%  Similarity=0.014  Sum_probs=58.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc---CCHHHH-hhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEV-LREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~el-l~~aDiV  240 (386)
                      .+++.|+|+|.+|+.+++.| ...|.+|.++|++.....+.....+     ..+.. ......   ..++++ +.++|.|
T Consensus         3 ~~~vlI~G~G~vG~~la~~L-~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~-~i~gd~~~~~~l~~a~i~~ad~v   75 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQRL-----GDNAD-VIPGDSNDSSVLKKAGIDRCRAI   75 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHH-----CTTCE-EEESCTTSHHHHHHHTTTTCSEE
T ss_pred             CCcEEEECCCHHHHHHHHHH-HHCCCCEEEEECCChHHHHHHHHhh-----cCCCe-EEEcCCCCHHHHHHcChhhCCEE
Confidence            46799999999999999998 5789999999987432111110000     01100 000011   234444 7899999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +++++....  ++.-....+.+.+...+|...+
T Consensus        76 i~~~~~d~~--n~~~~~~a~~~~~~~~ii~~~~  106 (153)
T 1id1_A           76 LALSDNDAD--NAFVVLSAKDMSSDVKTVLAVS  106 (153)
T ss_dssp             EECSSCHHH--HHHHHHHHHHHTSSSCEEEECS
T ss_pred             EEecCChHH--HHHHHHHHHHHCCCCEEEEEEC
Confidence            999986433  3333445555644444444333

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.25  E-value=0.0015  Score=62.30  Aligned_cols=110  Identities=15%  Similarity=0.199  Sum_probs=68.2

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|||||+|.||+. +++.+++.-++++. ++|++.... +.+.+.+       +..     .+.+++++..++|+|+++
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~~~~~-------g~~-----~~~~~~~l~~~~D~V~i~   72 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW-------RIP-----YADSLSSLAASCDAVFVH   72 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH-------TCC-----BCSSHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHc-------CCC-----ccCcHHHhhcCCCEEEEe
Confidence            47999999999997 88877433478876 888876542 1211111       211     246777776789999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcce
Q 016620          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMFR  293 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~i~g  293 (386)
                      +|.... .    +-....++.|. +++.- .-..+-+.+.|.++.++..+..
T Consensus        73 tp~~~h-~----~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~  119 (319)
T 1tlt_A           73 SSTASH-F----DVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTL  119 (319)
T ss_dssp             SCTTHH-H----HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCchhH-H----HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            995332 1    11223345564 66652 2334456677888887765443

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.24  E-value=0.0013  Score=62.83  Aligned_cols=107  Identities=16%  Similarity=0.245  Sum_probs=63.4

Q ss_pred             eEEEEecChhHHHH-HHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          167 TVGVIGAGRIGSAY-ARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       167 ~vgIvG~G~IG~~i-A~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      +|||||+|.||+.+ ++.+++ -+.++. ++|++.... +.+.+.       .+..    ..+.+++++++  ++|+|++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~-~~~~~~-------~g~~----~~~~~~~~~l~~~~~D~V~i   68 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERG-AAYATE-------NGIG----KSVTSVEELVGDPDVDAVYV   68 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHH-HHHHHH-------TTCS----CCBSCHHHHHTCTTCCEEEE
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHH-HHHHHH-------cCCC----cccCCHHHHhcCCCCCEEEE
Confidence            79999999999998 777755 778865 678876542 221111       1111    13468999987  4999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~i  291 (386)
                      ++|...  ..   +-....++.|. +++.- .-...-+.+.|.++.++..+
T Consensus        69 ~tp~~~--h~---~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~  114 (332)
T 2glx_A           69 STTNEL--HR---EQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV  114 (332)
T ss_dssp             CSCGGG--HH---HHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred             eCChhH--hH---HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence            999432  11   11222344554 44432 12233444556666655433

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.22  E-value=0.0019  Score=61.90  Aligned_cols=68  Identities=25%  Similarity=0.427  Sum_probs=49.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      .+|||||+|.||+..++.+.+.-++++. ++|++.... +.+.+.       .+     .. +.+++++++  +.|+|++
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~-------~~-----~~-~~~~~~~l~~~~~D~V~i   69 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAA-EAIAGA-------YG-----CE-VRTIDAIEAAADIDAVVI   69 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHH-------TT-----CE-ECCHHHHHHCTTCCEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHH-HHHHHH-------hC-----CC-cCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987543478877 688876542 221111       11     12 578999998  8999999


Q ss_pred             ccCCC
Q 016620          243 HPVLD  247 (386)
Q Consensus       243 ~lPlt  247 (386)
                      |+|..
T Consensus        70 ~tp~~   74 (331)
T 4hkt_A           70 CTPTD   74 (331)
T ss_dssp             CSCGG
T ss_pred             eCCch
Confidence            99953

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.22  E-value=0.00082  Score=56.73  Aligned_cols=104  Identities=13%  Similarity=0.132  Sum_probs=69.2

Q ss_pred             CCCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~----G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .-++|+|||.    |.+|..+++.| +..|.+|+..++.....               ..  .+...+.+++|+-...|+
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l-~~~G~~v~~vnp~~~~~---------------~i--~G~~~~~sl~el~~~vDl   73 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE---------------EL--FGEEAVASLLDLKEPVDI   73 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS---------------EE--TTEECBSSGGGCCSCCSE
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHH-HHCCCEEEEeCCCcccC---------------cC--CCEEecCCHHHCCCCCCE
Confidence            3468999999    89999999998 67888877777642110               00  112235678888888999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      +++++|. +....++ ++..+. ..+.++++.+-.    ++++.+.+++..+.
T Consensus        74 avi~vp~-~~~~~v~-~~~~~~-gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           74 LDVFRPP-SALMDHL-PEVLAL-RPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             EEECSCH-HHHTTTH-HHHHHH-CCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             EEEEeCH-HHHHHHH-HHHHHc-CCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence            9999996 5555665 344443 334566654332    57788888766543

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.19  E-value=0.002  Score=61.85  Aligned_cols=70  Identities=11%  Similarity=0.136  Sum_probs=49.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      .+|||||+|.||+..++.+++.-++++. ++|++.... +.+.+.|       +..    ..+.++++++.  ++|+|++
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~~~----~~~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENA-QKMAKEL-------AIP----VAYGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHH-HHHHHHT-------TCC----CCBSSHHHHHHCTTCSEEEE
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHHc-------CCC----ceeCCHHHHhcCCCCCEEEE
Confidence            5799999999999999988543477876 678876542 2222211       111    23578999998  8999999


Q ss_pred             ccCCC
Q 016620          243 HPVLD  247 (386)
Q Consensus       243 ~lPlt  247 (386)
                      |+|..
T Consensus        74 ~tp~~   78 (330)
T 3e9m_A           74 PTYNQ   78 (330)
T ss_dssp             CCCGG
T ss_pred             cCCCH
Confidence            99954

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.19  E-value=0.00079  Score=61.46  Aligned_cols=98  Identities=21%  Similarity=0.180  Sum_probs=62.7

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      ..-.+.|++|.|||.|.+|..-++.| ...|++|+++++...+......+        .+.  ..+....--++.+..+|
T Consensus        25 ifl~L~gk~VLVVGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~l~~--------~~~--i~~i~~~~~~~dL~~ad   93 (223)
T 3dfz_A           25 VMLDLKGRSVLVVGGGTIATRRIKGF-LQEGAAITVVAPTVSAEINEWEA--------KGQ--LRVKRKKVGEEDLLNVF   93 (223)
T ss_dssp             EEECCTTCCEEEECCSHHHHHHHHHH-GGGCCCEEEECSSCCHHHHHHHH--------TTS--CEEECSCCCGGGSSSCS
T ss_pred             cEEEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHH--------cCC--cEEEECCCCHhHhCCCC
Confidence            33579999999999999999999998 57899999999876654433221        111  11111111134567899


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|+.++... +.    |.......+ --++||++.
T Consensus        94 LVIaAT~d~-~~----N~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A           94 FIVVATNDQ-AV----NKFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             EEEECCCCT-HH----HHHHHHHSC-TTCEEEC--
T ss_pred             EEEECCCCH-HH----HHHHHHHHh-CCCEEEEeC
Confidence            999887543 32    333444455 457788744

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.17  E-value=0.00063  Score=64.83  Aligned_cols=104  Identities=13%  Similarity=0.119  Sum_probs=60.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .+|||||+|.||+.+++.+++.-++++. ++|+++....            ..+   .......++.+. .++|+|++|+
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~------------~~g---~~~~~~~~l~~~-~~~DvViiat   73 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVP------------FEL---QPFRVVSDIEQL-ESVDVALVCS   73 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------------------CC---TTSCEESSGGGS-SSCCEEEECS
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHH------------HcC---CCcCCHHHHHhC-CCCCEEEECC
Confidence            4799999999999999987544578887 6888764311            111   112224455555 7899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCC--C-cccCHHHHHHHHHcCC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSR--G-PVIDEVALVEHLKQNP  290 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aR--g-~~vde~aL~~aL~~g~  290 (386)
                      |...  ..   +-....++.|.-+++..=  + .+.+.+.|.++.++..
T Consensus        74 p~~~--h~---~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           74 PSRE--VE---RTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             CHHH--HH---HHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             Cchh--hH---HHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            9422  21   222334556666665421  2 2344466777766643

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.16  E-value=0.0011  Score=63.28  Aligned_cols=78  Identities=18%  Similarity=0.256  Sum_probs=49.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|+|.|.+|..+|..|++. +|.+|..+|++.........+.... ..... .........++++ ++.||+|++++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~-~~~~~-~~~~i~~t~d~~~-l~~aDvViiav   77 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES-GPVGL-FDTKVTGSNDYAD-TANSDIVIITA   77 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTT-HHHHT-CCCEEEEESCGGG-GTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhh-hhccc-CCcEEEECCCHHH-HCCCCEEEEeC
Confidence            4799999999999999988643 6889999999764321110000000 00000 1112222356766 89999999999


Q ss_pred             CC
Q 016620          245 VL  246 (386)
Q Consensus       245 Pl  246 (386)
                      |.
T Consensus        78 ~~   79 (310)
T 1guz_A           78 GL   79 (310)
T ss_dssp             SC
T ss_pred             CC
Confidence            74

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.15  E-value=0.00099  Score=63.50  Aligned_cols=121  Identities=16%  Similarity=0.166  Sum_probs=66.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ++|+|+|.|.+|..+|..|+ ..|.  +|..+|++.... +.....    +.....  ...... ..+ .+.++.||+|+
T Consensus         1 mkI~VIGaG~vG~~la~~la-~~g~~~eV~L~D~~~~~~-~~~~~~----l~~~~~~~~~~~i~-~~~-~~a~~~aDvVI   72 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALV-LRGSCSELVLVDRDEDRA-QAEAED----IAHAAPVSHGTRVW-HGG-HSELADAQVVI   72 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHH-HHHHHH----HTTSCCTTSCCEEE-EEC-GGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCCHHHH-HHHHHh----hhhhhhhcCCeEEE-ECC-HHHhCCCCEEE
Confidence            47999999999999999874 5577  999999976432 211110    111110  111111 134 35689999999


Q ss_pred             EccCCChh-----------hhhcccH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016620          242 LHPVLDKT-----------TYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (386)
Q Consensus       242 l~lPlt~~-----------t~~li~~--~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga  294 (386)
                      ++.+....           +..++..  +.+....+++++++++-+.=+....+.+.....++.|.
T Consensus        73 i~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           73 LTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             ECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             EcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            99953221           1111110  22233358889988765443333444444444455444

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.14  E-value=0.0009  Score=63.13  Aligned_cols=116  Identities=16%  Similarity=0.213  Sum_probs=69.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  240 (386)
                      ++.|+++.|+|.|.||+++|+.| ...| +|++++|+.... ++..+.+..    .+.... ......++.+.+.++|+|
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L-~~~G-~V~v~~r~~~~~-~~l~~~~~~----~~~~~~~~~~d~~~~~~~~~~~Dil  197 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKA-EALAKEIAE----KLNKKFGEEVKFSGLDVDLDGVDII  197 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHH-HHHHHHHHH----HHTCCHHHHEEEECTTCCCTTCCEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHCC-CEEEEECCHHHH-HHHHHHHhh----hcccccceeEEEeeHHHhhCCCCEE
Confidence            47899999999999999999998 5789 999999986532 221111100    000000 000111234557789999


Q ss_pred             EEccCCChhhh---hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          241 SLHPVLDKTTY---HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       241 vl~lPlt~~t~---~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      +.++|......   ..+.  ..+.++++++++|++... ..+. |.+..++
T Consensus       198 Vn~ag~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p-~~t~-ll~~a~~  244 (287)
T 1nvt_A          198 INATPIGMYPNIDVEPIV--KAEKLREDMVVMDLIYNP-LETV-LLKEAKK  244 (287)
T ss_dssp             EECSCTTCTTCCSSCCSS--CSTTCCSSSEEEECCCSS-SSCH-HHHHHHT
T ss_pred             EECCCCCCCCCCCCCCCC--CHHHcCCCCEEEEeeeCC-ccCH-HHHHHHH
Confidence            99998643211   1120  134578899999998743 2333 4444443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.14  E-value=0.0022  Score=61.65  Aligned_cols=111  Identities=14%  Similarity=0.117  Sum_probs=66.5

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMV-EGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv  241 (386)
                      .+|||||+|.||+..++.++ +.-++++ .++|++.... +.+.+       ..+..    ..+.+++++++  ++|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~-~~~a~-------~~g~~----~~~~~~~~~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQL-EWAKN-------ELGVE----TTYTNYKDMIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHH-HHHHH-------TTCCS----EEESCHHHHHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHH-HHHHH-------HhCCC----cccCCHHHHhcCCCCCEEE
Confidence            47999999999999999874 3357885 5678876542 22111       11110    23468999987  699999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcC-Ccce
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQN-PMFR  293 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g-~i~g  293 (386)
                      +|+|.... .    +-....++.|. +++.- .-..+-+.+.|.++.++. .+.-
T Consensus        77 i~tp~~~h-~----~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~  126 (346)
T 3cea_A           77 IVAPTPFH-P----EMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIF  126 (346)
T ss_dssp             ECSCGGGH-H----HHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCE
T ss_pred             EeCChHhH-H----HHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeE
Confidence            99994321 1    22223345565 44431 112233445577777766 5443

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.13  E-value=0.0011  Score=56.16  Aligned_cols=101  Identities=9%  Similarity=0.090  Sum_probs=68.6

Q ss_pred             CCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       165 g~~vgIvG~----G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      -++|+|||.    |.+|..+++.| +..|.+|+..++....                 ..  +...+.+++|+....|++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l-~~~G~~v~~Vnp~~~~-----------------i~--G~~~y~sl~~l~~~vDlv   81 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEE-----------------VL--GRKCYPSVLDIPDKIEVV   81 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-----------------ET--TEECBSSGGGCSSCCSEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHH-HHCCCEEEEECCCCCe-----------------EC--CeeccCCHHHcCCCCCEE
Confidence            578999999    79999999998 5788888777765321                 01  122356888888889999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++++|. +....++ ++..+ ...+.++++.+  .  .++.+.+.+++..+.
T Consensus        82 vi~vp~-~~~~~vv-~~~~~-~gi~~i~~~~g--~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A           82 DLFVKP-KLTMEYV-EQAIK-KGAKVVWFQYN--T--YNREASKKADEAGLI  126 (144)
T ss_dssp             EECSCH-HHHHHHH-HHHHH-HTCSEEEECTT--C--CCHHHHHHHHHTTCE
T ss_pred             EEEeCH-HHHHHHH-HHHHH-cCCCEEEECCC--c--hHHHHHHHHHHcCCE
Confidence            999996 4455555 33333 23345665533  2  367788888876544

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.13  E-value=0.0021  Score=62.19  Aligned_cols=69  Identities=26%  Similarity=0.404  Sum_probs=49.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC-CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh--hhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--READVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~f-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--~~aDiVv  241 (386)
                      .+|||||+|.||+..++.+ +.. ++++. ++|++.... +.+.+.+       +     ...+.++++++  .+.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~lvav~d~~~~~~-~~~~~~~-------g-----~~~~~~~~~~l~~~~~D~V~   71 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAY-TKSEKLKLVTCYSRTEDKR-EKFGKRY-------N-----CAGDATMEALLAREDVEMVI   71 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEECSSHHHH-HHHHHHH-------T-----CCCCSSHHHHHHCSSCCEEE
T ss_pred             ceEEEEccCHHHHHHHHHH-HhCCCcEEEEEECCCHHHH-HHHHHHc-------C-----CCCcCCHHHHhcCCCCCEEE
Confidence            4799999999999999987 455 88865 778876542 2221111       2     11357899999  5699999


Q ss_pred             EccCCCh
Q 016620          242 LHPVLDK  248 (386)
Q Consensus       242 l~lPlt~  248 (386)
                      +|+|...
T Consensus        72 i~tp~~~   78 (354)
T 3db2_A           72 ITVPNDK   78 (354)
T ss_dssp             ECSCTTS
T ss_pred             EeCChHH
Confidence            9999643

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.11  E-value=0.0019  Score=62.32  Aligned_cols=75  Identities=21%  Similarity=0.395  Sum_probs=47.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.+|..+|..|+ ..|. +|..||++.........+.. ....... .........++ +.+++||+|+++.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la-~~g~~~V~L~Di~~~~l~~~~~~l~-~~~~~~~-~~~~i~~t~d~-~al~~aD~VI~av   90 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLG-QKDLGDVYMFDIIEGVPQGKALDLN-HCMALIG-SPAKIFGENNY-EYLQNSDVVIITA   90 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSTTHHHHHHHHHH-HHHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHHH-hHhhccC-CCCEEEECCCH-HHHCCCCEEEEcC
Confidence            68999999999999999885 4566 89999998643221111100 0011111 11222233566 6789999999998

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.10  E-value=0.002  Score=61.28  Aligned_cols=77  Identities=17%  Similarity=0.199  Sum_probs=47.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|||.|.||..+|..|++ .|  .+|..||++.... +.....+.......+ ...... ..++ +.++.||+|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~-~g~~~~V~l~d~~~~~~-~~~~~~l~~~~~~~~-~~~~~~-~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIA-QGVADDYVFIDANEAKV-KADQIDFQDAMANLE-AHGNIV-INDW-AALADADVVIST   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HTCCSEEEEECSSHHHH-HHHHHHHHHHGGGSS-SCCEEE-ESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCCCEEEEEcCCHHHH-HHHHHHHHhhhhhcC-CCeEEE-eCCH-HHhCCCCEEEEe
Confidence            479999999999999998853 35  6899999986432 111111000000000 011111 2466 678999999999


Q ss_pred             cCCC
Q 016620          244 PVLD  247 (386)
Q Consensus       244 lPlt  247 (386)
                      +|..
T Consensus        77 v~~~   80 (309)
T 1hyh_A           77 LGNI   80 (309)
T ss_dssp             CSCG
T ss_pred             cCCc
Confidence            9863

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.09  E-value=0.0023  Score=62.20  Aligned_cols=68  Identities=19%  Similarity=0.289  Sum_probs=48.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      .+|||||+|.||+..++.+.+.-++++. ++|++.....  ...       ..+     ...+.+++++++  +.|+|++
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~--~a~-------~~g-----~~~~~~~~~ll~~~~~D~V~i   71 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKRE--AAA-------QKG-----LKIYESYEAVLADEKVDAVLI   71 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHH--HHH-------TTT-----CCBCSCHHHHHHCTTCCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH--HHH-------hcC-----CceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433378876 5688765421  111       111     224579999998  7899999


Q ss_pred             ccCCC
Q 016620          243 HPVLD  247 (386)
Q Consensus       243 ~lPlt  247 (386)
                      |+|..
T Consensus        72 ~tp~~   76 (359)
T 3e18_A           72 ATPND   76 (359)
T ss_dssp             CSCGG
T ss_pred             cCCcH
Confidence            99953

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.08  E-value=0.0025  Score=61.35  Aligned_cols=70  Identities=21%  Similarity=0.239  Sum_probs=49.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      .+|||||+|.||+..++.+++.-++++. ++|++.... +.+.+.+       +.    ...+.+++++++  ++|+|++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~~~~~-------~~----~~~~~~~~~ll~~~~~D~V~i   70 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRL-REMKEKL-------GV----EKAYKDPHELIEDPNVDAVLV   70 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHH-HHHHHHH-------TC----SEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHh-------CC----CceeCCHHHHhcCCCCCEEEE
Confidence            3799999999999999987443478876 678876542 2222211       11    113579999998  8999999


Q ss_pred             ccCCC
Q 016620          243 HPVLD  247 (386)
Q Consensus       243 ~lPlt  247 (386)
                      |+|..
T Consensus        71 ~tp~~   75 (344)
T 3ezy_A           71 CSSTN   75 (344)
T ss_dssp             CSCGG
T ss_pred             cCCCc
Confidence            99953

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.01  E-value=0.0031  Score=60.17  Aligned_cols=111  Identities=14%  Similarity=0.161  Sum_probs=64.0

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiVvl~  243 (386)
                      .+|||||+|.||+. +++.+++.-+.++.++|++.... +++.+.|       +...    .+.+..+++ .++|+|++|
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~-~~~a~~~-------g~~~----~~~~~~~~l~~~~D~V~i~   70 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVSA----TCTDYRDVLQYGVDAVMIH   70 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCCC----CCSSTTGGGGGCCSEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHc-------CCCc----cccCHHHHhhcCCCEEEEE
Confidence            37999999999994 88887433378888999887542 2221111       2110    022333445 689999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcce
Q 016620          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMFR  293 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~i~g  293 (386)
                      +|...  ..   +-....++.|. +++.- .--.+-+.+.|.++.++..+..
T Consensus        71 tp~~~--h~---~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~  117 (323)
T 1xea_A           71 AATDV--HS---TLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQPL  117 (323)
T ss_dssp             SCGGG--HH---HHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             CCchh--HH---HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeE
Confidence            99422  21   11222344453 66652 1223345567888877765543

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.00  E-value=0.0031  Score=61.38  Aligned_cols=67  Identities=13%  Similarity=0.137  Sum_probs=47.0

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv  241 (386)
                      .+|||||+|.||+. .++.+++.-+++|. ++|++.......           ..    ....+.+++++++  +.|+|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~-----------~~----~~~~~~~~~~ll~~~~~D~V~   72 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRD-----------LP----DVTVIASPEAAVQHPDVDLVV   72 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHH-----------CT----TSEEESCHHHHHTCTTCSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh-----------CC----CCcEECCHHHHhcCCCCCEEE
Confidence            47999999999997 67766333378875 678876542111           00    1224579999998  789999


Q ss_pred             EccCCC
Q 016620          242 LHPVLD  247 (386)
Q Consensus       242 l~lPlt  247 (386)
                      +|+|..
T Consensus        73 i~tp~~   78 (364)
T 3e82_A           73 IASPNA   78 (364)
T ss_dssp             ECSCGG
T ss_pred             EeCChH
Confidence            999953

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.98  E-value=0.0031  Score=60.92  Aligned_cols=69  Identities=22%  Similarity=0.304  Sum_probs=49.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv  241 (386)
                      .+|||||+|.||+..++.+++. -++++. ++|++.... +.+.+.+       +     ...+.+++++++  +.|+|+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~ll~~~~~D~V~   80 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAAL-KAAVERT-------G-----ARGHASLTDMLAQTDADIVI   80 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHH-------C-----CEEESCHHHHHHHCCCSEEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCCCEEE
Confidence            5799999999999999987433 378865 788876542 2221111       2     224579999997  799999


Q ss_pred             EccCCC
Q 016620          242 LHPVLD  247 (386)
Q Consensus       242 l~lPlt  247 (386)
                      +|+|..
T Consensus        81 i~tp~~   86 (354)
T 3q2i_A           81 LTTPSG   86 (354)
T ss_dssp             ECSCGG
T ss_pred             ECCCcH
Confidence            999953

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.97  E-value=0.0029  Score=60.81  Aligned_cols=78  Identities=14%  Similarity=0.223  Sum_probs=48.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.+|..+|..|+ .-|. +|..+|.+.... +.............. .........++ +.+++||+|+++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la-~~g~~~v~L~Di~~~~l-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIV-QKNLGDVVLFDIVKNMP-HGKALDTSHTNVMAY-SNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHH-HHHHHHHHTHHHHHT-CCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCHHHH-HHHHHHHHhhhhhcC-CCcEEEECCCH-HHhCCCCEEEEeC
Confidence            58999999999999999885 4465 799999876432 111110000011111 11222233567 7789999999998


Q ss_pred             --CCC
Q 016620          245 --VLD  247 (386)
Q Consensus       245 --Plt  247 (386)
                        |..
T Consensus        81 g~p~k   85 (322)
T 1t2d_A           81 GFTKA   85 (322)
T ss_dssp             SCSSC
T ss_pred             CCCCC
Confidence              543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.94  E-value=0.0019  Score=65.29  Aligned_cols=101  Identities=16%  Similarity=0.212  Sum_probs=58.2

Q ss_pred             cccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhh
Q 016620          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLRE  236 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~  236 (386)
                      .+..+.+++|+|+|.|.+|+.+++.|++..|.+|.+++|+.... ++..+       ..+...  .......++.++++.
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka-~~la~-------~~~~~~~~~D~~d~~~l~~~l~~   88 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANA-QALAK-------PSGSKAISLDVTDDSALDKVLAD   88 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHH-HHHHG-------GGTCEEEECCTTCHHHHHHHHHT
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHH-HHHHH-------hcCCcEEEEecCCHHHHHHHHcC
Confidence            44678899999999999999999998543478999999986542 11110       001100  000111256677889


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +|+|+.++|..-. .. +...   .++.|..+++++
T Consensus        89 ~DvVIn~tp~~~~-~~-v~~a---~l~~g~~vvd~~  119 (467)
T 2axq_A           89 NDVVISLIPYTFH-PN-VVKS---AIRTKTDVVTSS  119 (467)
T ss_dssp             SSEEEECSCGGGH-HH-HHHH---HHHHTCEEEECS
T ss_pred             CCEEEECCchhhh-HH-HHHH---HHhcCCEEEEee
Confidence            9999999995321 11 1122   234566666654

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.94  E-value=0.0025  Score=61.05  Aligned_cols=76  Identities=21%  Similarity=0.277  Sum_probs=47.4

Q ss_pred             CCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHH-HhhhhhhhhhcCCC--CccccccCCHHHHhhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKF-VTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDiV  240 (386)
                      -++|+|||.|.||.++|..++. ++.-+|..+|++.. ..+.. .+.    .+.....  .....  .+..+.+++||+|
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~-~~~~~~~dl----~~~~~~~~~~~~i~--~~~~~al~~aDvV   78 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES-KAIGDAMDF----NHGKVFAPKPVDIW--HGDYDDCRDADLV   78 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH-HHHHHHHHH----HHHTTSSSSCCEEE--ECCGGGTTTCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcc-hHHHHHhhH----HHHhhhcCCCeEEE--cCcHHHhCCCCEE
Confidence            3689999999999999988743 33348999999864 22221 111    1111111  11111  2335678999999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      +++.|..
T Consensus        79 iia~~~~   85 (316)
T 1ldn_A           79 VICAGAN   85 (316)
T ss_dssp             EECCSCC
T ss_pred             EEcCCCC
Confidence            9997653

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.92  E-value=0.008  Score=58.21  Aligned_cols=114  Identities=17%  Similarity=0.111  Sum_probs=69.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl  242 (386)
                      .+|||||+|.||+.+++.+.+.-++++ .++|++.... +.+.+.+       +... ....+.+++++++  +.|+|++
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~-~~~a~~~-------~~~~-~~~~~~~~~~ll~~~~~D~V~i   77 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATAN-------NYPE-STKIHGSYESLLEDPEIDALYV   77 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHHT-------TCCT-TCEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------CCCC-CCeeeCCHHHHhcCCCCCEEEE
Confidence            479999999999999988743346776 4778876542 2222211       2100 1223578999997  5999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcce
Q 016620          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMFR  293 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~i~g  293 (386)
                      |+|...  ..   +-....++.|. +++.- ---.+-+.++|.++.++..+..
T Consensus        78 ~tp~~~--h~---~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~  125 (362)
T 1ydw_A           78 PLPTSL--HV---EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  125 (362)
T ss_dssp             CCCGGG--HH---HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             cCChHH--HH---HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEE
Confidence            999422  21   22233455665 45442 1223445577888888765543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.92  E-value=0.0024  Score=57.30  Aligned_cols=96  Identities=15%  Similarity=0.112  Sum_probs=56.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC---CHHHH-hhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEV-LREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~el-l~~aDiVv  241 (386)
                      ++|.|+|+|.+|+.+|+.| ...|.+|.++|+++.... ....       ..+. ........   .++++ +.++|+|+
T Consensus         1 M~iiIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~~-~l~~-------~~~~-~~i~gd~~~~~~l~~a~i~~ad~vi   70 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSM-LSRKYGVVIINKDRELCE-EFAK-------KLKA-TIIHGDGSHKEILRDAEVSKNDVVV   70 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHH-HHTTCCEEEEESCHHHHH-HHHH-------HSSS-EEEESCTTSHHHHHHHTCCTTCEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHHH-HHHH-------HcCC-eEEEcCCCCHHHHHhcCcccCCEEE
Confidence            4799999999999999998 578999999998775421 1100       0111 00000112   23443 67899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +++|.+..+  ++-......+.+...+|-..+
T Consensus        71 ~~~~~d~~n--~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           71 ILTPRDEVN--LFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             ECCSCHHHH--HHHHHHHHHTSCCCEEEECCC
T ss_pred             EecCCcHHH--HHHHHHHHHHcCCCeEEEEEe
Confidence            999964433  333344444333444444333

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.91  E-value=0.0013  Score=64.12  Aligned_cols=93  Identities=18%  Similarity=0.175  Sum_probs=55.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      +.++|+|+|.|.+|+.+|+.|++  ..+|.+.|++.+.....  ..      .............++.++++++|+|+.+
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~--~~~v~~~~~~~~~~~~~--~~------~~~~~~~d~~d~~~l~~~~~~~DvVi~~   84 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD--EFDVYIGDVNNENLEKV--KE------FATPLKVDASNFDKLVEVMKEFELVIGA   84 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT--TSEEEEEESCHHHHHHH--TT------TSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CccEEEEECCCHHHHHHHHHHhc--CCCeEEEEcCHHHHHHH--hc------cCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence            34579999999999999999843  46888888876542111  00      0000001111234577889999999999


Q ss_pred             cCCChhhhhcccHHHH-hcCCCCcEEEEcC
Q 016620          244 PVLDKTTYHLINKERL-ATMKKEAILVNCS  272 (386)
Q Consensus       244 lPlt~~t~~li~~~~~-~~mk~gailIN~a  272 (386)
                      +|..   .   +.... ..++.|.-+++++
T Consensus        85 ~p~~---~---~~~v~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           85 LPGF---L---GFKSIKAAIKSKVDMVDVS  108 (365)
T ss_dssp             CCGG---G---HHHHHHHHHHHTCEEEECC
T ss_pred             cCCc---c---cchHHHHHHhcCcceEeee
Confidence            9953   1   12222 1234566666665

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.90  E-value=0.0018  Score=62.15  Aligned_cols=104  Identities=17%  Similarity=0.203  Sum_probs=59.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|||.|.||..+|..|+ ..|.  +|..+|++.... +.....+..... .. ...... ..+ .+.++.||+|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~-~~g~~~~V~l~D~~~~~~-~~~~~~l~~~~~-~~-~~~~i~-~~d-~~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALL-MKGFAREMVLIDVDKKRA-EGDALDLIHGTP-FT-RRANIY-AGD-YADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGG-GS-CCCEEE-ECC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHH-HHHHHHHHhhhh-hc-CCcEEE-eCC-HHHhCCCCEEEEc
Confidence            47999999999999999875 4466  999999986432 111100000000 00 011111 134 3567899999999


Q ss_pred             cCCChh---hh-hcc------cHHHHhcC---CCCcEEEEcCCCc
Q 016620          244 PVLDKT---TY-HLI------NKERLATM---KKEAILVNCSRGP  275 (386)
Q Consensus       244 lPlt~~---t~-~li------~~~~~~~m---k~gailIN~aRg~  275 (386)
                      +|....   ++ .++      -.+.+..+   .+.+++|+++-+.
T Consensus        75 v~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~  119 (319)
T 1a5z_A           75 AGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPV  119 (319)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcH
Confidence            986331   01 110      12222222   4788888876543

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=96.90  E-value=0.1  Score=49.96  Aligned_cols=106  Identities=19%  Similarity=0.239  Sum_probs=68.8

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-...+...+...+..+..|   ..+....+++|.++++|+
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  239 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADV  239 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSE
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHHccCCE
Confidence            4889999999985  9999999987 579999999987542111111110000001112   123345789999999999


Q ss_pred             EEEccCCC-------hh-----hhhcccHHHHhcC-CCCcEEEEc
Q 016620          240 ISLHPVLD-------KT-----TYHLINKERLATM-KKEAILVNC  271 (386)
Q Consensus       240 Vvl~lPlt-------~~-----t~~li~~~~~~~m-k~gailIN~  271 (386)
                      |..-.-..       ++     ...-++.+.++.+ |++++|.-+
T Consensus       240 vyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~  284 (325)
T 1vlv_A          240 VYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHC  284 (325)
T ss_dssp             EEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEEC
T ss_pred             EEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECC
Confidence            98854411       11     1245688888888 888888776

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.89  E-value=0.0033  Score=60.49  Aligned_cols=71  Identities=21%  Similarity=0.270  Sum_probs=49.6

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVv  241 (386)
                      .+|||||+|.||+..++.++ +.-++++. ++|++.... +.+.+.|       +.   ....+.++++++++  .|+|+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~-~~~~~~~-------g~---~~~~~~~~~~ll~~~~~D~V~   71 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAA-QKVVEQY-------QL---NATVYPNDDSLLADENVDAVL   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHH-HHHHHHT-------TC---CCEEESSHHHHHHCTTCCEEE
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------CC---CCeeeCCHHHHhcCCCCCEEE
Confidence            37999999999999999875 33578866 678876542 2221111       11   12245799999986  89999


Q ss_pred             EccCCC
Q 016620          242 LHPVLD  247 (386)
Q Consensus       242 l~lPlt  247 (386)
                      +|+|..
T Consensus        72 i~tp~~   77 (344)
T 3mz0_A           72 VTSWGP   77 (344)
T ss_dssp             ECSCGG
T ss_pred             ECCCch
Confidence            999953

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.87  E-value=0.00024  Score=67.28  Aligned_cols=98  Identities=13%  Similarity=0.085  Sum_probs=61.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiVvl~l  244 (386)
                      ++|+|||.|.||..+|..|+ .-|.+|.+|+|+.... .        .....+..+...  ..+..+.+ ..+|+|++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~-~~g~~V~~~~r~~~~~-~--------~~~~~g~~~~~~--~~~~~~~~~~~~D~vilav   70 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQ-QSLPHTTLIGRHAKTI-T--------YYTVPHAPAQDI--VVKGYEDVTNTFDVIIIAV   70 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HHCTTCEEEESSCEEE-E--------EESSTTSCCEEE--EEEEGGGCCSCEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHH-HCCCeEEEEEeccCcE-E--------EEecCCeeccce--ecCchHhcCCCCCEEEEeC
Confidence            57999999999999999985 4577899999875321 0        001112111111  12333443 7899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCccc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~v  277 (386)
                      |.. ++...+ ++.-..+++++++|.+.-|=-.
T Consensus        71 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi~~  101 (294)
T 3g17_A           71 KTH-QLDAVI-PHLTYLAHEDTLIILAQNGYGQ  101 (294)
T ss_dssp             CGG-GHHHHG-GGHHHHEEEEEEEEECCSSCCC
T ss_pred             Ccc-CHHHHH-HHHHHhhCCCCEEEEeccCccc
Confidence            953 344443 3333456678888888776433

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.86  E-value=0.0053  Score=58.25  Aligned_cols=110  Identities=16%  Similarity=0.209  Sum_probs=64.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|+|.|.+|.++|..|+ ..|.  +|..||+..........+....  ...-..+.......+ .+.+++||+|+++
T Consensus         1 MkI~ViGaG~vG~~la~~l~-~~~~~~~v~L~D~~~~~~~g~~~dl~~~--~~~~~~~~~i~~t~d-~~a~~~aDiVVia   76 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCL-LNLDVDEIALVDIAEDLAVGEAMDLAHA--AAGIDKYPKIVGGAD-YSLLKGSEIIVVT   76 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHSCCSEEEEECSSHHHHHHHHHHHHHH--HHTTTCCCEEEEESC-GGGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECChHHHHHHHHHHHhh--hhhcCCCCEEEEeCC-HHHhCCCCEEEEC
Confidence            47999999999999999875 3455  8999999875421111111000  000011222222345 7889999999999


Q ss_pred             cCCCh---hhh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccCHHH
Q 016620          244 PVLDK---TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVA  281 (386)
Q Consensus       244 lPlt~---~t~-~li--~~-------~~~~~mk~gailIN~aRg~~vde~a  281 (386)
                      .+...   .++ .++  |.       +.+....|.+++++++  ..+|.-.
T Consensus        77 ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t  125 (294)
T 1oju_A           77 AGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMT  125 (294)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHH
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHH
Confidence            75431   111 111  11       2344457899999998  4555433

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.86  E-value=0.0043  Score=60.01  Aligned_cols=70  Identities=14%  Similarity=0.133  Sum_probs=48.6

Q ss_pred             CCeEEEEecChhHH-HHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEE
Q 016620          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~-~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (386)
                      -.+|||||+|.||+ .+++.+.+.-++++. ++|++.... +.+.+.|       +     ...+.+++++++  +.|+|
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g-----~~~~~~~~~ll~~~~~D~V   93 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRA-KRFTERF-------G-----GEPVEGYPALLERDDVDAV   93 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHH-HHHHHHH-------C-----SEEEESHHHHHTCTTCSEE
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHH-HHHHHHc-------C-----CCCcCCHHHHhcCCCCCEE
Confidence            35799999999999 788887433378876 778876432 2222211       1     122478999997  58999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      ++|+|..
T Consensus        94 ~i~tp~~  100 (350)
T 3rc1_A           94 YVPLPAV  100 (350)
T ss_dssp             EECCCGG
T ss_pred             EECCCcH
Confidence            9999953

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=96.83  E-value=0.12  Score=49.33  Aligned_cols=106  Identities=15%  Similarity=0.168  Sum_probs=68.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|.+|+++|= +++..+.+..+ ..||++|.+..|..-...+...+...+..+..|   ..+....+++|.++++|+|
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~~~~~~d~~eav~~aDvv  227 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNAAESG---GSFELLHDPVKAVKDADVI  227 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSEE
T ss_pred             CcCCcEEEEECCCcchHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCEE
Confidence            488999999997 88999999987 579999999987542111111100000001111   1233457899999999999


Q ss_pred             EEccCC-------Chh-----hhhcccHHHHhcCCCCcEEEEc
Q 016620          241 SLHPVL-------DKT-----TYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       241 vl~lPl-------t~~-----t~~li~~~~~~~mk~gailIN~  271 (386)
                      ..-.-.       .++     ...-++.+.++.+|++++|.-+
T Consensus       228 y~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~  270 (315)
T 1pvv_A          228 YTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHC  270 (315)
T ss_dssp             EECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEEC
T ss_pred             EEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECC
Confidence            885431       111     1245688888888988888776

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.81  E-value=0.12  Score=49.82  Aligned_cols=140  Identities=14%  Similarity=0.094  Sum_probs=85.4

Q ss_pred             hhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC--hhHHHHHHH
Q 016620          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYARM  183 (386)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G--~IG~~iA~~  183 (386)
                      +-.+|+|.|.-+....++  .+|+=++.+.+++                    .|..+.|.+|+++|=|  +++.+.+..
T Consensus       118 ~~~~vPVINa~~~~~HPt--Q~LaDl~Ti~e~~--------------------~g~~l~gl~ia~vGD~~~~va~Sl~~~  175 (333)
T 1duv_G          118 EYASVPVWNGLTNEFHPT--QLLADLLTMQEHL--------------------PGKAFNEMTLVYAGDARNNMGNSMLEA  175 (333)
T ss_dssp             HHHSSCEEESCCSSCCHH--HHHHHHHHHHHHS--------------------TTCCGGGCEEEEESCTTSHHHHHHHHH
T ss_pred             HhCCCCeEcCCCCCCCch--HHHHHHHHHHHHh--------------------cCCCCCCcEEEEECCCccchHHHHHHH
Confidence            344799999765433322  2344344443320                    1224889999999986  999999998


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCC--------hh-----h
Q 016620          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD--------KT-----T  250 (386)
Q Consensus       184 L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt--------~~-----t  250 (386)
                      + ..||++|.+..|..-...+.+.+...+..+..|   .......+++|.++++|+|..-.-..        .+     .
T Consensus       176 ~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~  251 (333)
T 1duv_G          176 A-ALTGLDLRLVAPQACWPEAALVTECRALAQQNG---GNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLR  251 (333)
T ss_dssp             H-HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT---CEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHG
T ss_pred             H-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhh
Confidence            7 478999999987542111111110000011112   12334579999999999998854411        01     1


Q ss_pred             hhcccHHHHhcC-CCCcEEEEc
Q 016620          251 YHLINKERLATM-KKEAILVNC  271 (386)
Q Consensus       251 ~~li~~~~~~~m-k~gailIN~  271 (386)
                      ..-++.+.++.+ |++++|.-+
T Consensus       252 ~y~v~~~ll~~a~~~~ai~mHc  273 (333)
T 1duv_G          252 EYQVNSKMMQLTGNPEVKFLHC  273 (333)
T ss_dssp             GGCBCHHHHHTTCCTTCEEEEC
T ss_pred             ccccCHHHHHhccCCCcEEECC
Confidence            245788899999 889888776

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.80  E-value=0.05  Score=51.70  Aligned_cols=147  Identities=18%  Similarity=0.203  Sum_probs=89.5

Q ss_pred             hhccCCcEEEEccccccccChhHHhhCCcEEecCC-CCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccc
Q 016620           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (386)
Q Consensus        82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~v~n~~-~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g  160 (386)
                      +...|...|+.+.-.-+.+. ..++-.+|+|.|.- |....++  .+++=++.+.+++                     |
T Consensus        88 Ls~~~~D~iviR~~~~~~~~-~la~~~~vPVINagdg~~~HPt--QaLaDl~Ti~e~~---------------------g  143 (304)
T 3r7f_A           88 LESIGVDVCVIRHSEDEYYE-ELVSQVNIPILNAGDGCGQHPT--QSLLDLMTIYEEF---------------------N  143 (304)
T ss_dssp             HHHHTCCEEEEECSSTTCHH-HHHHHCSSCEEESCCTTSCCHH--HHHHHHHHHHHHH---------------------S
T ss_pred             HHHhcCCEEEEecCChhHHH-HHHHhCCCCEEeCCCCCCcCcH--HHHHHHHHHHHHh---------------------C
Confidence            33333355665544333332 23455689999985 3333222  2333333333321                     1


Q ss_pred             cccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       161 ~~l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                       .+.|.+|+++|=|   ++..+.+..+ ..||++|.+..|..-.              . .....+  ...+++|+++++
T Consensus       144 -~l~glkva~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~--------------~-~~~~~g--~~~d~~eav~~a  204 (304)
T 3r7f_A          144 -TFKGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQ--------------D-EENTFG--TYVSMDEAVESS  204 (304)
T ss_dssp             -CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGS--------------C-TTCSSC--EECCHHHHHHHC
T ss_pred             -CCCCCEEEEEcCCCCcchHHHHHHHH-HHcCCEEEEECCCccC--------------c-chhhcC--ccCCHHHHhCCC
Confidence             3789999999975   6999999987 5799999999874321              0 000111  246899999999


Q ss_pred             CEEEEccCCChh-----------hhhcccHHHHhcCCCCcEEEEc
Q 016620          238 DVISLHPVLDKT-----------TYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       238 DiVvl~lPlt~~-----------t~~li~~~~~~~mk~gailIN~  271 (386)
                      |+|..-.-..+.           ...-++.+.++.+|++++|.-+
T Consensus       205 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHc  249 (304)
T 3r7f_A          205 DVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHP  249 (304)
T ss_dssp             SEEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEECC
T ss_pred             CEEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEECC
Confidence            999885321111           1234688888888888888765

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=96.80  E-value=0.081  Score=50.36  Aligned_cols=139  Identities=15%  Similarity=0.082  Sum_probs=84.6

Q ss_pred             HhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC--hhHHHHHH
Q 016620          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (386)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G--~IG~~iA~  182 (386)
                      ++-.+|+|.|.-+....++  .+++=++.+.+++         |             .+.|.+|+++|=|  ++..+.+.
T Consensus       112 A~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g-------------~l~gl~va~vGD~~~rva~Sl~~  167 (307)
T 2i6u_A          112 ASVATVPVINALSDEFHPC--QVLADLQTIAERK---------G-------------ALRGLRLSYFGDGANNMAHSLLL  167 (307)
T ss_dssp             HHHCSSCEEESCCSSCCHH--HHHHHHHHHHHHH---------S-------------CCTTCEEEEESCTTSHHHHHHHH
T ss_pred             HhhCCCCEEcCCCCCcCcc--HHHHHHHHHHHHh---------C-------------CcCCeEEEEECCCCcCcHHHHHH
Confidence            3445799999766443322  2344344443321         1             4889999999986  99999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCC-------hh-----h
Q 016620          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD-------KT-----T  250 (386)
Q Consensus       183 ~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt-------~~-----t  250 (386)
                      .+ ..||++|.+..|..-...+.+.+...+..+..|   ..+....+++|.++++|+|..-.-..       ++     .
T Consensus       168 ~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~  243 (307)
T 2i6u_A          168 GG-VTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTG---ASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFR  243 (307)
T ss_dssp             HH-HHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGG
T ss_pred             HH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHHHh
Confidence            87 579999999987542111111110000001112   12334579999999999998854310       00     1


Q ss_pred             hhcccHHHHhcCCCCcEEEEc
Q 016620          251 YHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       251 ~~li~~~~~~~mk~gailIN~  271 (386)
                      ..-++.+.++.+|++++|.-+
T Consensus       244 ~y~v~~~~l~~a~~~ai~mH~  264 (307)
T 2i6u_A          244 PFQLNSRLLALADSDAIVLHC  264 (307)
T ss_dssp             GGCBCHHHHHHSCTTCEEEEC
T ss_pred             hcCCCHHHHhhcCCCcEEECC
Confidence            244678888888888888766

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.79  E-value=0.0027  Score=58.89  Aligned_cols=99  Identities=19%  Similarity=0.219  Sum_probs=68.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      -..++|+++|+|.||+.+++.   . ++++ .+|+ .. .                +..  +.....+++++++++|+|+
T Consensus        10 ~~~~rV~i~G~GaIG~~v~~~---~-~leLv~v~~-~k-~----------------gel--gv~a~~d~d~lla~pD~VV   65 (253)
T 1j5p_A           10 HHHMTVLIIGMGNIGKKLVEL---G-NFEKIYAYD-RI-S----------------KDI--PGVVRLDEFQVPSDVSTVV   65 (253)
T ss_dssp             -CCCEEEEECCSHHHHHHHHH---S-CCSEEEEEC-SS-C----------------CCC--SSSEECSSCCCCTTCCEEE
T ss_pred             cccceEEEECcCHHHHHHHhc---C-CcEEEEEEe-cc-c----------------ccc--CceeeCCHHHHhhCCCEEE
Confidence            356799999999999999986   3 6654 4566 11 1                111  2223467888888999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNP  290 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde---~aL~~aL~~g~  290 (386)
                      =|.+.  +   -+.+.....++.|.=+|-+|-|.+.|.   +.|.++.++|.
T Consensus        66 e~A~~--~---av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg  112 (253)
T 1j5p_A           66 ECASP--E---AVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSP  112 (253)
T ss_dssp             ECSCH--H---HHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCS
T ss_pred             ECCCH--H---HHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCC
Confidence            88852  1   233335566889999999999988887   55666666653

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.79  E-value=0.0024  Score=62.05  Aligned_cols=69  Identities=10%  Similarity=0.133  Sum_probs=47.6

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC--CEEE
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiVv  241 (386)
                      .+|||||+|.||+. .++.+.+.-++++. ++|++.... +.+.       +..+    ....+.++++++++.  |+|+
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a-------~~~~----~~~~~~~~~~ll~~~~vD~V~   73 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERA-RRVH-------RFIS----DIPVLDNVPAMLNQVPLDAVV   73 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHH-GGGG-------GTSC----SCCEESSHHHHHHHSCCSEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHH-------HhcC----CCcccCCHHHHhcCCCCCEEE
Confidence            57999999999995 88887433378876 778876542 1111       1111    122357999999865  9999


Q ss_pred             EccCC
Q 016620          242 LHPVL  246 (386)
Q Consensus       242 l~lPl  246 (386)
                      +|+|.
T Consensus        74 i~tp~   78 (359)
T 3m2t_A           74 MAGPP   78 (359)
T ss_dssp             ECSCH
T ss_pred             EcCCc
Confidence            99994

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.77  E-value=0.0038  Score=62.71  Aligned_cols=77  Identities=16%  Similarity=0.210  Sum_probs=51.0

Q ss_pred             CCCeEEEEecChh--HHHHHHHHHh--c-CCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          164 KGQTVGVIGAGRI--GSAYARMMVE--G-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       164 ~g~~vgIvG~G~I--G~~iA~~L~~--~-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      ..++|+|||.|++  |..++..|++  . .| +|..||...... +.. ......+..   .+.......+++++++.||
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~l-e~~-~~~~~~l~~---~~~~I~~TtD~~eAl~dAD   77 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAA-QKN-EVIGNHSGN---GRWRYEAVSTLKKALSAAD   77 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHH-HHH-HHHHTTSTT---SCEEEEEESSHHHHHTTCS
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHH-HHH-HHHHHHHhc---cCCeEEEECCHHHHhcCCC
Confidence            4568999999998  5788877653  2 35 999999986432 111 111111111   2333445579999999999


Q ss_pred             EEEEccCC
Q 016620          239 VISLHPVL  246 (386)
Q Consensus       239 iVvl~lPl  246 (386)
                      +|+++++.
T Consensus        78 fVI~airv   85 (450)
T 3fef_A           78 IVIISILP   85 (450)
T ss_dssp             EEEECCCS
T ss_pred             EEEecccc
Confidence            99999964

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.74  E-value=0.0059  Score=59.23  Aligned_cols=72  Identities=15%  Similarity=0.299  Sum_probs=50.1

Q ss_pred             CCeEEEEecChhHHHHHHHHH-hcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~-~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (386)
                      -.+|||||+|.||+..++.++ +.-++++. ++|++.... +.+.+.|       +.   ....+.+++++++  +.|+|
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~---~~~~~~~~~~ll~~~~~D~V   91 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRA-QAALDKY-------AI---EAKDYNDYHDLINDKDVEVV   91 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHH-HHHHHHH-------TC---CCEEESSHHHHHHCTTCCEE
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHh-------CC---CCeeeCCHHHHhcCCCCCEE
Confidence            357999999999999999875 33478866 688876542 2222211       11   1224579999997  48999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      ++|+|..
T Consensus        92 ~i~tp~~   98 (357)
T 3ec7_A           92 IITASNE   98 (357)
T ss_dssp             EECSCGG
T ss_pred             EEcCCcH
Confidence            9999953

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.73  E-value=0.01  Score=56.75  Aligned_cols=69  Identities=13%  Similarity=0.217  Sum_probs=47.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC---CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGF---KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~f---g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (386)
                      .++||||+|.||+..++.+ +..   ++++. ++|++.... +.+.+.|       +..    ..+.+++++++  +.|+
T Consensus         3 ~rigiiG~G~ig~~~~~~l-~~~~~~~~~l~av~d~~~~~a-~~~a~~~-------~~~----~~~~~~~~ll~~~~vD~   69 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVL-QTLPRSEHQVVAVAARDLSRA-KEFAQKH-------DIP----KAYGSYEELAKDPNVEV   69 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTSCTTTEEEEEEECSSHHHH-HHHHHHH-------TCS----CEESSHHHHHHCTTCCE
T ss_pred             cEEEEECchHHHHHHHHHH-HhCCCCCeEEEEEEcCCHHHH-HHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence            3799999999999999987 443   34644 678876542 2222221       111    13579999997  6999


Q ss_pred             EEEccCCC
Q 016620          240 ISLHPVLD  247 (386)
Q Consensus       240 Vvl~lPlt  247 (386)
                      |++++|..
T Consensus        70 V~i~tp~~   77 (334)
T 3ohs_X           70 AYVGTQHP   77 (334)
T ss_dssp             EEECCCGG
T ss_pred             EEECCCcH
Confidence            99999953

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=96.72  E-value=0.15  Score=48.28  Aligned_cols=104  Identities=12%  Similarity=0.059  Sum_probs=71.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|.+|+++|= +++..+.+..+ ..||++|.+..|..-...+...+       ...     .....+++|.++++|+|
T Consensus       151 ~l~gl~ia~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~-------~~~-----~~~~~d~~eav~~aDvv  217 (301)
T 2ef0_A          151 GLAGLEVAWVGDGNNVLNSLLEVA-PLAGLKVRVATPKGYEPDPGLLK-------RAN-----AFFTHDPKEAALGAHAL  217 (301)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHH-------HHT-----CEEESCHHHHHTTCSEE
T ss_pred             CcCCcEEEEECCCchhHHHHHHHH-HHcCCEEEEECCchhcCCHHHHh-------hce-----eEEECCHHHHhcCCCEE
Confidence            388999999997 88999999887 57899999998754211111110       000     22357899999999999


Q ss_pred             EEccCCC------hh------hhhcccHHHHhcCCCCcEEEEcC---CCcccC
Q 016620          241 SLHPVLD------KT------TYHLINKERLATMKKEAILVNCS---RGPVID  278 (386)
Q Consensus       241 vl~lPlt------~~------t~~li~~~~~~~mk~gailIN~a---Rg~~vd  278 (386)
                      ..-.-..      ..      ...-++.+.++++|++++|.-+.   ||.=|+
T Consensus       218 y~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~  270 (301)
T 2ef0_A          218 YTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETT  270 (301)
T ss_dssp             EECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBC
T ss_pred             EecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccC
Confidence            8844311      01      12456889999999999998875   555444

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.70  E-value=0.0011  Score=63.04  Aligned_cols=99  Identities=16%  Similarity=0.251  Sum_probs=57.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.||..+|..| . -|.+|.+++|+.... +...+ .+-.....+..   .....+. ++....+|+|++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L-~-~g~~V~~~~r~~~~~-~~l~~-~G~~~~~~~~~---~~~~~~~~~~~~~~~D~vilav   75 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYL-S-LYHDVTVVTRRQEQA-AAIQS-EGIRLYKGGEE---FRADCSADTSINSDFDLLVVTV   75 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHH-HHHHH-HCEEEEETTEE---EEECCEEESSCCSCCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHH-h-cCCceEEEECCHHHH-HHHHh-CCceEecCCCe---ecccccccccccCCCCEEEEEe
Confidence            6899999999999999998 4 689999999976421 11100 00000000000   0000000 23467899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +.. ++...+  +.++.+.+++ +|.+.-|=
T Consensus        76 K~~-~~~~~l--~~l~~~~~~~-ivs~~nGi  102 (307)
T 3ego_A           76 KQH-QLQSVF--SSLERIGKTN-ILFLQNGM  102 (307)
T ss_dssp             CGG-GHHHHH--HHTTSSCCCE-EEECCSSS
T ss_pred             CHH-HHHHHH--HHhhcCCCCe-EEEecCCc
Confidence            853 333333  2334445666 77776653

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.69  E-value=0.0028  Score=60.77  Aligned_cols=103  Identities=14%  Similarity=0.149  Sum_probs=63.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .+|||+|+|.||+.+++.+.+.-++++ .++|++....           +   .   .+...+.++++++.++|+|++|+
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~-----------~---~---~gv~~~~d~~~ll~~~DvViiat   66 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-----------T---K---TPVFDVADVDKHADDVDVLFLCM   66 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-----------S---S---SCEEEGGGGGGTTTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHh-----------h---c---CCCceeCCHHHHhcCCCEEEEcC
Confidence            379999999999999998743336775 4778764320           0   0   11222456778778899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCc--ccCH-HHHHHHHHcCC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP--VIDE-VALVEHLKQNP  290 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~--~vde-~aL~~aL~~g~  290 (386)
                      |.....     +.....++.|.-++...-..  +-+. +.|.++.+++.
T Consensus        67 p~~~h~-----~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           67 GSATDI-----PEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             CTTTHH-----HHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             CcHHHH-----HHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            853221     22334456676555543332  2222 45666666543

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.68  E-value=0.0042  Score=62.90  Aligned_cols=128  Identities=11%  Similarity=0.225  Sum_probs=74.7

Q ss_pred             CCeEEEEecChh--HHHHHHHHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          165 GQTVGVIGAGRI--GSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       165 g~~vgIvG~G~I--G~~iA~~L~~--~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .++|+|||.|.+  |.++|..|++  ++ |.+|..||+..... +...+.....+.. ...+.......++++.++.||+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l-~~~~~~~~~~l~~-~~~~~~I~~ttD~~eal~dAD~   80 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERL-DAILTIAKKYVEE-VGADLKFEKTMNLDDVIIDADF   80 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHH-HHHHHHHHHHHHH-TTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHH-HHHHHHHHHHhcc-CCCCcEEEEECCHHHHhCCCCE
Confidence            468999999997  4656666642  44 78999999987532 1111110011111 1123334445688888999999


Q ss_pred             EEEccCCCh-----------hhhhccc-------------------------H---HHHhcCCCCcEEEEcCCCcccCHH
Q 016620          240 ISLHPVLDK-----------TTYHLIN-------------------------K---ERLATMKKEAILVNCSRGPVIDEV  280 (386)
Q Consensus       240 Vvl~lPlt~-----------~t~~li~-------------------------~---~~~~~mk~gailIN~aRg~~vde~  280 (386)
                      |+++.|...           .-.+++.                         .   +.+....|.+++||++-.-=+-..
T Consensus        81 VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~  160 (480)
T 1obb_A           81 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTT  160 (480)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHH
T ss_pred             EEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Confidence            999997410           0011100                         1   223334689999999875544455


Q ss_pred             HHHHHHHcCCcceEE
Q 016620          281 ALVEHLKQNPMFRVG  295 (386)
Q Consensus       281 aL~~aL~~g~i~gaa  295 (386)
                      ++.+ +...++.|.+
T Consensus       161 ~~~k-~p~~rviG~c  174 (480)
T 1obb_A          161 LVTR-TVPIKAVGFC  174 (480)
T ss_dssp             HHHH-HSCSEEEEEC
T ss_pred             HHHH-CCCCcEEecC
Confidence            5544 4455566653

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.67  E-value=0.0027  Score=63.23  Aligned_cols=96  Identities=19%  Similarity=0.208  Sum_probs=61.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  240 (386)
                      +.+|.|+|+|.+|+.+|+.| +..|.+|++.|.++.....         ++..+.. .......+   |+++ +.+||+|
T Consensus         4 ~~~viIiG~Gr~G~~va~~L-~~~g~~vvvId~d~~~v~~---------~~~~g~~-vi~GDat~~~~L~~agi~~A~~v   72 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLL-LSSGVKMVVLDHDPDHIET---------LRKFGMK-VFYGDATRMDLLESAGAAKAEVL   72 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEECCHHHHHH---------HHHTTCC-CEESCTTCHHHHHHTTTTTCSEE
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHHHHH---------HHhCCCe-EEEcCCCCHHHHHhcCCCccCEE
Confidence            45799999999999999998 6889999999998764221         1222221 11112223   3333 6789999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +++++....  .+.-....+.+.+...+|--++
T Consensus        73 iv~~~~~~~--n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           73 INAIDDPQT--NLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             EECCSSHHH--HHHHHHHHHHHCTTCEEEEEES
T ss_pred             EECCCChHH--HHHHHHHHHHhCCCCeEEEEEC
Confidence            999996433  3333455666667755554433

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.66  E-value=0.0048  Score=59.59  Aligned_cols=68  Identities=15%  Similarity=0.125  Sum_probs=47.7

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEE
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVv  241 (386)
                      .+|||||+|.||+. .++.+.+.-++++. ++|++......             ..  .....+.+++++++.  .|+|+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-------------~~--~~~~~~~~~~~ll~~~~vD~V~   72 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHA-------------DW--PAIPVVSDPQMLFNDPSIDLIV   72 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-------------TC--SSCCEESCHHHHHHCSSCCEEE
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-------------hC--CCCceECCHHHHhcCCCCCEEE
Confidence            47999999999997 77776433378865 67887654210             01  112345799999986  89999


Q ss_pred             EccCCCh
Q 016620          242 LHPVLDK  248 (386)
Q Consensus       242 l~lPlt~  248 (386)
                      +|+|...
T Consensus        73 i~tp~~~   79 (352)
T 3kux_A           73 IPTPNDT   79 (352)
T ss_dssp             ECSCTTT
T ss_pred             EeCChHH
Confidence            9999643

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.65  E-value=0.0052  Score=59.20  Aligned_cols=110  Identities=20%  Similarity=0.264  Sum_probs=61.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      -.+++|+|+|.|.||.++|..|+. ++.-++..+|.........-.+.-+.  ... ......  ..+..+.+++||+|+
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~--~~~-~~~~~i--~~~~~~a~~~aDiVv   81 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDA--LPF-TSPKKI--YSAEYSDAKDADLVV   81 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTT--GGG-SCCCEE--EECCGGGGTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhh--hhh-cCCcEE--EECcHHHhcCCCEEE
Confidence            356789999999999999988743 23238999998754321111111000  000 011111  233456789999999


Q ss_pred             EccCCCh---hhh-hcc--c----H---HHHhcCCCCcEEEEcCCCcccCH
Q 016620          242 LHPVLDK---TTY-HLI--N----K---ERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       242 l~lPlt~---~t~-~li--~----~---~~~~~mk~gailIN~aRg~~vde  279 (386)
                      ++.....   .++ .++  |    .   +.+....|.+++++++-  .+|.
T Consensus        82 i~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN--Pvdi  130 (326)
T 3vku_A           82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN--PVDI  130 (326)
T ss_dssp             ECCCCC----------------CHHHHHHHHHTTTCCSEEEECSS--SHHH
T ss_pred             ECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC--chHH
Confidence            9865321   122 122  1    1   23444567899999964  4443

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.64  E-value=0.0026  Score=61.34  Aligned_cols=69  Identities=14%  Similarity=0.159  Sum_probs=45.9

Q ss_pred             CeEEEEecChhHHH-HHH-HHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEE
Q 016620          166 QTVGVIGAGRIGSA-YAR-MMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~-~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  240 (386)
                      .+|||||+|.||+. .+. .+.+.-++++. ++|++.... . ..       ...    .+...+.+++++++.  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~-~-~~-------~~~----~~~~~~~~~~~ll~~~~~D~V   69 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-E-QA-------PIY----SHIHFTSDLDEVLNDPDVKLV   69 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG-G-GS-------GGG----TTCEEESCTHHHHTCTTEEEE
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH-H-HH-------Hhc----CCCceECCHHHHhcCCCCCEE
Confidence            37999999999996 455 33234478877 788876432 1 00       000    012245799999986  8999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      ++|+|..
T Consensus        70 ~i~tp~~   76 (345)
T 3f4l_A           70 VVCTHAD   76 (345)
T ss_dssp             EECSCGG
T ss_pred             EEcCChH
Confidence            9999953

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=96.64  E-value=0.1  Score=50.23  Aligned_cols=106  Identities=13%  Similarity=0.198  Sum_probs=69.9

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+.|.+|+++|=|  +++.+.+..+ ..||++|.+..|..-...+.+.+...+..+..|   ..+....+++|.++++|+
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  227 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDF  227 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSE
T ss_pred             CcCCeEEEEecCCccchHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCE
Confidence            5899999999986  9999999987 579999999987543211111110000001112   123345799999999999


Q ss_pred             EEEccCCC--------hh-----hhhcccHHHHhcC-CCCcEEEEc
Q 016620          240 ISLHPVLD--------KT-----TYHLINKERLATM-KKEAILVNC  271 (386)
Q Consensus       240 Vvl~lPlt--------~~-----t~~li~~~~~~~m-k~gailIN~  271 (386)
                      |..-.-..        .+     ...-++.+.++++ |++++|.-+
T Consensus       228 vytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHc  273 (335)
T 1dxh_A          228 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHC  273 (335)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEEC
T ss_pred             EEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECC
Confidence            98854411        11     1245788899999 889888776

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.62  E-value=0.0051  Score=61.39  Aligned_cols=113  Identities=11%  Similarity=0.105  Sum_probs=64.1

Q ss_pred             CeEEEEecChhHH-HHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620          166 QTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~-~iA~~L~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv  241 (386)
                      .+|||||+|.||+ .+++.+.+.-++++ .++|++.... +.+.+.|       +........+.++++++.  +.|+|+
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~~~~~~~~~~~~~~ll~~~~vD~V~  155 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKA-KIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDAVY  155 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHH-HHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHH-HHHHHHh-------CCCcccccccCCHHHHhcCCCCCEEE
Confidence            4799999999997 88888743236775 5788876542 2222211       211101123568899987  799999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~i  291 (386)
                      +|+|...  ..   +-....++.|. +++.- ---.+-+.+.|.++.++..+
T Consensus       156 iatp~~~--h~---~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~  202 (433)
T 1h6d_A          156 IILPNSL--HA---EFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK  202 (433)
T ss_dssp             ECSCGGG--HH---HHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             EcCCchh--HH---HHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCC
Confidence            9999532  21   12222344454 55542 11223344566666665433

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.61  E-value=0.013  Score=55.63  Aligned_cols=107  Identities=17%  Similarity=0.216  Sum_probs=58.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ..++|+|||.|.||..+|..|+ ..|.  +|..+|++.........+.... ..-.+  ........+. +.++.||+|+
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~-~~g~~~~V~l~d~~~~~~~~~~~~~~~~-~~~~~--~~~v~~~~~~-~~~~~aD~Vi   80 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAA-QRGIAREIVLEDIAKERVEAEVLDMQHG-SSFYP--TVSIDGSDDP-EICRDADMVV   80 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHHHHHHHHHHHT-GGGST--TCEEEEESCG-GGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChhHHHHHHHHHHhh-hhhcC--CeEEEeCCCH-HHhCCCCEEE
Confidence            3468999999999999999884 5577  9999999763321000110000 00000  1111111243 4678999999


Q ss_pred             EccCCChh---hh--------hccc--HHHHhcCCCCcEEEEcCCCc
Q 016620          242 LHPVLDKT---TY--------HLIN--KERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       242 l~lPlt~~---t~--------~li~--~~~~~~mk~gailIN~aRg~  275 (386)
                      ++++....   ++        .++.  .+.+....+++++++++-|-
T Consensus        81 i~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           81 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            99953211   10        1110  11122235788898886654

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.56  E-value=0.0045  Score=60.62  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=34.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ..+.|++|+|+|.|.+|+.+++.+ +.+|++|+++|++..
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa-~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAA-KEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCC
Confidence            347999999999999999999996 799999999998654

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.56  E-value=0.0066  Score=54.93  Aligned_cols=93  Identities=12%  Similarity=0.178  Sum_probs=57.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhhCCE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDi  239 (386)
                      ..+++.|+|+|.+|+.+|+.| ...|. |+++|+++.....         +. .+. ........+   |+++ +.++|.
T Consensus         8 ~~~~viI~G~G~~G~~la~~L-~~~g~-v~vid~~~~~~~~---------~~-~~~-~~i~gd~~~~~~l~~a~i~~ad~   74 (234)
T 2aef_A            8 KSRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRKKV---------LR-SGA-NFVHGDPTRVSDLEKANVRGARA   74 (234)
T ss_dssp             --CEEEEESCCHHHHHHHHHS-TTSEE-EEEESCGGGHHHH---------HH-TTC-EEEESCTTCHHHHHHTTCTTCSE
T ss_pred             CCCEEEEECCChHHHHHHHHH-HhCCe-EEEEECCHHHHHH---------Hh-cCC-eEEEcCCCCHHHHHhcCcchhcE
Confidence            346799999999999999997 67888 9999987654211         11 111 010111222   3333 678999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCc-EEEEc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEA-ILVNC  271 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~ga-ilIN~  271 (386)
                      |++++|.+.  .++.-....+.+.++. +++.+
T Consensus        75 vi~~~~~d~--~n~~~~~~a~~~~~~~~iia~~  105 (234)
T 2aef_A           75 VIVDLESDS--ETIHCILGIRKIDESVRIIAEA  105 (234)
T ss_dssp             EEECCSCHH--HHHHHHHHHHHHCSSSEEEEEC
T ss_pred             EEEcCCCcH--HHHHHHHHHHHHCCCCeEEEEE
Confidence            999998643  3344455566677774 44444

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.55  E-value=0.0078  Score=57.65  Aligned_cols=105  Identities=16%  Similarity=0.231  Sum_probs=58.7

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|+|.|.||.++|..|+. ++.-+|..+|...........+.-+... ... ...... ..+..+.+++||+|+++.
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~-~~~-~~~~v~-~~~~~~a~~~aDvVii~a   77 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSP-IHG-FDTRVT-GTNDYGPTEDSDVCIITA   77 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHH-HHT-CCCEEE-EESSSGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhcccc-ccC-CCcEEE-ECCCHHHhCCCCEEEECC
Confidence            479999999999999988743 3333899999876432111111100000 000 011111 124467789999999997


Q ss_pred             CCChh---hh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016620          245 VLDKT---TY-HLI--NK-------ERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 Plt~~---t~-~li--~~-------~~~~~mk~gailIN~aR  273 (386)
                      +....   ++ .++  |.       +.+....|.+++++++-
T Consensus        78 g~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  119 (314)
T 3nep_X           78 GLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN  119 (314)
T ss_dssp             CC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             CCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence            64321   11 111  11       23344568899999985

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.51  E-value=0.15  Score=48.75  Aligned_cols=139  Identities=17%  Similarity=0.113  Sum_probs=80.0

Q ss_pred             HhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh-hHHHHHHH
Q 016620          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (386)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~-IG~~iA~~  183 (386)
                      ++-.+|+|.|.-+....++  .+++=++.+.+++                     | .+.|.+|+++|=|+ +..+.+..
T Consensus       119 A~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------------------g-~l~gl~va~vGD~~~va~Sl~~~  174 (321)
T 1oth_A          119 AKEASIPIINGLSDLYHPI--QILADYLTLQEHY---------------------S-SLKGLTLSWIGDGNNILHSIMMS  174 (321)
T ss_dssp             HHHCSSCEEESCCSSCCHH--HHHHHHHHHHHHH---------------------S-CCTTCEEEEESCSSHHHHHHHTT
T ss_pred             HHhCCCCEEcCCCCCCCcH--HHHHHHHHHHHHh---------------------C-CcCCcEEEEECCchhhHHHHHHH
Confidence            3445799999766443332  2344444444321                     1 38899999999854 67777766


Q ss_pred             HHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCC----hhh--------h
Q 016620          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD----KTT--------Y  251 (386)
Q Consensus       184 L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt----~~t--------~  251 (386)
                      + ..||++|.+..|..-...+...+...+..+..|   ..+....+++|.++++|+|..-+-..    .+.        .
T Consensus       175 ~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~  250 (321)
T 1oth_A          175 A-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQG  250 (321)
T ss_dssp             T-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTT
T ss_pred             H-HHcCCeEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccC
Confidence            5 478999999987542111111110000001112   12334579999999999999843211    110        1


Q ss_pred             hcccHHHHhcCCCCcEEEEc
Q 016620          252 HLINKERLATMKKEAILVNC  271 (386)
Q Consensus       252 ~li~~~~~~~mk~gailIN~  271 (386)
                      .-++.+.++.+|++++|.-+
T Consensus       251 y~v~~~~l~~a~~dai~mH~  270 (321)
T 1oth_A          251 YQVTMKTAKVAASDWTFLHC  270 (321)
T ss_dssp             CCBCHHHHHTSCTTCEEEEC
T ss_pred             ceECHHHHhhcCCCCEEECC
Confidence            34577777777777777665

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.48  E-value=0.003  Score=58.37  Aligned_cols=101  Identities=19%  Similarity=0.206  Sum_probs=63.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh-------------------hhHHHHHHhhhhhhhhhcC-C
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-------------------ATRLEKFVTAYGQFLKANG-E  219 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~-------------------~~~~~~~~~~~~~~~~~~~-~  219 (386)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|+..                   .+. +...    +.+.... .
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La-~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka-~~~~----~~l~~~np~  100 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKV-ESAR----DALTRINPH  100 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHH-HHHH----HHHHHHCTT
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHH-HcCCCeEEEEcCCCcccccCCcccccChhhcCcHHH-HHHH----HHHHHHCCC
Confidence            4589999999999999999999985 6676 899999875                   111 1100    0111100 0


Q ss_pred             CCcccc--cc--CCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          220 QPVTWK--RA--SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       220 ~~~~~~--~~--~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      ......  ..  .+++++++++|+|+.+++ +.+++.++++...+.   +..+|+.
T Consensus       101 ~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B          101 IAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             SEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             cEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence            000000  01  135678899999999996 577888887765553   3345554

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.43  E-value=0.0079  Score=57.90  Aligned_cols=104  Identities=23%  Similarity=0.335  Sum_probs=59.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .++|+|+|.|.||.++|..|+ ..|.  +|..+|...........+.-..  ......+...  ..+..+.+++||+|++
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~-~~~~~~~l~l~D~~~~k~~g~a~DL~~~--~~~~~~~v~i--~~~~~~a~~~aDvVvi   79 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALI-NQGITDELVVIDVNKEKAMGDVMDLNHG--KAFAPQPVKT--SYGTYEDCKDADIVCI   79 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHHHHHHHHHHHT--GGGSSSCCEE--EEECGGGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEecchHHHHHHHHHHHhc--cccccCCeEE--EeCcHHHhCCCCEEEE
Confidence            568999999999999999874 3444  8999998754321111111000  0000011111  1223467899999999


Q ss_pred             ccCCC--h-hhh-hcc--c----H---HHHhcCCCCcEEEEcCC
Q 016620          243 HPVLD--K-TTY-HLI--N----K---ERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt--~-~t~-~li--~----~---~~~~~mk~gailIN~aR  273 (386)
                      +.+..  + .++ .++  |    .   +.+....|.+++++++-
T Consensus        80 ~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           80 CAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            97532  1 111 111  1    1   22333467889999974

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.42  E-value=0.018  Score=55.60  Aligned_cols=132  Identities=14%  Similarity=0.157  Sum_probs=76.9

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 016620          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (386)
Q Consensus       120 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~  198 (386)
                      ....||.++-+=|-+.|             |.-|...  ....|++++|.|||+|.+|..+|+.|+ ..|. ++..+|..
T Consensus         4 p~~~~~~~~~lnl~lm~-------------wRll~~~--g~~kL~~~~VlIvGaGGlGs~va~~La-~aGVg~ItlvD~D   67 (340)
T 3rui_A            4 PLKIADQSVDLNLKLMK-------------WRILPDL--NLDIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNG   67 (340)
T ss_dssp             HHHHHHHHHHHHHHHHH-------------HHTCTTC--CHHHHHTCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred             HHHHHHHHHHHHHHHHH-------------Hhhcchh--hHHHHhCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEecCC
Confidence            34567777666555555             3333221  114689999999999999999999985 5676 68888864


Q ss_pred             hhhH--H-HH-----------HHhhhhhhhhhcCCCCccccc---------------------cCCHHHHhhhCCEEEEc
Q 016620          199 QATR--L-EK-----------FVTAYGQFLKANGEQPVTWKR---------------------ASSMDEVLREADVISLH  243 (386)
Q Consensus       199 ~~~~--~-~~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~ell~~aDiVvl~  243 (386)
                      .-..  + ++           ..+...+.++.... ......                     ...++++++++|+|+.|
T Consensus        68 ~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP-~v~v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~  146 (340)
T 3rui_A           68 TVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP-LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLL  146 (340)
T ss_dssp             BCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCT-TCEEEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred             EeccccccccccCChhhcChHHHHHHHHHHHHhCC-CCEEEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEec
Confidence            3100  0 00           00000011111110 011111                     11356789999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +- +.+++.+++.....   .+..+|+.+
T Consensus       147 tD-n~~tR~lin~~c~~---~~~plI~aa  171 (340)
T 3rui_A          147 VD-SRESRWLPSLLSNI---ENKTVINAA  171 (340)
T ss_dssp             CS-STGGGHHHHHHHHH---TTCEEEEEE
T ss_pred             CC-CHHHHHHHHHHHHH---cCCcEEEee
Confidence            86 56788888876654   345677754

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.39  E-value=0.0071  Score=57.64  Aligned_cols=77  Identities=17%  Similarity=0.247  Sum_probs=47.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|+|.|.+|..+|..++ ..|. +|..+|.+.... +.............. .........+. +.+++||+|+++.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la-~~g~~~v~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~a~   78 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLA-AKELGDIVLLDIVEGVP-QGKALDLYEASPIEG-FDVRVTGTNNY-ADTANSDVIVVTS   78 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCCeEEEEeCCccHH-HHHHHhHHHhHhhcC-CCeEEEECCCH-HHHCCCCEEEEcC
Confidence            58999999999999999874 5564 799999875432 211111000000001 11122222566 6789999999997


Q ss_pred             CC
Q 016620          245 VL  246 (386)
Q Consensus       245 Pl  246 (386)
                      +.
T Consensus        79 g~   80 (309)
T 1ur5_A           79 GA   80 (309)
T ss_dssp             CC
T ss_pred             CC
Confidence            53

