Citrus Sinensis ID: 016625

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MIACLSSNLPNLHSTPTAPGQTTSEPDSKPQARKLKSSPQLNRWSRARAVRSGRKLDRLGHRSPQSSVNFKVRDRDGVDLEPERISDGEDNVEAMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHcccccEEEEEEccHHHHHHHHHHHHHcccccccccccccEEEEcccccccHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccEEcccHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEccccccccHHHHHHHHcccEEEEEcccccccccccccccccccEEEEEccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccEEEcccccHHHHHHHHHHHHHHcccccccccccccc
cEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHcccEEEEEEccHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHccccEEccHHHHHHHHHHHHccccccccccccccEccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccHHHHHHHHcccEEEEccccccccccHHHHccccccEEEEEccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHHHHHHHHHccccccccccccc
miaclssnlpnlhstptapgqttsepdskpqarklksspqlnrWSRARAVRSgrkldrlghrspqssvnfkvrdrdgvdleperisdgednveamegKSIYMVSDGTGWTAEHAVNAALGQFEHClvdrncavnthlfsgiDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACelwgipstdvlgPITEAIAShlgvspsglprgapgrnfplseeYFRRIEAIEFTIkqddgalpqnlqkadiilsgvsrtgktpLSIYLAQkgykvanvpivmgvelpkslfqvdpekvfgltinPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGrifaqnpvwpvivtGKAIEETAAVVLRLYHdrkhkcsmpriskry
miaclssnlpnlhstptapgqttsepdskpqarklksspqlnrwsraravrsgrkldrlghrspqssvnfkvrdrdgvdleperisdgednveamegKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLgvspsglprgAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIilsgvsrtgKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKArarslgfrdeirsnyseMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLyhdrkhkcsmpriskry
MIACLSSNLPNLHSTPTAPGQTTSEPDSKPQARKLKSSPQLNRWSRARAVRSGRKLDRLGHRSPQSSVNFKVRDRDGVDLEPERISDGEDNVEAMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY
**************************************************************************************************SIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGV*************FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDR*************
**************************************************************************************************SIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASH****************FPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARAR****RDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYH***************
MIACLSSNLPNLHS*************************QLNRWSRARAVRSGRKLDRLGHRSPQSSVNFKVRDRDGVDLEPERISDGEDNVEAMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY
******S***********************************************************************************NVEAMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDRKH***********
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MIACLSSNLPNLHSTPTAPGQTTSEPDSKPQARKLKSSPQLNRWSRARAVRSGRKLDRLGHRSPQSSVNFKVRDRDGVDLEPERISDGEDNVEAMEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVIVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
Q8GVP6471 Probable pyruvate, phosph yes no 0.924 0.757 0.652 1e-136
A2YM35471 Probable pyruvate, phosph N/A no 0.924 0.757 0.652 1e-136
Q195N6426 Pyruvate, phosphate dikin N/A no 0.974 0.882 0.615 1e-134
O49562403 Pyruvate, phosphate dikin yes no 0.976 0.935 0.620 1e-133
Q9MAC9377 Pyruvate, phosphate dikin no no 0.922 0.944 0.627 1e-125
B9LZ47269 Putative pyruvate, phosph yes no 0.676 0.970 0.448 2e-59
A5G9G7269 Putative pyruvate, phosph yes no 0.681 0.977 0.431 9e-57
A9G8M9281 Putative pyruvate, phosph yes no 0.715 0.982 0.422 7e-56
C6DY36270 Putative pyruvate, phosph yes no 0.683 0.977 0.402 2e-52
B5E9X5270 Putative pyruvate, phosph yes no 0.683 0.977 0.402 2e-52
>sp|Q8GVP6|PDRP1_ORYSJ Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PDRP1 PE=2 SV=2 Back     alignment and function desciption
 Score =  484 bits (1247), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 242/371 (65%), Positives = 296/371 (79%), Gaps = 14/371 (3%)

Query: 28  SKPQARKLKSSPQLNRWSRARAVRSGRKL------DRL--GHRSPQSSVNFKVRDRDGVD 79
           + P++     S QL+RWSRARA RSGR+L      DR   G  SP +         +   
Sbjct: 74  TTPRSPAQLGSSQLHRWSRARAHRSGRRLEWPTIRDRGSGGASSPPTPTRPHPSSDEAAS 133

Query: 80  LEPERISDGEDNVEAM----EGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNT 135
              +   + ED    +      KSIYMVSDGTGWTAEH+VNAALGQFEHCLVDR CAVNT
Sbjct: 134 AAAKVAVEEEDGYGVVGRDEAAKSIYMVSDGTGWTAEHSVNAALGQFEHCLVDRGCAVNT 193

Query: 136 HLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESAKKACELWGIPSTDVLGPITEA 195
           HLF+GIDD+++L+ I+KQAAK+GA+++YTLADPSMAE+ KKACELWG+PS D+L P  EA
Sbjct: 194 HLFNGIDDMDRLIEIVKQAAKEGALVLYTLADPSMAEATKKACELWGVPSNDILRPTIEA 253

Query: 196 IASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVS 255
           IASH+GV+PSG+PR +P R   L+E+YFRRIEAI+FTIKQDDGA PQNL +A I+L GVS
Sbjct: 254 IASHIGVAPSGIPRSSPSRKGQLTEDYFRRIEAIDFTIKQDDGAQPQNLNRAHIVLVGVS 313

Query: 256 RTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARAR 315
           RTGKTPLSIYLAQKGYKVANVPIVMGV LPKSLF++D +K+FGLTINP+VLQ+IRKARA+
Sbjct: 314 RTGKTPLSIYLAQKGYKVANVPIVMGVNLPKSLFEIDQDKIFGLTINPVVLQAIRKARAK 373

Query: 316 SLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHDRK 374
           +LGF  + +SNY+EM++VR EL+ A +IFAQ+P+WPVI VTGKAIEETAAVV+R++HDRK
Sbjct: 374 TLGFHGQ-KSNYAEMEHVRGELDHANQIFAQHPIWPVIEVTGKAIEETAAVVVRIFHDRK 432

