Citrus Sinensis ID: 016628

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380------
MVSASPSPQKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF
ccccccccccccccccccccccccccccHHHHHHHHHHHHHccHHcHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHEEcccc
cccccccccHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHEEHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccc
mvsaspspqkevesnkkwsdgeptrrakWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINlhecvpgvrfdryidlgrhafgpklgpwivlpqqLIVQVGCDIVYMVTGGKCLKKFVEMacshckplrQTFWILIFGSLHFFlsqlpdinsvsSVSLAAAVMSLSYSTIAWagslshgrienvsyaykhtssaDYMFRVFNALGQISFAFAGHAVALEIQatipstpekpskiLMWKGALGAYFVNAICYFPVALIGYwafgqdvddnVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMmikrmnfppgaAVRVVARSAYVAFTLFVGvtfpffgdllgffggfgftptsyfvspf
mvsaspspqkevesnkkwsdgeptRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF
MVSASPSPQKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINsvssvslaaavmslsysTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGaavrvvarsayvaFTLFVGVtfpffgdllgffggfgftptSYFVSPF
*************************RAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPST**KPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFV***
***************************KWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPE*PSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF
***********************TRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF
***************KKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
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MVSASPSPQKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query386 2.2.26 [Sep-21-2011]
Q9C6M2440 Lysine histidine transpor yes no 0.971 0.852 0.76 1e-162
Q9FKS8446 Lysine histidine transpor no no 0.963 0.834 0.632 1e-140
Q9C733453 Lysine histidine transpor no no 0.968 0.825 0.596 1e-129
Q9LRB5441 Lysine histidine transpor no no 0.989 0.866 0.594 1e-127
Q9SR44441 Lysine histidine transpor no no 0.992 0.868 0.602 1e-127
O22719451 Lysine histidine transpor no no 0.953 0.815 0.537 1e-112
Q9C9J0448 Lysine histidine transpor no no 0.984 0.848 0.554 1e-107
Q9SS86455 Lysine histidine transpor no no 0.948 0.804 0.530 1e-106
Q9SX98519 Lysine histidine transpor no no 0.914 0.680 0.362 2e-62
Q84WE9478 Lysine histidine transpor no no 0.906 0.732 0.317 7e-44
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function desciption
 Score =  572 bits (1474), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 285/375 (76%), Positives = 326/375 (86%)

Query: 9   QKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISW 68
           + + +S +KW+  +P+R AKWWYSTFH VTAMIGAGVLSLPYAMAYLGWGPGT VL ++W
Sbjct: 12  ETDRKSGEKWTAEDPSRPAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPGTFVLAMTW 71

Query: 69  VTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVT 128
             TLNTMWQM+ LHECVPG RFDRYIDLGR+AFGPKLGPWIVLPQQLIVQVGC+IVYMVT
Sbjct: 72  GLTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIVQVGCNIVYMVT 131

Query: 129 GGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYST 188
           GGKCLK+FVE+ CS C P+RQ++WIL FG +HF LSQLP+ NSV+ VSLAAAVMSL YST
Sbjct: 132 GGKCLKQFVEITCSTCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSLAAAVMSLCYST 191

Query: 189 IAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPE 248
           IAW GS++HGR+ +VSY YK T+  D+ FRVFNALGQISFAFAGHAVALEIQAT+PSTPE
Sbjct: 192 IAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVALEIQATMPSTPE 251

Query: 249 KPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVV 308
           +PSK+ MW+G +GAY VNA+CYFPVALI YWAFGQDVDDNVLM L+RP WLIAAANLMVV
Sbjct: 252 RPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVDDNVLMNLQRPAWLIAAANLMVV 311

Query: 309 VHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLL 368
           VHVIGSYQVFAMPVF LLE MM+ +  F  G  +R   R+ YVAFTLF+GV+FPFFGDLL
Sbjct: 312 VHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTRTIYVAFTLFIGVSFPFFGDLL 371