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.39  E-value=0.012  Score=56.27  Aligned_cols=106  Identities=20%  Similarity=0.230  Sum_probs=60.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh-hhHHHHH-HhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKF-VTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ..++|+|+|.|.+|..+|..++ ..|. +|..+|+.. ....+.. .+..+..  .............+ .+.+++||+|
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~-~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~--~~~~~~~~i~~t~d-~~a~~~aDvV   82 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLA-QKELADVVLVDIPQLENPTKGKALDMLEAS--PVQGFDANIIGTSD-YADTADSDVV   82 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHHHHHHH--HHHTCCCCEEEESC-GGGGTTCSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeccchHHHHHHhhhhHHHhh--hhccCCCEEEEcCC-HHHhCCCCEE
Confidence            4678999999999999999874 5677 999999984 2222211 1111110  00001111111223 4568999999


Q ss_pred             EEccCC--Ch-hhh-hcc--c----H---HHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVL--DK-TTY-HLI--N----K---ERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPl--t~-~t~-~li--~----~---~~~~~mk~gailIN~aR  273 (386)
                      +++...  .+ .++ .++  |    +   +.+....|.+++++++-
T Consensus        83 Iiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           83 VITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            999642  22 111 122  1    1   12233358899999984

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=96.38  E-value=0.014  Score=55.87  Aligned_cols=107  Identities=12%  Similarity=0.111  Sum_probs=62.5

Q ss_pred             CeEEEEecChhHH-HHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620          166 QTVGVIGAGRIGS-AYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~-~iA~~L~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv  241 (386)
                      .+|||||+|.+|. .+++.+ +.-++++ .++|++.... +.+.+.|       +    ....+.+++++++  +.|+|+
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l-~~~~~~lvav~d~~~~~~-~~~a~~~-------~----~~~~~~~~~~ll~~~~~D~V~   71 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQL-IDAGAELAGVFESDSDNR-AKFTSLF-------P----SVPFAASAEQLITDASIDLIA   71 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHH-HHTTCEEEEEECSCTTSC-HHHHHHS-------T----TCCBCSCHHHHHTCTTCCEEE
T ss_pred             cEEEEECCChHHHHHhhhhh-cCCCcEEEEEeCCCHHHH-HHHHHhc-------C----CCcccCCHHHHhhCCCCCEEE
Confidence            4799999999996 677776 4458885 5788876532 2221111       1    1123578999997  689999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~  290 (386)
                      +|+|...  ..   +-....++.|. +++.- .--.+-+.++|.++.++..
T Consensus        72 i~tp~~~--h~---~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g  117 (336)
T 2p2s_A           72 CAVIPCD--RA---ELALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETG  117 (336)
T ss_dssp             ECSCGGG--HH---HHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHC
T ss_pred             EeCChhh--HH---HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence            9999532  21   22223344444 55542 1123334455666665543

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.38  E-value=0.0052  Score=59.25  Aligned_cols=105  Identities=7%  Similarity=0.060  Sum_probs=61.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ..++|+|+|.|.||..+|..++ ..|.  +|..+|...........+..+..  ... .........+.++ +++||+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la-~~g~~~ev~L~Di~~~~~~g~a~DL~~~~--~~~-~~~~i~~t~d~~~-~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVL-MKDLADEVALVDVMEDKLKGEMMDLEHGS--LFL-HTAKIVSGKDYSV-SAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHH-HHCCCSEEEEECSCHHHHHHHHHHHHHHG--GGS-CCSEEEEESSSCS-CSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHHhhhhh--hcc-cCCeEEEcCCHHH-hCCCCEEE
Confidence            5689999999999999998874 3444  89999987643222111111110  000 1111222345655 89999999


Q ss_pred             EccCCCh---hhh-hcccH---------HHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDK---TTY-HLINK---------ERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~---~t~-~li~~---------~~~~~mk~gailIN~aR  273 (386)
                      ++.....   .++ .++..         +.+....|.+++++++-
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN  139 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE  139 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence            9864321   111 11111         22333478999999874

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.37  E-value=0.3  Score=46.68  Aligned_cols=106  Identities=15%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|.+|+++|= +++..+.+..+ ..+|++|.+..|..-...+.+.+...+..+..+   ..+....+++|.++++|+|
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~eav~~aDvv  229 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGC-AKVGMSIAVATPEGFTPDPAVSARASEIAGRTG---AEVQILRDPFEAARGAHIL  229 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhcCCCEE
Confidence            378999999986 67788888876 578999999887532111111110000001111   1233457999999999999


Q ss_pred             EEccCCChh------------hhhcccHHHHhcCCCCcEEEEc
Q 016620          241 SLHPVLDKT------------TYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       241 vl~lPlt~~------------t~~li~~~~~~~mk~gailIN~  271 (386)
                      ..-.-....            ...-++.+.++.+|++++|.-+
T Consensus       230 yt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHc  272 (323)
T 3gd5_A          230 YTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHC  272 (323)
T ss_dssp             EECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEEC
T ss_pred             EEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECC
Confidence            876542211            1134788888888888888765

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=96.37  E-value=0.069  Score=50.64  Aligned_cols=99  Identities=16%  Similarity=0.236  Sum_probs=67.6

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      .+.|.+|+++|=   |++..+.+..+ ..| |++|.+..|..-...+..       .+.   .+..+....+++|+++++
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~-------~~~---~g~~~~~~~d~~eav~~a  214 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEI-------LDE---LNYPVKEVENPFEVINEV  214 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHH-------HTT---CCSCEEEESCGGGTGGGC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCchhcCCHHH-------HHH---cCCeEEEeCCHHHHhcCC
Confidence            388999999998   59999999987 578 999999988542111110       111   112233457899999999


Q ss_pred             CEEEEccCCChh-----h------hhcccHHHHhcCCCCcEEEEc
Q 016620          238 DVISLHPVLDKT-----T------YHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       238 DiVvl~lPlt~~-----t------~~li~~~~~~~mk~gailIN~  271 (386)
                      |+|..-.-..+.     .      ..-++.+.++++|++++|.-+
T Consensus       215 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~  259 (299)
T 1pg5_A          215 DVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHP  259 (299)
T ss_dssp             SEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECC
T ss_pred             CEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECC
Confidence            999876554321     0      234677788888888777665

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.36  E-value=0.01  Score=59.61  Aligned_cols=103  Identities=17%  Similarity=0.249  Sum_probs=71.1

Q ss_pred             ccccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 016620          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (386)
Q Consensus       160 g~~l~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (386)
                      +..+.|++|+|+|+.          +-...+++.| ...|++|.+|||........   .|          + ......+
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~----------~-~~~~~~~  381 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAAL-QDAGATVKAYDPEGVEQASK---ML----------T-DVEFVEN  381 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHH-HHTSCEEEEECSSCHHHHGG---GC----------S-SCCBCSC
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCCHhHHH---hc----------C-CceEecC
Confidence            456899999999997          7789999998 68999999999987532111   00          0 1223468


Q ss_pred             HHHHhhhCCEEEEccCCChhhhhcccHHHH-hcCCCCcEEEEcCCCcccCHHHH
Q 016620          230 MDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVAL  282 (386)
Q Consensus       230 l~ell~~aDiVvl~lPlt~~t~~li~~~~~-~~mk~gailIN~aRg~~vde~aL  282 (386)
                      +++.++.+|.|+++++-. +-+. ++-+.+ +.|+ +.+++|+ |+ +.|.+.+
T Consensus       382 ~~~~~~~ad~vvi~t~~~-~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          382 PYAAADGADALVIVTEWD-AFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             HHHHHTTBSEEEECSCCT-TTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred             hhHHhcCCCEEEEeeCCH-Hhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence            899999999999999752 3222 454444 4565 4678884 54 4565444

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.35  E-value=0.0079  Score=60.81  Aligned_cols=80  Identities=15%  Similarity=0.341  Sum_probs=50.1

Q ss_pred             CCeEEEEecChh-HHHHHHHHHh---cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       165 g~~vgIvG~G~I-G~~iA~~L~~---~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .++|+|||.|.. |.++|..|++   ++ +-+|..||+..... +...+.-...+...+ .+.......++++.++.||+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~-~~~~~~~~~~l~~~~-~~~~I~~t~D~~eal~~AD~  105 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQ-DRIAGACDVFIREKA-PDIEFAATTDPEEAFTDVDF  105 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHH-HHHHHHHHHHHHHHC-TTSEEEEESCHHHHHSSCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHH-HHHHHHHHHHhccCC-CCCEEEEECCHHHHHcCCCE
Confidence            468999999998 6667655543   45 66899999987532 111111000111111 23333334688899999999


Q ss_pred             EEEccCC
Q 016620          240 ISLHPVL  246 (386)
Q Consensus       240 Vvl~lPl  246 (386)
                      |+++.|.
T Consensus       106 VViaag~  112 (472)
T 1u8x_X          106 VMAHIRV  112 (472)
T ss_dssp             EEECCCT
T ss_pred             EEEcCCC
Confidence            9999986

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.35  E-value=0.14  Score=48.70  Aligned_cols=101  Identities=14%  Similarity=0.235  Sum_probs=65.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|.+|+++|= +++..+.+..+ ..||++|.+..|..-...+.+       ..+  ..+..+....+++|.++++|+|
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~-------~~~--~~g~~v~~~~d~~eav~~aDvv  220 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAA-RILDFKLQLSTPPGYALDAKL-------VDA--ESAPFYQVFDDPNEACKGADLV  220 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCGGGCCCGGG-------SCG--GGGGGEEECSSHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHH-HHcCCEEEEECCcccCCCHHH-------HHH--HcCCeEEEEcCHHHHhcCCCEE
Confidence            388999999986 56777888776 478999999987432110000       000  0112233457999999999999


Q ss_pred             EEcc----CCCh---h-----hhhcccHHHHhcCCCCcEEEEcC
Q 016620          241 SLHP----VLDK---T-----TYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       241 vl~l----Plt~---~-----t~~li~~~~~~~mk~gailIN~a  272 (386)
                      ..-.    ....   +     ...-++.+.++.+|++++|.-+.
T Consensus       221 yt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l  264 (309)
T 4f2g_A          221 TTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCL  264 (309)
T ss_dssp             EECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             EecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence            8754    1100   0     12446888888888888887663

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.34  E-value=0.0093  Score=57.37  Aligned_cols=107  Identities=17%  Similarity=0.275  Sum_probs=59.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ...++|+|+|.|.+|..+|..|+ ..|. +|..+|...........+...... ..+ .+.......+. +.+++||+|+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~-~~~~~~v~L~Di~~~~~~g~~~dl~~~~~-~~~-~~~~v~~t~d~-~a~~~aDiVI   80 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAG-LKELGDVVLFDIAEGTPQGKGLDIAESSP-VDG-FDAKFTGANDY-AAIEGADVVI   80 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHHHHHHHH-HHT-CCCCEEEESSG-GGGTTCSEEE
T ss_pred             CcCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCchhHHHHHHHHhchhh-hcC-CCCEEEEeCCH-HHHCCCCEEE
Confidence            34679999999999999999874 4455 999999876532111111100000 000 11122222454 7889999999


Q ss_pred             EccCCC--hh-hh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLD--KT-TY-HLI--NK-------ERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt--~~-t~-~li--~~-------~~~~~mk~gailIN~aR  273 (386)
                      ++.+..  +. |+ .++  |.       +.+....|.+++++++-
T Consensus        81 iaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           81 VTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             ECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            997532  11 11 111  11       12223358899999875

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.29  E-value=0.0074  Score=58.54  Aligned_cols=77  Identities=23%  Similarity=0.290  Sum_probs=49.7

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      +.+++|+|+|. |.+|+.+|..++ ..|  -+|..+|...........+     +..............+..+.+++||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~-~~g~~~evvLiDi~~~k~~g~a~D-----L~~~~~~~~~i~~t~d~~~al~dADv   79 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAA-MMRLTPNLCLYDPFAVGLEGVAEE-----IRHCGFEGLNLTFTSDIKEALTDAKY   79 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHH-HTTCCSCEEEECSCHHHHHHHHHH-----HHHHCCTTCCCEEESCHHHHHTTEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHH-hcCCCCEEEEEeCCchhHHHHHHh-----hhhCcCCCCceEEcCCHHHHhCCCCE
Confidence            46789999998 999999997763 455  4899999875432111111     11111111122234678888999999


Q ss_pred             EEEccC
Q 016620          240 ISLHPV  245 (386)
Q Consensus       240 Vvl~lP  245 (386)
                      |+++..
T Consensus        80 VvitaG   85 (343)
T 3fi9_A           80 IVSSGG   85 (343)
T ss_dssp             EEECCC
T ss_pred             EEEccC
Confidence            999853

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.28  E-value=0.0074  Score=60.64  Aligned_cols=75  Identities=8%  Similarity=0.074  Sum_probs=49.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc---cccccCCHHHHhhhCCEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV---TWKRASSMDEVLREADVI  240 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~ell~~aDiV  240 (386)
                      .+++|+|+|.|.||+.+++.|+ ..|.+|.+++|+.... +...       ...+....   ......+++++++.+|+|
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~-~~G~~V~v~~R~~~~a-~~la-------~~~~~~~~~~~Dv~d~~~l~~~l~~~DvV   72 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESA-KKLS-------AGVQHSTPISLDVNDDAALDAEVAKHDLV   72 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHH-TTTCEEEEEESSHHHH-HHTT-------TTCTTEEEEECCTTCHHHHHHHHTTSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCcCEEEEEECCHHHH-HHHH-------HhcCCceEEEeecCCHHHHHHHHcCCcEE
Confidence            4689999999999999999985 6889999999976432 1110       00000000   011112456778899999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      +.++|..
T Consensus        73 In~a~~~   79 (450)
T 1ff9_A           73 ISLIPYT   79 (450)
T ss_dssp             EECCC--
T ss_pred             EECCccc
Confidence            9999964

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=96.23  E-value=0.0055  Score=58.37  Aligned_cols=98  Identities=11%  Similarity=0.125  Sum_probs=56.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .++|+|||.|.+|..+|..++ .-|.  +|..+|.... ......+.     ......  ......++ +.+++||+|++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~-~~g~~~ev~L~Di~~~-~~g~a~dl-----~~~~~~--~i~~t~d~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAIS-AKGIADRLVLLDLSEG-TKGATMDL-----EIFNLP--NVEISKDL-SASAHSKVVIF   83 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECCC------CHHHH-----HHHTCT--TEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEcCCcc-hHHHHHHH-----hhhcCC--CeEEeCCH-HHHCCCCEEEE
Confidence            378999999999999998774 3345  9999998764 21111111     011111  12223566 66899999999


Q ss_pred             ccCCCh----------hhhhcc---cHHHHhcCCCCcEEEEcCC
Q 016620          243 HPVLDK----------TTYHLI---NKERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt~----------~t~~li---~~~~~~~mk~gailIN~aR  273 (386)
                      +.....          ++..++   .++.-+. .+.+++++++-
T Consensus        84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~-~p~a~iiv~sN  126 (303)
T 2i6t_A           84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHY-SQHSVLLVASQ  126 (303)
T ss_dssp             CCCC----CCHHHHHHHHHHHHHHHHHHHHHH-TTTCEEEECSS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHh-CCCeEEEEcCC
Confidence            973211          111111   1222222 48889988876

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.22  E-value=0.021  Score=53.38  Aligned_cols=104  Identities=15%  Similarity=0.231  Sum_probs=62.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .++++.|+|.|.+|++++..| ...|+ +|++++|+.... +...+.+       +.   .+.  .++.  +.++|+|+.
T Consensus       118 ~~~~vlvlGaGgaarav~~~L-~~~G~~~i~v~nRt~~ka-~~la~~~-------~~---~~~--~~~~--~~~~DivIn  181 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKTG-QYLAALY-------GY---AYI--NSLE--NQQADILVN  181 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHHH-HHHHHHH-------TC---EEE--SCCT--TCCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CC---ccc--hhhh--cccCCEEEE
Confidence            467899999999999999998 57897 799999986542 1111111       10   111  1222  468999999


Q ss_pred             ccCCChhhh-----hcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          243 HPVLDKTTY-----HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       243 ~lPlt~~t~-----~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                      ++|..-...     -.+..+.+   +++.+++|+.-.+ .++ .|++..++
T Consensus       182 aTp~gm~~~~~~~~~~~~~~~l---~~~~~v~DlvY~P-~~T-~ll~~A~~  227 (271)
T 1npy_A          182 VTSIGMKGGKEEMDLAFPKAFI---DNASVAFDVVAMP-VET-PFIRYAQA  227 (271)
T ss_dssp             CSSTTCTTSTTTTSCSSCHHHH---HHCSEEEECCCSS-SSC-HHHHHHHH
T ss_pred             CCCCCccCccccCCCCCCHHHc---CCCCEEEEeecCC-CCC-HHHHHHHH
Confidence            999643211     11333333   4567777877643 233 44444443

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.22  E-value=0.24  Score=48.08  Aligned_cols=139  Identities=17%  Similarity=0.182  Sum_probs=84.5

Q ss_pred             HhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecC--hhHHHHHH
Q 016620          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (386)
Q Consensus       105 ~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G--~IG~~iA~  182 (386)
                      ++-.+|+|.|.-+....++  .+|+=++.+.+++                     | .+.|.+|+++|=|  +++.+++.
T Consensus       140 A~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~~---------------------g-~l~gl~va~vGD~~~rva~Sl~~  195 (359)
T 2w37_A          140 ARDSGVPVWNGLTDEWHPT--QMLADFMTVKENF---------------------G-KLQGLTLTFMGDGRNNVANSLLV  195 (359)
T ss_dssp             HHHSSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------------------S-CCTTCEEEEESCTTSHHHHHHHH
T ss_pred             HHhCCCCEEcCCCCCCCcc--HHHHHHHHHHHHh---------------------C-CcCCeEEEEECCCccchHHHHHH
Confidence            3455799999655433222  2344344443321                     1 4889999999986  99999999


Q ss_pred             HHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCC------hh-----hh
Q 016620          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD------KT-----TY  251 (386)
Q Consensus       183 ~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt------~~-----t~  251 (386)
                      .+ ..||++|.+..|..-...+.+.+...+..+..|   ..+....+++|.++++|+|..-.-..      .+     ..
T Consensus       196 ~~-~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~  271 (359)
T 2w37_A          196 TG-AILGVNIHIVAPKALFPTEETQNIAKGFAEKSG---AKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTP  271 (359)
T ss_dssp             HH-HHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGG
T ss_pred             HH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhc
Confidence            87 478999999987543211111110000001112   12334579999999999998855410      01     12


Q ss_pred             hcccHHHHhcCC---CCcEEEEc
Q 016620          252 HLINKERLATMK---KEAILVNC  271 (386)
Q Consensus       252 ~li~~~~~~~mk---~gailIN~  271 (386)
                      .-++.+.++.+|   ++++|.-+
T Consensus       272 y~v~~ell~~ak~~~~dai~MHc  294 (359)
T 2w37_A          272 YQVNMEAMKKTGTPDDQLIFMHC  294 (359)
T ss_dssp             GCBCHHHHHTTCCCGGGCEEEEC
T ss_pred             cccCHHHHHhhCCCCCCEEEECC
Confidence            456888888888   88888766

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.21  E-value=0.0071  Score=58.68  Aligned_cols=66  Identities=17%  Similarity=0.181  Sum_probs=46.2

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEE
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVv  241 (386)
                      .+|||||+|.||+. .++.+++.-++++. ++|++.....+              ..+ ....+.+++++++.  .|+|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~--------------~~~-~~~~~~~~~~ll~~~~vD~V~   70 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE--------------RYP-QASIVRSFKELTEDPEIDLIV   70 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT--------------TCT-TSEEESCSHHHHTCTTCCEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH--------------hCC-CCceECCHHHHhcCCCCCEEE
Confidence            47999999999997 67766433378875 67877543110              010 12345799999987  89999


Q ss_pred             EccCC
Q 016620          242 LHPVL  246 (386)
Q Consensus       242 l~lPl  246 (386)
                      +|+|.
T Consensus        71 i~tp~   75 (362)
T 3fhl_A           71 VNTPD   75 (362)
T ss_dssp             ECSCG
T ss_pred             EeCCh
Confidence            99995

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=96.18  E-value=0.014  Score=58.64  Aligned_cols=81  Identities=14%  Similarity=0.173  Sum_probs=50.7

Q ss_pred             CCeEEEEecChh-HHHHHHHHHh---cC-CcEEEEEcCCh--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       165 g~~vgIvG~G~I-G~~iA~~L~~---~f-g~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      .++|+|||.|.. |..++..|++   .+ +-+|..||+..  .. .+...+ ...........+.......++++.++.|
T Consensus         7 ~~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~-~~~~~~-~~~~~~~~~~~~~~i~~t~D~~eal~gA   84 (450)
T 1s6y_A            7 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEK-LEIVGA-LAKRMVEKAGVPIEIHLTLDRRRALDGA   84 (450)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHH-HHHHHH-HHHHHHHHTTCCCEEEEESCHHHHHTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHH-HHHHHH-HHHHHHhhcCCCcEEEEeCCHHHHhCCC
Confidence            358999999999 8887665543   45 56899999977  43 111111 0011111111233333346888999999


Q ss_pred             CEEEEccCCC
Q 016620          238 DVISLHPVLD  247 (386)
Q Consensus       238 DiVvl~lPlt  247 (386)
                      |+|+++.|..
T Consensus        85 D~VVitagv~   94 (450)
T 1s6y_A           85 DFVTTQFRVG   94 (450)
T ss_dssp             SEEEECCCTT
T ss_pred             CEEEEcCCCC
Confidence            9999999953

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.16  E-value=0.019  Score=55.14  Aligned_cols=110  Identities=16%  Similarity=0.259  Sum_probs=60.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ..++|+|+|.|.+|.++|..|+ ..|. +|..+|...........+.-+. ....+ .+.......+ .+.++.||+|++
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~-~~~~~~v~l~Di~~~~~~g~a~dL~~~-~~~~~-~~~~v~~t~d-~~a~~~aDvVIi   79 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLAL-IKQLGDVVLFDIAQGMPNGKALDLLQT-CPIEG-VDFKVRGTND-YKDLENSDVVIV   79 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHHHHTT-HHHHT-CCCCEEEESC-GGGGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCChHHHHHHHHHHHhh-hhhcC-CCcEEEEcCC-HHHHCCCCEEEE
Confidence            3578999999999999998874 3344 9999998764321111111000 00000 1111221234 467899999999


Q ss_pred             ccCCC--h-hhh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccCH
Q 016620          243 HPVLD--K-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       243 ~lPlt--~-~t~-~li--~~-------~~~~~mk~gailIN~aRg~~vde  279 (386)
                      +.+..  + .++ .++  |.       +.+....|.+++++++  ..+|.
T Consensus        80 ~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~  127 (321)
T 3p7m_A           80 TAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDI  127 (321)
T ss_dssp             CCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHH
T ss_pred             cCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHH
Confidence            96532  1 111 111  11       1222334889999985  44444

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.15  E-value=0.014  Score=56.12  Aligned_cols=68  Identities=12%  Similarity=0.145  Sum_probs=46.5

Q ss_pred             eEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEEE
Q 016620          167 TVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (386)
Q Consensus       167 ~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVvl  242 (386)
                      ++||||+|.||+. .+..+.+.-+++|. ++|++... .+++.+.|       +.    ...+.++++++++  .|+|++
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~-a~~~a~~~-------g~----~~~y~d~~ell~~~~iDaV~I   92 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTR-AREMADRF-------SV----PHAFGSYEEMLASDVIDAVYI   92 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHH-HHHHHHHH-------TC----SEEESSHHHHHHCSSCSEEEE
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHH-HHHHHHHc-------CC----CeeeCCHHHHhcCCCCCEEEE
Confidence            7999999999985 56665434478876 57887654 23332222       21    1235799999964  799999


Q ss_pred             ccCC
Q 016620          243 HPVL  246 (386)
Q Consensus       243 ~lPl  246 (386)
                      |+|.
T Consensus        93 ~tP~   96 (350)
T 4had_A           93 PLPT   96 (350)
T ss_dssp             CSCG
T ss_pred             eCCC
Confidence            9995

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.14  E-value=0.018  Score=56.41  Aligned_cols=69  Identities=19%  Similarity=0.283  Sum_probs=48.3

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEE
Q 016620          166 QTVGVIGAG-RIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G-~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVv  241 (386)
                      .+|||||+| .+|+..++.+.+.-++++. ++|++.... +.+.+.|       +     ...+.+++|++++  .|+|+
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g-----~~~~~~~~ell~~~~vD~V~   69 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVR-ERFGKEY-------G-----IPVFATLAEMMQHVQMDAVY   69 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHH-HHHHHHH-------T-----CCEESSHHHHHHHSCCSEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHH-HHHHHHc-------C-----CCeECCHHHHHcCCCCCEEE
Confidence            479999999 9999999887443477765 678876542 2221111       2     1235799999986  99999


Q ss_pred             EccCCC
Q 016620          242 LHPVLD  247 (386)
Q Consensus       242 l~lPlt  247 (386)
                      +++|..
T Consensus        70 i~tp~~   75 (387)
T 3moi_A           70 IASPHQ   75 (387)
T ss_dssp             ECSCGG
T ss_pred             EcCCcH
Confidence            999953

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.12  E-value=0.67  Score=44.85  Aligned_cols=105  Identities=11%  Similarity=0.145  Sum_probs=63.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|.+|+++|= +++..+.+..+ ..||++|.+..|..-...+.+.+...+..+..|   ..+....+++ .++++|+|
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~-av~~aDVV  224 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG---GSFLVTDDAS-SVEGADFL  224 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHS---CEEEEECCGG-GGTTCSEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEECCHH-HHcCCCEE
Confidence            588999999986 67888888876 579999999987532111111110000001111   1233457888 99999999


Q ss_pred             EEccCC----C----hhh------hhcccHHHHhcCCCCcEEEEc
Q 016620          241 SLHPVL----D----KTT------YHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       241 vl~lPl----t----~~t------~~li~~~~~~~mk~gailIN~  271 (386)
                      ..-+-.    .    .+-      ..-++.+.++.+|++++|.-+
T Consensus       225 ytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHc  269 (355)
T 4a8p_A          225 YTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHC  269 (355)
T ss_dssp             EECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEEC
T ss_pred             EecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECC
Confidence            874311    0    110      134577777777777777665

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.11  E-value=0.5  Score=45.45  Aligned_cols=105  Identities=11%  Similarity=0.142  Sum_probs=62.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.|.+|+++|= +++..+.+..+ ..||++|.+..|..-...+.+.+...+..+..+   ..+....+++ .++++|+|
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~-av~~aDvv  246 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG---GSFLVTDDAS-SVEGADFL  246 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHH-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHC---CEEEEECCGG-GGTTCSEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CEEEEECChh-HHcCCCEE
Confidence            589999999986 67788888876 579999999987532111111110000001111   1233457888 99999999


Q ss_pred             EEccCC----Chh---h-------hhcccHHHHhcCCCCcEEEEc
Q 016620          241 SLHPVL----DKT---T-------YHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       241 vl~lPl----t~~---t-------~~li~~~~~~~mk~gailIN~  271 (386)
                      ..-+-.    ..+   .       ..-++.+.++++|++++|.-+
T Consensus       247 ytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHc  291 (339)
T 4a8t_A          247 YTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHC  291 (339)
T ss_dssp             EECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEEC
T ss_pred             EecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECC
Confidence            974311    010   0       133566677777777776655

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.10  E-value=0.0077  Score=58.37  Aligned_cols=68  Identities=10%  Similarity=0.125  Sum_probs=47.0

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv  241 (386)
                      .+|||||+|.||+. .++.+.+.-+++|. ++|++.......    +       +    ....+.+++++++  +.|+|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~----~-------~----~~~~~~~~~~ll~~~~vD~V~   70 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKRD----F-------P----DAEVVHELEEITNDPAIELVI   70 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHHH----C-------T----TSEEESSTHHHHTCTTCCEEE
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhh----C-------C----CCceECCHHHHhcCCCCCEEE
Confidence            47999999999997 67766323378865 668876431111    1       1    1224578999998  789999


Q ss_pred             EccCCCh
Q 016620          242 LHPVLDK  248 (386)
Q Consensus       242 l~lPlt~  248 (386)
                      +|+|...
T Consensus        71 i~tp~~~   77 (358)
T 3gdo_A           71 VTTPSGL   77 (358)
T ss_dssp             ECSCTTT
T ss_pred             EcCCcHH
Confidence            9999643

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=96.04  E-value=0.027  Score=53.82  Aligned_cols=105  Identities=20%  Similarity=0.243  Sum_probs=59.4

Q ss_pred             CCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .++|+|+|.|.+|.++|..|+. ++.-+|..+|...........+.-+. . .....+.... . +..+.++.||+|+++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~-~-~~~~~~~~v~-~-~~~~a~~~aDvVvi~   81 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHA-T-PYSPTTVRVK-A-GEYSDCHDADLVVIC   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHH-G-GGSSSCCEEE-E-CCGGGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhh-h-hhcCCCeEEE-e-CCHHHhCCCCEEEEC
Confidence            4689999999999999987753 23348999998753221111111000 0 0000111222 1 346778999999999


Q ss_pred             cCCChh---hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016620          244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPlt~~---t~--------~li~--~~~~~~mk~gailIN~aR  273 (386)
                      .+....   ++        .++.  .+.+....|++++++++-
T Consensus        82 ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  124 (317)
T 3d0o_A           82 AGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN  124 (317)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            865321   11        1110  012333478999999763

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.04  E-value=0.018  Score=56.50  Aligned_cols=73  Identities=12%  Similarity=0.146  Sum_probs=49.3

Q ss_pred             CCeEEEEecCh---hHHHHHHHHHhcCCcEEE--EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---
Q 016620          165 GQTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---  236 (386)
Q Consensus       165 g~~vgIvG~G~---IG~~iA~~L~~~fg~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---  236 (386)
                      -.+|||||+|.   ||+..+..++..-++++.  ++|++.... +.+.+.       .+...  ...+.+++++++.   
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~-------~g~~~--~~~~~~~~~ll~~~~~   81 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRG-SAFGEQ-------LGVDS--ERCYADYLSMFEQEAR   81 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHH-HHHHHH-------TTCCG--GGBCSSHHHHHHHHTT
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHH-HHHHHH-------hCCCc--ceeeCCHHHHHhcccc
Confidence            35799999999   999988876433347776  468876542 222211       12211  1245799999986   


Q ss_pred             ----CCEEEEccCCC
Q 016620          237 ----ADVISLHPVLD  247 (386)
Q Consensus       237 ----aDiVvl~lPlt  247 (386)
                          .|+|++|+|..
T Consensus        82 ~~~~vD~V~i~tp~~   96 (398)
T 3dty_A           82 RADGIQAVSIATPNG   96 (398)
T ss_dssp             CTTCCSEEEEESCGG
T ss_pred             cCCCCCEEEECCCcH
Confidence                89999999953

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.04  E-value=0.013  Score=54.13  Aligned_cols=81  Identities=16%  Similarity=0.146  Sum_probs=51.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .+|+|+|+|.||+.+++.+. ..+-++.+ +|+.....                   .+.....++++++ ++|+|+-+.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~-~~~~eLva~~d~~~~~~-------------------~gv~v~~dl~~l~-~~DVvIDft   62 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAE-EKGHEIVGVIENTPKAT-------------------TPYQQYQHIADVK-GADVAIDFS   62 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCC---------------------CCSCBCSCTTTCT-TCSEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHH-hCCCEEEEEEecCcccc-------------------CCCceeCCHHHHh-CCCEEEEeC
Confidence            57999999999999999874 44336554 78764320                   1122346788888 999988554


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      .- ..+..     .+. ++.|.-+|....|
T Consensus        63 ~p-~a~~~-----~~~-l~~g~~vVigTTG   85 (243)
T 3qy9_A           63 NP-NLLFP-----LLD-EDFHLPLVVATTG   85 (243)
T ss_dssp             CH-HHHHH-----HHT-SCCCCCEEECCCS
T ss_pred             Ch-HHHHH-----HHH-HhcCCceEeCCCC
Confidence            31 12222     233 7777767766666

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.04  E-value=0.012  Score=56.84  Aligned_cols=104  Identities=18%  Similarity=0.141  Sum_probs=55.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC-hhhHHHHHHhhhhhhhhhcC-C------------CCccccccCCHH
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY-QATRLEKFVTAYGQFLKANG-E------------QPVTWKRASSMD  231 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~-~------------~~~~~~~~~~l~  231 (386)
                      .+|||+|+|.||+.+++.|...-+++|.+.... .......+...|++...... .            .........+++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            379999999999999998754456887766431 22211112111211100000 0            000011123555


Q ss_pred             HH-h--hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          232 EV-L--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       232 el-l--~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      ++ +  ..+|+|+.|+|.... .    +..-..++.|+..|.++-.
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~-~----e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTT-M----EKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCS-H----HHHGGGGGGTCSEEEESSC
T ss_pred             HCccccCCCCEEEECCCchhh-H----HHHHHHHhCCCeEEEeccC
Confidence            55 2  579999999996432 1    2223445678666666544

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.02  E-value=0.5  Score=45.84  Aligned_cols=107  Identities=13%  Similarity=0.134  Sum_probs=66.0

Q ss_pred             cccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          161 NLLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       161 ~~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      ..+.|.+|+++|=|  ++..+.+..+ ..||++|.+..|..-...+.+.+...+.....+   ..+....+++|.++++|
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~v~~~~d~~eav~~aD  252 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGA-AKMGMDIRLVGPQAYWPDEELVAACQAIAKQTG---GKITLTENVAEGVQGCD  252 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHH-HHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHHTTCS
T ss_pred             CCcCceEEEecCCCCcccchHHHHHH-HhcCceEEEeCCcccCCCHHHHHHHHHHHHHcC---CcceeccCHHHHhccCc
Confidence            46899999999954  7999999886 579999999987532111111110000011111   22334578999999999


Q ss_pred             EEEEccCCC----hhh---------hhcccHHHHhc-CCCCcEEEEc
Q 016620          239 VISLHPVLD----KTT---------YHLINKERLAT-MKKEAILVNC  271 (386)
Q Consensus       239 iVvl~lPlt----~~t---------~~li~~~~~~~-mk~gailIN~  271 (386)
                      +|..-.-..    ++.         ..-++.+.+++ .|++++|.-+
T Consensus       253 vvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~  299 (358)
T 4h31_A          253 FLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHC  299 (358)
T ss_dssp             EEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEEC
T ss_pred             EEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECC
Confidence            998644321    111         12367777775 4678887765

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.00  E-value=0.13  Score=48.86  Aligned_cols=102  Identities=17%  Similarity=0.278  Sum_probs=64.3

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      .+.|.+|+++|=   |++..+.+..+ ..||++|.+..|..-...+...+    ..+..|   ..+....+++|+++++|
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~eav~~aD  223 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVE----ELREKG---MKVVETTTLEDVIGKLD  223 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHH----HHHHTT---CCEEEESCTHHHHTTCS
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHH-HHCCCEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHhcCCC
Confidence            488999999998   48999999986 57999999998754321111111    111222   12333478999999999


Q ss_pred             EEEEccCCChh-----h------hhcccHHHHhcCCCCcEEEEc
Q 016620          239 VISLHPVLDKT-----T------YHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       239 iVvl~lPlt~~-----t------~~li~~~~~~~mk~gailIN~  271 (386)
                      +|..-.-..+.     .      ..-++.+.++.+|++++|.-+
T Consensus       224 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~  267 (308)
T 1ml4_A          224 VLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHP  267 (308)
T ss_dssp             EEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECC
T ss_pred             EEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECC
Confidence            99886543211     0      123455566666666655544

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.00  E-value=0.0088  Score=60.21  Aligned_cols=42  Identities=17%  Similarity=0.235  Sum_probs=36.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL  203 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~  203 (386)
                      .+++|++|.|+|.|.+|...++.| ...|++|.++|+......
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L-~~~ga~V~vi~~~~~~~~   49 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQF   49 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHH
T ss_pred             EECCCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEcCCCCHHH
Confidence            468999999999999999999998 579999999998765543

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.00  E-value=0.05  Score=54.31  Aligned_cols=117  Identities=16%  Similarity=0.257  Sum_probs=71.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCC---------hhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      .++.|++|.|.|+|++|+.+|+.| ...|++|+ +.|.+         ....+.++.+...      ...........+.
T Consensus       231 ~~l~g~~vaVqGfGnVG~~~a~~L-~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g------~i~~y~~a~~i~~  303 (440)
T 3aog_A          231 LQVEGARVAIQGFGNVGNAAARAF-HDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFG------GVRGYPKAEPLPA  303 (440)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTS------SSTTCTTSEECCH
T ss_pred             CCccCCEEEEeccCHHHHHHHHHH-HHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcC------CcccCCCceEcCc
Confidence            468999999999999999999998 57899998 44442         1122222111110      0000000112345


Q ss_pred             HHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       231 ~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++++ ..||+++-|..     .+.|+.+....++ ..+++-.+-+.+- .++ .+.|.+..+.
T Consensus       304 ~ei~~~~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA-~~iL~~~GI~  358 (440)
T 3aog_A          304 ADFWGLPVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAA-DDILLEKGVL  358 (440)
T ss_dssp             HHHTTCCCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHHTCE
T ss_pred             hhhhcCCCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHH-HHHHHHCCCE
Confidence            6665 47999998875     4456666666663 5688888888874 333 3455554443

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=96.00  E-value=0.021  Score=54.98  Aligned_cols=70  Identities=16%  Similarity=0.276  Sum_probs=45.4

Q ss_pred             CeEEEEecChhHH-HHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEE
Q 016620          166 QTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~-~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVv  241 (386)
                      .+|||||+|.||+ ..+..+++.-+++|. ++|++...   .+.+.+       +..  +...+.++++++..  .|+|+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~---~~a~~~-------~~~--~~~~~~~~~~ll~~~~~D~V~   70 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNE---KAAAPF-------KEK--GVNFTADLNELLTDPEIELIT   70 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCH---HHHHHH-------HTT--TCEEESCTHHHHSCTTCCEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHH---HHHHhh-------CCC--CCeEECCHHHHhcCCCCCEEE
Confidence            3799999999999 566666333378875 67876222   111111       001  12245789999986  89999


Q ss_pred             EccCCC
Q 016620          242 LHPVLD  247 (386)
Q Consensus       242 l~lPlt  247 (386)
                      +|+|..
T Consensus        71 i~tp~~   76 (349)
T 3i23_A           71 ICTPAH   76 (349)
T ss_dssp             ECSCGG
T ss_pred             EeCCcH
Confidence            999953

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.00  E-value=0.016  Score=54.64  Aligned_cols=105  Identities=10%  Similarity=0.092  Sum_probs=65.0

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEE
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (386)
                      ..+|+|+|+ |.+|+.+++.+ +..|.+++ .+||....                 ....+...+.+++|+..  ..|++
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l-~~~g~~~V~~V~p~~~g-----------------~~~~G~~vy~sl~el~~~~~~D~v   68 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGG-----------------TTHLGLPVFNTVREAVAATGATAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHHCCCEE
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCCccc-----------------ceeCCeeccCCHHHHhhcCCCCEE
Confidence            457999999 99999999987 45678743 56664210                 00011223578999988  89999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPM  291 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~-~vde~aL~~aL~~g~i  291 (386)
                      ++++|.. .....+ .+.++ .... .+|..+.|- .-+.+.|.++.++..+
T Consensus        69 iI~tP~~-~~~~~~-~ea~~-~Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv  116 (288)
T 2nu8_A           69 VIYVPAP-FCKDSI-LEAID-AGIK-LIITITEGIPTLDMLTVKVKLDEAGV  116 (288)
T ss_dssp             EECCCGG-GHHHHH-HHHHH-TTCS-EEEECCCCCCHHHHHHHHHHHHHHTC
T ss_pred             EEecCHH-HHHHHH-HHHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            9999952 223332 33333 2222 344455543 3345588888887544

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=95.99  E-value=0.005  Score=55.75  Aligned_cols=68  Identities=15%  Similarity=0.248  Sum_probs=42.4

Q ss_pred             CeEEEEecChhHHHHHHH-HHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~-L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|+|+|.|.+|+.+++. .....|+++. ++|.++...-           ..  .....+....++++++++.|+|++|
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g-----------~~--i~gv~V~~~~dl~eli~~~D~ViIA  152 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIG-----------TE--VGGVPVYNLDDLEQHVKDESVAILT  152 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTT-----------CE--ETTEEEEEGGGHHHHCSSCCEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHH-----------hH--hcCCeeechhhHHHHHHhCCEEEEe
Confidence            469999999999999993 2235577765 5676654310           00  1112223356789998777999999


Q ss_pred             cCC
Q 016620          244 PVL  246 (386)
Q Consensus       244 lPl  246 (386)
                      +|.
T Consensus       153 vPs  155 (215)
T 2vt3_A          153 VPA  155 (215)
T ss_dssp             SCH
T ss_pred             cCc
Confidence            994

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.99  E-value=0.014  Score=55.88  Aligned_cols=74  Identities=19%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCC--CCccccccCCHHHHhhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .++|+|+|.|.+|.++|..|+ ..|.  +|..+|...........+     +.....  ...... ..+ .+.+++||+|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~-~~~~~~ev~L~Di~~~~~~g~~~d-----l~~~~~~~~~~~i~-~~~-~~a~~~aDvV   78 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMA-LRQTANELVLIDVFKEKAIGEAMD-----INHGLPFMGQMSLY-AGD-YSDVKDCDVI   78 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHH-HTTCSSEEEEECCC---CCHHHHH-----HTTSCCCTTCEEEC---C-GGGGTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChHHHHHHHHH-----HHHhHHhcCCeEEE-ECC-HHHhCCCCEE
Confidence            358999999999999998875 4455  899999875321110111     111110  111111 223 5668999999


Q ss_pred             EEccCC
Q 016620          241 SLHPVL  246 (386)
Q Consensus       241 vl~lPl  246 (386)
                      +++.+.
T Consensus        79 ii~~g~   84 (318)
T 1y6j_A           79 VVTAGA   84 (318)
T ss_dssp             EECCCC
T ss_pred             EEcCCC
Confidence            999875

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.99  E-value=0.098  Score=52.25  Aligned_cols=173  Identities=17%  Similarity=0.176  Sum_probs=109.5

Q ss_pred             CCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc
Q 016620          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (386)
Q Consensus       108 ~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~  187 (386)
                      ..|++.|..-   +.+|=-+++-+|+.+|-                     .|+.+...+|.|.|.|.-|-.+|+.| ..
T Consensus       186 ~~ipvFnDD~---qGTA~V~lAgllnAlki---------------------~gk~l~d~riV~~GAGaAGigia~ll-~~  240 (487)
T 3nv9_A          186 CDIPVWHDDQ---QGTASVTLAGLLNALKL---------------------VKKDIHECRMVFIGAGSSNTTCLRLI-VT  240 (487)
T ss_dssp             CSSCEEETTT---HHHHHHHHHHHHHHHHH---------------------HTCCGGGCCEEEECCSHHHHHHHHHH-HH
T ss_pred             ccCCcccccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHH-HH
Confidence            3799999864   55677788888888882                     23678999999999999999999998 57


Q ss_pred             CCc---EEEEEcCCh-----hhHHHHHH-hhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHH
Q 016620          188 FKM---NLIYYDLYQ-----ATRLEKFV-TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (386)
Q Consensus       188 fg~---~V~~~d~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~  258 (386)
                      .|.   +++.+|+..     +..+..+. ..+...+..... +   ....+|.|+++.+|+++-+--.   ..+.++++.
T Consensus       241 ~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n-~---~~~~~L~eav~~adVlIG~S~~---~pg~ft~e~  313 (487)
T 3nv9_A          241 AGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTN-P---SKFGSIAEACVGADVLISLSTP---GPGVVKAEW  313 (487)
T ss_dssp             TTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSC-T---TCCCSHHHHHTTCSEEEECCCS---SCCCCCHHH
T ss_pred             cCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcc-c---ccCCCHHHHHhcCCEEEEeccc---CCCCCCHHH
Confidence            888   799999752     11111100 000000111000 0   0235899999999987755411   147899999


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCC
Q 016620          259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (386)
Q Consensus       259 ~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (386)
                      ++.|.+..++.=.|....  |-.=.+|.+.|+..-|  .  ..-+.|    =+..|+++-|-++
T Consensus       314 V~~Ma~~PIIFaLSNPtp--Ei~pe~A~~~G~aIvA--T--Grsd~P----nQ~NN~liFPGI~  367 (487)
T 3nv9_A          314 IKSMGEKPIVFCCANPVP--EIYPYEAKEAGAYIVA--T--GRGDFP----NQVNNSVGFPGIL  367 (487)
T ss_dssp             HHTSCSSCEEEECCSSSC--SSCHHHHHHTTCSEEE--E--SCTTSS----SBCCGGGTHHHHH
T ss_pred             HHhhcCCCEEEECCCCCc--cCCHHHHHHhCCEEEE--E--CCCCCc----ccCcceeEcchhh
Confidence            999999999998887654  2112223335542111  1  111111    2566888888654

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=95.99  E-value=0.59  Score=44.36  Aligned_cols=113  Identities=14%  Similarity=0.155  Sum_probs=69.4

Q ss_pred             ccC-CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          162 LLK-GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       162 ~l~-g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+. |.+|+++|= +++..+.+..+ ..||++|.+..|..-...+.+.+...+..+..|   ..+....+++|.++++|+
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~~~~~~d~~eav~~aDv  217 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITA-AILGFEISIAMPKNYKISPEIWEFAMKQALISG---AKISLGYDKFEALKDKDV  217 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHHHTTCSE
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhcCCCE
Confidence            377 999999996 56777787776 478999999987532111111110000000111   223345799999999999


Q ss_pred             EEEccCCC--h--h--------hhhcccHHHHhcCCCCcEEEEcC---CCcccC
Q 016620          240 ISLHPVLD--K--T--------TYHLINKERLATMKKEAILVNCS---RGPVID  278 (386)
Q Consensus       240 Vvl~lPlt--~--~--------t~~li~~~~~~~mk~gailIN~a---Rg~~vd  278 (386)
                      |..-.-..  .  +        ...-++.+.++.+|++++|.-+.   ||.=|+
T Consensus       218 vyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~  271 (307)
T 3tpf_A          218 VITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVS  271 (307)
T ss_dssp             EEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBC
T ss_pred             EEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeC
Confidence            98765211  0  1        12346888888889888887764   554443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.96  E-value=0.013  Score=52.69  Aligned_cols=76  Identities=14%  Similarity=0.157  Sum_probs=50.5

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCC-CCcc-ccccCCHHHHhhhC
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVT-WKRASSMDEVLREA  237 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~l~ell~~a  237 (386)
                      ..+.|++|.|.|. |.||+.+++.|+ .-|.+|++.+|+......         +...+. .... ... .++.+.+..+
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~-~~G~~V~~~~R~~~~~~~---------~~~~~~~~~~~~Dl~-~~~~~~~~~~   85 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELK-NKGHEPVAMVRNEEQGPE---------LRERGASDIVVANLE-EDFSHAFASI   85 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSGGGHHH---------HHHTTCSEEEECCTT-SCCGGGGTTC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHH-hCCCeEEEEECChHHHHH---------HHhCCCceEEEcccH-HHHHHHHcCC
Confidence            5689999999998 999999999984 679999999998754221         111111 0000 001 5667888999


Q ss_pred             CEEEEccCCC
Q 016620          238 DVISLHPVLD  247 (386)
Q Consensus       238 DiVvl~lPlt  247 (386)
                      |+|+.+....
T Consensus        86 D~vi~~ag~~   95 (236)
T 3e8x_A           86 DAVVFAAGSG   95 (236)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999888754

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.96  E-value=0.021  Score=53.55  Aligned_cols=40  Identities=25%  Similarity=0.244  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|++.+++...
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFA-KEGANIAIAYLDEEG   83 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchH
Confidence            4689999999987 889999999985 679999999887653

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.94  E-value=0.023  Score=56.72  Aligned_cols=87  Identities=13%  Similarity=0.202  Sum_probs=64.0

Q ss_pred             ccCCCeEEEEecC----------hhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       162 ~l~g~~vgIvG~G----------~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      .+.|++|+|+|+-          +-...+++.| ... |++|.+|||.....                      ....++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L-~~~~g~~V~~~DP~~~~~----------------------~~~~~~  368 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELL-NQEPDIEVCAYDPHVELD----------------------FVEHDM  368 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHH-HHSTTCEEEEECSSCCCT----------------------TBCSTT
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHH-HhhcCCEEEEECCCcccc----------------------cccCCH
Confidence            4789999999984          4578899988 577 99999999976431                      124578


Q ss_pred             HHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       231 ~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      ++.++.||.|+++++- ++-+. ++.+.++.|+ +.+++|. |+-
T Consensus       369 ~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~-~~~i~D~-r~~  409 (431)
T 3ojo_A          369 SHAVKDASLVLILSDH-SEFKN-LSDSHFDKMK-HKVIFDT-KNV  409 (431)
T ss_dssp             HHHHTTCSEEEECSCC-GGGTS-CCGGGGTTCS-SCEEEES-SCC
T ss_pred             HHHHhCCCEEEEecCC-HHHhc-cCHHHHHhCC-CCEEEEC-CCC
Confidence            8999999999999975 33333 3444556676 6688885 543

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=95.94  E-value=0.18  Score=48.53  Aligned_cols=156  Identities=15%  Similarity=0.094  Sum_probs=90.8

Q ss_pred             cEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 016620           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (386)
Q Consensus        88 k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~  167 (386)
                      ..|+.+.-.-..+. ..++..+|+|.|.-+....++  .+++=++.+.+++                     | .+.|.+
T Consensus       127 D~IviR~~~~~~~~-~lA~~~~vPVINag~~~~HPt--QaLaDl~TI~E~~---------------------G-~l~glk  181 (340)
T 4ep1_A          127 DGIMIRTFSHADVE-ELAKESSIPVINGLTDDHHPC--QALADLMTIYEET---------------------N-TFKGIK  181 (340)
T ss_dssp             SEEEEECSCHHHHH-HHHHHCSSCEEEEECSSCCHH--HHHHHHHHHHHHH---------------------S-CCTTCE
T ss_pred             CEEEEecCChhHHH-HHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh---------------------C-CCCCCE
Confidence            56666654433332 334567899999655332221  2333333333321                     1 388999


Q ss_pred             EEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCC
Q 016620          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (386)
Q Consensus       168 vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPl  246 (386)
                      |+++|= +++..+.+..+ ..||++|.+..|..-...+.+.+...+..+..|   ..+....+++|+++++|+|..-.-.
T Consensus       182 va~vGD~~nva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDVvyt~~w~  257 (340)
T 4ep1_A          182 LAYVGDGNNVCHSLLLAS-AKVGMHMTVATPVGYRPNEEIVKKALAIAKETG---AEIEILHNPELAVNEADFIYTDVWM  257 (340)
T ss_dssp             EEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHC---CCEEEESCHHHHHTTCSEEEECCC-
T ss_pred             EEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhCCCCEEEecCcc
Confidence            999986 56777888776 478999999887532111111110000001112   1233457899999999999876543


Q ss_pred             Ch------h-----hhhcccHHHHhcCCCCcEEEEcC
Q 016620          247 DK------T-----TYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       247 t~------~-----t~~li~~~~~~~mk~gailIN~a  272 (386)
                      ..      +     ...-++.+.++.+|++++|.-+.
T Consensus       258 smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL  294 (340)
T 4ep1_A          258 SMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL  294 (340)
T ss_dssp             -----CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             CCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence            21      0     12357888899899999888765

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=95.91  E-value=0.0097  Score=57.80  Aligned_cols=95  Identities=16%  Similarity=0.215  Sum_probs=63.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHHhhhCCEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  240 (386)
                      .|++|.|+|.|.||...++.+ +.+|++|++.+++.......        .+..+...  .....+   +.++....|+|
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~--------~~~lGa~~--v~~~~~~~~~~~~~~~~D~v  255 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFA-KAFGSKVTVISTSPSKKEEA--------LKNFGADS--FLVSRDQEQMQAAAGTLDGI  255 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGHHHH--------HHTSCCSE--EEETTCHHHHHHTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--------HHhcCCce--EEeccCHHHHHHhhCCCCEE
Confidence            688999999999999999985 78999999999876542110        01222211  111122   23334468999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      +.++.....     -...++.|+++..+|+++..
T Consensus       256 id~~g~~~~-----~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          256 IDTVSAVHP-----LLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             EECCSSCCC-----SHHHHHHEEEEEEEEECCCC
T ss_pred             EECCCcHHH-----HHHHHHHHhcCCEEEEEccC
Confidence            998874321     24567788889899998753

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=95.91  E-value=0.13  Score=49.95  Aligned_cols=155  Identities=15%  Similarity=0.129  Sum_probs=91.3

Q ss_pred             cEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 016620           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (386)
Q Consensus        88 k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~  167 (386)
                      ..|+.++-+-..+. ..++-.+|+|.|.-+....++  .+|+=++.+.+++                     | .+.|.+
T Consensus       128 D~IviR~~~~~~~~-~lA~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~~---------------------G-~l~glk  182 (365)
T 4amu_A          128 DGIEFRGFAQSDVD-ALVKYSGVPVWNGLTDDEHPT--QIIADFMTMKEKF---------------------G-NLKNKK  182 (365)
T ss_dssp             SEEEEECSCHHHHH-HHHHHHCSCEEEEECSSCCHH--HHHHHHHHHHHHH---------------------S-SCTTCE
T ss_pred             cEEEEecCChhHHH-HHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh---------------------C-CCCCCE
Confidence            66777754433332 334556899999755432221  2333333333311                     1 388999


Q ss_pred             EEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhhH--HHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          168 VGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       168 vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      |+++|=|  +++.+.+..+ ..||++|.+..|..-..  .+.+.+...+..+..+   ..+....+++|+++++|+|..-
T Consensus       183 va~vGD~~nnva~Sl~~~~-~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g---~~i~~~~d~~eav~~aDVVytd  258 (365)
T 4amu_A          183 IVFIGDYKNNVGVSTMIGA-AFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG---GSLRFSTDKILAAQDADVIYTD  258 (365)
T ss_dssp             EEEESSTTSHHHHHHHHHH-HHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS---CEEEEESCHHHHTTTCSEEEEC
T ss_pred             EEEECCCCcchHHHHHHHH-HHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC---CEEEEECCHHHHhcCCCEEEec
Confidence            9999987  7888888886 47999999998753221  1111110000011111   1233457999999999999874


Q ss_pred             cC----CChh---h------hhcccHHHHhcCCCCcEEEEc
Q 016620          244 PV----LDKT---T------YHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       244 lP----lt~~---t------~~li~~~~~~~mk~gailIN~  271 (386)
                      +-    ...+   .      ..-++.+.++.+|++++|.-+
T Consensus       259 ~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHc  299 (365)
T 4amu_A          259 VWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHC  299 (365)
T ss_dssp             CSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEEC
T ss_pred             ccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECC
Confidence            32    1111   0      134688888888888888765

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.91  E-value=0.017  Score=55.25  Aligned_cols=96  Identities=13%  Similarity=0.170  Sum_probs=62.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh----hhCCE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----READV  239 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~~aDi  239 (386)
                      .|++|.|+|.|.||..+++.+ +.+|++|++.+++.....  +       .++.+..........++.+.+    ...|+
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~-------~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~  233 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKLE--L-------AKELGADLVVNPLKEDAAKFMKEKVGGVHA  233 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH--H-------HHHTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHH--H-------HHHCCCCEEecCCCccHHHHHHHHhCCCCE
Confidence            578999999999999999985 789999999998765421  1       112222111001112333322    35899


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      |+.+....+ +    -...++.++++..++.++..
T Consensus       234 vid~~g~~~-~----~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          234 AVVTAVSKP-A----FQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             EEESSCCHH-H----HHHHHHHEEEEEEEEECCCC
T ss_pred             EEECCCCHH-H----HHHHHHHhhcCCEEEEeccc
Confidence            998886322 1    24567778889899988753

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.90  E-value=0.019  Score=54.90  Aligned_cols=103  Identities=17%  Similarity=0.243  Sum_probs=57.7

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|+|.|.+|.+++..|+. +..-++..+|...........+.-+. . ... .+....  .+..+.++.||+|+++.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~-~-~~~-~~~~v~--~~~~~a~~~aDvVii~a   80 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDA-Q-AFT-APKKIY--SGEYSDCKDADLVVITA   80 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGG-G-GGS-CCCEEE--ECCGGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHH-H-Hhc-CCeEEE--ECCHHHhCCCCEEEECC
Confidence            689999999999999987753 33348999999754321111111000 0 011 111121  23466789999999998


Q ss_pred             CCChh---hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016620          245 VLDKT---TY--------HLIN--KERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 Plt~~---t~--------~li~--~~~~~~mk~gailIN~aR  273 (386)
                      +....   ++        .++.  .+.+....|.+++++++-
T Consensus        81 g~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  122 (318)
T 1ez4_A           81 GAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (318)
T ss_dssp             CC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            65321   11        1111  022333468899999843

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=95.89  E-value=0.016  Score=57.04  Aligned_cols=97  Identities=14%  Similarity=0.107  Sum_probs=67.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .-.++-|+|.|.+|+++|+.+ +.+|++|+++|++..-.                          + .+-+..+|-++..
T Consensus       203 P~~rL~IfGAGhva~ala~~a-~~lg~~V~v~D~R~~~~--------------------------~-~~~fp~a~~~~~~  254 (386)
T 2we8_A          203 PRPRMLVFGAIDFAAAVAQQG-AFLGYRVTVCDARPVFA--------------------------T-TARFPTADEVVVD  254 (386)
T ss_dssp             CCCEEEEECCSTHHHHHHHHH-HHTTCEEEEEESCTTTS--------------------------C-TTTCSSSSEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCchhhc--------------------------c-cccCCCceEEEeC
Confidence            345899999999999999986 79999999999865320                          0 1113456655555


Q ss_pred             cCCChhhhhcccHHHHh---cCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEE
Q 016620          244 PVLDKTTYHLINKERLA---TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~---~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaa  295 (386)
                      .|.  +   .+..  +.   .+.+++++|=+.++.-.|...|..+|+++.....+
T Consensus       255 ~p~--~---~~~~--~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          255 WPH--R---YLAA--QAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             CHH--H---HHHH--HHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             ChH--H---HHHh--hccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence            541  1   1111  11   26788899999999989999999999886333333

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=95.87  E-value=0.013  Score=54.07  Aligned_cols=105  Identities=20%  Similarity=0.210  Sum_probs=62.8

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HH-----------HHhhhhhhhhhcCCCCcccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EK-----------FVTAYGQFLKANGEQPVTWK  225 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~-----------~~~~~~~~~~~~~~~~~~~~  225 (386)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-..  + .+           ..+...+.+.+.. ......
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La-~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n-p~~~v~  101 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLA-GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLN-PDIQLT  101 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHH-HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHC-TTSEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHH-HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHC-CCCEEE
Confidence            4689999999999999999999985 6676 788887643110  0 00           0000000111100 000011


Q ss_pred             c------cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          226 R------ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       226 ~------~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      .      ..+++++++++|+|+.++. +.+++.++++.....   +.-+|..
T Consensus       102 ~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~  149 (251)
T 1zud_1          102 ALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITA  149 (251)
T ss_dssp             EECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEE
T ss_pred             EEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEE
Confidence            0      1245678899999999987 577888888776653   3335554

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.86  E-value=0.02  Score=55.03  Aligned_cols=108  Identities=19%  Similarity=0.262  Sum_probs=60.0

Q ss_pred             CCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .++|+|+|.|.+|.+++..|+. +..-++..+|...........+.-+. . ... .+....  .+..+.++.||+|+++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~-~-~~~-~~~~i~--~~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNA-L-PFT-SPKKIY--SAEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTT-G-GGS-CCCEEE--ECCGGGGGGCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHH-H-Hhc-CCeEEE--ECCHHHhCCCCEEEEc
Confidence            4689999999999999987743 33348999999754321111111000 0 001 111121  2346678999999999


Q ss_pred             cCCChh---hh--------hccc--HHHHhcCCCCcEEEEcCCCcccCH
Q 016620          244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       244 lPlt~~---t~--------~li~--~~~~~~mk~gailIN~aRg~~vde  279 (386)
                      .+....   ++        .++.  .+.+....|.+++++++  ..+|.
T Consensus        84 ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~  130 (326)
T 2zqz_A           84 AGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDI  130 (326)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS--SSHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CcHHH
Confidence            865321   11        1110  01222236889999984  34444

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.85  E-value=0.055  Score=51.89  Aligned_cols=69  Identities=16%  Similarity=0.209  Sum_probs=47.8

Q ss_pred             CeEEEEecC-hhHHHHHHHHHhc-CCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEE
Q 016620          166 QTVGVIGAG-RIGSAYARMMVEG-FKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (386)
Q Consensus       166 ~~vgIvG~G-~IG~~iA~~L~~~-fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (386)
                      .+|||||+| .+|+..++.+.+. -++++ .++|++.... +++.+.|       +.    ...+.+++++++  +.|+|
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~V   86 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHA-EEFAKMV-------GN----PAVFDSYEELLESGLVDAV   86 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHH-HHHHHHH-------SS----CEEESCHHHHHHSSCCSEE
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHH-HHHHHHh-------CC----CcccCCHHHHhcCCCCCEE
Confidence            479999999 8999999887432 36776 5778876542 2222222       11    123578999997  58999


Q ss_pred             EEccCC
Q 016620          241 SLHPVL  246 (386)
Q Consensus       241 vl~lPl  246 (386)
                      ++|+|.
T Consensus        87 ~i~tp~   92 (340)
T 1zh8_A           87 DLTLPV   92 (340)
T ss_dssp             EECCCG
T ss_pred             EEeCCc
Confidence            999995

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.85  E-value=0.013  Score=56.64  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=25.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhc--CCcEEEEEcC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~--fg~~V~~~d~  197 (386)
                      .+|||+|+|.||+.+.|.|...  -.++|.+.+.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            3799999999999999987433  3578876654

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=95.85  E-value=0.0078  Score=58.40  Aligned_cols=95  Identities=14%  Similarity=0.167  Sum_probs=62.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh---hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh----
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----  234 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----  234 (386)
                      .+.|++|.|+|.|.||..+++.+ +.+|++|++.+++.   ...  ++...       .+.... . .. ++.+.+    
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~--~~~~~-------~ga~~v-~-~~-~~~~~~~~~~  244 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLF-RTYGLEVWMANRREPTEVEQ--TVIEE-------TKTNYY-N-SS-NGYDKLKDSV  244 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHH-HHHTCEEEEEESSCCCHHHH--HHHHH-------HTCEEE-E-CT-TCSHHHHHHH
T ss_pred             cCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCccchHHH--HHHHH-------hCCcee-c-hH-HHHHHHHHhC
Confidence            46799999999999999999985 78999999999875   332  11111       121111 0 01 221222    


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ...|+|+.+.......   + ...++.|+++..+|+++-
T Consensus       245 ~~~d~vid~~g~~~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          245 GKFDVIIDATGADVNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             CCEEEEEECCCCCTHH---H-HHHGGGEEEEEEEEECSC
T ss_pred             CCCCEEEECCCChHHH---H-HHHHHHHhcCCEEEEEec
Confidence            3589999998753221   0 456778889989998865

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.85  E-value=0.029  Score=58.16  Aligned_cols=142  Identities=14%  Similarity=0.137  Sum_probs=83.0

Q ss_pred             cEEecCCCC-CchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC
Q 016620          110 IAVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (386)
Q Consensus       110 I~v~n~~~~-~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f  188 (386)
                      -.+.+-... .....||.+.-+-|.+.|             |.-|...  ....|++++|.|||+|.+|..+|+.|+ ..
T Consensus       285 ~~~~~l~~~~dp~~la~~~~~Lnlklm~-------------wRllp~~--g~ekL~~arVLIVGaGGLGs~vA~~La-~a  348 (615)
T 4gsl_A          285 PRVVDLSSLLDPLKIADQSVDLNLKLMK-------------WRILPDL--NLDIIKNTKVLLLGAGTLGCYVSRALI-AW  348 (615)
T ss_dssp             CEEEECHHHHCHHHHHHHHHHHHHHHHH-------------HHTCTTC--CHHHHHTCEEEEECCSHHHHHHHHHHH-HT
T ss_pred             eeEEeccccCCHHHHHhhhhhhhhHHHH-------------Hhhcchh--hHHHHhCCeEEEECCCHHHHHHHHHHH-Hc
Confidence            455554443 566778877777666665             3223211  114689999999999999999999985 56


Q ss_pred             Cc-EEEEEcCChhhH--H-HH-----------HHhhhhhhhhhcCCCCccccc---------------------cCCHHH
Q 016620          189 KM-NLIYYDLYQATR--L-EK-----------FVTAYGQFLKANGEQPVTWKR---------------------ASSMDE  232 (386)
Q Consensus       189 g~-~V~~~d~~~~~~--~-~~-----------~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~e  232 (386)
                      |. ++..+|...-..  + ++           ..+...+.+++... ......                     ...+++
T Consensus       349 GVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP-~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~  427 (615)
T 4gsl_A          349 GVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFP-LMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRA  427 (615)
T ss_dssp             TCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCT-TCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCC-CcEEEEeeccccccCccccchhhhcCCHHHHHH
Confidence            66 788888753100  0 00           00000011111110 011111                     123567


Q ss_pred             HhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       233 ll~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +++++|+|+.|+- +.+++.+++.....   .+..+|+.+
T Consensus       428 ll~~~DlVvd~tD-n~~tR~~ln~~c~~---~~~PlI~aa  463 (615)
T 4gsl_A          428 LIKEHDIIFLLVD-SRESRWLPSLLSNI---ENKTVINAA  463 (615)
T ss_dssp             HHHHCSEEEECCS-SGGGTHHHHHHHHH---TTCEEEEEE
T ss_pred             HhhcCCEEEecCC-CHHHHHHHHHHHHH---cCCeEEEEE
Confidence            8899999999985 56788888876654   344566654

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=95.84  E-value=0.011  Score=56.85  Aligned_cols=95  Identities=16%  Similarity=0.089  Sum_probs=60.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh------h
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (386)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++.....  +       .++.+..........++.+.+.      .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~~--~-------~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g  236 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVA-KASGAYPVIVSEPSDFRRE--L-------AKKVGADYVINPFEEDVVKEVMDITDGNG  236 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHHH--H-------HHHHTCSEEECTTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--H-------HHHhCCCEEECCCCcCHHHHHHHHcCCCC
Confidence            789999999999999999985 78999 9999998754321  1       1111221111111123433332      4


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+.+....+ +    -...++.++++..++.++.
T Consensus       237 ~D~vid~~g~~~-~----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          237 VDVFLEFSGAPK-A----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEEEECSCCHH-H----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCCHH-H----HHHHHHHHhcCCEEEEEcc
Confidence            788888886321 1    1455677788888888764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=95.84  E-value=0.035  Score=54.50  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=61.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh------
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------  235 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------  235 (386)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++.....  +.       ++.+..........++.+.+.      
T Consensus       212 ~~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~~-------~~lGa~~vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          212 RPGDNVVILGGGPIGLAAVAIL-KHAGASKVILSEPSEVRRN--LA-------KELGADHVIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHHHH--HH-------HHHTCSEEECTTTSCHHHHHHHHTTTC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HH-------HHcCCCEEEcCCCCCHHHHHHHHhCCC
Confidence            4688999999999999999985 79999 9999998765421  11       122322111111123333322      


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ..|+|+-++.....+...+..-.+..++++..++.++-
T Consensus       282 g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          282 GAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence            48999998875322222211111233488888888864

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.84  E-value=0.027  Score=56.59  Aligned_cols=98  Identities=13%  Similarity=0.136  Sum_probs=67.0

Q ss_pred             ccccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 016620          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (386)
Q Consensus       160 g~~l~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (386)
                      +..+.|++|+|+|+-          +-...+++.| ...|++|.+|||........   .|+          .......+
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~----------~~~~~~~~  378 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKL-LEVGCRVRVYDPVAMKEAQK---RLG----------DKVEYTTD  378 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSCHHHHHH---HHG----------GGSEECSS
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCcHHHHH---hcC----------ccceecCC
Confidence            346899999999984          4578899998 68999999999987542221   110          01123468


Q ss_pred             HHHHhhhCCEEEEccCCChhhhhcccHHH-HhcCCCCcEEEEcCCCc
Q 016620          230 MDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSRGP  275 (386)
Q Consensus       230 l~ell~~aDiVvl~lPlt~~t~~li~~~~-~~~mk~gailIN~aRg~  275 (386)
                      +++.++.+|.|+++++- ++-+. ++-+. .+.|+ +.+++|. |+-
T Consensus       379 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          379 MYDAVRGAEALFHVTEW-KEFRM-PDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             HHHHTTTCSCEEECSCC-GGGSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred             HHHHhcCCCEEEEccCC-HHHhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence            89999999999999975 33333 34444 44566 5688885 543

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.79  E-value=0.032  Score=53.87  Aligned_cols=80  Identities=15%  Similarity=0.195  Sum_probs=43.7

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhh-hhhhh-cC---CCCccccccCCHHHHhhhCCEE
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYG-QFLKA-NG---EQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~~~~~~~~~~~~~~~-~~~~~-~~---~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      +|||+|+|.||+.+++.|...-++++.+. |++.... ......+. ..... ..   ....+.....++++++.++|+|
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~-~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYE-AFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHH-HHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHH-HHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            79999999999999998753346776644 5543221 11000000 00000 00   0000011123566777889999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      +.|+|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999964

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=95.79  E-value=0.12  Score=51.26  Aligned_cols=117  Identities=19%  Similarity=0.206  Sum_probs=71.5

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhc-CCcEEEE-EcCC---------hhhHHHHHHhhhhhhhhhcCCCCccccccC
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIY-YDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~-fg~~V~~-~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (386)
                      |.++.|++|.|.|+|++|+..|+.| .. .|++|+. .|.+         ....+.++.+..      ............
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L-~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~------g~l~~y~~a~~~  276 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLI-SQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEH------GTVVTYPKGERI  276 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHS------SCSTTCSSSEEE
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHH-HHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhh------CCcccCCCceEc
Confidence            3579999999999999999999987 56 8999984 4432         111122211110      000000000122


Q ss_pred             CHHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          229 SMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       229 ~l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      +.++++ ..||+++-|..     .+.|+.+....++ ..+++-.+-+.+- .++- +.|.+..+
T Consensus       277 ~~~eil~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a~-~~l~~~Gi  332 (415)
T 2tmg_A          277 TNEELLELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEAD-EILSRRGI  332 (415)
T ss_dssp             CHHHHTTCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHHH-HHHHHTTC
T ss_pred             CchhhhcCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHHH-HHHHHCCC
Confidence            455655 48999998886     4556777777774 5588888888874 3333 44555443

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.78  E-value=0.017  Score=54.09  Aligned_cols=39  Identities=18%  Similarity=0.296  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ++.|+++.|+| .|.||+++++.|+ ..|++|++++|+...
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L~-~~G~~V~i~~R~~~~  155 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALLA-GEGAEVVLCGRKLDK  155 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHH-HCcCEEEEEECCHHH
Confidence            47889999999 9999999999984 789999999997643

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.78  E-value=0.058  Score=52.24  Aligned_cols=69  Identities=14%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             CCeEEEEecChhHH-HHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEE
Q 016620          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~-~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiV  240 (386)
                      -.+|||||+|.+|. .++..+ +.-++++. ++|++.... +.+.+.|       +.    ...+.++++++++  .|+|
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~-~~~~~~lvav~d~~~~~a-~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~V   92 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCL-LRAGARLAGFHEKDDALA-AEFSAVY-------AD----ARRIATAEEILEDENIGLI   92 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHH-HHTTCEEEEEECSCHHHH-HHHHHHS-------SS----CCEESCHHHHHTCTTCCEE
T ss_pred             CcEEEEECcCHHHHHHHHHHh-hcCCcEEEEEEcCCHHHH-HHHHHHc-------CC----CcccCCHHHHhcCCCCCEE
Confidence            35899999999995 566665 45688855 678876542 2222221       11    1235799999975  8999


Q ss_pred             EEccCC
Q 016620          241 SLHPVL  246 (386)
Q Consensus       241 vl~lPl  246 (386)
                      ++|+|.
T Consensus        93 ~I~tp~   98 (361)
T 3u3x_A           93 VSAAVS   98 (361)
T ss_dssp             EECCCH
T ss_pred             EEeCCh
Confidence            999994

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.77  E-value=0.019  Score=53.84  Aligned_cols=96  Identities=18%  Similarity=0.239  Sum_probs=57.3

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|+|+| +|.||+.+++.+...-++++.+ +|+........  + .   ..-.+... +.....++++++.++|+|+-+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~--d-~---gel~g~~~-gv~v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ--D-A---GAFLGKQT-GVALTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTS--B-T---TTTTTCCC-SCBCBCCHHHHHHHCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccc--c-H---HHHhCCCC-CceecCCHHHHhcCCCEEEEc
Confidence            5799999 8999999999875566888776 68764321000  0 0   00001111 233457999999999999998


Q ss_pred             cCCChhh-hhcccHHHHhcCCCCcEEEEcCCC
Q 016620          244 PVLDKTT-YHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       244 lPlt~~t-~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      .+  ++. ...+ .   ..++.|.-+|-...|
T Consensus        81 T~--p~a~~~~~-~---~al~~G~~vVigTTG  106 (272)
T 4f3y_A           81 TL--PEGTLVHL-D---AALRHDVKLVIGTTG  106 (272)
T ss_dssp             SC--HHHHHHHH-H---HHHHHTCEEEECCCC
T ss_pred             CC--HHHHHHHH-H---HHHHcCCCEEEECCC
Confidence            75  332 2221 1   223455556655555

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.74  E-value=0.016  Score=59.91  Aligned_cols=107  Identities=16%  Similarity=0.190  Sum_probs=63.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--H-HH-----------HHhhhhhhhhhcC-CCCccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-EK-----------FVTAYGQFLKANG-EQPVTW  224 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~-~~-----------~~~~~~~~~~~~~-~~~~~~  224 (386)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|...-+.  + ++           ..+...+.+++.. ......
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~  401 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATG  401 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-TTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEE
Confidence            5689999999999999999999985 6676 788887542100  0 00           0000001111110 000000


Q ss_pred             c-------------------ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          225 K-------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       225 ~-------------------~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      .                   ....++++++++|+|+.|+. +.+++.+++......   +..+|+.+
T Consensus       402 ~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa  464 (598)
T 3vh1_A          402 VKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  464 (598)
T ss_dssp             ECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             EeccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence            0                   01235678899999999986 567788887765543   34566654

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=95.74  E-value=0.013  Score=51.29  Aligned_cols=95  Identities=16%  Similarity=0.142  Sum_probs=58.6

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH-HHh-----hh
Q 016620          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVL-----RE  236 (386)
Q Consensus       164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-ell-----~~  236 (386)
                      .|++|.|+| .|.||+.+++.+ +..|++|++.+++......         .+..+..........+.. ++.     ..
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~~~---------~~~~g~~~~~d~~~~~~~~~~~~~~~~~~  107 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKREM---------LSRLGVEYVGDSRSVDFADEILELTDGYG  107 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHHHH---------HHTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEeeCCChHHHHHHHHH-HHcCCEEEEEeCCHHHHHH---------HHHcCCCEEeeCCcHHHHHHHHHHhCCCC
Confidence            678999999 699999999986 6789999999987543211         111121111000111222 221     13


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      .|+|+.+..  .++    -...++.|+++..+|+++..
T Consensus       108 ~D~vi~~~g--~~~----~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          108 VDVVLNSLA--GEA----IQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             EEEEEECCC--THH----HHHHHHTEEEEEEEEECSCG
T ss_pred             CeEEEECCc--hHH----HHHHHHHhccCCEEEEEcCC
Confidence            688887764  121    25667788888888888653

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=95.70  E-value=0.018  Score=55.74  Aligned_cols=68  Identities=21%  Similarity=0.297  Sum_probs=43.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC--------CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGF--------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~f--------g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  235 (386)
                      -+|||||+|.||+.-++.+ +..        +++|. ++|++.... +++.+.|       +.    ...+.+++++++ 
T Consensus        26 irvgiIG~G~ig~~H~~a~-~~~~~~~~~~~~~~lvav~d~~~~~a-~~~a~~~-------g~----~~~y~d~~ell~~   92 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAW-NAVKTVFGDVERPRLVHLAEANAGLA-EARAGEF-------GF----EKATADWRALIAD   92 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTHHHHHCSSCCCEEEEEECC--TTH-HHHHHHH-------TC----SEEESCHHHHHHC
T ss_pred             ccEEEEcCCHHHHHHHHHH-HhhhhhhccCCCcEEEEEECCCHHHH-HHHHHHh-------CC----CeecCCHHHHhcC
Confidence            4799999999999877654 222        45655 568776432 2222222       11    123579999996 


Q ss_pred             -hCCEEEEccCC
Q 016620          236 -EADVISLHPVL  246 (386)
Q Consensus       236 -~aDiVvl~lPl  246 (386)
                       +.|+|++|+|.
T Consensus        93 ~~iDaV~IatP~  104 (393)
T 4fb5_A           93 PEVDVVSVTTPN  104 (393)
T ss_dssp             TTCCEEEECSCG
T ss_pred             CCCcEEEECCCh
Confidence             47899999995

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=95.67  E-value=0.015  Score=55.81  Aligned_cols=62  Identities=13%  Similarity=0.192  Sum_probs=45.2

Q ss_pred             CCeEEEEecChhHH-HHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh---CCE
Q 016620          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADV  239 (386)
Q Consensus       165 g~~vgIvG~G~IG~-~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~---aDi  239 (386)
                      -.+|||||+|.||+ ..++.+++.-+++|. ++|++...                  .  +...+.+++++++.   .|+
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~------------------~--g~~~~~~~~~ll~~~~~vD~   84 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV------------------E--GVNSYTTIEAMLDAEPSIDA   84 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC------------------T--TSEEESSHHHHHHHCTTCCE
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh------------------c--CCCccCCHHHHHhCCCCCCE
Confidence            35899999999999 688877433477865 56765421                  1  12245799999976   899