Query: 375 HKCSMPRISKR 385
            KC+MPRISKR
Sbjct: 433 QKCAMPRISKR 443
Bifunctional serine/threonine kinase and phosphorylase involved in the dark/light-mediated regulation of PPDK by catalyzing its phosphorylation/dephosphorylation. Dark/light-induced changes in stromal concentrations of the competing ADP and Pi substrates govern the direction of the reaction. In the dark, phosphorylates the catalytic intermediate of PPDK (PPDK-HisP), inactivating it. Light exposure induces the phosphorolysis reaction that reactivates PPDK.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: nEC: 1
>sp|A2YM35|PDRP1_ORYSI Probable pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Oryza sativa subsp. indica GN=PDRP1 PE=3 SV=1 Back     alignment and function description
>sp|Q195N6|PDRP1_MAIZE Pyruvate, phosphate dikinase regulatory protein, chloroplastic OS=Zea mays GN=PDRP1 PE=1 SV=1 Back     alignment and function description
>sp|O49562|PDRP1_ARATH Pyruvate, phosphate dikinase regulatory protein 1, chloroplastic OS=Arabidopsis thaliana GN=RP1 PE=2 SV=1 Back     alignment and function description
>sp|Q9MAC9|PDRP2_ARATH Pyruvate, phosphate dikinase regulatory protein 2 OS=Arabidopsis thaliana GN=RP2 PE=2 SV=1 Back     alignment and function description
>sp|B9LZ47|PDRP_GEOSF Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter sp. (strain FRC-32) GN=Geob_0410 PE=3 SV=1 Back     alignment and function description
>sp|A5G9G7|PDRP_GEOUR Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter uraniireducens (strain Rf4) GN=Gura_4292 PE=3 SV=1 Back     alignment and function description
>sp|A9G8M9|PDRP_SORC5 Putative pyruvate, phosphate dikinase regulatory protein OS=Sorangium cellulosum (strain So ce56) GN=sce5851 PE=3 SV=1 Back     alignment and function description
>sp|C6DY36|PDRP_GEOSM Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter sp. (strain M21) GN=GM21_0226 PE=3 SV=1 Back     alignment and function description
>sp|B5E9X5|PDRP_GEOBB Putative pyruvate, phosphate dikinase regulatory protein OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=Gbem_0242 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
225444395424 PREDICTED: probable pyruvate, phosphate 0.989 0.900 0.75 1e-170
224076368366 predicted protein [Populus trichocarpa] 0.930 0.980 0.793 1e-168
255555003407 conserved hypothetical protein [Ricinus 0.955 0.906 0.781 1e-167
449454704403 PREDICTED: probable pyruvate, phosphate 0.937 0.898 0.749 1e-160
449488377403 PREDICTED: probable pyruvate, phosphate 0.937 0.898 0.749 1e-160
356536061382 PREDICTED: pyruvate, phosphate dikinase 0.966 0.976 0.699 1e-149
351724073382 pyruvate orthophosphate dikinase regulat 0.961 0.971 0.693 1e-149
302144062286 unnamed protein product [Vitis vinifera] 0.738 0.996 0.877 1e-148
414886958420 TPA: hypothetical protein ZEAMMB73_12061 0.984 0.904 0.626 1e-138
161598363419 pyruvate orthophosphate dikinase regulat 0.976 0.899 0.632 1e-137
>gi|225444395|ref|XP_002268248.1| PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  603 bits (1555), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/396 (75%), Positives = 330/396 (83%), Gaps = 14/396 (3%)

Query: 5   LSSNLPNLHSTPTAPGQTTSEPDSKPQAR-----------KLKSSPQLNRWSRARAVRSG 53
            SS+ P   ST   P    + P S P ++           K K SPQLNRWSRARA+RSG
Sbjct: 29  FSSHRPTAASTTNYPKPNPTNPISLPNSQANRAPSDSDPPKFKGSPQLNRWSRARAIRSG 88

Query: 54  RKLDRLGHRSPQSSVNFKVRDRDGVDLEPERISD--GEDNVEAMEGKSIYMVSDGTGWTA 111
           RKL+R G RS    +N +V+ ++ V   P   S   G D+ E   GKSIYMVSDGTGWT 
Sbjct: 89  RKLERQGQRSQVVEMNSRVQPKESVSSPPTSASGAPGNDDGEVRTGKSIYMVSDGTGWTV 148

Query: 112 EHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMA 171
           EHAVNAALGQFEHCLVDR C VNTHLFSGIDD E L+ I+KQAAK+GAMLVYTLADPSMA
Sbjct: 149 EHAVNAALGQFEHCLVDRGCPVNTHLFSGIDDAEPLVEIVKQAAKEGAMLVYTLADPSMA 208

Query: 172 ESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEF 231
           ESA++AC+LWGIPSTDVLGPITEA+ASHLGVSPSGLPRGAPGR FPLSEEYF+RIEAIEF
Sbjct: 209 ESARQACKLWGIPSTDVLGPITEAVASHLGVSPSGLPRGAPGRKFPLSEEYFKRIEAIEF 268

Query: 232 TIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQV 291
           TIKQDDGALPQNL KA+I+L+GVSRTGKTPLSIYLAQKGYKVANVPIV+GVELP +LF+V
Sbjct: 269 TIKQDDGALPQNLHKAEIVLAGVSRTGKTPLSIYLAQKGYKVANVPIVIGVELPNTLFEV 328

Query: 292 DPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWP 351
           +PEKVFGLTINP+VL +IRKARA+SLGF +EIRSNYSEMD+VR ELEFAG+IFAQNP WP
Sbjct: 329 EPEKVFGLTINPVVLHTIRKARAKSLGFCEEIRSNYSEMDHVRAELEFAGKIFAQNPAWP 388

Query: 352 VI-VTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY 386
           VI VTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY
Sbjct: 389 VIEVTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY 424

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224076368|ref|XP_002304932.1| predicted protein [Populus trichocarpa] gi|222847896|gb|EEE85443.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255555003|ref|XP_002518539.1| conserved hypothetical protein [Ricinus communis] gi|223542384|gb|EEF43926.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449454704|ref|XP_004145094.1| PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic-like [Cucumis sativus] gi|449471956|ref|XP_004153453.1| PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449488377|ref|XP_004158018.1| PREDICTED: probable pyruvate, phosphate dikinase regulatory protein, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356536061|ref|XP_003536559.1| PREDICTED: pyruvate, phosphate dikinase regulatory protein 1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|351724073|ref|NP_001236533.1| pyruvate orthophosphate dikinase regulatory protein [Glycine max] gi|161598361|gb|ABX74942.1| pyruvate orthophosphate dikinase regulatory protein [Glycine max] Back     alignment and taxonomy information
>gi|302144062|emb|CBI23167.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|414886958|tpg|DAA62972.1| TPA: hypothetical protein ZEAMMB73_120613 [Zea mays] Back     alignment and taxonomy information
>gi|161598363|gb|ABX74943.1| pyruvate orthophosphate dikinase regulatory protein [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
TAIR|locus:2127413403 RP1 "AT4G21210" [Arabidopsis t 0.976 0.935 0.623 2.5e-120
TAIR|locus:2102077377 RP2 "PPDK regulatory protein 2 0.963 0.986 0.623 3.5e-114
UNIPROTKB|Q74G02269 GSU0450 "Putative pyruvate, ph 0.670 0.962 0.404 5.2e-49
TIGR_CMR|GSU_0450269 GSU_0450 "conserved hypothetic 0.670 0.962 0.404 5.2e-49
UNIPROTKB|Q3AEY1277 CHY_0442 "Putative pyruvate, p 0.670 0.935 0.383 2.8e-43
TIGR_CMR|CHY_0442277 CHY_0442 "conserved hypothetic 0.670 0.935 0.383 2.8e-43
UNIPROTKB|Q81LU1270 BAS4196 "Putative pyruvate, ph 0.691 0.988 0.384 2.5e-42
TIGR_CMR|BA_4520270 BA_4520 "conserved hypothetica 0.691 0.988 0.384 2.5e-42
UNIPROTKB|Q71YF0270 LMOf2365_1895 "Putative pyruva 0.673 0.962 0.398 2.2e-41
UNIPROTKB|Q71ZL3274 LMOf2365_1476 "Putative pyruva 0.676 0.952 0.351 2.9e-39
TAIR|locus:2127413 RP1 "AT4G21210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1184 (421.8 bits), Expect = 2.5e-120, P = 2.5e-120
 Identities = 245/393 (62%), Positives = 296/393 (75%)