Query: 369 GFFGGFGFTPTSYFV 383
           GFFGGFGF PTS+F+
Sbjct: 372 GFFGGFGFAPTSFFL 386
Amino acid transporter.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
224099345435 lysine/histidine transporter [Populus tr 0.987 0.875 0.840 1e-180
224111726423 lysine/histidine transporter [Populus tr 0.953 0.869 0.850 1e-178
225423911438 PREDICTED: lysine histidine transporter- 0.992 0.874 0.820 1e-177
356495960437 PREDICTED: lysine histidine transporter- 0.992 0.876 0.796 1e-174
449434650437 PREDICTED: lysine histidine transporter- 0.992 0.876 0.796 1e-173
147858122420 hypothetical protein VITISV_012213 [Viti 0.935 0.859 0.842 1e-172
357488425439 Lysine/histidine transporter [Medicago t 0.992 0.872 0.776 1e-170
356535563419 PREDICTED: lysine histidine transporter- 0.943 0.868 0.824 1e-169
388513405439 unknown [Lotus japonicus] 0.992 0.872 0.779 1e-168
357443021460 Lysine/histidine transporter [Medicago t 0.992 0.832 0.729 1e-165
>gi|224099345|ref|XP_002311447.1| lysine/histidine transporter [Populus trichocarpa] gi|222851267|gb|EEE88814.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 322/383 (84%), Positives = 350/383 (91%), Gaps = 2/383 (0%)

Query: 1   MVSASPSPQKEVESNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPG 60
           MVSASPS  KE +S  KW++G+P RRAKWWYSTFH VTAMIGAGVLSLPYAMAYLGWGPG
Sbjct: 1   MVSASPS--KEDQSIGKWTEGDPARRAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGWGPG 58

Query: 61  TMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVG 120
             VLV+SW  TLNTMWQMI LHECVPG RFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVG
Sbjct: 59  ITVLVLSWCMTLNTMWQMIELHECVPGTRFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVG 118

Query: 121 CDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAA 180
           CDIVYMVTGGK LKKF+EM C+ C P+RQ++WILIFG +HFFLSQLP+ NSV+ VSLAAA
Sbjct: 119 CDIVYMVTGGKSLKKFMEMTCASCTPIRQSYWILIFGGIHFFLSQLPNFNSVAGVSLAAA 178

Query: 181 VMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQ 240
           VMSL YSTIAWAGSL+HG+I+NVSYAYK+TS+ADYMFRVFNALG+ISFAFAGHAV LEIQ
Sbjct: 179 VMSLGYSTIAWAGSLAHGQIDNVSYAYKNTSAADYMFRVFNALGEISFAFAGHAVVLEIQ 238

Query: 241 ATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLI 300
           ATIPST EKPSKI MWKGALGAYF+NAICYFPVALIGYWAFGQDVDDNVLM LKRP WLI
Sbjct: 239 ATIPSTTEKPSKIPMWKGALGAYFINAICYFPVALIGYWAFGQDVDDNVLMELKRPAWLI 298

Query: 301 AAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGAAVRVVARSAYVAFTLFVGVT 360
           A+ANLMVVVHVIGSYQV+AMPVF +LE MM+KR +FPPG A+R+V RS YVAFTLFVGVT
Sbjct: 299 ASANLMVVVHVIGSYQVYAMPVFDMLERMMMKRFSFPPGLALRLVTRSTYVAFTLFVGVT 358

Query: 361 FPFFGDLLGFFGGFGFTPTSYFV 383
           FPFFGDLLGFFGGFGF PTSYF+
Sbjct: 359 FPFFGDLLGFFGGFGFAPTSYFL 381

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111726|ref|XP_002315954.1| lysine/histidine transporter [Populus trichocarpa] gi|222864994|gb|EEF02125.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225423911|ref|XP_002281867.1| PREDICTED: lysine histidine transporter-like 6 [Vitis vinifera] gi|297737853|emb|CBI27054.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356495960|ref|XP_003516838.1| PREDICTED: lysine histidine transporter-like 6-like [Glycine max] Back     alignment and taxonomy information
>gi|449434650|ref|XP_004135109.1| PREDICTED: lysine histidine transporter-like 6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147858122|emb|CAN79675.1| hypothetical protein VITISV_012213 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357488425|ref|XP_003614500.1| Lysine/histidine transporter [Medicago truncatula] gi|355515835|gb|AES97458.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information
>gi|356535563|ref|XP_003536314.1| PREDICTED: lysine histidine transporter-like 6-like [Glycine max] Back     alignment and taxonomy information
>gi|388513405|gb|AFK44764.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|357443021|ref|XP_003591788.1| Lysine/histidine transporter [Medicago truncatula] gi|355480836|gb|AES62039.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query386
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.930 0.815 0.704 7e-141
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.886 0.775 0.566 2.3e-110
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.901 0.780 0.566 1.6e-109
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.930 0.814 0.542 2.4e-108
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.901 0.789 0.547 2.5e-106
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.901 0.768 0.535 3e-101
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.867 0.747 0.522 6.3e-92
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.831 0.711 0.513 2.5e-88
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.886 0.658 0.348 4.3e-54
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.691 0.558 0.315 3.9e-37
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1378 (490.1 bits), Expect = 7.0e-141, P = 7.0e-141
 Identities = 255/362 (70%), Positives = 289/362 (79%)