Q ss_pred             EEEccCC
Q 016620          240 ISLHPVL  246 (386)
Q Consensus       240 Vvl~lPl  246 (386)
                      |++++|.
T Consensus        85 V~i~tp~   91 (330)
T 4ew6_A           85 VSLCMPP   91 (330)
T ss_dssp             EEECSCH
T ss_pred             EEEeCCc
Confidence            9999994

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=95.63  E-value=0.06  Score=52.11  Aligned_cols=96  Identities=19%  Similarity=0.092  Sum_probs=62.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc--CCHHHHhh----
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLR----  235 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ell~----  235 (386)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.....  +       .++.+.........  .++.+.+.    
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~~--~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~  260 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDLNPDKFE--K-------AKVFGATDFVNPNDHSEPISQVLSKMTN  260 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--H-------HHHTTCCEEECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHHH--H-------HHHhCCceEEeccccchhHHHHHHHHhC
Confidence            3688999999999999999985 78999 8999987765421  1       12223221111111  23544443    


Q ss_pred             -hCCEEEEccCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016620          236 -EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (386)
Q Consensus       236 -~aDiVvl~lPlt~~t~~li~~~~~~~mk~g-ailIN~aR  273 (386)
                       ..|+|+-+.... ++    -...++.++++ ..++.++-
T Consensus       261 ~g~D~vid~~g~~-~~----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          261 GGVDFSLECVGNV-GV----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             SCBSEEEECSCCH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCCEEEECCCCH-HH----HHHHHHHhhcCCcEEEEEcC
Confidence             479999888642 21    24567888998 88888864

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=95.62  E-value=0.019  Score=55.26  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=45.4

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCc--------cccccCCHHHHhhhC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPV--------TWKRASSMDEVLREA  237 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~ell~~a  237 (386)
                      +|||+|+|.||+.+++.+...-++++.+ +|++.+. .......++ . ...+..+.        ......+.++++.++
T Consensus         4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~-~~~~~~~~g-~-~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~v   80 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF-EAYRAKELG-I-PVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH-HHHHHHHTT-C-CEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHH-HHHHHHhcC-c-cccccccccceeccCCceEEcCcHHHhccCC
Confidence            7999999999999999874333677654 4554322 111111100 0 00000000        001235788998899


Q ss_pred             CEEEEccCCC
Q 016620          238 DVISLHPVLD  247 (386)
Q Consensus       238 DiVvl~lPlt  247 (386)
                      |+|+.|+|..
T Consensus        81 DvV~~aTp~~   90 (334)
T 2czc_A           81 DIIVDATPGG   90 (334)
T ss_dssp             SEEEECCSTT
T ss_pred             CEEEECCCcc
Confidence            9999999964

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.62  E-value=0.023  Score=57.48  Aligned_cols=98  Identities=16%  Similarity=0.281  Sum_probs=68.7

Q ss_pred             cccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       161 ~~l~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      ..+.|++|+|+|+-          +-...+++.| ...|++|.+|||....        +         ..  .....++
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L-~~~g~~V~~~DP~~~~--------~---------~~--~~~~~~~  408 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLC-LKAGASVMVHDPYVVN--------Y---------PG--VEISDNL  408 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHH-HHHTCEEEEECSSCCC--------B---------TT--BCEESCH
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHH-HHCCCEEEEECCCccc--------c---------cC--cceecCH
Confidence            46899999999974          3468899988 6889999999997642        0         00  1124688


Q ss_pred             HHHhhhCCEEEEccCCChhhhhcccHH-HHhcCC-CCcEEEEcCCCcccCHHHH
Q 016620          231 DEVLREADVISLHPVLDKTTYHLINKE-RLATMK-KEAILVNCSRGPVIDEVAL  282 (386)
Q Consensus       231 ~ell~~aDiVvl~lPlt~~t~~li~~~-~~~~mk-~gailIN~aRg~~vde~aL  282 (386)
                      ++.++.||.|+++++- ++-+. ++-+ ..+.|+ ++.+++|. |+ +.|.+.+
T Consensus       409 ~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~  458 (478)
T 3g79_A          409 EEVVRNADAIVVLAGH-SAYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDEF  458 (478)
T ss_dssp             HHHHTTCSEEEECSCC-HHHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred             HHHHhcCCEEEEecCC-HHHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            9999999999999974 33333 3444 445677 47899994 64 4454443

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.62  E-value=0.02  Score=56.39  Aligned_cols=70  Identities=24%  Similarity=0.317  Sum_probs=46.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhc--------CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG--------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~--------fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  235 (386)
                      .+|||||+|.||+.-++.+++.        -+++|. ++|++... .+++.+.|       +.    ...+.+++++++ 
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~-a~~~a~~~-------~~----~~~y~d~~~ll~~   94 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAM-AERHAAKL-------GA----EKAYGDWRELVND   94 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHH-HHHHHHHH-------TC----SEEESSHHHHHHC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHH-HHHHHHHc-------CC----CeEECCHHHHhcC
Confidence            4799999999999888776321        145655 56877654 23332222       21    123579999996 


Q ss_pred             -hCCEEEEccCCC
Q 016620          236 -EADVISLHPVLD  247 (386)
Q Consensus       236 -~aDiVvl~lPlt  247 (386)
                       +.|+|++|+|..
T Consensus        95 ~~vD~V~I~tp~~  107 (412)
T 4gqa_A           95 PQVDVVDITSPNH  107 (412)
T ss_dssp             TTCCEEEECSCGG
T ss_pred             CCCCEEEECCCcH
Confidence             579999999953

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.61  E-value=0.0095  Score=52.99  Aligned_cols=101  Identities=11%  Similarity=0.222  Sum_probs=60.3

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|.|.| .|.||+.+++.|++.-|++|++.+|+.....+....      ...+...  .......+++++++.+|+|+.
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~   79 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII------DHERVTVIEGSFQNPGXLEQAVTNAEVVFV   79 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH------TSTTEEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc------CCCceEEEECCCCCHHHHHHHHcCCCEEEE
Confidence            5699999 599999999998426799999999986511111000      0000000  001112355678899999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCC-C-cEEEEcCCCcc
Q 016620          243 HPVLDKTTYHLINKERLATMKK-E-AILVNCSRGPV  276 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~-g-ailIN~aRg~~  276 (386)
                      +.....  ..  ....+..|++ + ..||++|....
T Consensus        80 ~ag~~n--~~--~~~~~~~~~~~~~~~iv~iSs~~~  111 (221)
T 3r6d_A           80 GAMESG--SD--MASIVKALSRXNIRRVIGVSMAGL  111 (221)
T ss_dssp             SCCCCH--HH--HHHHHHHHHHTTCCEEEEEEETTT
T ss_pred             cCCCCC--hh--HHHHHHHHHhcCCCeEEEEeecee
Confidence            987531  11  4445555532 2 36888776443

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=95.61  E-value=0.031  Score=55.77  Aligned_cols=71  Identities=11%  Similarity=0.084  Sum_probs=48.5

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhc-CCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hC
Q 016620          166 QTVGVIGA----GRIGSAYARMMVEG-FKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EA  237 (386)
Q Consensus       166 ~~vgIvG~----G~IG~~iA~~L~~~-fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~a  237 (386)
                      .+|||||+    |.||+..++.|++. -++++ .++|++.... +.+.+.       .+...  ...+.+++++++  +.
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~-------~g~~~--~~~~~~~~~ll~~~~v   90 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETS-IATIQR-------LKLSN--ATAFPTLESFASSSTI   90 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHH-------TTCTT--CEEESSHHHHHHCSSC
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHH-HHHHHH-------cCCCc--ceeeCCHHHHhcCCCC
Confidence            57999999    99999999987433 37886 4778876542 222211       12111  123578999997  58


Q ss_pred             CEEEEccCC
Q 016620          238 DVISLHPVL  246 (386)
Q Consensus       238 DiVvl~lPl  246 (386)
                      |+|++|+|.
T Consensus        91 D~V~i~tp~   99 (438)
T 3btv_A           91 DMIVIAIQV   99 (438)
T ss_dssp             SEEEECSCH
T ss_pred             CEEEEeCCc
Confidence            999999994

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=95.60  E-value=0.056  Score=54.61  Aligned_cols=71  Identities=10%  Similarity=0.136  Sum_probs=48.5

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhc-CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hC
Q 016620          166 QTVGVIGA----GRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EA  237 (386)
Q Consensus       166 ~~vgIvG~----G~IG~~iA~~L~~~-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~a  237 (386)
                      .+|||||+    |.||+..++.|++. -++++. ++|++.... +.+.+.       .+...  ...+.+++++++  +.
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a-~~~a~~-------~g~~~--~~~~~d~~ell~~~~v  109 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSS-LQTIEQ-------LQLKH--ATGFDSLESFAQYKDI  109 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHH-HHHHHH-------TTCTT--CEEESCHHHHHHCTTC
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHH-HHHHHH-------cCCCc--ceeeCCHHHHhcCCCC
Confidence            57999999    99999999987433 378865 778876432 222221       12111  123578999996  68


Q ss_pred             CEEEEccCC
Q 016620          238 DVISLHPVL  246 (386)
Q Consensus       238 DiVvl~lPl  246 (386)
                      |+|++|+|.
T Consensus       110 D~V~I~tp~  118 (479)
T 2nvw_A          110 DMIVVSVKV  118 (479)
T ss_dssp             SEEEECSCH
T ss_pred             CEEEEcCCc
Confidence            999999994

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.58  E-value=0.021  Score=54.56  Aligned_cols=96  Identities=14%  Similarity=0.155  Sum_probs=61.2

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh----hCC
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EAD  238 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~----~aD  238 (386)
                      -.|.+|.|+|.|.||...++.+ +.+|++|++.+++.....  +       .++.+..........++.+.+.    ..|
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~-------~~~lGa~~~i~~~~~~~~~~~~~~~g~~d  234 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYA-RAMGLRVAAVDIDDAKLN--L-------ARRLGAEVAVNARDTDPAAWLQKEIGGAH  234 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHH-HHTTCEEEEEESCHHHHH--H-------HHHTTCSEEEETTTSCHHHHHHHHHSSEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCCHHHHH--H-------HHHcCCCEEEeCCCcCHHHHHHHhCCCCC
Confidence            3688999999999999999985 789999999998765421  1       1222322111111224433332    578


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|+.+... +++    -...++.++++..++.++-
T Consensus       235 ~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  264 (340)
T 3s2e_A          235 GVLVTAVS-PKA----FSQAIGMVRRGGTIALNGL  264 (340)
T ss_dssp             EEEESSCC-HHH----HHHHHHHEEEEEEEEECSC
T ss_pred             EEEEeCCC-HHH----HHHHHHHhccCCEEEEeCC
Confidence            88887753 221    1456677888888888753

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=95.56  E-value=0.03  Score=52.71  Aligned_cols=103  Identities=21%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             CeEEEEecChhHHHHHHHHHh---cCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCE
Q 016620          166 QTVGVIGAGRIGSAYARMMVE---GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~---~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (386)
                      .+|||||+|.||+..++.+.+   .-++++. ++|++...             +.   .+  .. +.+++++++  +.|+
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a-------------~~---~g--~~-~~~~~ell~~~~vD~   68 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-------------SL---DE--VR-QISLEDALRSQEIDV   68 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-------------EE---TT--EE-BCCHHHHHHCSSEEE
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH-------------HH---cC--CC-CCCHHHHhcCCCCCE
Confidence            479999999999999887633   2366765 56654211             00   01  11 368999997  6799


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~i~  292 (386)
                      |++++|..  +..   +-....++.|. +++.- ---.+-+-++|.++.++..+.
T Consensus        69 V~i~tp~~--~H~---~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~  118 (294)
T 1lc0_A           69 AYICSESS--SHE---DYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRV  118 (294)
T ss_dssp             EEECSCGG--GHH---HHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             EEEeCCcH--hHH---HHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCE
Confidence            99999952  222   22223344454 66653 112334557778777665443

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.54  E-value=0.017  Score=55.04  Aligned_cols=76  Identities=17%  Similarity=0.246  Sum_probs=44.9

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      +|+|+|.|.+|.++|..++. .|. +|..+|...........+....... .. .........+. +.+++||+|+++.+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~-~~l~el~L~Di~~~~~~g~~~dl~~~~~~-~~-~~~~i~~t~d~-~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMM-RGYDDLLLIARTPGKPQGEALDLAHAAAE-LG-VDIRISGSNSY-EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HTCSCEEEECSSTTHHHHHHHHHHHHHHH-HT-CCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEECcCHHHHHHHHHHHh-CCCCEEEEEcCChhhHHHHHHHHHHhhhh-cC-CCeEEEECCCH-HHhCCCCEEEEeCC
Confidence            58999999999999987743 244 6999998754321111111000000 01 11122222455 57899999999966


Q ss_pred             C
Q 016620          246 L  246 (386)
Q Consensus       246 l  246 (386)
                      .
T Consensus        77 ~   77 (308)
T 2d4a_B           77 I   77 (308)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=95.53  E-value=0.14  Score=50.75  Aligned_cols=114  Identities=18%  Similarity=0.259  Sum_probs=71.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCCh---------hhHHHHHHhhhhhhhhhcCC-CCccccccCC
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVTAYGQFLKANGE-QPVTWKRASS  229 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  229 (386)
                      .++.|+||.|-|+|++|+..|+.| ...|++|+ +.|.+.         ...+.++.       ...+. .... ....+
T Consensus       217 ~~l~g~~vaVqG~GnVG~~aa~~l-~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~-------~~~g~i~~~~-a~~~~  287 (424)
T 3k92_A          217 IKLQNARIIIQGFGNAGSFLAKFM-HDAGAKVIGISDANGGLYNPDGLDIPYLLDKR-------DSFGMVTNLF-TDVIT  287 (424)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHH-HHHTCEEEEEECSSCEEECTTCCCHHHHHHHC-------CSSSCCGGGC-SCCBC
T ss_pred             CCcccCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCcEECCCCCCHHHHHHHH-------HHhCCCCCCC-cEEec
Confidence            469999999999999999999997 57899986 445441         11111110       11110 0000 11224


Q ss_pred             HHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       230 l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      -++++ ..||+++=|..     .+.|+.+...+++ -.+++-.+-+++-  .+-.+.|.+..|
T Consensus       288 ~~~i~~~~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~t--~eA~~iL~~rGI  342 (424)
T 3k92_A          288 NEELLEKDCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPTT--IDATKILNERGV  342 (424)
T ss_dssp             HHHHHHSCCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCBC--HHHHHHHHHTTC
T ss_pred             CccceeccccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCCC--HHHHHHHHHCCC
Confidence            45544 57999987765     4667777777774 5588888999863  333466666554

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=95.52  E-value=0.017  Score=55.82  Aligned_cols=97  Identities=18%  Similarity=0.077  Sum_probs=61.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC-CHHHHh-hhCCEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDEVL-READVIS  241 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~ell-~~aDiVv  241 (386)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++.....  +       +++.+.......... ++.+.+ ...|+|+
T Consensus       179 ~g~~VlV~GaG~vG~~~~qla-k~~Ga~Vi~~~~~~~~~~--~-------~~~lGa~~v~~~~~~~~~~~~~~~~~D~vi  248 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKRE--D-------AMKMGADHYIATLEEGDWGEKYFDTFDLIV  248 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTHH--H-------HHHHTCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHH--H-------HHHcCCCEEEcCcCchHHHHHhhcCCCEEE
Confidence            578999999999999999985 789999999997654421  1       111222111111112 333322 4689999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .+...++  ... -...++.++++..++.++.
T Consensus       249 d~~g~~~--~~~-~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          249 VCASSLT--DID-FNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             ECCSCST--TCC-TTTGGGGEEEEEEEEECCC
T ss_pred             ECCCCCc--HHH-HHHHHHHhcCCCEEEEecC
Confidence            9987521  011 1345677888989998865

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=95.52  E-value=0.023  Score=51.16  Aligned_cols=102  Identities=11%  Similarity=0.110  Sum_probs=61.3

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhhCC
Q 016620          163 LKGQTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREAD  238 (386)
Q Consensus       163 l~g~~vgIvG-~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aD  238 (386)
                      ...++|.|.| .|.||+.+++.| ..-| .+|++++|+......         +...+...  .......+++++++.+|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L-~~~G~~~V~~~~R~~~~~~~---------~~~~~~~~~~~Dl~d~~~~~~~~~~~D   90 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQL-ADKQTIKQTLFARQPAKIHK---------PYPTNSQIIMGDVLNHAALKQAMQGQD   90 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHH-TTCTTEEEEEEESSGGGSCS---------SCCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHH-HhCCCceEEEEEcChhhhcc---------cccCCcEEEEecCCCHHHHHHHhcCCC
Confidence            3457899999 599999999998 4778 899999987653110         00000000  00111234667889999


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCC-C-cEEEEcCCCcc
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKK-E-AILVNCSRGPV  276 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~-g-ailIN~aRg~~  276 (386)
                      +|+.+......  .......+..|++ + ..||++|....
T Consensus        91 ~vv~~a~~~~~--~~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A           91 IVYANLTGEDL--DIQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             EEEEECCSTTH--HHHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             EEEEcCCCCch--hHHHHHHHHHHHHcCCCEEEEEeccee
Confidence            99988764332  1122344555532 2 47888887443

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=95.51  E-value=0.072  Score=46.07  Aligned_cols=73  Identities=12%  Similarity=0.076  Sum_probs=47.4

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEEE
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiVv  241 (386)
                      +++|.|.|. |.||+.+++.|+ .-|.+|++.+|+......         ....+....  ......++.++++.+|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~-~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAV-QAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHH-HCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            478999998 999999999984 678999999987643100         000000000  0011234567788999999


Q ss_pred             EccCCC
Q 016620          242 LHPVLD  247 (386)
Q Consensus       242 l~lPlt  247 (386)
                      .+....
T Consensus        73 ~~a~~~   78 (206)
T 1hdo_A           73 VLLGTR   78 (206)
T ss_dssp             ECCCCT
T ss_pred             ECccCC
Confidence            887653

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=95.51  E-value=0.022  Score=53.72  Aligned_cols=105  Identities=18%  Similarity=0.146  Sum_probs=65.4

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEE
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiV  240 (386)
                      ..+|.|+|+ |++|+.+++.+ +..|.++ ...+|....                 ..-.+...+.+++|+..  ..|++
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l-~~~g~~~v~~VnP~~~g-----------------~~i~G~~vy~sl~el~~~~~~Dv~   68 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQM-LTYGTKIVAGVTPGKGG-----------------MEVLGVPVYDTVKEAVAHHEVDAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHSCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHH-HHcCCeEEEEECCCCCC-----------------ceECCEEeeCCHHHHhhcCCCCEE
Confidence            467999999 99999999987 4568874 366664310                 00012233578999988  89999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC-cccCHHHHHHHHHcCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG-PVIDEVALVEHLKQNPM  291 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg-~~vde~aL~~aL~~g~i  291 (386)
                      ++++|. +.+...+ ++..+. +-. .+|..+.| ..-+++.|.++.++..+
T Consensus        69 Ii~vp~-~~~~~~~-~ea~~~-Gi~-~vVi~t~G~~~~~~~~l~~~a~~~gi  116 (288)
T 1oi7_A           69 IIFVPA-PAAADAA-LEAAHA-GIP-LIVLITEGIPTLDMVRAVEEIKALGS  116 (288)
T ss_dssp             EECCCH-HHHHHHH-HHHHHT-TCS-EEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             EEecCH-HHHHHHH-HHHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            999994 2333333 333331 222 24555555 22345688888876544

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=95.48  E-value=0.029  Score=53.49  Aligned_cols=103  Identities=22%  Similarity=0.247  Sum_probs=57.8

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|+|.|.+|.+++..|+. +..-++..+|...........+.-+. . ... .+.... ..+ .+.++.||+|+++.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~-~-~~~-~~~~v~-~~~-~~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHA-T-PFA-HPVWVW-AGS-YGDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTT-G-GGS-CCCEEE-ECC-GGGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHh-H-hhc-CCeEEE-ECC-HHHhCCCCEEEECC
Confidence            479999999999999987753 23358999998754321111111000 0 001 112222 233 56789999999997


Q ss_pred             CCChh---h--------hhccc--HHHHhcCCCCcEEEEcCC
Q 016620          245 VLDKT---T--------YHLIN--KERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 Plt~~---t--------~~li~--~~~~~~mk~gailIN~aR  273 (386)
                      +....   +        ..++.  .+.+....|.+++++++-
T Consensus        76 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           76 GVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence            64322   1        11110  012222368899999844

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.46  E-value=0.017  Score=55.83  Aligned_cols=32  Identities=25%  Similarity=0.410  Sum_probs=25.2

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      +|||+|+|.||+.+.|.|...-.++|.+.+..
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain~~   34 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDL   34 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEeCC
Confidence            79999999999999998743336788766543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=95.46  E-value=0.06  Score=52.13  Aligned_cols=95  Identities=18%  Similarity=0.120  Sum_probs=61.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhh-----
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (386)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.....  +       .++.+........  ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~~--~-------~~~lGa~~vi~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDKFA--K-------AKEVGATECVNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--H-------HHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--H-------HHHhCCceEecccccchhHHHHHHHHhCC
Confidence            688999999999999999985 78999 8999987765421  1       1222221111111  123444333     


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~g-ailIN~aR  273 (386)
                      ..|+|+-+... +++    -...++.++++ ..++.++-
T Consensus       261 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          261 GVDFSFEVIGR-LDT----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHHBCTTTCEEEECSC
T ss_pred             CCcEEEECCCC-HHH----HHHHHHHhhcCCcEEEEecc
Confidence            47999988864 222    14567778888 88888764

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.44  E-value=0.029  Score=52.01  Aligned_cols=108  Identities=17%  Similarity=0.206  Sum_probs=63.3

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc----cccccCCHHHHhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV----TWKRASSMDEVLR  235 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~ell~  235 (386)
                      ..+.||++.|.|. |.||+++|+.|+ .-|++|+..+++.....+...+.    +...+....    ......+++++++
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~Dv~d~~~v~~~~~  101 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLA-LEGAAVALTYVNAAERAQAVVSE----IEQAGGRAVAIRADNRDAEAIEQAIR  101 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHH----HHHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHH----HHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            3589999999986 789999999985 68999998866554333322111    111111100    0011122334444


Q ss_pred             -------hCCEEEEccCCChh------h----h-----h-----cccHHHHhcCCCCcEEEEcCC
Q 016620          236 -------EADVISLHPVLDKT------T----Y-----H-----LINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 -------~aDiVvl~lPlt~~------t----~-----~-----li~~~~~~~mk~gailIN~aR  273 (386)
                             ..|+++.+.-....      +    .     +     .+.+..+..|+++..+||++.
T Consensus       102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence                   67999887643210      0    0     1     123445677888888888876

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.42  E-value=0.031  Score=53.89  Aligned_cols=105  Identities=11%  Similarity=0.179  Sum_probs=61.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcC-CC-CccccccCCHHHHhhhC
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANG-EQ-PVTWKRASSMDEVLREA  237 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~l~ell~~a  237 (386)
                      ....++|+|+|.|.||..+|..|+ ..|.  ++..+|.........-.+.     .... .. ........+.+ .+++|
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~L~Di~~~~~~g~a~DL-----~~~~~~~~~~~i~~~~d~~-~~~~a   88 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISIL-MKDLADELALVDVIEDKLKGEMMDL-----QHGSLFLKTPKIVSSKDYS-VTANS   88 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSCHHHHHHHHHHH-----HHTGGGCSCCEEEECSSGG-GGTTE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEeCChHHHHHHHHhh-----hhhhhccCCCeEEEcCCHH-HhCCC
Confidence            456789999999999999998764 3344  8999998754322111111     1110 00 11112234555 58999


Q ss_pred             CEEEEccCCCh---hhh-hcccH---------HHHhcCCCCcEEEEcCC
Q 016620          238 DVISLHPVLDK---TTY-HLINK---------ERLATMKKEAILVNCSR  273 (386)
Q Consensus       238 DiVvl~lPlt~---~t~-~li~~---------~~~~~mk~gailIN~aR  273 (386)
                      |+|+++.....   .|+ .++..         +.+....|.+++++++-
T Consensus        89 DiVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           89 KLVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             EEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CEEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99999864321   122 22211         22333478899999984

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.42  E-value=0.027  Score=54.89  Aligned_cols=134  Identities=12%  Similarity=0.144  Sum_probs=84.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      -.++.|+|.|.+|+++|+.+ +.+|++|.++|++.....                           .+-+..+|-++...
T Consensus       199 ~~~L~I~GaGhva~aLa~la-~~lgf~V~v~D~R~~~~~---------------------------~~~fp~a~~v~~~~  250 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFA-SNVGFYTVVTDWRPNQCE---------------------------KHFFPDADEIIVDF  250 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHH-HHHTEEEEEEESCGGGGC---------------------------GGGCTTCSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCeEEEECCCccccc---------------------------cccCCCceEEecCC
Confidence            35799999999999999985 789999999998764310                           01133456555444


Q ss_pred             CCChhhhhcccHHHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe--------eccCCCCCCCCCCCCCCC
Q 016620          245 VLDKTTYHLINKERLAT--MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL--------DVFEDEPYMKPGLSEMKN  314 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~--mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaal--------DV~~~EP~~~~~L~~~~n  314 (386)
                      |          .+.+..  +.+++.+|=+.++.-.|...|..+|++. ....++        -.....-       ...+
T Consensus       251 p----------~~~~~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~~-~~YiG~iGSr~R~~rl~~~g~-------~~~r  312 (362)
T 3on5_A          251 P----------ADFLRKFLIRPDDFVLIMTHHFQKDQEILHFLLEKE-LRYIGILGSKERTRRLLQNRK-------PPDH  312 (362)
T ss_dssp             H----------HHHHHHSCCCTTCEEEECCSCHHHHHHHHHHHSSSC-CSEEEESSCHHHHHHHHTSCC-------CCTT
T ss_pred             H----------HHHHhhcCCCCCeEEEEEeCCchhhHHHHHHHhcCC-CCEEEEeCCHHHHHHHHhcCC-------cHhh
Confidence            4          222333  5677888888888888888888888763 344333        1111110       0112


Q ss_pred             eEEcC---CCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 016620          315 AIVVP---HIASASKWTREGMATLAALNVLGKIKGYP  348 (386)
Q Consensus       315 vilTP---Hia~~t~~~~~~~~~~~~~ni~~~~~g~~  348 (386)
                       +-+|   -+++.|++   .++--++..|....+|.+
T Consensus       313 -i~~PIGL~Iga~tP~---EIAvSI~AEiia~~~~~~  345 (362)
T 3on5_A          313 -LYSPVGLSIDAQGPE---EIAISIVAQLIQLIRSRK  345 (362)
T ss_dssp             -EESSCSCCSCCCSHH---HHHHHHHHHHHHHHHHSC
T ss_pred             -eECCCCCCCCCCCHH---HHHHHHHHHHHHHHhCCC
Confidence             4444   36777774   455556667777777763

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=95.40  E-value=0.036  Score=53.28  Aligned_cols=117  Identities=16%  Similarity=0.233  Sum_probs=68.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhc--------CCcEEEE-EcCChhhH----HHHHHhhhhhhhhhcCCCCccccccCCHHH
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG--------FKMNLIY-YDLYQATR----LEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~--------fg~~V~~-~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e  232 (386)
                      .+|||+|+|.||+.+++.+.+.        .+.+|.+ +|++....    ...+...    ......    .....++++
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~----~~~~~~----~~~~~d~~~   74 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRM----KRETGM----LRDDAKAIE   74 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHH----HHHHSS----CSBCCCHHH
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhh----hccCcc----ccCCCCHHH
Confidence            3799999999999999987543        6777664 45543211    0111110    000000    000238899


Q ss_pred             Hhhh--CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 016620          233 VLRE--ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (386)
Q Consensus       233 ll~~--aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~v-de~aL~~aL~~g~i  291 (386)
                      ++.+  .|+|+.|+|....+.. .-+-....++.|.-++...-+.+. +-+.|.++.++...
T Consensus        75 ll~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~  135 (327)
T 3do5_A           75 VVRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV  135 (327)
T ss_dssp             HHHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred             HhcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence            9864  8999999996432212 123345567788777776555543 56778887776654

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=95.40  E-value=0.011  Score=53.33  Aligned_cols=67  Identities=15%  Similarity=0.212  Sum_probs=44.4

Q ss_pred             CeEEEEecChhHHHHHHHH-HhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMM-VEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L-~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiVvl  242 (386)
                      .+|+|+|+|.+|+.+++.+ ... |+++. ++|.++...-           ..  ..+..+....+++++++ +.|+|++
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g-----------~~--i~gv~V~~~~dl~ell~~~ID~ViI  146 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVG-----------RP--VRGGVIEHVDLLPQRVPGRIEIALL  146 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTT-----------CE--ETTEEEEEGGGHHHHSTTTCCEEEE
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHh-----------hh--hcCCeeecHHhHHHHHHcCCCEEEE
Confidence            4799999999999999852 134 78866 4566543310           00  11122223567889886 5899999


Q ss_pred             ccCC
Q 016620          243 HPVL  246 (386)
Q Consensus       243 ~lPl  246 (386)
                      |+|.
T Consensus       147 A~Ps  150 (211)
T 2dt5_A          147 TVPR  150 (211)
T ss_dssp             CSCH
T ss_pred             eCCc
Confidence            9994

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=95.39  E-value=0.012  Score=57.36  Aligned_cols=38  Identities=26%  Similarity=0.503  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+.+++|+|+|.|.+|+.+++.+ +.+|++|+++|+++.
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa-~~lG~~viv~d~~~~   46 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSA-QKMGYKVVVLDPSED   46 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCC
Confidence            46899999999999999999996 789999999998754

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.38  E-value=0.13  Score=50.88  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=47.7

Q ss_pred             CeEEEEecCh---hHHHHHHHHHhcCCcEEE--EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh----
Q 016620          166 QTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----  236 (386)
Q Consensus       166 ~~vgIvG~G~---IG~~iA~~L~~~fg~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~----  236 (386)
                      .+|||||+|.   ||+..+..+...-++++.  ++|++.... +++.+.|       +...  ...+.+++++++.    
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~~~  107 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKA-EASGREL-------GLDP--SRVYSDFKEMAIREAKL  107 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHH-HHHHHHH-------TCCG--GGBCSCHHHHHHHHHHC
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHH-HHHHHHc-------CCCc--ccccCCHHHHHhccccc
Confidence            4799999999   999988876433346765  568876542 2222221       2211  1245799999987    


Q ss_pred             ---CCEEEEccCCC
Q 016620          237 ---ADVISLHPVLD  247 (386)
Q Consensus       237 ---aDiVvl~lPlt  247 (386)
                         .|+|++|+|..
T Consensus       108 ~~~vD~V~I~tp~~  121 (417)
T 3v5n_A          108 KNGIEAVAIVTPNH  121 (417)
T ss_dssp             TTCCSEEEECSCTT
T ss_pred             CCCCcEEEECCCcH
Confidence               99999999964

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.37  E-value=0.073  Score=51.57  Aligned_cols=95  Identities=17%  Similarity=0.056  Sum_probs=61.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc--CCHHHHhh-----
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLR-----  235 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ell~-----  235 (386)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.....  +       .++.+.........  .++.+.+.     
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~~~v~~~~~~  264 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKFP--K-------AKALGATDCLNPRELDKPVQDVITELTAG  264 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--H-------HHHTTCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--H-------HHHhCCcEEEccccccchHHHHHHHHhCC
Confidence            688999999999999999985 78999 8999988765421  1       12223221111111  23444332     


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~g-ailIN~aR  273 (386)
                      ..|+|+-+... +++    -...++.++++ ..++.++-
T Consensus       265 g~Dvvid~~G~-~~~----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          265 GVDYSLDCAGT-AQT----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CBSEEEESSCC-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CccEEEECCCC-HHH----HHHHHHHhhcCCCEEEEECC
Confidence            47999988863 221    14567888888 88888764

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=95.36  E-value=0.091  Score=52.50  Aligned_cols=119  Identities=13%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh--------h--hHHHHHHhhhh-------hhhhhcCCCCcc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--------A--TRLEKFVTAYG-------QFLKANGEQPVT  223 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~--------~--~~~~~~~~~~~-------~~~~~~~~~~~~  223 (386)
                      .++.|+||.|-|+|++|+..|+.| ...|++|++.+.+.        -  ..+....+.-.       ...++.+.   .
T Consensus       231 ~~l~Gk~vaVQG~GnVG~~aa~~L-~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~---~  306 (450)
T 4fcc_A          231 MGFEGMRVSVSGSGNVAQYAIEKA-MEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGL---V  306 (450)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTC---E
T ss_pred             CCcCCCEEEEeCCChHHHHHHHHH-HhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCc---E
Confidence            469999999999999999999998 58999998754221        0  01111100000       00000000   0


Q ss_pred             ccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCC--cEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE--AILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       224 ~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~g--ailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      .....++  +-..|||.+=|.     +.+.|+.+...+++..  .++++.+-+.+-.+.  .+.|.+..|.
T Consensus       307 ~~~~~~i--~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~eA--~~iL~~rGIl  368 (450)
T 4fcc_A          307 YLEGQQP--WSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIEA--TELFQQAGVL  368 (450)
T ss_dssp             EEETCCG--GGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH--HHHHHHTTCE
T ss_pred             EecCccc--ccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHHH--HHHHHHCCCE
Confidence            0011111  124689988775     3567888888877643  578888888864433  3556665443

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.35  E-value=0.0094  Score=55.97  Aligned_cols=39  Identities=18%  Similarity=0.172  Sum_probs=35.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ..+.|++|.|||.|.+|...++.| ...|++|.++++...
T Consensus         9 ~~l~~k~VLVVGgG~va~rka~~L-l~~Ga~VtViap~~~   47 (274)
T 1kyq_A            9 HQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLH   47 (274)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEEC
T ss_pred             EEcCCCEEEEECCcHHHHHHHHHH-HhCCCEEEEEcCCCC
Confidence            568999999999999999999998 689999999998654

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.34  E-value=0.045  Score=53.19  Aligned_cols=100  Identities=18%  Similarity=0.262  Sum_probs=54.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcC-ChhhHHHHHHhhhhhhhhhcCCC----------------CccccccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQ----------------PVTWKRAS  228 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~  228 (386)
                      .+|||+|+|.||+.+.|.|...-.++|.+.+. ........+.-.|++.   .+..                ........
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~---hg~~~~~v~~~~~~l~v~g~~i~v~~~~   94 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSV---HGNFNGTVEVSGKDLCINGKVVKVFQAK   94 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTT---TCSCSSCEEECC-CEEETTEEEEEECCS
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhccccc---CCCCCCcEEEeCCEEEECCeEEEEEecC
Confidence            38999999999999999874323678776653 3322111111111111   0111                00111112


Q ss_pred             CHHHHh---hhCCEEEEccCCChhhhhcccHHHHhcCCCCc--EEEEcCC
Q 016620          229 SMDEVL---READVISLHPVLDKTTYHLINKERLATMKKEA--ILVNCSR  273 (386)
Q Consensus       229 ~l~ell---~~aDiVvl~lPlt~~t~~li~~~~~~~mk~ga--ilIN~aR  273 (386)
                      +.+++-   ..+|+|+.|+|.... .    +..-..++.|+  ++|+.+-
T Consensus        95 dp~~i~w~~~~vDvV~eatg~~~s-~----e~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           95 DPAEIPWGASGAQIVCESTGVFTT-E----EKASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             CGGGCCHHHHTCCEEEECSSSCCS-H----HHHGGGGTTTCSEEEESSCC
T ss_pred             ChHHCCcccCCCCEEEECCCchhh-H----HHHHHHHHcCCcEEEEeCCC
Confidence            444432   579999999995332 1    22223456788  8888754

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.33  E-value=0.067  Score=51.35  Aligned_cols=96  Identities=16%  Similarity=0.092  Sum_probs=61.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHH---h----
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEV---L----  234 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~el---l----  234 (386)
                      .|++|.|+|.|.+|...++.+ +.+|++|++.+++.....  +       +++.+........  ....+++   .    
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~-------~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRLE--V-------AKNCGADVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHH--H-------HHHTTCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEcCCHHHHH--H-------HHHhCCCEEEcCcccccHHHHHHHHhcccc
Confidence            578999999999999999985 789999999988765421  1       1122221111001  1112222   2    


Q ss_pred             -hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       235 -~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                       ...|+|+-+.... .+    -...++.++++..++.++.+
T Consensus       238 g~g~D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          238 GDLPNVTIDCSGNE-KC----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SSCCSEEEECSCCH-HH----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCCCEEEECCCCH-HH----HHHHHHHHhcCCEEEEEecC
Confidence             2489999988642 11    14567788999999988753

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=95.33  E-value=0.072  Score=46.97  Aligned_cols=97  Identities=11%  Similarity=0.027  Sum_probs=57.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|.|.|. |.||+.+++.|+ .-|.+|++.+|+.......         ...+....  .... .+. +.+..+|+|+.
T Consensus         1 MkilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~~D~~d-~~~-~~~~~~d~vi~   68 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEAR-RRGHEVLAVVRDPQKAADR---------LGATVATLVKEPLV-LTE-ADLDSVDAVVD   68 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHH---------TCTTSEEEECCGGG-CCH-HHHTTCSEEEE
T ss_pred             CEEEEEcCCCHHHHHHHHHHH-HCCCEEEEEEecccccccc---------cCCCceEEeccccc-ccH-hhcccCCEEEE
Confidence            46899997 999999999984 6799999999986542210         00010000  0011 112 67889999998


Q ss_pred             ccCCC--h---hhhhcccHHHHhcCC-CCcEEEEcCCC
Q 016620          243 HPVLD--K---TTYHLINKERLATMK-KEAILVNCSRG  274 (386)
Q Consensus       243 ~lPlt--~---~t~~li~~~~~~~mk-~gailIN~aRg  274 (386)
                      +....  +   ...-......+..|+ .|..+|++|..
T Consensus        69 ~ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           69 ALSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             CCCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             CCccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            88653  1   111112234556664 34677777653

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.31  E-value=0.014  Score=58.52  Aligned_cols=120  Identities=19%  Similarity=0.130  Sum_probs=72.1

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh-CCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-aDiV  240 (386)
                      ++.|++|.|||+|..|.++|+.| +..|.+|.++|.......+ ..    +.++..+.   .+..-...++++.. +|+|
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l-~~~G~~V~~~D~~~~~~~~-~~----~~L~~~gi---~~~~g~~~~~~~~~~~d~v   76 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLL-AKLGAIVTVNDGKPFDENP-TA----QSLLEEGI---KVVCGSHPLELLDEDFCYM   76 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHH-HHTTCEEEEEESSCGGGCH-HH----HHHHHTTC---EEEESCCCGGGGGSCEEEE
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEeCCcccCCh-HH----HHHHhCCC---EEEECCChHHhhcCCCCEE
Confidence            47899999999999999999987 6899999999986421100 00    11222222   12111223345666 8999


Q ss_pred             EEccCCChhhh----------hcccH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620          241 SLHPVLDKTTY----------HLINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       241 vl~lPlt~~t~----------~li~~-~~~~~-mk~gailIN~aRg~~vde~aL~~aL~~g~  290 (386)
                      ++..-..+++.          .++.+ +.+.+ ++...+-|--+.|+.--..-|...|+...
T Consensus        77 v~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           77 IKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             EECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             EECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            88743322211          24444 33333 34444556667788766666677777544

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=95.31  E-value=0.075  Score=50.70  Aligned_cols=109  Identities=23%  Similarity=0.257  Sum_probs=64.6

Q ss_pred             CeEEEEe-cChhHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc--CCHHHHhhhCCEE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~--~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ell~~aDiV  240 (386)
                      ++|+|+| .|.+|+++|..|+.  .+.-++..+|..... .....+     +... ........+  .+..+.+++||+|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~-~G~a~D-----l~~~-~~~~~v~~~~~~~~~~~~~~aDiv   73 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT-PGVAVD-----LSHI-PTAVKIKGFSGEDATPALEGADVV   73 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTH-HHHHHH-----HHTS-CSSEEEEEECSSCCHHHHTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCc-hhHHHH-----hhCC-CCCceEEEecCCCcHHHhCCCCEE
Confidence            4799999 89999999998754  366789999987521 111111     1111 111122111  2567889999999


Q ss_pred             EEccCCCh---hhh-hcc--cH-------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016620          241 SLHPVLDK---TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALV  283 (386)
Q Consensus       241 vl~lPlt~---~t~-~li--~~-------~~~~~mk~gailIN~aRg~~vde~aL~  283 (386)
                      +++.+...   .|+ .++  |.       +.+....|.+++++++  ..+|.-..+
T Consensus        74 ii~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           74 LISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             EECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            99875321   122 122  11       1222335788999995  566665554

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=95.31  E-value=0.026  Score=53.48  Aligned_cols=94  Identities=14%  Similarity=0.105  Sum_probs=64.0

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHhhhCCEE
Q 016620          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVI  240 (386)
Q Consensus       163 l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell~~aDiV  240 (386)
                      -.|.+|.|+| .|.+|...++.+ +.+|++|++.++..+   .++.       ++.+..........+ +.+.+...|+|
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a-~~~Ga~vi~~~~~~~---~~~~-------~~lGa~~~i~~~~~~~~~~~~~g~D~v  219 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLA-KQKGTTVITTASKRN---HAFL-------KALGAEQCINYHEEDFLLAISTPVDAV  219 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEECHHH---HHHH-------HHHTCSEEEETTTSCHHHHCCSCEEEE
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHH-HHcCCEEEEEeccch---HHHH-------HHcCCCEEEeCCCcchhhhhccCCCEE
Confidence            3678999997 999999999985 789999998875332   1211       222332211112234 66666789999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +-++..    .. . ...++.++++..++.++.
T Consensus       220 ~d~~g~----~~-~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          220 IDLVGG----DV-G-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             EESSCH----HH-H-HHHGGGEEEEEEEEECCS
T ss_pred             EECCCc----HH-H-HHHHHhccCCCEEEEeCC
Confidence            998863    11 2 567888999999998864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.30  E-value=0.064  Score=51.87  Aligned_cols=95  Identities=18%  Similarity=0.091  Sum_probs=61.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhh-----
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~-----  235 (386)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++.....  +       .++.+........  ..++.+.+.     
T Consensus       190 ~g~~VlV~GaG~vG~~avqla-~~~Ga~~Vi~~~~~~~~~~--~-------~~~lGa~~vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDKFA--R-------AKEFGATECINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGHH--H-------HHHHTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--H-------HHHcCCceEeccccccccHHHHHHHHhCC
Confidence            688999999999999999985 78999 8999987765421  1       1112221111111  023444333     


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~g-ailIN~aR  273 (386)
                      ..|+|+-+.... .+    -...++.++++ ..++.++-
T Consensus       260 g~D~vid~~g~~-~~----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          260 GVDYSFECIGNV-KV----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CBSEEEECSCCH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCcH-HH----HHHHHHhhccCCcEEEEEec
Confidence            479999888642 21    25567888988 88888764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=95.29  E-value=0.033  Score=52.23  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=34.1

Q ss_pred             cccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       161 ~~l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ..+.||++.|.|.+   .||+++|+.|+ ..|++|+..+++..
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la-~~G~~V~~~~r~~~   67 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVC-AQGAEVALTYLSET   67 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHH-HCCCEEEEEeCChH
Confidence            46899999999986   89999999985 78999999998753

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.29  E-value=0.5  Score=44.47  Aligned_cols=119  Identities=12%  Similarity=0.017  Sum_probs=73.4

Q ss_pred             cEEEEccccccccChhHHhhCCcEEec-CCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCC
Q 016620           88 KAFSNMAVGYNNVDVNAANKYGIAVGN-TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ  166 (386)
Q Consensus        88 k~i~~~~~G~d~id~~~~~~~gI~v~n-~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~  166 (386)
                      ..|+.+.-+-..+....++-.+|+|.| .-|....++  .+++=++.+.+++                     | .+.|.
T Consensus        92 D~iviR~~~~~~~~~~la~~~~vPVINAG~g~~~HPt--QaLaDl~Ti~e~~---------------------g-~l~gl  147 (291)
T 3d6n_B           92 DYVVFRVPFVFFPYKEIVKSLNLRLVNAGDGTHQHPS--QGLIDFFTIKEHF---------------------G-EVKDL  147 (291)
T ss_dssp             SEEEEEESSCCCSCHHHHHTCSSEEEEEEETTTBCHH--HHHHHHHHHHHHH---------------------S-CCTTC
T ss_pred             CEEEEEcCChHHHHHHHHHhCCCCEEeCccCCCcCcH--HHHHHHHHHHHHh---------------------C-CcCCc
Confidence            455555444333432134556799999 334333221  1333333333311                     1 38899


Q ss_pred             eEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          167 TVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       167 ~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      +|+++|=   +++..+.+..+ ..||++|.+..|..-.  +.      + ...     .+.....+++|.++++|+|.. 
T Consensus       148 ~va~vGDl~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~--p~------~-~~~-----~g~~~~~d~~eav~~aDvvy~-  211 (291)
T 3d6n_B          148 RVLYVGDIKHSRVFRSGAPLL-NMFGAKIGVCGPKTLI--PR------D-VEV-----FKVDVFDDVDKGIDWADVVIW-  211 (291)
T ss_dssp             EEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGS--CT------T-GGG-----GCEEEESSHHHHHHHCSEEEE-
T ss_pred             EEEEECCCCCCchHHHHHHHH-HHCCCEEEEECCchhC--Cc------h-HHH-----CCCEEEcCHHHHhCCCCEEEE-
Confidence            9999996   89999999987 5799999999874321  00      0 111     113335799999999999998 


Q ss_pred             cCC
Q 016620          244 PVL  246 (386)
Q Consensus       244 lPl  246 (386)
                      +-.
T Consensus       212 ~~~  214 (291)
T 3d6n_B          212 LRL  214 (291)
T ss_dssp             CCC
T ss_pred             eCc
Confidence            654

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.28  E-value=0.044  Score=52.80  Aligned_cols=96  Identities=19%  Similarity=0.159  Sum_probs=61.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---cCCHH-HHh----
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMD-EVL----  234 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~-ell----  234 (386)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++.....  +       .++.+........   ..++. ++.    
T Consensus       171 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~~~~i~~~~~  240 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRLS--K-------AKEIGADLVLQISKESPQEIARKVEGQLG  240 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHH--H-------HHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--H-------HHHhCCCEEEcCcccccchHHHHHHHHhC
Confidence            578999999999999999985 78999 9999998765321  1       1222321110000   01111 221    


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      ...|+|+-+.... .+    -...++.++++..++.++-+
T Consensus       241 ~g~D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          241 CKPEVTIECTGAE-AS----IQAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             SCCSEEEECSCCH-HH----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCCEEEECCCCh-HH----HHHHHHHhcCCCEEEEEecC
Confidence            2489999998742 11    14567889999999988753

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.27  E-value=0.028  Score=54.57  Aligned_cols=95  Identities=19%  Similarity=0.173  Sum_probs=61.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh------
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE------  236 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~------  236 (386)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++.....  +       .++.+..........++.+.+.+      
T Consensus       182 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~i~~~~~~~~  251 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLA-RLAGATTVILSTRQATKRR--L-------AEEVGATATVDPSAGDVVEAIAGPVGLVP  251 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCHHHHH--H-------HHHHTCSEEECTTSSCHHHHHHSTTSSST
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--H-------HHHcCCCEEECCCCcCHHHHHHhhhhccC
Confidence            578999999999999999985 79999 8999988765421  1       11223222111122345444443      


Q ss_pred             --CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 --ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 --aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                        .|+|+-+... +++    -...++.++++..++.++-
T Consensus       252 gg~Dvvid~~G~-~~~----~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          252 GGVDVVIECAGV-AET----VKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TCEEEEEECSCC-HHH----HHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEECCCC-HHH----HHHHHHHhccCCEEEEEec
Confidence              7888888753 222    1456677888888888764

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=95.25  E-value=0.066  Score=51.81  Aligned_cols=95  Identities=15%  Similarity=0.018  Sum_probs=61.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc--CCHHHHhh-----
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLR-----  235 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~ell~-----  235 (386)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.....  +       .++.+.........  .++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDKFP--K-------AIELGATECLNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGGHH--H-------HHHTTCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHHH--H-------HHHcCCcEEEecccccchHHHHHHHHhCC
Confidence            588999999999999999975 78999 8999987765421  1       12223221111111  23444332     


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~g-ailIN~aR  273 (386)
                      ..|+|+-+... +++    -...++.++++ ..++.++-
T Consensus       261 g~Dvvid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          261 GVDYAVECAGR-IET----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHHhcCCCEEEEEcc
Confidence            47999988863 222    14567888988 88888764

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=95.25  E-value=0.055  Score=50.67  Aligned_cols=39  Identities=23%  Similarity=0.123  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ..+.||++.|.|. |.||+++|+.|+ .-|++|+..+++..
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~~~   84 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYA-REGADVAINYLPAE   84 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECCGGG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            4589999999986 889999999985 78999999988643

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=95.24  E-value=0.087  Score=50.19  Aligned_cols=105  Identities=22%  Similarity=0.317  Sum_probs=61.5

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhhCCE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADV  239 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aDi  239 (386)
                      ++|+|+|. |.+|..++..|+ ..|  -+|..+|........  .+     +... ..+.....   ..++++.++.||+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~-~~~~~~ev~L~Di~~~~~~a--~d-----L~~~-~~~~~l~~~~~t~d~~~a~~~aDv   71 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPGVA--AD-----LSHI-ETRATVKGYLGPEQLPDCLKGCDV   71 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHHHH--HH-----HTTS-SSSCEEEEEESGGGHHHHHTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCcEEEEEeCCccHHHH--HH-----Hhcc-CcCceEEEecCCCCHHHHhCCCCE
Confidence            47999998 999999999875 445  689999987621111  11     1111 11111222   1468888999999


Q ss_pred             EEEccCCChh---hh-hcc--c----HH---HHhcCCCCcEEEEcCCCcccCHHH
Q 016620          240 ISLHPVLDKT---TY-HLI--N----KE---RLATMKKEAILVNCSRGPVIDEVA  281 (386)
Q Consensus       240 Vvl~lPlt~~---t~-~li--~----~~---~~~~mk~gailIN~aRg~~vde~a  281 (386)
                      |+++......   ++ .++  |    .+   .+....+.+++++++  ..+|.-.
T Consensus        72 Vvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~~~  124 (314)
T 1mld_A           72 VVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNSTI  124 (314)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred             EEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcchhH
Confidence            9999753221   11 110  1    11   222234788999974  4666544

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.23  E-value=0.028  Score=53.87  Aligned_cols=94  Identities=16%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----hC
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (386)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++.....  +       .++. ..........++.+.+.     ..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~~--~-------~~~l-a~~v~~~~~~~~~~~~~~~~~~g~  232 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVV-RASGAGPILVSDPNPYRLA--F-------ARPY-ADRLVNPLEEDLLEVVRRVTGSGV  232 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHHG--G-------GTTT-CSEEECTTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--H-------HHHh-HHhccCcCccCHHHHHHHhcCCCC
Confidence            789999999999999999985 78999 8999998764321  0       1111 11000011124444333     47


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+|+-+....+ +    -...++.++++..++.++.
T Consensus       233 D~vid~~g~~~-~----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          233 EVLLEFSGNEA-A----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEEEECSCCHH-H----HHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCCHH-H----HHHHHHHHhcCCEEEEEec
Confidence            88888886311 1    1456677888888888764

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.22  E-value=0.15  Score=51.43  Aligned_cols=109  Identities=12%  Similarity=0.090  Sum_probs=68.8

Q ss_pred             ccccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhh---hhhcCCCCccccc
Q 016620          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGEQPVTWKR  226 (386)
Q Consensus       160 g~~l~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~  226 (386)
                      +..+.|++|+|+|+-          +-...+++.| ...|++|.+|||........   .|+..   +.... .  ....
T Consensus       323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~~~~~~~~~~~-~--~~~~  395 (478)
T 2y0c_A          323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAEL-LSRGARIAAYDPVAQEEARR---VIALDLADHPSWL-E--RLSF  395 (478)
T ss_dssp             CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECTTTHHHHHH---HHHHHTTTCHHHH-T--TEEE
T ss_pred             cccCCCCEEEEEecccCCCCCccccChHHHHHHHH-HHCCCEEEEECCCccHHHHH---hhccccccccccc-c--ceee
Confidence            346899999999984          3567889988 68999999999986442211   11100   00000 0  0123


Q ss_pred             cCCHHHHhhhCCEEEEccCCChhhhhcccHHHH-hcCCCCcEEEEcCCCcccCHH
Q 016620          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEV  280 (386)
Q Consensus       227 ~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~-~~mk~gailIN~aRg~~vde~  280 (386)
                      ..++++.++.||+|++++.-. +-+. ++-+.+ +.|+ +.+++|+ |+ +.|.+
T Consensus       396 ~~~~~~~~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          396 VDDEAQAARDADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             CSSHHHHTTTCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             cCCHHHHHhCCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            467889999999999999863 3333 344444 4565 4788887 43 44544

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.22  E-value=0.05  Score=51.35  Aligned_cols=98  Identities=12%  Similarity=0.078  Sum_probs=57.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|+|+| +|.||+.+++.+.+.-++++. ++|+........  +    ...-.+..+.++....++++++..+|+|+-+
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~--d----~gel~G~~~~gv~v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDK--D----ASILIGSDFLGVRITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTS--B----GGGGTTCSCCSCBCBSCHHHHTTSCSEEEEC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--c----hHHhhccCcCCceeeCCHHHHhcCCCEEEEc
Confidence            4799999 999999999987555688866 447653210000  0    0001121222333457999999999999987


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      .+  |+..   .+..-..++.|.-+|-.+.|
T Consensus        96 T~--p~a~---~~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A           96 SQ--PQAS---VLYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             SC--HHHH---HHHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHH---HHHHHHHHHcCCCEEEECCC
Confidence            75  3321   11122234556666665566

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.20  E-value=0.022  Score=55.03  Aligned_cols=76  Identities=20%  Similarity=0.263  Sum_probs=43.9

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhH--HHHHH--hhhhh------hhhhcCCCCccccccCCHHHHhh
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATR--LEKFV--TAYGQ------FLKANGEQPVTWKRASSMDEVLR  235 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~~~~~~--~~~~~--~~~~~------~~~~~~~~~~~~~~~~~l~ell~  235 (386)
                      +|||+|+|.||+.+++.|...-++++.+. |+.....  ...+.  ..|+.      .....+   ..+  ..+.++++.
T Consensus         3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~---l~v--~~~~~~~~~   77 (337)
T 1cf2_P            3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAG---IEV--AGTVDDMLD   77 (337)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTT---CCC--CEEHHHHHH
T ss_pred             EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCc---eEE--cCCHHHHhc
Confidence            79999999999999998753357887654 4432211  11100  00000      000000   000  125678888


Q ss_pred             hCCEEEEccCCC
Q 016620          236 EADVISLHPVLD  247 (386)
Q Consensus       236 ~aDiVvl~lPlt  247 (386)
                      .+|+|+.|+|..
T Consensus        78 ~vDvV~~atp~~   89 (337)
T 1cf2_P           78 EADIVIDCTPEG   89 (337)
T ss_dssp             TCSEEEECCSTT
T ss_pred             CCCEEEECCCch
Confidence            999999999964

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.20  E-value=0.024  Score=54.43  Aligned_cols=92  Identities=17%  Similarity=0.126  Sum_probs=62.0

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++.....  +       +++.+.....    .+.+++.+..|+|+-+
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~-------~~~lGa~~v~----~~~~~~~~~~D~vid~  241 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYA-VAMGAEVSVFARNEHKKQ--D-------ALSMGVKHFY----TDPKQCKEELDFIIST  241 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHTTCEEEEECSSSTTHH--H-------HHHTTCSEEE----SSGGGCCSCEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCeEEEEeCCHHHHH--H-------HHhcCCCeec----CCHHHHhcCCCEEEEC
Confidence            688999999999999999985 789999999987765421  1       1222322111    2223333368999888


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      .....     .-...++.++++..++.++..
T Consensus       242 ~g~~~-----~~~~~~~~l~~~G~iv~~G~~  267 (348)
T 3two_A          242 IPTHY-----DLKDYLKLLTYNGDLALVGLP  267 (348)
T ss_dssp             CCSCC-----CHHHHHTTEEEEEEEEECCCC
T ss_pred             CCcHH-----HHHHHHHHHhcCCEEEEECCC
Confidence            87431     124567788888888888653

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=95.17  E-value=0.79  Score=43.89  Aligned_cols=165  Identities=12%  Similarity=0.092  Sum_probs=91.5

Q ss_pred             cEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCe
Q 016620           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (386)
Q Consensus        88 k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~  167 (386)
                      ..|+.+.-+-..+. ..++-.+|+|.|.-.....++  .+++=++.+.+++..          ..+     ....+.|.+
T Consensus       102 D~iviR~~~~~~~~-~lA~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~g~----------~~~-----~~~~l~gl~  163 (328)
T 3grf_A          102 DICTARLATKEMMR-EMAQHASVPCINALDDFGHPL--QMVCDFMTIKEKFTA----------AGE-----FSNGFKGIK  163 (328)
T ss_dssp             SEEEEECSSHHHHH-HHHHHCSSCEEESSCSSCCHH--HHHHHHHHHHHHHHH----------TTC-----CTTTGGGCC
T ss_pred             CEEEEecCChhHHH-HHHHhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHhCC----------ccc-----cccccCCcE
Confidence            45555543322222 234556799999765433222  234434444443210          000     113589999


Q ss_pred             EEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhh--HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          168 VGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       168 vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      |+++|=|  ++..+.+..+ ..||++|.+..|..-.  ..+...+...+.....+ .+..+....+++|.++++|+|..-
T Consensus       164 va~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~-~g~~v~~~~d~~eav~~aDvvytd  241 (328)
T 3grf_A          164 FAYCGDSMNNVTYDLMRGC-ALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHG-TGGSIKIFHDCKKGCEGVDVVYTD  241 (328)
T ss_dssp             EEEESCCSSHHHHHHHHHH-HHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHT-CCCEEEEESSHHHHHTTCSEEEEC
T ss_pred             EEEeCCCCcchHHHHHHHH-HHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhcc-CCCeEEEEcCHHHHhcCCCEEEec
Confidence            9999976  7888888876 4789999999875322  11111110000001100 112233457999999999999874


Q ss_pred             c----C-CChh--------hhhcccHHHHhcCCCCcEEEEcC
Q 016620          244 P----V-LDKT--------TYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       244 l----P-lt~~--------t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +    - ..++        ...-++.+.++.+|++++|.-+.
T Consensus       242 ~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          242 SWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             CCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred             CccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCC
Confidence            2    2 1110        12347888888889888887663

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=95.16  E-value=0.032  Score=53.72  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=25.9

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      +|||+|+|.||+.+.|.|...-.++|.+.+..
T Consensus         3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~   34 (330)
T 1gad_O            3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            79999999999999998754446788777544

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.15  E-value=0.019  Score=55.79  Aligned_cols=93  Identities=19%  Similarity=0.288  Sum_probs=60.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHHhhhCCEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  240 (386)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++.....  +       .++.+....  ....+   .+++....|+|
T Consensus       194 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~Vi~~~~~~~~~~--~-------a~~lGa~~v--i~~~~~~~~~~~~~g~Dvv  261 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAKRE--A-------AKALGADEV--VNSRNADEMAAHLKSFDFI  261 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGGHH--H-------HHHHTCSEE--EETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--H-------HHHcCCcEE--eccccHHHHHHhhcCCCEE
Confidence            578999999999999999985 789999999998765421  1       111122111  11111   12223467999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +-++.....     -...++.++++..++.++.
T Consensus       262 id~~g~~~~-----~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          262 LNTVAAPHN-----LDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             EECCSSCCC-----HHHHHTTEEEEEEEEECCC
T ss_pred             EECCCCHHH-----HHHHHHHhccCCEEEEecc
Confidence            888864211     2456778888888888865

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.043  Score=52.60  Aligned_cols=95  Identities=14%  Similarity=0.145  Sum_probs=62.1

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc-cccCCHHHHhh-----h
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRASSMDEVLR-----E  236 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~ell~-----~  236 (386)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++.... + .       .+..+...... ....++.+.+.     .
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~V~~~~~~~~~~-~-~-------~~~~g~~~~~d~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYA-KAMGYRVLGIDGGEGKE-E-L-------FRSIGGEVFIDFTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSTTHH-H-H-------HHHTTCCEEEETTTCSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCcEEEEcCCHHHH-H-H-------HHHcCCceEEecCccHhHHHHHHHHhCCC
Confidence            5789999999 89999999986 68999999999875432 1 1       11112211101 11234554443     4


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+.+....+.     -...++.|+++..+|+++.
T Consensus       239 ~D~vi~~~g~~~~-----~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          239 AHGVINVSVSEAA-----IEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             EEEEEECSSCHHH-----HHHHTTSEEEEEEEEECCC
T ss_pred             CCEEEECCCcHHH-----HHHHHHHHhcCCEEEEEeC
Confidence            7999888763221     2556778888889998875

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=95.13  E-value=0.034  Score=51.32  Aligned_cols=110  Identities=16%  Similarity=0.225  Sum_probs=64.0

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc----cccccCCHHHHhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV----TWKRASSMDEVLR  235 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~ell~  235 (386)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|++.+++.....+...+.    +...+..-.    ......+++++++
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Dv~~~~~v~~~~~   88 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLG-RLGAKVVVNYANSTKDAEKVVSE----IKALGSDAIAIKADIRQVPEIVKLFD   88 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHH----HHHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHH----HHhcCCcEEEEEcCCCCHHHHHHHHH
Confidence            4689999999987 689999999985 78999998776544333222111    111111100    0011122333443


Q ss_pred             -------hCCEEEEccCCCh---------hh-h-----h-----cccHHHHhcCCCCcEEEEcCCCc
Q 016620          236 -------EADVISLHPVLDK---------TT-Y-----H-----LINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       236 -------~aDiVvl~lPlt~---------~t-~-----~-----li~~~~~~~mk~gailIN~aRg~  275 (386)
                             .-|+++.+.-...         +. .     +     .+.+..+..|+++..+||++...
T Consensus        89 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~  155 (270)
T 3is3_A           89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNT  155 (270)
T ss_dssp             HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTT
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCch
Confidence                   5699887754321         10 0     0     12345677888888888887743

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=95.12  E-value=0.069  Score=53.05  Aligned_cols=117  Identities=17%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCCh--------------hhHHHHHHhhhhhhhhhcCCCCcccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ--------------ATRLEKFVTAYGQFLKANGEQPVTWK  225 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (386)
                      .++.|++|.|.|+|++|+..|+.| ...|++|+. .|.+.              ...+.++.+... .+.   ..+ .. 
T Consensus       208 ~~l~g~~vaVqG~GnVG~~~a~~L-~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g-~i~---~~~-~a-  280 (421)
T 2yfq_A          208 IKMEDAKIAVQGFGNVGTFTVKNI-ERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANK-TLI---GFP-GA-  280 (421)
T ss_dssp             CCGGGSCEEEECCSHHHHHHHHHH-HHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHC-C------------
T ss_pred             CCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcC-Ccc---cCC-Cc-
Confidence            468999999999999999999998 579999984 45541              012222111100 000   000 00 


Q ss_pred             ccCCHHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       226 ~~~~l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ...+.++++ ..||+++-|..     .+.|+.+....+ +..+++-.+-+++- .+ -.+.|++..+.
T Consensus       281 ~~i~~~~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          281 ERITDEEFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             --------------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             eEeCccchhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            111223332 47999998875     456788887878 46688888988874 22 23445544443

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=95.12  E-value=0.024  Score=52.42  Aligned_cols=38  Identities=21%  Similarity=0.273  Sum_probs=32.9

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+.|+++.|.|.   |.||+++|+.|+ ..|++|+..+|+..
T Consensus         3 ~l~~k~vlVTGas~~~gIG~~~a~~l~-~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            3 FLKGKKGLIVGVANNKSIAYGIAQSCF-NQGATLAFTYLNES   43 (275)
T ss_dssp             TTTTCEEEEECCCSTTSHHHHHHHHHH-TTTCEEEEEESSTT
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            378899999997   699999999985 67999999998764

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.11  E-value=0.029  Score=54.15  Aligned_cols=31  Identities=29%  Similarity=0.504  Sum_probs=24.7

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~  197 (386)
                      +|||+|+|.||+.+++.|...-+++|.+...
T Consensus         5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI~d   35 (337)
T 3e5r_O            5 KIGINGFGRIGRLVARVALQSEDVELVAVND   35 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHhCCCCeEEEEEEC
Confidence            7999999999999999874333678776653

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.09  E-value=0.031  Score=53.56  Aligned_cols=94  Identities=23%  Similarity=0.226  Sum_probs=59.2

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh------
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------  235 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------  235 (386)
                      -.|++|.|+|. |.||...++.+ +.+|++|++.+++.....  +       .++.+........ .++.+.+.      
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~-------~~~~ga~~v~~~~-~~~~~~v~~~~~~~  226 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIA-KGMGAKVIAVVNRTAATE--F-------VKSVGADIVLPLE-EGWAKAVREATGGA  226 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSGGGHH--H-------HHHHTCSEEEESS-TTHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHH--H-------HHhcCCcEEecCc-hhHHHHHHHHhCCC
Confidence            36889999998 99999999985 799999999998765421  1       1111221111111 33333221      


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ..|+|+.+....      .-...+..++++..++.++.
T Consensus       227 g~Dvvid~~g~~------~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          227 GVDMVVDPIGGP------AFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             CEEEEEESCC--------CHHHHHHTEEEEEEEEEC--
T ss_pred             CceEEEECCchh------HHHHHHHhhcCCCEEEEEEc
Confidence            478888887641      23567778888888888753

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.08  E-value=0.018  Score=55.91  Aligned_cols=101  Identities=13%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh----cCCCCccccccCCHHHHhh-hCCE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA----NGEQPVTWKRASSMDEVLR-EADV  239 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~ell~-~aDi  239 (386)
                      .+|+|+| .|.||+.+++.|...-..+|.+..++....-..+.+.++ .+..    .+...... ...+++++++ .+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Dv   86 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACY-WFQDRDIPENIKDMVV-IPTDPKHEEFEDVDI   86 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSC-CCCSSCCCHHHHTCBC-EESCTTSGGGTTCCE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcc-cccccccccCceeeEE-EeCCHHHHhcCCCCE
Confidence            4799999 899999999987432346877663211110000101110 0000    00000011 1124455556 8999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |++|+|... +..+ -...   .+.|+.+|+.+-
T Consensus        87 V~~atp~~~-~~~~-a~~~---~~aG~~VId~s~  115 (354)
T 1ys4_A           87 VFSALPSDL-AKKF-EPEF---AKEGKLIFSNAS  115 (354)
T ss_dssp             EEECCCHHH-HHHH-HHHH---HHTTCEEEECCS
T ss_pred             EEECCCchH-HHHH-HHHH---HHCCCEEEECCc
Confidence            999999522 2221 1222   346788888764

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.07  E-value=0.054  Score=52.68  Aligned_cols=98  Identities=14%  Similarity=0.242  Sum_probs=55.0

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ...+|+|+| +|.||+.+++.|...-.+++.+........ .++...++ .+.........   ..+ ++.+..+|+|+.
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~~~~-~~~~~v~~dl~---~~~-~~~~~~vDvVf~   88 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMESVFP-HLRAQKLPTLV---SVK-DADFSTVDAVFC   88 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHHHCG-GGTTSCCCCCB---CGG-GCCGGGCSEEEE
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHHhCc-hhcCcccccce---ecc-hhHhcCCCEEEE
Confidence            346899999 899999999998533345777775433211 11111111 01100000111   112 445678999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+|....      .+.....+.|+.+|+.+-
T Consensus        89 atp~~~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           89 CLPHGTT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             CCCTTTH------HHHHHTSCTTCEEEECSS
T ss_pred             cCCchhH------HHHHHHHhCCCEEEECCc
Confidence            9995332      222222277899999875

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.07  E-value=0.024  Score=54.04  Aligned_cols=97  Identities=18%  Similarity=0.087  Sum_probs=61.9

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----h
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  236 (386)
                      -.|++|.|+|. |.||..+++.+ +..|++|++.+++......  .      .+..+..........++.+.+.     .
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~--~------~~~~g~~~~~~~~~~~~~~~~~~~~~~~  218 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAGGAEKCRF--L------VEELGFDGAIDYKNEDLAAGLKRECPKG  218 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHH--H------HHTTCCSEEEETTTSCHHHHHHHHCTTC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH--H------HHHcCCCEEEECCCHHHHHHHHHhcCCC
Confidence            36889999999 99999999986 7899999999987654211  1      0122221111111123333332     3


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      .|+|+.+...  +    .-...++.++++..++.++..
T Consensus       219 ~d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          219 IDVFFDNVGG--E----ILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             EEEEEESSCH--H----HHHHHHTTEEEEEEEEECCCG
T ss_pred             ceEEEECCCc--c----hHHHHHHHHhhCCEEEEEeec
Confidence            7888887752  1    135677788888888888653

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=95.06  E-value=0.052  Score=50.85  Aligned_cols=39  Identities=21%  Similarity=0.202  Sum_probs=33.1

Q ss_pred             cccCCCeEEEEec-Ch--hHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          161 NLLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~--IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ..+.||++.|.|. |.  ||+++|+.|+ ..|++|+..+++..
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la-~~G~~V~~~~r~~~   68 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAR-EAGAELAFTYQGDA   68 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHH-HTTCEEEEEECSHH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            3589999999998 45  9999999985 68999999998743

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=95.06  E-value=0.034  Score=52.80  Aligned_cols=67  Identities=10%  Similarity=0.024  Sum_probs=46.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---------
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  234 (386)
                      .+|||||+ |.||+..++.+ +..+.++. ++|++....  ..        ...  . .....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~--------~~~--~-~~~~~~~~~~~ll~~~~~l~~~   69 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAI-KEVGGVLVASLDPATNVG--LV--------DSF--F-PEAEFFTEPEAFEAYLEDLRDR   69 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GG--------GGT--C-TTCEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCChHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HH--------Hhh--C-CCCceeCCHHHHHHHhhhhccc
Confidence            47999999 78999999987 45688754 677765431  10        000  0 1123457888887         


Q ss_pred             -hhCCEEEEccCC
Q 016620          235 -READVISLHPVL  246 (386)
Q Consensus       235 -~~aDiVvl~lPl  246 (386)
                       .+.|+|++|+|.
T Consensus        70 ~~~vD~V~I~tP~   82 (312)
T 3o9z_A           70 GEGVDYLSIASPN   82 (312)
T ss_dssp             TCCCSEEEECSCG
T ss_pred             CCCCcEEEECCCc
Confidence             578999999995

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=95.05  E-value=0.066  Score=50.89  Aligned_cols=106  Identities=15%  Similarity=0.123  Sum_probs=68.1

Q ss_pred             cccCCCeEEEE-ec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--
Q 016620          161 NLLKGQTVGVI-GA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (386)
Q Consensus       161 ~~l~g~~vgIv-G~-G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (386)
                      .-+..+++.|| |+ |..|+.+++.| +..|.+++ ..+|.....             +  .  .+...+.+++|+..  
T Consensus         9 ~l~~~~siaVV~Gasg~~G~~~~~~l-~~~G~~~v~~VnP~~~g~-------------~--i--~G~~vy~sl~el~~~~   70 (305)
T 2fp4_A            9 LYVDKNTKVICQGFTGKQGTFHSQQA-LEYGTNLVGGTTPGKGGK-------------T--H--LGLPVFNTVKEAKEQT   70 (305)
T ss_dssp             GCCCTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-------------E--E--TTEEEESSHHHHHHHH
T ss_pred             HHhCCCcEEEEECCCCCHHHHHHHHH-HHCCCcEEEEeCCCcCcc-------------e--E--CCeeeechHHHhhhcC
Confidence            34667889999 99 99999999987 56788843 566643110             0  0  11223568999988  


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCC-cEEEEcCCCcc-cCHHHHHHHHHcC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSRGPV-IDEVALVEHLKQN  289 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~g-ailIN~aRg~~-vde~aL~~aL~~g  289 (386)
                      ..|++++++|. +.....+ ++..+   .| ..+|+.+-|-. -++..|.+.+++.
T Consensus        71 ~vD~avI~vP~-~~~~~~~-~e~i~---~Gi~~iv~~t~G~~~~~~~~l~~~a~~~  121 (305)
T 2fp4_A           71 GATASVIYVPP-PFAAAAI-NEAID---AEVPLVVCITEGIPQQDMVRVKHRLLRQ  121 (305)
T ss_dssp             CCCEEEECCCH-HHHHHHH-HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHTTC
T ss_pred             CCCEEEEecCH-HHHHHHH-HHHHH---CCCCEEEEECCCCChHHHHHHHHHHHhc
Confidence            89999999994 2223333 33333   23 24566777643 3445888888876

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.05  E-value=0.06  Score=52.28  Aligned_cols=96  Identities=18%  Similarity=0.100  Sum_probs=61.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc--cCCHHHHhh----
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR----  235 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~ell~----  235 (386)
                      -.|.+|.|+|.|.||...++.+ +..|+ +|++.+++.....  +       .++.+........  ..++.+.+.    
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a-~~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~~~i~~~~~  261 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGA-KTAGASRIIGIDIDSKKYE--T-------AKKFGVNEFVNPKDHDKPIQEVIVDLTD  261 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHH-HHHTCSCEEEECSCTTHHH--H-------HHTTTCCEEECGGGCSSCHHHHHHHHTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEEcCCHHHHH--H-------HHHcCCcEEEccccCchhHHHHHHHhcC
Confidence            3688999999999999999985 78999 8999997765421  1       1222322211111  234444333    


Q ss_pred             -hCCEEEEccCCChhhhhcccHHHHhcCCCC-cEEEEcCC
Q 016620          236 -EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (386)
Q Consensus       236 -~aDiVvl~lPlt~~t~~li~~~~~~~mk~g-ailIN~aR  273 (386)
                       ..|+|+-+... +++    -...++.++++ ..++.++-
T Consensus       262 gg~D~vid~~g~-~~~----~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          262 GGVDYSFECIGN-VSV----MRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             SCBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCCEEEECCCC-HHH----HHHHHHHhhccCCEEEEEcc
Confidence             37999988863 221    24567778885 78887764

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.99  E-value=0.069  Score=46.83  Aligned_cols=96  Identities=11%  Similarity=0.077  Sum_probs=57.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|.|.|. |.||+.+++.|+ .-|.+|++.+|+.......         . .+....  ..... +. +.+..+|+|+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~---------~-~~~~~~~~D~~d~-~~-~~~~~~d~vi~   67 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAK-NRGHEVTAIVRNAGKITQT---------H-KDINILQKDIFDL-TL-SDLSDQNVVVD   67 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCSHHHHHH---------C-SSSEEEECCGGGC-CH-HHHTTCSEEEE
T ss_pred             CeEEEEcCCchhHHHHHHHHH-hCCCEEEEEEcCchhhhhc---------c-CCCeEEeccccCh-hh-hhhcCCCEEEE
Confidence            47899995 999999999984 6799999999986542110         0 000000  00111 11 67889999999


Q ss_pred             ccCCChhhhh---cccHHHHhcCCC--CcEEEEcCCC
Q 016620          243 HPVLDKTTYH---LINKERLATMKK--EAILVNCSRG  274 (386)
Q Consensus       243 ~lPlt~~t~~---li~~~~~~~mk~--gailIN~aRg  274 (386)
                      +.........   ......+..|++  ...+|.+|..
T Consensus        68 ~ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           68 AYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CCCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CCcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            8876433211   112345555543  3567777654

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=94.97  E-value=0.024  Score=53.21  Aligned_cols=93  Identities=15%  Similarity=0.085  Sum_probs=58.0

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHHHhhhCCEEE
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLREADVIS  241 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~~aDiVv  241 (386)
                      .|++|.|+|. |.+|..+++.+ +..|++|++.+++......         .++.+......... .++.+.+...|+|+
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~---------~~~~ga~~~~~~~~~~~~~~~~~~~d~vi  194 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLAL---------PLALGAEEAATYAEVPERAKAWGGLDLVL  194 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGSHH---------HHHTTCSEEEEGGGHHHHHHHTTSEEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---------HHhcCCCEEEECCcchhHHHHhcCceEEE
Confidence            5789999998 99999999985 7899999999986544211         11122211100011 12333335678888


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      . ...  +    .-...++.|+++..++.++-
T Consensus       195 d-~g~--~----~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          195 E-VRG--K----EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             E-CSC--T----THHHHHTTEEEEEEEEEC--
T ss_pred             E-CCH--H----HHHHHHHhhccCCEEEEEeC
Confidence            7 653  1    12566777888888887754

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=94.97  E-value=0.031  Score=53.86  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=61.4

Q ss_pred             cCCCeEEEE-ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----h
Q 016620          163 LKGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (386)
Q Consensus       163 l~g~~vgIv-G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  236 (386)
                      -.|++|.|+ |.|.||..+++.+ +..|++|++.+++......         +++.+..........++.+.+.     .
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~---------~~~lGa~~~~~~~~~~~~~~~~~~~~~g  235 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAGSTGKCEA---------CERLGAKRGINYRSEDFAAVIKAETGQG  235 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHH---------HHHHTCSEEEETTTSCHHHHHHHHHSSC
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHH---------HHhcCCCEEEeCCchHHHHHHHHHhCCC
Confidence            368899999 6899999999986 7899999999987654211         1112221111111223433332     4


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+.+...  .    .-...+..++++..++.++.
T Consensus       236 ~Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          236 VDIILDMIGA--A----YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEEEESCCG--G----GHHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCCH--H----HHHHHHHHhccCCEEEEEEe
Confidence            7888888763  1    12556778888888888764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.96  E-value=0.078  Score=48.47  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=32.6