Query:     5 LSSNLPNLHSTPTAPGQTT---SEPDSKPQARKLKSSPQLNRWSRARAVRSGRKLDRL-- 59
             +SSNL N +S P      +   SEP S+ + RK  S  QLNRW+RAR +RSG KLD    
Sbjct:    16 ISSNL-NPNSKPAGSDSVSLNASEPGSERKPRKFSS--QLNRWNRARTLRSGAKLDSTIT 72

Query:    60 -GHRS---PQSSVNFKVR-DRDGVDLEPERISDGEDNVEAMEGKSIYMVSDGTGWTAEHA 114
              G  +   P   +    R D   +D +    S+G    +    KSIY+VSDGTGWTAEHA
Sbjct:    73 NGSNNTTGPMRPIESSSRTDVSTLDSDVSSSSNGVSEADMTAAKSIYIVSDGTGWTAEHA 132

Query:   115 VNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA 174
             VNAALGQF++CLVDR C VNTHLFSGI+D E+LM IIKQAA++GAM++YTLADPSMAE+ 
Sbjct:   133 VNAALGQFDYCLVDRGCPVNTHLFSGIEDGEKLMEIIKQAAREGAMVIYTLADPSMAEAT 192

Query:   175 KKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIK 234
              +AC+LW IPS D+LGPITE+I+SHLG +PSGL RG    N  L+E+YF+RIEAIEFTIK
Sbjct:   193 MRACKLWKIPSLDILGPITESISSHLGTNPSGLSRGIT--NSSLNEDYFKRIEAIEFTIK 250

Query:   235 QDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPE 294
              DDGALP+NL+KADI+L GVSRTGKTPLS YLAQKGYKV+NVPIV GV+LPK+LF++DP 
Sbjct:   251 HDDGALPENLEKADIVLVGVSRTGKTPLSTYLAQKGYKVSNVPIVNGVDLPKTLFEIDPR 310

Query:   295 KVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI- 353
             KVFGL INPLVLQ IR+ARA+SLG     ++ YSE+  V+EELE A +IFA+NP WPVI 
Sbjct:   311 KVFGLMINPLVLQGIREARAKSLGLGSSFKTKYSELGSVKEELELAKKIFAENPTWPVIE 370

Query:   354 VTGKAIEETAAVVLRLYHDRKHKCSMPRISKRY 386
             VT  AIEETAAVVLRLY +R+   +MPRISK Y
Sbjct:   371 VTESAIEETAAVVLRLYDERQSNRAMPRISKSY 403
GO:0004672 "protein kinase activity" evidence=IDA;NAS
GO:0004674 "protein serine/threonine kinase activity" evidence=IEA
GO:0004721 "phosphoprotein phosphatase activity" evidence=IDA;NAS
GO:0005524 "ATP binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IEA;IDA
GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA
GO:0016776 "phosphotransferase activity, phosphate group as acceptor" evidence=IEA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0010103 "stomatal complex morphogenesis" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019761 "glucosinolate biosynthetic process" evidence=RCA
TAIR|locus:2102077 RP2 "PPDK regulatory protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q74G02 GSU0450 "Putative pyruvate, phosphate dikinase regulatory protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0450 GSU_0450 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AEY1 CHY_0442 "Putative pyruvate, phosphate dikinase regulatory protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0442 CHY_0442 "conserved hypothetical protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q81LU1 BAS4196 "Putative pyruvate, phosphate dikinase regulatory protein" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4520 BA_4520 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q71YF0 LMOf2365_1895 "Putative pyruvate, phosphate dikinase regulatory protein 2" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q71ZL3 LMOf2365_1476 "Putative pyruvate, phosphate dikinase regulatory protein 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8GVP6PDRP1_ORYSJ2, ., 7, ., 4, ., n, 10.65220.92480.7579yesno
O49562PDRP1_ARATH2, ., 7, ., 4, ., n, 10.62080.97660.9354yesno
Q195N6PDRP1_MAIZE2, ., 7, ., 4, ., n, 10.61530.97400.8826N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.4LOW CONFIDENCE prediction!
4th Layer2.7.11.n10.991
4th Layer2.7.4.n10.991
3rd Layer2.7.110.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
pfam03618255 pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase 1e-123
PRK05339269 PRK05339, PRK05339, PEP synthetase regulatory prot 1e-112
COG1806273 COG1806, COG1806, Uncharacterized protein conserve 2e-87
>gnl|CDD|217642 pfam03618, Kinase-PPPase, Kinase/pyrophosphorylase Back     alignment and domain information 
 Score =  355 bits (914), Expect = e-123
 Identities = 127/269 (47%), Positives = 166/269 (61%), Gaps = 15/269 (5%)

Query: 100 IYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGA 159
           I++VSD TG TAE    AAL QF             H F  I   E+L  ++++  ++  
Sbjct: 1   IFLVSDSTGETAETVGRAALSQFP------GVEFEIHRFPFIRTEEKLEEVLEEINEEDG 54

Query: 160 MLVYTLADPSMAESAKKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLS 219
           ++ YTL DP + E  ++  E  GIP  D+LGP+ E + S LG+ PS      PGR   L 
Sbjct: 55  IVFYTLVDPELREILEEFAEALGIPCVDLLGPLLEPLESELGIKPSP----EPGRQHGLD 110

Query: 220 EEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGVSRTGKTPLSIYLAQKGYKVANVPIV 279
           E+YF+RIEAIEF +  DDG  P+ L +ADIIL GVSRT KTP S+YLA KG KVAN P+V
Sbjct: 111 EDYFKRIEAIEFALAHDDGQDPRGLDEADIILVGVSRTSKTPTSLYLANKGIKVANYPLV 170

Query: 280 MGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEF 339
             V LP+ LF+VD +KVFGLTI+P  L  IR+ R  SLG  +   S Y+ ++  REEL +
Sbjct: 171 PEVPLPEELFEVDRKKVFGLTIDPERLHEIRRERLPSLGLDE---SRYASLEQCREELAY 227

Query: 340 AGRIFAQNPVWPVI-VTGKAIEETAAVVL 367
           A R+F +    PVI VT K+IEETAA +L
Sbjct: 228 AERLFRRLG-IPVIDVTNKSIEETAATIL 255