Query:     1 MVSASP-SPQKEVE--SNKKWSDGEPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGW 57
             MVS+SP SP KE +  S +KW+  +P+R AKWWYSTFH VTAMIGAGVLSLPYAMAYLGW
Sbjct:     1 MVSSSPVSPSKETDRKSGEKWTAEDPSRPAKWWYSTFHTVTAMIGAGVLSLPYAMAYLGW 60

Query:    58 GPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAFGPKLGPWIVLPQQLIV 117
             GPGT VL ++W  TLNTMWQM+ LHECVPG RFDRYIDLGR+AFGPKLGPWIVLPQQLIV
Sbjct:    61 GPGTFVLAMTWGLTLNTMWQMVQLHECVPGTRFDRYIDLGRYAFGPKLGPWIVLPQQLIV 120

Query:   118 QVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDINXXXXXXX 177
             QVGC+IVYMVTGGKCLK+FVE+ CS C P+RQ++WIL FG +HF LSQLP+ N       
Sbjct:   121 QVGCNIVYMVTGGKCLKQFVEITCSTCTPVRQSYWILGFGGVHFILSQLPNFNSVAGVSL 180

Query:   178 XXXXXXXXXXTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVAL 237
                       TIAW GS++HGR+ +VSY YK T+  D+ FRVFNALGQISFAFAGHAVAL
Sbjct:   181 AAAVMSLCYSTIAWGGSIAHGRVPDVSYDYKATNPGDFTFRVFNALGQISFAFAGHAVAL 240

Query:   238 EIQATIPSTPEKPSKILMWKGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPG 297
             EIQAT+PSTPE+PSK+ MW+G +GAY VNA+CYFPVALI YWAFGQDVDDNVLM L+RP 
Sbjct:   241 EIQATMPSTPERPSKVPMWQGVIGAYVVNAVCYFPVALICYWAFGQDVDDNVLMNLQRPA 300

Query:   298 WLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMIKRMNFPPGXXXXXXXXXXXXXFTLFV 357
             WLIAAANLMVVVHVIGSYQVFAMPVF LLE MM+ +  F  G             FTLF+
Sbjct:   301 WLIAAANLMVVVHVIGSYQVFAMPVFDLLERMMVNKFGFKHGVVLRFFTRTIYVAFTLFI 360

Query:   358 GV 359
             GV
Sbjct:   361 GV 362
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9C6M2LHTL6_ARATHNo assigned EC number0.760.97150.8522yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query386
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 7e-88
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 7e-16
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 1e-12
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  271 bits (694), Expect = 7e-88
 Identities = 126/369 (34%), Positives = 190/369 (51%), Gaps = 13/369 (3%)

Query: 25  RRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHEC 84
                W + F+ + A+IGAGVLSLPYA   LGW PG ++LVI  + +L T+  ++   + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 85  VPGV---RFDRYIDLGRHAFGPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMAC 141
           V  V   R   Y DLG   FGPK G  ++L   L+   G  I Y++  G  L    +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 142 SHCKPLRQTFWILIFGSLHFFLSQLPDINSVSSVSLAAAVMSLSYSTIAWAGSLSHGRIE 201
             C  +   ++I+IFG +   LS +P+++++S +SL AAV SL Y  I        G + 
Sbjct: 120 DTC-HISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVLT 177

Query: 202 NVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGALG 261
                     +   + R+F A+G I FAF GHAV L IQ T+ S P K     M K  L 
Sbjct: 178 AQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSKFKA--MTKVLLT 234