Q ss_pred             ccCCCeEEEEec-Ch--hHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~--IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ++.|+++.|.|. |.  ||+++|+.|+ ..|++|+..+++..
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~-~~G~~V~~~~r~~~   44 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLH-EAGARLIFTYAGER   44 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEecCchH
Confidence            588999999997 55  9999999985 67999999988753

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=94.95  E-value=0.087  Score=48.32  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +|+||++.|-|.+   .||+++|+.|+ ..|++|+..+|+...
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la-~~Ga~Vvi~~r~~~~   44 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLD-QLGAKLVFTYRKERS   44 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHH-HTTCEEEEEESSGGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            5899999999985   59999999985 789999999987643

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=94.94  E-value=0.046  Score=51.95  Aligned_cols=95  Identities=20%  Similarity=0.114  Sum_probs=61.1

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CCHHHHhh-----
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SSMDEVLR-----  235 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ell~-----  235 (386)
                      -.|++|.|.|. |.||..+++.+ +..|++|++.+++......         .+..+......... .++.+.+.     
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~~~---------~~~~g~~~~~d~~~~~~~~~~~~~~~~~  213 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKIAY---------LKQIGFDAAFNYKTVNSLEEALKKASPD  213 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHH-HHTTCEEEEEESSHHHHHH---------HHHTTCSEEEETTSCSCHHHHHHHHCTT
T ss_pred             CCCCEEEEecCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---------HHhcCCcEEEecCCHHHHHHHHHHHhCC
Confidence            36889999998 99999999986 6899999999987543211         11112111101111 34444432     


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ..|+|+.+...  .+    -...++.++++..++.++-
T Consensus       214 ~~d~vi~~~g~--~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          214 GYDCYFDNVGG--EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             CEEEEEESSCH--HH----HHHHHTTEEEEEEEEECCC
T ss_pred             CCeEEEECCCh--HH----HHHHHHHHhcCCEEEEEec
Confidence            36888888762  11    2566788888888888864

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=94.94  E-value=0.089  Score=51.09  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=45.3

Q ss_pred             CeEEEEe-cChhHHH-HH----HHHHhcCCcEE----------EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC
Q 016620          166 QTVGVIG-AGRIGSA-YA----RMMVEGFKMNL----------IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~-iA----~~L~~~fg~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (386)
                      .+||||| +|.||+. .+    +.+.+.-+..+          .++|++.... +.+.+.|       +..    ..+.+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a-~~~a~~~-------~~~----~~~~~   74 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKV-EALAKRF-------NIA----RWTTD   74 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHH-HHHHHHT-------TCC----CEESC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHH-HHHHHHh-------CCC----cccCC
Confidence            4799999 9999998 66    55533333332          3888876543 2221111       211    13579


Q ss_pred             HHHHhhh--CCEEEEccCCC
Q 016620          230 MDEVLRE--ADVISLHPVLD  247 (386)
Q Consensus       230 l~ell~~--aDiVvl~lPlt  247 (386)
                      +++++++  .|+|++|+|..
T Consensus        75 ~~~ll~~~~iD~V~i~tp~~   94 (383)
T 3oqb_A           75 LDAALADKNDTMFFDAATTQ   94 (383)
T ss_dssp             HHHHHHCSSCCEEEECSCSS
T ss_pred             HHHHhcCCCCCEEEECCCch
Confidence            9999976  89999999963

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=94.88  E-value=0.021  Score=51.47  Aligned_cols=71  Identities=21%  Similarity=0.238  Sum_probs=46.2

Q ss_pred             CCeEEEEecChhHHHHHHHHH-hcCCcEEE-EEcCChh-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCE
Q 016620          165 GQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~-~~fg~~V~-~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDi  239 (386)
                      ..+|+|+|.|++|+.+++.+. ...|+++. ++|.++. ..           .. +...+..+....++++++++  .|+
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~ki-----------G~-~~i~GvpV~~~~dL~~~v~~~~Id~  151 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLV-----------GK-TTEDGIPVYGISTINDHLIDSDIET  151 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTT-----------TC-BCTTCCBEEEGGGHHHHC-CCSCCE
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhcc-----------Cc-eeECCeEEeCHHHHHHHHHHcCCCE
Confidence            347999999999999998621 35688866 4576554 21           00 00112333345788888874  899


Q ss_pred             EEEccCCC
Q 016620          240 ISLHPVLD  247 (386)
Q Consensus       240 Vvl~lPlt  247 (386)
                      +++|+|..
T Consensus       152 vIIAvPs~  159 (212)
T 3keo_A          152 AILTVPST  159 (212)
T ss_dssp             EEECSCGG
T ss_pred             EEEecCch
Confidence            99999953

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=94.87  E-value=0.034  Score=53.67  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=45.2

Q ss_pred             CeEEEEecChhHHHHHHHHHh--c-----CCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--
Q 016620          166 QTVGVIGAGRIGSAYARMMVE--G-----FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~--~-----fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--  235 (386)
                      -+|||||+|.||+.-++.+++  .     .+++|. ++|++.... +++.+.|       +.    ...+.+++++++  
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a-~~~a~~~-------g~----~~~~~d~~~ll~~~   74 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAV-RAAAGKL-------GW----STTETDWRTLLERD   74 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHH-HHHHHHH-------TC----SEEESCHHHHTTCT
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHH-HHHHHHc-------CC----CcccCCHHHHhcCC
Confidence            479999999999987766532  1     134544 668876542 2222222       21    123578999996  


Q ss_pred             hCCEEEEccCCC
Q 016620          236 EADVISLHPVLD  247 (386)
Q Consensus       236 ~aDiVvl~lPlt  247 (386)
                      +.|+|++|+|..
T Consensus        75 ~iDaV~I~tP~~   86 (390)
T 4h3v_A           75 DVQLVDVCTPGD   86 (390)
T ss_dssp             TCSEEEECSCGG
T ss_pred             CCCEEEEeCChH
Confidence            478999999953

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=94.81  E-value=0.035  Score=53.70  Aligned_cols=31  Identities=26%  Similarity=0.216  Sum_probs=24.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d  196 (386)
                      .+|||+|+|.||+.+++.|...-+++|.+..
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~   33 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVT   33 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            3799999999999999987432368876553

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.81  E-value=0.043  Score=53.07  Aligned_cols=95  Identities=14%  Similarity=-0.017  Sum_probs=57.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh----h--h
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----R--E  236 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell----~--~  236 (386)
                      -.|++|.|+|.|.||...++.+ +.+|++|++.+++.....  +.       ++.+..........++.+.+    .  .
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~~-------~~lGa~~vi~~~~~~~~~~v~~~~~g~g  257 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIA-KATGAEVIVTSSSREKLD--RA-------FALGADHGINRLEEDWVERVYALTGDRG  257 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHH-HHTTCEEEEEESCHHHHH--HH-------HHHTCSEEEETTTSCHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCchhHH--HH-------HHcCCCEEEcCCcccHHHHHHHHhCCCC
Confidence            3688999999999999999985 799999999998764421  11       11122111111112332222    1  4


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+-+...  ++    -...++.++++..++.++.
T Consensus       258 ~D~vid~~g~--~~----~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          258 ADHILEIAGG--AG----LGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             EEEEEEETTS--SC----HHHHHHHEEEEEEEEEECC
T ss_pred             ceEEEECCCh--HH----HHHHHHHhhcCCEEEEEec
Confidence            6777777652  11    2445666777777777653

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.79  E-value=0.068  Score=49.34  Aligned_cols=37  Identities=19%  Similarity=0.271  Sum_probs=32.5

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|+..+++
T Consensus         6 ~~l~gk~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~~~   43 (287)
T 3pxx_A            6 GRVQDKVVLVTGGARGQGRSHAVKLA-EEGADIILFDIC   43 (287)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECC
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEccc
Confidence            3589999999987 789999999985 789999999876

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=94.78  E-value=0.11  Score=50.30  Aligned_cols=102  Identities=17%  Similarity=0.246  Sum_probs=57.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCC------cEEEEEcC-Chh-hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFK------MNLIYYDL-YQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg------~~V~~~d~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      .+|+|+| .|.+|+.+.+.|. ..+      .++..+.+ +.. .....   .+ ..+...  ....... .+. +.+..
T Consensus        10 ~kVaIvGATG~vG~~llr~L~-~~~~~~~~~~ei~~l~s~~~agk~~~~---~~-~~l~~~--~~~~~~~-~~~-~~~~~   80 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLL-GHPAYADGRLRIGALTAATSAGSTLGE---HH-PHLTPL--AHRVVEP-TEA-AVLGG   80 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHH-TCHHHHTTSEEEEEEEESSCTTSBGGG---TC-TTCGGG--TTCBCEE-CCH-HHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHH-cCCCCCCccEEEEEEECCCcCCCchhh---hc-cccccc--ceeeecc-CCH-HHhcC
Confidence            6899999 9999999999974 444      56666642 211 11110   00 000000  0111111 233 34568


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL  282 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL  282 (386)
                      +|+|+.|+|...      ..+....++.|+.+|+.|.---.+.++.
T Consensus        81 ~DvVf~alg~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~~  120 (352)
T 2nqt_A           81 HDAVFLALPHGH------SAVLAQQLSPETLIIDCGADFRLTDAAV  120 (352)
T ss_dssp             CSEEEECCTTSC------CHHHHHHSCTTSEEEECSSTTTCSCHHH
T ss_pred             CCEEEECCCCcc------hHHHHHHHhCCCEEEEECCCccCCcchh
Confidence            999999999643      3444444467899999876544444343

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=94.77  E-value=0.047  Score=52.80  Aligned_cols=95  Identities=16%  Similarity=0.183  Sum_probs=52.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .+|||+| .|.||+.+.+.|...-..++.+..+..... ..+.+.++ .+.  +.....   ..++++ +..+|+|+.|+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g-~~~~~~~~-~~~--g~~~~~---~~~~~~-~~~vDvV~~a~   76 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAG-EPVHFVHP-NLR--GRTNLK---FVPPEK-LEPADILVLAL   76 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTT-SBGGGTCG-GGT--TTCCCB---CBCGGG-CCCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhC-chhHHhCc-hhc--Cccccc---ccchhH-hcCCCEEEEcC
Confidence            5799999 799999999998433345776665432211 01111110 000  101111   123334 47899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |.... ..+. ...   ++.|+.+|+.|-
T Consensus        77 g~~~s-~~~a-~~~---~~aG~~VId~Sa  100 (345)
T 2ozp_A           77 PHGVF-AREF-DRY---SALAPVLVDLSA  100 (345)
T ss_dssp             CTTHH-HHTH-HHH---HTTCSEEEECSS
T ss_pred             CcHHH-HHHH-HHH---HHCCCEEEEcCc
Confidence            96432 2221 222   366888998875

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=94.77  E-value=0.03  Score=55.36  Aligned_cols=78  Identities=13%  Similarity=0.087  Sum_probs=48.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC---cEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhh--CC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLRE--AD  238 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~--aD  238 (386)
                      ++|+|+|.|.||+.+++.|+ ..|   .+|.+++|+.... ++..+.+.... .....  ........++++++++  +|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~-~~g~~~~~V~v~~r~~~~~-~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMA-MNREVFSHITLASRTLSKC-QEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TCTTTCCEEEEEESCHHHH-HHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCceEEEEEECCHHHH-HHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            57999999999999999985 555   4899999987542 22222111000 00000  0001112456778887  89


Q ss_pred             EEEEccCC
Q 016620          239 VISLHPVL  246 (386)
Q Consensus       239 iVvl~lPl  246 (386)
                      +|+.++|.
T Consensus        79 vVin~ag~   86 (405)
T 4ina_A           79 IVLNIALP   86 (405)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCCc
Confidence            99999884

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=94.76  E-value=0.038  Score=53.49  Aligned_cols=95  Identities=11%  Similarity=0.041  Sum_probs=59.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----hC
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (386)
                      .|++|.|+|.|.||...++.+ +.+|+ +|++.+++.....  +       .++.+..........++.+.+.     ..
T Consensus       190 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~vi~~~~~~~~~~~~~~~~gg~  259 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRLE--L-------AKQLGATHVINSKTQDPVAAIKEITDGGV  259 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHHH--H-------HHHHTCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCeEEEECCCHHHHH--H-------HHHcCCCEEecCCccCHHHHHHHhcCCCC
Confidence            578999999999999999975 78999 7999988764421  1       1112221111111123333322     36


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+|+-+... +++    -...++.++++..++.++-
T Consensus       260 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          260 NFALESTGS-PEI----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEEECSCC-HHH----HHHHHHTEEEEEEEEECCC
T ss_pred             cEEEECCCC-HHH----HHHHHHHHhcCCEEEEeCC
Confidence            888888763 111    1456777888888888764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=94.72  E-value=0.043  Score=52.69  Aligned_cols=95  Identities=15%  Similarity=0.086  Sum_probs=58.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh------h
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (386)
                      .|.+|.|+|.|.||...++.+ +..|+ +|++.+++.....  +       .++.+..........++.+.+.      .
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla-~~~Ga~~Vi~~~~~~~~~~--~-------~~~lGa~~vi~~~~~~~~~~v~~~t~g~g  235 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGA-NHLGAGRIFAVGSRKHCCD--I-------ALEYGATDIINYKNGDIVEQILKATDGKG  235 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSSEEEECCCHHHHH--H-------HHHHTCCEEECGGGSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCcEEEEECCCHHHHH--H-------HHHhCCceEEcCCCcCHHHHHHHHcCCCC
Confidence            588999999999999999985 79999 7999998765321  1       1122222111111223333221      3


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+-+......     -...++.++++..++.++-
T Consensus       236 ~D~v~d~~g~~~~-----~~~~~~~l~~~G~~v~~G~  267 (352)
T 3fpc_A          236 VDKVVIAGGDVHT-----FAQAVKMIKPGSDIGNVNY  267 (352)
T ss_dssp             EEEEEECSSCTTH-----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCChHH-----HHHHHHHHhcCCEEEEecc
Confidence            7888877764211     1455667788877777753

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.67  E-value=0.068  Score=51.06  Aligned_cols=115  Identities=16%  Similarity=0.075  Sum_probs=69.2

Q ss_pred             CCeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEEEE
Q 016620          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISL  242 (386)
Q Consensus       165 g~~vgIvG~G~IG~~-iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiVvl  242 (386)
                      .++|.|||.|.+|.+ +|+.| +..|++|.++|........+.       ++..+.   .+..-.+.+++. .++|+|+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L-~~~G~~V~~~D~~~~~~~~~~-------L~~~gi---~v~~g~~~~~l~~~~~d~vV~   72 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIA-KEAGFEVSGCDAKMYPPMSTQ-------LEALGI---DVYEGFDAAQLDEFKADVYVI   72 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHH-HHTTCEEEEEESSCCTTHHHH-------HHHTTC---EEEESCCGGGGGSCCCSEEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHH-HhCCCEEEEEcCCCCcHHHHH-------HHhCCC---EEECCCCHHHcCCCCCCEEEE
Confidence            468999999999996 89887 689999999998653211111       222222   121112334444 47999998


Q ss_pred             ccCC---Chhhh-------hcccH-HHHhc--CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 016620          243 HPVL---DKTTY-------HLINK-ERLAT--MKK-EAILVNCSRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       243 ~lPl---t~~t~-------~li~~-~~~~~--mk~-gailIN~aRg~~vde~aL~~aL~~g~  290 (386)
                      ..-.   +|.-.       .++.+ +.|..  ++. ..+-|--+.|+.--..-|...|+...
T Consensus        73 Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           73 GNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             CTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             CCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            7433   23211       24444 33443  333 34567777898776677777777643

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=94.66  E-value=0.15  Score=48.86  Aligned_cols=102  Identities=16%  Similarity=0.158  Sum_probs=59.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCc-------EEEEEcCC----hhhHHHHHHhhhhhhhhhcC-CCCccccccCCHHH
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLY----QATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDE  232 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~-------~V~~~d~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~e  232 (386)
                      ++|+|+|. |.+|+.++..|+ .-|.       +|..+|+.    .. +.+.....    +.... ..........++.+
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~-~~~~~~~~~~~ev~l~Di~~~~~~~-~~~g~~~d----l~~~~~~~~~~i~~~~~~~~   79 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIA-NGDMLGKDQPVILQLLEIPNEKAQK-ALQGVMME----IDDCAFPLLAGMTAHADPMT   79 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHH-TTTTTCTTCCEEEEEECCSCHHHHH-HHHHHHHH----HHTTTCTTEEEEEEESSHHH
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCcCCCCCCEEEEEcCCCccccc-cchhhHHH----HhhhcccccCcEEEecCcHH
Confidence            58999998 999999998874 4453       89999987    32 11111000    11110 11112223367889


Q ss_pred             HhhhCCEEEEccCCChh---hhh-c--cc----H---HHHhcC-CCCcEEEEcCC
Q 016620          233 VLREADVISLHPVLDKT---TYH-L--IN----K---ERLATM-KKEAILVNCSR  273 (386)
Q Consensus       233 ll~~aDiVvl~lPlt~~---t~~-l--i~----~---~~~~~m-k~gailIN~aR  273 (386)
                      .++.||+|+++......   ++. +  .|    .   +.+... ++.++||+++-
T Consensus        80 al~~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           80 AFKDADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             HhCCCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            99999999988653221   110 1  01    1   122233 47889999974

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=94.65  E-value=0.05  Score=52.51  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=23.3

Q ss_pred             eEEEEecChhHHHHHHHHHhc--CCcEEEEEc
Q 016620          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  196 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~--fg~~V~~~d  196 (386)
                      +|||+|+|.||+.+.|.|...  -.++|.+.+
T Consensus         3 kVgInG~G~IGr~llR~l~~~~~p~~eivaIn   34 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            799999999999999987432  256776554

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=94.65  E-value=0.088  Score=52.43  Aligned_cols=74  Identities=18%  Similarity=0.240  Sum_probs=47.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC----CHHHHhh--hCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS----SMDEVLR--EAD  238 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~ell~--~aD  238 (386)
                      .+|||||+|.||+..++.+.+.-++++. ++|++.... +.+.+.    +...+...  ...+.    +++++++  +.|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~-~~~a~~----~~~~g~~~--~~~~~~~~~~~~~ll~~~~vD   93 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMV-GRAQEI----LKKNGKKP--AKVFGNGNDDYKNMLKDKNID   93 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHH-HHHHHH----HHHTTCCC--CEEECSSTTTHHHHTTCTTCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHH----HHhcCCCC--CceeccCCCCHHHHhcCCCCC
Confidence            4799999999999999887433477764 778876542 221110    11112111  11245    8999997  589


Q ss_pred             EEEEccCC
Q 016620          239 VISLHPVL  246 (386)
Q Consensus       239 iVvl~lPl  246 (386)
                      +|++|+|.
T Consensus        94 ~V~i~tp~  101 (444)
T 2ixa_A           94 AVFVSSPW  101 (444)
T ss_dssp             EEEECCCG
T ss_pred             EEEEcCCc
Confidence            99999995

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=94.64  E-value=0.082  Score=49.00  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+.|+++.|.|.   |.||+++|+.|+ ..|++|++.+|+..
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   58 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFH-REGAQLAFTYATPK   58 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            488999999998   599999999985 67999999998763

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=94.62  E-value=0.098  Score=50.06  Aligned_cols=73  Identities=22%  Similarity=0.286  Sum_probs=47.0

Q ss_pred             CCeEEEEe-cChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc---cCCHHHHhhhCC
Q 016620          165 GQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREAD  238 (386)
Q Consensus       165 g~~vgIvG-~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell~~aD  238 (386)
                      .++|+|+| .|.+|..++..|+ ..|  .+|..+|......  ...+     +.... .+.....   ..++++.++.||
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~-~~g~~~ev~l~Di~~~~~--~~~d-----L~~~~-~~~~v~~~~~t~d~~~al~gaD   78 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMK-MNPLVSVLHLYDVVNAPG--VTAD-----ISHMD-TGAVVRGFLGQQQLEAALTGMD   78 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHH-HCTTEEEEEEEESSSHHH--HHHH-----HHTSC-SSCEEEEEESHHHHHHHHTTCS
T ss_pred             CCEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEeCCCcHh--HHHH-----hhccc-ccceEEEEeCCCCHHHHcCCCC
Confidence            36899999 8999999999874 455  6899999765411  1000     11111 1111111   236778899999


Q ss_pred             EEEEccCC
Q 016620          239 VISLHPVL  246 (386)
Q Consensus       239 iVvl~lPl  246 (386)
                      +|+++.+.
T Consensus        79 vVi~~ag~   86 (326)
T 1smk_A           79 LIIVPAGV   86 (326)
T ss_dssp             EEEECCCC
T ss_pred             EEEEcCCc
Confidence            99999864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=94.54  E-value=0.064  Score=47.49  Aligned_cols=71  Identities=14%  Similarity=0.020  Sum_probs=46.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--CccccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|.|.| .|.||+.+++.| ..-|.+|++.+|+......         +. .+..  ........+++++++.+|+|+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~---------~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   73 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIKI---------EN-EHLKVKKADVSSLDEVCEVCKGADAVIS   73 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHH-HTTTCEEEEECSCGGGCCC---------CC-TTEEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHH-HHCCCEEEEEEcCcccchh---------cc-CceEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            6899999 599999999998 4779999999998653100         00 0000  0001112346678899999998


Q ss_pred             ccCCC
Q 016620          243 HPVLD  247 (386)
Q Consensus       243 ~lPlt  247 (386)
                      +....
T Consensus        74 ~a~~~   78 (227)
T 3dhn_A           74 AFNPG   78 (227)
T ss_dssp             CCCC-
T ss_pred             eCcCC
Confidence            87644

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=94.53  E-value=0.043  Score=53.05  Aligned_cols=94  Identities=18%  Similarity=0.139  Sum_probs=60.4

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----hC
Q 016620          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (386)
Q Consensus       164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (386)
                      .|++|.|+| .|.||..+++.+ +..|++|++.+++.....  +       +++.+..........++.+.+.     ..
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga~Vi~~~~~~~~~~--~-------~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~  232 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLS-KKAKCHVIGTCSSDEKSA--F-------LKSLGCDRPINYKTEPVGTVLKQEYPEGV  232 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHH-HHTTCEEEEEESSHHHHH--H-------HHHTTCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEECCHHHHH--H-------HHHcCCcEEEecCChhHHHHHHHhcCCCC
Confidence            588999999 799999999985 789999999998754321  1       1112221111111123444332     36


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+|+.+...  .    .-...++.++++..+|.++.
T Consensus       233 D~vid~~g~--~----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          233 DVVYESVGG--A----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEEECSCT--H----HHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCH--H----HHHHHHHHHhcCCEEEEEeC
Confidence            888888763  1    12456777888888888765

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=94.52  E-value=0.049  Score=51.86  Aligned_cols=95  Identities=15%  Similarity=0.113  Sum_probs=58.9

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------h
Q 016620          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  235 (386)
Q Consensus       163 l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  235 (386)
                      -.|++|.|+| .|.||...++.+ +..|++|++.+++.....  +       .++.+..........++.+.+      .
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~-------~~~~ga~~~~~~~~~~~~~~~~~~~~~~  216 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVASTDEKLK--I-------AKEYGAEYLINASKEDILRQVLKFTNGK  216 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSHHHHH--H-------HHHTTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--H-------HHHcCCcEEEeCCCchHHHHHHHHhCCC
Confidence            3688999999 899999999985 789999999998764421  1       112222111111112333222      1


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ..|+|+.+...  +    .-...++.++++..++.++.
T Consensus       217 g~D~vid~~g~--~----~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          217 GVDASFDSVGK--D----TFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             CEEEEEECCGG--G----GHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEEECCCh--H----HHHHHHHHhccCCEEEEEcC
Confidence            36888877753  1    12456677788878877753

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.49  E-value=0.2  Score=50.20  Aligned_cols=105  Identities=11%  Similarity=0.060  Sum_probs=66.5

Q ss_pred             ccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC----cccccc
Q 016620          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP----VTWKRA  227 (386)
Q Consensus       162 ~l~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  227 (386)
                      .+.|++|+|+|+.          +-...+++.| ...|++|.+|||.......  ...+.. .+  ...+    ......
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~--~~~~~~-~~--~~~~~~~~~~~~~~  399 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYL-MDEGAHLHIYDPKVPREQI--VVDLSH-PG--VSEDDQVSRLVTIS  399 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHHH--HHHHCC---------CHHHHHEEEC
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHH-HHCCCEEEEEcCccCHHHH--hhhhcc-cc--ccccccccCceeec
Confidence            4789999999986          3788899998 6899999999998543210  000000 00  0000    012223


Q ss_pred             CCHHHHhhhCCEEEEccCCChhhhhcccHH-HHhcCCCCcEEEEcCCCc
Q 016620          228 SSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGP  275 (386)
Q Consensus       228 ~~l~ell~~aDiVvl~lPlt~~t~~li~~~-~~~~mk~gailIN~aRg~  275 (386)
                      .+..+.++.+|+|++++.- ++-+. ++.+ ....|+...+++|. |+-
T Consensus       400 ~~~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~~  445 (467)
T 2q3e_A          400 KDPYEACDGAHAVVICTEW-DMFKE-LDYERIHKKMLKPAFIFDG-RRV  445 (467)
T ss_dssp             SSHHHHHTTCSEEEECSCC-GGGGG-SCHHHHHHHSCSSCEEEES-SCT
T ss_pred             CCHHHHHhCCcEEEEecCC-hhhhc-CCHHHHHHhcCCCCEEEeC-CCc
Confidence            5788899999999999985 34333 3544 44567776668885 543

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=94.41  E-value=0.051  Score=52.38  Aligned_cols=94  Identities=17%  Similarity=0.210  Sum_probs=61.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHHhhhCCEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVLREADVI  240 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~ell~~aDiV  240 (386)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.+++.......        .++.+....  ....+   +.++....|+|
T Consensus       180 ~g~~VlV~GaG~vG~~a~qla-k~~Ga~Vi~~~~~~~~~~~~--------~~~lGa~~v--i~~~~~~~~~~~~~g~D~v  248 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIA-KAMGHHVTVISSSNKKREEA--------LQDLGADDY--VIGSDQAKMSELADSLDYV  248 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSTTHHHHH--------HTTSCCSCE--EETTCHHHHHHSTTTEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeCChHHHHHH--------HHHcCCcee--eccccHHHHHHhcCCCCEE
Confidence            688999999999999999975 78999999999876442110        012232211  11122   22333457999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +-+......     -...++.++++..++.++-
T Consensus       249 id~~g~~~~-----~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          249 IDTVPVHHA-----LEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             EECCCSCCC-----SHHHHTTEEEEEEEEECSC
T ss_pred             EECCCChHH-----HHHHHHHhccCCEEEEeCC
Confidence            988864211     2456778888988888864

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=94.39  E-value=0.067  Score=50.98  Aligned_cols=102  Identities=18%  Similarity=0.339  Sum_probs=64.1

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      .+.|.+|+++|=   |++..+.+..+ ..| |++|.+..|..-...+...+    ..+..|   ..+....+++|.++++
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~eav~~a  222 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKG---IAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHH----HHHHTT---CCEEECSCGGGTTTTC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCcccccCHHHHH----HHHHcC---CeEEEEcCHHHHhcCC
Confidence            388999999998   58999999987 578 99999998754321111111    111222   1233457899999999


Q ss_pred             CEEEEccCCCh----hh------hhcccHHHHhcCCCCcEEEEc
Q 016620          238 DVISLHPVLDK----TT------YHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       238 DiVvl~lPlt~----~t------~~li~~~~~~~mk~gailIN~  271 (386)
                      |+|..-.-..+    +.      ..-++.+.++.+|++++|.-+
T Consensus       223 Dvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~  266 (310)
T 3csu_A          223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  266 (310)
T ss_dssp             SEEEECC-----------------CCBCGGGGTTCCTTCEEECC
T ss_pred             CEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECC
Confidence            99987654221    10      133566666666666666554

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.39  E-value=0.037  Score=52.93  Aligned_cols=72  Identities=15%  Similarity=0.138  Sum_probs=45.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVvl  242 (386)
                      .+|||||+|.+|+..++.+  .-++++. ++|++.....+.+.+.    .++.+   .....+.++++++++  .|+|++
T Consensus         3 ~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~ll~~~~vD~V~I   73 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKA----ISEMN---IKPKKYNNWWEMLEKEKPDILVI   73 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHH----HHTTT---CCCEECSSHHHHHHHHCCSEEEE
T ss_pred             eEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHH----HHHcC---CCCcccCCHHHHhcCCCCCEEEE
Confidence            4799999999999776654  4577766 5777652111111110    11111   112246799999975  899999


Q ss_pred             ccCC
Q 016620          243 HPVL  246 (386)
Q Consensus       243 ~lPl  246 (386)
                      |+|.
T Consensus        74 ~tp~   77 (337)
T 3ip3_A           74 NTVF   77 (337)
T ss_dssp             CSSH
T ss_pred             eCCc
Confidence            9984

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.39  E-value=0.042  Score=50.54  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEe---cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG---~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .+.||++.|.|   -|.||+++|+.|+ ..|++|+..+++...
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~-~~G~~V~~~~r~~~~   45 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQ-EQGAQLVLTGFDRLR   45 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHH-HTTCEEEEEECSCHH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHH-HCCCEEEEEecChHH
Confidence            47899999999   5999999999985 679999999987644

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=94.33  E-value=0.054  Score=52.31  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             eEEEEecChhHHHHHHHHHhc--CCcEEEEEcC
Q 016620          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~--fg~~V~~~d~  197 (386)
                      +|||+|+|.||+.+.+.|...  -+++|.+.+.
T Consensus         4 kVgI~G~G~IGr~v~r~l~~~~~~~~evvaInd   36 (339)
T 3b1j_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN   36 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSCCSEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEEec
Confidence            799999999999999987433  3578776543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=94.32  E-value=0.17  Score=44.63  Aligned_cols=71  Identities=13%  Similarity=0.111  Sum_probs=46.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC--Cccccc-cCCHHHHhhhCCEEE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKR-ASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~l~ell~~aDiVv  241 (386)
                      ++|.|.| .|.||+.+++.| ...|.+|++.+|+......         .  .+..  ...... ..++.++++.+|+|+
T Consensus         1 M~ilItGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~---------~--~~~~~~~~D~~d~~~~~~~~~~~~d~vi   68 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSL-STTDYQIYAGARKVEQVPQ---------Y--NNVKAVHFDVDWTPEEMAKQLHGMDAII   68 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHH-TTSSCEEEEEESSGGGSCC---------C--TTEEEEECCTTSCHHHHHTTTTTCSEEE
T ss_pred             CeEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCccchhh---------c--CCceEEEecccCCHHHHHHHHcCCCEEE
Confidence            4789998 699999999998 5779999999998653110         0  0000  000111 124556688899999


Q ss_pred             EccCCCh
Q 016620          242 LHPVLDK  248 (386)
Q Consensus       242 l~lPlt~  248 (386)
                      .+.....
T Consensus        69 ~~ag~~~   75 (219)
T 3dqp_A           69 NVSGSGG   75 (219)
T ss_dssp             ECCCCTT
T ss_pred             ECCcCCC
Confidence            8887654

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=94.32  E-value=0.062  Score=52.65  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             eEEEEecChhHHHHHHHHHhc--CCcEEEEEcC
Q 016620          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~--fg~~V~~~d~  197 (386)
                      +|||+|+|.||+.+++.|...  -+++|.+.+.
T Consensus         4 kVgInGfGrIGr~vlR~l~~~~~~~veIVaInd   36 (380)
T 2d2i_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN   36 (380)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHhcCCCCCEEEEEEec
Confidence            799999999999999987432  3578877654

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=94.31  E-value=0.051  Score=52.50  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=24.7

Q ss_pred             eEEEEecChhHHHHHHHHHh---cCCcEEEEEcC
Q 016620          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDL  197 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~---~fg~~V~~~d~  197 (386)
                      +|||+|+|.||+.+.+.|..   .-.++|.+.+.
T Consensus         4 kVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~   37 (339)
T 2x5j_O            4 RVAINGFGRIGRNVVRALYESGRRAEITVVAINE   37 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeC
Confidence            79999999999999998743   23678876654

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=94.31  E-value=0.047  Score=51.84  Aligned_cols=94  Identities=14%  Similarity=0.081  Sum_probs=59.6

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hh
Q 016620          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (386)
Q Consensus       164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (386)
                      .|++|.|+| .|.||...++.+ +..|++|++.+++.....  +.       ++.+..........++.+.+      ..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~-------~~~Ga~~~~~~~~~~~~~~~~~~~~~~g  209 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWA-KALGAKLIGTVSSPEKAA--HA-------KALGAWETIDYSHEDVAKRVLELTDGKK  209 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSHHHHH--HH-------HHHTCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--HH-------HHcCCCEEEeCCCccHHHHHHHHhCCCC
Confidence            688999999 799999999985 789999999998765421  11       11122111111112333322      24


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+.+...  +    .-...++.++++..++.++.
T Consensus       210 ~Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          210 CPVVYDGVGQ--D----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             EEEEEESSCG--G----GHHHHHTTEEEEEEEEECCC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhcCCCEEEEEec
Confidence            7888887763  1    12456778888888888764

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.29  E-value=0.23  Score=48.04  Aligned_cols=95  Identities=14%  Similarity=0.194  Sum_probs=56.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .+|||+|. |.+|+.+.++|..-=..++.........- ..+.+.|+ .++    ....+.. .+.++++.++|+|++|+
T Consensus        14 ~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG-~~~~~~~p-~~~----~~l~~~~-~~~~~~~~~~Dvvf~al   86 (351)
T 1vkn_A           14 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAG-KKLEEIFP-STL----ENSILSE-FDPEKVSKNCDVLFTAL   86 (351)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTT-SBHHHHCG-GGC----CCCBCBC-CCHHHHHHHCSEEEECC
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCccccc-CChHHhCh-hhc----cCceEEe-CCHHHhhcCCCEEEECC
Confidence            47999975 99999999998533345666654322110 01111111 111    1112222 35666668899999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      |....      .+....+ .|+.+||.|.-
T Consensus        87 p~~~s------~~~~~~~-~g~~VIDlSsd  109 (351)
T 1vkn_A           87 PAGAS------YDLVREL-KGVKIIDLGAD  109 (351)
T ss_dssp             STTHH------HHHHTTC-CSCEEEESSST
T ss_pred             CcHHH------HHHHHHh-CCCEEEECChh
Confidence            96432      4444555 79999999853

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.28  E-value=0.14  Score=50.96  Aligned_cols=93  Identities=20%  Similarity=0.181  Sum_probs=60.4

Q ss_pred             CCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHH-----HHHHhhhhhhhhhcCCCCccccccC
Q 016620          164 KGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRL-----EKFVTAYGQFLKANGEQPVTWKRAS  228 (386)
Q Consensus       164 ~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~  228 (386)
                      .|++|+|+|+.          +-...+++.| ...|++|.+|||......     ..|...   .....     ......
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~  382 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEYIES---KIPHV-----SSLLVS  382 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHHHHH---TSHHH-----HTTBCS
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChhhccchhhhhccc---ccccc-----cccccC
Confidence            68999999997          6788999998 689999999999743211     111000   00000     001245


Q ss_pred             CHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       229 ~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      ++.+.++.||+|++++.- ++-+.+ +   .+.|+ +.+++|+
T Consensus       383 ~~~~~~~~~d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~  419 (436)
T 1mv8_A          383 DLDEVVASSDVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL  419 (436)
T ss_dssp             CHHHHHHHCSEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred             CHHHHHhCCcEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence            788999999999999985 333222 2   34565 5788886

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=94.27  E-value=0.034  Score=50.95  Aligned_cols=38  Identities=18%  Similarity=0.132  Sum_probs=32.8

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+.|+++.|.|.   |.||+++|+.|+ ..|++|++.+|+..
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHH-HHTCEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            578999999998   699999999985 56999999988763

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=94.26  E-value=0.18  Score=48.84  Aligned_cols=98  Identities=17%  Similarity=0.154  Sum_probs=61.7

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---hhCC
Q 016620          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READ  238 (386)
Q Consensus       163 l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---~~aD  238 (386)
                      -.|++|.|+| .|.||...++.+ +..|++|++.++. .. .+ +       +++.+..........++.+.+   ...|
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla-~~~Ga~Vi~~~~~-~~-~~-~-------~~~lGa~~v~~~~~~~~~~~~~~~~g~D  250 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVM-KAWDAHVTAVCSQ-DA-SE-L-------VRKLGADDVIDYKSGSVEEQLKSLKPFD  250 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECG-GG-HH-H-------HHHTTCSEEEETTSSCHHHHHHTSCCBS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEeCh-HH-HH-H-------HHHcCCCEEEECCchHHHHHHhhcCCCC
Confidence            3688999999 799999999985 7899999988743 22 11 1       122232211111112343333   3589


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      +|+-+......+    -...+..++++..++.++...
T Consensus       251 ~vid~~g~~~~~----~~~~~~~l~~~G~iv~~g~~~  283 (375)
T 2vn8_A          251 FILDNVGGSTET----WAPDFLKKWSGATYVTLVTPF  283 (375)
T ss_dssp             EEEESSCTTHHH----HGGGGBCSSSCCEEEESCCSH
T ss_pred             EEEECCCChhhh----hHHHHHhhcCCcEEEEeCCCc
Confidence            999998753111    134567789999999998643

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=94.23  E-value=0.32  Score=48.21  Aligned_cols=113  Identities=19%  Similarity=0.163  Sum_probs=70.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCC---------hhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      .++.|++|.|.|+|++|+..|+.| ...|++|+ +.|.+         ....+.+..+..      ......   .. +-
T Consensus       214 ~~l~gk~vaVqG~GnVG~~~a~~L-~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~------g~v~~~---~~-~~  282 (419)
T 3aoe_E          214 LDLRGARVVVQGLGQVGAAVALHA-ERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEAT------GSLPRL---DL-AP  282 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHH------SSCSCC---CB-CT
T ss_pred             CCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhh------CCccee---ec-cc
Confidence            468999999999999999999998 57899998 55552         111222211110      000000   01 11


Q ss_pred             HHH-hhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       231 ~el-l~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      +++ -..||+++-|..     .+.|+.+....++ -.+++..+-+.+- .++ .+.|.+..+.
T Consensus       283 ~e~~~~~~DVliP~A~-----~n~i~~~~A~~l~-ak~V~EgAN~p~t-~~A-~~~L~~~Gi~  337 (419)
T 3aoe_E          283 EEVFGLEAEVLVLAAR-----EGALDGDRARQVQ-AQAVVEVANFGLN-PEA-EAYLLGKGAL  337 (419)
T ss_dssp             TTGGGSSCSEEEECSC-----TTCBCHHHHTTCC-CSEEEECSTTCBC-HHH-HHHHHHHTCE
T ss_pred             hhhhccCceEEEeccc-----ccccccchHhhCC-ceEEEECCCCcCC-HHH-HHHHHHCCCE
Confidence            222 247999998864     5567777777775 3499999998874 333 3455555443

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=94.21  E-value=0.076  Score=49.18  Aligned_cols=40  Identities=23%  Similarity=0.152  Sum_probs=33.5

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ..+.|+++.|.|. |.||+++|+.|+ ..|++|++.+++...
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTE   65 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchH
Confidence            4578999999875 899999999985 679999999887643

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=94.21  E-value=0.041  Score=54.58  Aligned_cols=39  Identities=21%  Similarity=0.452  Sum_probs=34.5

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      -+.|++|+|+|-|.+|+.+++.+ +.+|.+|+++|+++..
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa-~~lG~~v~v~d~~~~~   70 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAA-QSMGYRVAVLDPDPAS   70 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCcC
Confidence            46899999999999999999985 7899999999987543

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=94.21  E-value=0.077  Score=53.11  Aligned_cols=108  Identities=13%  Similarity=0.169  Sum_probs=62.6

Q ss_pred             CeEEEEecChhHHHHHHHHHh---------cCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVE---------GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~---------~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (386)
                      .+|||+|+|.||+.+++.+.+         +.+.+|. ++|++.... ..+.          .  .  ...+.++++++.
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~-~~~~----------~--~--~~~~~d~~ell~   75 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKA-EALA----------G--G--LPLTTNPFDVVD   75 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHH-HHHH----------T--T--CCEESCTHHHHT
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHh-hhhc----------c--c--CcccCCHHHHhc
Confidence            479999999999999876531         2566755 456655432 1110          0  0  123468899986


Q ss_pred             --hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCcc
Q 016620          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMF  292 (386)
Q Consensus       236 --~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~aL~~g~i~  292 (386)
                        +.|+|+.++|....-..++    ...++.|.-++..-=+.. -+-+.|.++.++....
T Consensus        76 d~diDvVve~tp~~~~h~~~~----~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           76 DPEIDIVVELIGGLEPARELV----MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             CTTCCEEEECCCSSTTHHHHH----HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             CCCCCEEEEcCCCchHHHHHH----HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence              5799999999532222222    233455554443322222 2336778777765443

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.21  E-value=0.065  Score=50.75  Aligned_cols=94  Identities=14%  Similarity=0.113  Sum_probs=56.7

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-Hh-----hh
Q 016620          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VL-----RE  236 (386)
Q Consensus       164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll-----~~  236 (386)
                      .|++|.|.| .|.||..+++.+ +..|++|++.+++......  .       ++.+..........++.+ +.     ..
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~V~~~~~~~~~~~~--~-------~~~g~~~~~~~~~~~~~~~~~~~~~~~~  209 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGTAQKAQS--A-------LKAGAWQVINYREEDLVERLKEITGGKK  209 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESSHHHHHH--H-------HHHTCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHH--H-------HHcCCCEEEECCCccHHHHHHHHhCCCC
Confidence            588999999 799999999986 6889999999987543211  1       111111100001122222 21     13


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+.+..  .++    -...++.++++..++.++.
T Consensus       210 ~D~vi~~~g--~~~----~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          210 VRVVYDSVG--RDT----WERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             EEEEEECSC--GGG----HHHHHHTEEEEEEEEECCC
T ss_pred             ceEEEECCc--hHH----HHHHHHHhcCCCEEEEEec
Confidence            678877775  221    2456677777777777754

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=94.20  E-value=0.038  Score=52.79  Aligned_cols=95  Identities=15%  Similarity=0.075  Sum_probs=59.3

Q ss_pred             cCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------h
Q 016620          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  235 (386)
Q Consensus       163 l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~  235 (386)
                      -.|++|.|+|.| .||...++.+ +..|++|++.+++.....  +       +++.+..........++.+.+      .
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~-------~~~lga~~~~~~~~~~~~~~~~~~~~~~  212 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNNKHTE--E-------LLRLGAAYVIDTSTAPLYETVMELTNGI  212 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSSTTHH--H-------HHHHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHH--H-------HHhCCCcEEEeCCcccHHHHHHHHhCCC
Confidence            368899999998 9999999985 789999999998765421  1       111122111111112333322      1


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ..|+|+.+... +.+     .+.+..++++..++.++-
T Consensus       213 g~Dvvid~~g~-~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          213 GADAAIDSIGG-PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             CEEEEEESSCH-HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             CCcEEEECCCC-hhH-----HHHHHHhcCCCEEEEEee
Confidence            47888887763 221     234567888888888864

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=94.19  E-value=0.055  Score=49.57  Aligned_cols=36  Identities=25%  Similarity=0.159  Sum_probs=30.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      .+.||++.|.|. |.||+++|+.|+ .-|++|+..+++
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~   41 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFA-QEGANVVLTYNG   41 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECS
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCC
Confidence            588999999986 789999999985 679999988433

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=94.17  E-value=0.083  Score=50.36  Aligned_cols=69  Identities=13%  Similarity=0.198  Sum_probs=43.3

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEE-EEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----hCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~aD  238 (386)
                      .+|||||+|.||+.+++.+.+ .-++++ .++|+++......+.+       ..+..    ....+.+++++     +.|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~-------~~g~~----~~~~~~e~ll~~~~~~~iD   73 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQ-------RMGVT----TTYAGVEGLIKLPEFADID   73 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHH-------HTTCC----EESSHHHHHHHSGGGGGEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHH-------HcCCC----cccCCHHHHHhccCCCCCc
Confidence            479999999999999998744 346764 4567765431111111       11111    01245677754     579


Q ss_pred             EEEEccC
Q 016620          239 VISLHPV  245 (386)
Q Consensus       239 iVvl~lP  245 (386)
                      +|+.|+|
T Consensus        74 vV~~atp   80 (312)
T 1nvm_B           74 FVFDATS   80 (312)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999999

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=94.13  E-value=0.073  Score=43.63  Aligned_cols=99  Identities=14%  Similarity=0.096  Sum_probs=65.3

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~----G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ++|.|||.    |..|..+.+.| +..|.+|+..+|.....                 .  +...+.++.++-. -|+++
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L-~~~g~~V~pVnP~~~~i-----------------~--G~~~y~sl~dlp~-vDlav   63 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERL-KSHGHEFIPVGRKKGEV-----------------L--GKTIINERPVIEG-VDTVT   63 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHH-HHHTCCEEEESSSCSEE-----------------T--TEECBCSCCCCTT-CCEEE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHH-HHCCCeEEEECCCCCcC-----------------C--CeeccCChHHCCC-CCEEE
Confidence            57999998    57899999998 56788999999865321                 1  1223456767666 89999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      +++|- +.+..++ ++..+ +...+++++.+-    .++++.+.+++..+.
T Consensus        64 i~~p~-~~v~~~v-~e~~~-~g~k~v~~~~G~----~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           64 LYINP-QNQLSEY-NYILS-LKPKRVIFNPGT----ENEELEEILSENGIE  107 (122)
T ss_dssp             ECSCH-HHHGGGH-HHHHH-HCCSEEEECTTC----CCHHHHHHHHHTTCE
T ss_pred             EEeCH-HHHHHHH-HHHHh-cCCCEEEECCCC----ChHHHHHHHHHcCCe
Confidence            99994 3344444 33333 334466665432    356777777776554

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.12  E-value=0.19  Score=47.25  Aligned_cols=112  Identities=14%  Similarity=0.135  Sum_probs=72.6

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .+.|++|.|+|-.......++.| ...|.+|.++.-....                 ....+.....++.+.++++|+|+
T Consensus         4 ~~~~mki~v~~~~~~~~~~~~~L-~~~g~~v~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~~~d~ii   65 (300)
T 2rir_A            4 MLTGLKIAVIGGDARQLEIIRKL-TEQQADIYLVGFDQLD-----------------HGFTGAVKCNIDEIPFQQIDSII   65 (300)
T ss_dssp             CCCSCEEEEESBCHHHHHHHHHH-HHTTCEEEEESCTTSS-----------------CCCTTEEECCGGGSCGGGCSEEE
T ss_pred             cccCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeccccc-----------------cccccceeccchHHHHhcCCEEE
Confidence            36788999999999999999988 5788998876421110                 00011112345667788999998


Q ss_pred             EccCCCh----------hhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016620          242 LHPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (386)
Q Consensus       242 l~lPlt~----------~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaal  296 (386)
                      ...|...          .+...++++.++.++++.+++ ++    +|..++.+++.+..+.-...
T Consensus        66 ~~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~v~~~  125 (300)
T 2rir_A           66 LPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRKLVKL  125 (300)
T ss_dssp             CCSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCCEEEG
T ss_pred             eccccccCCcccccccccCCccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCEEEee
Confidence            7544321          123347889999999988877 32    26677556666555555443

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.12  E-value=0.16  Score=50.83  Aligned_cols=90  Identities=16%  Similarity=0.191  Sum_probs=62.2

Q ss_pred             cccCCCeEEEEecC----------hhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       161 ~~l~g~~vgIvG~G----------~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      ..+.|++|+|+|+.          +-...+++.| +..|++|.+|||.........   +          +.......++
T Consensus       329 ~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L-~~~Ga~V~~~DP~~~~~~~~~---~----------~~~~~~~~~~  394 (444)
T 3vtf_A          329 GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLL-LERGARVYVHDPMAMEKARAV---L----------GDSVTYVEDP  394 (444)
T ss_dssp             TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECSSTHHHHHHH---H----------GGGSEECSCH
T ss_pred             cccCCCEEEEEeeecCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChHHHHh---c----------CCCceecCCH
Confidence            35899999999985          2377889988 689999999999864432211   1          0112345789


Q ss_pred             HHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       231 ~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      +++++++|.|+++++- ++-+.+ +      + ++.+++|. |+
T Consensus       395 ~~a~~~aDavvi~t~h-~ef~~l-d------~-~~~vv~D~-Rn  428 (444)
T 3vtf_A          395 QALLDQVEGVIIATAW-PQYEGL-D------Y-RGKVVVDG-RY  428 (444)
T ss_dssp             HHHHHHCSEEEECSCC-GGGGGS-C------C-TTCEEEES-SC
T ss_pred             HHHHhCCCEEEEccCC-HHHhCC-C------c-CCCEEEEC-CC
Confidence            9999999999999975 232222 1      2 36688884 53

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=94.12  E-value=0.25  Score=49.03  Aligned_cols=119  Identities=18%  Similarity=0.272  Sum_probs=68.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCC---------hhhHHHHHHhhhhh--h--hhhcCCCCccccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY---------QATRLEKFVTAYGQ--F--LKANGEQPVTWKR  226 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~---------~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~  226 (386)
                      .++.|++|.|.|+|++|+.+|+.| ...|++|+. .|.+         ....+.++.+....  .  ....+.    ...
T Consensus       206 ~~l~gk~vaVqG~GnVG~~aa~~L-~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~----~~~  280 (421)
T 1v9l_A          206 GGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDN----AEF  280 (421)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSC----CCC
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccC----ceE
Confidence            479999999999999999999998 589999984 4441         11111111100000  0  000000    001


Q ss_pred             cCCHHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       227 ~~~l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ..+.++++ ..||+++-|.-     .+.|+.+....++ -.+++-.+-+++- .++ .+.|.+..+.
T Consensus       281 ~~~~~~~~~~~~Dil~P~A~-----~~~I~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          281 VKNPDAIFKLDVDIFVPAAI-----ENVIRGDNAGLVK-ARLVVEGANGPTT-PEA-ERILYERGVV  339 (421)
T ss_dssp             CSSTTGGGGCCCSEEEECSC-----SSCBCTTTTTTCC-CSEEECCSSSCBC-HHH-HHHHHTTTCE
T ss_pred             eCCchhhhcCCccEEEecCc-----CCccchhhHHHcC-ceEEEecCCCcCC-HHH-HHHHHHCCCE
Confidence            10223333 47999988873     4456666666664 3488888888864 333 3556665543

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=94.10  E-value=0.6  Score=44.26  Aligned_cols=75  Identities=16%  Similarity=0.332  Sum_probs=51.0

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      .+.|.+|+++|=   |++..+.+..+ ..| |++|.+..|..-...+...+.    .+..+   ..+....+++|.++++
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~~G~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~eav~~a  219 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYAL-SLFENVEMYFVSPKELRLPKDIIED----LKAKN---IKFYEKESLDDLDDDI  219 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHHH----HHHTT---CCEEEESCGGGCCTTC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHH-HhcCCCEEEEECCcccccCHHHHHH----HHHcC---CEEEEEcCHHHHhcCC
Confidence            378999999997   58999999987 579 999999987532111111110    11111   2233457899999999


Q ss_pred             CEEEEcc
Q 016620          238 DVISLHP  244 (386)
Q Consensus       238 DiVvl~l  244 (386)
                      |+|....
T Consensus       220 Dvvy~~~  226 (306)
T 4ekn_B          220 DVLYVTR  226 (306)
T ss_dssp             SEEEECC
T ss_pred             CEEEeCC
Confidence            9998754

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=94.07  E-value=0.048  Score=50.00  Aligned_cols=37  Identities=22%  Similarity=0.193  Sum_probs=32.3

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      .+.|+++.|.|.   |.||+++|+.|+ ..|++|+..+|+.
T Consensus         6 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~   45 (265)
T 1qsg_A            6 FLSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQND   45 (265)
T ss_dssp             TTTTCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESST
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEEcCcH
Confidence            378999999997   699999999985 6799999998875

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.04  E-value=0.047  Score=53.39  Aligned_cols=67  Identities=18%  Similarity=0.223  Sum_probs=45.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC--CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~f--g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .+|||+|.| +|+.-++.+ +..  ++++. ++|++... .+++.+.|       +.     ..+.++++++++.|+|++
T Consensus         8 ~rv~VvG~G-~g~~h~~a~-~~~~~~~elvav~~~~~~~-a~~~a~~~-------gv-----~~~~~~~~l~~~~D~v~i   72 (372)
T 4gmf_A            8 QRVLIVGAK-FGEMYLNAF-MQPPEGLELVGLLAQGSAR-SRELAHAF-------GI-----PLYTSPEQITGMPDIACI   72 (372)
T ss_dssp             EEEEEECST-TTHHHHHTT-SSCCTTEEEEEEECCSSHH-HHHHHHHT-------TC-----CEESSGGGCCSCCSEEEE
T ss_pred             CEEEEEehH-HHHHHHHHH-HhCCCCeEEEEEECCCHHH-HHHHHHHh-------CC-----CEECCHHHHhcCCCEEEE
Confidence            579999999 799877765 333  67866 56877643 22322222       21     235789999999999999


Q ss_pred             ccCCC
Q 016620          243 HPVLD  247 (386)
Q Consensus       243 ~lPlt  247 (386)
                      ++|..
T Consensus        73 ~~p~~   77 (372)
T 4gmf_A           73 VVRST   77 (372)
T ss_dssp             CCC--
T ss_pred             ECCCc
Confidence            99864

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=94.03  E-value=0.074  Score=50.61  Aligned_cols=67  Identities=19%  Similarity=0.263  Sum_probs=45.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh---------
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell---------  234 (386)
                      .++||||+ |.||+..++.+ +..+.++. ++|++....  .+        ...  .+ ....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~--------~~~--~~-~~~~~~~~~~ll~~~~~l~~~   69 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSVG--II--------DSI--SP-QSEFFTEFEFFLDHASNLKRD   69 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GG--------GGT--CT-TCEEESSHHHHHHHHHHHTTS
T ss_pred             eEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HH--------Hhh--CC-CCcEECCHHHHHHhhhhhhhc
Confidence            47999999 78999999987 45688754 667765431  10        000  11 123457888887         


Q ss_pred             --hhCCEEEEccCC
Q 016620          235 --READVISLHPVL  246 (386)
Q Consensus       235 --~~aDiVvl~lPl  246 (386)
                        .+.|+|++|+|.
T Consensus        70 ~~~~vD~V~I~tP~   83 (318)
T 3oa2_A           70 SATALDYVSICSPN   83 (318)
T ss_dssp             TTTSCCEEEECSCG
T ss_pred             cCCCCcEEEECCCc
Confidence              568999999995

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=94.00  E-value=0.041  Score=52.65  Aligned_cols=95  Identities=13%  Similarity=0.105  Sum_probs=56.4

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcC--CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccccc-CC-HHHHhh--hC
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA-SS-MDEVLR--EA  237 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~f--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-l~ell~--~a  237 (386)
                      .|.+|.|+|.|.||...++.+ +.+  |++|++.+++.....  +       +++.+......... .+ .+++..  ..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqla-k~~~~Ga~Vi~~~~~~~~~~--~-------~~~lGa~~vi~~~~~~~~~~~~~~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQIL-KALMKNITIVGISRSKKHRD--F-------ALELGADYVSEMKDAESLINKLTDGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHH-HHHCTTCEEEEECSCHHHHH--H-------HHHHTCSEEECHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHhcCCCEEEEEeCCHHHHH--H-------HHHhCCCEEeccccchHHHHHhhcCCCc
Confidence            788999999999999999975 788  999999998764421  1       11112211100000 01 112211  46


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+|+-+... +.+    -...++.++++..++.++.
T Consensus       240 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          240 SIAIDLVGT-EET----TYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             EEEEESSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             cEEEECCCC-hHH----HHHHHHHhhcCCEEEEeCC
Confidence            888877763 111    1445666777777777653

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=93.96  E-value=0.13  Score=48.55  Aligned_cols=112  Identities=14%  Similarity=0.178  Sum_probs=59.7

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.||+.+|-.|+ ++.--++..||.......-.-.+..+... ..... .......+. +.++.||+|+++.
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~-~~~~~-~~i~~~~d~-~~~~~aDvVvitA   77 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAA-GIDKY-PKIVGGADY-SLLKGSEIIVVTA   77 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHG-GGTCC-CEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccc-cCCCC-CeEecCCCH-HHhCCCCEEEEec
Confidence            57999999999999997653 34545899999876432211122110000 00101 111112233 5689999999986


Q ss_pred             --CCCh-hhhh-cc--cH-------HHHhcCCCCcEEEEcCCCcccCHHHH
Q 016620          245 --VLDK-TTYH-LI--NK-------ERLATMKKEAILVNCSRGPVIDEVAL  282 (386)
Q Consensus       245 --Plt~-~t~~-li--~~-------~~~~~mk~gailIN~aRg~~vde~aL  282 (386)
                        |..| .|+. ++  |.       +.+..-.|.++++.++-  .+|.-..
T Consensus        78 G~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN--Pvd~~t~  126 (294)
T 2x0j_A           78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMTY  126 (294)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHHH
T ss_pred             CCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC--cchhhHH
Confidence              3333 2321 21  11       12333456778877754  3444333

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=93.95  E-value=0.12  Score=49.41  Aligned_cols=95  Identities=14%  Similarity=0.130  Sum_probs=59.4

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH----Hhh--
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLR--  235 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e----ll~--  235 (386)
                      -.|.+|.|+|.|.+|...++.+ +.. |.+|++.+++.....  +       .++.+....... ..++.+    +..  
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla-~~~g~~~Vi~~~~~~~~~~--~-------~~~lGa~~~i~~-~~~~~~~v~~~t~g~  238 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQIL-RAVSAARVIAVDLDDDRLA--L-------AREVGADAAVKS-GAGAADAIRELTGGQ  238 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESCHHHHH--H-------HHHTTCSEEEEC-STTHHHHHHHHHGGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHHH--H-------HHHcCCCEEEcC-CCcHHHHHHHHhCCC
Confidence            3588999999999999999875 666 789999998765421  1       222232221111 113322    222  


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ..|+|+-+.... .+    -...++.++++..++.++-
T Consensus       239 g~d~v~d~~G~~-~~----~~~~~~~l~~~G~iv~~G~  271 (345)
T 3jv7_A          239 GATAVFDFVGAQ-ST----IDTAQQVVAVDGHISVVGI  271 (345)
T ss_dssp             CEEEEEESSCCH-HH----HHHHHHHEEEEEEEEECSC
T ss_pred             CCeEEEECCCCH-HH----HHHHHHHHhcCCEEEEECC
Confidence            589999888742 11    1445666777777777753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.94  E-value=0.089  Score=52.87  Aligned_cols=72  Identities=19%  Similarity=0.276  Sum_probs=47.5

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiV  240 (386)
                      .++|-|+|+|.+|+.+|+.| ..-|.+|.+.|.++... +...+.+       +.. .......+   |+++ +++||.+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L-~~~~~~v~vId~d~~~~-~~~~~~~-------~~~-~i~Gd~~~~~~L~~Agi~~ad~~   72 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENL-VGENNDITIVDKDGDRL-RELQDKY-------DLR-VVNGHASHPDVLHEAGAQDADML   72 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHT-CSTTEEEEEEESCHHHH-HHHHHHS-------SCE-EEESCTTCHHHHHHHTTTTCSEE
T ss_pred             cCEEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HHHHHhc-------CcE-EEEEcCCCHHHHHhcCCCcCCEE
Confidence            56899999999999999998 68899999999886542 1111111       110 00111222   3443 6889999


Q ss_pred             EEccCC
Q 016620          241 SLHPVL  246 (386)
Q Consensus       241 vl~lPl  246 (386)
                      +.+++.
T Consensus        73 ia~t~~   78 (461)
T 4g65_A           73 VAVTNT   78 (461)
T ss_dssp             EECCSC
T ss_pred             EEEcCC
Confidence            888875

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=93.93  E-value=0.11  Score=49.38  Aligned_cols=36  Identities=19%  Similarity=0.044  Sum_probs=29.4

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ...++|.|.|. |.||+.+++.|. ..|.+|++.+|+.
T Consensus         8 M~~~~IlVtGatG~iG~~l~~~L~-~~g~~V~~l~R~~   44 (346)
T 3i6i_A            8 SPKGRVLIAGATGFIGQFVATASL-DAHRPTYILARPG   44 (346)
T ss_dssp             ---CCEEEECTTSHHHHHHHHHHH-HTTCCEEEEECSS
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHH-HCCCCEEEEECCC
Confidence            34678999998 999999999984 6789999999875

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=93.91  E-value=0.096  Score=50.02  Aligned_cols=37  Identities=19%  Similarity=0.166  Sum_probs=32.6

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++...
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a-~~~G~~Vi~~~~~~~~  203 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIA-KLFGARVIATAGSEDK  203 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            5889999999 99999999986 7899999999987543

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=93.90  E-value=0.05  Score=51.95  Aligned_cols=90  Identities=9%  Similarity=0.135  Sum_probs=57.1

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccC---CHHHH-hhhCCEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEV-LREADVI  240 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~el-l~~aDiV  240 (386)
                      .+++.|+|+|.+|+.+++.| ...|. |.+.|++++...  .        +..+. ........   .|+++ +++||.|
T Consensus       115 ~~~viI~G~G~~g~~l~~~L-~~~g~-v~vid~~~~~~~--~--------~~~~~-~~i~gd~~~~~~L~~a~i~~a~~v  181 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRKK--V--------LRSGA-NFVHGDPTRVSDLEKANVRGARAV  181 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTG-GGSCE-EEEESCGGGHHH--H--------HHTTC-EEEESCTTSHHHHHHTCSTTEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHH-HhCCc-EEEEeCChhhhh--H--------HhCCc-EEEEeCCCCHHHHHhcChhhccEE
Confidence            56899999999999999997 67888 999998765421  1        11111 11111122   23344 6789999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEE
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILV  269 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailI  269 (386)
                      +++++.+  ..++.-....+.+.+...++
T Consensus       182 i~~~~~d--~~n~~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          182 IVDLESD--SETIHCILGIRKIDESVRII  208 (336)
T ss_dssp             EECCSSH--HHHHHHHHHHHTTCTTSEEE
T ss_pred             EEcCCcc--HHHHHHHHHHHHHCCCCeEE
Confidence            9999853  34444456667777764443

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.84  E-value=0.29  Score=49.35  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=69.6

Q ss_pred             ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCCccccccCC
Q 016620          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASS  229 (386)
Q Consensus       162 ~l~g~~vgIvG~----------G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (386)
                      .+.|++|+|+|+          .+-...+++.| ...|++|.+|||......  ..+...++.....     .......+
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~  405 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHL-MEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVE-----RLITVESD  405 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHH-----HHEEEESS
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHH-HHCCCEEEEECCCCCchhhHHHHHhhhcccccc-----CceeecCC
Confidence            479999999997          35778899988 688999999999864321  1110000000000     00112357


Q ss_pred             HHHHhhhCCEEEEccCCChhhhhcccHH-HHhcCCCCcEEEEcCCCcccCHHHH
Q 016620          230 MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVAL  282 (386)
Q Consensus       230 l~ell~~aDiVvl~lPlt~~t~~li~~~-~~~~mk~gailIN~aRg~~vde~aL  282 (386)
                      +.+.++.+|.|++++.- ++-+. ++-+ ..+.|+...+++|. |+ +.|.+.+
T Consensus       406 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          406 PYAAARGAHAIVVLTEW-DEFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             HHHHHcCCCEEEEcCCc-HHhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            78899999999999985 33333 3444 44567776688886 54 4565543

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=93.84  E-value=0.073  Score=50.78  Aligned_cols=94  Identities=18%  Similarity=0.140  Sum_probs=59.2

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh-hcCCCCccc-cccCCHHHHhh-----
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTW-KRASSMDEVLR-----  235 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~ell~-----  235 (386)
                      .|++|.|+|. |.||..+++.+ +..|++|++.+++......         ++ ..+...... ....++.+.+.     
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a-~~~G~~V~~~~~~~~~~~~---------~~~~~g~~~~~d~~~~~~~~~~~~~~~~~  224 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLA-KMMGCYVVGSAGSKEKVDL---------LKTKFGFDDAFNYKEESDLTAALKRCFPN  224 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHH---------HHHTSCCSEEEETTSCSCSHHHHHHHCTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---------HHHHcCCceEEecCCHHHHHHHHHHHhCC
Confidence            6889999997 99999999986 7899999999987643211         11 112211100 01123333332     


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ..|+|+.+...  .    .-...++.++++..++.++-
T Consensus       225 ~~d~vi~~~g~--~----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          225 GIDIYFENVGG--K----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             CEEEEEESSCH--H----HHHHHHTTEEEEEEEEECCC
T ss_pred             CCcEEEECCCH--H----HHHHHHHHHhcCCEEEEEcc
Confidence            47888887752  1    12556777888888887754

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=93.79  E-value=0.27  Score=47.19  Aligned_cols=95  Identities=18%  Similarity=0.124  Sum_probs=60.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccc-----cCCHHHHh---
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-----ASSMDEVL---  234 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~ell---  234 (386)
                      .|.+|.|+|.|.+|...++.+ +.+|++ |++.+++.....  +.       ++. ........     ..++.+.+   
T Consensus       179 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~a-------~~l-~~~~~~~~~~~~~~~~~~~~v~~~  247 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCA-KAAGACPLVITDIDEGRLK--FA-------KEI-CPEVVTHKVERLSAEESAKKIVES  247 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEEESCHHHHH--HH-------HHH-CTTCEEEECCSCCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHHH--HH-------HHh-chhcccccccccchHHHHHHHHHH
Confidence            578999999999999999985 899998 898887765421  11       111 10100000     01222222   


Q ss_pred             ---hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          235 ---READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       235 ---~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                         ...|+|+-+... +.+    -...++.++++..++.++-.
T Consensus       248 t~g~g~Dvvid~~g~-~~~----~~~~~~~l~~~G~iv~~G~~  285 (363)
T 3m6i_A          248 FGGIEPAVALECTGV-ESS----IAAAIWAVKFGGKVFVIGVG  285 (363)
T ss_dssp             TSSCCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECCCC
T ss_pred             hCCCCCCEEEECCCC-hHH----HHHHHHHhcCCCEEEEEccC
Confidence               258999998873 211    14567789999999988753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.76  E-value=0.11  Score=49.84  Aligned_cols=37  Identities=27%  Similarity=0.483  Sum_probs=32.7

Q ss_pred             CCCeEEEE-ecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIv-G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|++|.|+ |.|.||...++.+ +.+|++|++.+++...
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~  187 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIA-KAYGLRVITTASRNET  187 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEECCSHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            68999999 7999999999985 7999999999987644

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=93.72  E-value=0.09  Score=51.11  Aligned_cols=37  Identities=24%  Similarity=0.248  Sum_probs=32.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCC-cEEEEEcCChhh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg-~~V~~~d~~~~~  201 (386)
                      .|.+|.|+|.|.+|...++.+ +.+| .+|++.+++...
T Consensus       195 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~  232 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNR  232 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHH-HHcCCceEEEEcCCHHH
Confidence            578999999999999999985 7899 599999987654

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=93.71  E-value=0.17  Score=48.38  Aligned_cols=92  Identities=14%  Similarity=0.086  Sum_probs=59.1

Q ss_pred             CeEEEE-ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hhCC
Q 016620          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------READ  238 (386)
Q Consensus       166 ~~vgIv-G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~aD  238 (386)
                      ++|.|. |.|.||...++.+ +.+|++|++.+++.....  +       +++.+..........++.+.+      ...|
T Consensus       166 ~~vli~gg~g~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~--~-------~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D  235 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLA-KEEGFRPIVTVRRDEQIA--L-------LKDIGAAHVLNEKAPDFEATLREVMKAEQPR  235 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESCGGGHH--H-------HHHHTCSEEEETTSTTHHHHHHHHHHHHCCC
T ss_pred             CEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH--H-------HHHcCCCEEEECCcHHHHHHHHHHhcCCCCc
Confidence            567665 8999999999985 789999999998665421  1       112222211111123333332      2589


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|+-|... +   . + ...+..++++..++.++.
T Consensus       236 ~vid~~g~-~---~-~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          236 IFLDAVTG-P---L-A-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             EEEESSCH-H---H-H-HHHHHHSCTTCEEEECCC
T ss_pred             EEEECCCC-h---h-H-HHHHhhhcCCCEEEEEec
Confidence            99988863 1   1 1 567888999999999874

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=93.70  E-value=0.14  Score=47.97  Aligned_cols=82  Identities=15%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC---CccccccCCHHHHhhhC
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMDEVLREA  237 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~ell~~a  237 (386)
                      .+.|++|.|.|. |-||+.+++.|+ ..|.+|++.+|+..... .....+.. .......   ........+++++++.+
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~-~~g~~V~~~~r~~~~~~-~~~~~~~~-~~~~~~~~~~~~D~~d~~~~~~~~~~~   84 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLL-EHGYKVRGTARSASKLA-NLQKRWDA-KYPGRFETAVVEDMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHH-HHHHHHHH-HSTTTEEEEECSCTTSTTTTTTTTTTC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHH-HCCCEEEEEeCCcccHH-HHHHHhhc-cCCCceEEEEecCCcChHHHHHHHcCC
Confidence            468899999998 999999999984 67999999998764321 10000000 0000000   00111234566777889


Q ss_pred             CEEEEccCC
Q 016620          238 DVISLHPVL  246 (386)
Q Consensus       238 DiVvl~lPl  246 (386)
                      |+|+.+...
T Consensus        85 d~vih~A~~   93 (342)
T 1y1p_A           85 AGVAHIASV   93 (342)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeCCC
Confidence            999887654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=93.70  E-value=0.086  Score=48.91  Aligned_cols=41  Identities=20%  Similarity=0.195  Sum_probs=35.1

Q ss_pred             ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       160 g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ..++.||++.|.|. |.||+++|+.|+ ..|++|++.+++...
T Consensus        22 ~~~l~~k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~~   63 (277)
T 4dqx_A           22 SMDLNQRVCIVTGGGSGIGRATAELFA-KNGAYVVVADVNEDA   63 (277)
T ss_dssp             CCTTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHH
T ss_pred             cCCCCCCEEEEECCCcHHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            35689999999986 789999999985 789999999987654

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=93.67  E-value=0.15  Score=51.08  Aligned_cols=121  Identities=17%  Similarity=0.142  Sum_probs=64.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhh-hh-----------hhhhcCCCCccccccCCHHH
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAY-GQ-----------FLKANGEQPVTWKRASSMDE  232 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~-~~-----------~~~~~~~~~~~~~~~~~l~e  232 (386)
                      .+|||||+|.||+.+++.+.+.-++++. ++|++..... .+.+.+ +.           .+..... ......+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~-~~a~~~yG~~~~~~~~~~~~~i~~a~~-~g~~~v~~D~ee  101 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTF-KAIRTAYGDEENAREATTESAMTRAIE-AGKIAVTDDNDL  101 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHH-HHHHHHHSSSTTEEECSSHHHHHHHHH-TTCEEEESCHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHH-HHHHHhcCCccccccccchhhhhhhhc-cCCceEECCHHH
Confidence            4699999999999999887444577755 5677665432 221111 10           0000000 001223578999


Q ss_pred             Hhh--hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEE--EcCCCcccCHHHHHHHHHcCCcce
Q 016620          233 VLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILV--NCSRGPVIDEVALVEHLKQNPMFR  293 (386)
Q Consensus       233 ll~--~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailI--N~aRg~~vde~aL~~aL~~g~i~g  293 (386)
                      +++  +.|+|++++|.. ....   +-.+..++.|.-++  |.+- ...+-+.|.++.++..+.-
T Consensus       102 LL~d~dIDaVviaTp~p-~~H~---e~a~~AL~AGKHVv~~nk~l-~~~eg~eL~~~A~e~Gvvl  161 (446)
T 3upl_A          102 ILSNPLIDVIIDATGIP-EVGA---ETGIAAIRNGKHLVMMNVEA-DVTIGPYLKAQADKQGVIY  161 (446)
T ss_dssp             HHTCTTCCEEEECSCCH-HHHH---HHHHHHHHTTCEEEECCHHH-HHHHHHHHHHHHHHHTCCE
T ss_pred             HhcCCCCCEEEEcCCCh-HHHH---HHHHHHHHcCCcEEecCccc-CHHHHHHHHHHHHHhCCee
Confidence            997  489999999853 2211   11223344444333  4321 1223356677666654443

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=93.65  E-value=0.12  Score=48.35  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=33.7

Q ss_pred             cccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       159 ~g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      +...+.||++.|.|. |.||+++|+.|+ ..|++|++.|++
T Consensus        22 m~~~l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~   61 (299)
T 3t7c_A           22 MAGKVEGKVAFITGAARGQGRSHAITLA-REGADIIAIDVC   61 (299)
T ss_dssp             CCCTTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEECC
T ss_pred             cccccCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEecc
Confidence            345689999999987 789999999985 789999999876

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=93.65  E-value=0.046  Score=51.14  Aligned_cols=74  Identities=20%  Similarity=0.145  Sum_probs=44.4

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|+|+|+ |.||+.+++.+...-++++. ++|+........  +    .....+..........++++++..+|+|+-+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~--d----~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDf   79 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS--D----AGELAGAGKTGVTVQSSLDAVKDDFDVFIDF   79 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC--C----TTCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhh--h----HHHHcCCCcCCceecCCHHHHhcCCCEEEEc
Confidence            58999999 99999999976545678876 667654210000  0    0000011111122245778888899999955


Q ss_pred             cC
Q 016620          244 PV  245 (386)
Q Consensus       244 lP  245 (386)
                      ++
T Consensus        80 t~   81 (273)
T 1dih_A           80 TR   81 (273)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=93.65  E-value=0.074  Score=51.32  Aligned_cols=44  Identities=25%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEE-EcCChhhHHHHHHhhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAY  210 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~-~d~~~~~~~~~~~~~~  210 (386)
                      .+|||.|||+||+.++|++ ..+|++|.+ +|+......-.+.-.|
T Consensus         8 ~kvgInGFGRIGrlv~R~~-~~~~veivainDp~~d~~~~a~l~~y   52 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRAC-MEKGVKVVAVNDPFIDPEYMVYMFKY   52 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECTTCCHHHHHHHHHC
T ss_pred             eEEEEECCChHHHHHHHHH-HhCCCEEEEEeCCCCChhHhcccccc
Confidence            4799999999999999985 678899887 6765443333343334

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=93.65  E-value=0.039  Score=50.46  Aligned_cols=36  Identities=19%  Similarity=0.071  Sum_probs=31.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      .+.|+++.|.|. |.||+++|+.|+ ..|++|++.+++
T Consensus        18 ~~~~k~vlItGasggiG~~la~~l~-~~G~~v~~~~r~   54 (274)
T 1ja9_A           18 PLAGKVALTTGAGRGIGRGIAIELG-RRGASVVVNYGS   54 (274)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESS
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEEcCC
Confidence            578999999986 899999999985 679999999883

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=93.64  E-value=0.1  Score=49.61  Aligned_cols=36  Identities=17%  Similarity=0.124  Sum_probs=31.8

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .|++|.|.|. |.||..+++.+ +..|++|++.+++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~Vi~~~~~~~  181 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWA-RHLGATVIGTVSTEE  181 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHH-HHTTCEEEEEESSHH
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            5789999995 99999999986 689999999998764

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=93.60  E-value=0.075  Score=50.24  Aligned_cols=104  Identities=15%  Similarity=0.104  Sum_probs=63.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv  241 (386)
                      .++.|+|. |.+|+.+++.+ +..|++ |...+|.....             +  .  .+...+.+++++..  ..|+++
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l-~~~g~~~V~~VnP~~~g~-------------~--i--~G~~vy~sl~el~~~~~~Dv~i   75 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKM-LECGTKIVGGVTPGKGGQ-------------N--V--HGVPVFDTVKEAVKETDANASV   75 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHH-HHTTCCEEEEECTTCTTC-------------E--E--TTEEEESSHHHHHHHHCCCEEE
T ss_pred             CEEEEECCCCCHHHHHHHHH-HhCCCeEEEEeCCCCCCc-------------e--E--CCEeeeCCHHHHhhcCCCCEEE
Confidence            34788899 99999999987 456776 44556532100             0  0  11223578999988  899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCC-cccCHHHHHHHHHcCCc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG-PVIDEVALVEHLKQNPM  291 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg-~~vde~aL~~aL~~g~i  291 (386)
                      +++|. +.+...+ ++..+ .... .+|..+.| ..-+++.|.++.++..+
T Consensus        76 i~vp~-~~~~~~v-~ea~~-~Gi~-~vVi~t~G~~~~~~~~l~~~A~~~gi  122 (294)
T 2yv1_A           76 IFVPA-PFAKDAV-FEAID-AGIE-LIVVITEHIPVHDTMEFVNYAEDVGV  122 (294)
T ss_dssp             ECCCH-HHHHHHH-HHHHH-TTCS-EEEECCSCCCHHHHHHHHHHHHHHTC
T ss_pred             EccCH-HHHHHHH-HHHHH-CCCC-EEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            99994 2233332 33333 2222 24444444 23456788888887544

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=93.59  E-value=0.043  Score=50.63  Aligned_cols=36  Identities=14%  Similarity=0.137  Sum_probs=31.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+++|.|.|.|-||+.+++.| ..-|.+|++.+|+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRL-TAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHH-HHTTCCEEEEECTTS
T ss_pred             CCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            357899999999999999998 467999999998754

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=93.51  E-value=0.34  Score=48.72  Aligned_cols=34  Identities=18%  Similarity=0.352  Sum_probs=27.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCc---EEEEEcCCh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQ  199 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~---~V~~~d~~~  199 (386)
                      ++|.|||+|.||+.+|+.|++..++   +|+..|+..
T Consensus        14 ~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~   50 (480)
T 2ph5_A           14 NRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEG   50 (480)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccch
Confidence            4599999999999999988776665   677777643