This family of regulatory proteins has ADP-dependent kinase and inorganic phosphate-dependent pyrophosphorylase activity. Length = 255
>gnl|CDD|235419 PRK05339, PRK05339, PEP synthetase regulatory protein; Provisional Back     alignment and domain information
>gnl|CDD|224719 COG1806, COG1806, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
PRK05339269 PEP synthetase regulatory protein; Provisional 100.0
PF03618255 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: 100.0
COG1806273 Uncharacterized protein conserved in bacteria [Fun 100.0
PRK13947171 shikimate kinase; Provisional 97.6
PRK04040188 adenylate kinase; Provisional 97.21
PRK04220301 2-phosphoglycerate kinase; Provisional 97.02
PRK03839180 putative kinase; Provisional 96.91
PRK14738206 gmk guanylate kinase; Provisional 96.84
PRK03731171 aroL shikimate kinase II; Reviewed 96.47
PRK05416 288 glmZ(sRNA)-inactivating NTPase; Provisional 96.41
PRK05057172 aroK shikimate kinase I; Reviewed 96.39
PRK13808 333 adenylate kinase; Provisional 96.33
COG1936180 Predicted nucleotide kinase (related to CMP and AM 96.27
PF00625183 Guanylate_kin: Guanylate kinase; InterPro: IPR0081 96.01
PRK13477512 bifunctional pantoate ligase/cytidylate kinase; Pr 95.88
PRK04182180 cytidylate kinase; Provisional 95.86
TIGR02173171 cyt_kin_arch cytidylate kinase, putative. Proteins 95.44
PRK00131175 aroK shikimate kinase; Reviewed 95.42
PRK14532188 adenylate kinase; Provisional 95.2
TIGR01360188 aden_kin_iso1 adenylate kinase, isozyme 1 subfamil 95.04
PRK13949169 shikimate kinase; Provisional 94.91
PRK13946184 shikimate kinase; Provisional 94.9
PRK02496184 adk adenylate kinase; Provisional 94.68
TIGR00682 311 lpxK tetraacyldisaccharide 4'-kinase. Also called 94.46
PRK12339197 2-phosphoglycerate kinase; Provisional 94.4
smart00072184 GuKc Guanylate kinase homologues. Active enzymes c 94.36
TIGR01359183 UMP_CMP_kin_fam UMP-CMP kinase family. This subfam 94.31
PRK00652 325 lpxK tetraacyldisaccharide 4'-kinase; Reviewed 94.15
PF13207121 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 94.01
PRK08154309 anaerobic benzoate catabolism transcriptional regu 94.0
PLN02200234 adenylate kinase family protein 93.98
TIGR03263180 guanyl_kin guanylate kinase. Members of this famil 93.77
TIGR02322179 phosphon_PhnN phosphonate metabolism protein/1,5-b 93.67
PRK06762166 hypothetical protein; Provisional 93.5
cd01672200 TMPK Thymidine monophosphate kinase (TMPK), also k 93.43
PRK00300205 gmk guanylate kinase; Provisional 93.33
PRK01906 338 tetraacyldisaccharide 4'-kinase; Provisional 92.95
PLN02199303 shikimate kinase 92.85
PRK06526254 transposase; Provisional 92.81
PF02606 326 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPr 92.78
PRK13948182 shikimate kinase; Provisional 92.75
TIGR02729329 Obg_CgtA Obg family GTPase CgtA. This model descri 92.32
PRK00625173 shikimate kinase; Provisional 92.27
COG1663 336 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell env 92.23
PRK08233182 hypothetical protein; Provisional 92.23
PRK08356195 hypothetical protein; Provisional 91.93
PRK12297 424 obgE GTPase CgtA; Reviewed 91.57
COG1219 408 ClpX ATP-dependent protease Clp, ATPase subunit [P 91.44
PRK14528186 adenylate kinase; Provisional 91.0
PRK14530215 adenylate kinase; Provisional 90.93
PRK14737186 gmk guanylate kinase; Provisional 90.83
PRK11860661 bifunctional 3-phosphoshikimate 1-carboxyvinyltran 89.45
COG0703172 AroK Shikimate kinase [Amino acid transport and me 89.44
PF03808172 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp 89.17
PRK12296 500 obgE GTPase CgtA; Reviewed 88.95
cd0198399 Fer4_NifH The Fer4_NifH superfamily contains a var 88.78
PF00899135 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a 88.45
COG2019189 AdkA Archaeal adenylate kinase [Nucleotide transpo 88.43
PF03668 284 ATP_bind_2: P-loop ATPase protein family; InterPro 88.4
PRK14527191 adenylate kinase; Provisional 88.04
cd04122166 Rab14 Rab14 subfamily. Rab14 GTPases are localized 87.9
TIGR00017217 cmk cytidylate kinase. This family consists of cyt 87.75
KOG0745 564 consensus Putative ATP-dependent Clp-type protease 87.74
PF00004132 AAA: ATPase family associated with various cellula 87.58
PRK00091 307 miaA tRNA delta(2)-isopentenylpyrophosphate transf 86.64
cd04119168 RJL RJL (RabJ-Like) subfamily. RJLs are found in m 86.52
COG1100219 GTPase SAR1 and related small G proteins [General 86.47
PRK12337475 2-phosphoglycerate kinase; Provisional 86.44
PLN02748 468 tRNA dimethylallyltransferase 86.32
PLN02796 347 D-glycerate 3-kinase 86.14
TIGR01526325 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr 86.06
PRK13975196 thymidylate kinase; Provisional 86.04
cd04112191 Rab26 Rab26 subfamily. First identified in rat pan 85.36
COG0190283 FolD 5,10-methylene-tetrahydrofolate dehydrogenase 85.32
PRK12299335 obgE GTPase CgtA; Reviewed 85.19
PRK14021 542 bifunctional shikimate kinase/3-dehydroquinate syn 85.05
TIGR00176155 mobB molybdopterin-guanine dinucleotide biosynthes 84.95
TIGR01313163 therm_gnt_kin carbohydrate kinase, thermoresistant 84.92
cd00464154 SK Shikimate kinase (SK) is the fifth enzyme in th 84.51
COG3598 402 RepA RecA-family ATPase [DNA replication, recombin 84.49
cd04159159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was id 83.75
PF13521163 AAA_28: AAA domain; PDB: 1LW7_A. 83.65
PRK06217183 hypothetical protein; Validated 83.39
PF13238129 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB 83.11
cd01428194 ADK Adenylate kinase (ADK) catalyzes the reversibl 82.86
PRK13951 488 bifunctional shikimate kinase/3-dehydroquinate syn 82.75
cd01821198 Rhamnogalacturan_acetylesterase_like Rhamnogalactu 82.74
PRK07261171 topology modulation protein; Provisional 82.56
PLN02165 334 adenylate isopentenyltransferase 82.46
cd00757228 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 82.36
TIGR00174 287 miaA tRNA isopentenyltransferase (miaA). Catalyzes 82.07
TIGR01351210 adk adenylate kinases. Adenylate kinase (EC 2.7.4. 82.01
cd03283199 ABC_MutS-like MutS-like homolog in eukaryotes. The 81.86
PF07728139 AAA_5: AAA domain (dynein-related subfamily); Inte 81.67
cd04156160 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su 81.46
cd02027149 APSK Adenosine 5'-phosphosulfate kinase (APSK) cat 81.23
PF03205140 MobB: Molybdopterin guanine dinucleotide synthesis 80.99
cd00227175 CPT Chloramphenicol (Cm) phosphotransferase (CPT). 80.73
cd01483143 E1_enzyme_family Superfamily of activating enzymes 80.52
cd02020147 CMPK Cytidine monophosphate kinase (CMPK) catalyze 80.5
PRK09518 712 bifunctional cytidylate kinase/GTPase Der; Reviewe 80.34
TIGR01663526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 80.29
cd00009151 AAA The AAA+ (ATPases Associated with a wide varie 80.01
>PRK05339 PEP synthetase regulatory protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.9e-105  Score=768.28  Aligned_cols=264  Identities=45%  Similarity=0.752  Sum_probs=256.6