Query: 262 AYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMP 321
           A  +  + Y  V L+GY AFG +V  N+L+ L +  WLI  ANL++V+H++ SY + A P
Sbjct: 235 AIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFP 294

Query: 322 VFHLLEGMMIKR----MNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFT 377
           +  ++E ++ ++     + P    +RVV RS  V  T  + ++ PF GD L   G     
Sbjct: 295 IRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGA 354

Query: 378 PTSYFVSPF 386
           P ++ + P 
Sbjct: 355 PLTFILPPL 363

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 386
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.91
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.91
PRK10483414 tryptophan permease; Provisional 99.9
PRK09664415 tryptophan permease TnaB; Provisional 99.9
PRK15132403 tyrosine transporter TyrP; Provisional 99.88
PRK13629443 threonine/serine transporter TdcC; Provisional 99.85
TIGR00814397 stp serine transporter. The HAAAP family includes 99.84
PRK10655438 potE putrescine transporter; Provisional 99.58
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.57
PRK10249458 phenylalanine transporter; Provisional 99.57
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.56
KOG1287 479 consensus Amino acid transporters [Amino acid tran 99.55
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.55
PRK15049 499 L-asparagine permease; Provisional 99.54
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.54
PRK10644445 arginine:agmatin antiporter; Provisional 99.53
TIGR00909429 2A0306 amino acid transporter. 99.52
PRK11387471 S-methylmethionine transporter; Provisional 99.52
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.51
PRK10746461 putative transport protein YifK; Provisional 99.51
PRK11021410 putative transporter; Provisional 99.5
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 99.5
PRK10238456 aromatic amino acid transporter; Provisional 99.48
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.45
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.45
PRK10836 489 lysine transporter; Provisional 99.44
PRK10580457 proY putative proline-specific permease; Provision 99.43
TIGR00930 953 2a30 K-Cl cotransporter. 99.41
TIGR00911 501 2A0308 L-type amino acid transporter. 99.39
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.39
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.37
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.37
TIGR00913 478 2A0310 amino acid permease (yeast). 99.35
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.33
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.31
PF03845320 Spore_permease: Spore germination protein; InterPr 99.3
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.21
COG0531466 PotE Amino acid transporters [Amino acid transport 99.13
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.04
TIGR00907 482 2A0304 amino acid permease (GABA permease). 98.92
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 98.92
KOG3832319 consensus Predicted amino acid transporter [Genera 98.88
PRK15238 496 inner membrane transporter YjeM; Provisional 98.82
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.75
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.67
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.51
PRK11375484 allantoin permease; Provisional 98.16
COG3949349 Uncharacterized membrane protein [Function unknown 98.11
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.08
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.03
TIGR00813407 sss transporter, SSS family. have different number 98.02
PRK12488 549 acetate permease; Provisional 97.96
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 97.93
COG1457442 CodB Purine-cytosine permease and related proteins 97.82
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 97.81
PRK09395 551 actP acetate permease; Provisional 97.69
KOG1289 550 consensus Amino acid transporters [Amino acid tran 97.62
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.55
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.5
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.47
PRK10484 523 putative transporter; Provisional 97.41
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.38
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.15
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.13
PRK15419 502 proline:sodium symporter PutP; Provisional 97.07
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 96.95
PRK11017404 codB cytosine permease; Provisional 96.87
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.61
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.56
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.53
COG4147 529 DhlC Predicted symporter [General function predict 96.11
PRK15015 701 carbon starvation protein A; Provisional 96.09
COG0733439 Na+-dependent transporters of the SNF family [Gene 95.95
PF01566358 Nramp: Natural resistance-associated macrophage pr 95.23
KOG1288 945 consensus Amino acid transporters [Amino acid tran 94.77
COG1966 575 CstA Carbon starvation protein, predicted membrane 94.54
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 94.36
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 94.22
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 92.64
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 90.16
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 89.8
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 88.5
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 84.99
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 83.28
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 82.99
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 82.05
PRK15433439 branched-chain amino acid transport system 2 carri 80.4
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=8.3e-54  Score=395.63  Aligned_cols=349  Identities=20%  Similarity=0.231  Sum_probs=307.9