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=93.50  E-value=0.1  Score=46.58  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=48.0

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcC--CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhC
Q 016620          163 LKGQTVGVIG-AGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (386)
Q Consensus       163 l~g~~vgIvG-~G~IG~~iA~~L~~~f--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~a  237 (386)
                      ..+++|.|.| .|.||+.+++.|+ ..  |.+|++.+|+.... +.        + .......  ......+++++++.+
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~-~~~~g~~V~~~~r~~~~~-~~--------~-~~~~~~~~~D~~d~~~~~~~~~~~   70 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGK-EK--------I-GGEADVFIGDITDADSINPAFQGI   70 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHH-HTTTTCEEEEEESCHHHH-HH--------T-TCCTTEEECCTTSHHHHHHHHTTC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHH-hcCCCcEEEEEEcCCCch-hh--------c-CCCeeEEEecCCCHHHHHHHHcCC
Confidence            3578999998 5999999999985 45  89999999876432 11        0 0000000  011123566788899


Q ss_pred             CEEEEccCC
Q 016620          238 DVISLHPVL  246 (386)
Q Consensus       238 DiVvl~lPl  246 (386)
                      |+|+.+...
T Consensus        71 d~vi~~a~~   79 (253)
T 1xq6_A           71 DALVILTSA   79 (253)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeccc
Confidence            999988754

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=93.48  E-value=0.11  Score=50.40  Aligned_cols=99  Identities=15%  Similarity=0.233  Sum_probs=50.4

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEc-CChhhHHHHHHhhhhhhhhh----cCCCCccccccCCHHHHhhhCCE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKA----NGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+|||+| .|.||+.+.+.|...-.+++.+.. .+... -..+.+.|+ .+..    .+.....+.. .+.++ +..+|+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~-g~~~~~~~~-~~~~~~~~~~~~~~~~~~-~d~~~-~~~vDv   80 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKI-GKKYKDAVK-WIEQGDIPEEVQDLPIVS-TNYED-HKDVDV   80 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGT-TSBHHHHCC-CCSSSSCCHHHHTCBEEC-SSGGG-GTTCSE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhc-CCCHHHhcC-cccccccccCCceeEEee-CCHHH-hcCCCE
Confidence            5799999 899999999987432356777663 22111 001111110 0000    0000011111 13334 478999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+.|+|... +..+ -...   ++.|+.+|+.+.
T Consensus        81 Vf~atp~~~-s~~~-a~~~---~~aG~~VId~s~  109 (350)
T 2ep5_A           81 VLSALPNEL-AESI-ELEL---VKNGKIVVSNAS  109 (350)
T ss_dssp             EEECCCHHH-HHHH-HHHH---HHTTCEEEECSS
T ss_pred             EEECCChHH-HHHH-HHHH---HHCCCEEEECCc
Confidence            999999422 2222 1222   355777888764

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=93.39  E-value=0.11  Score=49.77  Aligned_cols=94  Identities=19%  Similarity=0.195  Sum_probs=58.2

Q ss_pred             CC--CeEEEEec-ChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhh-cCCCCccccccCCHHHHhh---
Q 016620          164 KG--QTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLR---  235 (386)
Q Consensus       164 ~g--~~vgIvG~-G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~ell~---  235 (386)
                      .|  ++|.|.|. |.||..+++.+ +..|+ +|++.+++......         +.+ .+..........++.+.+.   
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a-~~~Ga~~Vi~~~~~~~~~~~---------~~~~~g~~~~~d~~~~~~~~~~~~~~  227 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIG-HFLGCSRVVGICGTHEKCIL---------LTSELGFDAAINYKKDNVAEQLRESC  227 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHH-HHTTCSEEEEEESCHHHHHH---------HHHTSCCSEEEETTTSCHHHHHHHHC
T ss_pred             CCCccEEEEECCCcHHHHHHHHHH-HHCCCCeEEEEeCCHHHHHH---------HHHHcCCceEEecCchHHHHHHHHhc
Confidence            46  89999998 99999999986 78999 99999987543211         111 1211110111123333332   


Q ss_pred             --hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 --~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                        ..|+|+.+...  .    .-...++.++++..++.++.
T Consensus       228 ~~~~d~vi~~~G~--~----~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          228 PAGVDVYFDNVGG--N----ISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             TTCEEEEEESCCH--H----HHHHHHHTEEEEEEEEECCC
T ss_pred             CCCCCEEEECCCH--H----HHHHHHHHhccCcEEEEECC
Confidence              36888877752  1    12456777888888887764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=93.38  E-value=0.082  Score=49.68  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=30.9

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .|++|.|.|. |.||+.+++.|+ ..|.+|++.+|+..
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~-~~G~~V~~~~r~~~   38 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLL-EKGYEVYGADRRSG   38 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECSCCS
T ss_pred             CCCEEEEECCCChHHHHHHHHHH-HCCCEEEEEECCCc
Confidence            5789999997 999999999984 67999999998754

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=93.36  E-value=0.11  Score=48.15  Aligned_cols=38  Identities=24%  Similarity=0.236  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+.|+++.|.|. |.||+++|+.|+ ..|++|+..+|+..
T Consensus         6 ~l~~k~vlVTGas~GIG~aia~~l~-~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            6 SLRGKTMFISGGSRGIGLAIAKRVA-ADGANVALVAKSAE   44 (285)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHH-TTTCEEEEEESCCS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECChh
Confidence            588999999986 889999999985 67999999998764

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=93.35  E-value=3.2  Score=39.53  Aligned_cols=102  Identities=10%  Similarity=-0.056  Sum_probs=65.1

Q ss_pred             hhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEE-----EecChhHHHH
Q 016620          106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV-----IGAGRIGSAY  180 (386)
Q Consensus       106 ~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgI-----vG~G~IG~~i  180 (386)
                      +-.+|+|.|.-+....++  .+++=++.+.+++         |    +       ..+. .+|++     +|=+++..+.
T Consensus       132 ~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~~---------g----~-------~~l~-l~ia~a~~~~vGD~rva~Sl  188 (324)
T 1js1_X          132 QHSGRPVFSMEAATRHPL--QSFADLITIEEYK---------K----T-------ARPK-VVMTWAPHPRPLPQAVPNSF  188 (324)
T ss_dssp             HHSSSCEEESSCSSCCHH--HHHHHHHHHHHHC---------S----S-------SSCE-EEEECCCCSSCCCSHHHHHH
T ss_pred             hhCCCCEEECCCCCCCcH--HHHHHHHHHHHHc---------C----C-------CCee-EEEEEEcccccCCcchHHHH
Confidence            455799999766433322  2333334433311         1    0       1366 88999     9999999999


Q ss_pred             HHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       181 A~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      +..+ ..||++|.+..|..-...+..        .      ..+....+++|+++++|+|..-.-
T Consensus       189 ~~~~-~~~G~~v~~~~P~~~~~~~~~--------~------~~~~~~~d~~eav~~aDvvy~~~w  238 (324)
T 1js1_X          189 AEWM-NATDYEFVITHPEGYELDPKF--------V------GNARVEYDQMKAFEGADFIYAKNW  238 (324)
T ss_dssp             HHHH-HTSSSEEEEECCTTCCCCHHH--------H------TTCEEESCHHHHHTTCSEEEECCC
T ss_pred             HHHH-HHCCCEEEEeCCcccCCChhh--------c------cceEEECCHHHHhCCCCEEEecCc
Confidence            9987 579999999987532111100        0      012335789999999999988443

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=93.34  E-value=0.11  Score=50.82  Aligned_cols=99  Identities=15%  Similarity=0.041  Sum_probs=61.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhh------
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLR------  235 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~------  235 (386)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.+++.....  +       +++.+.. .......++ .+.+.      
T Consensus       185 ~g~~VlV~GaG~vG~~aiqla-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~-~i~~~~~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGA-RLLGAACVIVGDQNPERLK--L-------LSDAGFE-TIDLRNSAPLRDQIDQILGKP  253 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEEESCHHHHH--H-------HHTTTCE-EEETTSSSCHHHHHHHHHSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcCCHHHHH--H-------HHHcCCc-EEcCCCcchHHHHHHHHhCCC
Confidence            688999999999999999975 78999 9999998765421  1       1222321 111111222 22221      


Q ss_pred             hCCEEEEccCCChh----------hhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          236 EADVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       236 ~aDiVvl~lPlt~~----------t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      ..|+|+-+......          .... -.+.++.++++..++.++-.
T Consensus       254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~-~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          254 EVDCGVDAVGFEAHGLGDEANTETPNGA-LNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             CEEEEEECSCTTCBCSGGGTTSBCTTHH-HHHHHHHEEEEEEEECCSCC
T ss_pred             CCCEEEECCCCccccccccccccccHHH-HHHHHHHHhcCCEEEEeccc
Confidence            47999988874310          0001 24567778888888877643

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=93.33  E-value=0.3  Score=46.05  Aligned_cols=101  Identities=17%  Similarity=0.235  Sum_probs=55.7

Q ss_pred             CeEEEEe-cChhHHHHHHHHHh-cCCcEEEEEcC--ChhhHHHH-HHhhhhhhhhhcC-CCCccccccCCHHHHhhhCCE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVE-GFKMNLIYYDL--YQATRLEK-FVTAYGQFLKANG-EQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~-~fg~~V~~~d~--~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~aDi  239 (386)
                      ++|+|+| .|.+|..++..|+. +...++..+|+  .... .+. ..+.    .+... ..+..... .+ .+.++.||+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~-~~~~~~dl----~~~~~~~~~~~v~~-~~-~~a~~~aDv   73 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD-TVGQAADT----NHGIAYDSNTRVRQ-GG-YEDTAGSDV   73 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH-HHHHHHHH----HHHHTTTCCCEEEE-CC-GGGGTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhh-HHHHHHHH----HHHHhhCCCcEEEe-CC-HHHhCCCCE
Confidence            4799999 99999999988743 23337888998  5432 111 1111    01100 11111111 23 667899999


Q ss_pred             EEEccCCChh---hh-hc------ccH---HHHhcCCCCcEEEEcCC
Q 016620          240 ISLHPVLDKT---TY-HL------INK---ERLATMKKEAILVNCSR  273 (386)
Q Consensus       240 Vvl~lPlt~~---t~-~l------i~~---~~~~~mk~gailIN~aR  273 (386)
                      |+++......   ++ .+      +-.   +.+....+.+++++++-
T Consensus        74 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SN  120 (303)
T 1o6z_A           74 VVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (303)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            9999764321   11 00      111   22333467889998744

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=93.32  E-value=0.1  Score=50.12  Aligned_cols=37  Identities=14%  Similarity=0.015  Sum_probs=32.4

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|++|.|+| .|.||..+++.+ +..|++|++.+++...
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~Vi~~~~~~~~  199 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLT-RMAGAIPLVTAGSQKK  199 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeCCHHH
Confidence            588999999 799999999986 7899999999987643

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=93.32  E-value=0.12  Score=49.85  Aligned_cols=98  Identities=16%  Similarity=0.204  Sum_probs=54.1

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCCh---h--hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ---A--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .+|+|+| .|.+|+.+.++|..--..++.....+.   .  ....   +.|+. ++  +.....+....+.+++++++|+
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~---~~~p~-~~--~~~~~~v~~~~~~~~~~~~~Dv   78 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLIS---DLHPQ-LK--GIVELPLQPMSDISEFSPGVDV   78 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHH---HHCGG-GT--TTCCCBEEEESSGGGTCTTCSE
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchH---HhCcc-cc--CccceeEeccCCHHHHhcCCCE
Confidence            4799999 599999999988533456776654332   1  1111   11110 11  1101111111034555589999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      |+.|+|... +..+. ...   .+.|+.+|+.|.-
T Consensus        79 vf~a~p~~~-s~~~~-~~~---~~~g~~vIDlSa~  108 (337)
T 3dr3_A           79 VFLATAHEV-SHDLA-PQF---LEAGCVVFDLSGA  108 (337)
T ss_dssp             EEECSCHHH-HHHHH-HHH---HHTTCEEEECSST
T ss_pred             EEECCChHH-HHHHH-HHH---HHCCCEEEEcCCc
Confidence            999999422 22221 222   4679999998764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=93.27  E-value=0.073  Score=51.23  Aligned_cols=102  Identities=13%  Similarity=0.136  Sum_probs=58.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcC---------CcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGF---------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~f---------g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~  235 (386)
                      .+|||+|+|.||+.+++.+. ..         +.+|. ++|++....              .+. +. .....++++++ 
T Consensus         4 irvgIiG~G~VG~~~~~~l~-~~~~~l~~~g~~~~lvaV~d~~~~~~--------------~~~-~~-~~~~~d~~~ll-   65 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVL-ERAEELSAFGVVPRFLGVLVRDPRKP--------------RAI-PQ-ELLRAEPFDLL-   65 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HTGGGGGGGTEEEEEEEEECSCTTSC--------------CSS-CG-GGEESSCCCCT-
T ss_pred             eEEEEEcCCHHHHHHHHHHH-hChhhHhhcCCCEEEEEEEECCHHHh--------------hcc-Cc-ccccCCHHHHh-
Confidence            36999999999999999874 33         45654 556653220              011 11 11245777888 


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN  289 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~aL~~g  289 (386)
                      +.|+|+.|+|........+ .   ..++.|.-+|...-..+ -.-+.|.++.++.
T Consensus        66 ~iDvVve~t~~~~~a~~~~-~---~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           66 EADLVVEAMGGVEAPLRLV-L---PALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             TCSEEEECCCCSHHHHHHH-H---HHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             CCCEEEECCCCcHHHHHHH-H---HHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            8999999998642211111 2   23444544444222112 3456777777665

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=93.23  E-value=0.11  Score=48.32  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=31.1

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ..+.|+++.|.|. |.||+++|+.|+ ..|++|++.+|+.
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~-~~G~~V~~~~r~~   57 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLH-QTGYRVVIHYHNS   57 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHH-HHTCEEEEEESSC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCeEEEEeCCc
Confidence            4688999999975 899999999985 6799999999876

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=93.16  E-value=0.57  Score=46.78  Aligned_cols=120  Identities=15%  Similarity=0.092  Sum_probs=66.3

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCC-------hh--hHHHHHHh---hhhhhhhhc--CCCCcccc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY-------QA--TRLEKFVT---AYGQFLKAN--GEQPVTWK  225 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~-------~~--~~~~~~~~---~~~~~~~~~--~~~~~~~~  225 (386)
                      .++.|+||.|-|+|++|+..|+.| ...|++|+ +.|.+       .-  ..+....+   .....+...  ......  
T Consensus       235 ~~l~g~~VaVQG~GnVG~~aa~~L-~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~--  311 (456)
T 3r3j_A          235 DNLENKKCLVSGSGNVAQYLVEKL-IEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAK--  311 (456)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHH-HHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCE--
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCce--
Confidence            469999999999999999999987 57899986 45532       10  11111000   000000000  000111  


Q ss_pred             ccCCHHHH-hhhCCEEEEccCCChhhhhcccHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          226 RASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       226 ~~~~l~el-l~~aDiVvl~lPlt~~t~~li~~~~~~~mk--~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      .. +-+++ -..|||.+=|.-     .+.|+.+...++.  +-.+++-.+-+++-.+.  .+.|.+..|
T Consensus       312 ~v-~~~~i~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA--~~iL~~rGI  372 (456)
T 3r3j_A          312 YF-ENQKPWNIPCDIAFPCAT-----QNEINENDADLFIQNKCKMIVEGANMPTHIKA--LHKLKQNNI  372 (456)
T ss_dssp             EE-CSCCGGGSCCSEEEECSC-----TTCBCHHHHHHHHHHTCCEEECCSSSCBCTTH--HHHHHTTTC
T ss_pred             Ee-CCccccccCccEEEeCCC-----ccchhhHHHHHHHhcCCeEEEecCCCCCCHHH--HHHHHHCCC
Confidence            11 11222 246898887753     5667777666662  23477888888864433  256665443

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=93.12  E-value=0.19  Score=48.27  Aligned_cols=37  Identities=22%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|++|.|.|. |.||..+++.+ +..|++|++.+++...
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a-~~~Ga~Vi~~~~~~~~  207 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEG  207 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHH
T ss_pred             CcCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChhH
Confidence            5889999998 99999999986 7899999999987643

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=93.12  E-value=0.044  Score=50.65  Aligned_cols=38  Identities=18%  Similarity=0.132  Sum_probs=28.5

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ..+.||++.|.|. |.||+++|+.|+ .-|++|+..+++.
T Consensus        23 m~~~~k~~lVTGas~GIG~aia~~la-~~G~~Vv~~~~~~   61 (267)
T 3u5t_A           23 MMETNKVAIVTGASRGIGAAIAARLA-SDGFTVVINYAGK   61 (267)
T ss_dssp             ----CCEEEEESCSSHHHHHHHHHHH-HHTCEEEEEESSC
T ss_pred             cccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEcCCC
Confidence            3578999999987 899999999985 6799998875443

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=93.10  E-value=0.15  Score=49.73  Aligned_cols=100  Identities=20%  Similarity=0.121  Sum_probs=59.9

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh------h
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~------~  236 (386)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++.....  +       .++.+..........++.+.+.      .
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlA-k~~Ga~~Vi~~~~~~~~~~--~-------a~~lGa~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPARLA--H-------AKAQGFEIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHH--H-------HHHTTCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCeEEEEcCCHHHHH--H-------HHHcCCcEEccCCcchHHHHHHHHhCCCC
Confidence            678999999999999999974 78999 7999988764421  1       1222321111111112333221      4


Q ss_pred             CCEEEEccCCChhh-----hh-----cccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTT-----YH-----LINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t-----~~-----li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+-++......     .+     -.-.+.++.++++..++.++-
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            79998888642100     00     012456777888888887764

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=93.09  E-value=0.23  Score=45.95  Aligned_cols=76  Identities=11%  Similarity=0.115  Sum_probs=46.5

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh-h-----hHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhh
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ-A-----TRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLR  235 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~-~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~  235 (386)
                      +++|.|.|. |.||+.+++.|+ .-|.+|++.+|+. .     ..... ...    +...+..-.  ......++.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~~~~~-~~~----l~~~~v~~v~~D~~d~~~l~~~~~   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASI-KAGNPTYALVRKTITAANPETKEEL-IDN----YQSLGVILLEGDINDHETLVKAIK   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HHTCCEEEEECCSCCSSCHHHHHHH-HHH----HHHTTCEEEECCTTCHHHHHHHHT
T ss_pred             CcEEEEECCCchHHHHHHHHHH-hCCCcEEEEECCCcccCChHHHHHH-HHH----HHhCCCEEEEeCCCCHHHHHHHHh
Confidence            578999996 999999999884 5688999998875 1     11110 000    111111100  0111235667788


Q ss_pred             hCCEEEEccCC
Q 016620          236 EADVISLHPVL  246 (386)
Q Consensus       236 ~aDiVvl~lPl  246 (386)
                      .+|+|+.+.+.
T Consensus        76 ~~d~vi~~a~~   86 (307)
T 2gas_A           76 QVDIVICAAGR   86 (307)
T ss_dssp             TCSEEEECSSS
T ss_pred             CCCEEEECCcc
Confidence            89999888764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=93.06  E-value=0.2  Score=46.32  Aligned_cols=77  Identities=19%  Similarity=0.241  Sum_probs=46.8

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh----HHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhC
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT----RLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~a  237 (386)
                      .++|.|.|. |.||+.+++.|+ ..|.+|++.+|+...    ...+....    +...+....  ......++.++++.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~l~R~~~~~~~~~~~~~~~~----l~~~~v~~v~~D~~d~~~l~~~~~~~   78 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASL-DLGHPTFLLVRESTASSNSEKAQLLES----FKASGANIVHGSIDDHASLVEAVKNV   78 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCCCCTTTTHHHHHHHHH----HHTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHH-hCCCCEEEEECCcccccCHHHHHHHHH----HHhCCCEEEEeccCCHHHHHHHHcCC
Confidence            468999996 999999999984 678999999887421    11110000    111111000  011123566778899


Q ss_pred             CEEEEccCC
Q 016620          238 DVISLHPVL  246 (386)
Q Consensus       238 DiVvl~lPl  246 (386)
                      |+|+.+.+.
T Consensus        79 d~vi~~a~~   87 (308)
T 1qyc_A           79 DVVISTVGS   87 (308)
T ss_dssp             SEEEECCCG
T ss_pred             CEEEECCcc
Confidence            999888763

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=93.06  E-value=0.077  Score=48.73  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=32.3

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      .++.||++.|.|. |.||+++|+.|+ ..|++|+..++..
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~   45 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFA-LESVNLVLHYHQA   45 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHT-TSSCEEEEEESCG
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEecCc
Confidence            3589999999986 889999999984 7899999987653

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=93.04  E-value=0.14  Score=46.92  Aligned_cols=39  Identities=28%  Similarity=0.289  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .+.|+++.|.|. |.||+++|+.|+ ..|++|+..+|+...
T Consensus         3 ~l~~k~vlITGas~gIG~aia~~l~-~~G~~V~~~~r~~~~   42 (263)
T 2a4k_A            3 RLSGKTILVTGAASGIGRAALDLFA-REGASLVAVDREERL   42 (263)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            378899999986 899999999985 679999999987643

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=93.04  E-value=0.085  Score=48.68  Aligned_cols=40  Identities=23%  Similarity=0.084  Sum_probs=33.5

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ..+.||++.|.|. |.||+++|+.|+ ..|++|++.+++...
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la-~~G~~V~~~~~~~~~   64 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELA-AAGAKVAVNYASSAG   64 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCChH
Confidence            4689999999986 789999999985 689999988875443

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=93.03  E-value=0.33  Score=48.07  Aligned_cols=78  Identities=18%  Similarity=0.264  Sum_probs=50.4

Q ss_pred             cCCCeEEEEe-----cCh---hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 016620          163 LKGQTVGVIG-----AGR---IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (386)
Q Consensus       163 l~g~~vgIvG-----~G~---IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (386)
                      +.|.+|+|+|     +|.   +..+++..+ ..||++|.+..|..-.-.+.+.+...+..+..|   ..+....+++|++
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l-~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G---~~v~~~~d~~eav  261 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLM-TRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFG---GNFTKTNSMAEAF  261 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHH-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHS---SEEEEESCHHHHH
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CEEEEEcCHHHHh
Confidence            8899999998     454   889999987 579999999988632101111110000011112   1233457899999


Q ss_pred             hhCCEEEEcc
Q 016620          235 READVISLHP  244 (386)
Q Consensus       235 ~~aDiVvl~l  244 (386)
                      +++|+|..-+
T Consensus       262 ~~ADVVytd~  271 (418)
T 2yfk_A          262 KDADVVYPKS  271 (418)
T ss_dssp             TTCSEEEECC
T ss_pred             cCCCEEEEcc
Confidence            9999999864

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=93.02  E-value=0.083  Score=50.85  Aligned_cols=30  Identities=27%  Similarity=0.444  Sum_probs=24.6

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~  197 (386)
                      +|||+|+|.||+.+.+.|... .++|.+.+.
T Consensus         2 kVgInG~G~IGr~vlr~l~~~-~~evvaind   31 (331)
T 2g82_O            2 KVGINGFGRIGRQVFRILHSR-GVEVALIND   31 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCEEEEEec
Confidence            799999999999999987444 788876543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.00  E-value=0.12  Score=47.41  Aligned_cols=70  Identities=14%  Similarity=0.146  Sum_probs=46.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .++|.|.|.|.||+.+++.| ..-|.+|++.+|+......         +...+.... .....+++  +..+|+|+.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~~---------~~~~~~~~~-~~D~~d~~--~~~~d~vi~~a   71 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRAL-APQGWRIIGTSRNPDQMEA---------IRASGAEPL-LWPGEEPS--LDGVTHLLIST   71 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHH-GGGTCEEEEEESCGGGHHH---------HHHTTEEEE-ESSSSCCC--CTTCCEEEECC
T ss_pred             cCcEEEECCcHHHHHHHHHH-HHCCCEEEEEEcChhhhhh---------HhhCCCeEE-Eecccccc--cCCCCEEEECC
Confidence            37899999999999999998 4679999999998654211         001110000 01122344  78899999887


Q ss_pred             CCC
Q 016620          245 VLD  247 (386)
Q Consensus       245 Plt  247 (386)
                      ...
T Consensus        72 ~~~   74 (286)
T 3ius_A           72 APD   74 (286)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            654

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=93.00  E-value=0.087  Score=50.68  Aligned_cols=94  Identities=12%  Similarity=0.108  Sum_probs=56.6

Q ss_pred             cCCCeEEEEecChhHHHH-HHHHH-hcCCcE-EEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-
Q 016620          163 LKGQTVGVIGAGRIGSAY-ARMMV-EGFKMN-LIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~i-A~~L~-~~fg~~-V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-  235 (386)
                      ..+.+|.|+|.|.+|... ++. + +.+|++ |++.+++..   ..  ++       +++.+.... .....++.+ +. 
T Consensus       171 ~~~~~VlV~GaG~vG~~a~iql-a~k~~Ga~~Vi~~~~~~~~~~~~--~~-------~~~lGa~~v-~~~~~~~~~-i~~  238 (357)
T 2b5w_A          171 WDPSSAFVLGNGSLGLLTLAML-KVDDKGYENLYCLGRRDRPDPTI--DI-------IEELDATYV-DSRQTPVED-VPD  238 (357)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHH-HHCTTCCCEEEEEECCCSSCHHH--HH-------HHHTTCEEE-ETTTSCGGG-HHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHHHcCCcEEEEEeCCcccHHHH--HH-------HHHcCCccc-CCCccCHHH-HHH
Confidence            345899999999999999 886 6 789997 999998764   21  11       112222111 111122322 22 


Q ss_pred             ---hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          236 ---EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       236 ---~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                         ..|+|+-+... +.+    -...++.++++..++.++-
T Consensus       239 ~~gg~Dvvid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          239 VYEQMDFIYEATGF-PKH----AIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             HSCCEEEEEECSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             hCCCCCEEEECCCC-hHH----HHHHHHHHhcCCEEEEEeC
Confidence               36888877753 111    1445666777777777754

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=92.97  E-value=0.055  Score=52.06  Aligned_cols=104  Identities=16%  Similarity=0.155  Sum_probs=59.8

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhc-CCCCc--c-ccccCCHHHHhhhCC
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPV--T-WKRASSMDEVLREAD  238 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~--~-~~~~~~l~ell~~aD  238 (386)
                      .+++|.|.|. |.||+.+++.|+ .-|.+|++.+|+........       +... +....  . .....++.++++.+|
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~-------l~~~~~v~~v~~D~l~d~~~l~~~~~~~d   75 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAA-AVGHHVRAQVHSLKGLIAEE-------LQAIPNVTLFQGPLLNNVPLMDTLFEGAH   75 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHH-HTTCCEEEEESCSCSHHHHH-------HHTSTTEEEEESCCTTCHHHHHHHHTTCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-hCCCEEEEEECCCChhhHHH-------HhhcCCcEEEECCccCCHHHHHHHHhcCC
Confidence            3678999995 999999999984 57899999988754321110       1100 00000  0 111224667789999


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCC-C--cEEEEcCCCc
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKK-E--AILVNCSRGP  275 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~-g--ailIN~aRg~  275 (386)
                      +|+.+...............+..+++ |  ..||.+|...
T Consensus        76 ~Vi~~a~~~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           76 LAFINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             EEEECCCSTTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            99977654311112223444444432 3  3788887753

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=92.95  E-value=0.13  Score=49.48  Aligned_cols=116  Identities=16%  Similarity=0.164  Sum_probs=61.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhc-----C--CcEEE-EEcCChhhHHH-----HHHhhhhhhhhhcCCCCccccccC---C
Q 016620          166 QTVGVIGAGRIGSAYARMMVEG-----F--KMNLI-YYDLYQATRLE-----KFVTAYGQFLKANGEQPVTWKRAS---S  229 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~-----f--g~~V~-~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~  229 (386)
                      .+|||+|+|.||+.+++.+.+.     .  +.+|. ++|++......     .+.+.    ... +  ... ....   +
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~----~~~-~--~~~-~~~~~~~d   78 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISY----KEK-G--SLD-SLEYESIS   78 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHH----HHT-T--CGG-GCCSEECC
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhh----hcc-C--Ccc-cccCCCCC
Confidence            4799999999999999887431     1  35654 55665432110     01000    000 0  000 0123   7


Q ss_pred             HHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCC
Q 016620          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNP  290 (386)
Q Consensus       230 l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~~aL~~g~  290 (386)
                      +++++ .+.|+|+.|+|.. .|.+.--+-....++.|.-+|...-..+ .+-+.|.++.++..
T Consensus        79 ~~~ll~~~iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~g  140 (331)
T 3c8m_A           79 ASEALARDFDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNN  140 (331)
T ss_dssp             HHHHHHSSCSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcC
Confidence            88887 3579999999975 1111111223344556665555333233 23466777666544

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=92.81  E-value=0.15  Score=51.67  Aligned_cols=64  Identities=19%  Similarity=0.191  Sum_probs=45.7

Q ss_pred             CCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      +++|.|.| .|.||+.+++.| ..-|.+|++.+|+.....                 ...+.....+.+.+..+|+|+.+
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L-~~~G~~V~~l~R~~~~~~-----------------~v~~d~~~~~~~~l~~~D~Vih~  208 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQL-QTGGHEVIQLVRKEPKPG-----------------KRFWDPLNPASDLLDGADVLVHL  208 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEESSSCCTT-----------------CEECCTTSCCTTTTTTCSEEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCCCcc-----------------ceeecccchhHHhcCCCCEEEEC
Confidence            78999999 599999999998 467999999998754310                 00011112345667899999887


Q ss_pred             cCC
Q 016620          244 PVL  246 (386)
Q Consensus       244 lPl  246 (386)
                      ...
T Consensus       209 A~~  211 (516)
T 3oh8_A          209 AGE  211 (516)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=92.77  E-value=0.16  Score=46.34  Aligned_cols=39  Identities=23%  Similarity=0.313  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .+.|+++.|.|. |.||+++|+.|+ .-|++|++.+|+...
T Consensus         4 m~~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~   43 (267)
T 2gdz_A            4 MVNGKVALVTGAAQGIGRAFAEALL-LKGAKVALVDWNLEA   43 (267)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            478899999986 899999999985 679999999987643

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=92.77  E-value=0.41  Score=46.18  Aligned_cols=94  Identities=15%  Similarity=0.050  Sum_probs=57.0

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----h
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~  236 (386)
                      -.|.+|.|+|. |.+|...++.+ +..|++|++.. +... .+ +       .++.+..........++.+.+.     .
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla-~~~Ga~Vi~~~-~~~~-~~-~-------~~~lGa~~vi~~~~~~~~~~v~~~t~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQML-RLSGYIPIATC-SPHN-FD-L-------AKSRGAEEVFDYRAPNLAQTIRTYTKNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHH-HHTTCEEEEEE-CGGG-HH-H-------HHHTTCSEEEETTSTTHHHHHHHHTTTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHHH-HHCCCEEEEEe-CHHH-HH-H-------HHHcCCcEEEECCCchHHHHHHHHccCC
Confidence            47899999999 89999999985 78999998875 3322 11 1       2222322111111233433332     3


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcC-CCCcEEEEcC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~m-k~gailIN~a  272 (386)
                      .|+|+-++.. +.+    -...+..+ +++..++.++
T Consensus       232 ~d~v~d~~g~-~~~----~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCITN-VES----TTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESSCS-HHH----HHHHHHHSCTTCEEEEESS
T ss_pred             ccEEEECCCc-hHH----HHHHHHHhhcCCCEEEEEe
Confidence            7888888763 221    13455667 5777888775

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=92.65  E-value=0.15  Score=50.71  Aligned_cols=114  Identities=18%  Similarity=0.152  Sum_probs=69.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~ell~~aDiVv  241 (386)
                      +.+++|.|||+|..|.+.|+.| ...|.+|.++|.+.......       .+. .+   ..+. .... ++.+..+|.|+
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~~~-------~l~-~G---~~~~~g~~~-~~~~~~~d~vV   69 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLD-------KLP-EA---VERHTGSLN-DEWLMAADLIV   69 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHH-HTTTCCCEEEESSSSCTTGG-------GSC-TT---SCEEESSCC-HHHHHTCSEEE
T ss_pred             CCCCEEEEEeecHHHHHHHHHH-HhCCCEEEEEECCCCcchhH-------Hhh-CC---CEEEECCCc-HHHhccCCEEE
Confidence            5788999999999999999887 68899999999765331000       111 12   2221 1112 45666899999


Q ss_pred             EccCCC---hhhh-------hcccHH-H-HhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          242 LHPVLD---KTTY-------HLINKE-R-LATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       242 l~lPlt---~~t~-------~li~~~-~-~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      +.....   |.-.       .++.+- . ...++...+-|--+.|+.--..-|...|++.
T Consensus        70 ~s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~  129 (439)
T 2x5o_A           70 ASPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  129 (439)
T ss_dssp             ECTTSCTTCHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             eCCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            875332   2211       233331 1 2235555666777778876555566666653

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=92.63  E-value=0.082  Score=47.25  Aligned_cols=77  Identities=13%  Similarity=0.159  Sum_probs=49.3

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCc--EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       163 l~g~~vgIvG-~G~IG~~iA~~L~~~fg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      +.++++.|.| .|.||+.+++.|+ .-|.  +|++.+|+........       ...............+++++++..|+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~-~~G~~~~V~~~~r~~~~~~~~~-------~~~~~~~~~D~~d~~~~~~~~~~~d~   87 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEIL-EQGLFSKVTLIGRRKLTFDEEA-------YKNVNQEVVDFEKLDDYASAFQGHDV   87 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHH-HHTCCSEEEEEESSCCCCCSGG-------GGGCEEEECCGGGGGGGGGGGSSCSE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHH-cCCCCCEEEEEEcCCCCccccc-------cCCceEEecCcCCHHHHHHHhcCCCE
Confidence            5678999999 5999999999985 6688  9999998754311000       00000000011122456677888999


Q ss_pred             EEEccCCC
Q 016620          240 ISLHPVLD  247 (386)
Q Consensus       240 Vvl~lPlt  247 (386)
                      |+.+....
T Consensus        88 vi~~ag~~   95 (242)
T 2bka_A           88 GFCCLGTT   95 (242)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99988754

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=92.59  E-value=0.54  Score=47.44  Aligned_cols=115  Identities=18%  Similarity=0.177  Sum_probs=68.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEc--------CChh--hHHHHHHhhhhhhhhhcCCCCccccccCCHH
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d--------~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (386)
                      ++.|+||.|-|+|++|+..|+.| ...|++|++..        +..-  ..+..+.+..+    .....+ ......+ +
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L-~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g----~i~~~~-~a~~~~~-~  313 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYL-HRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHG----TILGFP-KAKIYEG-S  313 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHS----SSTTCT-TSEEECS-C
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcC----Ceeccc-Cceeecc-c
Confidence            58999999999999999999998 57899998742        2211  11111111100    000000 0111111 1


Q ss_pred             HHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       232 ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      =+-..|||.+=|.-     .+.|+.+...+++ -.+++-.+-+.+ ..+| .+.|.+..|
T Consensus       314 il~~~~DIliPcA~-----~n~I~~~na~~l~-akiV~EgAN~p~-T~eA-~~iL~~rGI  365 (501)
T 3mw9_A          314 ILEVDCDILIPAAS-----EKQLTKSNAPRVK-AKIIAEGANGPT-TPEA-DKIFLERNI  365 (501)
T ss_dssp             GGGSCCSEEEECSS-----SCCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTC
T ss_pred             cccccceEEeeccc-----cCccCHhHHHHcC-ceEEEeCCCCcC-CHHH-HHHHHHCCC
Confidence            12357999887764     5677887777775 458888888874 4443 456655443

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=92.56  E-value=0.3  Score=46.04  Aligned_cols=38  Identities=24%  Similarity=0.521  Sum_probs=32.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCCh
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~  199 (386)
                      ..|++++|.|||+|.+|..+|+.|+ ..|. ++..+|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La-~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLT-RCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCc
Confidence            4699999999999999999999986 4454 788888654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=92.48  E-value=0.21  Score=46.28  Aligned_cols=40  Identities=18%  Similarity=0.154  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ..+.|+++.|.|. |.||+++|+.|+ .-|++|++.+++...
T Consensus        25 ~~~~~k~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~   65 (280)
T 4da9_A           25 TQKARPVAIVTGGRRGIGLGIARALA-ASGFDIAITGIGDAE   65 (280)
T ss_dssp             SCCCCCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCCHH
T ss_pred             hccCCCEEEEecCCCHHHHHHHHHHH-HCCCeEEEEeCCCHH
Confidence            4688999999986 789999999985 789999999864433

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=92.47  E-value=0.41  Score=46.23  Aligned_cols=114  Identities=18%  Similarity=0.198  Sum_probs=67.5

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhc--CC----cEEEEEcCChhhH-HHHH-HhhhhhhhhhcC-CCCccccccCCHHH
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEG--FK----MNLIYYDLYQATR-LEKF-VTAYGQFLKANG-EQPVTWKRASSMDE  232 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~--fg----~~V~~~d~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~e  232 (386)
                      ....+|.|+|. |.||++++-+|+++  ||    .++..||...... .+.. .+     +.... ..........+..+
T Consensus        22 ~~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~D-----L~~~~~~~~~~~~~~~~~~~   96 (345)
T 4h7p_A           22 MSAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAE-----LEDCAFPLLDKVVVTADPRV   96 (345)
T ss_dssp             CCCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH-----HHHTTCTTEEEEEEESCHHH
T ss_pred             CCCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhh-----hhhcCccCCCcEEEcCChHH
Confidence            55669999997 99999999887542  45    3799999765321 1110 11     11111 11112233467889


Q ss_pred             HhhhCCEEEEcc--CCChh-hhh-cc--cHH--------HHhcCCCCcEEEEcCCCcccCHHHHH
Q 016620          233 VLREADVISLHP--VLDKT-TYH-LI--NKE--------RLATMKKEAILVNCSRGPVIDEVALV  283 (386)
Q Consensus       233 ll~~aDiVvl~l--Plt~~-t~~-li--~~~--------~~~~mk~gailIN~aRg~~vde~aL~  283 (386)
                      .+++||+|+++.  |..|. |+. ++  |.+        .-+..+|+++++-++-  .+|.-..+
T Consensus        97 a~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN--Pvd~~~~i  159 (345)
T 4h7p_A           97 AFDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN--PANTNALI  159 (345)
T ss_dssp             HTTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHH
T ss_pred             HhCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC--CcchHHHH
Confidence            999999999975  43331 221 22  111        2233568888877764  57766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	386
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	9e-39
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	9e-28
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	6e-27
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	5e-26
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	3e-25
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	3e-15
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	5e-15
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	6e-15
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	7e-15
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	7e-14
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	1e-13
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	8e-12
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	1e-10
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	2e-09
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	4e-08
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	2e-07
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	3e-06
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	7e-05
d1pgja2	178	c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase	2e-04

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  135 bits (340), Expect = 9e-39
 Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 15/206 (7%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           +T  TAE+A  L L +ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238
           A A+   +GF M++ Y+D ++A               ++ E         S+D +L  + 
Sbjct: 61  ALAKRA-QGFDMDIDYFDTHRA--------------SSSDEASYQATFHDSLDSLLSVSQ 105

Query: 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
             SL+      T +  NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DV
Sbjct: 106 FFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 165

Query: 299 FEDEPYMKPGLSEMKNAIVVPHIASA 324
           F  EP +  G  ++ N  + PHI SA
Sbjct: 166 FAGEPNINEGYYDLPNTFLFPHIGSA 191

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  105 bits (263), Expect = 9e-28
 Identities = 67/202 (33%), Positives = 97/202 (48%), Gaps = 20/202 (9%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
             + AE A +L LAA+R+I  AD  +R      W  + F G  + G+TVGV+G GRIG  
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREH---TWKRSSFSGTEIFGKTVGVVGLGRIGQL 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A+ +   F   ++ YD Y +      +                     S+D++L  AD 
Sbjct: 59  VAQRIAA-FGAYVVAYDPYVSPARAAQLGIE----------------LLSLDDLLARADF 101

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           IS+H      T  LI+KE LA  K   I+VN +RG ++DE AL + +    +   GLDVF
Sbjct: 102 ISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 161

Query: 300 EDEPYMKPGLSEMKNAIVVPHI 321
             EP     L E+   +V PH+
Sbjct: 162 ATEPCTDSPLFELAQVVVTPHL 183

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  103 bits (258), Expect = 6e-27
 Identities = 56/208 (26%), Positives = 88/208 (42%), Gaps = 22/208 (10%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLY----DGWLPNLFVGNLLKGQTVGVIGAGRI 176
           E TA+      L   RR     + +R G      +           ++G+T+G+IG GR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236
           G A A          L Y                              +R S++ ++L  
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERAL----------------GLQRVSTLQDLLFH 104

Query: 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           +D ++LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    L
Sbjct: 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 164

Query: 297 DVFEDEPYMKPG--LSEMKNAIVVPHIA 322
           DV E EP+      L +  N I  PH A
Sbjct: 165 DVHESEPFSFSQGPLKDAPNLICTPHAA 192

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  101 bits (251), Expect = 5e-26
 Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 17/202 (8%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           + AE    + L+  R  + + E+ R G ++     +     L+   VG + AGRIG A  
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVL 60

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           R +   F ++L Y D ++                 + E+ +     ++ +++    DV++
Sbjct: 61  RRL-APFDVHLHYTDRHRLPE--------------SVEKELNLTWHATREDMYPVCDVVT 105

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFED 301
           L+  L   T H+IN E L   K+ A +VN +RG + D  A+   L+   +     DV+  
Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 165

Query: 302 EPYMKPG-LSEMKNAIVVPHIA 322
           +P  K      M    + PHI+
Sbjct: 166 QPAPKDHPWRTMPYNGMTPHIS 187

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 98.9 bits (245), Expect = 3e-25
 Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 27/208 (12%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
           T + AEL     L   R + EA+     G+ +      F                   + 
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF------------------EAR 43

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
             ++ + G+        +   +          +     G           + ++L  +DV
Sbjct: 44  GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQH----LSDLLNMSDV 99

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +SLH   + +T +++  + ++ MK  ++L+N SRG V+D  AL + L    +    +DVF
Sbjct: 100 VSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 159

Query: 300 EDEPYMKPG-----LSEMKNAIVVPHIA 322
             EP          L+E  N ++ PHI 
Sbjct: 160 PTEPATNSDPFTSPLAEFDNVLLTPHIG 187

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 71.8 bits (174), Expect = 3e-15
 Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 35/216 (16%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
              AE AA  +    R+    DE +             +G  ++ Q VGV+G G IG  +
Sbjct: 2   NAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVGTGHIGQVF 58

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
            ++M       + Y                                  S+D++ ++ADVI
Sbjct: 59  MQIMEGFGAKVITYDIFRNPE------------------LEKKGYYVDSLDDLYKQADVI 100

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E
Sbjct: 101 SLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160

Query: 301 DEPYMKPG--------------LSEMKNAIVVPHIA 322
            E  +                 L    N +V P  A
Sbjct: 161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTA 196

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 68.9 bits (168), Expect = 5e-15
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 18  VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET 77
               +      +     +    +E  T+       E+ +       DG+    T  +   
Sbjct: 5   AYGARVDEIQYFKQWAKDTGNTLEYHTEFLD----ENTVEWAKG-FDGINSLQTTPYAAG 59

Query: 78  LFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
           +F  +   G K  +   VG +N+D+ A  +YGI + N P         +           
Sbjct: 60  VFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDF 119

Query: 138 IVEADEFMRAG 148
           + + +      
Sbjct: 120 LTKGETSTEVT 130

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 70.6 bits (171), Expect = 6e-15
 Identities = 49/217 (22%), Positives = 83/217 (38%), Gaps = 35/217 (16%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
               AE A + +L   R + +    ++AG Y+     +       GQ    +        
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKEL---GQQTVGVMGTGHIGQ 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A  + +GF   +I YD Y                              S++++ +++DV
Sbjct: 59  VAIKLFKGFGAKVIAYDPYPMKGDHP------------------DFDYVSLEDLFKQSDV 100

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           I LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +
Sbjct: 101 IDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY 160

Query: 300 EDEPYMKPG--------------LSEMKNAIVVPHIA 322
           E E                    L  M N ++ PHIA
Sbjct: 161 EYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIA 197

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 68.5 bits (167), Expect = 7e-15
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLP-EAAMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P   T+   ++A   +   
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLI 115

Query: 135 ARRIVEAD 142
                 AD
Sbjct: 116 DALFGGAD 123

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 67.1 bits (162), Expect = 7e-14
 Identities = 42/204 (20%), Positives = 73/204 (35%), Gaps = 27/204 (13%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           +  AE A +L LA  +RI++  E M+ G Y   +        L       +         
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-----IPLIQGEKVAVLGLGEIGTR 56

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
              ++      +  +                        +   W+  +S++E LREA   
Sbjct: 57  VGKILAALGAQVRGFSRTP--------------------KEGPWRFTNSLEEALREARAA 96

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
                L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F    DV+ 
Sbjct: 97  VCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW 156

Query: 301 DEPYMKPG--LSEMKNAIVVPHIA 322
                        + N +  P +A
Sbjct: 157 GRNDFAKDAEFFSLPNVVATPWVA 180

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 18  ALGDQVEVRWVDG----PDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPK--LKIVAR 70

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P   +   A+  A   +A + R+  A EF+   +  G
Sbjct: 71  AGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG 130

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 59.9 bits (145), Expect = 8e-12
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
           +    +    VE+      +L+  + +AL     DGV+     D+      AL+  G   
Sbjct: 16  LKEWEDAHKDVEV-EYTDKLLT-PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITK 72

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI 138
            S   VG +N+D+  A + G  + N P     +    A    +  A   
Sbjct: 73  MSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDN 118

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 24  MPGTRWINLLIEQDCRVEICTQKK-------TILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           MP    + LL  +DC VE+   K           S ++I   + ++  G +   T     
Sbjct: 1   MP---LVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTR 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
                      +    +  G++N+D+ +A   GIAV N P     +  + +  +   AAR
Sbjct: 58  EDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVYS-EQASIEMREEAAR 114

Query: 137 RIVEADEFMRAG 148
            I  A       
Sbjct: 115 EIRRAITGRIPD 126

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 26/142 (18%), Positives = 50/142 (35%), Gaps = 21/142 (14%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
             ++ G+   V G G +G   A+ +  GF   +I  ++     L+  +   G        
Sbjct: 19  DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAM--EGY------- 68

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVID 278
                   ++MDE  +E ++             +I       MK +AI+ N       ID
Sbjct: 69  ------EVTTMDEACQEGNIFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEID 118

Query: 279 EVALVEHLKQNPMFRVGLDVFE 300
              L E+  +    +  +D + 
Sbjct: 119 VKWLNENAVEKVNIKPQVDRYR 140

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 50.4 bits (120), Expect = 4e-08
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIV 139
           K      +G ++VD+ +A    + V       + T    A                R I 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIR 174

Query: 140 EADEFMRAGLY 150
           +    ++ G  
Sbjct: 175 DEYLIVQGGAL 185

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 24/108 (22%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV 100
                 K  L  E +   I D    +   L      T     +     A    A+G N V
Sbjct: 27  TNIEFHKGALDDEQLKESIRD-AHFIG--LRSRTHLTEDVINAAEKLVAIGAFAIGTNQV 83

Query: 101 DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG 148
           D++AA K GI V N P   T+   E           +  +    + A 
Sbjct: 84  DLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 131

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 31/96 (32%)

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K    +  G +++   +     + V    G        +   + + A R          
Sbjct: 51  LKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR---------- 99

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                                +     G      A+
Sbjct: 100 --------------------NLITYATGGRPRNIAK 115

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.7 bits (92), Expect = 7e-05
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 16/109 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L+ +   ++G G +    AR+++E                    +T              
Sbjct: 10  LRDRDCLIVGGGDVAERKARLLLE----------------AGARLTVNALTFIPQFTVWA 53

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                + ++    E  + S    +  T    +N+      +   I  N 
Sbjct: 54  NEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 7/146 (4%)

Query: 168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           VGV+G G +G+  A  + E GFK  +  ++   + + E+F+ A      A   +      
Sbjct: 4   VGVVGLGVMGANLALNIAEKGFK--VAVFNRTYS-KSEEFMKANASAPFAGNLKAFETME 60

Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            +    + +    + L      T   +         +K  ILV+       D+    + L
Sbjct: 61  -AFAASLKKPRKALILVQAGAATDSTIEQ--LKKVFEKGDILVDTGNAHFKDQGRRAQQL 117

Query: 287 KQNPMFRVGLDVFEDEPYMKPGLSEM 312
           +   +  +G+ +   E   + G +  
Sbjct: 118 EAAGLRFLGMGISGGEEGARKGPAFF 143

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	386
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.88
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.84
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.82
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.8
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.8
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.76
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.73
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.71
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.68
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.48
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.36
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.31
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.3
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.22
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.1
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.82
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.81
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.8
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.74
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.72
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.68
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.55
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.42
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.38
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.36
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.33
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.28
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.28
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.19
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.04
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.04
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.95
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.94
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.94
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.91
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.88
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.88
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.88
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.79
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.79
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.7
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.68
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.61
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.55
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.54
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.41
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.4
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.38
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.36
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.35
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.34
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.31
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.31
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.27
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.23
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.17
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.16
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.15
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.14
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.1
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.09
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.08
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.06
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.04
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.03
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.03
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.01
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.88
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	96.87
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.85
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.82
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.81
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	96.8
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.79
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.75
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.73
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.7
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.66
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.63
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.59
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.58
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.55
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.52
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.51
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.51
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.48
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.39
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.35
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.31
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.29
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.18
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.17
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.16
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	96.11
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.09
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.07
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.02
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.02
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.93
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.92
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.89
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.71
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.68
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.67
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	95.66
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.58
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.55
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.53
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	95.38
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	95.27
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.19
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.18
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.05
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.03
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	94.95
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	94.92
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	94.85
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	94.85
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.69
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.69
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.66
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.65
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	94.54
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	94.51
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	94.45
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	94.43
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	94.25
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	94.25
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.21
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.14
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	94.1
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	94.09
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.09
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	94.01
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.84
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.8
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.79
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.76
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	93.62
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	93.48
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.46
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	93.43
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	93.33
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	93.29
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	93.14
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.14
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	92.93
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.92
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	92.83
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	92.77
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	92.66
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.58
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	92.52
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.49
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	92.38
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	92.3
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	92.28
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	92.2
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	92.2
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	92.18
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.15
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	92.12
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.12
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	92.12
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.02
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.02
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	91.96
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	91.9
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	91.85
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	91.84
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	91.72
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	91.68
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	91.64
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.58
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.53
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	91.49
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	91.49
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	91.38
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.37
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	91.32
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.3
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	91.27
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	91.23
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	91.18
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	91.09
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	91.04
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	91.02
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	91.02
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	90.98
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.92
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.9
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	90.69
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.62
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	90.54
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	90.52
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	90.52
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	90.39
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	90.38
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.35
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.21
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	90.1
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	89.98
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	89.92
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.77
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	89.58
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	89.33
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	89.33
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.24
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	89.24
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.24
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.11
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	89.07
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	89.04
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	88.86
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	88.79
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	88.74
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	88.69
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	88.55
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.52
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.46
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	88.42
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	88.22
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	88.0
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	87.64
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.6
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	87.46
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	87.32
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	87.31
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	87.2
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	86.94
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	86.77
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	86.54
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	86.2
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	85.86
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	85.57
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	85.36
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	85.33
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	85.23
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	85.13
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	85.09
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	84.84
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	84.84
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.69
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	84.65
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	84.63
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.62
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	84.62
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	84.57
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	84.5
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.34
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.25
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	83.86
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	83.15
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	82.63
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	82.21
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.1
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.06
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	81.87
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	81.47
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	81.4
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	81.37
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.05
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	80.9
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	80.8
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	80.56

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=3.3e-51  Score=368.46  Aligned_cols=190  Identities=33%  Similarity=0.537  Sum_probs=173.1

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       120 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +.+|||+++++||++.|++..+++.+++|.|..|.+....|++++|+++||+|+|.||+.+|+++ ++|||+|++||++.
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   80 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDYFDTHR   80 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHH-Hhhccccccccccc
Confidence            46899999999999999999999999999999998877788999999999999999999999997 79999999999876


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016620          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde  279 (386)
                      ........              .......++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++|||
T Consensus        81 ~~~~~~~~--------------~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde  146 (191)
T d1gdha1          81 ASSSDEAS--------------YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN  146 (191)
T ss_dssp             CCHHHHHH--------------HTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred             cccchhhc--------------ccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhh
Confidence            53222110              0122457899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCC
Q 016620          280 VALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASA  324 (386)
Q Consensus       280 ~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~  324 (386)
                      +||+++|++|++.+|++|||++||.++++||++|||++|||+|+.
T Consensus       147 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         147 ELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             HHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             HHHHHHHHcCCceEEEEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999999999999999999888899999999999999974

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=7.3e-51  Score=364.43  Aligned_cols=184  Identities=36%  Similarity=0.515  Sum_probs=167.3

Q ss_pred             CchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       119 ~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      |+++||||++++||++.|++..+++.++++.|.   ...+.+.++.|+++||+|+|.||+.+|+++ ++|||+|++||++
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~---~~~~~~~~l~~k~vgiiG~G~IG~~va~~~-~~fg~~v~~~d~~   76 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWK---RSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYDPY   76 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCC---GGGCCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECTT
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCC---ccccccccccceeeeeccccchhHHHHHHh-hhccceEEeecCC
Confidence            578999999999999999999999999999874   233567899999999999999999999997 7999999999998


Q ss_pred             hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (386)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd  278 (386)
                      .........                .....+++|++++||+|++|||+|++|+++||++.|++||++++|||+|||++||
T Consensus        77 ~~~~~~~~~----------------~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVd  140 (184)
T d1ygya1          77 VSPARAAQL----------------GIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD  140 (184)
T ss_dssp             SCHHHHHHH----------------TCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             CChhHHhhc----------------CceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhh
Confidence            755322110                1134799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCC
Q 016620          279 EVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIA  322 (386)
Q Consensus       279 e~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia  322 (386)
                      |+||+++|++|+|.+|+||||++||++++|||++|||++|||||
T Consensus       141 e~aL~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         141 EAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             HHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             hHHHHHHHhcCcEeEEEEeCCCCCCCCCchHhcCCCEEECCCCC
Confidence            99999999999999999999999999988999999999999997

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=1.5e-49  Score=358.10  Aligned_cols=187  Identities=32%  Similarity=0.483  Sum_probs=166.3

Q ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCC----CcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEc
Q 016620          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP----NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (386)
Q Consensus       121 ~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~----~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d  196 (386)
                      ++|||++++++|++.|++..+++.+++|.|..+..    ....|++|+|+||||||+|+||+.+|+++ ++|||+|++||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l-~~fg~~v~~~d   79 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KAFGFNVLFYD   79 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEC
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeee-eccccceeecc
Confidence            58999999999999999999999999999864321    12357899999999999999999999997 79999999999


Q ss_pred             CChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      ++........               .......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++
T Consensus        80 ~~~~~~~~~~---------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~i  144 (193)
T d1mx3a1          80 PYLSDGVERA---------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL  144 (193)
T ss_dssp             TTSCTTHHHH---------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             Ccccccchhh---------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceE
Confidence            9765422211               0123457899999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHcCCcceEEeeccCCCCCC--CCCCCCCCCeEEcCCCCC
Q 016620          277 IDEVALVEHLKQNPMFRVGLDVFEDEPYM--KPGLSEMKNAIVVPHIAS  323 (386)
Q Consensus       277 vde~aL~~aL~~g~i~gaalDV~~~EP~~--~~~L~~~~nvilTPHia~  323 (386)
                      ||++||+++|++|++.+|++|||++||++  ++||+++|||++|||+|+
T Consensus       145 vde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         145 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            99999999999999999999999999986  368999999999999986

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=3.9e-49  Score=357.26  Aligned_cols=184  Identities=32%  Similarity=0.469  Sum_probs=164.4

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       120 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      .++||||+++++|++.|++..+++.+++|.|..+  ..+.|++|.|+||||||+|+||+.+|+++ ++|||+|++||++.
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~--~~~~~~~l~~ktvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   78 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKA--GTFIGKELGQQTVGVMGTGHIGQVAIKLF-KGFGAKVIAYDPYP   78 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHH--TCCCCCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcc--cCcccccccceeeeeeecccccccccccc-cccceeeeccCCcc
Confidence            4689999999999999999999999999998532  22467899999999999999999999997 79999999999976


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016620          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde  279 (386)
                      ....               .   ......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||+
T Consensus        79 ~~~~---------------~---~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde  140 (199)
T d1dxya1          79 MKGD---------------H---PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT  140 (199)
T ss_dssp             CSSC---------------C---TTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred             chhh---------------h---cchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhh
Confidence            4310               0   012356899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcceEEeeccCCCCCC----------C----CCCCCCCCeEEcCCCCCC
Q 016620          280 VALVEHLKQNPMFRVGLDVFEDEPYM----------K----PGLSEMKNAIVVPHIASA  324 (386)
Q Consensus       280 ~aL~~aL~~g~i~gaalDV~~~EP~~----------~----~~L~~~~nvilTPHia~~  324 (386)
                      +||+++|++|+|.||+||||++||++          +    ++|+++|||++|||+|||
T Consensus       141 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         141 QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             HHHHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            99999999999999999999999962          1    368899999999999996

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=2.3e-48  Score=349.42  Aligned_cols=186  Identities=26%  Similarity=0.323  Sum_probs=165.1

Q ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       122 ~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +||||+++++|++.|++..+++.+++|.|+.+. ....++++.|++|||+|+|.||+.+|+++ ++|||+|++||+....
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~~~~   79 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD-CVSHAYDLEAMHVGTVAAGRIGLAVLRRL-APFDVHLHYTDRHRLP   79 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-HHTTCCCCTTCEEEEECCSHHHHHHHHHH-GGGTCEEEEECSSCCC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcc-cCCcceeccccceeeccccccchhhhhhh-hccCceEEEEeecccc
Confidence            799999999999999999999999999985332 22346789999999999999999999997 7999999999987543


Q ss_pred             HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHH
Q 016620          202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  281 (386)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~a  281 (386)
                      ......              .......+++|++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++|
T Consensus        80 ~~~~~~--------------~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~a  145 (188)
T d2naca1          80 ESVEKE--------------LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDA  145 (188)
T ss_dssp             HHHHHH--------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             cccccc--------------ccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHH
Confidence            221100              012345799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCcceEEeeccCCCCCCC-CCCCCCCCeEEcCCCCC
Q 016620          282 LVEHLKQNPMFRVGLDVFEDEPYMK-PGLSEMKNAIVVPHIAS  323 (386)
Q Consensus       282 L~~aL~~g~i~gaalDV~~~EP~~~-~~L~~~~nvilTPHia~  323 (386)
                      |+++|++|++.+|+||||++||++. +|||++||+++|||+||
T Consensus       146 L~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         146 VARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             HHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             HHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            9999999999999999999999975 68999999999999997

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=1.8e-48  Score=351.87  Aligned_cols=182  Identities=35%  Similarity=0.555  Sum_probs=163.8

Q ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       121 ~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ++||||+++++|++.|++..+++.+++|.|. |.+  ..|++|+|+||||||+|.||+.+|+++ ++|||+|++||++..
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~-w~~--~~g~el~gk~vgIiG~G~IG~~va~~l-~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRN   77 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCC-cCC--CcCccccCCeEEEecccccchhHHHhH-hhhcccccccCcccc
Confidence            6899999999999999999999999999885 755  467999999999999999999999997 799999999998865


Q ss_pred             hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHH
Q 016620          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (386)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~  280 (386)
                      .....           .      .....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++
T Consensus        78 ~~~~~-----------~------~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~  140 (197)
T d1j4aa1          78 PELEK-----------K------GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD  140 (197)
T ss_dssp             HHHHH-----------T------TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHH
T ss_pred             ccccc-----------c------eeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhH
Confidence            43211           0      123578999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCcceEEeeccCCCCCCC--------------CCCCCCCCeEEcCCCCC
Q 016620          281 ALVEHLKQNPMFRVGLDVFEDEPYMK--------------PGLSEMKNAIVVPHIAS  323 (386)
Q Consensus       281 aL~~aL~~g~i~gaalDV~~~EP~~~--------------~~L~~~~nvilTPHia~  323 (386)
                      ||+++|++|++.+|++|||++||...              ++||++|||++|||+|+
T Consensus       141 aL~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         141 AVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             HHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             HHHHHHhcccchheeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            99999999999999999999997421              25899999999999986

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.8e-48  Score=345.25  Aligned_cols=183  Identities=27%  Similarity=0.428  Sum_probs=156.7

Q ss_pred             CchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       119 ~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      |+++||||+++++|++.|+++.+++.++++.|..+   ...++++.|++|||+|+|.||+.+|+++ ++|||+|++||++
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~---~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~   76 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL---AAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIE   76 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCccc---ccccccccceEEEEeecccchhhhhhhc-ccccceEeecccc
Confidence            67899999999999999999999999999987543   2356789999999999999999999997 7999999999986


Q ss_pred             hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (386)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd  278 (386)
                      ....                  ........+++|++++||+|++|+|+|++|+++||++.|++||++++|||+|||++||
T Consensus        77 ~~~~------------------~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1          77 NKLP------------------LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             CCCC------------------CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBC
T ss_pred             ccch------------------hhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhh
Confidence            5431                  0112345789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCcceEEeeccCCCCCCC-----CCCCCCCCeEEcCCCCC
Q 016620          279 EVALVEHLKQNPMFRVGLDVFEDEPYMK-----PGLSEMKNAIVVPHIAS  323 (386)
Q Consensus       279 e~aL~~aL~~g~i~gaalDV~~~EP~~~-----~~L~~~~nvilTPHia~  323 (386)
                      ++||+++|++|++.+|++|||++||...     +||+++|||++|||+||
T Consensus       139 e~aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         139 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             HHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             hHHHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            9999999999999999999999999842     37999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=2.9e-47  Score=339.81  Aligned_cols=179  Identities=28%  Similarity=0.452  Sum_probs=160.3

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       120 ~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +++||||+++++|++.|++..+++.+++|.|....    ...++.|++|||+|+|.||+.+|+++ ++|||+|++|||+.
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~----~~~~l~gk~vgIiG~G~IG~~va~~l-~~~g~~v~~~d~~~   75 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGEIGTRVGKIL-AALGAQVRGFSRTP   75 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCSTHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCcccCceEEEeccccccccceeee-eccccccccccccc
Confidence            57899999999999999999999999999885321    22469999999999999999999997 79999999999976


Q ss_pred             hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCH
Q 016620          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde  279 (386)
                      ...                    ......+++|++++||+|++|+|+|++|+++||++.|++||++++|||+|||++||+
T Consensus        76 ~~~--------------------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~  135 (181)
T d1qp8a1          76 KEG--------------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR  135 (181)
T ss_dssp             CCS--------------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH
T ss_pred             ccc--------------------ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccc
Confidence            431                    012346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcceEEeeccCCCC-CCC-CCCCCCCCeEEcCCCCC
Q 016620          280 VALVEHLKQNPMFRVGLDVFEDEP-YMK-PGLSEMKNAIVVPHIAS  323 (386)
Q Consensus       280 ~aL~~aL~~g~i~gaalDV~~~EP-~~~-~~L~~~~nvilTPHia~  323 (386)
                      +||+++|++|++.+|++|||+.|| ++. +||+++|||++|||+||
T Consensus       136 ~aL~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         136 DGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             HHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             hhhhhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence            999999999999999999998664 443 58999999999999997

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=1.7e-23  Score=175.60  Aligned_cols=128  Identities=22%  Similarity=0.288  Sum_probs=110.7

Q ss_pred             CCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        14 ~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      +|+|||++.+++++. .+.|++. +++++...    .+++|+.+.+. ++|++++...+++++++++++|+|  |+|++.
T Consensus         1 sMpkvli~~~~~~~~-~~~L~~~-~~v~~~~~----~~~~el~~~~~-~~d~ii~~~~~~i~~~~l~~~p~L--k~I~~~   71 (130)
T d1ygya2           1 SLPVVLIADKLAPST-VAALGDQ-VEVRWVDG----PDRDKLLAAVP-EADALLVRSATTVDAEVLAAAPKL--KIVARA   71 (130)
T ss_dssp             CCCEEEECSSCCGGG-GTTSCSS-SEEEECCT----TSHHHHHHHGG-GCSEEEECSSSCBCHHHHHTCTTC--CEEEES
T ss_pred             CCCEEEEECCCCHHH-HHHHhCC-cEEEECCC----CCHHHHHHHcC-CCEEEEEcCcccchHHHHhhcccc--eEEeee
Confidence            588999999888754 5666554 46654322    47889999887 599999988889999999999998  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCcc
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~  150 (386)
                      |+|+|+||+++|+++||.|+|+|++++.+|||+++++||++.|++..+.+++|+|.|
T Consensus        72 g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          72 GVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             cccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            999999999999999999999999999999999999999999999888777777764

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.4e-20  Score=157.83  Aligned_cols=118  Identities=20%  Similarity=0.136  Sum_probs=100.0

Q ss_pred             CCCcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEE
Q 016620           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (386)
Q Consensus        13 ~~~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~   92 (386)
                      ..|||||++.+++++. ++.|++.|+......  +..++++++.+.+. ++|++++...+++++++++++|+|  |+|++
T Consensus         2 k~kmKILv~d~i~~~a-~~~L~~~g~~~v~~~--~~~~~~~~l~~~~~-~~d~ii~~~~~~i~~~~i~~~p~L--k~I~~   75 (132)
T d1sc6a2           2 KDKIKFLLVEGVHQKA-LESLRAAGYTNIEFH--KGALDDEQLKESIR-DAHFIGLRSRTHLTEDVINAAEKL--VAIGA   75 (132)
T ss_dssp             CSSCCEEECSCCCHHH-HHHHHHTTCCCEEEC--SSCCCHHHHHHHTT-SCSEEEECSSCCBCHHHHHHCSSC--CEEEE
T ss_pred             CCCCEEEEECCCCHHH-HHHHHhCCCEEEEeC--CCCCCHHHHHHhhc-CCcEEEEecccccChhhhhccccc--eeEEE
Confidence            5789999999998754 788988876543222  23468999999887 599999888889999999999998  99999


Q ss_pred             ccccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHh
Q 016620           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR  136 (386)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R  136 (386)
                      +|+||||||+++|+++||.|+|+|++++.+|||++++||++..|
T Consensus        76 ~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~  119 (132)
T d1sc6a2          76 FAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLI  119 (132)
T ss_dssp             CSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHH
T ss_pred             ecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999987666654444

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.82  E-value=5.4e-21  Score=160.31  Aligned_cols=121  Identities=16%  Similarity=0.229  Sum_probs=95.9

Q ss_pred             cEEEEeCCCCc-hHHHHH-HHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEc
Q 016620           16 YRVVSTKPMPG-TRWINL-LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (386)
Q Consensus        16 ~~vlvt~~~~~-~~~~~~-l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~   93 (386)
                      |||++....+. .++++. .+.+++++......    ..++..+.+. ++|++++....++++++++++++.++|+|+++
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~----~~~~~~~~~~-~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~   75 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEF----LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR   75 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSC----CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCC----CCHHHHHHhc-CCCEEEEecCCCCCHHHHhhcccCCeEEEEEc
Confidence            67877543332 233444 45567777653332    2345555554 69999988888999999999997777999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHH
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~  141 (386)
                      |+|+||||+++|+++||+|+|+|++++++|||++++++|++.|++..+
T Consensus        76 ~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~  123 (131)
T d1dxya2          76 NVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKG  123 (131)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHH
Confidence            999999999999999999999999999999999999999999988654

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.80  E-value=2.4e-19  Score=149.75  Aligned_cols=116  Identities=20%  Similarity=0.351  Sum_probs=97.9

Q ss_pred             CcEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhh-ccCCcEEEEc
Q 016620           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALS-RAGGKAFSNM   93 (386)
Q Consensus        15 ~~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~-~l~~k~i~~~   93 (386)
                      |.|||++.+++++ .++.+++. +++.. ...+..++.+|+.+.+. ++|++++....+++++++++++ +|  |+|++.
T Consensus         1 K~kVlit~~~~~~-~~~~l~~~-~~v~~-~~~~~~~s~~el~~~~~-~~d~ii~~~~~~i~~~~l~~~~~~L--K~I~~~   74 (129)
T d1gdha2           1 KKKILITWPLPEA-AMARARES-YDVIA-HGDDPKITIDEMIETAK-SVDALLITLNEKCRKEVIDRIPENI--KCISTY   74 (129)
T ss_dssp             CCEEEESSCCCHH-HHHHHHTT-SEEEE-CCSTTCCCHHHHHHHHT-TCSEEEEETTSCBCHHHHHHSCTTC--CEEEEE
T ss_pred             CCEEEEeCCCCHH-HHHHHHcC-CcEEE-eCCCCCCCHHHHHHHhc-CCCEEEEcCCchhhhHHHhhhhhcc--eeeeec
Confidence            5789999999875 47788765 46654 34445679999999987 5999998888899999999997 56  999999


Q ss_pred             cccccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHh
Q 016620           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR  136 (386)
Q Consensus        94 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R  136 (386)
                      |+|+||||+++|+++||+|+|+||+++.+|||+++++|+.+.+
T Consensus        75 gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          75 SIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987765555554

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.80  E-value=1.1e-21  Score=162.14  Aligned_cols=121  Identities=10%  Similarity=0.076  Sum_probs=100.0

Q ss_pred             cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      |||+++.++|++ ..+.+++.. ++  ....+.            .++|+++++   +++++.++++|+|  |+|++.|+
T Consensus         1 Mki~v~~~lp~e-~~e~L~~~~-~v--~~~~d~------------~~~d~~l~~---~~~~~~l~~~~~L--k~i~~~~a   59 (121)
T d1qp8a2           1 MELYVNFELPPE-AEEELRKYF-KI--VRGGDL------------GNVEAALVS---RITAEELAKMPRL--KFIQVVTA   59 (121)
T ss_dssp             CEEECCSCCCHH-HHHHHHTTC-EE--ECSSCC------------TTBCCCCBS---CCCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEeCCCCHH-HHHHhhhcc-eE--eecccc------------cccceeeee---ccCHHHHhcCCCc--eEEEeccc
Confidence            799999999974 467776643 33  222221            247776654   6889999999998  99999999


Q ss_pred             cccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecCh
Q 016620           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (386)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~  175 (386)
                      |+||+|++.++ +||.|+|++|+++.+||||+++++|++.|+                              ++|+|+|.
T Consensus        60 G~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~------------------------------l~i~G~G~  108 (121)
T d1qp8a2          60 GLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN------------------------------LITYATGG  108 (121)
T ss_dssp             CCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH------------------------------HHHHHTTS
T ss_pred             CcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC------------------------------EEEEcCCH
Confidence            99999999885 699999999999999999999999999983                              57899999


Q ss_pred             hHHHHHHHHHhcCC
Q 016620          176 IGSAYARMMVEGFK  189 (386)
Q Consensus       176 IG~~iA~~L~~~fg  189 (386)
                      ||+++|+|+ ++||
T Consensus       109 iG~~iA~r~-~a~G  121 (121)
T d1qp8a2         109 RPRNIAKRE-DYIG  121 (121)
T ss_dssp             CCSCBCCGG-GTC-
T ss_pred             HHHHHHHHH-HhcC
Confidence            999999995 8987

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.76  E-value=3.4e-19  Score=155.15  Aligned_cols=117  Identities=15%  Similarity=0.084  Sum_probs=101.4

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecC--CccccHHHHHHhhccCCcEEEEccccccccChhHHh
Q 016620           29 WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (386)
Q Consensus        29 ~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~--~~~~~~~~l~~l~~l~~k~i~~~~~G~d~id~~~~~  106 (386)
                      +.++|++.|+++.+....+  .+.+++.+.+. ++|++++.+  ...++++.++++|+|  |+|++.|+|+||||+++|+
T Consensus        59 lr~~Le~~GhelV~~sd~~--~~~~el~k~l~-DADivI~~pf~~~~lt~e~i~~ap~L--KlI~~~g~G~D~VDl~aa~  133 (186)
T d2naca2          59 LRKYLESNGHTLVVTSDKD--GPDSVFERELV-DADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAI  133 (186)
T ss_dssp             CHHHHHHTTCEEEEESCCS--STTSHHHHHHT-TCSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHH
T ss_pred             HHHHHHHCCCEEEEecCCC--CChHHHHhhcc-cCCEEEEecccccccCHHHHhcCccc--eEEEEeccCCccccHHHHH
Confidence            4688999999997765554  35667888887 599999974  578999999999998  9999999999999999999


Q ss_pred             hCCcEEecCCCCCchhHHHHH--------HHHHHHHHhchHHHHHHHHcCcc
Q 016620          107 KYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIVEADEFMRAGLY  150 (386)
Q Consensus       107 ~~gI~v~n~~~~~~~~vAE~a--------l~~~L~~~R~~~~~~~~~~~~~~  150 (386)
                      ++||.|+|+||+|+.+||||+        +++++...|++...+..+++|+|
T Consensus       134 e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         134 DRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             HTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             hCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            999999999999999999999        77888888988877777777765

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.73  E-value=3.7e-18  Score=143.30  Aligned_cols=125  Identities=20%  Similarity=0.208  Sum_probs=95.0

Q ss_pred             EEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           17 RVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        17 ~vlvt~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      ||++=...+ +..+++.+.+..+++++...+. .++ +|+.+.+. ++|++++....+++++++++++++++|+|+++|+
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~-~~~-~e~~~~~~-~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK-LLT-PETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECSS-CCC-TTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECCC-CCC-HHHHHHhc-CCCEEEEecCCCcCHHHHhhhcccCeeEEEEccC
Confidence            666633332 2335666655555665544443 234 45666555 6999999888899999999999878899999999


Q ss_pred             cccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCcc
Q 016620           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (386)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~~~~~~~~~  150 (386)
                      |+||||+++|+++||.|+|+|++   ++||+++++||++.|++..   .+.+|.|
T Consensus        79 G~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~---~~~~~k~  127 (134)
T d1j4aa2          79 GVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL---ELVEGKE  127 (134)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH---HHHTTCC
T ss_pred             CcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH---HHhhhhc
Confidence            99999999999999999999997   5799999999999998643   3444543

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.71  E-value=4.9e-18  Score=142.06  Aligned_cols=119  Identities=20%  Similarity=0.248  Sum_probs=90.7

Q ss_pred             cEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcCCCcEEEecCCccccHHHHHHhhccCCcEEEEccc
Q 016620           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (386)
Q Consensus        16 ~~vlvt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ad~vi~~~~~~~~~~~l~~l~~l~~k~i~~~~~   95 (386)
                      ++|++....+....+..|++.+ ++.++...    +.+|+.+.+.++++++++....++++++++++|+|  |+|++.|+
T Consensus         2 P~v~~ld~~d~~~e~~~L~~~~-~v~~~~~~----s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~L--k~I~~~g~   74 (133)
T d1mx3a2           2 PLVALLDGRDCTVEMPILKDVA-TVAFCDAQ----STQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RIIVRIGS   74 (133)
T ss_dssp             CEEEESSCSCCTTTHHHHTTTC-EEEECCCS----SGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEEEESSS
T ss_pred             CEEEEecCCcchhhHHHhcccc-eEEEecCC----ChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCC--eEEEEcCC
Confidence            3455544333222356776653 55443222    34444443333588888888889999999999988  99999999


Q ss_pred             cccccChhHHhhCCcEEecCCCCCchhHHHHHHHHHHHHHhchHHHH
Q 016620           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD  142 (386)
Q Consensus        96 G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al~~~L~~~R~~~~~~  142 (386)
                      |+||||+++|+++||.|+|+|++++ ++||++++++|++.|+++++.
T Consensus        75 G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~  120 (133)
T d1mx3a2          75 GFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAI  120 (133)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHH
Confidence            9999999999999999999999987 579999999999999998654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.6e-17  Score=139.85  Aligned_cols=120  Identities=22%  Similarity=0.352  Sum_probs=98.0

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      +..+.||+++|+|||.||+.+|+++ ++|||+|++||+++...+++..+.|               ...++++++..+|+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~-rg~G~~V~v~e~dp~~al~A~~dG~---------------~v~~~~~a~~~adi   82 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAMEGY---------------EVTTMDEACQEGNI   82 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTC---------------EECCHHHHTTTCSE
T ss_pred             CceecCCEEEEeccccccHHHHHHH-HhCCCeeEeeecccchhHHhhcCce---------------EeeehhhhhhhccE
Confidence            3579999999999999999999997 7999999999999988777655432               34689999999999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC-CcccCHHHHHHHHHcCCcceEEeecc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEHLKQNPMFRVGLDVF  299 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR-g~~vde~aL~~aL~~g~i~gaalDV~  299 (386)
                      |++++.    ++++|+.+.|++||+|+++.|++. ..-+|.++|.+...+.+.....+|.|
T Consensus        83 vvtaTG----n~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y  139 (163)
T d1li4a1          83 FVTTTG----CIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRY  139 (163)
T ss_dssp             EEECSS----CSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEE
T ss_pred             EEecCC----CccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEE
Confidence            998874    689999999999999999999975 55599999887554443333344443

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.48  E-value=8.2e-14  Score=118.77  Aligned_cols=103  Identities=20%  Similarity=0.309  Sum_probs=89.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ..+.||++.|+|||.+|+.+|+++ +++|++|++++..+-..+++.++.|               ...+++|+++.+|++
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~-rg~Ga~V~V~E~DPi~alqA~mdGf---------------~v~~~~~a~~~aDi~   82 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAVMEGF---------------NVVTLDEIVDKGDFF   82 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHTTTC---------------EECCHHHHTTTCSEE
T ss_pred             ceecCCEEEEecccccchhHHHHH-HhCCCEEEEEecCchhhHHHHhcCC---------------ccCchhHccccCcEE
Confidence            469999999999999999999997 8999999999999888777654432               347999999999999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-cCHHHHH
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALV  283 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-vde~aL~  283 (386)
                      +.++..    .++|+.+.|.+||+|+++.|+++... +|.++|.
T Consensus        83 vTaTGn----~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~  122 (163)
T d1v8ba1          83 ITCTGN----VDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELF  122 (163)
T ss_dssp             EECCSS----SSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred             EEcCCC----CccccHHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence            999964    67999999999999999999999765 6655554