Q ss_pred             cCccEEEEEeCChHHHHHHHHHHHHccCCCCccCCccceeEEeccccCCHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Q 016625           95 MEGKSIYMVSDGTGWTAEHAVNAALGQFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGAMLVYTLADPSMAESA  174 (386)
Q Consensus        95 ~~~~~IfiVSDsTGeTAe~v~~AaLaQF~~~~~d~~~~~~~~~~p~V~t~e~l~~il~~a~~~~~iV~~Tlvd~elr~~l  174 (386)
                      ++.++||+||||||+|||+++||+|+||+++      ++++++||||+|.+++.+++++|+++++||||||||++||++|
T Consensus         2 ~~~~~i~~VSDstGeTAe~v~~A~l~QF~~~------~~~~~~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv~~elr~~l   75 (269)
T PRK05339          2 MMKRHVFLVSDSTGETAETVGRAALSQFPNV------EFEEHRYPFVRTEEKADEVLEEINAERPIVFYTLVDPELREIL   75 (269)
T ss_pred             CCceEEEEEeCCHHHHHHHHHHHHHHhCCCC------CeeEEEeCCcCCHHHHHHHHHHHHhcCCEEEEeCCCHHHHHHH
Confidence            5678999999999999999999999999974      6889999999999999999999988899999999999999999


Q ss_pred             HHHHHHcCCCEeecchHHHHHHHHHhCCCCCCCCCCCCCCCCCCcHHHHhhhhhhhhhhhCCCCCCCCCCCcCcEEEEcc
Q 016625          175 KKACELWGIPSTDVLGPITEAIASHLGVSPSGLPRGAPGRNFPLSEEYFRRIEAIEFTIKQDDGALPQNLQKADIILSGV  254 (386)
Q Consensus       175 ~~~~~~~~i~~vDll~p~i~~le~~lG~~p~~~~~~~pG~~~~ld~~YF~RIeAIEFAlkhDDG~~p~~L~~ADIVLvGV  254 (386)
                      +++|+.+||+++|+|+|+++.|+++||++|.+    .||+.|++|++||+|||||||||+||||++|++|.+||||||||
T Consensus        76 ~~~~~~~~i~~vdll~p~i~~le~~lg~~p~~----~pG~~~~ld~~Yf~RIeAiefal~hDDG~~~~~l~~ADIiLvGV  151 (269)
T PRK05339         76 EERCAEFGIPCIDILGPLIAPLEQELGLKPTP----EPGRTHGLDEEYFKRIEAIEFALAHDDGQDPRGLDEADVILVGV  151 (269)
T ss_pred             HHHHHHcCCCEEeccHHHHHHHHHHHCcCCCC----CCCcccCCcHHHHHHHHHHHHHHHcCCCCCcCCcccCCEEEECc
Confidence            99999999999999999999999999999986    89999999999999999999999999999999999999999999


Q ss_pred             CCCCCChhhHHhhhcCceeeeccccCCCCCCccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHH
Q 016625          255 SRTGKTPLSIYLAQKGYKVANVPIVMGVELPKSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVR  334 (386)
Q Consensus       255 SRTsKTPlSiYLA~~G~KVAN~PLVp~v~lP~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~  334 (386)
                      |||||||||||||++|||||||||||+++||++||+++++|||||||||++|++||++|+++||+     |.|||+++|+
T Consensus       152 SRtsKTPlS~YLA~~G~KvAN~PLvpe~~lP~~L~~~~~~kivGLtIdp~rL~~IR~~Rl~~lg~-----s~Ya~~~~i~  226 (269)
T PRK05339        152 SRTSKTPTSLYLANKGIKAANYPLVPEVPLPEELFPIDPKKIFGLTIDPERLIEIRKERLPNLGL-----SRYASLEQCR  226 (269)
T ss_pred             CCCCCcHHHHHHHccCCceEeeCCCCCCCCCHHHHhCCCCcEEEEeCCHHHHHHHHHHHhcccCc-----CcCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999985     6899999999


Q ss_pred             HHHHHHHHHHhhCCCCcEE-ccCccHHHHHHHHHHHHhccc
Q 016625          335 EELEFAGRIFAQNPVWPVI-VTGKAIEETAAVVLRLYHDRK  374 (386)
Q Consensus       335 ~EL~~A~~lf~k~~~~pvI-VT~kSIEEtAa~Il~~~~~r~  374 (386)
                      +||+||++||+++ ||||| ||+|||||||+.|+++++.+.
T Consensus       227 ~El~~A~~l~~k~-~~pvIdvT~kSIEEtA~~Il~~~~~~~  266 (269)
T PRK05339        227 EELAEAERLFRRE-GIPVIDVTNKSIEETAAKILEILGLRR  266 (269)
T ss_pred             HHHHHHHHHHHHc-CCCEEECCCCcHHHHHHHHHHHHHhhc
Confidence            9999999999998 99999 999999999999999997654

>PF03618 Kinase-PPPase: Kinase/pyrophosphorylase; InterPro: IPR005177 This entry represents a family of uncharacterised proteins which are predicted to function as phosphotransferases Back     alignment and domain information
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK13947 shikimate kinase; Provisional Back     alignment and domain information
>PRK04040 adenylate kinase; Provisional Back     alignment and domain information
>PRK04220 2-phosphoglycerate kinase; Provisional Back     alignment and domain information
>PRK03839 putative kinase; Provisional Back     alignment and domain information
>PRK14738 gmk guanylate kinase; Provisional Back     alignment and domain information
>PRK03731 aroL shikimate kinase II; Reviewed Back     alignment and domain information
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional Back     alignment and domain information
>PRK05057 aroK shikimate kinase I; Reviewed Back     alignment and domain information
>PRK13808 adenylate kinase; Provisional Back     alignment and domain information
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] Back     alignment and domain information
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 Back     alignment and domain information
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional Back     alignment and domain information
>PRK04182 cytidylate kinase; Provisional Back     alignment and domain information
>TIGR02173 cyt_kin_arch cytidylate kinase, putative Back     alignment and domain information
>PRK00131 aroK shikimate kinase; Reviewed Back     alignment and domain information
>PRK14532 adenylate kinase; Provisional Back     alignment and domain information
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily Back     alignment and domain information
>PRK13949 shikimate kinase; Provisional Back     alignment and domain information
>PRK13946 shikimate kinase; Provisional Back     alignment and domain information
>PRK02496 adk adenylate kinase; Provisional Back     alignment and domain information
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase Back     alignment and domain information
>PRK12339 2-phosphoglycerate kinase; Provisional Back     alignment and domain information
>smart00072 GuKc Guanylate kinase homologues Back     alignment and domain information
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family Back     alignment and domain information
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed Back     alignment and domain information
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A Back     alignment and domain information
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed Back     alignment and domain information
>PLN02200 adenylate kinase family protein Back     alignment and domain information
>TIGR03263 guanyl_kin guanylate kinase Back     alignment and domain information
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN Back     alignment and domain information
>PRK06762 hypothetical protein; Provisional Back     alignment and domain information
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor Back     alignment and domain information
>PRK00300 gmk guanylate kinase; Provisional Back     alignment and domain information
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional Back     alignment and domain information
>PLN02199 shikimate kinase Back     alignment and domain information
>PRK06526 transposase; Provisional Back     alignment and domain information
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability [] Back     alignment and domain information
>PRK13948 shikimate kinase; Provisional Back     alignment and domain information
>TIGR02729 Obg_CgtA Obg family GTPase CgtA Back     alignment and domain information
>PRK00625 shikimate kinase; Provisional Back     alignment and domain information
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK08233 hypothetical protein; Provisional Back     alignment and domain information
>PRK08356 hypothetical protein; Provisional Back     alignment and domain information
>PRK12297 obgE GTPase CgtA; Reviewed Back     alignment and domain information
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14528 adenylate kinase; Provisional Back     alignment and domain information
>PRK14530 adenylate kinase; Provisional Back     alignment and domain information
>PRK14737 gmk guanylate kinase; Provisional Back     alignment and domain information
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional Back     alignment and domain information
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli Back     alignment and domain information
>PRK12296 obgE GTPase CgtA; Reviewed Back     alignment and domain information
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain Back     alignment and domain information
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP Back     alignment and domain information
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins Back     alignment and domain information
>PRK14527 adenylate kinase; Provisional Back     alignment and domain information
>cd04122 Rab14 Rab14 subfamily Back     alignment and domain information
>TIGR00017 cmk cytidylate kinase Back     alignment and domain information
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport Back     alignment and domain information
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed Back     alignment and domain information
>cd04119 RJL RJL (RabJ-Like) subfamily Back     alignment and domain information
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only] Back     alignment and domain information
>PRK12337 2-phosphoglycerate kinase; Provisional Back     alignment and domain information
>PLN02748 tRNA dimethylallyltransferase Back     alignment and domain information
>PLN02796 D-glycerate 3-kinase Back     alignment and domain information
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type Back     alignment and domain information
>PRK13975 thymidylate kinase; Provisional Back     alignment and domain information
>cd04112 Rab26 Rab26 subfamily Back     alignment and domain information
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] Back     alignment and domain information
>PRK12299 obgE GTPase CgtA; Reviewed Back     alignment and domain information
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB Back     alignment and domain information
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family Back     alignment and domain information
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants Back     alignment and domain information
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd04159 Arl10_like Arl10-like subfamily Back     alignment and domain information
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A Back     alignment and domain information
>PRK06217 hypothetical protein; Validated Back     alignment and domain information
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C Back     alignment and domain information
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) Back     alignment and domain information
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional Back     alignment and domain information
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases Back     alignment and domain information
>PRK07261 topology modulation protein; Provisional Back     alignment and domain information
>PLN02165 adenylate isopentenyltransferase Back     alignment and domain information
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA Back     alignment and domain information
>TIGR00174 miaA tRNA isopentenyltransferase (miaA) Back     alignment and domain information
>TIGR01351 adk adenylate kinases Back     alignment and domain information
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes Back     alignment and domain information
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] Back     alignment and domain information
>cd04156 ARLTS1 ARLTS1 subfamily Back     alignment and domain information
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS) Back     alignment and domain information
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A Back     alignment and domain information
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) Back     alignment and domain information
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins Back     alignment and domain information
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor Back     alignment and domain information
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 40/325 (12%), Positives = 93/325 (28%), Gaps = 99/325 (30%)