Q ss_pred             cccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhcccc---CCCcccCCHHHHHHHh
Q 016628           24 TRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHEC---VPGVRFDRYIDLGRHA  100 (386)
Q Consensus        24 ~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~---~~~~~~~~y~~l~~~~  100 (386)
                      ++..|..++..|+.++++|+|+|++|++|+++|++.|.+...+.+.++.||++.+.+|.+.   ..+....+|++.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            5668999999999999999999999999999999999999999999999999999998542   2223346888876655


Q ss_pred             h----------CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHHHHHHHHHhhhcCCCcc
Q 016628          101 F----------GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWILIFGSLHFFLSQLPDIN  170 (386)
Q Consensus       101 ~----------G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~  170 (386)
                      +          |+ ++|.+++.++.++|+|.|++|+++++++++++.+..  .....+.+.|+.+..+.+++++++|++|
T Consensus       124 ~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--~~~~~s~~~~i~~~~~~~lll~~Ir~Lk  200 (449)
T KOG1304|consen  124 MEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--SPGVLSVRLYILIQLPPLLLLNLIRNLK  200 (449)
T ss_pred             HcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--CCCCccHHHHHHHHHHHHHHHHHHHhhH
Confidence            4          54 678899999999999999999999999999999942  2346788999999999999999999999


Q ss_pred             chhhHHHHHHHHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCc
Q 016628          171 SVSSVSLAAAVMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKP  250 (386)
Q Consensus       171 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p  250 (386)
                      .++.+|.+++++.++...++.++.+....      +.++.+...++.++...+|+.+|||+|+.++.|++++    ||+|
T Consensus       201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~----Mk~P  270 (449)
T KOG1304|consen  201 ILSPFSLFANVFILVGLAIIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENS----MKKP  270 (449)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhc----ccCh
Confidence            99999999999888766666665544322      1112233456889999999999999999999999999    8999


Q ss_pred             cccchh-hhhhHHHHHHHHHHhhhhhhhhcccCCCCChhhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHH
Q 016628          251 SKILMW-KGALGAYFVNAICYFPVALIGYWAFGQDVDDNVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGM  329 (386)
Q Consensus       251 ~~~~~~-~~~~~~~~~~~~~y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~  329 (386)
                      +++.-+ +++..++.+++++|..+|.+||++||+++++.++.|+|+ +++.+.+++++++.++++||+|++|..+++|+.
T Consensus       271 ~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~  349 (449)
T KOG1304|consen  271 QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPG  349 (449)
T ss_pred             hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHh
Confidence            987643 677899999999999999999999999999999999998 899999999999999999999999999999999


Q ss_pred             HHhhcCCCCCchhhhhHHHHHHHHHHHHHHhcccchhhhhhcccccccceeEeecCC
Q 016628          330 MIKRMNFPPGAAVRVVARSAYVAFTLFVGVTFPFFGDLLGFFGGFGFTPTSYFVSPF  386 (386)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Gs~~~~~~~~i~P~l  386 (386)
                      +.++.+.+++++..+..|..++++++++|..+||++.+++++||++++.+++++|++
T Consensus       350 i~~k~~~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~l  406 (449)
T KOG1304|consen  350 IRKKFSENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPL  406 (449)
T ss_pred             HHHhcCcchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHH
Confidence            887766666789999999999999999999999999999999999999999999984

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.66
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.52
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.29
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.52
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 97.49
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.16
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 96.64
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.66  E-value=5.6e-16  Score=149.49  Aligned_cols=294  Identities=16%  Similarity=0.109  Sum_probs=177.2

Q ss_pred             CCcccCchhhhHHhhhhcccccccchHHHHHHhhChhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628           22 EPTRRAKWWYSTFHCVTAMIGAGVLSLPYAMAYLGWGPGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF  101 (386)
Q Consensus        22 ~~~~~~s~~~~~~~li~~~iG~GiL~lP~~~~~~G~~~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~  101 (386)
                      +++|+.+.++.++..+++++|+|++.+|...++.|. .+++..++.++........+.|...+.|+..  .+.+..++.+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~   81 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF   81 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence            467899999999999999999999999998888887 4888889999998888888888766666532  6788889999