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.36  E-value=9.7e-13  Score=112.82  Aligned_cols=113  Identities=18%  Similarity=0.188  Sum_probs=91.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+++|++|+ ..|.+|++||+++.... .+        ...+     .....+..|++++||+|++|+|
T Consensus         1 MkIgiIGlG~MG~~~A~~L~-~~G~~V~~~d~~~~~~~-~~--------~~~~-----~~~~~~~~e~~~~~d~ii~~v~   65 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLL-KAGYSLVVSDRNPEAIA-DV--------IAAG-----AETASTAKAIAEQCDVIITMLP   65 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHHH-HH--------HHTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEehhHHHHHHHHHHH-HCCCeEEEEeCCcchhH-HH--------HHhh-----hhhcccHHHHHhCCCeEEEEcC
Confidence            47999999999999999984 68999999999876532 11        1111     2345789999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcce
Q 016620          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (386)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~g  293 (386)
                      ..++...++.  ...+..+++|.++||++....-....+.+.+++..+..
T Consensus        66 ~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~  115 (161)
T d1vpda2          66 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEM  115 (161)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred             CHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCce
Confidence            8888887763  35888899999999999999988899999998865443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.31  E-value=1.7e-11  Score=104.97  Aligned_cols=149  Identities=14%  Similarity=0.055  Sum_probs=95.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+++|+.| +..|.+|++|||+.......         .+.+..   .. ..+..+.+++||+|++++|
T Consensus         1 MkI~iIG~G~mG~~lA~~l-~~~g~~V~~~d~~~~~~~~a---------~~~~~~---~~-~~~~~~~~~~~DiIilavp   66 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTCEKA---------VERQLV---DE-AGQDLSLLQTAKIIFLCTP   66 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH---------HHTTSC---SE-EESCGGGGTTCSEEEECSC
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCEEEEEECCchHHHHH---------HHhhcc---ce-eeeecccccccccccccCc
Confidence            5799999999999999998 57899999999986543211         111211   11 1233467899999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC-CC-CCCCCCCCCCeEEcCCCCC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-PY-MKPGLSEMKNAIVVPHIAS  323 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~E-P~-~~~~L~~~~nvilTPHia~  323 (386)
                      . ..+..++ .+....+++++++++++.......... ..+...-+..-.+...+.. |. ..+.|+....+++||+-++
T Consensus        67 ~-~~~~~vl-~~l~~~l~~~~iv~~~~s~~~~~~~~~-~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~  143 (165)
T d2f1ka2          67 I-QLILPTL-EKLIPHLSPTAIVTDVASVKTAIAEPA-SQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYT  143 (165)
T ss_dssp             H-HHHHHHH-HHHGGGSCTTCEEEECCSCCHHHHHHH-HHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTC
T ss_pred             H-hhhhhhh-hhhhhhcccccceeeccccchHHHHHH-HHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCC
Confidence            5 3566666 567788999999999987654333333 3333332222222222111 11 1245778888999998654


Q ss_pred             CcHHHHHHH
Q 016620          324 ASKWTREGM  332 (386)
Q Consensus       324 ~t~~~~~~~  332 (386)
                       +.+..+.+
T Consensus       144 -~~~~~~~v  151 (165)
T d2f1ka2         144 -DPEQLACL  151 (165)
T ss_dssp             -CHHHHHHH
T ss_pred             -CHHHHHHH
Confidence             44444433

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.30  E-value=1.8e-11  Score=105.25  Aligned_cols=152  Identities=18%  Similarity=0.142  Sum_probs=100.5

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHH-HhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e-ll~~aDiVvl~  243 (386)
                      ++|+|||+|.||.++|+.|++ ++..+|++||++.......         ...+...   ....+.++ ....+|+|++|
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a---------~~~~~~~---~~~~~~~~~~~~~~dlIila   69 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKA---------VDLGIID---EGTTSIAKVEDFSPDFVMLS   69 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH---------HHTTSCS---EEESCGGGGGGTCCSEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHH---------HHhhcch---hhhhhhhhhhcccccccccc
Confidence            479999999999999999842 2446899999987653221         1112111   11233333 33579999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCC-CC-CCCCCCCCCCeEEcCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDE-PY-MKPGLSEMKNAIVVPHI  321 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~E-P~-~~~~L~~~~nvilTPHi  321 (386)
                      +|. .++..++ ++....+++++++++++.....-.+++.+.+...-+.+--+...+.. |. ..+.|++..++++|||-
T Consensus        70 ~p~-~~~~~vl-~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~  147 (171)
T d2g5ca2          70 SPV-RTFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTK  147 (171)
T ss_dssp             SCH-HHHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGGCCSSTTTTCEEEECCCS
T ss_pred             CCc-hhhhhhh-hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHHHHHHhhCCCeEEEecCC
Confidence            994 3344554 55677899999999999977666667777776655555555554433 22 23468999999999986


Q ss_pred             CCCcHHHHHHH
Q 016620          322 ASASKWTREGM  332 (386)
Q Consensus       322 a~~t~~~~~~~  332 (386)
                      . .+.+..+.+
T Consensus       148 ~-~~~~~~~~v  157 (171)
T d2g5ca2         148 K-TDKKRLKLV  157 (171)
T ss_dssp             S-SCHHHHHHH
T ss_pred             C-CCHHHHHHH
Confidence            5 344444433

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.22  E-value=2.5e-11  Score=103.95  Aligned_cols=112  Identities=20%  Similarity=0.227  Sum_probs=90.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||.++|++|+ .-|.+|.+||++......         +...+     .....++.|++..+|+|++|+|
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~-~~g~~v~~~d~~~~~~~~---------~~~~~-----~~~~~~~~e~~~~~diii~~v~   66 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLL-KAGYLLNVFDLVQSAVDG---------LVAAG-----ASAARSARDAVQGADVVISMLP   66 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSSHHHHHH---------HHHTT-----CEECSSHHHHHTSCSEEEECCS
T ss_pred             CEEEEEEEHHHHHHHHHHHH-HCCCeEEEEECchhhhhh---------hhhhh-----ccccchhhhhccccCeeeeccc
Confidence            57999999999999999985 679999999998765321         11111     2235688999999999999999


Q ss_pred             CChhhhhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       246 lt~~t~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ..+..+.++.  ...+..+++|.++||++....-+...+.+.+++..+.
T Consensus        67 ~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~  115 (162)
T d3cuma2          67 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA  115 (162)
T ss_dssp             CHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             chhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc
Confidence            8877776653  4477889999999999999999999999999886543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.10  E-value=1.3e-10  Score=100.70  Aligned_cols=116  Identities=13%  Similarity=0.170  Sum_probs=89.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC---ccccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP---VTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|||||+|.||.+||++|+ .-|.+|++|||+++... .+.+        .+...   .......++.+.+..+|++++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~-~~G~~V~v~dr~~~~~~-~l~~--------~~~~~~~~~~a~~~~~~~~~~~~~~~ii~   72 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMN-DHGFVVCAFNRTVSKVD-DFLA--------NEAKGTKVLGAHSLEEMVSKLKKPRRIIL   72 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSTHHHH-HHHH--------TTTTTSSCEECSSHHHHHHHBCSSCEEEE
T ss_pred             CcEEEEeEhHHHHHHHHHHH-HCCCeEEEEcCCHHHHH-HHHH--------hccccccccchhhhhhhhhhhcccceEEE
Confidence            57999999999999999985 57899999999886532 2111        11111   112223456677888999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++|..+.....+ ...+..+++|.++||++....-+...+.+.+....+.
T Consensus        73 ~~~~~~~v~~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~  121 (176)
T d2pgda2          73 LVKAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (176)
T ss_dssp             CSCTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             ecCchHHHHHHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc
Confidence            999888877765 5688899999999999999999999999999876433

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.82  E-value=4.6e-09  Score=88.83  Aligned_cols=110  Identities=18%  Similarity=0.197  Sum_probs=80.3

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPl  246 (386)
                      +|||||+|.||..||++|. ..|..+ +|+++..+..+. .+       ..+       ...+..+.+.++|++++++|.
T Consensus         2 kIg~IGlG~MG~~ma~~L~-~~g~~~-~~~~~~~~~~~~-~~-------~~~-------~~~~~~~~~~~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLA-RRFPTL-VWNRTFEKALRH-QE-------EFG-------SEAVPLERVAEARVIFTCLPT   64 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHH-TTSCEE-EECSSTHHHHHH-HH-------HHC-------CEECCGGGGGGCSEEEECCSS
T ss_pred             eEEEEeHHHHHHHHHHHHH-hCCCEE-EEeCCHHHHHHH-HH-------HcC-------CcccccccccceeEEEecccc
Confidence            6999999999999999985 456655 566655443221 11       111       112334566789999999998


Q ss_pred             ChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceE
Q 016620          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (386)
Q Consensus       247 t~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~ga  294 (386)
                      ..+.... ....+..++++.++||+++...-....+.+.+++..+...
T Consensus        65 ~~~v~~~-~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~l  111 (156)
T d2cvza2          65 TREVYEV-AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYL  111 (156)
T ss_dssp             HHHHHHH-HHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             hhhhhhh-hccccccccccccccccccCCHHHHHHHHHHHHHcCCeEE
Confidence            7665554 4578899999999999999999999999999997654433

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.81  E-value=3.5e-09  Score=89.16  Aligned_cols=105  Identities=10%  Similarity=0.012  Sum_probs=74.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|.||+.+|+.|+ .-|.+|++||+............              .....+.+|++.+||+|++|+|
T Consensus         1 MkIgiIG~G~mG~~ia~~l~-~~g~~v~~~~~~~~~~~~~~~~~--------------~~~~~~~~e~~~~~diIi~~v~   65 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLR-SRGVEVVTSLEGRSPSTIERART--------------VGVTETSEEDVYSCPVVISAVT   65 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHH-HTTCEEEECCTTCCHHHHHHHHH--------------HTCEECCHHHHHTSSEEEECSC
T ss_pred             CEEEEEcHHHHHHHHHHHHH-HCCCeEEEEcCchhHHHHHhhhc--------------ccccccHHHHHhhcCeEEEEec
Confidence            47999999999999999984 67899999997765543221111              1123578899999999999999


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      .... ...+ .+...  ..+.++|+++.........+.+.+++.
T Consensus        66 ~~~~-~~~~-~~~~~--~~~~~~id~st~~p~~~~~l~~~~~~~  105 (152)
T d1i36a2          66 PGVA-LGAA-RRAGR--HVRGIYVDINNISPETVRMASSLIEKG  105 (152)
T ss_dssp             GGGH-HHHH-HHHHT--TCCSEEEECSCCCHHHHHHHHHHCSSS
T ss_pred             CchH-HHHH-Hhhcc--cCCceeeccCcCCHHHHHHHHHHHhcc
Confidence            6433 3322 22222  236789999998877778888777654

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.80  E-value=4.7e-09  Score=88.13  Aligned_cols=84  Identities=13%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ..-++|+||| +|.||+++|+.| +..|.+|.+||++...                           ..++.+..+|+++
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L-~~~G~~V~~~d~~~~~---------------------------~~~~~~~~~~~v~   58 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDWA---------------------------VAESILANADVVI   58 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCGG---------------------------GHHHHHTTCSEEE
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHH-HHcCCCcEeccccccc---------------------------ccchhhhhccccc
Confidence            4557999999 999999999998 5789999999986543                           3356678999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      +++|.. . ...+-.+.+..++++++++|++.-..
T Consensus        59 ~~~~~~-~-~~~v~~~~~~~~~~~~iiiD~~Svk~   91 (152)
T d2pv7a2          59 VSVPIN-L-TLETIERLKPYLTENMLLADLTSVKR   91 (152)
T ss_dssp             ECSCGG-G-HHHHHHHHGGGCCTTSEEEECCSCCH
T ss_pred             cccchh-h-heeeeecccccccCCceEEEecccCH
Confidence            999953 3 33344778889999999999998554

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.74  E-value=5.2e-08  Score=81.92  Aligned_cols=101  Identities=17%  Similarity=0.242  Sum_probs=75.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|+||+++++.| ..-|.++++|+|+.+... +..+.       .+     .....+.++++++||+|++|++
T Consensus         1 MkIg~IG~G~mG~al~~~l-~~~~~~i~v~~r~~~~~~-~l~~~-------~g-----~~~~~~~~~~~~~~dvIilavk   66 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERSK-EIAEQ-------LA-----LPYAMSHQDLIDQVDLVILGIK   66 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHHH-HHHHH-------HT-----CCBCSSHHHHHHTCSEEEECSC
T ss_pred             CEEEEEeccHHHHHHHHHH-HhCCCeEEEEcChHHhHH-hhccc-------cc-----eeeechhhhhhhccceeeeecc
Confidence            4799999999999999998 466889999999865432 21111       12     2234689999999999999996


Q ss_pred             CChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 016620          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~  288 (386)
                        |+..    ++.++.++++.++|+++-|  +..+.|.+.+..
T Consensus        67 --p~~~----~~vl~~l~~~~~iis~~ag--i~~~~l~~~l~~  101 (152)
T d2ahra2          67 --PQLF----ETVLKPLHFKQPIISMAAG--ISLQRLATFVGQ  101 (152)
T ss_dssp             --GGGH----HHHHTTSCCCSCEEECCTT--CCHHHHHHHHCT
T ss_pred             --hHhH----HHHhhhcccceeEeccccc--ccHHHHHhhhcc
Confidence              3321    5677889999999999876  456667777754

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.72  E-value=2.1e-08  Score=86.24  Aligned_cols=127  Identities=17%  Similarity=0.205  Sum_probs=89.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH---HHhhhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD---EVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---ell~~aDiVvl  242 (386)
                      ++|||||+|.||.++|++|+ .-|.+|++|||+++...+ +.+....    .. .........+.+   ..+..++.+.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~-~~G~~V~~~dr~~~~~~~-l~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIA-EKGFKVAVFNRTYSKSEE-FMKANAS----AP-FAGNLKAFETMEAFAASLKKPRKALI   74 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHHHH-HHHHTTT----ST-TGGGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEeehHHHHHHHHHHH-HCCCeEEEEECCHHHHHH-HHHcCCc----cc-cccchhhhhhhhHHHHhcccceEEEE
Confidence            57999999999999999985 679999999998765322 2111100    00 000111123333   34568899999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      +++........+ ......++++.++||++....-+...+.+.|.+..+...-.-|+.
T Consensus        75 ~~~~~~~~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g  131 (178)
T d1pgja2          75 LVQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISG  131 (178)
T ss_dssp             CCCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEES
T ss_pred             eecCcchhhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccC
Confidence            998777666665 456777899999999999999999999999987766555444444

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.68  E-value=3e-08  Score=84.45  Aligned_cols=103  Identities=17%  Similarity=0.333  Sum_probs=75.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      +.-.+|.|||.|..|.+-++.+ +++|++|.++|.+.... ++....|.....      ........+++.+++||+|+.
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A-~~lGA~V~~~D~~~~~l-~~l~~~~~~~~~------~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMA-VGLGAQVQIFDINVERL-SYLETLFGSRVE------LLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHHGGGSE------EEECCHHHHHHHHHTCSEEEE
T ss_pred             CCCcEEEEECCChHHHHHHHHH-hhCCCEEEEEeCcHHHH-HHHHHhhcccce------eehhhhhhHHHhhccCcEEEE
Confidence            5668899999999999999984 79999999999987542 222222211111      001112357888999999988


Q ss_pred             ccC-CChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          243 HPV-LDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lP-lt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ++- -...+-.+|.++.++.||+|+++||++=
T Consensus       102 aalipG~~aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         102 AVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             eeecCCcccCeeecHHHHhhcCCCcEEEEeec
Confidence            753 2345678999999999999999999953

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.55  E-value=3.1e-07  Score=78.31  Aligned_cols=121  Identities=15%  Similarity=0.189  Sum_probs=77.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhh-hcCCC--CccccccCCHHHHhhhCCEEE
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQ--PVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .||++|||.|.+|..+|..|+ ..|.+|.+|||+.... +..... ..... ..+..  ........+++|.+++||+|+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~-~~G~~V~~~~r~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~ii   77 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLA-LKGQSVLAWDIDAQRI-KEIQDR-GAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVIL   77 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHHH-TSEEEESSSCCEEECCSEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECccHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHHHc-CCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEE
Confidence            479999999999999999985 6899999999976432 211110 00000 00000  001112367899999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      +++|.. .+..++ ++.-..++++.+++-. -|....+..+.+.+.....
T Consensus        78 i~v~~~-~~~~~~-~~i~~~l~~~~~iv~~-~g~~~~~~~~~~~~~~~~~  124 (184)
T d1bg6a2          78 IVVPAI-HHASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRENGA  124 (184)
T ss_dssp             ECSCGG-GHHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHHTTC
T ss_pred             EEEchh-HHHHHH-HHhhhccCCCCEEEEe-CCCCccHHHHHHHHHHhcC
Confidence            999853 344443 5566788999988744 4444455556667765543

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.42  E-value=1.4e-07  Score=79.89  Aligned_cols=98  Identities=15%  Similarity=0.232  Sum_probs=68.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+.+++|.|||+|.||+.+++.| ...|+ ++.+++|+..... .....       .+   ..+..+.++.+.+.++|+|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L-~~~g~~~i~v~nRt~~ka~-~l~~~-------~~---~~~~~~~~~~~~l~~~Div   88 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERAV-ELARD-------LG---GEAVRFDELVDHLARSDVV   88 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHHH-HHHHH-------HT---CEECCGGGHHHHHHTCSEE
T ss_pred             CcccCeEEEECCCHHHHHHHHHH-HhcCCcEEEEEcCcHHHHH-HHHHh-------hh---cccccchhHHHHhccCCEE
Confidence            48999999999999999999998 46787 6999999865432 11111       11   1223456888899999999


Q ss_pred             EEccCCChhhhhcccHHHHhcC------CCCcEEEEcCCC
Q 016620          241 SLHPVLDKTTYHLINKERLATM------KKEAILVNCSRG  274 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~m------k~gailIN~aRg  274 (386)
                      +.|++   ....+|+.+.++..      ++..++||.|..
T Consensus        89 i~ats---s~~~ii~~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2          89 VSATA---APHPVIHVDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             EECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             EEecC---CCCccccHhhhHHHHHhcccCCCeEEEeecCC
Confidence            99987   44667777766422      233467776543

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.38  E-value=2.4e-07  Score=73.72  Aligned_cols=96  Identities=13%  Similarity=0.120  Sum_probs=68.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      -+++|++|+|||.|.+|..-|+.| ..+|++|+++++...+....+.+        .  ....+....--++.+..+|+|
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~l-l~~ga~v~v~~~~~~~~~~~~~~--------~--~~i~~~~~~~~~~dl~~~~lv   76 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTVWAN--------E--GMLTLVEGPFDETLLDSCWLA   76 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHHHHT--------T--TSCEEEESSCCGGGGTTCSEE
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeccCChHHHHHHh--------c--CCceeeccCCCHHHhCCCcEE
Confidence            479999999999999999999998 58999999999887765443221        1  111121111113446789999


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      +.+...     ..+|.+....+|+..++||++
T Consensus        77 ~~at~d-----~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          77 IAATDD-----DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EECCSC-----HHHHHHHHHHHHHTTCEEEET
T ss_pred             eecCCC-----HHHHHHHHHHHHHcCCEEEeC
Confidence            888753     234667777788888999964

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.36  E-value=4.7e-07  Score=77.94  Aligned_cols=107  Identities=20%  Similarity=0.231  Sum_probs=70.1

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhh---c---CCC--------Cccc--cc
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA---N---GEQ--------PVTW--KR  226 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~---~---~~~--------~~~~--~~  226 (386)
                      +.-.+|.|||.|..|.+-++. ++++|++|.++|.+..... +....++..+.-   .   .+.        ...+  ..
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~-A~~lGA~V~v~D~~~~~~~-~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~  104 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIAT-AKRLGAVVMATDVRAATKE-QVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  104 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHH-HHHTTCEEEEECSCSTTHH-HHHHTTCEECCC-----------------------CCH
T ss_pred             cCCcEEEEEcCcHHHHHHHHH-HHHcCCEEEEEeccHHHHH-HHHHhhcceEEEeccccccccccccchhhcCHHHHHHH
Confidence            456789999999999999998 4899999999998765421 111111111100   0   000        0000  00


Q ss_pred             cCCHHHHhhhCCEEEEc--cCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          227 ASSMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       227 ~~~l~ell~~aDiVvl~--lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      ...+.+.+++||+|+.+  .|. ...-.+|+++.++.||+|+++||++
T Consensus       105 ~~~l~~~l~~aDlVI~talipG-~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         105 AEAVLKELVKTDIAITTALIPG-KPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTT-SCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHHHhhhhheeeeecCC-cccceeehHHHHHhcCCCcEEEEEe
Confidence            12345668899999876  443 2356789999999999999999985

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=1.3e-07  Score=79.07  Aligned_cols=88  Identities=11%  Similarity=0.107  Sum_probs=56.6

Q ss_pred             EEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCC
Q 016620          168 VGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (386)
Q Consensus       168 vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPl  246 (386)
                      |||||+|+||+++|+.| +. +.. +.+|+|+..... +..+        .+.     ....+++|++++||+|++|+|.
T Consensus         2 IgfIG~G~mg~~l~~~L-~~-~~~~~~v~~R~~~~~~-~l~~--------~~~-----~~~~~~~~~~~~~DiVil~v~d   65 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECL-KD-RYEIGYILSRSIDRAR-NLAE--------VYG-----GKAATLEKHPELNGVVFVIVPD   65 (153)
T ss_dssp             CEEESCCHHHHHHHHTT-C-----CCCEECSSHHHHH-HHHH--------HTC-----CCCCSSCCCCC---CEEECSCT
T ss_pred             EEEEeCcHHHHHHHHHH-Hh-CCCEEEEEeCChhhhc-chhh--------ccc-----ccccchhhhhccCcEEEEeccc
Confidence            79999999999999987 44 344 458999876532 2111        111     1245777889999999999995


Q ss_pred             ChhhhhcccHHHHhcC-CCCcEEEEcCCCccc
Q 016620          247 DKTTYHLINKERLATM-KKEAILVNCSRGPVI  277 (386)
Q Consensus       247 t~~t~~li~~~~~~~m-k~gailIN~aRg~~v  277 (386)
                      . +.     .+.+..+ +++.++|+++.+...
T Consensus        66 ~-~i-----~~v~~~l~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          66 R-YI-----KTVANHLNLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             T-TH-----HHHHTTTCCSSCCEEECCSSSCG
T ss_pred             h-hh-----hHHHhhhcccceeeeecccchhh
Confidence            3 22     3455556 478999999887653

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.4e-06  Score=74.34  Aligned_cols=131  Identities=14%  Similarity=0.119  Sum_probs=86.4

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCC-------------ccccccCCH
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQP-------------VTWKRASSM  230 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l  230 (386)
                      ++|+|||.|.||+.+|..++ ..|++|+.||++.....  .+..+..-..+.+.+...             .......++
T Consensus         5 kkvaViGaG~mG~~iA~~~a-~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~   83 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA   83 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCH
T ss_pred             EEEEEECcCHHHHHHHHHHH-hCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchh
Confidence            68999999999999999875 78999999999876421  111111100011111110             012235688


Q ss_pred             HHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       231 ~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      .+.+++||+|+=|+|-+-+.+.-+-.+.-+.++++++|...+.+-  ....|.+.+.. .=...++--|.
T Consensus        84 ~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~-p~r~ig~Hffn  150 (192)
T d1f0ya2          84 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTR-QDRFAGLHFFN  150 (192)
T ss_dssp             HHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEEECS
T ss_pred             HhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhhhccC-HhHEEeecccc
Confidence            899999999999999888777666677777789999886655533  34556665553 34566666553

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.28  E-value=5.8e-06  Score=72.35  Aligned_cols=107  Identities=22%  Similarity=0.277  Sum_probs=78.4

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hCCEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiV  240 (386)
                      +|.|+||+|.|+|++|+.+|+.| ...|++|+++|.+.......  .       ..+     . ...+.++++. .||++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L-~~~Gakvvv~d~d~~~~~~~--~-------~~g-----~-~~~~~~~~~~~~~DI~   87 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTERVAHA--V-------ALG-----H-TAVALEDVLSTPCDVF   87 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH--H-------HTT-----C-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEecchHHHHHHH--H-------hhc-----c-cccCccccccccceee
Confidence            59999999999999999999998 68999999999876542211  0       111     1 2345667765 79998


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      +-|.     +.+.|+++...+++- -+++..+-+++-+++ ..+.|+++.|
T Consensus        88 iPcA-----~~~~I~~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI  131 (201)
T d1c1da1          88 APCA-----MGGVITTEVARTLDC-SVVAGAANNVIADEA-ASDILHARGI  131 (201)
T ss_dssp             EECS-----CSCCBCHHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTC
T ss_pred             eccc-----ccccccHHHHhhhhh-heeeccCCCCcchhh-HHHHhcccce
Confidence            8664     367889999999974 477888888887764 3456666544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.19  E-value=2e-06  Score=71.65  Aligned_cols=100  Identities=18%  Similarity=0.225  Sum_probs=65.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|||||+|+||+++++.|.+.-+.+|++|||+.+.. +...+.       .+     .....+.++ +++||+|++|++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~-~~l~~~-------~~-----~~~~~~~~~-v~~~Div~lavk   66 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKR-ERLEKE-------LG-----VETSATLPE-LHSDDVLILAVK   66 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHH-HHHHHH-------TC-----CEEESSCCC-CCTTSEEEECSC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHH-HHhhhh-------cc-----ccccccccc-ccccceEEEecC
Confidence            4799999999999999977554348999999987543 221111       11     122344444 577999999997


Q ss_pred             CChhhhhcccHHHHhcCC-CCcEEEEcCCCcccCHHHHHHHHH
Q 016620          246 LDKTTYHLINKERLATMK-KEAILVNCSRGPVIDEVALVEHLK  287 (386)
Q Consensus       246 lt~~t~~li~~~~~~~mk-~gailIN~aRg~~vde~aL~~aL~  287 (386)
                        |+..    .+.++.++ .+.++|++.-|--  .+.|.+.+.
T Consensus        67 --P~~~----~~v~~~l~~~~~~viS~~ag~~--~~~l~~~l~  101 (152)
T d1yqga2          67 --PQDM----EAACKNIRTNGALVLSVAAGLS--VGTLSRYLG  101 (152)
T ss_dssp             --HHHH----HHHHTTCCCTTCEEEECCTTCC--HHHHHHHTT
T ss_pred             --HHHH----HHhHHHHhhcccEEeecccCCC--HHHHHHHhC
Confidence              3321    23344443 4689999877764  456666663

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.04  E-value=7e-06  Score=70.84  Aligned_cols=130  Identities=17%  Similarity=0.170  Sum_probs=82.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH--HHh-hhhhhhhhcCCCCc-------cccccCCHHHHhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQPV-------TWKRASSMDEVLR  235 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~~-------~~~~~~~l~ell~  235 (386)
                      ++|+|||.|.||+.+|..++ ..|++|+.||++.+.....  ... .+..........+.       ......+. +.+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~   82 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG   82 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccc-cccc
Confidence            47999999999999998874 6799999999987642111  111 11000010000000       00112233 3478


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      +||+|+-+.|-+-+.+.-+-.+.-+.++++++|...+.+-.  ...|.+.+.. .=...++-.|.
T Consensus        83 ~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~--i~~la~~~~~-p~r~~g~Hf~n  144 (186)
T d1wdka3          83 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTIS--ISLLAKALKR-PENFVGMHFFN  144 (186)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC--HHHHGGGCSC-GGGEEEEECCS
T ss_pred             ccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccccc--HHHHHHhccC-chheEeecccc
Confidence            99999999998888877677788888999999877666543  3556655543 33455555553

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.04  E-value=3.9e-06  Score=71.18  Aligned_cols=92  Identities=22%  Similarity=0.278  Sum_probs=68.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      -|++++|+|||||.-|.+=|..| +--|.+|++=-|......++        .+..|     + ...+++|+.++||+|.
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNL-rDSG~~V~VGLr~gs~s~~~--------A~~~G-----f-~v~~~~eA~~~aDiim   77 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAK--------AEAHG-----L-KVADVKTAVAAADVVM   77 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHH--------HHHTT-----C-EEECHHHHHHTCSEEE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhh-hhcCCCEEEEcCCCCccHHH--------Hhhhc-----c-ccccHHHHhhhcCeee
Confidence            47899999999999999999998 68899887765543321111        11122     2 2468999999999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEE
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILV  269 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailI  269 (386)
                      +.+|. .....+..++....||+|+.+.
T Consensus        78 ~L~PD-~~q~~vy~~~I~p~lk~g~~L~  104 (182)
T d1np3a2          78 ILTPD-EFQGRLYKEEIEPNLKKGATLA  104 (182)
T ss_dssp             ECSCH-HHHHHHHHHHTGGGCCTTCEEE
T ss_pred             eecch-HHHHHHHHHhhhhhcCCCcEEE
Confidence            99994 3345666778999999998775

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=6e-06  Score=62.99  Aligned_cols=73  Identities=23%  Similarity=0.186  Sum_probs=50.0

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      +++||+|.|+|+|..|+++|+.| ...|++|+++|.+........       +..    .........-++.+.+.|+|+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L-~~~g~~v~~~D~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~d~vi   69 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLDK-------LPE----AVERHTGSLNDEWLMAADLIV   69 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHH-HHTTCCCEEEESSSSCTTGGG-------SCT----TSCEEESBCCHHHHHHCSEEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHH-HHCCCEEEEeeCCcCchhHHH-------Hhh----ccceeecccchhhhccCCEEE
Confidence            57899999999999999999998 689999999998665422110       111    111111112256678999999


Q ss_pred             EccCC
Q 016620          242 LHPVL  246 (386)
Q Consensus       242 l~lPl  246 (386)
                      +..-.
T Consensus        70 ~SPGi   74 (93)
T d2jfga1          70 ASPGI   74 (93)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            87544

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.94  E-value=3e-05  Score=67.38  Aligned_cols=160  Identities=11%  Similarity=0.045  Sum_probs=91.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhh--------hhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      ++|+|+|+|.+|..+|..|+ ..|.+|++||.+.... +..-..        ..+.+... ..........++++.+..|
T Consensus         1 MkI~ViGlG~vGl~~a~~la-~~g~~V~g~D~n~~~i-~~ln~g~~p~~e~~~~~~l~~~-~~~~~~~~~~~~~~~i~~~   77 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTKI-DLINQGKSPIVEPGLEALLQQG-RQTGRLSGTTDFKKAVLDS   77 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHH-HHTTCEEEESCHHHHHHTC
T ss_pred             CEEEEECCCHhHHHHHHHHH-hCCCcEEEEeCCHHHH-HHhcccCCcccchhhhhhhhhh-hcccccccCCCHHHHHhhC
Confidence            57999999999999999985 6899999999875431 111000        00000000 0000122346888999999


Q ss_pred             CEEEEccCCChh------h---hhccc--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH-c--CCcceEEee-ccCCC
Q 016620          238 DVISLHPVLDKT------T---YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK-Q--NPMFRVGLD-VFEDE  302 (386)
Q Consensus       238 DiVvl~lPlt~~------t---~~li~--~~~~~~mk~gailIN~aRg~~vde~aL~~aL~-~--g~i~gaalD-V~~~E  302 (386)
                      |++++|+|....      .   ...++  ...+...+++.++|--|...+--.+.+...+- +  +...+--+. +|.+|
T Consensus        78 d~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE  157 (202)
T d1mv8a2          78 DVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPE  157 (202)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCC
T ss_pred             CEEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhh
Confidence            999999985211      0   11221  23455677899999988876655555444332 1  222222233 25566


Q ss_pred             CCCCC----CCCCCCCeEEcCCCCCCcHHHHHHH
Q 016620          303 PYMKP----GLSEMKNAIVVPHIASASKWTREGM  332 (386)
Q Consensus       303 P~~~~----~L~~~~nvilTPHia~~t~~~~~~~  332 (386)
                      -+...    .+...|.+++    |+.+.++.+.+
T Consensus       158 ~~~~G~a~~d~~~~~~iVi----G~~~~~~~~~~  187 (202)
T d1mv8a2         158 FLRESTAIKDYDFPPMTVI----GELDKQTGDLL  187 (202)
T ss_dssp             CCCTTSHHHHHHSCSCEEE----EESSHHHHHHH
T ss_pred             hhcccchhhhhcCCCeEEE----EeCCHHHHHHH
Confidence            55331    3556666655    45555554444

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.91  E-value=1.8e-05  Score=67.75  Aligned_cols=107  Identities=20%  Similarity=0.216  Sum_probs=65.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh-hhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-KANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.+|.++|..|+ .-|.+|..|.|......-+......... ..............+++++++.||+|++++
T Consensus         1 MkI~ViGaG~~GtalA~~la-~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            58999999999999999985 4578999998854432211111000000 000011111223468899999999999999


Q ss_pred             CCChhhhhcccHHHHhcCCCCcEEEEcCCCcc
Q 016620          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk~gailIN~aRg~~  276 (386)
                      |. ...+.++ ++....+++. .+|.++.|-.
T Consensus        80 ps-~~~~~~~-~~l~~~l~~~-~ii~~tkg~~  108 (180)
T d1txga2          80 ST-DGVLPVM-SRILPYLKDQ-YIVLISKGLI  108 (180)
T ss_dssp             CG-GGHHHHH-HHHTTTCCSC-EEEECCCSEE
T ss_pred             ch-hhhHHHH-Hhhccccccc-eecccccCcc
Confidence            94 3344443 4455556665 5555666654

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.88  E-value=7.6e-06  Score=70.85  Aligned_cols=108  Identities=14%  Similarity=0.151  Sum_probs=66.4

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhh--hhcCCCCccccccCCHHHHhhhCCEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL--KANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      +.-++|+|||.|..|.++|..|+ .-|.+|..|+|+.+... . ........  ...-..+.......++++++++||+|
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La-~~g~~V~l~~r~~~~~~-~-i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~i   81 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLS-KKCREVCVWHMNEEEVR-L-VNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEII   81 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHH-TTEEEEEEECSCHHHHH-H-HHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCE
T ss_pred             ceeceEEEECCCHHHHHHHHHHH-HcCCeEEEEEecHHHHH-H-HhhcccccccccccccccccccchhhhhccCCCCEE
Confidence            34457999999999999999985 56789999998764321 1 11000000  00011122233457899999999999


Q ss_pred             EEccCCChhhhhcccHH---H-HhcCCCCcEEEEcCCC
Q 016620          241 SLHPVLDKTTYHLINKE---R-LATMKKEAILVNCSRG  274 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~---~-~~~mk~gailIN~aRg  274 (386)
                      ++++|. ...+.++..-   . ....+++..+|+++-|
T Consensus        82 iiavPs-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          82 LFVIPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             EECSCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             EEcCcH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            999994 2333333221   0 1123567778888776

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3e-05  Score=65.42  Aligned_cols=79  Identities=15%  Similarity=0.127  Sum_probs=65.2

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .++.||+|.|||-+. +|+++|.+| ..-|++|+.++.+.                            .++.+.+++||+
T Consensus        33 i~l~GK~v~VIGrS~~VG~Pla~lL-~~~gatVt~~h~~t----------------------------~~l~~~~~~ADi   83 (166)
T d1b0aa1          33 IDTFGLNAVVIGASNIVGRPMSMEL-LLAGCTTTVTHRFT----------------------------KNLRHHVENADL   83 (166)
T ss_dssp             CCCTTCEEEEECCCTTTHHHHHHHH-HTTTCEEEEECSSC----------------------------SCHHHHHHHCSE
T ss_pred             cccccceEEEEeccccccHHHHHHH-HHhhcccccccccc----------------------------chhHHHHhhhhH
Confidence            579999999999987 899999998 57899999886532                            367788899999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |+.++..    .++|..+   ..|+|+++||++--.
T Consensus        84 vI~a~G~----p~~i~~~---~vk~g~vvIDvGi~~  112 (166)
T d1b0aa1          84 LIVAVGK----PGFIPGD---WIKEGAIVIDVGINR  112 (166)
T ss_dssp             EEECSCC----TTCBCTT---TSCTTCEEEECCCEE
T ss_pred             hhhhccC----ccccccc---ccCCCcEEEecCcee
Confidence            9999974    5677765   468999999997543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=6.6e-06  Score=68.60  Aligned_cols=97  Identities=9%  Similarity=0.089  Sum_probs=65.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|+|.|.||..+|..|+ ..|.+|..++|.......         ........  .......+..+.+..+|+|+++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~-~~G~~V~~~~r~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~   70 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALC-KQGHEVQGWLRVPQPYCS---------VNLVETDGSIFNESLTANDPDFLATSDLLLVT   70 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSCCSEEE---------EEEECTTSCEEEEEEEESCHHHHHTCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCceEEEEcCHHHhhh---------hccccCCccccccccccchhhhhcccceEEEe
Confidence            58999999999999999984 679999999987653211         00011111  1111123456777899999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      ++. .++...+ +.....+++++.++.+.-|
T Consensus        71 vka-~~~~~~~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          71 LKA-WQVSDAV-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             SCG-GGHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             ecc-cchHHHH-HhhccccCcccEEeeccCc
Confidence            995 4455443 4455667788888887665

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.79  E-value=3.4e-05  Score=67.53  Aligned_cols=95  Identities=21%  Similarity=0.169  Sum_probs=63.4

Q ss_pred             cCC-CeEEEEecChhHHHHHHHHHhc------CCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh
Q 016620          163 LKG-QTVGVIGAGRIGSAYARMMVEG------FKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (386)
Q Consensus       163 l~g-~~vgIvG~G~IG~~iA~~L~~~------fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell  234 (386)
                      +.| |+|+|||||.-|.+=|..| +-      .|.+|.+- .+.......         .+..+...... ...+.+|+.
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNL-rDSG~~~~sgv~V~VGLr~gs~S~~k---------A~~dGf~v~~~-~v~~v~EAv  109 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNL-KDSLTEAKSDVVVKIGLRKGSNSFAE---------ARAAGFSEENG-TLGDMWETI  109 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHH---------HHHTTCCGGGT-CEEEHHHHH
T ss_pred             hcCCCEEEEEEeccHHHHHHHhC-hhhcccccCCceEEEEeCCCChhHHH---------HHHcCCccCCC-cccCHHHHH
Confidence            578 8999999999999999998 55      55666544 322222111         11223221111 134788999


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEE
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN  270 (386)
                      ++||+|.+.+|...+ ..+. ++....||+|+.+.=
T Consensus       110 ~~ADiVmiLlPDe~Q-~~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         110 SGSDLVLLLISDSAQ-ADNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HTCSEEEECSCHHHH-HHHH-HHHHHHSCTTCEEEE
T ss_pred             hhCCEEEEecchHHH-HHHH-HHHHHhcCCCceeee
Confidence            999999999995333 4455 578899999987764

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=5.1e-05  Score=64.32  Aligned_cols=83  Identities=18%  Similarity=0.317  Sum_probs=65.8

Q ss_pred             ccccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      +.+++||+|.|||-+. +|+++|.+| ..-|++|..++.+.                            .++.+.+++||
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL-~~~gatVt~~~~~t----------------------------~~l~~~~~~aD   84 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKGD   84 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCS
T ss_pred             CcccccceEEEEecCCccchHHHHHH-HhccCceEEEeccc----------------------------ccHHHHHhhcc
Confidence            3579999999999976 899999998 57899999887532                            35677889999


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd  278 (386)
                      +|+.+.+.    .+++..+   ..|+|+++||++--.+.|
T Consensus        85 ivi~a~G~----~~~i~~~---~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          85 ILVVATGQ----PEMVKGE---WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             EEEECCCC----TTCBCGG---GSCTTCEEEECCCBC---
T ss_pred             chhhcccc----ccccccc---cccCCCeEeccCcccccc
Confidence            99999974    5667665   468999999998655433

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.70  E-value=0.0005  Score=58.80  Aligned_cols=143  Identities=13%  Similarity=0.190  Sum_probs=87.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHh--------hhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      ++|+|||+|.+|..+|..+  +.|.+|++||.+..... ..-.        ...+.++. ..  .......+..+...++
T Consensus         1 MkI~ViGlG~vGl~~a~~~--a~g~~V~g~Din~~~v~-~l~~g~~p~~e~~l~~~~~~-~~--~~~~~~~~~~~~~~~~   74 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL--SLQNEVTIVDILPSKVD-KINNGLSPIQDEYIEYYLKS-KQ--LSIKATLDSKAAYKEA   74 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH--TTTSEEEEECSCHHHHH-HHHTTCCSSCCHHHHHHHHH-SC--CCEEEESCHHHHHHHC
T ss_pred             CEEEEECCChhHHHHHHHH--HCCCcEEEEECCHHHHH-HHhhcccccchhhHHHHhhh-hh--hhhhccchhhhhhhcc
Confidence            5799999999999999876  46999999998865321 1000        00000111 11  1122234566667899


Q ss_pred             CEEEEccCCChhhhh-ccc-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCCCC--
Q 016620          238 DVISLHPVLDKTTYH-LIN-------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKP--  307 (386)
Q Consensus       238 DiVvl~lPlt~~t~~-li~-------~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~--  307 (386)
                      |++++++|...+... ..+       .+.+...+++.++|.-+.-.+-..+.+..-+.+.++      +|.+|-+...  
T Consensus        75 ~ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~------~~~PE~i~~G~a  148 (196)
T d1dlja2          75 ELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRI------IFSPEFLRESKA  148 (196)
T ss_dssp             SEEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCE------EECCCCCCTTST
T ss_pred             ccccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhh------ccchhhcchhhh
Confidence            999999997544221 111       122334567888888888777677777777665543      3667776432  


Q ss_pred             --CCCCCCCeEEcCC
Q 016620          308 --GLSEMKNAIVVPH  320 (386)
Q Consensus       308 --~L~~~~nvilTPH  320 (386)
                        .+...|++++--+
T Consensus       149 i~d~~~p~riv~G~~  163 (196)
T d1dlja2         149 LYDNLYPSRIIVSCE  163 (196)
T ss_dssp             THHHHSCSCEEEECC
T ss_pred             HhhccCCCEEEEeCC
Confidence              3556677766544

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.68  E-value=0.00023  Score=63.10  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=76.9

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCCE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDi  239 (386)
                      .+|.|+||.|-|+|++|+.+|+.| ...|++|++.|.+..... ...+.       .+.      ...+.+++ -..|||
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L-~~~Gakvv~~d~~~~~~~-~~~~~-------~g~------~~~~~~~~~~~~cDI   99 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAAVS-AAVAE-------EGA------DAVAPNAIYGVTCDI   99 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHH-HHHHH-------HCC------EECCGGGTTTCCCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEeecccHHHHH-HHHHh-------cCC------cccCCcccccccccE
Confidence            469999999999999999999998 689999999998765422 21111       111      12233443 357999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      ++-|.-     .+.|+++...+++- .+++-.+-..+.+.++-. .|.+..|
T Consensus       100 l~PcA~-----~~~I~~~~~~~l~a-k~Ive~ANn~~t~~ea~~-~L~~rGI  144 (230)
T d1leha1         100 FAPCAL-----GAVLNDFTIPQLKA-KVIAGSADNQLKDPRHGK-YLHELGI  144 (230)
T ss_dssp             EEECSC-----SCCBSTTHHHHCCC-SEECCSCSCCBSSHHHHH-HHHHHTC
T ss_pred             eccccc-----ccccChHHhhccCc-cEEEecccCCCCCchHHH-HHHhhCc
Confidence            988864     67788888888874 488888878888776644 4444433

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.61  E-value=9.9e-05  Score=62.56  Aligned_cols=103  Identities=16%  Similarity=0.120  Sum_probs=66.8

Q ss_pred             ccccccCCCeEEEEecChh-HHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc-----ccccCCHH
Q 016620          158 FVGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT-----WKRASSMD  231 (386)
Q Consensus       158 ~~g~~l~g~~vgIvG~G~I-G~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~  231 (386)
                      ..|.+++||++.|||-+.| |+++|.+| ..-|+.|..++.........        .........+     ......++
T Consensus        22 ~~g~~l~GK~vvVIGrS~iVG~Pla~lL-~~~gaTVt~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~lk   92 (171)
T d1edza1          22 PEGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTR--------GESLKLNKHHVEDLGEYSEDLLK   92 (171)
T ss_dssp             CTTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEES--------CCCSSCCCCEEEEEEECCHHHHH
T ss_pred             cccCCCCCCEEEEECCccccHHHHHHHH-HHCCCEEEEecccccccccc--------ccceeeeeeccccccccchhHHh
Confidence            3567899999999998875 99999998 57899999887653221000        0000000000     00112367


Q ss_pred             HHhhhCCEEEEccCCChhhhhc-ccHHHHhcCCCCcEEEEcCCCcc
Q 016620          232 EVLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSRGPV  276 (386)
Q Consensus       232 ell~~aDiVvl~lPlt~~t~~l-i~~~~~~~mk~gailIN~aRg~~  276 (386)
                      +...++|+|+.++|.    .++ +..+   ..|+|+++||+|-...
T Consensus        93 ~~~~~aDIvIsavG~----p~~~i~~d---~ik~GavvIDvGi~~~  131 (171)
T d1edza1          93 KCSLDSDVVITGVPS----ENYKFPTE---YIKEGAVCINFACTKN  131 (171)
T ss_dssp             HHHHHCSEEEECCCC----TTCCBCTT---TSCTTEEEEECSSSCC
T ss_pred             hccccCCEEEEccCC----CccccChh---hcccCceEeecccccc
Confidence            778899999999985    222 4443   3589999999986543

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.55  E-value=0.00013  Score=58.61  Aligned_cols=92  Identities=13%  Similarity=0.198  Sum_probs=57.6

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-c-ccccCCHHHH-hhhCCEEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-T-WKRASSMDEV-LREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~el-l~~aDiVvl  242 (386)
                      |++.|+|+|.+|+.+|+.| ...|.+|+++|.++....+         ++..+.... + ......|+++ +.+||.|++
T Consensus         1 k~~iIiG~G~~G~~la~~L-~~~g~~vvvid~d~~~~~~---------~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKVNA---------YASYATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHHHH---------TTTTCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCeEEEecCcHHHHHH---------HHHhCCcceeeecccchhhhccCCccccEEEE
Confidence            5789999999999999998 6889999999998754221         111121110 0 0112345555 789999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEE
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAIL  268 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gail  268 (386)
                      +++.+.++..+ .....+..+...++
T Consensus        71 ~~~~~~~~~~~-~~~~~~~~~~~~ii   95 (134)
T d2hmva1          71 AIGANIQASTL-TTLLLKELDIPNIW   95 (134)
T ss_dssp             CCCSCHHHHHH-HHHHHHHTTCSEEE
T ss_pred             EcCchHHhHHH-HHHHHHHcCCCcEE
Confidence            99976554333 23333334444333

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.54  E-value=0.00021  Score=60.14  Aligned_cols=102  Identities=15%  Similarity=0.093  Sum_probs=63.2

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH-hhhCCE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el-l~~aDi  239 (386)
                      ..+.|++|.|+|.|..+++++..| ...|++|+.++|+..... ...+.+    ....  ..   ...++++. ..++|+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al-~~~g~~i~I~nRt~~ka~-~l~~~~----~~~~--~~---~~~~~~~~~~~~~dl   82 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRAE-ELAKLF----AHTG--SI---QALSMDELEGHEFDL   82 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHHH-HHHHHT----GGGS--SE---EECCSGGGTTCCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHh-cccceEEEeccchHHHHH-HHHHHH----hhcc--cc---cccccccccccccce
Confidence            468999999999999999999987 468999999999876432 111111    1111  01   11222222 467999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      |+.|+|..-...  ....-++.++++++++|+--.+
T Consensus        83 iIN~Tp~G~~~~--~~~~~~~~~~~~~~v~D~vY~P  116 (170)
T d1nyta1          83 IINATSSGISGD--IPAIPSSLIHPGIYCYDMFYQK  116 (170)
T ss_dssp             EEECCSCGGGTC--CCCCCGGGCCTTCEEEESCCCS
T ss_pred             eecccccCcccC--CCCCcHHHhccCcEEEEeecCC
Confidence            999999753221  1111234466666666665443

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.41  E-value=0.00025  Score=66.49  Aligned_cols=98  Identities=20%  Similarity=0.283  Sum_probs=71.2

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      -++++|||.|..+..-++.+..-++. +|.+|+|++... +++.+.    ++  ...+..+..+.+++++++.||+|++|
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~-~~~~~~----l~--~~~g~~v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIAN----LK--EYSGLTIRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHH----HT--TCTTCEEEECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHH-HHHHHh----hh--hccCCCceecCCHHHHHhcCCceeec
Confidence            46899999999999988876556765 799999987653 223222    11  12234455678999999999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ++. +.+.-++..+   .+|+|+.+..+|.
T Consensus       201 Tas-~s~~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         201 TAD-KAYATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             CCC-SSEEEEECGG---GCCTTCEEEECSC
T ss_pred             ccc-CCCCcccchh---hcCCCCEEeeccc
Confidence            863 3455677764   4789999988865

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.40  E-value=0.00032  Score=57.76  Aligned_cols=106  Identities=13%  Similarity=0.215  Sum_probs=60.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ...++|+|||.|.+|..+|..|+. ++.-++..||+........-.+..+... .   .........+.++ +++||+|+
T Consensus         3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~-~---~~~~~~~~~d~~~-~~~adivv   77 (146)
T d1ez4a1           3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQA-F---TAPKKIYSGEYSD-CKDADLVV   77 (146)
T ss_dssp             TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGG-G---SCCCEEEECCGGG-GTTCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhcccc-c---cCCceEeeccHHH-hccccEEE
Confidence            356799999999999999987753 4556899999876532222122111111 1   1111122345554 68999999


Q ss_pred             EccCCCh---hhh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDK---TTY--------HLIN--KERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~---~t~--------~li~--~~~~~~mk~gailIN~aR  273 (386)
                      ++.....   .++        .++.  .+.+..-.+.+++++++-
T Consensus        78 itag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          78 ITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             ECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            9864321   111        1111  123444568889999874

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.38  E-value=0.00038  Score=57.32  Aligned_cols=107  Identities=18%  Similarity=0.247  Sum_probs=60.8

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      -.+++|+|||.|.+|..+|..|+. ++.-++..||...........+..    ...............-.+.+++||+|+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~----~~~~~~~~~~~~~~~d~~~l~daDvvv   79 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFN----HGKVFAPKPVDIWHGDYDDCRDADLVV   79 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHH----HHTTSSSSCCEEEECCGGGTTTCSEEE
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHh----hCccccCCCeEEEECCHHHhccceeEE
Confidence            467899999999999999987643 455589999987654222112211    011111111111123346688999999


Q ss_pred             EccCCChh---hh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKT---TY-HLI--NK-------ERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~---t~-~li--~~-------~~~~~mk~gailIN~aR  273 (386)
                      ++......   ++ .++  |.       +.+....|.+++++++-
T Consensus        80 itag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          80 ICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             ECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             EecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            97543221   11 111  11       23334457889999854

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.36  E-value=0.0014  Score=58.26  Aligned_cols=118  Identities=17%  Similarity=0.255  Sum_probs=73.9

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhhh----hhhhcCCCCcccccc
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQ----FLKANGEQPVTWKRA  227 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~----------~~~~~~~~~~~~----~~~~~~~~~~~~~~~  227 (386)
                      +|.|+||.|-|+|++|+.+|+.| ...|++|++++....          ..+.++.+....    .....  .  .....
T Consensus        28 ~l~g~~v~IqGfGnVG~~~a~~L-~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~--~--~~~~~  102 (242)
T d1v9la1          28 GIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTK--D--NAEFV  102 (242)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHT--S--CCCCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhc--c--CceEe
Confidence            69999999999999999999998 689999998764321          011100000000    00000  0  01111


Q ss_pred             CCHHHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          228 SSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       228 ~~l~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      .+.++++ ..||+++-|.-     .+.|+++...+++- .+++-.+-+++ ..++ .+.|.+..|.
T Consensus       103 ~~~~~i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         103 KNPDAIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             SSTTGGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             eCcchhccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            2233443 47999998874     56788888888864 48888899987 4455 3777766544

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.35  E-value=0.00044  Score=55.39  Aligned_cols=92  Identities=12%  Similarity=0.166  Sum_probs=57.7

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC---HHHH-hhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~el-l~~aDiVv  241 (386)
                      ++|.|+|+|.+|+.+|+.| ...|.+|++.|.++.... ...+       ..+. ........+   |+++ +.++|.++
T Consensus         1 M~IvI~G~G~~G~~la~~L-~~~g~~v~vid~d~~~~~-~~~~-------~~~~-~vi~Gd~~~~~~l~~~~i~~a~~vv   70 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDICK-KASA-------EIDA-LVINGDCTKIKTLEDAGIEDADMYI   70 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHH-HHHH-------HCSS-EEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCCcceecCChhhhh-hhhh-------hhhh-hhccCcccchhhhhhcChhhhhhhc
Confidence            5799999999999999998 688999999998875421 1111       1011 011111222   3333 68899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEE
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILV  269 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailI  269 (386)
                      .+++..+  .+++-....+.+.+..+++
T Consensus        71 ~~t~~d~--~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          71 AVTGKEE--VNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             ECCSCHH--HHHHHHHHHHHTTCCCEEE
T ss_pred             ccCCcHH--HHHHHHHHHHHcCCceEEE
Confidence            9888633  3444455556666665554

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.34  E-value=0.00045  Score=56.81  Aligned_cols=104  Identities=20%  Similarity=0.227  Sum_probs=59.3

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      |+|+|||.|.+|..+|-.|+ +++.-++..||.........-.+..+...  ........ ...+ .+.+++||+|+++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~--~~~~~~~~-~~~d-~~~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMA--NLEAHGNI-VIND-WAALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGG--GSSSCCEE-EESC-GGGGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhcccc--ccCCccce-eccC-HHHhccccEEEEec
Confidence            78999999999999998654 24555899999876542222222111100  01111111 2233 34579999999986


Q ss_pred             CCCh-------hhh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016620          245 VLDK-------TTY--------HLIN--KERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 Plt~-------~t~--------~li~--~~~~~~mk~gailIN~aR  273 (386)
                      ....       .++        .++.  .+.+....|.+++++++-
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  123 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISN  123 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecC
Confidence            5422       111        1111  123444578899999865

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=0.002  Score=56.98  Aligned_cols=118  Identities=18%  Similarity=0.211  Sum_probs=77.2

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      .++.|++|.|-|+|++|+.+|+.|.+..|++|++.+.+..          ..+..+.+...      ...........+.
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~------~~~~~~~~~~~~~  100 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHG------TVVTYPKGERITN  100 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSS------CSTTCSSCEEECH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhc------ceeccccceeecc
Confidence            4699999999999999999999875568999987753211          11112111110      0001111122355


Q ss_pred             HHHhh-hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          231 DEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       231 ~ell~-~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      ++++. .||+++-|.-     .+.|+++...+++-. +++-.+-+++-. ++ .+.|.+..|.
T Consensus       101 ~~~~~~~~DI~~PcA~-----~~~I~~~~a~~l~~~-~I~e~AN~p~t~-~a-~~~L~~rgI~  155 (234)
T d1b26a1         101 EELLELDVDILVPAAL-----EGAIHAGNAERIKAK-AVVEGANGPTTP-EA-DEILSRRGIL  155 (234)
T ss_dssp             HHHHTSCCSEEEECSC-----TTCBCHHHHTTCCCS-EEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccccccccceeecchh-----cccccHHHHHHhhhc-eEeecCCCCCCH-HH-HHHHHHCCeE
Confidence            67765 8999987753     678999999999854 788888888744 34 4667665443

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.31  E-value=0.00047  Score=58.92  Aligned_cols=83  Identities=14%  Similarity=0.166  Sum_probs=52.7

Q ss_pred             ccccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       160 g~~l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      |.+|+||++.|.| -|.||+.+|+.|+ ..|++|+..+|+..... +..+.+.+... ............++++++.+.|
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~la-~~G~~V~~~~r~~~~~~-~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALLA-GEGAEVVLCGRKLDKAQ-AAADSVNKRFK-VNVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHHH-HHHHHHHHHHT-CCCEEEECCSHHHHHHHTTTCS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHH-hhccchhhcccchHHHH-HHHHHHHhccc-hhhhhhhcccHHHHHHHhcCcC
Confidence            4689999999999 5999999999984 78999999999875422 11111111000 0000111112235566778888


Q ss_pred             EEEEccC
Q 016620          239 VISLHPV  245 (386)
Q Consensus       239 iVvl~lP  245 (386)
                      +|+.+.+
T Consensus        95 ilin~Ag  101 (191)
T d1luaa1          95 FVFTAGA  101 (191)
T ss_dssp             EEEECCC
T ss_pred             eeeecCc
Confidence            8887765

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.27  E-value=0.00013  Score=60.68  Aligned_cols=99  Identities=8%  Similarity=0.071  Sum_probs=59.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ++|+|.|||.|.||+.+|+.|+ .-|.+|+++||+..... ...+.+.    ..............+++.+...|+++.+
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~-~~g~~V~v~dr~~~~a~-~l~~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESAK-KLSAGVQ----HSTPISLDVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHH-TTTCEEEEEESCHHHHH-HHHTTCT----TEEEEECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCEEEEEECChHHHH-HHHhccc----ccccccccccchhhhHhhhhccceeEee
Confidence            4789999999999999999985 66899999999886532 2111110    0000000011113456778889999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|....  ..+   .....+.+..+++.+.
T Consensus        75 ~~~~~~--~~~---~~~~~~~~~~~~~~~~   99 (182)
T d1e5qa1          75 IPYTFH--ATV---IKSAIRQKKHVVTTSY   99 (182)
T ss_dssp             SCGGGH--HHH---HHHHHHHTCEEECSSC
T ss_pred             ccchhh--hHH---HHHHHhhccceeeccc
Confidence            885322  111   1222345666776653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=0.00035  Score=59.39  Aligned_cols=105  Identities=17%  Similarity=0.227  Sum_probs=61.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhH--HHHHHhhhhhhhhhcCCCCccccc---cCCHHHHh
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVL  234 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~ell  234 (386)
                      .+++|++|.|+|.|..|++++..|+ ..|+ +++.++|+....  .....+.+    ............   ..++.+.+
T Consensus        14 ~~l~~k~vlIlGaGGaarai~~al~-~~g~~~i~i~nR~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~   88 (182)
T d1vi2a1          14 FDIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRV----NENTDCVVTVTDLADQQAFAEAL   88 (182)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEECSSTTHHHHHHHHHHH----HHHSSCEEEEEETTCHHHHHHHH
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHh-hcCCceEeeeccchHHHHHHHHHHHHH----HhhcCcceEeeecccccchhhhh
Confidence            5789999999999999999998875 5676 788999876532  11111111    111001011111   12355668


Q ss_pred             hhCCEEEEccCCChhh---hhcccHHHHhcCCCCcEEEEcC
Q 016620          235 READVISLHPVLDKTT---YHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t---~~li~~~~~~~mk~gailIN~a  272 (386)
                      ..+|+|+.++|.....   ..++.  -+..++++.+++|+.
T Consensus        89 ~~~diiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~  127 (182)
T d1vi2a1          89 ASADILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECV  127 (182)
T ss_dssp             HTCSEEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECC
T ss_pred             cccceeccccCCccccccchhhhh--HHHhhhcchhhHHhh
Confidence            8999999999964321   11111  123456665555554

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.17  E-value=0.0016  Score=53.84  Aligned_cols=107  Identities=16%  Similarity=0.275  Sum_probs=61.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      +-++|+|||.|.+|+.+|..|+. ++ .++..+|.+.........+..+. ..... .........+.++.++.||+|++
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~-~el~L~D~~~~~~~g~a~Dl~~~-~~~~~-~~~~~~~~~~~~~~~~~adiVvi   82 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALREL-ADVVLYDVVKGMPEGKALDLSHV-TSVVD-TNVSVRAEYSYEAALTGADCVIV   82 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTC-CEEEEECSSSSHHHHHHHHHHHH-HHHTT-CCCCEEEECSHHHHHTTCSEEEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCC-ceEEEEEeccccchhHHHHHhhh-ccccC-CeeEEeccCchhhhhcCCCeEEE
Confidence            45789999999999999976642 33 38999997764322211221100 00011 11112223567788999999999


Q ss_pred             ccCCC--hh------hhh-cc--c----H---HHHhcCCCCcEEEEcCC
Q 016620          243 HPVLD--KT------TYH-LI--N----K---ERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt--~~------t~~-li--~----~---~~~~~mk~gailIN~aR  273 (386)
                      +....  +.      ++. ++  |    .   +.+....+.+++++++-
T Consensus        83 tag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsN  131 (154)
T d1pzga1          83 TAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTN  131 (154)
T ss_dssp             CCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             ecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            87431  11      221 11  1    1   22344568899999876

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.16  E-value=0.00067  Score=55.45  Aligned_cols=103  Identities=17%  Similarity=0.244  Sum_probs=55.5

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.+|..+|-.++ +++.-++..||.........-.+     +...............-.+.+++||+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D-----l~~~~~~~~~~~~~~~~~~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD-----INHGLPFMGQMSLYAGDYSDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH-----HTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee-----eccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence            47999999999999997654 35555899999776432111111     1111111111111222345678999999985


Q ss_pred             CCCh---hhh-hcc--c----H---HHHhcCCCCcEEEEcCC
Q 016620          245 VLDK---TTY-HLI--N----K---ERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 Plt~---~t~-~li--~----~---~~~~~mk~gailIN~aR  273 (386)
                      -...   +++ .++  |    +   +.+....|.+++++++.
T Consensus        77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  118 (142)
T d1y6ja1          77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  118 (142)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             ccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence            4322   111 111  1    1   22344567889999866

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.0011  Score=55.38  Aligned_cols=95  Identities=19%  Similarity=0.152  Sum_probs=62.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh--------
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--------  234 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell--------  234 (386)
                      .|.+|.|+|.|.||...+..+ +.+|+ +|++.|++..+...         .++.+..........+..+..        
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a-~~~G~~~Vi~~d~~~~rl~~---------a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRLSK---------AKEIGADLVLQISKESPQEIARKVEGQLG   95 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHHH---------HHHTTCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHHH-HHcCCceEEeccCCHHHHHH---------HHHhCCcccccccccccccccccccccCC
Confidence            567899999999999999986 78999 89999988765321         122232222222223444332        


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ...|+|+-|... +.+    -+..++.+++|..++.++-
T Consensus        96 ~g~Dvvid~~G~-~~~----~~~a~~~~~~gG~iv~~G~  129 (171)
T d1pl8a2          96 CKPEVTIECTGA-EAS----IQAGIYATRSGGTLVLVGL  129 (171)
T ss_dssp             SCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSC
T ss_pred             CCceEEEeccCC-chh----HHHHHHHhcCCCEEEEEec
Confidence            247999988874 222    2456777888888877754

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.14  E-value=0.00067  Score=55.27  Aligned_cols=103  Identities=17%  Similarity=0.281  Sum_probs=59.6

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.+|..+|-.++ +++.-++..+|...........+....    ............+ .+.+++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~----~~~~~~~~~~~~~-~~~~~~adivvita   75 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHG----TPFTRRANIYAGD-YADLKGSDVVIVAA   75 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHH----GGGSCCCEEEECC-GGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccccc----ccccccccccCCc-HHHhcCCCEEEEec
Confidence            47999999999999997654 366679999998765432222221111    0011111112233 45589999999985


Q ss_pred             CC--Ch-hhh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q 016620          245 VL--DK-TTY-HLI--N-------KERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 Pl--t~-~t~-~li--~-------~~~~~~mk~gailIN~aR  273 (386)
                      -.  .+ +++ .++  |       .+.+....|.+++++++-
T Consensus        76 g~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          76 GVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             ccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            32  22 111 111  1       123444568899999874

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00024  Score=59.48  Aligned_cols=97  Identities=16%  Similarity=0.140  Sum_probs=61.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc-ccCC-HHHHhhhCCEEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASS-MDEVLREADVIS  241 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~ell~~aDiVv  241 (386)
                      .|.+|.|+|.|.+|...++.+ +.+|++|++.|++..+...         .++.|....... ...+ .+......|+++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~a-k~~G~~vi~~~~~~~k~~~---------a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLIS-KAMGAETYVISRSSRKRED---------AMKMGADHYIATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCEEEEEESSSTTHHH---------HHHHTCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHHh-hhccccccccccchhHHHH---------hhccCCcEEeeccchHHHHHhhhcccceEE
Confidence            688999999999999999875 7899999999987654221         112232211111 1112 234455678888


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .+......   .--...++.++++..++.++-
T Consensus        97 ~~~~~~~~---~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          97 VCASSLTD---IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             ECCSCSTT---CCTTTGGGGEEEEEEEEECCC
T ss_pred             EEecCCcc---chHHHHHHHhhccceEEEecc
Confidence            87654221   111345677888888888753

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.09  E-value=0.00062  Score=57.10  Aligned_cols=65  Identities=15%  Similarity=0.280  Sum_probs=45.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .+|||+|+|.||+..++.+.+.-++++. ++|++...                 ..........+.++++.+.|+|++|+
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~D~Vvi~t   66 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL-----------------DTKTPVFDVADVDKHADDVDVLFLCM   66 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC-----------------SSSSCEEEGGGGGGTTTTCSEEEECS
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc-----------------ccccccccchhhhhhccccceEEEeC
Confidence            4699999999999999988433377766 45655432                 01112333457777888999999999


Q ss_pred             CCC
Q 016620          245 VLD  247 (386)
Q Consensus       245 Plt  247 (386)
                      |..
T Consensus        67 p~~   69 (170)
T d1f06a1          67 GSA   69 (170)
T ss_dssp             CTT
T ss_pred             CCc
Confidence            964

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.08  E-value=0.0013  Score=60.02  Aligned_cols=115  Identities=17%  Similarity=0.212  Sum_probs=72.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh----------hhHHHHHHhhhhhhhhhcCCCCccccccCCH
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ----------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (386)
                      .+|.|+||.|-|+|++|+.+|+.| ...|++|++++.+.          ...+..+.+...      ......... .+.
T Consensus        32 ~~L~gktvaIqGfGnVG~~~A~~L-~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~------~~~~~~~~~-~~~  103 (293)
T d1hwxa1          32 PGFGDKTFAVQGFGNVGLHSMRYL-HRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHG------TILGFPKAK-IYE  103 (293)
T ss_dssp             SSSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTS------SSTTCTTSC-BCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEccchhhccccccchHHHHHHHHHcC------Ceecccccc-cCC
Confidence            579999999999999999999998 58999998875321          122222222110      000000001 111


Q ss_pred             HHHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       231 ~ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      ++++ ..||+++-|.     +.+.|+.+...+++-. +++-.+-|++-. ++ .+.|.+..+
T Consensus       104 ~~~~~~~~DIliPaA-----~~~~I~~~~a~~l~ak-~I~EgAN~P~t~-eA-~~~L~~~gI  157 (293)
T d1hwxa1         104 GSILEVDCDILIPAA-----SEKQLTKSNAPRVKAK-IIAEGANGPTTP-QA-DKIFLERNI  157 (293)
T ss_dssp             SCGGGCCCSEEEECS-----SSSCBCTTTGGGCCCS-EEECCSSSCBCH-HH-HHHHHHTTC
T ss_pred             cccccCCccEEeecc-----ccccccHHHHHHHhhC-EEeccCCCCCCc-ch-HHHHHHCCC
Confidence            2333 4899998775     3677888888888644 888999999644 44 355665543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.06  E-value=0.0023  Score=53.82  Aligned_cols=123  Identities=17%  Similarity=0.146  Sum_probs=70.2

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEEc
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl~  243 (386)
                      ++||||+|.+|+..++.+...-+++|. ++|++.... ..+...       .+. +.....+.+++++++  +.|+|+++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~-~~~~~~-------~~~-~~~~~~~~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKA-KAFATA-------NNY-PESTKIHGSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHH-------TTC-CTTCEEESSHHHHHHCTTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCcccc-ccchhc-------ccc-ccceeecCcHHHhhhccccceeeec
Confidence            799999999999999887433377877 467766432 222111       111 111223578999984  57899999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCcceEEeeccCCCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMFRVGLDVFEDEP  303 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~ga-ilIN~-aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP  303 (386)
                      +|..  +..-+   ....++.|. +++.- .--.+-+.+.|.+..++..+....--.+...|
T Consensus        74 tp~~--~h~~~---~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~v~~~~r~~~  130 (184)
T d1ydwa1          74 LPTS--LHVEW---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHPQ  130 (184)
T ss_dssp             CCGG--GHHHH---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEECCCGGGCH
T ss_pred             ccch--hhcch---hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEEEEEEeeecCh
Confidence            9853  22212   223344443 44431 11233455677888887666544333333334

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=0.00074  Score=56.96  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=33.2

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      -.|.+|.|+|.|.||...++.+ +.+|+ +|++.|++...
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~a-k~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIA-RSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHH-HHTTBSEEEEEESCHHH
T ss_pred             CCCCEEEEECCCccchhheecc-ccccccccccccccccc
Confidence            3689999999999999999985 89998 89999987654

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.03  E-value=0.00089  Score=62.07  Aligned_cols=93  Identities=16%  Similarity=0.230  Sum_probs=67.1

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      -+++||+|.|..++.-++.++..+.. +|.+|+|+.+.. +.+.+.    .+..+     .....+.++.+..||+|+.|
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~-~~~~~~----~~~~~-----~~~~~~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAA-KKFVSY----CEDRG-----ISASVQPAEEASRCDVLVTT  194 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHH----HHHTT-----CCEEECCHHHHTSSSEEEEC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHH-HHHHHH----HHhcC-----CccccchhhhhccccEEEEe
Confidence            35799999999999999887656765 799999987543 333322    22221     11234667888999999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|   .+.-++..+   .+++|+.++.+|.
T Consensus       195 T~---s~~P~~~~~---~l~~G~hv~~iGs  218 (320)
T d1omoa_         195 TP---SRKPVVKAE---WVEEGTHINAIGA  218 (320)
T ss_dssp             CC---CSSCCBCGG---GCCTTCEEEECSC
T ss_pred             cc---Ccccccchh---hcCCCCeEeecCC
Confidence            87   456677664   4799999999875

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.03  E-value=0.0063  Score=53.79  Aligned_cols=117  Identities=24%  Similarity=0.351  Sum_probs=73.8

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh----------hHHHHHHhhhhhhhhhcCCCCccccccCCHH
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (386)
                      +|.|+||.|-|+|++|..+|+.|.+.+|++|++.+....          ..+.++...      .............+.+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~------~~~~~~~~~~~~~~~~  102 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNE------HGSVKDFPGATNITNE  102 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHH------HSSSTTCTTSEEECHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHh------ccccccCCCCeeeccc
Confidence            599999999999999999999875578999887643221          111111111      0011111001123445


Q ss_pred             HHh-hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcc
Q 016620          232 EVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       232 ell-~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~  292 (386)
                      +++ ..|||++-|.-     .+.|+++....++- .+++-.+-+++-. ++ .+.|.+..|.
T Consensus       103 ~i~~~~~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t~-ea-~~~L~~rgI~  156 (239)
T d1gtma1         103 ELLELEVDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVTP-EA-DEILFEKGIL  156 (239)
T ss_dssp             HHHHSCCSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE
T ss_pred             ccccccccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCCH-HH-HHHHHHCCCE
Confidence            554 68999988864     57788888888864 4888888888754 34 4566665443

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.01  E-value=0.0013  Score=58.39  Aligned_cols=100  Identities=16%  Similarity=0.141  Sum_probs=70.6

Q ss_pred             ccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccCCCCCC
Q 016620          226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEDEPYM  305 (386)
Q Consensus       226 ~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~~EP~~  305 (386)
                      ...+..|++++||+|++|+|..+.+..++ ++....+++|++++|+|.........+.+.+++..     +++....|..
T Consensus       131 v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kg-----i~vi~~hp~a  204 (242)
T d2b0ja2         131 VTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGRED-----LNITSYHPGC  204 (242)
T ss_dssp             EESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTT-----SEEEECBCSS
T ss_pred             EECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCC-----CEEECCCccC
Confidence            45789999999999999999776677777 67889999999999999998877788888887654     3333444432


Q ss_pred             CCCCCCCCCeEEcCCCCCCcHHHHHHHHHH
Q 016620          306 KPGLSEMKNAIVVPHIASASKWTREGMATL  335 (386)
Q Consensus       306 ~~~L~~~~nvilTPHia~~t~~~~~~~~~~  335 (386)
                      -+. ..-..+++.   ++.+.+..+...++
T Consensus       205 ~pe-~~g~~li~~---~~aseE~iekv~el  230 (242)
T d2b0ja2         205 VPE-MKGQVYIAE---GYASEEAVNKLYEI  230 (242)
T ss_dssp             CTT-TCCCEEEEE---SSSCHHHHHHHHHH
T ss_pred             cCc-cccceEEec---CCCCHHHHHHHHHH
Confidence            122 222334443   35677766665544

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.88  E-value=0.0018  Score=53.72  Aligned_cols=93  Identities=15%  Similarity=0.188  Sum_probs=55.6

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcC-CcEEEE-EcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-----hhC
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~f-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-----~~a  237 (386)
                      .++||||.|.||+. +.+.| +.+ ..++.+ .+++.......+.+.       .+. +  . ...++++++     .+.
T Consensus         5 irvaIIGaG~ig~~~~~~~l-~~~~~~el~avas~~~~~~~~~~a~~-------~~i-~--~-~~~~~d~l~~~~~~~~i   72 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQR-------MGV-T--T-TYAGVEGLIKLPEFADI   72 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHCSSEEEEEEECSCTTCHHHHHHHH-------TTC-C--E-ESSHHHHHHHSGGGGGE
T ss_pred             cEEEEEcCcHHHHHHHHHHH-hhCCcceEEEEEecchhccchhhhhh-------cCC-c--c-cccceeeeeeccccccc
Confidence            47999999999986 56776 444 445554 576654322222111       111 1  1 123345443     468


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+|++++|..   .|.=.+..+...+.|.++|+-+.
T Consensus        73 DiVf~ATpag---~h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          73 DFVFDATSAS---AHVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             EEEEECSCHH---HHHHHHHHHHHHCTTCEEEECST
T ss_pred             CEEEEcCCch---hHHHhHHHHHHHHcCCEEEEccc
Confidence            9999999942   33323445666799999999875

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=96.87  E-value=0.0015  Score=54.01  Aligned_cols=68  Identities=16%  Similarity=0.273  Sum_probs=46.1

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|||||+|.+|+. ....+.+.-++++. ++|++.... ..+.+.|       +     .....++++++.+.|+|+++
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~l~~~~D~V~I~   68 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW-------R-----IPYADSLSSLAASCDAVFVH   68 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH-------T-----CCBCSSHHHHHTTCSEEEEC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhh-hhhhhcc-------c-----ccccccchhhhhhccccccc
Confidence            37999999999986 45655333477765 678776542 2222221       1     12356889999999999999


Q ss_pred             cCC
Q 016620          244 PVL  246 (386)
Q Consensus       244 lPl  246 (386)
                      +|.
T Consensus        69 tp~   71 (164)
T d1tlta1          69 SST   71 (164)
T ss_dssp             SCT
T ss_pred             ccc
Confidence            995

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.85  E-value=0.002  Score=53.60  Aligned_cols=109  Identities=14%  Similarity=0.219  Sum_probs=63.0

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      ..+..++|+|||.|.+|..+|-.|+. ++--++..||.+.......-.+..+...  ..... ......+ .+-+++||+
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~--~~~~~-~~~~~~d-~~~~~~adi   91 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSL--FLQTP-KIVADKD-YSVTANSKI   91 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGG--GCCCS-EEEECSS-GGGGTTCSE
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcccc--ccCCC-eEEeccc-hhhcccccE
Confidence            34677899999999999999987642 4444899999876543222222211110  01111 1122234 355789999


Q ss_pred             EEEccCCC--h-hhhh-cc--cH-------HHHhcCCCCcEEEEcCC
Q 016620          240 ISLHPVLD--K-TTYH-LI--NK-------ERLATMKKEAILVNCSR  273 (386)
Q Consensus       240 Vvl~lPlt--~-~t~~-li--~~-------~~~~~mk~gailIN~aR  273 (386)
                      |+++.-..  + +++. ++  |.       ..+....+.+++++++.
T Consensus        92 VVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtN  138 (160)
T d1i0za1          92 VVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSN  138 (160)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            99975432  2 2221 11  11       12333467889999876

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.00026  Score=59.73  Aligned_cols=77  Identities=14%  Similarity=0.135  Sum_probs=49.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ..+.|++|.|+|.|..|++++..|. .-+.+|++++|+.+.. +...+.+    ....  .  .......+..+..+|+|
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~-~~~~~i~I~nR~~~~a-~~l~~~~----~~~~--~--~~~~~~~~~~~~~~dii   83 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLL-QAQQNIVLANRTFSKT-KELAERF----QPYG--N--IQAVSMDSIPLQTYDLV   83 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHH-HTTCEEEEEESSHHHH-HHHHHHH----GGGS--C--EEEEEGGGCCCSCCSEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHc-ccCceeeeccchHHHH-HHHHHHH----hhcc--c--cchhhhcccccccccee
Confidence            3689999999999999999998875 4567999999987542 2222211    1111  0  00111111225789999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      +.|+|..
T Consensus        84 IN~tp~g   90 (171)
T d1p77a1          84 INATSAG   90 (171)
T ss_dssp             EECCCC-
T ss_pred             eeccccc
Confidence            9999964