Query: 121 QFEHCLVDRNCAVNTHLFSGIDDVEQLMVIIKQAAKDGA--MLVYTLADPSMAE--SAKK 176
            +E+CL+             + +V+         A + +  +L+ T     + +  SA  
Sbjct: 242 PYENCLLV------------LLNVQNAKAW---NAFNLSCKILLTT-RFKQVTDFLSAAT 285

Query: 177 ACELWGIPSTDVLGPITEA-----IASHLGVSPSGLPR-------------GAPGRNFPL 218
                 I        +T       +  +L   P  LPR                 R+   
Sbjct: 286 TTH---ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 219 SEEYFRRI------EAIEFTIKQDDGALPQNLQKA----DIILSGVSRTGKTPLSIYLAQ 268
           + + ++ +        IE ++   +   P   +K      +            LS+    
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTIL-LSLIWFD 398

Query: 269 KGYKVANVPIVMGVEL-PKSLFQVDPEKVFGLTINPLVLQSIRKARA-----RSL----- 317
                 +  +V+  +L   SL +  P++   ++I  + L+   K        RS+     
Sbjct: 399 VIK---SDVMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKVKLENEYALHRSIVDHYN 454

Query: 318 --------GFRDEIRSNY---------SEMDYVREELEFAGRIFAQNPVW---PVIVTGK 357
                            Y           +++      F   +F  +  +    +     
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVF-LDFRFLEQKIRHDST 512

Query: 358 AIEETAAVV-----LRLYHDRKHKC 377
           A   + +++     L+ Y  + + C
Sbjct: 513 AWNASGSILNTLQQLKFY--KPYIC 535
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
3kb2_A173 SPBC2 prophage-derived uncharacterized protein YOR 97.33
3trf_A185 Shikimate kinase, SK; amino acid biosynthesis, tra 96.7
3t61_A202 Gluconokinase; PSI-biology, structural genomics, p 96.58
4e22_A252 Cytidylate kinase; P-loop, CMP/ATP binding, transf 96.49
3ake_A208 Cytidylate kinase; CMP kinase, CMP complex, open c 96.44
2h92_A219 Cytidylate kinase; rossmann fold, transferase; HET 96.31
2z0h_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 96.31
3lw7_A179 Adenylate kinase related protein (ADKA-like); AMP, 96.26
1via_A175 Shikimate kinase; structural genomics, transferase 96.23
3vaa_A199 Shikimate kinase, SK; structural genomics, center 96.11
1tev_A196 UMP-CMP kinase; ploop, NMP binding region, LID reg 96.0
3iij_A180 Coilin-interacting nuclear ATPase protein; alpha a 95.91
1kht_A192 Adenylate kinase; phosphotransferase, signaling pr 95.84
2c95_A196 Adenylate kinase 1; transferase, AP4A, nucleotide 95.67
2cdn_A201 Adenylate kinase; phosphoryl transfer, associative 95.32
2jaq_A205 Deoxyguanosine kinase; transferase, deoxyribonucle 95.29
1q3t_A236 Cytidylate kinase; nucleotide monophosphate kinase 95.24
1kag_A173 SKI, shikimate kinase I; transferase, structural g 95.22
4eun_A200 Thermoresistant glucokinase; putative sugar kinase 95.1
3tr0_A205 Guanylate kinase, GMP kinase; purines, pyrimidines 94.92
1knq_A175 Gluconate kinase; ALFA/beta structure, transferase 94.92
3dl0_A216 Adenylate kinase; phosphotransferase, zinc coordin 94.81
1qf9_A194 UMP/CMP kinase, protein (uridylmonophosphate/cytid 94.8
3nwj_A250 ATSK2; P loop, shikimate, nucleoside monophosphate 94.79
1cke_A227 CK, MSSA, protein (cytidine monophosphate kinase); 94.79
3tlx_A243 Adenylate kinase 2; structural genomics, structura 94.72
1y63_A184 LMAJ004144AAA protein; structural genomics, protei 94.71
3fb4_A216 Adenylate kinase; psychrophIle, phosphotransferase 94.51
1zuh_A168 Shikimate kinase; alpha-beta protein, transferase; 94.51
2if2_A204 Dephospho-COA kinase; alpha-beta protein, structur 94.41
1vht_A218 Dephospho-COA kinase; structural genomics, transfe 94.29
1ukz_A203 Uridylate kinase; transferase; HET: ADP AMP; 1.90A 94.27
3be4_A217 Adenylate kinase; malaria, cryptosporidium parvum 94.0
1nks_A194 Adenylate kinase; thermophilic, transferase; HET: 93.96
1ak2_A233 Adenylate kinase isoenzyme-2; nucleoside monophosp 93.95
3cm0_A186 Adenylate kinase; ATP-binding, cytoplasm, nucleoti 93.75
2iyv_A184 Shikimate kinase, SK; transferase, aromatic amino 93.73
2bwj_A199 Adenylate kinase 5; phosphoryl transfer reaction, 93.62
2f6r_A281 COA synthase, bifunctional coenzyme A synthase; 18 93.54
1jjv_A206 Dephospho-COA kinase; P-loop nucleotide-binding fo 93.35
3uie_A200 Adenylyl-sulfate kinase 1, chloroplastic; rossmann 93.25
2qor_A204 Guanylate kinase; phosphotransferase, purine metab 92.59
2qt1_A207 Nicotinamide riboside kinase 1; non-protein kinase 92.58
1nn5_A215 Similar to deoxythymidylate kinase (thymidylate K; 92.26
4ehx_A 315 Tetraacyldisaccharide 4'-kinase; membrane protein, 92.23
3r20_A233 Cytidylate kinase; structural genomics, seattle st 92.02
3tau_A208 Guanylate kinase, GMP kinase; structural genomics, 91.78
4eaq_A229 DTMP kinase, thymidylate kinase; structural genomi 91.25
3a00_A186 Guanylate kinase, GMP kinase; domain movement, dim 90.73
3ney_A197 55 kDa erythrocyte membrane protein; structural ge 90.26
3zvl_A416 Bifunctional polynucleotide phosphatase/kinase; hy 88.54
1ex7_A186 Guanylate kinase; substrate-induced FIT, domain mo 88.03
3lnc_A231 Guanylate kinase, GMP kinase; ALS collaborative cr 87.57
2qmh_A205 HPR kinase/phosphorylase; V267F mutation, ATP-bind 86.85
3a8t_A 339 Adenylate isopentenyltransferase; rossmann fold pr 86.79
1uf9_A203 TT1252 protein; P-loop, nucleotide binding domain, 85.46
3foz_A 316 TRNA delta(2)-isopentenylpyrophosphate transferas; 85.37
3eph_A 409 TRNA isopentenyltransferase; transferase, alternat 85.0
2v54_A204 DTMP kinase, thymidylate kinase; nucleotide biosyn 84.14
3crm_A 323 TRNA delta(2)-isopentenylpyrophosphate transferase 84.11
1xjc_A169 MOBB protein homolog; structural genomics, midwest 83.13
1lnz_A342 SPO0B-associated GTP-binding protein; GTPase, OBG, 82.42
1e6c_A173 Shikimate kinase; phosphoryl transfer, ADP, shikim 81.81
2ze6_A 253 Isopentenyl transferase; crown GALL tumor, cytokin 81.74
2rhm_A193 Putative kinase; P-loop containing nucleoside trip 81.68
2vli_A183 Antibiotic resistance protein; transferase, tunica 80.91
1qhx_A178 CPT, protein (chloramphenicol phosphotransferase); 80.89
2pt5_A168 Shikimate kinase, SK; aromatic amino acid biosynth 80.81
1ly1_A181 Polynucleotide kinase; PNK, phosphatase, transfera 80.64
3hjn_A197 DTMP kinase, thymidylate kinase; ATP-binding, nucl 80.33
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* Back     alignment and structure
Probab=97.33  E-value=0.0014  Score=54.50  Aligned_cols=114  Identities=20%  Similarity=0.188  Sum_probs=68.5