Q ss_pred             CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHHccCCcccchhHHHH-HHHHHHHhhhcCCCccchhhHHHHHH
Q 016628          102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMACSHCKPLRQTFWIL-IFGSLHFFLSQLPDINSVSSVSLAAA  180 (386)
Q Consensus       102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~  180 (386)
                      ||++| ++..+..++........+....++++..+++..    . .....+.+ +...+++-....+..|...+++.+..
T Consensus        82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~  155 (445)
T 3l1l_A           82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL----K-DPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT  155 (445)
T ss_dssp             CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG----G-SHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc----c-ccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence            98776 445555555444444444444444443332221    0 00011111 11122222233446666666666555


Q ss_pred             HHHHHHHHHHhhhhccccccCCccccccCCCchhhhhHHHHHHHHHHHHhcCCcchhhchhcCCCCCCCccccchhhhhh
Q 016628          181 VMSLSYSTIAWAGSLSHGRIENVSYAYKHTSSADYMFRVFNALGQISFAFAGHAVALEIQATIPSTPEKPSKILMWKGAL  260 (386)
Q Consensus       181 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~~~~~m~~p~~~~~~~~~~  260 (386)
                      ...+...++.....+...+.+....+. ......++.++..++....|+|.|.+......+|    +|||+| +++|+..
T Consensus       156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e----~k~p~r-~ip~a~~  229 (445)
T 3l1l_A          156 VLALIPIVGIAVFGWFWFRGETYMAAW-NVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGV----VKNPKR-NVPIATI  229 (445)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGG----BSSHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChhhccccc-CccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHH----hcCccc-cccHHHH
Confidence            544433332222222222111111111 0111224667889999999999999999999999    899976 7889999


Q ss_pred             HHHHHHHHHHhhhhhhhhcccCCCCC----h---hhhhccCCChHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHH
Q 016628          261 GAYFVNAICYFPVALIGYWAFGQDVD----D---NVLMALKRPGWLIAAANLMVVVHVIGSYQVFAMPVFHLLEGMMI  331 (386)
Q Consensus       261 ~~~~~~~~~y~~~g~~gy~~fg~~~~----~---~il~~~~~~~~~~~~~~i~~~i~~~~s~pl~~~p~~~~~~~~~~  331 (386)
                      .+..++.++|.+..+......+.+..    .   .+.+.... ++...+..+...+..+.+.-...+..-+.+..+-+
T Consensus       230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~  306 (445)
T 3l1l_A          230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALG-DTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD  306 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHC-TTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999887766655543321    1   11222111 23444455556666666655555555565555543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query386
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 96.49
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.49  E-value=0.31  Score=44.72  Aligned_cols=110  Identities=14%  Similarity=0.110  Sum_probs=58.9

Q ss_pred             CchhhhHHhhhhcccccc-cchHHHHHHhhChh----hHHHHHHHHHHHHHHHHHHHhhccccCCCcccCCHHHHHHHhh
Q 016628           27 AKWWYSTFHCVTAMIGAG-VLSLPYAMAYLGWG----PGTMVLVISWVTTLNTMWQMINLHECVPGVRFDRYIDLGRHAF  101 (386)
Q Consensus        27 ~s~~~~~~~li~~~iG~G-iL~lP~~~~~~G~~----~g~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~~y~~l~~~~~  101 (386)
                      .|..+-++..++..+|.| +.-.||...+-|-.    +=++++++.|.-..+.=..+.|..++   .....+..+.....
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~---g~i~~~~~i~~~~~   81 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA---QGHGTTPAIFYLLW   81 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT---TTCCSHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CcccHHHHHHHHhc
Confidence            356778899999999998 88899986655532    22333333333333333344443222   12346777766655


Q ss_pred             CCCccCeeehhhHHHHhhhhheeeeeechhchHHHHHHH
Q 016628          102 GPKLGPWIVLPQQLIVQVGCDIVYMVTGGKCLKKFVEMA  140 (386)
Q Consensus       102 G~~~g~~~~~~~~~~~~~g~~~~y~v~~~~~l~~~~~~~  140 (386)
                      +.+..+. +.....+..+..++-|.+..+-.+..+.+..
T Consensus        82 ~~~~~~g-iG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~  119 (509)
T d2a65a1          82 RNRFAKI-LGVFGLWIPLVVAIYYVYIESWTLGFAIKFL  119 (509)
T ss_dssp             CSHHHHH-HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcchhH-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4322233 2223334444455556666565555444443