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.81  E-value=0.0047  Score=51.02  Aligned_cols=110  Identities=15%  Similarity=0.186  Sum_probs=63.8

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-hCCEEEEc
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-~aDiVvl~  243 (386)
                      .+|||||+|.+|+. ....+.+.-+.++.++|++.... ..+.+.|       +..    ..+.+.++++. +.|+|++|
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~-------~~~----~~~~~~~~ll~~~iD~V~I~   69 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVS----ATCTDYRDVLQYGVDAVMIH   69 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCC----CCCSSTTGGGGGCCSEEEEC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHhc-------ccc----cccccHHHhcccccceeccc
Confidence            47999999999987 55666334477888999876542 2222211       111    12456677765 56999999


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCCc
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~-aRg~~vde~aL~~aL~~g~i  291 (386)
                      +|.  .+..-+-...++. +. .+++.- ---.+-+...|.++.++.++
T Consensus        70 tp~--~~H~~~~~~al~~-gk-~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          70 AAT--DVHSTLAAFFLHL-GI-PTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             SCG--GGHHHHHHHHHHT-TC-CEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             ccc--ccccccccccccc-cc-ccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            995  3333233344432 22 255542 11233455777777776544

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.80  E-value=0.00076  Score=56.88  Aligned_cols=81  Identities=17%  Similarity=0.122  Sum_probs=52.7

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+++|++|.|+|.|..+++++..| ...| +|++++|+.+... +..+.+....   ...........+++..+..+|+|
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL-~~~~-~i~I~nR~~~ka~-~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~dli   87 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKAE-ALAKEIAEKL---NKKFGEEVKFSGLDVDLDGVDII   87 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHHH-HHHHHHHHHH---TCCHHHHEEEECTTCCCTTCCEE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-cccc-ceeeehhhhhHHH-HHHHHHHHhh---chhhhhhhhhhhhhhccchhhhh
Confidence            469999999999999999999887 5667 9999999876432 1111110000   00000011234555567889999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      +.|.|..
T Consensus        88 In~tp~g   94 (177)
T d1nvta1          88 INATPIG   94 (177)
T ss_dssp             EECSCTT
T ss_pred             ccCCccc
Confidence            9999964

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.79  E-value=0.0037  Score=50.75  Aligned_cols=105  Identities=19%  Similarity=0.290  Sum_probs=56.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      ++|+|||.|.+|.++|-.|+..--.++..+|...........+..+..... . .........+.++ +++||+|+++..
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~-~-~~~~i~~~~d~~~-~~~advvvitag   78 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIE-G-FDVRVTGTNNYAD-TANSDVIVVTSG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHH-T-CCCCEEEESCGGG-GTTCSEEEECCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhcccccc-C-CCCEEEecCcHHH-hcCCCEEEEeee
Confidence            589999999999999977653222489999987654322222211111100 1 1111222334444 689999999974


Q ss_pred             C--Ch-hhh-hcc--c----H---HHHhcCCCCcEEEEcCC
Q 016620          246 L--DK-TTY-HLI--N----K---ERLATMKKEAILVNCSR  273 (386)
Q Consensus       246 l--t~-~t~-~li--~----~---~~~~~mk~gailIN~aR  273 (386)
                      .  .+ .++ .++  |    +   +.+....|.++++.++.
T Consensus        79 ~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          79 APRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             ccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence            3  22 122 111  1    1   12334467888888765

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.00045  Score=56.69  Aligned_cols=45  Identities=16%  Similarity=0.149  Sum_probs=37.6

Q ss_pred             ccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHH
Q 016620          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (386)
Q Consensus       160 g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~  205 (386)
                      ...+.|++|.|||-|.+|..-|+.| ..+|++|+++++...+....
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~   52 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLHKSIIP   52 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEECTTHHH
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHH
Confidence            3569999999999999999999998 58899999998765544433

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.73  E-value=0.0042  Score=51.32  Aligned_cols=96  Identities=15%  Similarity=0.058  Sum_probs=58.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc--ccCCHHHH---h---
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEV---L---  234 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~el---l---  234 (386)
                      -.|.+|.|+|.|.||...++.+ +.+|++|+++|++..+...         .++.+.......  ...+..+.   +   
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~a-k~~Ga~vi~v~~~~~r~~~---------a~~~ga~~~~~~~~~~~~~~~~~~~~~~~   94 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRLEV---------AKNCGADVTLVVDPAKEEESSIIERIRSA   94 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHH---------HHHTTCSEEEECCTTTSCHHHHHHHHHHH
T ss_pred             CCCCEEEEEcccccchhhHhhH-hhhcccccccchHHHHHHH---------HHHcCCcEEEeccccccccchhhhhhhcc
Confidence            3577999999999999999985 7999999999998764311         111121111000  01122221   2   


Q ss_pred             --hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          235 --READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       235 --~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                        ...|+|+-|... +.+.    ...+..++++..++.++-
T Consensus        95 ~g~g~D~vid~~g~-~~~~----~~a~~~~~~~G~iv~~G~  130 (170)
T d1e3ja2          95 IGDLPNVTIDCSGN-EKCI----TIGINITRTGGTLMLVGM  130 (170)
T ss_dssp             SSSCCSEEEECSCC-HHHH----HHHHHHSCTTCEEEECSC
T ss_pred             cccCCceeeecCCC-hHHH----HHHHHHHhcCCceEEEec
Confidence              236888877753 2221    345667788888877754

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.70  E-value=0.0022  Score=51.55  Aligned_cols=95  Identities=19%  Similarity=0.177  Sum_probs=64.5

Q ss_pred             ccCCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHH-----HHHHhhhhhhhhhcCCCCccccc
Q 016620          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRL-----EKFVTAYGQFLKANGEQPVTWKR  226 (386)
Q Consensus       162 ~l~g~~vgIvG~----------G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  226 (386)
                      .+.+++|||+|+          ++-...+++.| ...|++|.+|||......     ..+..        ..........
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L-~~~g~~V~~~DP~v~~~~~~~~~~~~~~--------~~~~~~~~~~   80 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEYIE--------SKIPHVSSLL   80 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHHHH--------HTSHHHHTTB
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHH-hhhhccccccCCCCCHHHHhhhhhhhhh--------hcccccccee
Confidence            467899999998          46788899988 688999999998654310     00000        0000001223


Q ss_pred             cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEc
Q 016620          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       227 ~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~  271 (386)
                      ..+++++++.||+|+++++.. +-     .+....++++.+++|+
T Consensus        81 ~~~~~e~i~~~D~ivi~t~h~-~f-----~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          81 VSDLDEVVASSDVLVLGNGDE-LF-----VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             CSCHHHHHHHCSEEEECSCCG-GG-----HHHHHSCCTTCEEEES
T ss_pred             ehhhhhhhhhceEEEEEeCCH-HH-----HHHHHHhcCCCEEEEC
Confidence            578999999999999999852 22     2345567788899997

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.66  E-value=0.0049  Score=51.49  Aligned_cols=82  Identities=13%  Similarity=0.153  Sum_probs=48.2

Q ss_pred             CeEEEEecChhH--HHHHHHHHh--cCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          166 QTVGVIGAGRIG--SAYARMMVE--GFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG~G~IG--~~iA~~L~~--~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .+|.|||.|+.|  ..++..++.  .|. .++..+|........+..+...+........+.......+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            479999999887  445554422  233 489999987654222222221111111112223333457888999999999


Q ss_pred             EEccCCC
Q 016620          241 SLHPVLD  247 (386)
Q Consensus       241 vl~lPlt  247 (386)
                      +++....
T Consensus        82 v~ta~~~   88 (169)
T d1s6ya1          82 TTQFRVG   88 (169)
T ss_dssp             EECCCTT
T ss_pred             EEccccC
Confidence            9998643

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.63  E-value=0.0013  Score=55.71  Aligned_cols=78  Identities=18%  Similarity=0.182  Sum_probs=46.0

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEc-CChhhHHHHHHhhhhhhh-------hhcCCCCccccccCCHHHHhhhCC
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFL-------KANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d-~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      +|||.|||+||+.++|.+...=+++|.+.+ +.+...... ...+....       .......  .....+++++++++|
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--i~v~g~~~~~~~~vD   79 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFI-AHRRGIRIYVPQQSIKKFEESG--IPVAGTVEDLIKTSD   79 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHH-HHHTTCCEECCGGGHHHHHTTT--CCCCCCHHHHHHHCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHH-hcccCcceeccCccceeccccc--eecCCchhhhhhcCC
Confidence            699999999999999987544467887764 433322111 11110000       0000000  111246788889999


Q ss_pred             EEEEccCCC
Q 016620          239 VISLHPVLD  247 (386)
Q Consensus       239 iVvl~lPlt  247 (386)
                      +|+-|.|..
T Consensus        80 iViecTG~f   88 (178)
T d1b7go1          80 IVVDTTPNG   88 (178)
T ss_dssp             EEEECCSTT
T ss_pred             EEEECCCCc
Confidence            999999964

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.59  E-value=0.0017  Score=54.54  Aligned_cols=94  Identities=16%  Similarity=0.137  Sum_probs=58.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-h-----h
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-R-----E  236 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~-----~  236 (386)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|++..+...         .+..+..........++.+.+ +     .
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~a-k~~Ga~~Vi~~d~~~~r~~~---------a~~lGa~~~i~~~~~~~~~~v~~~t~g~G   96 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGA-KLRGAGRIIGVGSRPICVEA---------AKFYGATDILNYKNGHIEDQVMKLTNGKG   96 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HTTTCSCEEEECCCHHHHHH---------HHHHTCSEEECGGGSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEEcCCcchhhhhhhh-hcccccccccccchhhhHHH---------HHhhCccccccccchhHHHHHHHHhhccC
Confidence            578999999999999999985 79998 79999987654211         112222111111122333322 2     2


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      .|+|+-++... ++   + +..+..++++..++-++
T Consensus        97 ~D~vid~~g~~-~~---~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          97 VDRVIMAGGGS-ET---L-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             EEEEEECSSCT-TH---H-HHHHHHEEEEEEEEECC
T ss_pred             cceEEEccCCH-HH---H-HHHHHHHhcCCEEEEEe
Confidence            68888887642 11   1 44566677787777765

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.58  E-value=0.005  Score=50.49  Aligned_cols=105  Identities=17%  Similarity=0.272  Sum_probs=58.4

Q ss_pred             CCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      ..+|+|||.|.+|+.+|..|+. .+ .++..||.........-.+.-+.... ... ..... ..+..+.+++||+|+++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~Dl~~~~~~-~~~-~~~v~-~~~~~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALDTSHTNVM-AYS-NCKVS-GSNTYDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHHHHTHHHH-HTC-CCCEE-EECCGGGGTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecchhhhccc-cCC-CcEEE-ecccccccCCCcEEEEe
Confidence            3589999999999999987643 33 38999998664322211111100000 011 11111 12334567899999998


Q ss_pred             cCCChh---h-----h-hcc--cH----H---HHhcCCCCcEEEEcCC
Q 016620          244 PVLDKT---T-----Y-HLI--NK----E---RLATMKKEAILVNCSR  273 (386)
Q Consensus       244 lPlt~~---t-----~-~li--~~----~---~~~~mk~gailIN~aR  273 (386)
                      .-....   +     + .++  |.    +   .+....|++++++++.
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN  126 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN  126 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            653221   1     1 111  11    1   2334458899999876

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.55  E-value=0.011  Score=47.93  Aligned_cols=105  Identities=13%  Similarity=0.152  Sum_probs=59.3

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.+|.++|-.++. ++--++..+|...+.....-.+.-+. ...... ........+. |.+++||+|+++.
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~-~~~~~~-~~~i~~~~d~-~~~~~adiVvita   77 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHA-AAGIDK-YPKIVGGADY-SLLKGSEIIVVTA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH-HHTTTC-CCEEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhh-ccccCC-CCccccCCCH-HHhccccEEEEec
Confidence            589999999999999987642 44458999998765422211111000 000011 1112223344 5789999999886


Q ss_pred             C--CChh-h--------hhccc--HHHHhcCCCCcEEEEcCC
Q 016620          245 V--LDKT-T--------YHLIN--KERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 P--lt~~-t--------~~li~--~~~~~~mk~gailIN~aR  273 (386)
                      .  ..+. +        ..++.  .+.+....+.+++++++-
T Consensus        78 g~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          78 GLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             CCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             cccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            4  3221 1        11111  123444567889999877

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.52  E-value=0.0027  Score=51.48  Aligned_cols=105  Identities=17%  Similarity=0.211  Sum_probs=58.8

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      ++|+|||.|.+|..+|..|+. ++.-++..||...........+...... .... ...... .+..+.+++||+|+++.
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~-~~~~-~~~i~~-~~~~~~~~dadvvvita   77 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGP-VGLF-DTKVTG-SNDYADTANSDIVIITA   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHH-HHTC-CCEEEE-ESCGGGGTTCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccc-hhcc-cceEEe-cCCHHHhcCCeEEEEEE
Confidence            479999999999999987742 3335899999876532211112111100 0011 111222 23356689999999995


Q ss_pred             --CCChh-hhh--------ccc--HHHHhcCCCCcEEEEcCC
Q 016620          245 --VLDKT-TYH--------LIN--KERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 --Plt~~-t~~--------li~--~~~~~~mk~gailIN~aR  273 (386)
                        |..+. ++.        ++.  .+.+....|.+++++++-
T Consensus        78 g~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          78 GLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             ecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence              33332 111        110  122333458889999865

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.51  E-value=0.0028  Score=51.71  Aligned_cols=104  Identities=17%  Similarity=0.249  Sum_probs=58.7

Q ss_pred             CeEEEEecChhHHHHHHHHH-hcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~-~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      .+|+|||.|.+|..+|-.++ +++.-++..+|...........+.-+. ....+  ........+.+ .+++||+|+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a-~~~~~--~~~i~~~~~~~-~~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHG-SSFYP--TVSIDGSDDPE-ICRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHT-GGGST--TCEEEEESCGG-GGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhc-cccCC--CceeecCCCHH-HhhCCcEEEEec
Confidence            47999999999999997653 356568999998765432222221000 00001  11122234544 578999999985


Q ss_pred             CC--Ch-hhh-hcc--cH-------HHHhcCCCCcEEEEcCC
Q 016620          245 VL--DK-TTY-HLI--NK-------ERLATMKKEAILVNCSR  273 (386)
Q Consensus       245 Pl--t~-~t~-~li--~~-------~~~~~mk~gailIN~aR  273 (386)
                      -.  .+ +++ .++  |.       ..+....+.++++.++-
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  119 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN  119 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            43  22 121 111  11       23344567888888864

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0025  Score=49.72  Aligned_cols=38  Identities=21%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ..+.||||+|-|..|+.+|.. ++.+|.+++++|++...
T Consensus         9 ~~~~kigIlGgGQL~rMla~a-A~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIE-CQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHH-HHTTTCEEEEEESSTTC
T ss_pred             CCCCEEEEEeCCHHHHHHHHH-HHHCCCEEEEEcCCCCC
Confidence            466789999999999999998 48999999999998654

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.0032  Score=52.25  Aligned_cols=106  Identities=13%  Similarity=0.109  Sum_probs=60.7

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc-cccccCCHHHHhhhCCEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVI  240 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~ell~~aDiV  240 (386)
                      +...+|+|||.|.+|..+|..|+. ++.-++..+|.+.........+..+    .....+. ......+. +.+++||+|
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~----~~~~~~~~~~~~~~d~-~~~~~adiv   91 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQH----GSLFLSTPKIVFGKDY-NVSANSKLV   91 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHH----TTTTCSCCEEEEESSG-GGGTTEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhC----cchhcCCCeEEeccch-hhhccccEE
Confidence            555689999999999999987642 4444899999876543222222111    0111111 11223454 445899999


Q ss_pred             EEccCC--Ch-hhh-hcc--cH----HH---HhcCCCCcEEEEcCC
Q 016620          241 SLHPVL--DK-TTY-HLI--NK----ER---LATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPl--t~-~t~-~li--~~----~~---~~~mk~gailIN~aR  273 (386)
                      +++...  .+ +++ .++  |.    +.   +....+.+++++++.
T Consensus        92 vitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          92 IITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             EECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             EEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            988543  22 122 122  11    11   223468889999876

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.39  E-value=0.004  Score=51.30  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=32.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|.+|.|+|.|.||...++.+ +.+|++|++.|+++..
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~a-k~~G~~Vi~~~~~~~~   63 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYA-RAMGLHVAAIDIDDAK   63 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHH
T ss_pred             CCCEEEEeeccccHHHHHHHH-HHcCCccceecchhhH
Confidence            578999999999999999875 7899999999987654

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.35  E-value=0.0029  Score=55.20  Aligned_cols=73  Identities=10%  Similarity=0.071  Sum_probs=47.3

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEE
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVv  241 (386)
                      -+|||||+|.+|+. +...+...-+++|. ++|++.... +.+.+       ..+........+.+++|++.  +.|+|+
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a-~~~~~-------~~~i~~~~~~~~~d~~ell~~~~iD~V~  105 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKA-KIVAA-------EYGVDPRKIYDYSNFDKIAKDPKIDAVY  105 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHH-HHHHH-------HTTCCGGGEECSSSGGGGGGCTTCCEEE
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHH-HHHHH-------hhccccccccccCchhhhcccccceeee
Confidence            46999999999985 56665323377877 678876543 22222       22332223334578899885  578899


Q ss_pred             EccCC
Q 016620          242 LHPVL  246 (386)
Q Consensus       242 l~lPl  246 (386)
                      +++|.
T Consensus       106 I~tp~  110 (221)
T d1h6da1         106 IILPN  110 (221)
T ss_dssp             ECSCG
T ss_pred             eccch
Confidence            99994

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.31  E-value=0.0015  Score=54.05  Aligned_cols=35  Identities=14%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             CeEEEE-ecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          166 QTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       166 ~~vgIv-G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +||+|+ |.|.||+.+|++|+ ..|.+|.+++|++++
T Consensus         1 Mki~vigGaG~iG~alA~~la-~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLA-TLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999 89999999999985 789999999998754

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.29  E-value=0.019  Score=47.85  Aligned_cols=107  Identities=15%  Similarity=0.184  Sum_probs=60.4

Q ss_pred             CeEEEEecChhHHH-HHHHHHhcCC--cEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCE
Q 016620          166 QTVGVIGAGRIGSA-YARMMVEGFK--MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (386)
Q Consensus       166 ~~vgIvG~G~IG~~-iA~~L~~~fg--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (386)
                      .+|||||+|.+|+. .+..+ +.++  .++. ++|++.... ..+.+.|       +.    ...+.+++|+++  +.|+
T Consensus         4 irigiIG~G~~g~~~h~~~l-~~~~~~~~i~~v~d~~~~~~-~~~~~~~-------~~----~~~~~~~~ell~~~~id~   70 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSHA-EEFAKMV-------GN----PAVFDSYEELLESGLVDA   70 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHHH-HHHHHHH-------SS----CEEESCHHHHHHSSCCSE
T ss_pred             cEEEEEcCCHHHHHHHHHHH-HhCCCCeEEEEEEeccHhhh-hhhhccc-------cc----cceeeeeeccccccccce
Confidence            37999999999987 46666 4443  5666 578876442 2222222       11    113578999986  4788


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCC-cEEEEc-CCCcccCHHHHHHHHHcCC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKE-AILVNC-SRGPVIDEVALVEHLKQNP  290 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~g-ailIN~-aRg~~vde~aL~~aL~~g~  290 (386)
                      |++++|.  .+..-+-...++   .| .+++.- ---.+-+...|.+..++..
T Consensus        71 v~I~tp~--~~h~~~~~~al~---~gk~V~~EKPl~~~~~e~~~l~~~~~~~~  118 (181)
T d1zh8a1          71 VDLTLPV--ELNLPFIEKALR---KGVHVICEKPISTDVETGKKVVELSEKSE  118 (181)
T ss_dssp             EEECCCG--GGHHHHHHHHHH---TTCEEEEESSSSSSHHHHHHHHHHHHHCS
T ss_pred             eeccccc--cccccccccccc---cchhhhcCCCCcCCHHHHHHHHHHHHHhC
Confidence            9999984  333222233333   23 345442 1112344455666666543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.18  E-value=0.0023  Score=53.48  Aligned_cols=95  Identities=12%  Similarity=0.077  Sum_probs=57.4

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh-----
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----  236 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----  236 (386)
                      -.|.+|.|+|.|.||...++.+ +.+|++ |++.|++.....  +       .++.+..........++.+.+.+     
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~a-k~~g~~~v~~~~~~~~k~~--~-------a~~~Ga~~~i~~~~~~~~~~i~~~t~gg   96 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRLE--L-------AKQLGATHVINSKTQDPVAAIKEITDGG   96 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHHH--H-------HHHHTCSEEEETTTSCHHHHHHHHTTSC
T ss_pred             CCCCEEEEeCCCHHHhhhhhcc-cccccceeeeeccHHHHHH--H-------HHHcCCeEEEeCCCcCHHHHHHHHcCCC
Confidence            4688999999999999999985 788885 556676654321  1       11222221111122334433322     


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      .|+|+-|+.. +++.    +..++.++++..++.++
T Consensus        97 ~D~vid~~G~-~~~~----~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          97 VNFALESTGS-PEIL----KQGVDALGILGKIAVVG  127 (174)
T ss_dssp             EEEEEECSCC-HHHH----HHHHHTEEEEEEEEECC
T ss_pred             CcEEEEcCCc-HHHH----HHHHhcccCceEEEEEe
Confidence            6888888763 2221    45567778888887775

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.17  E-value=0.0053  Score=50.37  Aligned_cols=94  Identities=15%  Similarity=0.226  Sum_probs=59.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHH----HHhhhCCE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD----EVLREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----ell~~aDi  239 (386)
                      .|.+|.|.|.|.||...++.+ +.+|++|++.+++.....  +       .+..+..........++.    +.....|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a-~~~g~~v~~~~~~~~r~~--~-------~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKLE--L-------AKELGADLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHH--H-------HHHTTCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeecccchhhhhHHH-hcCCCeEeccCCCHHHhh--h-------hhhcCcceecccccchhhhhcccccCCCce
Confidence            578999999999999988875 789999999998765421  1       222232222111122333    23344566


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      ++.+... +++.    ...+..++++..++.++
T Consensus        97 ~v~~~~~-~~~~----~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          97 AVVTAVS-KPAF----QSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEESSCC-HHHH----HHHHHHEEEEEEEEECC
T ss_pred             EEeecCC-HHHH----HHHHHHhccCCceEecc
Confidence            6666542 3322    56677788888888875

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=96.11  E-value=0.018  Score=47.97  Aligned_cols=79  Identities=15%  Similarity=0.249  Sum_probs=47.7

Q ss_pred             CCeEEEEecChhHHHHHH--HHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          165 GQTVGVIGAGRIGSAYAR--MMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~--~L~~--~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      +.+|+|||.|++|...+-  .+++  .+ +-++..+|...+.......+.  .................+.+|.++.||+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~--~~~~~~~~~~~~i~~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIA--KKYVEEVGADLKFEKTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHH--HHHHHHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHH--HHHHHhcCCCeEEEEeCChhhcccCCCe
Confidence            468999999999976432  2222  33 359999999865422111110  0011111222334455789999999999


Q ss_pred             EEEccC
Q 016620          240 ISLHPV  245 (386)
Q Consensus       240 Vvl~lP  245 (386)
                      |+++.-
T Consensus        80 Vv~~~~   85 (171)
T d1obba1          80 VINTAM   85 (171)
T ss_dssp             EEECCC
T ss_pred             Eeeecc
Confidence            998854

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0025  Score=46.48  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=31.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      |||||+|-|-.|+-++.. ++.+|.+++++|+....
T Consensus         2 k~vgIlG~GQLgrMl~~A-a~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQA-GEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHH-HGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHH-HHHcCCEEEEEcCCCCC
Confidence            689999999999999998 48999999999987543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0072  Score=51.32  Aligned_cols=71  Identities=13%  Similarity=0.152  Sum_probs=48.9

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc-----cccCCHHHHhhhC
Q 016620          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-----KRASSMDEVLREA  237 (386)
Q Consensus       164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~ell~~a  237 (386)
                      ..|+|.|+| .|.||+++++.|. .-|.+|.+++|++.+...            ........     ....++.++++.+
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll-~~g~~V~~~~R~~~~~~~------------~~~~~~~~~~gD~~d~~~l~~al~~~   68 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAV-QAGYEVTVLVRDSSRLPS------------EGPRPAHVVVGDVLQAADVDKTVAGQ   68 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCGGGSCS------------SSCCCSEEEESCTTSHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCcCEEEEEEcChhhccc------------ccccccccccccccchhhHHHHhcCC
Confidence            467899999 5999999999874 678999999987654211            01111111     1124566789999


Q ss_pred             CEEEEccCCC
Q 016620          238 DVISLHPVLD  247 (386)
Q Consensus       238 DiVvl~lPlt  247 (386)
                      |+|+.++...
T Consensus        69 d~vi~~~g~~   78 (205)
T d1hdoa_          69 DAVIVLLGTR   78 (205)
T ss_dssp             SEEEECCCCT
T ss_pred             CEEEEEeccC
Confidence            9999888643

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.015  Score=48.03  Aligned_cols=94  Identities=16%  Similarity=0.238  Sum_probs=59.0

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hh
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (386)
                      .|.+|.|.|. |.+|....+.+ +.+|++|++.+++.+.. + +       .++.+..........++.+-+      ..
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a-~~~G~~vi~~~~~~~~~-~-~-------~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQ-K-I-------VLQNGAHEVFNHREVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHH-H-H-------HHHTTCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CCCEEEEEeccccccccccccc-cccCccccccccccccc-c-c-------ccccCcccccccccccHHHHhhhhhccCC
Confidence            6889999995 99999999974 89999999998765432 1 1       222333222212223443332      22


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+-+..  .++    -...++.++++..++.++.
T Consensus        98 ~d~v~d~~g--~~~----~~~~~~~l~~~G~iv~~G~  128 (174)
T d1yb5a2          98 IDIIIEMLA--NVN----LSKDLSLLSHGGRVIVVGS  128 (174)
T ss_dssp             EEEEEESCH--HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             ceEEeeccc--HHH----HHHHHhccCCCCEEEEEec
Confidence            577776654  111    2456777888888888753

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.02  E-value=0.0042  Score=51.39  Aligned_cols=93  Identities=18%  Similarity=0.287  Sum_probs=57.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH---HHHhhhCCEE
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEVLREADVI  240 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~ell~~aDiV  240 (386)
                      .|.+|.|+|.|.+|...++.+ +.+|+++++.+++.....  +       .++.+.....  ...+.   .......|++
T Consensus        30 ~G~~VlI~GaG~vG~~a~qla-k~~Ga~~i~~~~~~~~~~--~-------a~~lGad~~i--~~~~~~~~~~~~~~~D~v   97 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLA-HAMGAHVVAFTTSEAKRE--A-------AKALGADEVV--NSRNADEMAAHLKSFDFI   97 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSGGGHH--H-------HHHHTCSEEE--ETTCHHHHHTTTTCEEEE
T ss_pred             CCCEEEEeccchHHHHHHHHh-hcccccchhhccchhHHH--H-------HhccCCcEEE--ECchhhHHHHhcCCCcee
Confidence            688999999999999999985 899999999998765431  1       1122221111  11111   1223457888


Q ss_pred             EEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       241 vl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +-++.... +.    ...+..++++..++.++.
T Consensus        98 id~~g~~~-~~----~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2          98 LNTVAAPH-NL----DDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             EECCSSCC-CH----HHHHTTEEEEEEEEECCC
T ss_pred             eeeeecch-hH----HHHHHHHhcCCEEEEecc
Confidence            77776322 11    345666777777776653

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.93  E-value=0.016  Score=47.78  Aligned_cols=76  Identities=13%  Similarity=0.157  Sum_probs=46.2

Q ss_pred             CeEEEEecChhHHHHHH-HHHhc---C-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          166 QTVGVIGAGRIGSAYAR-MMVEG---F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~-~L~~~---f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      ++|.|||.|++|.+.+- .+++.   + .-++..+|...... ....+.    .+.............+.++.++.||+|
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~-~~~~d~----~~~~~~~~~~~~~t~~~~~~l~~aDvV   75 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQ-KIVVDF----VKRLVKDRFKVLISDTFEGAVVDAKYV   75 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHH-HHHHHH----HHHHHTTSSEEEECSSHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHH-HHHHHH----HHhhhccCceEEEecCcccccCCCCEE
Confidence            47999999999977763 22221   2 34899999876542 221111    111111122233346788999999999


Q ss_pred             EEccCC
Q 016620          241 SLHPVL  246 (386)
Q Consensus       241 vl~lPl  246 (386)
                      +++.-.
T Consensus        76 Vita~~   81 (162)
T d1up7a1          76 IFQFRP   81 (162)
T ss_dssp             EECCCT
T ss_pred             EEeccc
Confidence            998753

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.92  E-value=0.012  Score=52.38  Aligned_cols=119  Identities=14%  Similarity=0.147  Sum_probs=68.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcC--------Chh--hHHHHHHhhhhhh--------hhhcCCCCc
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--------YQA--TRLEKFVTAYGQF--------LKANGEQPV  222 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~--------~~~--~~~~~~~~~~~~~--------~~~~~~~~~  222 (386)
                      .+|.|+||.|-|+|++|+.+|+.| ...|++|++.+.        ..-  ..+.++.......        ....+.   
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L-~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~---  107 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKL-AELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGV---  107 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHH-HHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTC---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCc---
Confidence            469999999999999999999998 588999986532        111  1111111100000        000000   


Q ss_pred             cccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       223 ~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~-ga-ilIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      ......++  +-..||+++-|     .+.+.|+.+...+++. ++ +++-.+-+++-++. .-..|+++.|
T Consensus       108 ~~~~~~~~--~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~ea-~~~ll~~~gI  170 (255)
T d1bgva1         108 QFFPGEKP--WGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNEA-LRFLMQQPNM  170 (255)
T ss_dssp             EEEETCCG--GGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHH-HHHHHHCTTC
T ss_pred             eeechhhc--ccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchHH-HHHHHHhcCC
Confidence            00001111  22579998755     3577788887777753 34 88888888876654 3334554433

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.89  E-value=0.014  Score=47.21  Aligned_cols=103  Identities=16%  Similarity=0.218  Sum_probs=56.4

Q ss_pred             CeEEEEe-cChhHHHHHHHHHh-cCCcEEEEEcCChhh-HHH-HHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVE-GFKMNLIYYDLYQAT-RLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~-~fg~~V~~~d~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      .+|+|+| .|.+|+.+|-.++. ++.-++..+|..... ..+ ...+..+..  .. ...... ...+.+ .++.||+|+
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~--~~-~~~~~i-~~~~~~-~~~~aDiVv   75 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGI--AY-DSNTRV-RQGGYE-DTAGSDVVV   75 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHH--TT-TCCCEE-EECCGG-GGTTCSEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcc--cc-cCCceE-eeCCHH-HhhhcCEEE
Confidence            4799999 69999999987642 455589999964322 111 111211100  00 111111 223444 468999999


Q ss_pred             EccC--CChh-hh--------hccc--HHHHhcCCCCcEEEEcCC
Q 016620          242 LHPV--LDKT-TY--------HLIN--KERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lP--lt~~-t~--------~li~--~~~~~~mk~gailIN~aR  273 (386)
                      ++.-  ..+. ++        .++.  .+.+....+.++++.++.
T Consensus        76 itaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          76 ITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             EecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            8853  3221 21        1221  124455678889998865

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.71  E-value=0.015  Score=47.17  Aligned_cols=34  Identities=32%  Similarity=0.454  Sum_probs=27.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCC--cEEEEEcCChh
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQA  200 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg--~~V~~~d~~~~  200 (386)
                      ++|+|+|. |.+|+.+|..|+ ..+  -++..+|....
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~-~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLA-KEPFMKDLVLIGREHS   37 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-TCTTCCEEEEEECGGG
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCcccccccccchhh
Confidence            47999995 999999998874 444  48999998753

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.68  E-value=0.0058  Score=51.27  Aligned_cols=82  Identities=22%  Similarity=0.205  Sum_probs=45.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCC------CccccccCCHHHHhhhCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQ------PVTWKRASSMDEVLREAD  238 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~ell~~aD  238 (386)
                      .+|||.|||+||+.+++.+...-.+++... |+.+... ..+...++-........      ..+.....++.+++.++|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFE-AYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHH-HHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHH-HHHhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            479999999999999998744446776655 4433221 11111110000000000      000011236777788999


Q ss_pred             EEEEccCCCh
Q 016620          239 VISLHPVLDK  248 (386)
Q Consensus       239 iVvl~lPlt~  248 (386)
                      +|+=|.|.-.
T Consensus        82 vViEcTG~f~   91 (172)
T d2czca2          82 IIVDATPGGI   91 (172)
T ss_dssp             EEEECCSTTH
T ss_pred             EEEECCCCCC
Confidence            9999998543

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=95.67  E-value=0.0054  Score=51.44  Aligned_cols=81  Identities=19%  Similarity=0.174  Sum_probs=44.3

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEc-CChhhHHHHHHhhhhhhhhhcCCCC-------ccccccCCHHHHhhhC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQP-------VTWKRASSMDEVLREA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~ell~~a  237 (386)
                      ++|||-|||+||+.+.|.+...-..+|...+ +.+.... .+.-.|+.... .....       ......-+..++++++
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~-~~l~~~~~~~~-~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEA-RMALKKGYDLY-VAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHH-HHHHHTTCCEE-ESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHH-HHHHhcCCceE-ecccccceeecccCcccCCChhHhhcCC
Confidence            4799999999999999987433357777654 3332211 11111100000 00000       0000112566778899


Q ss_pred             CEEEEccCCCh
Q 016620          238 DVISLHPVLDK  248 (386)
Q Consensus       238 DiVvl~lPlt~  248 (386)
                      |+|+-|.|.-.
T Consensus        80 DvViEcTG~f~   90 (171)
T d1cf2o1          80 DIVIDCTPEGI   90 (171)
T ss_dssp             SEEEECCSTTH
T ss_pred             CEEEEccCCCC
Confidence            99999998643

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.66  E-value=0.034  Score=45.75  Aligned_cols=103  Identities=14%  Similarity=0.183  Sum_probs=64.7

Q ss_pred             ccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       162 ~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      +|.|++|++||=|+ +..+.+..+ ..||+++..+.|..-   .....+....   ...   .........++++.+..+
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~d~~ea~~~a   73 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQN---AAE---SGGSFELLHDPVKAVKDA   73 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHH---HHH---HTCEEEEESCHHHHTTTC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHH-HHcCCeEEEecccccCCChHHHHHHHHh---hhc---ccceEEEecCHHHHhhhc
Confidence            47899999999754 667778876 579999999987421   1111111100   000   011123457899999999


Q ss_pred             CEEEEccCCChh------------hhhcccHHHHhcCCCCcEEEEc
Q 016620          238 DVISLHPVLDKT------------TYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       238 DiVvl~lPlt~~------------t~~li~~~~~~~mk~gailIN~  271 (386)
                      |+|..-.-....            ....++.+.++.+|++++|.-.
T Consensus        74 dviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHp  119 (163)
T d1pvva2          74 DVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHC  119 (163)
T ss_dssp             SEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEEC
T ss_pred             cEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecC
Confidence            999875422211            1135678888888888888665

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.019  Score=46.57  Aligned_cols=102  Identities=23%  Similarity=0.214  Sum_probs=58.7

Q ss_pred             CeEEEEec-ChhHHHHHHHHH-h-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCC-CccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMV-E-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~-~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ++|+|+|. |.+|+.+|-.|+ + +++-++..+|..... .....+     +...... ........+..+.+++||+|+
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~-~g~a~D-----l~h~~~~~~~~~~~~~~~~~~~~~aDvvv   74 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVT-PGVAVD-----LSHIPTAVKIKGFSGEDATPALEGADVVL   74 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTH-HHHHHH-----HHTSCSSCEEEEECSSCCHHHHTTCSEEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccc-hhHHHH-----HHCCccccCCcEEEcCCCccccCCCCEEE
Confidence            48999995 999999998764 3 567799999975432 111122     1111111 111111233345688999999


Q ss_pred             EccC--CChh-hh-hcc--c-------HHHHhcCCCCcEEEEcCC
Q 016620          242 LHPV--LDKT-TY-HLI--N-------KERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lP--lt~~-t~-~li--~-------~~~~~~mk~gailIN~aR  273 (386)
                      ++.-  ..+. ++ .++  |       .+.+....|.+++|.++.
T Consensus        75 itaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN  119 (145)
T d2cmda1          75 ISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITN  119 (145)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             ECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence            9863  2332 11 122  1       123444567889999876

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.55  E-value=0.011  Score=48.00  Aligned_cols=105  Identities=19%  Similarity=0.273  Sum_probs=60.6

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCC--ccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~-~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~ell~~aDiVv  241 (386)
                      .+|+|+|. |.+|+.+|-.|+. ++--++..+|...... . -.+     +.......  .......+..|.++.||+|+
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~-~-a~D-----l~~~~~~~~~~~~~~~~~~~~~~~~aDivV   73 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPG-V-AAD-----LSHIETRATVKGYLGPEQLPDCLKGCDVVV   73 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHH-H-HHH-----HTTSSSSCEEEEEESGGGHHHHHTTCSEEE
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccch-h-hHH-----HhhhhhhcCCCeEEcCCChHHHhCCCCEEE
Confidence            47999995 9999999988742 3333789999765321 1 111     11111111  11223456778899999999


Q ss_pred             EccC--CCh-hhh-hcc--c----H---HHHhcCCCCcEEEEcCCCcccCH
Q 016620          242 LHPV--LDK-TTY-HLI--N----K---ERLATMKKEAILVNCSRGPVIDE  279 (386)
Q Consensus       242 l~lP--lt~-~t~-~li--~----~---~~~~~mk~gailIN~aRg~~vde  279 (386)
                      ++..  ..+ +++ .++  |    +   +.+....+.++++.++.  ++|.
T Consensus        74 itag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~  122 (144)
T d1mlda1          74 IPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNS  122 (144)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHH
T ss_pred             ECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhh
Confidence            8854  222 121 111  1    1   12333467889999865  4554

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.53  E-value=0.0067  Score=50.35  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=32.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      .+++|.|+|.|..|++++..| +..|+ +|.+++|+.+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL-~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCCEEEEecccHHH
Confidence            688999999999999999988 57887 79999998764

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.38  E-value=0.089  Score=45.51  Aligned_cols=180  Identities=13%  Similarity=0.116  Sum_probs=110.9

Q ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh-
Q 016620          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA-  200 (386)
Q Consensus       122 ~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~-  200 (386)
                      -+|=-+++-+|+..|-.                     |+.|+..+|.|+|.|.-|-.+|+.+....--+++.+|+..- 
T Consensus         4 GTaaV~LAgll~a~~~~---------------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi   62 (222)
T d1vl6a1           4 GTAVVVSAAFLNALKLT---------------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGIL   62 (222)
T ss_dssp             HHHHHHHHHHHHHHHHH---------------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEEC
T ss_pred             hHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEE
Confidence            35666778888877732                     35799999999999999999999885443347999997611 


Q ss_pred             ------hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          201 ------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       201 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                            ....++...+    .+... .  .....++.+++..+|++...-     +.+++.++.+..|.++.++.=.|..
T Consensus        63 ~~~r~~~~~~~~~~~~----~~~~~-~--~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNP  130 (222)
T d1vl6a1          63 NENDPETCLNEYHLEI----ARITN-P--ERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANP  130 (222)
T ss_dssp             CTTSGGGCSSHHHHHH----HHTSC-T--TCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSS
T ss_pred             EcCcccccccHHHHHH----Hhhhc-c--hhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCC
Confidence                  1111111111    11110 0  112357899999999876654     4778888999999999999999887


Q ss_pred             cccCHHHHHHHHHcCCcceEEeeccCCCCCCCCCCCCCCCeEEcCCCCCCcH----HHHHHHHHHHHHHHHHHH
Q 016620          275 PVIDEVALVEHLKQNPMFRVGLDVFEDEPYMKPGLSEMKNAIVVPHIASASK----WTREGMATLAALNVLGKI  344 (386)
Q Consensus       275 ~~vde~aL~~aL~~g~i~gaalDV~~~EP~~~~~L~~~~nvilTPHia~~t~----~~~~~~~~~~~~ni~~~~  344 (386)
                      .---|.+  .+-..|+..-|.     .-|.  +| -+..|+++-|=++-...    ...+.|...+++.|-.+.
T Consensus       131 t~~~e~~--~a~~~G~ai~At-----Gsp~--~p-~Q~NN~yiFPGiglGal~~~aritd~m~~aAA~alA~~~  194 (222)
T d1vl6a1         131 VPEIDPE--LAREAGAFIVAT-----GRSD--HP-NQVNNLLAFPGIMKGAVEKRSKITKNMLLSAVEAIARSC  194 (222)
T ss_dssp             SCSSCHH--HHHHTTCSEEEE-----SCTT--SS-SBCCGGGTHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTS
T ss_pred             ccchhhh--hheeccceEEec-----CCCC--CC-ccCcceeecchHHHHHHHhccccchHHHHHHHHHHHhcC
Confidence            6544443  344556533332     2232  11 35678888875532110    022455555566665554

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.27  E-value=0.025  Score=46.62  Aligned_cols=104  Identities=24%  Similarity=0.213  Sum_probs=57.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDi  239 (386)
                      .+|||||+|.+|+..++.+ +...    ..+...+.....                  .........+++|++.  +.|+
T Consensus         8 ~kv~iIG~G~~g~~h~~~l-~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~e~l~~~~iD~   68 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDL-KDPRSAAFLNLIGFVSRREL------------------GSLDEVRQISLEDALRSQEIDV   68 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TSHHHHTTEEEEEEECSSCC------------------CEETTEEBCCHHHHHHCSSEEE
T ss_pred             cEEEEEcCCHHHHHHHHHH-HhCCCCcEEEEEeccchHHH------------------HHhhccCcCCHHHHHhCCCcch
Confidence            3699999999999988876 3322    233332221110                  0011123458899986  4578


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHcCCcc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQNPMF  292 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~-aRg~~vde~aL~~aL~~g~i~  292 (386)
                      |++++|.  .+..-+....+..=+  .+++.= ---.+-+-+.|.++.++....
T Consensus        69 V~I~tp~--~~H~~~~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~  118 (172)
T d1lc0a1          69 AYICSES--SSHEDYIRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRV  118 (172)
T ss_dssp             EEECSCG--GGHHHHHHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred             hhhcccc--cccccccccccccch--hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence            9999995  433333344444322  366552 112455667777766655443

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.19  E-value=0.017  Score=46.72  Aligned_cols=95  Identities=7%  Similarity=0.005  Sum_probs=54.1

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH---HHH-hhhCCEEEE
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV-LREADVISL  242 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~el-l~~aDiVvl  242 (386)
                      ++-|+|+|.+|+.+++.| ...|.+|++.+..+.........     ....+. ........+.   +++ +.+||.|++
T Consensus         5 HiII~G~g~~g~~l~~~L-~~~~~~v~vId~d~~~~~~~~~~-----~~~~~~-~vi~Gd~~d~~~L~~a~i~~a~~vi~   77 (153)
T d1id1a_           5 HFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQ-----RLGDNA-DVIPGDSNDSSVLKKAGIDRCRAILA   77 (153)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHH-----HHCTTC-EEEESCTTSHHHHHHHTTTTCSEEEE
T ss_pred             EEEEECCCHHHHHHHHHH-HHcCCCEEEEeccchhHHHHHHH-----hhcCCc-EEEEccCcchHHHHHhccccCCEEEE
Confidence            589999999999999998 57899999998766432211111     111111 0001111222   222 578999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCc-EEEE
Q 016620          243 HPVLDKTTYHLINKERLATMKKEA-ILVN  270 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~ga-ilIN  270 (386)
                      +++.+..  .+.-....+.+.+.. +++-
T Consensus        78 ~~~~d~~--n~~~~~~~r~~~~~~~iia~  104 (153)
T d1id1a_          78 LSDNDAD--NAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             CSSCHHH--HHHHHHHHHHHTSSSCEEEE
T ss_pred             ccccHHH--HHHHHHHHHHhCCCCceEEE
Confidence            9986443  333334444554454 4433

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.18  E-value=0.021  Score=47.04  Aligned_cols=95  Identities=15%  Similarity=0.179  Sum_probs=58.1

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh-----hC
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~-----~a  237 (386)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++.....  +       .+..+..........+.++..+     ..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a-~~~g~~~vv~~~~~~~k~~--~-------~~~~ga~~~i~~~~~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLL-KVMTPATVIALDVKEEKLK--L-------AERLGADHVVDARRDPVKQVMELTRGRGV  101 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESSHHHHH--H-------HHHTTCSEEEETTSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEeCCChHHHHHHHHH-HhhcCcccccccchhHHHH--H-------HhhcccceeecCcccHHHHHHHhhCCCCc
Confidence            578999999999999999986 67775 7788888764321  1       1222222211111223344333     36


Q ss_pred             CEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       238 DiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      |+|+.+.... .+.    ...++.++++..++.++-
T Consensus       102 d~vid~~g~~-~~~----~~a~~~l~~~G~iv~~G~  132 (172)
T d1h2ba2         102 NVAMDFVGSQ-ATV----DYTPYLLGRMGRLIIVGY  132 (172)
T ss_dssp             EEEEESSCCH-HHH----HHGGGGEEEEEEEEECCC
T ss_pred             eEEEEecCcc-hHH----HHHHHHHhCCCEEEEEeC
Confidence            8888887642 221    445677888888888753

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.05  E-value=0.017  Score=45.43  Aligned_cols=91  Identities=11%  Similarity=0.153  Sum_probs=50.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH----hhhCCEEE
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el----l~~aDiVv  241 (386)
                      |++-|+|+|.+|+.+++.| ++.+.  .+.+.++.....         ....+.. .......+.+-+    +.+|+.++
T Consensus         1 kHivI~G~g~~g~~l~~~L-~~~~i--~vi~~d~~~~~~---------~~~~~~~-~i~Gd~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL-RGSEV--FVLAEDENVRKK---------VLRSGAN-FVHGDPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS-CGGGE--EEEESCTTHHHH---------HHHTTCE-EEESCTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-cCCCC--EEEEcchHHHHH---------HHhcCcc-ccccccCCHHHHHHhhhhcCcEEE
Confidence            5689999999999999997 66654  445554433211         1111111 111112233222    57899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCc-EEEEc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC  271 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~ga-ilIN~  271 (386)
                      ++.+.+.  .++.-....+.+.|.. +++-+
T Consensus        68 ~~~~~d~--~n~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          68 VNLESDS--ETIHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             ECCSSHH--HHHHHHHHHHHHCSSSCEEEEC
T ss_pred             Eeccchh--hhHHHHHHHHHHCCCceEEEEE
Confidence            9998643  3343344555565554 44443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.03  E-value=0.014  Score=48.36  Aligned_cols=94  Identities=15%  Similarity=0.144  Sum_probs=61.2

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh------hh
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell------~~  236 (386)
                      .|.+|.|.|. |.+|...++.+ +.+|++|++.+++.+..  ++       +++.+..........++.+-+      ..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla-~~~g~~vi~~~~~~~~~--~~-------l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKR--EM-------LSRLGVEYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH--HH-------HHTTCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCCcccccchhh-ccccccceeeecccccc--cc-------cccccccccccCCccCHHHHHHHHhCCCC
Confidence            5789999885 99999999985 89999999988765432  11       233333332222223443333      23


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .|+|+-++..  ++    -...++.++++..+|.++.
T Consensus        95 ~d~v~d~~g~--~~----~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_          95 VDVVLNSLAG--EA----IQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             EEEEEECCCT--HH----HHHHHHTEEEEEEEEECSC
T ss_pred             EEEEEecccc--hH----HHHHHHHhcCCCEEEEEcc
Confidence            6888877752  22    1456778888888888864

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.95  E-value=0.034  Score=43.19  Aligned_cols=99  Identities=12%  Similarity=0.149  Sum_probs=67.2

Q ss_pred             CeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~----G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      |+|.|||.    |..|..+.+.| +.+|.+|+.++|+...-                 .  +...+.+++++-..-|+++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L-~~~g~~V~pVnP~~~~i-----------------~--G~~~y~sl~~lp~~~D~vv   61 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-----------------E--GLKCYRSVRELPKDVDVIV   61 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-----------------T--TEECBSSGGGSCTTCCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHH-HHCCCEEEEEccccccc-----------------c--CccccccchhccccceEEE
Confidence            68999995    67899999998 68999999998865331                 1  1223578888888889999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      +++|. +.+..++. +..+ +...++++..+   .. .+++.+.+++..+
T Consensus        62 i~vp~-~~~~~~l~-~~~~-~g~k~v~~~~g---~~-~~~~~~~a~~~gi  104 (116)
T d1y81a1          62 FVVPP-KVGLQVAK-EAVE-AGFKKLWFQPG---AE-SEEIRRFLEKAGV  104 (116)
T ss_dssp             ECSCH-HHHHHHHH-HHHH-TTCCEEEECTT---SC-CHHHHHHHHHHTC
T ss_pred             EEeCH-HHHHHHHH-HHHh-cCCceEEeccc---hh-hHHHHHHHHHcCC
Confidence            99994 33444443 3433 44556777643   23 4456777766544

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.92  E-value=0.055  Score=45.40  Aligned_cols=107  Identities=14%  Similarity=0.188  Sum_probs=65.4

Q ss_pred             ccCCCeEEEEec--ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          162 LLKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       162 ~l~g~~vgIvG~--G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .|.|.+|++||=  .++..+++..+ ..||+++.+..|..-...+.+.+...+.....+   .......++++.++.+|+
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~-~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~eai~~aDv   77 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDF   77 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSE
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHH-HHcCCEEEEEccHHHHhhhHHHHHHHHHhhccC---CeEEEEeChhhccccccE
Confidence            588999999994  48999999987 579999999988532111111110000001111   223345789999999999


Q ss_pred             EEEccCCChh--h------------hhcccHHHHhcCCCCcEEEEcC
Q 016620          240 ISLHPVLDKT--T------------YHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       240 Vvl~lPlt~~--t------------~~li~~~~~~~mk~gailIN~a  272 (386)
                      |..-.-....  .            ..+.++.....+|+.++|.-+.
T Consensus        78 Vyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          78 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             EEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            9876542211  0            1222344555678888887664

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.85  E-value=0.059  Score=43.70  Aligned_cols=99  Identities=22%  Similarity=0.322  Sum_probs=60.0

Q ss_pred             cCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       163 l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      |.|.+|++||=   |++..+.+..+ ..||+++.++-+.........      ...   ..........++++.++++|+
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l-~~~g~~~~~~~p~~~~~~~~~------~~~---~~~~~~~~~~d~~eai~~aDv   70 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKE------ILD---ELNYPVKEVENPFEVINEVDV   70 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHH------HHT---TCCSCEEEESCGGGTGGGCSE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH-HHcCCeeEEEecccccccchh------hcc---cCCCeEEEEeCHHHHhhcCCe
Confidence            57999999997   45899999987 589998765544221111100      011   112234445789999999999


Q ss_pred             EEEccCCChh-----------hhhcccHHHHhcCCCCcEEEEc
Q 016620          240 ISLHPVLDKT-----------TYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       240 Vvl~lPlt~~-----------t~~li~~~~~~~mk~gailIN~  271 (386)
                      |...--....           ....++.+.++.++++++|.-+
T Consensus        71 vy~~~~q~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~  113 (153)
T d1pg5a2          71 LYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHP  113 (153)
T ss_dssp             EEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECC
T ss_pred             EEEeeeeehhccchhHHHHHHHhhhhhHHHHhccCCCeEEecC
Confidence            8754221110           1123566777777777766654

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.045  Score=45.11  Aligned_cols=106  Identities=17%  Similarity=0.133  Sum_probs=62.6

Q ss_pred             ccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       162 ~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      +|.|++|++||=|+ +-.+++..+ ..||+++.+..|..-.......+.........+   .......++++.+..+|+|
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~-~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~---~~i~~~~d~~~~~~~advi   76 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVL   76 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHH-HHcCCEEEEEeccccCCchHHHHHHHHHHhccC---CEEEEEcCHHHHHhhhhhe
Confidence            47899999999763 334455544 468999999887522111111110000011111   1233457899999999999


Q ss_pred             EEccCCChhh------------hhcccHHHHhcCCCCcEEEEc
Q 016620          241 SLHPVLDKTT------------YHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       241 vl~lPlt~~t------------~~li~~~~~~~mk~gailIN~  271 (386)
                      ..........            ...++.+.++.++++++|.-.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHp  119 (170)
T d1otha2          77 ITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHC  119 (170)
T ss_dssp             EECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEEC
T ss_pred             eeeceecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecC
Confidence            9877643321            123566777777777777665

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.69  E-value=0.1  Score=42.50  Aligned_cols=80  Identities=18%  Similarity=0.196  Sum_probs=50.3

Q ss_pred             cCCCeEEEEec--ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          163 LKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       163 l~g~~vgIvG~--G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      |.|++|++||=  .++-.+.+..+ ..||+++....|..-...+.......+.....+   .......++++.++.+|+|
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~-~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~---~~i~~~~d~~~ai~~aDvi   76 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADVV   76 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEecchhhhhhhhHHHHHHHHHhhcC---CceEEEecHHHhhhhhhhe
Confidence            67999999994  57999999986 579999999987532100000000000000111   1233457899999999999


Q ss_pred             EEccCC
Q 016620          241 SLHPVL  246 (386)
Q Consensus       241 vl~lPl  246 (386)
                      ..-.-.
T Consensus        77 yt~~~q   82 (161)
T d1vlva2          77 YTDVWA   82 (161)
T ss_dssp             EECCCC
T ss_pred             ecccee
Confidence            886643

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.69  E-value=0.064  Score=44.36  Aligned_cols=78  Identities=12%  Similarity=0.179  Sum_probs=46.8

Q ss_pred             CCeEEEEecChhHHHHH--HHHHh--cC-CcEEEEEcCChhhHH--HHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          165 GQTVGVIGAGRIGSAYA--RMMVE--GF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA--~~L~~--~f-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      ..+|.|||.|.+|...+  ..+++  .| +-++..+|...+...  ....+.+    ......+.......+.+|.++.|
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~----~~~~~~~~~~~~~~d~~eal~~A   78 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVF----IREKAPDIEFAATTDPEEAFTDV   78 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHH----HHHHCTTSEEEEESCHHHHHSSC
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHH----HHHhCCCcceEecCChhhccCCC
Confidence            34799999999986533  33321  22 247999998765421  1111111    11112233344457899999999


Q ss_pred             CEEEEccCC
Q 016620          238 DVISLHPVL  246 (386)
Q Consensus       238 DiVvl~lPl  246 (386)
                      |+|+++.-.
T Consensus        79 D~Vvitag~   87 (167)
T d1u8xx1          79 DFVMAHIRV   87 (167)
T ss_dssp             SEEEECCCT
T ss_pred             CEEEECCCc
Confidence            999999753

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.66  E-value=0.091  Score=43.42  Aligned_cols=95  Identities=16%  Similarity=0.045  Sum_probs=57.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccc-cccC-CHHHHh-----
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTW-KRAS-SMDEVL-----  234 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~l~ell-----  234 (386)
                      -.|.+|.|+|.|.||...+..+ +.+|+ +|++.|++..+..  .       .++.+...... .... ..+...     
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~a-k~~Ga~~Vi~~d~~~~r~~--~-------a~~~Ga~~~i~~~~~~~~~~~~~~~~~~   96 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKFP--K-------AKALGATDCLNPRELDKPVQDVITELTA   96 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHH--H-------HHHTTCSEEECGGGCSSCHHHHHHHHHT
T ss_pred             CCCCEEEEECCChHHHHHHHHH-HHhCCceeeeeccchHHHH--H-------HHHhCCCcccCCccchhhhhhhHhhhhc
Confidence            4678999999999999999985 79998 6888888765421  1       12223222111 1111 222222     


Q ss_pred             hhCCEEEEccCCChhhhhcccHHHHhcCCCC-cEEEEcC
Q 016620          235 READVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  272 (386)
Q Consensus       235 ~~aDiVvl~lPlt~~t~~li~~~~~~~mk~g-ailIN~a  272 (386)
                      ...|+++-|... +++    -...+..++++ ..++-++
T Consensus        97 ~G~d~vie~~G~-~~~----~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          97 GGVDYSLDCAGT-AQT----LKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             SCBSEEEESSCC-HHH----HHHHHHTBCTTTCEEEECC
T ss_pred             CCCcEEEEeccc-chH----HHHHHHHhhcCCeEEEecC
Confidence            346888888763 222    24556667774 4666654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.65  E-value=0.03  Score=42.06  Aligned_cols=73  Identities=18%  Similarity=0.262  Sum_probs=46.9

Q ss_pred             CCCeEEEEecChhH-HHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          164 KGQTVGVIGAGRIG-SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       164 ~g~~vgIvG~G~IG-~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ..+++=+||.|.+| .++|+.| +..|.+|.++|.......+.        +.+.+.   ......+ .+.+...|+|+.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L-~~~G~~VsGSD~~~~~~~~~--------L~~~Gi---~v~~g~~-~~~i~~~d~vV~   73 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEIL-LNEGYQISGSDIADGVVTQR--------LAQAGA---KIYIGHA-EEHIEGASVVVV   73 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHH-HHHTCEEEEEESCCSHHHHH--------HHHTTC---EEEESCC-GGGGTTCSEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHH-HhCCCEEEEEeCCCChhhhH--------HHHCCC---eEEECCc-cccCCCCCEEEE
Confidence            56789999999999 5579987 68999999999875543322        222232   1211122 334577888877


Q ss_pred             ccCCChh
Q 016620          243 HPVLDKT  249 (386)
Q Consensus       243 ~lPlt~~  249 (386)
                      .-...++
T Consensus        74 S~AI~~~   80 (96)
T d1p3da1          74 SSAIKDD   80 (96)
T ss_dssp             CTTSCTT
T ss_pred             CCCcCCC
Confidence            6544333

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.54  E-value=0.15  Score=42.43  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=61.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh--hhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .+|||+|. |-.|+.+.+.|++--..++.+...+.  ......   .++ .+.     ........+.+++.+++|+|++
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~---~~p-~~~-----~~~~~~~~~~~~~~~~~dvvf~   72 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEE---IFP-STL-----ENSILSEFDPEKVSKNCDVLFT   72 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHH---HCG-GGC-----CCCBCBCCCHHHHHHHCSEEEE
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccc---cCc-hhh-----ccccccccCHhHhccccceEEE
Confidence            37999998 99999999998542345666553222  111111   110 010     0111223577788889999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~  284 (386)
                      ++|.... ..+     .... .+..+||.|-.==.+....++
T Consensus        73 a~p~~~s-~~~-----~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          73 ALPAGAS-YDL-----VREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             CCSTTHH-HHH-----HTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             ccccHHH-HHH-----HHhh-ccceEEecCccccccchhhHH
Confidence            9997443 322     2333 578999998755555444444

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=94.51  E-value=0.075  Score=42.30  Aligned_cols=102  Identities=11%  Similarity=0.117  Sum_probs=68.2

Q ss_pred             CCCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~----G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .-++|+|||.    |..|..+.+.| +.+|.+++.+.++....                 .-.+...+.++.++-..-|+
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L-~~~g~~~~~v~~~~~~~-----------------~i~g~~~~~~l~~i~~~iD~   73 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE-----------------ELFGEEAVASLLDLKEPVDI   73 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS-----------------EETTEECBSSGGGCCSCCSE
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHH-hcCCCCceEEEeccccc-----------------eeeceecccchhhccCCCce
Confidence            4568999998    78999999998 68999999998754320                 00112345688888788899


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g  289 (386)
                      +++++|. +....++. +..+ +..+++++..+   ..++++...|.++|
T Consensus        74 v~v~~p~-~~v~~~v~-~~~~-~g~k~i~~q~G---~~~~e~~~~a~~~G  117 (136)
T d1iuka_          74 LDVFRPP-SALMDHLP-EVLA-LRPGLVWLQSG---IRHPEFEKALKEAG  117 (136)
T ss_dssp             EEECSCH-HHHTTTHH-HHHH-HCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred             EEEeccH-HHHHHHHH-HHHh-hCCCeEEEecC---ccCHHHHHHHHHcC
Confidence            9999993 33445543 3333 45667888654   34555544444444

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.45  E-value=0.03  Score=49.70  Aligned_cols=44  Identities=20%  Similarity=0.144  Sum_probs=36.3

Q ss_pred             ccccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhhHHH
Q 016620          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (386)
Q Consensus       160 g~~l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~  204 (386)
                      ..+|+||++.|.| -+.||+++|+.|+ .-|++|+..+++.....+
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~   57 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTESAE   57 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCchHHHH
Confidence            3569999999998 5899999999985 789999998877654433

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.43  E-value=0.067  Score=40.85  Aligned_cols=64  Identities=13%  Similarity=0.159  Sum_probs=46.1

Q ss_pred             CCCeEEEEec----------ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHH
Q 016620          164 KGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (386)
Q Consensus       164 ~g~~vgIvG~----------G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~el  233 (386)
                      ..++|||+|+          .+-.-.+.+.| +..|++|.+|||.....                ..........+++++
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L-~~~g~~v~iyDP~v~~~----------------~~~~~~~~~~~l~~~   76 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDIL-KSKDIKIIIYEPMLNKL----------------ESEDQSVLVNDLENF   76 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHH-HTSSCEEEEECTTCSCC----------------CTTCCSEECCCHHHH
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHH-hccccceeeecCCcChh----------------HhccCCEEEeCHHHH
Confidence            3468999998          45677889987 68899999999986531                001112234689999


Q ss_pred             hhhCCEEEEcc
Q 016620          234 LREADVISLHP  244 (386)
Q Consensus       234 l~~aDiVvl~l  244 (386)
                      +..||+|++..
T Consensus        77 ~~~sDiII~~~   87 (108)
T d1dlja3          77 KKQANIIVTNR   87 (108)
T ss_dssp             HHHCSEEECSS
T ss_pred             HhhCCEEEEcC
Confidence            99999876544

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=94.25  E-value=0.084  Score=46.99  Aligned_cols=40  Identities=10%  Similarity=0.213  Sum_probs=35.4

Q ss_pred             cccCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .+|+||++.|.| .|.||+++|+.|+ .-|++|+..+++...
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la-~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLS-SLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            579999999998 5899999999985 789999999998654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.069  Score=43.12  Aligned_cols=110  Identities=22%  Similarity=0.282  Sum_probs=58.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~--~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ++|||||. |.+|+.+.++|..  .| -.++..+..+......         ..... .........+ .+.++.+|+++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~---------~~~~~-~~~~~~~~~~-~~~~~~~DivF   70 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA---------PSFGG-TTGTLQDAFD-LEALKALDIIV   70 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBC---------CGGGT-CCCBCEETTC-HHHHHTCSEEE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccc---------ccccC-Cceeeecccc-hhhhhcCcEEE
Confidence            57999998 9999999976533  22 3356656543322000         00000 0011111122 24578999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc-----------ccCHHHHHHHHHcC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-----------VIDEVALVEHLKQN  289 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~-----------~vde~aL~~aL~~g  289 (386)
                      +|+|...  ..-+ ...+...+.+.++|+.|.--           =||.+.|..++++|
T Consensus        71 ~a~~~~~--s~~~-~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g  126 (146)
T d1t4ba1          71 TCQGGDY--TNEI-YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG  126 (146)
T ss_dssp             ECSCHHH--HHHH-HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred             EecCchH--HHHh-hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence            9999532  2212 22222233345677766522           24666777777764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.21  E-value=0.14  Score=42.20  Aligned_cols=38  Identities=18%  Similarity=0.172  Sum_probs=32.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      -.|.+|.|+|.|.+|...++.+ +..|+ +|++.|++..+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~a-k~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceeeccCChHHH
Confidence            4788999999999999999986 78886 79999987654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.14  E-value=0.071  Score=39.33  Aligned_cols=72  Identities=17%  Similarity=0.153  Sum_probs=46.4

Q ss_pred             CCeEEEEecChhHH-HHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       165 g~~vgIvG~G~IG~-~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      +++|=+||.|.+|- ++|+.| +..|++|.++|+...+..+.        ++..|..   .....+ .+.+..+|+|+..
T Consensus         1 ~~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~~--------L~~~Gi~---i~~gh~-~~~i~~~d~vV~S   67 (89)
T d1j6ua1           1 HMKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERTAY--------LRKLGIP---IFVPHS-ADNWYDPDLVIKT   67 (89)
T ss_dssp             CCEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH--------HHHTTCC---EESSCC-TTSCCCCSEEEEC
T ss_pred             CcEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhHHH--------HHHCCCe---EEeeec-ccccCCCCEEEEe
Confidence            36788999999998 588887 68999999999876544332        3333421   111111 2335678988777


Q ss_pred             cCCChh
Q 016620          244 PVLDKT  249 (386)
Q Consensus       244 lPlt~~  249 (386)
                      -...++
T Consensus        68 sAI~~~   73 (89)
T d1j6ua1          68 PAVRDD   73 (89)
T ss_dssp             TTCCTT
T ss_pred             cCcCCC
Confidence            544333

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.10  E-value=0.042  Score=43.49  Aligned_cols=108  Identities=17%  Similarity=0.147  Sum_probs=69.3

Q ss_pred             cCCCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          163 LKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       163 l~g~~vgIvG~----G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      +.-++|+|||.    |..|..+.+.|...+..+|+..+|....-                   .+...+.++.|+=..-|
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i-------------------~G~~~y~sl~dlp~~vD   66 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV-------------------QGVKAYKSVKDIPDEID   66 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE-------------------TTEECBSSTTSCSSCCS
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc-------------------CCeEeecchhhcCCCCc
Confidence            56689999997    89999999998433446999999865431                   11234578888888899


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcc-----cCHHHHHHHHHcCCc
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-----IDEVALVEHLKQNPM  291 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~-----vde~aL~~aL~~g~i  291 (386)
                      ++++++|. +.+..++ ++..+.=-++++++..+-++.     ..++.|.+..++..+
T Consensus        67 lvvi~vp~-~~~~~~~-~~~~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi  122 (129)
T d2csua1          67 LAIIVVPK-RFVKDTL-IQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM  122 (129)
T ss_dssp             EEEECSCH-HHHHHHH-HHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             eEEEecCh-HHhHHHH-HHHHHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence            99999994 3445554 344433334555555443332     234456666665433

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.09  E-value=0.035  Score=48.71  Aligned_cols=40  Identities=28%  Similarity=0.451  Sum_probs=35.0

Q ss_pred             cccCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ++|.||++.|.|.+. ||+++|+.|+ ..|++|+..|++.+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la-~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            469999999999865 9999999985 789999999997654

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.09  E-value=0.025  Score=46.32  Aligned_cols=94  Identities=18%  Similarity=0.169  Sum_probs=55.3

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HHHhh-----
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DEVLR-----  235 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ell~-----  235 (386)
                      .|.+|.|+|. |.+|...++.+ +..| .+|++.+++.....  +.       ++.+..........++ +++.+     
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~-~~~g~~~V~~~~~~~~~~~--~~-------~~~Ga~~~i~~~~~~~~~~~~~~~~~~   96 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAVE--AA-------KRAGADYVINASMQDPLAEIRRITESK   96 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHHH--HH-------HHHTCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEEeccccceeeeeecc-cccccccccccccchhhHH--HH-------HHcCCceeeccCCcCHHHHHHHHhhcc
Confidence            6789999995 99999999886 5677 58999998765421  11       1122211111111232 33322     


Q ss_pred             hCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       236 ~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      ..|+|+-|... +++.    +..+..++++..++.++
T Consensus        97 ~~d~vid~~g~-~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          97 GVDAVIDLNNS-EKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CEEEEEESCCC-HHHH----TTGGGGEEEEEEEEECC
T ss_pred             cchhhhccccc-chHH----HhhhhhcccCCEEEEec
Confidence            26777777653 2222    23456678887777764

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=94.01  E-value=0.1  Score=42.23  Aligned_cols=111  Identities=15%  Similarity=0.178  Sum_probs=57.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh--cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~--~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      ++|||||. |-.|+.+.++|..  .| ..++..+..+....  +       ... ............+ .+.++++|+|+
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g--k-------~~~-~~~~~~~~~~~~~-~~~~~~~DvvF   69 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV--P-------APN-FGKDAGMLHDAFD-IESLKQLDAVI   69 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS--B-------CCC-SSSCCCBCEETTC-HHHHTTCSEEE
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc--c-------ccc-cCCcceeeecccc-hhhhccccEEE
Confidence            47999987 9999999987632  22 24666554332110  0       000 0000001111122 35578999999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCc-----------ccCHHHHHHHHHcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-----------VIDEVALVEHLKQNP  290 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~-----------~vde~aL~~aL~~g~  290 (386)
                      +|+|.. .+..+ -.... .-..++++|+.|.-=           =+|.+.+.+++++|.
T Consensus        70 ~alp~~-~s~~~-~~~l~-~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          70 TCQGGS-YTEKV-YPALR-QAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             ECSCHH-HHHHH-HHHHH-HTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             EecCch-HHHHH-hHHHH-HcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence            999952 22222 12222 233345677765421           156666666776653

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.84  E-value=0.084  Score=46.46  Aligned_cols=39  Identities=26%  Similarity=0.287  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +|+||++.|.|. +.||+++|+.|+ .-|++|+..+++...
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la-~~G~~V~i~~r~~~~   42 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELA-GLGARVYTCSRNEKE   42 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999999985 779999999984 789999999998643

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.80  E-value=0.053  Score=45.80  Aligned_cols=37  Identities=38%  Similarity=0.334  Sum_probs=31.2

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      .|.+|.|+|.|.+|...+..+ +.+|+ +|++.|++..+
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~a-k~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASA-RLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHH-Hhhcccceeeecccchh
Confidence            688999999999998888875 67777 79999987654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.79  E-value=0.032  Score=49.14  Aligned_cols=41  Identities=24%  Similarity=0.347  Sum_probs=35.3

Q ss_pred             ccccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       160 g~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      |..|.||++.|.|. +.||+++|+.|+ .-|++|+..|++.+.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   42 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFV-NSGARVVICDKDESG   42 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            45699999999987 789999999985 789999999987643

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.76  E-value=0.18  Score=41.59  Aligned_cols=38  Identities=24%  Similarity=0.246  Sum_probs=33.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.|++.++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~a-k~~G~~~Vi~vd~~~~k   66 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGC-KSAGASRIIGIDLNKDK   66 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCchhHHHHHHH-HHcCCceEEEecCcHHH
Confidence            4688999999999999999986 78985 89999988765

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.62  E-value=0.07  Score=43.23  Aligned_cols=76  Identities=17%  Similarity=0.358  Sum_probs=52.3

Q ss_pred             cCCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       163 l~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      |.|.+|++||=   +++..+.+..+ ..||+++..+.|..-...+.....    ....+   .......++++.++.+|+
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~-~~~g~~~~~~~P~~~~~~~~~~~~----~~~~~---~~~~~~~d~~~av~~aDv   73 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVEE----LREKG---MKVVETTTLEDVIGKLDV   73 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHHH----HHHTT---CCEEEESCTHHHHTTCSE
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHH-HhcCCcEEEEccchhhcchHHHHH----HHhhc---ccceeecCHHHhhccCcE
Confidence            78999999998   68999999987 689999999987543211111110    11111   122345789999999999


Q ss_pred             EEEccCC
Q 016620          240 ISLHPVL  246 (386)
Q Consensus       240 Vvl~lPl  246 (386)
                      |....-.
T Consensus        74 vy~~~~~   80 (157)
T d1ml4a2          74 LYVTRIQ   80 (157)
T ss_dssp             EEECCCC
T ss_pred             EEeeccc
Confidence            8876653

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.48  E-value=0.05  Score=47.29  Aligned_cols=40  Identities=25%  Similarity=0.338  Sum_probs=34.2

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ++|+||++.|.|. +.||+++|+.|+ ..|++|+..+++...
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLV-GQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChHH
Confidence            4699999999988 559999999985 789999999987643

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.46  E-value=0.024  Score=50.37  Aligned_cols=41  Identities=17%  Similarity=0.200  Sum_probs=34.8

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~  202 (386)
                      ++|+||++.|.|. +.||+++|+.|+ .-|++|+..+++.+..
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la-~~G~~Vv~~~r~~~~~   44 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKEDE   44 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcHHH
Confidence            4699999999976 789999999985 7899999999876543

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=93.43  E-value=0.037  Score=45.63  Aligned_cols=90  Identities=16%  Similarity=0.181  Sum_probs=56.1

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCH-HH--HhhhCCE
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DE--VLREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~e--ll~~aDi  239 (386)
                      .|.+|.|.|. |.+|+...+.+ +.+|++|++.+++.....  +       .++.+.....  .+.+. ++  ....+|+
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqla-k~~G~~vi~~~~~~~~~~--~-------~~~lGa~~~i--~~~~~~~~~~~~~g~D~   94 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLA--L-------PLALGAEEAA--TYAEVPERAKAWGGLDL   94 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGSH--H-------HHHTTCSEEE--EGGGHHHHHHHTTSEEE
T ss_pred             CCCEEEEEeccccchhhhhhhh-cccccccccccccccccc--c-------ccccccceee--ehhhhhhhhhccccccc
Confidence            6889999995 99999999974 899999999987754321  1       1222322211  11121 11  1245788


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcC
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~a  272 (386)
                      |+-+..   ++   + .+.++.++++..++.++
T Consensus        95 v~d~~G---~~---~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          95 VLEVRG---KE---V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EEECSC---TT---H-HHHHTTEEEEEEEEEC-
T ss_pred             cccccc---hh---H-HHHHHHHhcCCcEEEEe
Confidence            777654   11   1 45677788888888775

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.33  E-value=0.18  Score=43.72  Aligned_cols=39  Identities=15%  Similarity=0.142  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +|.||++.|.|. +.||+++|+.|+ ..|++|+..+++.+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALH-ASGAKVVAVTRTNSD   41 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999987 569999999985 789999999987643

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=93.29  E-value=0.041  Score=42.60  Aligned_cols=34  Identities=12%  Similarity=0.385  Sum_probs=30.6

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      -++|.|||.|.||-++|..| ..+|.+|..+.+..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVI-KRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHH-Hhccccceeeehhc
Confidence            37899999999999999998 68999999998754

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=93.14  E-value=0.033  Score=45.39  Aligned_cols=92  Identities=18%  Similarity=0.271  Sum_probs=52.7

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHh-cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEE
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVE-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~-~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVv  241 (386)
                      |-+|||||. |-.|+++.+.|.+ .| -.++.++..+...-         .....   ...........++...++|+++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G---------~~~~~---~~~~~~~~~~~~~~~~~~d~~f   68 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAG---------KSLKF---KDQDITIEETTETAFEGVDIAL   68 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTT---------CEEEE---TTEEEEEEECCTTTTTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccc---------ccccc---cCCcccccccchhhhhhhhhhh
Confidence            458999999 9999999999853 22 34565554322210         00000   0000111223345678899999


Q ss_pred             EccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       242 l~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +++|.. .+..+    .....++|..+|+.|.
T Consensus        69 ~~~~~~-~s~~~----~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          69 FSAGSS-TSAKY----APYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ECSCHH-HHHHH----HHHHHHTTCEEEECSS
T ss_pred             hccCcc-chhhH----HhhhccccceehhcCh
Confidence            999842 22222    2233467999999865

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.14  E-value=0.14  Score=40.93  Aligned_cols=101  Identities=10%  Similarity=0.116  Sum_probs=67.1

Q ss_pred             CCCeEEEEec----ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       164 ~g~~vgIvG~----G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      .-++|+|||.    |..|..+++.| +.+|.+|+.++|....-                 .  +...+.+++++-..-|+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L-~~~g~~v~pVnP~~~~i-----------------~--G~~~~~sl~dlp~~iD~   77 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEEV-----------------L--GRKCYPSVLDIPDKIEV   77 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-----------------T--TEECBSSGGGCSSCCSE
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHH-HHCCCEEEEECCccccc-----------------C--CCcccccccccCccceE
Confidence            4578999996    57999999998 68999999999865321                 1  12235788888888999


Q ss_pred             EEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 016620          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (386)
Q Consensus       240 Vvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i  291 (386)
                      +++++|. ..+..++ ++..+ +...+++++.|   ..+++.. +.+++..+
T Consensus        78 v~i~vp~-~~~~~~~-~e~~~-~g~k~v~~~~G---~~~ee~~-~~a~~~gi  122 (139)
T d2d59a1          78 VDLFVKP-KLTMEYV-EQAIK-KGAKVVWFQYN---TYNREAS-KKADEAGL  122 (139)
T ss_dssp             EEECSCH-HHHHHHH-HHHHH-HTCSEEEECTT---CCCHHHH-HHHHHTTC
T ss_pred             EEEEeCH-HHHHHHH-HHHHH-hCCCEEEEecc---ccCHHHH-HHHHHCCC
Confidence            9999994 2233333 33333 45556777665   3455544 44444333

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.93  E-value=0.095  Score=45.66  Aligned_cols=39  Identities=26%  Similarity=0.282  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|++|+ ..|++|+..||+...
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   43 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALH-ATGARVVAVSRTQAD   43 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            589999999987 679999999985 789999999997654

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.92  E-value=0.083  Score=46.62  Aligned_cols=40  Identities=25%  Similarity=0.345  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ..|+||++.|.|.+ .||+++|+.|+ ..|++|+..+|+.+.
T Consensus        10 ~~L~GK~alITGassGIG~aiA~~la-~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_          10 EMLQGKKVIVTGASKGIGREMAYHLA-KMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            34999999999885 59999999985 689999999998654