Q ss_pred             EEEEccCCCCCChhhHHhhh-cCceeeeccccCC-CC-----------CCc---cc----------cc------------
Q 016625          249 IILSGVSRTGKTPLSIYLAQ-KGYKVANVPIVMG-VE-----------LPK---SL----------FQ------------  290 (386)
Q Consensus       249 IVLvGVSRTsKTPlSiYLA~-~G~KVAN~PLVp~-v~-----------lP~---eL----------f~------------  290 (386)
                      |+|.|.|+||||=++-.||+ .|+.+-+-+.... ..           +..   .+          |.            
T Consensus         4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~~~~   83 (173)
T 3kb2_A            4 IILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKLADEDNVIIDRFVYSNLVYAKKFKDYSILTER   83 (173)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTCHHHHHHHHHHHTTCCSEEEESCHHHHHHHTTTBTTCCCCCHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhHHHHHHHHHHHHHhCCCeEEeeeecchHHHHHHHHHhhHhhHH
Confidence            79999999999999999995 4877654432110 00           000   00          00            


Q ss_pred             ---------cCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCH---HHHHHHHHHHHHHHhhCC-CCcEE-ccC
Q 016625          291 ---------VDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEM---DYVREELEFAGRIFAQNP-VWPVI-VTG  356 (386)
Q Consensus       291 ---------i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~---e~I~~EL~~A~~lf~k~~-~~pvI-VT~  356 (386)
                               ..+..+|-|+.+++.+.+--..|    +-      .+.+.   +++++..+   ++....+ .+-+| .++
T Consensus        84 ~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r----~r------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~id~~~  150 (173)
T 3kb2_A           84 QLRFIEDKIKAKAKVVYLHADPSVIKKRLRVR----GD------EYIEGKDIDSILELYR---EVMSNAGLHTYSWDTGQ  150 (173)
T ss_dssp             HHHHHHHHHTTTEEEEEEECCHHHHHHHHHHH----SC------SCCCHHHHHHHHHHHH---HHHHTCSSCEEEEETTT
T ss_pred             HHHHHhccCCCCCEEEEEeCCHHHHHHHHHhc----CC------cchhhhHHHHHHHHHH---HHHhhcCCCEEEEECCC
Confidence                     13567899999999987633344    21      12222   23333222   2222221 34456 677