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.83  E-value=0.049  Score=42.40  Aligned_cols=33  Identities=15%  Similarity=0.322  Sum_probs=29.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +++.|||.|.||-.+|..| ..+|++|..+.+..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l-~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVY-SRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHH-HhhCcceeEEEecc
Confidence            6899999999999999998 58999999998754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=92.77  E-value=0.2  Score=41.43  Aligned_cols=112  Identities=19%  Similarity=0.145  Sum_probs=65.4

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhc--CCc----EEEEEcCChhhH-HHHH-HhhhhhhhhhcC-CCCccccccCCHHHHh
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKF-VTAYGQFLKANG-EQPVTWKRASSMDEVL  234 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~~--fg~----~V~~~d~~~~~~-~~~~-~~~~~~~~~~~~-~~~~~~~~~~~l~ell  234 (386)
                      -.+|.|+|. |.||++++-+|+.+  ||.    .+..+|...... +... ++     +.... ..........+..+.+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~md-----l~d~a~~~~~~~~~~~~~~~~~   98 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAME-----LEDSLYPLLREVSIGIDPYEVF   98 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHH-----HHTTTCTTEEEEEEESCHHHHT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhh-----hcccccccccCccccccchhhc
Confidence            347999996 99999999887643  553    677778655332 1111 11     11111 1111233457889999


Q ss_pred             hhCCEEEEccCCC--h-hhh-hcc--c----H---HHHhc-CCCCcEEEEcCCCcccCHHHHH
Q 016620          235 READVISLHPVLD--K-TTY-HLI--N----K---ERLAT-MKKEAILVNCSRGPVIDEVALV  283 (386)
Q Consensus       235 ~~aDiVvl~lPlt--~-~t~-~li--~----~---~~~~~-mk~gailIN~aRg~~vde~aL~  283 (386)
                      +++|+|++..-..  + +|+ .++  |    +   +.+.. .+++++++=++.  .+|.-+++
T Consensus        99 ~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~i  159 (175)
T d7mdha1          99 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALI  159 (175)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHH
T ss_pred             cCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHH
Confidence            9999999886322  2 111 111  1    1   22333 466787777754  68887776

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.66  E-value=0.051  Score=41.70  Aligned_cols=33  Identities=21%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +++.|||.|.||-.+|..+ ..+|.+|..+.+..
T Consensus        23 ~~v~IiGgG~ig~E~A~~l-~~~G~~Vtlve~~~   55 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAY-ANFGTKVTILEGAG   55 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CeEEEECCCccceeeeeee-cccccEEEEEEecc
Confidence            7899999999999999998 58999999997654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.58  E-value=0.066  Score=47.04  Aligned_cols=36  Identities=22%  Similarity=0.273  Sum_probs=32.0

Q ss_pred             cCCCeEEEEec-C--hhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          163 LKGQTVGVIGA-G--RIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       163 l~g~~vgIvG~-G--~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      |+||++.|.|. |  .||.++|+.|+ .-|++|+..+++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la-~~Ga~V~i~~r~~   41 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCF-NQGATLAFTYLNE   41 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHH-TTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHH-HCCCEEEEEeCCH
Confidence            89999999997 4  49999999985 7899999999874

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=92.52  E-value=0.12  Score=42.56  Aligned_cols=95  Identities=19%  Similarity=0.139  Sum_probs=62.1

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCC-HHHHh-----hh
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVL-----RE  236 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ell-----~~  236 (386)
                      .|.+|.|.|. |.+|...++. ++..|++|++.+++.+..  ++       ++..+..........+ .+.++     ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiql-ak~~Ga~vi~~~~~~~~~--~~-------~~~~Ga~~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKI--AY-------LKQIGFDAAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEESSHHHH--HH-------HHHTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHH-HHccCCEEEEeCCCHHHH--HH-------HHhhhhhhhcccccccHHHHHHHHhhcCC
Confidence            6889999998 6688888887 589999999998876532  11       2233333221212222 33332     34


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg  274 (386)
                      .|+|+-++.  .++.    .+.++.++++..++.++..
T Consensus        99 vd~v~D~vG--~~~~----~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2          99 YDCYFDNVG--GEFL----NTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             EEEEEESSC--HHHH----HHHGGGEEEEEEEEECCCG
T ss_pred             CceeEEecC--chhh----hhhhhhccCCCeEEeecce
Confidence            888888885  2322    5678889999999998753

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.49  E-value=0.12  Score=45.31  Aligned_cols=39  Identities=26%  Similarity=0.318  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|.||++.|.|. +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLA-EEGTAIALLDMNREA   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999999988 559999999985 789999999987643

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.38  E-value=0.18  Score=43.71  Aligned_cols=39  Identities=26%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ ..|++|+..+++...
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~-~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFA-KEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            378999999987 569999999985 789999999987643

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.30  E-value=0.14  Score=44.17  Aligned_cols=38  Identities=18%  Similarity=0.177  Sum_probs=33.1

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      |+||++.|.|. +.||+++|+.|+ ..|++|+..+|+.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~-~~Ga~V~~~~r~~~~   40 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLS-QEGAEVTICARNEEL   40 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            78999999987 669999999985 789999999987643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=92.28  E-value=0.094  Score=46.09  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +|+||++.|.|.+ .||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAV-AAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            5899999999885 69999999985 689999999987654

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=92.20  E-value=0.16  Score=44.51  Aligned_cols=38  Identities=18%  Similarity=0.207  Sum_probs=33.1

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      |.||++.|.|. +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            78999999987 469999999985 789999999997654

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=92.20  E-value=0.11  Score=45.37  Aligned_cols=39  Identities=18%  Similarity=0.109  Sum_probs=33.1

Q ss_pred             cccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       161 ~~l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+|+||++.|.|.+   .||+++|++|+ .-|++|+..+++..
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la-~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCcHH
Confidence            46999999999985   49999999985 67999998887643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=92.18  E-value=0.068  Score=41.07  Aligned_cols=33  Identities=24%  Similarity=0.612  Sum_probs=30.0

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ++|.|||.|.+|-++|..| +.+|.+|..+++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l-~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVI-NGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHh-hccccEEEEEeecc
Confidence            6899999999999999998 68999999998765

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.15  E-value=0.17  Score=44.18  Aligned_cols=40  Identities=23%  Similarity=0.208  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .+++||++.|.|.+ .||+++|+.|+ ..|++|+..+++...
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            46899999999885 49999999985 789999999987654

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.026  Score=46.63  Aligned_cols=99  Identities=18%  Similarity=0.104  Sum_probs=54.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      .+|+|.|+ |+||+.+++.+.+.-++++. ++++........   -.   ..-.+..........++++++..+|+|+=.
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~---d~---~~~~~~~~~~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DA---GELAGAGKTGVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CT---TCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc---hh---hhhhccccCCceeeccHHHHhcccceEEEe
Confidence            46999996 99999999987555688865 445543221000   00   000011112222346778888999998766


Q ss_pred             cCCChhhhhcccHHHHhcCCCCcEEEEcCCCc
Q 016620          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (386)
Q Consensus       244 lPlt~~t~~li~~~~~~~mk~gailIN~aRg~  275 (386)
                      ..- +.+...+.  .  ..+.+.-+|-.++|=
T Consensus        79 s~p-~~~~~~~~--~--a~~~~~~~ViGTTG~  105 (162)
T d1diha1          79 TRP-EGTLNHLA--F--CRQHGKGMVIGTTGF  105 (162)
T ss_dssp             SCH-HHHHHHHH--H--HHHTTCEEEECCCCC
T ss_pred             ccH-HHHHHHHH--H--HHhccceeEEecCCC
Confidence            541 22233221  1  123455666666663

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.12  E-value=0.088  Score=40.34  Aligned_cols=36  Identities=17%  Similarity=0.223  Sum_probs=32.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ..+++|.|+|-|.||-.+|..| ..+|.+|..+.+..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l-~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFF-NATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhcchhheEeeccc
Confidence            4579999999999999999998 58999999998754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=92.12  E-value=0.1  Score=42.77  Aligned_cols=37  Identities=11%  Similarity=-0.014  Sum_probs=30.7

Q ss_pred             CCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|.+|.|.|.|. +|...++. ++.+|++|++.+++..+
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iql-ak~~Ga~Vi~~~~s~~k   65 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQW-AKALGAKLIGTVGTAQK   65 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHHTCEEEEEESSHHH
T ss_pred             CCCEEEEEccccccchHHHHH-HHHhCCeEeecccchHH
Confidence            588999996655 89888887 48999999999987754

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.02  E-value=0.24  Score=43.18  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +|+||++.|.|. +.||+++|+.|+ ..|++|+..+++.+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            589999999988 569999999985 789999999987654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.02  E-value=0.39  Score=38.93  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      =.|.+|.|+|.|.+|...+..+ +.+|+ +|++.|++..+
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~-~~~g~~~Vi~~~~~~~k   65 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEECCCCcHHHHHHHH-HHcCCceEEeecCcHHH
Confidence            4788999999999999999986 67775 89999987765

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=91.96  E-value=0.22  Score=42.97  Aligned_cols=71  Identities=13%  Similarity=0.169  Sum_probs=42.9

Q ss_pred             CeEEEEecChhHHHHHH----HHHh-cCCcEEE-EEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hC
Q 016620          166 QTVGVIGAGRIGSAYAR----MMVE-GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EA  237 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~----~L~~-~fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~a  237 (386)
                      .+|||||+|.+|..+++    .+.+ .-+.+++ ++|++.... +.+.+.|       +...  ...+.+++++++  +-
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~-~~~~~~~-------~~~~--~~~~~~~~~l~~~~~i   86 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSS-LQTIEQL-------QLKH--ATGFDSLESFAQYKDI   86 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHH-HHHHHHT-------TCTT--CEEESCHHHHHHCTTC
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHH-HHHHHhc-------cccc--ceeecchhhccccccc
Confidence            57999999986544443    3322 2367877 578876542 2222221       2211  223579999986  46


Q ss_pred             CEEEEccCC
Q 016620          238 DVISLHPVL  246 (386)
Q Consensus       238 DiVvl~lPl  246 (386)
                      |+|++|+|.
T Consensus        87 D~V~i~tp~   95 (237)
T d2nvwa1          87 DMIVVSVKV   95 (237)
T ss_dssp             SEEEECSCH
T ss_pred             ceeeccCCC
Confidence            789999984

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=91.90  E-value=0.35  Score=40.02  Aligned_cols=99  Identities=15%  Similarity=0.189  Sum_probs=53.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh--hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .+|||||. |-.|+++.++|..-=.+++.+...+..  .....   .++ ...   .... .......++.+..+|+|+.
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~---~~~-~~~---~~~~-~~~~~~~~~~~~~~Dvvf~   77 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGS---VFP-HLI---TQDL-PNLVAVKDADFSNVDAVFC   77 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHH---HCG-GGT---TSCC-CCCBCGGGCCGGGCSEEEE
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCcccc---ccc-ccc---cccc-ccchhhhhhhhcccceeee
Confidence            46999997 999999999985323456655532221  11111   110 010   0010 0111233455789999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vd  278 (386)
                      ++|....      .+....+.++...|+.+.+.-..
T Consensus        78 alp~~~s------~~~~~~l~~~~~~v~~~~~~~~~  107 (183)
T d2cvoa1          78 CLPHGTT------QEIIKGLPQELKIVDLSADFRLR  107 (183)
T ss_dssp             CCSSSHH------HHHHHTSCSSCEEEECSSTTTCS
T ss_pred             ccccchH------HHHHHHHHhcCcccccchhhhcc
Confidence            9996433      33334455555566655544433

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.85  E-value=0.076  Score=41.33  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=30.1

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +++.|||.|.||-.+|..| ..+|.+|..+.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l-~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGIL-SALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHH-hcCCcEEEEEeecc
Confidence            6899999999999999998 68999999998764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=91.84  E-value=0.072  Score=45.60  Aligned_cols=34  Identities=29%  Similarity=0.333  Sum_probs=30.4

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ||+|.|||.|.-|-..|..|+ ..|.+|.+++.+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La-~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLK-IHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHH-hCCCCEEEEeCCC
Confidence            689999999999999999984 6899999998653

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.72  E-value=0.11  Score=43.32  Aligned_cols=95  Identities=20%  Similarity=0.158  Sum_probs=62.0

Q ss_pred             CCCeEEEEe-cChhHHHHHHHHHhcCCcE-EEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh-----
Q 016620          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----  236 (386)
Q Consensus       164 ~g~~vgIvG-~G~IG~~iA~~L~~~fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~-----  236 (386)
                      .+.+|.|.| .|.+|...++. ++.+|++ |++.+.+.+.....        .+..+..........++.+.+++     
T Consensus        30 ~~etVLI~gaaGgVG~~aiQl-ak~~Ga~~vi~~~~~~e~~~~l--------~~~~gad~vi~~~~~~~~~~~~~~~~~G  100 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQI-GHLLGCSRVVGICGTQEKCLFL--------TSELGFDAAVNYKTGNVAEQLREACPGG  100 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHH-HHHTTCSEEEEEESSHHHHHHH--------HHHSCCSEEEETTSSCHHHHHHHHCTTC
T ss_pred             CCCEEEEECCCchhhHHHHHH-HHHcCCcceecccchHHHHhhh--------hhcccceEEeeccchhHHHHHHHHhccC
Confidence            457899999 59999999998 4899985 55556554432211        11233333333344567776666     


Q ss_pred             CCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       237 aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      +|+|+-++-.  ++    -...++.++++..++.++.
T Consensus       101 vDvv~D~vGg--~~----~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         101 VDVYFDNVGG--DI----SNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             EEEEEESSCH--HH----HHHHHTTEEEEEEEEEC--
T ss_pred             ceEEEecCCc--hh----HHHHhhhccccccEEEecc
Confidence            8999988852  21    2567888999999998864

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.68  E-value=0.062  Score=43.23  Aligned_cols=91  Identities=14%  Similarity=0.162  Sum_probs=49.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHh-cC-CcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVE-GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~-~f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      .+|||||. |-.|+.+.+.|.+ .+ ..++.....+...-         +.... ....  ......-.+.+.++|+++.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~G---------k~i~~-~~~~--~~~~~~~~~~~~~~d~vf~   70 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAG---------QRMGF-AESS--LRVGDVDSFDFSSVGLAFF   70 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTT---------CEEEE-TTEE--EECEEGGGCCGGGCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCC---------cceee-cccc--chhccchhhhhccceEEEe
Confidence            57999998 9999999998842 33 34555543322110         00000 0000  0001112244688999999


Q ss_pred             ccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       243 ~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      ++|.. .+..+ -...   .+.|.++||.|.
T Consensus        71 a~p~~-~s~~~-~~~~---~~~g~~VID~Ss   96 (144)
T d2hjsa1          71 AAAAE-VSRAH-AERA---RAAGCSVIDLSG   96 (144)
T ss_dssp             CSCHH-HHHHH-HHHH---HHTTCEEEETTC
T ss_pred             cCCcc-hhhhh-cccc---ccCCceEEeech
Confidence            99842 22222 1222   357889998765

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.64  E-value=0.26  Score=40.61  Aligned_cols=106  Identities=14%  Similarity=0.202  Sum_probs=57.8

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcC-CcEEEEEcCC-----hhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIYYDLY-----QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~f-g~~V~~~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      .+|+|+|. |-.|+.+.+.|. .. ..++.....+     .........    ..+.  +..........+.+.....+|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~-~HP~~ei~~l~~~s~~~~aGk~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~d   74 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVN-RHPHMTITALTVSAQSNDAGKLISDLH----PQLK--GIVDLPLQPMSDVRDFSADVD   74 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHH-HCTTEEEEEEEEETTCTTTTCBHHHHC----GGGT--TTCCCBEEEESCGGGTCTTCC
T ss_pred             cEEEEECcccHHHHHHHHHHH-hCCCCceEeeEeecccccccccccccc----cccc--cccccccccchhhhhhhcccc
Confidence            47999995 999999999984 54 5666544221     111111100    0011  111111222234455568899


Q ss_pred             EEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 016620          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV  283 (386)
Q Consensus       239 iVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~  283 (386)
                      ++++|+|...  ..-+   .-...+.|..+||.|.---.+....+
T Consensus        75 vvf~alp~~~--s~~~---~~~~~~~~~~vIDlSadfRl~~~~~~  114 (179)
T d2g17a1          75 VVFLATAHEV--SHDL---APQFLQAGCVVFDLSGAFRVNDRAFY  114 (179)
T ss_dssp             EEEECSCHHH--HHHH---HHHHHHTTCEEEECSSTTSSSCHHHH
T ss_pred             eeeccccchh--HHHH---hhhhhhcCceeecccccccccccccc
Confidence            9999999422  1111   11224578999998875554444433

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.58  E-value=0.19  Score=40.58  Aligned_cols=76  Identities=18%  Similarity=0.113  Sum_probs=45.6

Q ss_pred             eEEEEec-ChhHHHHHHHHHh--cCC----cEEEEEcCChhhHHHHHHhhhhhhhhhcC-CCCccccccCCHHHHhhhCC
Q 016620          167 TVGVIGA-GRIGSAYARMMVE--GFK----MNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       167 ~vgIvG~-G~IG~~iA~~L~~--~fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ell~~aD  238 (386)
                      +|.|+|. |.+|+.+|-.|+.  -|+    ..+..+|........+-.+.   ...... ..........+.++.+++||
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~d   81 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLM---ELQDCALPLLKDVIATDKEEIAFKDLD   81 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHH---HHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhh---hhcccccccccccccCcccccccCCce
Confidence            7999995 9999999987752  133    26778887654322111110   011111 11112233467889999999


Q ss_pred             EEEEccC
Q 016620          239 VISLHPV  245 (386)
Q Consensus       239 iVvl~lP  245 (386)
                      +|+++..
T Consensus        82 vVVitag   88 (154)
T d5mdha1          82 VAILVGS   88 (154)
T ss_dssp             EEEECCS
T ss_pred             EEEEecc
Confidence            9999863

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.53  E-value=0.86  Score=36.59  Aligned_cols=39  Identities=26%  Similarity=0.227  Sum_probs=31.0

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      -.|.+|.|+|.|.+|...+..+++..+.+|++.|++..+
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~r   65 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDK   65 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHH
Confidence            478899999999999999988643444479999987654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.49  E-value=0.17  Score=44.32  Aligned_cols=40  Identities=25%  Similarity=0.286  Sum_probs=34.3

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ..++||++.|.|. +.||+++|+.|+ .-|++|++.+++...
T Consensus         6 ~~lk~Kv~lITGas~GIG~aiA~~la-~~G~~Vv~~~r~~~~   46 (257)
T d1xg5a_           6 ERWRDRLALVTGASGGIGAAVARALV-QQGLKVVGCARTVGN   46 (257)
T ss_dssp             GGGTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            3499999999987 789999999985 689999999987643

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.49  E-value=0.062  Score=41.78  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=28.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      +++.|||.|.||-++|..| +.+|.+|..+.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l-~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFL-AGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHH-hhcCCeEEEEEec
Confidence            5799999999999999998 6899999988754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.38  E-value=0.088  Score=40.60  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=29.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +++.|||-|.||-.+|..| ..+|++|..+.+..
T Consensus        23 ~~i~IiG~G~ig~E~A~~l-~~~G~~Vtiv~~~~   55 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVW-ARLGAEVTVLEAMD   55 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CeEEEECCChHHHHHHHHH-HHcCCceEEEEeec
Confidence            7899999999999999998 58999999887654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.37  E-value=0.18  Score=43.84  Aligned_cols=39  Identities=23%  Similarity=0.202  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +|+||++.|.|. +.||+++|++|+ .-|++|+..+++.+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~-~~G~~Vv~~~r~~~~   40 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLA-ARGAKVIGTATSENG   40 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            378999999986 679999999985 789999999987643

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.26  Score=42.69  Aligned_cols=38  Identities=24%  Similarity=0.267  Sum_probs=33.1

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      |.||++.|.|. +.||+++|+.|+ .-|++|+..+++...
T Consensus         4 l~gK~alITGas~GIG~aia~~la-~~G~~Vi~~~r~~~~   42 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFA-REGAKVIATDINESK   42 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            89999999876 889999999985 789999999987643

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.30  E-value=0.14  Score=44.85  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +|.||++.|.|.+ .||+++|+.|+ .-|++|+..+++.+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELA-SLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            6999999999885 69999999985 689999999987654

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=91.27  E-value=0.11  Score=42.04  Aligned_cols=64  Identities=23%  Similarity=0.372  Sum_probs=46.7

Q ss_pred             CCCeEEEEec---ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEE
Q 016620          164 KGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (386)
Q Consensus       164 ~g~~vgIvG~---G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiV  240 (386)
                      .|.+|+++|=   +++..+++..+ ..||+++....|..-..                 .........+++|.++.+|+|
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~-~~~g~~~~i~~P~~~~~-----------------~~~~~~~~~~~~ea~~~aDvi   63 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQD-----------------EENTFGTYVSMDEAVESSDVV   63 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH-HHcCCcccccCCchhhc-----------------cccceeEEEechhccccCcee
Confidence            5889999996   68999999987 57999998887743210                 001122356889999999998


Q ss_pred             EEccC
Q 016620          241 SLHPV  245 (386)
Q Consensus       241 vl~lP  245 (386)
                      ...-.
T Consensus        64 y~~r~   68 (151)
T d2at2a2          64 MLLRI   68 (151)
T ss_pred             eeeEE
Confidence            76543

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=91.23  E-value=0.17  Score=43.73  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=32.0

Q ss_pred             cCCCeEEEEecCh---hHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          163 LKGQTVGVIGAGR---IGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       163 l~g~~vgIvG~G~---IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      |+||++.|.|.+.   ||+++|+.|+ .-|++|+..+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~-~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            8999999999864   9999999985 78999998888643

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=91.18  E-value=0.1  Score=40.43  Aligned_cols=36  Identities=14%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .++++.|||.|.+|-.+|..| +..|.+|..+++...
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l-~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATA-RTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             cCCeEEEECcchhHHHHHHHh-hcccceEEEEeeccc
Confidence            357999999999999999998 578999999987653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.09  E-value=0.064  Score=44.06  Aligned_cols=36  Identities=11%  Similarity=0.295  Sum_probs=30.6

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcE-EEEEcCChh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA  200 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~-V~~~d~~~~  200 (386)
                      .+++|.|||.|..|-..|..| ...|++ |.++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l-~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFL-ARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHH-HHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHH-HHCCCCeEEEEEecCc
Confidence            578999999999999999998 468884 888987643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=91.04  E-value=0.11  Score=40.30  Aligned_cols=36  Identities=25%  Similarity=0.278  Sum_probs=31.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ..+++|.|||.|.+|-.+|..| ...|.+|..+++..
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l-~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAF-AKAGKKVTVIDILD   63 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             cCCCEEEEECChHHHHHHHHHh-hccceEEEEEEecC
Confidence            4578999999999999999998 57999999997754

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=91.02  E-value=0.1  Score=43.47  Aligned_cols=99  Identities=13%  Similarity=0.081  Sum_probs=57.5

Q ss_pred             cCCCeEEEE--ecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcccc---ccCCH----HHH
Q 016620          163 LKGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK---RASSM----DEV  233 (386)
Q Consensus       163 l~g~~vgIv--G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l----~el  233 (386)
                      -.|.++.|+  |.|.+|....+. ++.+|++|++..++.....+..     +.+++.+.......   ...++    .++
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiql-Ak~~Ga~vI~~v~~~~~~~~~~-----~~~~~lGad~vi~~~~~~~~~~~~~v~~~  100 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQI-GKLLNFNSISVIRDRPNLDEVV-----ASLKELGATQVITEDQNNSREFGPTIKEW  100 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHH-HHHHTCEEEEEECCCTTHHHHH-----HHHHHHTCSEEEEHHHHHCGGGHHHHHHH
T ss_pred             CCCCEEEEEeCCCchHHHHHHHH-HhhcCCeEEEEEecccccchHH-----hhhhhccccEEEeccccchhHHHHHHHHH
Confidence            357889998  678999999997 5899999998765543221110     01122232221110   01111    222


Q ss_pred             h----hhCCEEEEccCCChhhhhcccHHHHhcCCCCcEEEEcCC
Q 016620          234 L----READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (386)
Q Consensus       234 l----~~aDiVvl~lPlt~~t~~li~~~~~~~mk~gailIN~aR  273 (386)
                      .    ...|+|+-++..  ++    ....++.|+++..+|.++.
T Consensus       101 ~~~~g~~vdvv~D~vg~--~~----~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         101 IKQSGGEAKLALNCVGG--KS----STGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             HHHHTCCEEEEEESSCH--HH----HHHHHHTSCTTCEEEECCC
T ss_pred             HhhccCCceEEEECCCc--ch----hhhhhhhhcCCcEEEEECC
Confidence            1    237888877641  21    1556788999999998863

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=91.02  E-value=0.12  Score=41.26  Aligned_cols=36  Identities=19%  Similarity=0.295  Sum_probs=29.8

Q ss_pred             CCCeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCCh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  199 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~  199 (386)
                      +||+|.|||.|.+|-.+|..|++ ....+|+.+++..
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            58999999999999999998853 2346899998765

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.98  E-value=0.19  Score=43.80  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMV-AEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            389999999988 669999999985 789999999987653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.92  E-value=0.12  Score=44.91  Aligned_cols=38  Identities=29%  Similarity=0.323  Sum_probs=33.4

Q ss_pred             cCCCeEEEEecCh-hHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~-IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      |.||++.|.|.+. ||+++|+.|+ ..|++|+..+|+...
T Consensus         3 l~gK~alItGas~GIG~aia~~l~-~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFA-REGASLVAVDREERL   41 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            8999999998855 9999999985 789999999987654

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.90  E-value=0.062  Score=41.80  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=30.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      +++.|||.|-||-.+|..+ ..+|++|....+...
T Consensus        26 ~~~viiG~G~iglE~A~~~-~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVW-GRIGSEVTVVEFASE   59 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CeEEEEccchHHHHHHHHH-HhcCCeEEEEEEccc
Confidence            6899999999999999998 689999999987543

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=90.69  E-value=0.23  Score=40.13  Aligned_cols=75  Identities=21%  Similarity=0.434  Sum_probs=47.1

Q ss_pred             cCCCeEEEEec---ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          163 LKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       163 l~g~~vgIvG~---G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      +.|.+|+++|=   |++..+++..+ ..|| ..+++..|......+....    .++..+   .......++++++.++|
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l-~~~~~~~~~~~~P~~~~~~~~~~~----~~~~~~---~~~~~~~d~~~a~~~aD   73 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKG---IAWSLHSSIEEVMAEVD   73 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHH----HHHHTT---CCEEECSCSTTTGGGCS
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHH-HHcCCCeEEeeccchhhhhHHHHH----HHhhhc---cccccccCHHHHhCcCc
Confidence            67999999996   66999999986 5786 4566666543221111100    111212   22334578899999999


Q ss_pred             EEEEccC
Q 016620          239 VISLHPV  245 (386)
Q Consensus       239 iVvl~lP  245 (386)
                      +|...-.
T Consensus        74 vvy~~~~   80 (160)
T d1ekxa2          74 ILYMTRV   80 (160)
T ss_dssp             EEEECCC
T ss_pred             eEEeecc
Confidence            9986543

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.62  E-value=0.31  Score=39.38  Aligned_cols=38  Identities=21%  Similarity=0.217  Sum_probs=30.5

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~  201 (386)
                      -.|.+|.|+|.|.+|...++.+ +.+|+ +|++.+++...
T Consensus        27 ~~G~tVlI~GaGGvG~~aiq~a-k~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          27 EPGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDK   65 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCCEEEEecchhHHHHHHHHH-HHHhcCceEEEcccHHH
Confidence            3688999999999999999885 77886 67777776544

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=90.54  E-value=0.09  Score=41.09  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.3

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      .+++.|||.|.||-.+|..+ ..+|.+|..+.+..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~-~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVY-STLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHh-hcCCCEEEEEEeec
Confidence            37899999999999999998 68999999998754

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=90.52  E-value=0.13  Score=44.81  Aligned_cols=38  Identities=21%  Similarity=0.211  Sum_probs=32.9

Q ss_pred             cCCCeEEEEec-Ch--hHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~--IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      |+||++.|.|. |.  ||+++|+.|+ .-|++|+..+++..+
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la-~~Ga~Vil~~~~~~~   44 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQ-EQGAQLVLTGFDRLR   44 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHH-HTTCEEEEEECSCHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH-HcCCEEEEEeCChHH
Confidence            89999999996 55  9999999984 789999998887654

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=90.52  E-value=0.24  Score=43.25  Aligned_cols=39  Identities=23%  Similarity=0.342  Sum_probs=32.6

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~  202 (386)
                      |+||++.|.|. +.||+++|+.|+ .-|++|+..+++....
T Consensus         2 L~gK~alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~   41 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAE   41 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCcHHH
Confidence            78999999877 559999999985 7899999999875443

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=90.39  E-value=0.23  Score=40.00  Aligned_cols=113  Identities=18%  Similarity=0.156  Sum_probs=58.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhc--CCc----EEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCC
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~--fg~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aD  238 (386)
                      .+|.|+|. |.+|+.+|-.|+.+  ++.    ....++........+- ... .................+..+.+++||
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ad   82 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEG-VVM-ELEDCAFPLLAGLEATDDPKVAFKDAD   82 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHH-HHH-HHHTTTCTTEEEEEEESCHHHHTTTCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcC-chh-hhhccccccccccccCCchhhhccccc
Confidence            38999996 99999999887531  331    2333443322211110 000 000111111122333467889999999


Q ss_pred             EEEEccCCC--hh-hh-hcc--c--------HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 016620          239 VISLHPVLD--KT-TY-HLI--N--------KERLATMKKEAILVNCSRGPVIDEVAL  282 (386)
Q Consensus       239 iVvl~lPlt--~~-t~-~li--~--------~~~~~~mk~gailIN~aRg~~vde~aL  282 (386)
                      +|+++.-..  +. ++ .++  |        ...-+..+++++++.++.  .+|.-..
T Consensus        83 vViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          83 YALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             EEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            999986322  21 22 122  1        112222467888888864  5665443

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.38  E-value=0.17  Score=47.89  Aligned_cols=100  Identities=20%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             ccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCChhh--HH-HHH-----------HhhhhhhhhhcC-CCCcccc
Q 016620          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--RL-EKF-----------VTAYGQFLKANG-EQPVTWK  225 (386)
Q Consensus       162 ~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~~~~--~~-~~~-----------~~~~~~~~~~~~-~~~~~~~  225 (386)
                      .|++++|.|||+|.+|..+++.|+ ..|. ++..+|...-.  .+ +++           .+...+.+.... .......
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~-~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~  112 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLA-LSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  112 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHH-TTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEee
Confidence            378899999999999999999985 4565 68888854321  00 010           000001111110 0000000


Q ss_pred             --c-cCCHHHHhhhCCEEEEccCCChhhhhcccHHHHhcCC
Q 016620          226 --R-ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (386)
Q Consensus       226 --~-~~~l~ell~~aDiVvl~lPlt~~t~~li~~~~~~~mk  263 (386)
                        . ....++.++++|+|+.|+. +.+++.+++...+...+
T Consensus       113 ~~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         113 FNKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CSCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             eccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence              0 1123578899999998886 56788888888776544

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.35  E-value=0.19  Score=43.61  Aligned_cols=40  Identities=25%  Similarity=0.240  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhH
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~  202 (386)
                      .|.||++.|.|. +.||+++|+.|+ .-|++|+..|++....
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~   42 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFA-VEGADIAIADLVPAPE   42 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCchHH
Confidence            489999999988 569999999985 7899999999876543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.21  E-value=0.13  Score=45.24  Aligned_cols=39  Identities=28%  Similarity=0.275  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ ..|++|+..+++...
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFA-GFGAVIHTCARNEYE   44 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            689999999987 559999999985 789999999987654

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.10  E-value=0.16  Score=39.08  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=30.1

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ++++.|+|.|.+|-++|..| ..+|.+|..+++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNL-AEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHh-hcccceEEEEeccc
Confidence            36899999999999999998 58999999998754

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=89.98  E-value=0.1  Score=45.16  Aligned_cols=33  Identities=21%  Similarity=0.450  Sum_probs=29.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ++|.|.|. |-||+.+++.| +.-|.+|++.|++.
T Consensus         2 MKIlItGasGfiG~~l~~~L-~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQL-KGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHH-TTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEeechh
Confidence            57999997 99999999998 68899999999754

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.92  E-value=0.16  Score=42.15  Aligned_cols=69  Identities=14%  Similarity=0.120  Sum_probs=41.9

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEE
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiV  240 (386)
                      +||.|.| .|.||+.+++.|. .-|  ..|+...|++.....         + ..+..-.  ......++.++++.+|.|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll-~~g~~v~v~~~~R~~~~~~~---------~-~~~~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGKEK---------I-GGEADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHH-HTTTTCEEEEEESCHHHHHH---------T-TCCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHH-HCCCcEEEEEEcCCHHHHHh---------c-cCCcEEEEeeeccccccccccccceee
Confidence            5899998 5999999999985 445  566666776543211         0 0010000  011123456678899999


Q ss_pred             EEccC
Q 016620          241 SLHPV  245 (386)
Q Consensus       241 vl~lP  245 (386)
                      +.+..
T Consensus        73 i~~a~   77 (252)
T d2q46a1          73 VILTS   77 (252)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            87764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.77  E-value=0.22  Score=43.87  Aligned_cols=39  Identities=18%  Similarity=0.157  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ ..|++|+..+++.+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la-~~Ga~V~l~~r~~~~   41 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFA-QEGANVTITGRSSER   41 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            389999999987 679999999985 789999999987653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=89.58  E-value=0.36  Score=42.01  Aligned_cols=37  Identities=19%  Similarity=0.033  Sum_probs=30.7

Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       162 ~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +|+||++.|.|.+ .||+++|+.|+ .-|++|+...++.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la-~~G~~vii~~r~~   39 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELV-KRNLKNFVILDRV   39 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTCCSEEEEEESS
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHH-HCCCEEEEEECCc
Confidence            4899999999885 69999999985 7899887775544

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=89.33  E-value=0.34  Score=43.98  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=26.8

Q ss_pred             CeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       166 ~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      |+|.|.| .|-||+.+++.|. ..|.+|++.|+..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll-~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLL-EKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCcCEEEEEECCC
Confidence            5667887 7999999999984 6799999999864

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.33  E-value=0.5  Score=40.91  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|.||++.|.|. +.||+++|+.|+ ..|++|+.++++.+.
T Consensus         7 ~lenKvalITGas~GIG~a~a~~la-~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           7 CGENKVALVTGAGRGIGREIAKMLA-KSVSHVICISRTQKS   46 (251)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHT-TTSSEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            588999999987 679999999984 789999999987653

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.24  E-value=0.14  Score=39.00  Aligned_cols=33  Identities=18%  Similarity=0.248  Sum_probs=29.8

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +++.|+|-|.+|-.+|..| ..+|.+|..+++..
T Consensus        22 ~~vvIiGgG~~G~E~A~~l-~~~g~~Vtlve~~~   54 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAY-RKLGAQVSVVEARE   54 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHH-hhcccceEEEeeec
Confidence            7899999999999999998 58999999998754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=89.24  E-value=0.4  Score=41.62  Aligned_cols=39  Identities=21%  Similarity=0.154  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   42 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFV-EEGAKVMITGRHSDV   42 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999986 669999999985 789999999987643

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.35  Score=43.17  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ .-|++|++.+|+...
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la-~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            399999999987 569999999985 789999999997654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.11  E-value=0.24  Score=43.21  Aligned_cols=39  Identities=21%  Similarity=0.427  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ .-|++|+..|++...
T Consensus         3 rL~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~~~~~~   42 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEAA   42 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999986 569999999985 789999999987643

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=89.07  E-value=0.2  Score=39.27  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=31.7

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+++|.|||-|.+|-++|..| ...|.+|.++++...
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l-~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATA-IKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHH-HhhCcceeeeeeccc
Confidence            468999999999999999998 578999999987653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=0.26  Score=42.91  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=32.5

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +.||++.|.|. +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         1 i~GKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALL-LKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            46899999987 669999999985 789999999988654

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=88.86  E-value=0.4  Score=39.60  Aligned_cols=103  Identities=14%  Similarity=0.086  Sum_probs=63.5

Q ss_pred             ccCCCeEEEEecC--hhHHHHHHHHHhcCCcEEEEEcCChhh---HHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhh
Q 016620          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQAT---RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (386)
Q Consensus       162 ~l~g~~vgIvG~G--~IG~~iA~~L~~~fg~~V~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~  236 (386)
                      .+.|.+|+++|=|  ++..+++..+ .-||+++.+..|..-.   ........+   ...   .+.......++++.+..
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~-~~~g~~l~~~~P~~~~~~~~~~~~~~~~---~~~---~g~~~~~~~d~~~a~~~   74 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRAL---AQQ---NGGNITLTEDVAKGVEG   74 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHH---HHH---TTCEEEEESCHHHHHTT
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEEechHhhhhHHHHHHHHHH---HHh---cCCceEEEechhhcccc
Confidence            5788999999955  6889999987 5799999999875321   111111100   111   11223345789999999


Q ss_pred             CCEEEEccCCChh--------------hhhcccHHHHhcCCCCcEEEEc
Q 016620          237 ADVISLHPVLDKT--------------TYHLINKERLATMKKEAILVNC  271 (386)
Q Consensus       237 aDiVvl~lPlt~~--------------t~~li~~~~~~~mk~gailIN~  271 (386)
                      +|+|..-.-....              ....++......+++.++|.-+
T Consensus        75 aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~  123 (183)
T d1duvg2          75 ADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHC  123 (183)
T ss_dssp             CSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEEC
T ss_pred             CCEEEEEehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEcc
Confidence            9999876543210              0123344455566777777665

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=88.79  E-value=0.26  Score=42.38  Aligned_cols=34  Identities=21%  Similarity=0.228  Sum_probs=29.2

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ++|.|+|. |.||+.+++.|. .-|.+|++.+|...
T Consensus         4 kKILVtGatG~iG~~l~~~L~-~~G~~V~~l~R~~~   38 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASL-DLGHPTFLLVREST   38 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHH-HCCCeEEEEECCCc
Confidence            67999996 999999999984 67999999998654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=88.74  E-value=0.29  Score=42.66  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYV-REGARVAIADINLEA   41 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHH-HTTEEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            388999999987 789999999985 789999999987643

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=88.69  E-value=0.61  Score=40.63  Aligned_cols=39  Identities=21%  Similarity=0.418  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|.||++.|.|. +.||+++|+.|+ .-|++|+..|++...
T Consensus         3 rL~gKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   42 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFV-RYGAKVVIADIADDH   42 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999986 569999999985 789999999987643

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=88.55  E-value=0.15  Score=45.02  Aligned_cols=39  Identities=18%  Similarity=0.164  Sum_probs=33.5

Q ss_pred             cccCCCeEEEEecC---hhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       161 ~~l~g~~vgIvG~G---~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ..|+||++.|.|.+   .||+++|+.|+ ..|++|+..++...
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la-~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLA-AAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHH-HTTCEEEEEEEHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCchh
Confidence            46999999999986   59999999985 78999998887543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.52  E-value=0.19  Score=43.88  Aligned_cols=39  Identities=18%  Similarity=0.083  Sum_probs=31.6

Q ss_pred             cccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       161 ~~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      +.|.||++.|.|. +.||+++|+.|+ .-|++|+..+++..
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la-~~G~~Vvi~~~~~~   41 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSS   41 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEcCCCh
Confidence            5799999999987 559999999985 78999987544433

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.46  E-value=0.2  Score=43.84  Aligned_cols=39  Identities=21%  Similarity=0.270  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFA-TAGASVVVSDINADA   47 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999987 679999999985 789999999987643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=88.42  E-value=0.099  Score=45.44  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=31.5

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCc-EEEEEcCC
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~-~V~~~d~~  198 (386)
                      ..|++++|.|+|+|.+|..+|+.|+ ..|. ++..+|..
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCc
Confidence            3599999999999999999999985 5676 78888854

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=88.22  E-value=0.37  Score=42.42  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=34.0

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ .-|++|+..+|+.+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFV-AEGAKVAVLDKSAER   41 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            389999999987 789999999985 789999999987643

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.00  E-value=0.29  Score=42.96  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=32.6

Q ss_pred             CCCeEEEE--ecChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       164 ~g~~vgIv--G~G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      +|++|.||  |-+.||+++|+.|++..|++|+.++|+.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            58999988  778999999999865568999999998754

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=87.78  E-value=0.36  Score=39.57  Aligned_cols=44  Identities=20%  Similarity=0.345  Sum_probs=30.7

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhh
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY  210 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~  210 (386)
                      +|||=|||+||+.+.|.+...-..+|.+.+.....+.-.+.-.|
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~y   46 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKY   46 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHC
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhhee
Confidence            69999999999999998644446888887654444333333333

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=87.64  E-value=0.3  Score=40.52  Aligned_cols=38  Identities=21%  Similarity=0.329  Sum_probs=33.6

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ....+|+|.|||.|..|-+.|..| ...|.+|..|++..
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~l-a~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINA-AARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHH-HTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHH-HhhccceEEEeccC
Confidence            456789999999999999999997 57899999999764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.60  E-value=0.41  Score=41.76  Aligned_cols=39  Identities=13%  Similarity=0.080  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      .|+||++.|.|. +.||+++|+.|+ .-|++|+..+|+...
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFA-REGAKVTITGRHAER   41 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            489999999976 789999999985 789999999997654

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.46  E-value=0.21  Score=39.14  Aligned_cols=28  Identities=21%  Similarity=0.507  Sum_probs=23.1

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY  194 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~  194 (386)
                      ++|+|+|+ |+||+.+++.+ ..-|+++.+
T Consensus         1 mki~i~G~~GrMG~~i~~~~-~~~~~~l~~   29 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVF-SEKGHELVL   29 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-hcCCCeEEE
Confidence            47999996 99999999986 577887653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=87.32  E-value=0.3  Score=42.45  Aligned_cols=81  Identities=14%  Similarity=0.118  Sum_probs=46.9

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCc--cccccCCHHHHhhhCCEEEE
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~ell~~aDiVvl  242 (386)
                      ++|.|+|. |.||+.+++.| ..-|.+|++.+|............. ..+...+..-.  ......++.+.++.+|.++.
T Consensus         4 ~KILVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~~~~~~~~-~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNAS-ISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCcccchhHHHHH-hhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            46999995 99999999987 4679999999886432111000000 00111111100  01112345677889999988


Q ss_pred             ccCCCh
Q 016620          243 HPVLDK  248 (386)
Q Consensus       243 ~lPlt~  248 (386)
                      +.+...
T Consensus        82 ~~~~~~   87 (312)
T d1qyda_          82 ALAGGV   87 (312)
T ss_dssp             CCCCSS
T ss_pred             hhhhcc
Confidence            876544

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=87.31  E-value=0.58  Score=40.45  Aligned_cols=38  Identities=26%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      |+||++.|.|. +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         3 l~GK~alITGas~GIG~aia~~la-~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFA-REGALVALCDLRPEG   41 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSTTH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            89999999985 789999999985 789999999987543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=87.20  E-value=0.29  Score=41.65  Aligned_cols=36  Identities=17%  Similarity=0.211  Sum_probs=31.2

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      ...++|.|||.|..|..+|..|+ ..|.+|.++++..
T Consensus         2 ~~~~kV~IiGaG~aGl~~A~~L~-~~G~~v~v~Er~~   37 (265)
T d2voua1           2 PTTDRIAVVGGSISGLTAALMLR-DAGVDVDVYERSP   37 (265)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            35678999999999999999985 6799999999754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=86.94  E-value=0.26  Score=41.48  Aligned_cols=34  Identities=21%  Similarity=0.193  Sum_probs=29.7

Q ss_pred             CCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       165 g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      -++|.|||.|-.|-+.|..|+ .-|.+|.++++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~-~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILA-RKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHH-HTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            458999999999999999984 6789999999753

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=86.77  E-value=2.4  Score=34.33  Aligned_cols=112  Identities=13%  Similarity=0.042  Sum_probs=69.8

Q ss_pred             CCcEEEEeCCCCc------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhcC-CCcEEEecCC----ccccHHHHHHh
Q 016620           14 GKYRVVSTKPMPG------TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGD-KCDGVIGQLT----EDWGETLFAAL   82 (386)
Q Consensus        14 ~~~~vlvt~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~ad~vi~~~~----~~~~~~~l~~l   82 (386)
                      .+.|||+...-++      ......|+..|+++....   ...+.+++.+...+ ++|+|.++..    ...-+++.+.|
T Consensus        36 r~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg---~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L  112 (168)
T d7reqa2          36 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGP---LFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKEL  112 (168)
T ss_dssp             SCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECC---TTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCC---CcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHH
Confidence            4567777543222      223466888898875422   23478888865544 7898887533    12334666777


Q ss_pred             hccCC-cEEEEccccccccChhHHhhCCcEEecCCCCCchhHHHHHH
Q 016620           83 SRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA  128 (386)
Q Consensus        83 ~~l~~-k~i~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~al  128 (386)
                      .++|. ++.+..|--+-.-|.+.+++.|+.-+-.||.....+|...+
T Consensus       113 ~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e~a~~~~  159 (168)
T d7reqa2         113 DKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLV  159 (168)
T ss_dssp             HHTTCTTSEEEEEESCCGGGHHHHHHHTEEEEECTTCCHHHHHHHHH
T ss_pred             HhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEEECcCCCHHHHHHHHH
Confidence            77764 34444443346778888999999988899976544444333

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=86.54  E-value=0.46  Score=41.70  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=32.9

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      |+||++.|.|. +.||+++|+.|+ .-|++|+..|++...
T Consensus         2 L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   40 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFA-KEGAQVTITGRNEDR   40 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            78999999987 569999999985 789999999987643

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.20  E-value=0.52  Score=42.17  Aligned_cols=125  Identities=14%  Similarity=0.219  Sum_probs=76.8

Q ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC---C-------cE
Q 016620          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF---K-------MN  191 (386)
Q Consensus       122 ~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f---g-------~~  191 (386)
                      .+|=-+++-+|+.+|-                     .|+.|...+|.|.|.|.-|-.+|+.+.+++   |       -+
T Consensus         3 GTa~V~lAglinAlki---------------------~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~   61 (294)
T d1pj3a1           3 GTAAVALAGLLAAQKV---------------------ISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKK   61 (294)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhcccc
Confidence            3556677778887772                     235789999999999999999999874321   2       25


Q ss_pred             EEEEcCChh---hHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhh--hCCEEEEccCCChhhhhcccHHHHh---cCC
Q 016620          192 LIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLA---TMK  263 (386)
Q Consensus       192 V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~--~aDiVvl~lPlt~~t~~li~~~~~~---~mk  263 (386)
                      ++.+|+..-   .+.. ..+.+........    ......+|+|+++  +.|+++.+..    .-++++++.++   .|.
T Consensus        62 i~lvD~~Glv~~~r~~-~~~~~k~~~a~~~----~~~~~~~L~e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~  132 (294)
T d1pj3a1          62 IWMFDKYGLLVKGRKA-KIDSYQEPFTHSA----PESIPDTFEDAVNILKPSTIIGVAG----AGRLFTPDVIRAMASIN  132 (294)
T ss_dssp             EEEEETTEECBTTCSS-CCCTTTGGGCBCC----CSSCCSSHHHHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHC
T ss_pred             EEEEeCCCCccCCCCc-ccHHHHHHhhccc----cccchhHHHHHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcC
Confidence            899987531   1100 0000000000000    0011247888876  7888877652    24677887775   456


Q ss_pred             CCcEEEEcCCCcc
Q 016620          264 KEAILVNCSRGPV  276 (386)
Q Consensus       264 ~gailIN~aRg~~  276 (386)
                      +..++.=.|....
T Consensus       133 ~~PIIFaLSNPt~  145 (294)
T d1pj3a1         133 ERPVIFALSNPTA  145 (294)
T ss_dssp             SSCEEEECCSSGG
T ss_pred             CCcEEEEccCCCC
Confidence            8999999988754

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=85.86  E-value=1.6  Score=36.29  Aligned_cols=68  Identities=19%  Similarity=0.310  Sum_probs=52.5

Q ss_pred             cCCHHHHhhhCCEEE-EccCCChhhhhcccHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEeeccC
Q 016620          227 ASSMDEVLREADVIS-LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (386)
Q Consensus       227 ~~~l~ell~~aDiVv-l~lPlt~~t~~li~~~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaalDV~~  300 (386)
                      ..+-++++.++|+|+ +..|...+    .+.+.++.||+|+++|..-.  .....+++++|.+.++...++|...
T Consensus        58 ~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~li~~l~--p~~~~~~~~~l~~~~it~~a~e~ip  126 (194)
T d1l7da2          58 ASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVLMCHLG--ALTNRPVVEALTKRKITAYAMELMP  126 (194)
T ss_dssp             ESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEEEEECC--GGGCHHHHHHHHHTTCEEEEGGGCC
T ss_pred             chhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEEEEecc--cccchhHHHHHHhcCceEEeeeccc
Confidence            456789999999886 55665433    23456788999999998754  5667889999999999999999763

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=85.57  E-value=0.25  Score=42.96  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=30.3

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      .-|+|.|||.|..|-..|..|+ ..|.+|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~-~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLA-GAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHH-HHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            4578999999999999999985 5699999998753

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.36  E-value=0.37  Score=40.53  Aligned_cols=33  Identities=18%  Similarity=0.301  Sum_probs=28.8

Q ss_pred             eEEEEecChhHHHHHHHHHh-cCCcEEEEEcCCh
Q 016620          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  199 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~  199 (386)
                      +|+|||.|.-|-..|..|++ .+|.+|.+|++..
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            79999999999999987754 5899999998764

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.33  E-value=0.26  Score=42.59  Aligned_cols=38  Identities=18%  Similarity=0.110  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEecC-hhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       162 ~l~g~~vgIvG~G-~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      +|.||++.|.|.+ .||+++|+.|+ ..|++|+..+|+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la-~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLA-ADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCcc
Confidence            5899999999885 59999999985 78999999998754

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=85.23  E-value=0.53  Score=42.22  Aligned_cols=77  Identities=16%  Similarity=0.182  Sum_probs=46.6

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCcc---ccccCCHHHHhhhCCEE
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT---WKRASSMDEVLREADVI  240 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~ell~~aDiV  240 (386)
                      -|||.|+|. |.||+++++.|. .-|.+|.+..|+...........      ..+..-..   ......++.++..+|.+
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll-~~G~~V~~l~R~~~~~~~~~~~~------~~~v~~~~gD~~d~~~~~~~a~~~~~~~   75 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAA-AVGHHVRAQVHSLKGLIAEELQA------IPNVTLFQGPLLNNVPLMDTLFEGAHLA   75 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHH-HTTCCEEEEESCSCSHHHHHHHT------STTEEEEESCCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHH-hCCCeEEEEECCcchhhhhhhcc------cCCCEEEEeeCCCcHHHHHHHhcCCceE
Confidence            478999985 999999999984 67889988877654322111110      00100000   00011256678899998


Q ss_pred             EEccCCCh
Q 016620          241 SLHPVLDK  248 (386)
Q Consensus       241 vl~lPlt~  248 (386)
                      +...+...
T Consensus        76 ~~~~~~~~   83 (350)
T d1xgka_          76 FINTTSQA   83 (350)
T ss_dssp             EECCCSTT
T ss_pred             Eeeccccc
Confidence            88776543

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.13  E-value=0.26  Score=41.99  Aligned_cols=77  Identities=14%  Similarity=0.147  Sum_probs=47.3

Q ss_pred             cCCCeEEEEec-ChhHHHHHHHHHhcCC--cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCE
Q 016620          163 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (386)
Q Consensus       163 l~g~~vgIvG~-G~IG~~iA~~L~~~fg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDi  239 (386)
                      ..+++|.|.|. |-||+.+++.|.+ -|  .+|++++|++.........       .............++.+.+..+|+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~-~g~~~~v~~~~R~~~~~~~~~~~-------~i~~~~~D~~~~~~~~~~~~~~d~   83 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGRRKLTFDEEAYK-------NVNQEVVDFEKLDDYASAFQGHDV   83 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHH-HTCCSEEEEEESSCCCCCSGGGG-------GCEEEECCGGGGGGGGGGGSSCSE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHh-CCCCCEEEEEecChhhhcccccc-------eeeeeeeccccccccccccccccc
Confidence            56789999986 9999999998743 34  3899998865432111100       000000011123456677899999


Q ss_pred             EEEccCCC
Q 016620          240 ISLHPVLD  247 (386)
Q Consensus       240 Vvl~lPlt  247 (386)
                      |+.|+..+
T Consensus        84 vi~~~~~~   91 (232)
T d2bkaa1          84 GFCCLGTT   91 (232)
T ss_dssp             EEECCCCC
T ss_pred             cccccccc
Confidence            99887543

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=85.09  E-value=0.94  Score=40.61  Aligned_cols=124  Identities=19%  Similarity=0.171  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhc---CC-------cE
Q 016620          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG---FK-------MN  191 (386)
Q Consensus       122 ~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~---fg-------~~  191 (386)
                      .+|=-+++-+++.+|-                     .|+.|...+|.|+|.|.-|-.+|+.|...   -|       -+
T Consensus         3 GTa~V~lAglinAlki---------------------~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~   61 (308)
T d1o0sa1           3 GTASVIVAGLLTCTRV---------------------TKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNR   61 (308)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhce
Confidence            3455677777777772                     23568899999999999999999987422   12       14


Q ss_pred             EEEEcCChhhHHH-HHHhhhhhhhhhcCCCCccccccCCHHHHhhhC--CEEEEccCCChhhhhcccHHHHhcC---CCC
Q 016620          192 LIYYDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATM---KKE  265 (386)
Q Consensus       192 V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a--DiVvl~lPlt~~t~~li~~~~~~~m---k~g  265 (386)
                      ++.+|+..--... .....+      ............++.++++..  ++++.+.-    ..++++++.++.|   .+.
T Consensus        62 i~~vD~~Glv~~~r~d~~~~------k~~~a~~~~~~~~l~~~i~~~kptvliG~s~----~~g~ft~evv~~Ma~~~~~  131 (308)
T d1o0sa1          62 IYLMDIDGLVTKNRKEMNPR------HVQFAKDMPETTSILEVIRAARPGALIGAST----VRGAFNEEVIRAMAEINER  131 (308)
T ss_dssp             EEEEETTEECBTTCSSCCGG------GTTTCBSSCCCCCHHHHHHHHCCSEEEECSS----CTTCSCHHHHHHHHHHCSS
T ss_pred             EEEEeCCCCccCCCcccCHH------HHHHHHhcccCCcHHHHHhccccccEEeccc----ccCCCCHHHHHHHHhhCCC
Confidence            8888865321000 000000      000011111235677877654  56665542    2577888887666   488


Q ss_pred             cEEEEcCCCcc
Q 016620          266 AILVNCSRGPV  276 (386)
Q Consensus       266 ailIN~aRg~~  276 (386)
                      .++.=.|....
T Consensus       132 PIIFaLSNPtp  142 (308)
T d1o0sa1         132 PIIFALSNPTS  142 (308)
T ss_dssp             CEEEECCSSGG
T ss_pred             cEEEEccCCCC
Confidence            89988888654

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=84.84  E-value=0.83  Score=39.80  Aligned_cols=96  Identities=14%  Similarity=0.121  Sum_probs=57.9

Q ss_pred             cCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEE
Q 016620          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (386)
Q Consensus       163 l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl  242 (386)
                      ..|++|++||+-    +..+++ +.-+++++++++++..-                .     .....-++++.+||+|++
T Consensus       120 ~~g~kV~vIG~~----P~v~~l-~~~~~~~~VlE~~p~~g----------------d-----~p~~~~~~lLp~aD~vii  173 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESL-LEPICDLSILEWSPEEG----------------D-----YPLPASEFILPECDYVYI  173 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHH-HTTTSEEEEEESSCCTT----------------C-----EEGGGHHHHGGGCSEEEE
T ss_pred             cCCCEEEEEecc----hhHHHH-HhcCCcEEEEeCCCCCC----------------C-----CCchHHHHhhhcCCEEEE
Confidence            579999999875    344444 45678999999876431                0     111235677888888877


Q ss_pred             ccCCChhhhhccc---HHHHhcCCCCcEEEEcCC------------------CcccCHHHHHHHHHcCC
Q 016620          243 HPVLDKTTYHLIN---KERLATMKKEAILVNCSR------------------GPVIDEVALVEHLKQNP  290 (386)
Q Consensus       243 ~lPlt~~t~~li~---~~~~~~mk~gailIN~aR------------------g~~vde~aL~~aL~~g~  290 (386)
                      .--      -++|   +..+++.|+...+|=+|=                  -.+.|.+.+.+.++.|.
T Consensus       174 TGs------TlvN~Tl~~LL~~~~~a~~vvl~GPS~p~~P~lf~~Gv~~lag~~v~d~~~~~~~i~~Gg  236 (251)
T d2h1qa1         174 TCA------SVVDKTLPRLLELSRNARRITLVGPGTPLAPVLFEHGLQELSGFMVKDNARAFRIVAGAE  236 (251)
T ss_dssp             ETH------HHHHTCHHHHHHHTTTSSEEEEESTTCCCCGGGGGTTCSEEEEEEESCHHHHHHHHTTSS
T ss_pred             Eec------hhhcCCHHHHHHhCCcCCEEEEECCCcccCHHHHhcCCceEeEEEEeCHHHHHHHHHcCC
Confidence            641      1222   346666666654432211                  11477777777777663

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=84.84  E-value=0.32  Score=36.47  Aligned_cols=37  Identities=24%  Similarity=0.394  Sum_probs=30.1

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      .+.+||+|.|||.|.-|..+|.-| ...+.++++..++
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l-~~~ak~v~~~~~r   64 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHL-TPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHH-TTTSCSSEEEECT
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHH-HHhcCEEEEEEec
Confidence            568999999999999999999987 4666776555443

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=84.69  E-value=0.67  Score=37.96  Aligned_cols=112  Identities=14%  Similarity=0.214  Sum_probs=57.6

Q ss_pred             eEEEEecChhHHHHHHHHHh--cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEcc
Q 016620          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~--~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~l  244 (386)
                      +|||=|||+||+.+.|.+..  ..+.+|.+.+.....+.-.+.-.|++.   .|..+....         ..-|.+++  
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~---hG~~~~~v~---------~~~~~l~i--   67 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSV---HKKFPGKVE---------YTENSLIV--   67 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTT---TCCCSSCEE---------ECSSEEEE--
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhcccc---ccccCceEE---------EECCEEEE--
Confidence            79999999999999997642  345787777544333333343333321   122211111         11233333  


Q ss_pred             CCChhhhhcccHHHHhcCC---CCc-EEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016620          245 VLDKTTYHLINKERLATMK---KEA-ILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (386)
Q Consensus       245 Plt~~t~~li~~~~~~~mk---~ga-ilIN~aRg~~vde~aL~~aL~~g~i~gaal  296 (386)
                        +.....+++....+.++   -|+ ++|.+ +|.--+.+.+..-|+.| ..-..+
T Consensus        68 --ng~~I~~~~~~~p~~i~W~~~gvD~ViEc-TG~f~t~~~~~~hl~~G-akkVii  119 (169)
T d1hdgo1          68 --DGKEIKVFAEPDPSKLPWKDLGVDFVIES-TGVFRNREKAELHLQAG-AKKVII  119 (169)
T ss_dssp             --TTEEEEEECCSSGGGSCHHHHTCCEEEEC-SSSCCBHHHHTHHHHTT-CSEEEE
T ss_pred             --CCEEEEEEeCCChhhCCccccCCCEEEEe-cceeccccchhhhccCC-CceEEE
Confidence              12223333322222221   133 55554 66767778888888766 344333

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=84.65  E-value=1.1  Score=40.02  Aligned_cols=74  Identities=19%  Similarity=0.375  Sum_probs=48.1

Q ss_pred             ccCCCeEEEEec---ChhHHHHHHHHHhcCC-cEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhC
Q 016620          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       162 ~l~g~~vgIvG~---G~IG~~iA~~L~~~fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~a  237 (386)
                      .+.|.+|+++|-   +++..+.+..+ ..|| +++..+.|..-...+...+.    .+.   ....+....++++.++++
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~-~~~~~~~~~i~~P~~~~~~~~~~~~----~~~---~~~~~~~~~d~~~a~~~a  222 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILDM----LDE---KGIAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHHH----HHT---TTCCEEEESCGGGTTTTC
T ss_pred             CcccceEEEEeccccCcchHHHHHHH-HhccCceEEEeCCcccccchhcccc----ccc---ccceeeeeechhhhccCC
Confidence            389999999997   77888888876 5774 78888877432111111110    111   122234457899999999


Q ss_pred             CEEEEc
Q 016620          238 DVISLH  243 (386)
Q Consensus       238 DiVvl~  243 (386)
                      |+|...
T Consensus       223 Dvvy~~  228 (310)
T d1tuga1         223 DILYMT  228 (310)
T ss_dssp             SEEEEC
T ss_pred             ceeeec
Confidence            999754

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.63  E-value=0.75  Score=41.00  Aligned_cols=37  Identities=32%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      .|.||++.|-|. +.||+++|+.|+ .-|++|+..|+..
T Consensus         4 ~l~gKvalITGas~GIG~aiA~~la-~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           4 RFDGRVVLVTGAGGGLGRAYALAFA-ERGALVVVNDLGG   41 (302)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECCCB
T ss_pred             CcCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCc
Confidence            589999999988 569999999985 7899999998754

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.62  E-value=0.96  Score=39.01  Aligned_cols=35  Identities=34%  Similarity=0.327  Sum_probs=27.3

Q ss_pred             CeEE-EEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          166 QTVG-VIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       166 ~~vg-IvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      |+|. |.|. +.||+++|+.|+ ..|++|+..+++...
T Consensus         1 KKValITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDAT   37 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            4554 4565 569999999985 689999999997643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.62  E-value=0.67  Score=39.22  Aligned_cols=39  Identities=23%  Similarity=0.253  Sum_probs=33.4

Q ss_pred             cccCCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       161 ~~l~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      ..-.+++|.|||.|..|-..|..| +..|.+|..+++...
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l-~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVL-MESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHH-HHhccceeeEeeccc
Confidence            345889999999999999999997 578999999987543

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=84.57  E-value=0.78  Score=41.01  Aligned_cols=81  Identities=15%  Similarity=0.105  Sum_probs=47.8

Q ss_pred             ccCCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcC---CCCccccccCCHHHHhhhC
Q 016620          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG---EQPVTWKRASSMDEVLREA  237 (386)
Q Consensus       162 ~l~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~ell~~a  237 (386)
                      ...||+|.|.|. |-||+.+++.|. ..|.+|++..|+.... ......+........   ... ......++++++..+
T Consensus         8 ~~~gk~VlVTG~sGfIGs~l~~~Ll-~~G~~V~~~vR~~~~~-~~~~~~~~~~~~~~~~~~~~~-Dl~~~~~~~~~~~~~   84 (342)
T d1y1pa1           8 LPEGSLVLVTGANGFVASHVVEQLL-EHGYKVRGTARSASKL-ANLQKRWDAKYPGRFETAVVE-DMLKQGAYDEVIKGA   84 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSHHHH-HHHHHHHHHHSTTTEEEEECS-CTTSTTTTTTTTTTC
T ss_pred             CCCcCEEEEECCCCHHHHHHHHHHH-HCcCEEEEEeCCchhH-HHHHHhhhccccccccEEEec-cccchhhhhhhcccc
Confidence            357999999976 889999999874 6799999887765431 111100000000000   000 011234667788999


Q ss_pred             CEEEEccC
Q 016620          238 DVISLHPV  245 (386)
Q Consensus       238 DiVvl~lP  245 (386)
                      |+|+.+.-
T Consensus        85 ~~v~~~a~   92 (342)
T d1y1pa1          85 AGVAHIAS   92 (342)
T ss_dssp             SEEEECCC
T ss_pred             hhhhhhcc
Confidence            99876544

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.50  E-value=0.43  Score=42.77  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=30.5

Q ss_pred             CCCeEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       164 ~g~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +.|+|.|||.|-.|..+|..|+ .-|.+|++++.+.
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~-k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLA-EKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-TTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHH-hCCCCEEEEECCC
Confidence            3689999999999999999985 5699999998754

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=84.34  E-value=0.42  Score=39.17  Aligned_cols=113  Identities=17%  Similarity=0.189  Sum_probs=61.2

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEccC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~lP  245 (386)
                      .+|||=|||+||+.+.|.+ ..-+.+|.+.+.......-.+.-.|++.   .|..+.      .   +-...|.+++   
T Consensus         1 ikigINGfGRIGR~~~R~l-~~~~i~iv~INd~~~~~~~ayLl~yDS~---hG~~~~------~---v~~~~~~l~i---   64 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRIL-HSRGVEVALINDLTDNKTLAHLLKYDSI---YHRFPG------E---VAYDDQYLYV---   64 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHHTCCEEEEECSSCHHHHHHHHHCCTT---TCSCSS------C---EEECSSEEEE---
T ss_pred             CEEEEECCcHHHHHHHHHH-hcCCCEEEEECCCcchhhhhheeecccc---cCcccc------c---cccccceeEe---
Confidence            3799999999999999876 4446777776543333333343333321   111111      1   1123354443   


Q ss_pred             CChhhhhcccH---HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016620          246 LDKTTYHLINK---ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (386)
Q Consensus       246 lt~~t~~li~~---~~~~~mk~gailIN~aRg~~vde~aL~~aL~~g~i~gaal  296 (386)
                       +.....+...   +.+..-+-|.-+|==+.|.-.+.+.+..-|+.| .....+
T Consensus        65 -~g~~I~~~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkVii  116 (168)
T d2g82a1          65 -DGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVII  116 (168)
T ss_dssp             -TTEEEEEECCSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEE
T ss_pred             -cceeEEEEecCChHHCcccccCCceeEeccccccchHHhhhhhccc-cceeee
Confidence             1122233322   233333345555555678888888888888865 444444

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=84.25  E-value=0.69  Score=37.88  Aligned_cols=44  Identities=25%  Similarity=0.415  Sum_probs=29.8

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEc-CChhhHHHHHHhhh
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAY  210 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d-~~~~~~~~~~~~~~  210 (386)
                      +|||=|||+||+.+.|.+...-..++.+.+ +......-.+.-.|
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlky   47 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQY   47 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHC
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhh
Confidence            799999999999999876444457877774 44444333444344

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=83.86  E-value=0.77  Score=37.68  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=23.8

Q ss_pred             CeEEEEecChhHHHHHHHHHh--cCCcEEEEEcC
Q 016620          166 QTVGVIGAGRIGSAYARMMVE--GFKMNLIYYDL  197 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~--~fg~~V~~~d~  197 (386)
                      .+|||=|||+||+.+.|.+..  ....+|.+.+.
T Consensus         1 ikIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd   34 (172)
T d1rm4a1           1 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVIND   34 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcC
Confidence            379999999999999997532  23367776653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=83.15  E-value=0.38  Score=40.73  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=28.5

Q ss_pred             CeEEEEecChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      ++|.|||.|..|-..|..|+ ..|.+|++++++
T Consensus         1 m~V~IIGaG~aGL~aA~~L~-~~G~~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLR-SRGTDAVLLESS   32 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHH-TTTCCEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHH-hCCCCEEEEecC
Confidence            47999999999999999985 679999999875

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.63  E-value=0.52  Score=37.18  Aligned_cols=31  Identities=29%  Similarity=0.552  Sum_probs=24.0

Q ss_pred             eEEEEe-cChhHHHHHHHHHhcCCcEEE-EEcC
Q 016620          167 TVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDL  197 (386)
Q Consensus       167 ~vgIvG-~G~IG~~iA~~L~~~fg~~V~-~~d~  197 (386)
                      +|+|+| .|+||+.+++.+.+.-++++. ++|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            699999 699999999976556678765 3443

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=82.21  E-value=0.5  Score=42.17  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             cCCCeEEEEe-cChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       163 l~g~~vgIvG-~G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .+||+|.|.| .|-||+.+++.| ...|.+|+++++...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~L-l~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCC
Confidence            4789999998 589999999998 578999999998754

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=82.10  E-value=0.93  Score=37.18  Aligned_cols=112  Identities=16%  Similarity=0.219  Sum_probs=57.2

Q ss_pred             eEEEEecChhHHHHHHHHHh---cCCcEEEEEcCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHhhhCCEEEEc
Q 016620          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~---~fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~aDiVvl~  243 (386)
                      +|||=|||+||+.+.|.+..   .-..+|.+.+.......-.+.-.|++.-   |..+.         ++-...|.+++ 
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~h---G~~~~---------~v~~~~~~l~i-   69 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAH---GKFPG---------TVSVNGSYMVV-   69 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTT---EECSS---------CEEEETTEEEE-
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccC---CCcCc---------eEEeccceEEE-
Confidence            79999999999999997632   1256777776433333333433343211   11110         11123344433 


Q ss_pred             cCCChhhhhcccHH---HHhcCCCCc-EEEEcCCCcccCHHHHHHHHHcCCcceEEe
Q 016620          244 PVLDKTTYHLINKE---RLATMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (386)
Q Consensus       244 lPlt~~t~~li~~~---~~~~mk~ga-ilIN~aRg~~vde~aL~~aL~~g~i~gaal  296 (386)
                         +.....++...   .+..-+-|. ++|. +.|.--+.+.+..-|+.| ..-..+
T Consensus        70 ---~g~~i~i~~~~~p~~i~W~~~gvDiViE-cTG~f~~~~~a~~hl~~G-akkVii  121 (173)
T d1obfo1          70 ---NGDKIRVDANRNPAQLPWGALKVDVVLE-CTGFFTTKEKAGAHIKGG-AKKVII  121 (173)
T ss_dssp             ---TTEEEEEECCSCGGGSCTTTTTCSEEEE-CSSSCCSHHHHHHHHHHT-CSEEEE
T ss_pred             ---CCEEEEEEecCCHHHCcccccccceEEE-ecccccCHHHHHHHhccC-CcceEE
Confidence               22333344333   222223344 4444 466666677777788776 344443

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=82.06  E-value=0.79  Score=37.60  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=25.8

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEcCCh
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d~~~  199 (386)
                      +|||=|||+||+.+.|.+...-..+|.+.+...
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~   35 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDLT   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCC
Confidence            699999999999999986444467877776433

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=81.87  E-value=0.6  Score=41.67  Aligned_cols=34  Identities=18%  Similarity=0.314  Sum_probs=28.1

Q ss_pred             CeEEEEecChhHHHHHHHHHh-cCCcEEEEEcCCh
Q 016620          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQ  199 (386)
Q Consensus       166 ~~vgIvG~G~IG~~iA~~L~~-~fg~~V~~~d~~~  199 (386)
                      |+|+|||.|.-|-.+|+.|++ +.+.+|.+++++.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            689999999999999987743 3456999998864

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=81.47  E-value=0.37  Score=39.64  Aligned_cols=43  Identities=21%  Similarity=0.403  Sum_probs=29.6

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEEc-CChhhHHHHHHhhh
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRLEKFVTAY  210 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~d-~~~~~~~~~~~~~~  210 (386)
                      +|||=|||+||+.+.|.+. ..+.+|.+.+ +......-.+.-.|
T Consensus         2 kIgINGfGRIGR~~~R~~~-~~~~~ivaINd~~~~~~~~~yLlky   45 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAAL-EMGAQVVAVNDPFIALEYMVYMFKY   45 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHH-HHTCCEEEEECTTSCHHHHHHHHHC
T ss_pred             eEEEECCcHHHHHHHHHHH-hCCCcEEEECCCCcCHHHHHHHHhc
Confidence            6999999999999999863 4567777664 44444333343333

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.40  E-value=0.62  Score=39.74  Aligned_cols=36  Identities=19%  Similarity=0.256  Sum_probs=30.9

Q ss_pred             CCCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChh
Q 016620          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (386)
Q Consensus       164 ~g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~  200 (386)
                      .||+|.|.|. |.||+++|+.|+ .-|++|...|+...
T Consensus         1 egK~vlITGas~GIG~a~a~~l~-~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFR-ARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            4899999988 669999999984 78999999887654

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=81.37  E-value=1.4  Score=39.33  Aligned_cols=135  Identities=18%  Similarity=0.141  Sum_probs=79.7

Q ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHcCccCCCCCCcccccccCCCeEEEEecChhHHHHHHHHHhcC---C-------cE
Q 016620          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF---K-------MN  191 (386)
Q Consensus       122 ~vAE~al~~~L~~~R~~~~~~~~~~~~~~~~w~~~~~~g~~l~g~~vgIvG~G~IG~~iA~~L~~~f---g-------~~  191 (386)
                      .+|=-+++-+|+.+|-                     .|++|...+|.|.|.|.-|-.+|+.+..++   |       -+
T Consensus         3 GTaaV~lAglinAlki---------------------~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~   61 (298)
T d1gq2a1           3 GTASVAVAGLLAALRI---------------------TKNRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKR   61 (298)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------HTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccce
Confidence            3555677777777772                     235789999999999999999999874221   1       26


Q ss_pred             EEEEcCChhhHHH-HHHhhhhhhhhhcCCCCccccccCCHHHHhhh--CCEEEEccCCChhhhhcccHHHHh---cCCCC
Q 016620          192 LIYYDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKTTYHLINKERLA---TMKKE  265 (386)
Q Consensus       192 V~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~ell~~--aDiVvl~lPlt~~t~~li~~~~~~---~mk~g  265 (386)
                      ++.+|+..--... .-...+...+.      .......+++++++.  .++++.+.-    .-++++++.++   .|.+.
T Consensus        62 i~l~D~kGlv~~~R~~l~~~k~~~a------~~~~~~~~l~~~i~~vkptvliG~s~----~~g~ft~evv~~ma~~~~~  131 (298)
T d1gq2a1          62 IWMVDSKGLIVKGRASLTPEKEHFA------HEHCEMKNLEDIVKDIKPTVLIGVAA----IGGAFTQQILQDMAAFNKR  131 (298)
T ss_dssp             EEEEETTEECBTTCSSCCTTGGGGC------BSCCCCCCHHHHHHHHCCSEEEECSC----CTTCSCHHHHHHHHHHCSS
T ss_pred             EEEEeCCCcccCCCcccCHHHHHHH------HHhhhhhhhHHHhhccChheeEeccc----ccCcCCHHHHHHHHhhCCC
Confidence            8888865321000 00000000000      001123477777764  567666643    24777887666   56689


Q ss_pred             cEEEEcCCCcc---cCHHHHHHHHH
Q 016620          266 AILVNCSRGPV---IDEVALVEHLK  287 (386)
Q Consensus       266 ailIN~aRg~~---vde~aL~~aL~  287 (386)
                      .++.=.|....   .+.++.+++-+
T Consensus       132 PIIFaLSNPt~~~E~~~~~a~~wt~  156 (298)
T d1gq2a1         132 PIIFALSNPTSKAECTAEQLYKYTE  156 (298)
T ss_dssp             CEEEECCSSGGGCSSCHHHHHHHTT
T ss_pred             CEEEEccCCCCcCCCCHHHHhhhcc
Confidence            99998887654   33444554443

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=81.05  E-value=0.73  Score=41.07  Aligned_cols=32  Identities=28%  Similarity=0.285  Sum_probs=27.0

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      ++|.|.|. |-||+.+++.|. ..|.+|+++|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~-~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLL-QNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHH-HCcCEEEEEECC
Confidence            46888865 999999999984 679999999863

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.90  E-value=0.69  Score=40.91  Aligned_cols=32  Identities=16%  Similarity=0.211  Sum_probs=27.3

Q ss_pred             CeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCC
Q 016620          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (386)
Q Consensus       166 ~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~  198 (386)
                      |+|.|.|. |-||+.+++.| ...|.+|+++|+.
T Consensus         2 KKIlVtG~sGfiG~~lv~~L-~~~g~~V~~~d~~   34 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKL-MMDGHEVTVVDNF   34 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECC
T ss_pred             CEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCC
Confidence            67889976 99999999998 4679999999864

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=80.80  E-value=1.1  Score=38.61  Aligned_cols=36  Identities=19%  Similarity=0.132  Sum_probs=28.8

Q ss_pred             CCeEEEEec-ChhHHHHHHHHHhcCCcEEEEEcCChhh
Q 016620          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (386)
Q Consensus       165 g~~vgIvG~-G~IG~~iA~~L~~~fg~~V~~~d~~~~~  201 (386)
                      ||.+.|-|. +.||+++|+.|+ .-|++|+..+++...
T Consensus         2 gKValITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   38 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLG-KEGLRVFVCARGEEG   38 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            566667766 569999999985 789999999987643

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=80.56  E-value=0.35  Score=37.54  Aligned_cols=67  Identities=16%  Similarity=0.168  Sum_probs=40.1

Q ss_pred             eEEEEecChhHHHHHHHHHhcCCcEEEEE-cCChhhHHHHHHhhhhhhhhhcCCCCccccccCCHHHHh-hhCCEEEEcc
Q 016620          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (386)
Q Consensus       167 ~vgIvG~G~IG~~iA~~L~~~fg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ell-~~aDiVvl~l  244 (386)
                      +|.|+|+|.+|+.+++.+...-++++.++ |..+...             .....+..+.....++++. ...++.++++
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~-------------G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i   71 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKV-------------GRPVRGGVIEHVDLLPQRVPGRIEIALLTV   71 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTT-------------TCEETTEEEEEGGGHHHHSTTTCCEEEECS
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhc-------------CCEECCEEEecHHHHHHHHhhcccEEEEeC
Confidence            69999999999999986534557787765 5444321             0011122233344565554 3456667777


Q ss_pred             CC
Q 016620          245 VL  246 (386)
Q Consensus       245 Pl  246 (386)
                      |.
T Consensus        72 ~~   73 (126)
T d2dt5a2          72 PR   73 (126)
T ss_dssp             CH
T ss_pred             CH
Confidence            73