Q ss_pred             ccHHHHHHHHHHHHhcccc
Q 016625          357 KAIEETAAVVLRLYHDRKH  375 (386)
Q Consensus       357 kSIEEtAa~Il~~~~~r~~  375 (386)
                      +++||++..|++.++...+
T Consensus       151 ~~~~ev~~~I~~~~~~~~~  169 (173)
T 3kb2_A          151 WSSDEIAKDIIFLVELEHH  169 (173)
T ss_dssp             SCHHHHHHHHHHHHHHGGG
T ss_pred             CCHHHHHHHHHHHHhCCCc
Confidence            8999999999999887543
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} Back     alignment and structure
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} Back     alignment and structure
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} Back     alignment and structure
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* Back     alignment and structure
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} Back     alignment and structure
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Back     alignment and structure
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 Back     alignment and structure
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} Back     alignment and structure
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 Back     alignment and structure
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Back     alignment and structure
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Back     alignment and structure
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A Back     alignment and structure
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A Back     alignment and structure
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Back     alignment and structure
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 Back     alignment and structure
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 Back     alignment and structure
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} Back     alignment and structure
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Back     alignment and structure
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* Back     alignment and structure
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* Back     alignment and structure
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* Back     alignment and structure
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} Back     alignment and structure
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* Back     alignment and structure
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} Back     alignment and structure
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Back     alignment and structure
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} Back     alignment and structure
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* Back     alignment and structure
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A Back     alignment and structure
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Back     alignment and structure
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} Back     alignment and structure
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Back     alignment and structure
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* Back     alignment and structure
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* Back     alignment and structure
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} Back     alignment and structure
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} Back     alignment and structure
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 Back     alignment and structure
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* Back     alignment and structure
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Back     alignment and structure
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Back     alignment and structure
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Back     alignment and structure
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A Back     alignment and structure
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* Back     alignment and structure
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Back     alignment and structure
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A Back     alignment and structure
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 Back     alignment and structure
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Back     alignment and structure
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A Back     alignment and structure
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Back     alignment and structure
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* Back     alignment and structure
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} Back     alignment and structure
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 Back     alignment and structure
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Back     alignment and structure
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* Back     alignment and structure
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Back     alignment and structure
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Back     alignment and structure
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 Back     alignment and structure
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 Back     alignment and structure
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Back     alignment and structure
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Back     alignment and structure
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Back     alignment and structure
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Back     alignment and structure
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Back     alignment and structure
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} Back     alignment and structure
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Back     alignment and structure
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d1kaga_169 Shikimate kinase (AroK) {Escherichia coli [TaxId: 97.72
d1zp6a1176 Hypothetical protein Atu3015 {Agrobacterium tumefa 97.61
d1knqa_171 Gluconate kinase {Escherichia coli [TaxId: 562]} 97.37
d1e6ca_170 Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax 97.16
d1khta_190 Adenylate kinase {Archaeon Methanococcus voltae [T 97.07
d1viaa_161 Shikimate kinase (AroK) {Campylobacter jejuni [Tax 97.06
d2iyva1165 Shikimate kinase (AroK) {Mycobacterium tuberculosi 97.06
d1nksa_194 Adenylate kinase {Archaeon Sulfolobus acidocaldari 96.91
d1q3ta_223 CMP kinase {Streptococcus pneumoniae [TaxId: 1313] 96.83
d1y63a_174 Probable kinase LmjF30.1890 {Leishmania major [Tax 96.76
d1rkba_173 Adenylate kinase {Human (Homo sapiens), isoenzyme 96.74
d1qhxa_178 Chloramphenicol phosphotransferase {Streptomyces v 96.62
d1ak2a1190 Adenylate kinase {Cow (Bos taurus), mitochondrial 96.49
d2cdna1181 Adenylate kinase {Mycobacterium tuberculosis [TaxI 96.27
d1zaka1189 Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} 96.2
d1ukza_196 Uridylate kinase {Baker's yeast (Saccharomyces cer 95.91
d1x6va3195 Adenosine-5'phosphosulfate kinase (APS kinase) {Hu 95.82
d1qf9a_194 UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 95.76
d1teva_194 UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] 95.68
d2ak3a1189 Adenylate kinase {Cow (Bos taurus), mitochondrial 94.88
d1akya1180 Adenylate kinase {Baker's yeast (Saccharomyces cer 94.19
d3adka_194 Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} 93.77
d4tmka_210 Thymidylate kinase {Escherichia coli [TaxId: 562]} 93.23
d1s96a_205 Guanylate kinase {Escherichia coli [TaxId: 562]} 92.95
d1ckea_225 CMP kinase {Escherichia coli [TaxId: 562]} 92.17
d1g41a_ 443 HslU {Haemophilus influenzae [TaxId: 727]} 92.12
d1znwa1182 Guanylate kinase {Mycobacterium tuberculosis [TaxI 90.63
d1nn5a_209 Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 89.86
d1tmka_214 Thymidylate kinase {Baker's yeast (Saccharomyces c 89.43
d1xjca_165 Molybdopterin-guanine dinucleotide biosynthesis pr 88.78
d2bdta1176 Hypothetical protein BH3686 {Bacillus halodurans [ 87.89
d1lw7a2192 Transcriptional regulator NadR, ribosylnicotinamid 87.5
d1zina1182 Adenylate kinase {Bacillus stearothermophilus [Tax 87.31
d1np6a_170 Molybdopterin-guanine dinucleotide biosynthesis pr 86.43
d1e4va1179 Adenylate kinase {Escherichia coli [TaxId: 562]} 86.21
d1bifa1213 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata 85.96
d2cxxa1184 GTP-binding protein engB {Pyrococcus horikoshii [T 85.48
d1p3da196 UDP-N-acetylmuramate-alanine ligase MurC {Haemophi 84.71
d1s3ga1182 Adenylate kinase {Bacillus globisporus [TaxId: 145 83.03
d1gkya_186 Guanylate kinase {Baker's yeast (Saccharomyces cer 83.03
d1z06a1165 Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} 82.41
d1ky3a_175 Rab-related protein ypt7p {Baker's yeast (Saccharo 82.06
d1m8pa3183 ATP sulfurylase C-terminal domain {Fungus (Penicil 81.28
d1lvga_190 Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 81.25
d2i3ba1189 Cancer-related NTPase, C1orf57 {Human (Homo sapien 81.17
d1gvnb_ 273 Plasmid maintenance system epsilon/zeta, toxin zet 81.01
d1sxja2253 Replication factor C1 {Baker's yeast (Saccharomyce 80.59
d1xp8a1268 RecA protein, ATPase-domain {Deinococcus radiodura 80.31
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=7.4e-06  Score=64.54  Aligned_cols=117  Identities=11%  Similarity=0.062  Sum_probs=69.4

Q ss_pred             cEEEEccCCCCCChhhHHhh-hcCceeeeccccC---------------------------------------CCCCC--
Q 016625          248 DIILSGVSRTGKTPLSIYLA-QKGYKVANVPIVM---------------------------------------GVELP--  285 (386)
Q Consensus       248 DIVLvGVSRTsKTPlSiYLA-~~G~KVAN~PLVp---------------------------------------~v~lP--  285 (386)
                      -|||+|+++||||=++-.|| +.|+.+-+.-..-                                       .....  
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSV   83 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTTGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccchhh
Confidence            49999999999999999999 5687765432220                                       00000  


Q ss_pred             ------ccccccCCCcEEEEecChhHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCCcEE-ccCcc
Q 016625          286 ------KSLFQVDPEKVFGLTINPLVLQSIRKARARSLGFRDEIRSNYSEMDYVREELEFAGRIFAQNPVWPVI-VTGKA  358 (386)
Q Consensus       286 ------~eLf~i~~~KI~GLTIdperL~~IR~eRl~~lGl~~~~~S~YAs~e~I~~EL~~A~~lf~k~~~~pvI-VT~kS  358 (386)
                            ..|  ....+.+-+..++..|..-..+|.....    ....-.+.+.+.+....-..+|++. .--+| +++++
T Consensus        84 ~~~~~~~~l--~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~y~~~-~d~~Idt~~~s  156 (169)
T d1kaga_          84 KSRETRNRL--SARGVVVYLETTIEKQLARTQRDKKRPL----LHVETPPREVLEALANERNPLYEEI-ADVTIRTDDQS  156 (169)
T ss_dssp             GSHHHHHHH--HHHSEEEECCCCHHHHHSCC------CC----SSSSCCCHHHHHHHHHHHHHHHHHH-CSEEC-----C
T ss_pred             hhhhhhHHh--hhcceeeeccCcHHHhhhHhhhccccch----hcccccchhHHHHHHHHhhhhhhcc-CCEEEECCCCC
Confidence                  111  1124556666666666552222221111    2334556777777777778888875 23577 99999


Q ss_pred             HHHHHHHHHHHHh
Q 016625          359 IEETAAVVLRLYH  371 (386)
Q Consensus       359 IEEtAa~Il~~~~  371 (386)
                      +||++..|++.++
T Consensus       157 ~ee~v~~Ii~~le  169 (169)
T d1kaga_         157 AKVVANQIIHMLE  169 (169)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999873
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} Back     information, alignment and structure
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Back     information, alignment and structure
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} Back     information, alignment and structure
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} Back     information, alignment and structure
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Back     information, alignment and structure
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Back     information, alignment and structure
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure