Citrus Sinensis ID: 016634

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
MVNLVAICMLFGCILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKRQKTRVKLQSNNNSSRNQLLFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNARLATE
cHHHHHHHHHHHHHHHccccccccEEEEEcccccccHHHHHcccccccccccccccccHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEEEEEEEEEcccccccccccccccEEEEccccccccccccccccEEEEccccccHHHHHHHHcccccccEEEEcccccccEEEEccccccccccEEEEEcccccccEEEEEEEEEEccEEEccccccEEEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHcccccccHEEEEcccHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHccccEEEEEEEEEccccEEEEEEEEcccccEEEEccccccccccHHHHccccccccccccccccccEEcccccHHcccccccccccccccEEEEEEccccccEEEEEEEEEEEcccccccccccEEccEEEEEEEcccccEEEccccccEcccccccccHHHHHHHccccccEEEEEEcccccEEEEEcccccccccccEEEEccccccEEEEEEEEEEEccEEEcccccEEEEEcccEEEEcccHHHHHHHHHHHHHHcccccccccccccHHEccccccc
MVNLVAICMLFGCIlldgsdavsFSSKLVHRFSDEAKERWisksgnvsvadswpkknSVEYLELLLSNDWKRQKTRVKLQsnnnssrnqllfpsegsqthffgnqfYWLHYTwidigtpnVSFLVALDagsnllwvpcqciqcaplsasyytsldrnlseydpssssssknvscshplcksrssckslkdpcpyiadystedtsssgylvddILHLAsfskhapqssvqssviigcgrkqtgsyldgaapdgvmglglgdvsvPSLLAKAGliqnsfsicfdendsgsvffgdqgpatqqstsflpigekydAYFVGVESYcignscltqsGFQALvdsgasftflptEIYAEVVVKFDKLVSSkrislqgnswKYCYNARLATE
MVNLVAICMLFGCILLDGSDAVSFSSKLVHRFsdeakerwisksgnvsvadswpkkNSVEYLELLLSNDWKRQKTRVKlqsnnnssrnqLLFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYdpssssssknvscshplcksrssckslkdPCPYIADYSTEDTSSSGYLVDDILHLASFSkhapqssvQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSskrislqgnswkycynarlate
MVNLVAICMLFGCILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKRQKTRVKlqsnnnssrnqllFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLseydpssssssknvscsHPlcksrssckslkDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNARLATE
**NLVAICMLFGCILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWK**************************QTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSL*************************************CPYIADYS******SGYLVDDILHLASFS*********SSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQ******STSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNAR****
*VNLVAICMLFGCILLDGSDAVSFSSKLVHRFS******************************LLL*************************************NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCS*****************PYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVS******QGNSWKYCYNARL***
MVNLVAICMLFGCILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKRQKTRVKLQSNNNSSRNQLLFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRN***************************CKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSK*********SVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNARLATE
MVNLVAICMLFGCILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKRQKTRVKLQSNNNSSRNQLLFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSK****QGNSW***********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MVNLVAICMLFGCILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKRQKTRVKLQSNNNSSRNQLLFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNARLATE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query385 2.2.26 [Sep-21-2011]
Q9LX20 528 Aspartic proteinase-like yes no 0.945 0.689 0.528 1e-111
Q9S9K4 475 Aspartic proteinase-like no no 0.620 0.503 0.304 1e-21
Q766C2438 Aspartic proteinase nepen N/A no 0.740 0.650 0.237 3e-12
Q6XBF8437 Aspartic proteinase CDR1 no no 0.810 0.713 0.239 4e-12
Q0IU52 410 Aspartic proteinase Asp1 no no 0.618 0.580 0.257 2e-11
A2ZC67 410 Aspartic proteinase Asp1 N/A no 0.618 0.580 0.253 6e-10
Q766C3437 Aspartic proteinase nepen N/A no 0.345 0.304 0.290 3e-08
Q9LS40500 Protein ASPARTIC PROTEASE no no 0.631 0.486 0.264 6e-07
Q9LZL3 453 Aspartic proteinase PCS1 no no 0.550 0.467 0.265 2e-06
Q9GMY8387 Pepsin A OS=Sorex unguicu N/A no 0.623 0.620 0.272 1e-05
>sp|Q9LX20|ASPL1_ARATH Aspartic proteinase-like protein 1 OS=Arabidopsis thaliana GN=At5g10080 PE=1 SV=1 Back     alignment and function desciption
 Score =  403 bits (1035), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/382 (52%), Positives = 271/382 (70%), Gaps = 18/382 (4%)

Query: 4   LVAICMLFGCILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLE 63
            +  C+LF  +  + + A  FSS+L+HRFSDE +    + S     +DS P K S+EY  
Sbjct: 7   FLLFCVLF--LATEETLASLFSSRLIHRFSDEGRASIKTPSS----SDSLPNKQSLEYYR 60

Query: 64  LLLSNDWKRQKTRVKLQSNNNSSRNQLLFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSF 123
           LL  +D++RQ+        N  ++ Q L PSEGS+T   GN F WLHYTWIDIGTP+VSF
Sbjct: 61  LLAESDFRRQRM-------NLGAKVQSLVPSEGSKTISSGNDFGWLHYTWIDIGTPSVSF 113

Query: 124 LVALDAGSNLLWVPCQCIQCAPLSASYYTSL-DRNLSEYDPSSSSSSKNVSCSHPLCKSR 182
           LVALD GSNLLW+PC C+QCAPL+++YY+SL  ++L+EY+PSSSS+SK   CSH LC S 
Sbjct: 114 LVALDTGSNLLWIPCNCVQCAPLTSTYYSSLATKDLNEYNPSSSSTSKVFLCSHKLCDSA 173

Query: 183 SSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHA---PQSSVQSSVIIGCGRK 239
           S C+S K+ CPY  +Y + +TSSSG LV+DILHL   + +      SSV++ V+IGCG+K
Sbjct: 174 SDCESPKEQCPYTVNYLSGNTSSSGLLVEDILHLTYNTNNRLMNGSSSVKARVVIGCGKK 233

Query: 240 QTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQ 299
           Q+G YLDG APDG+MGLG  ++SVPS L+KAGL++NSFS+CFDE DSG ++FGD GP+ Q
Sbjct: 234 QSGDYLDGVAPDGLMGLGPAEISVPSFLSKAGLMRNSFSLCFDEEDSGRIYFGDMGPSIQ 293

Query: 300 QSTSFLPI-GEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKF 358
           QST FL +   KY  Y VGVE+ CIGNSCL Q+ F   +DSG SFT+LP EIY +V ++ 
Sbjct: 294 QSTPFLQLDNNKYSGYIVGVEACCIGNSCLKQTSFTTFIDSGQSFTYLPEEIYRKVALEI 353

Query: 359 DKLVSSKRISLQGNSWKYCYNA 380
           D+ +++   + +G SW+YCY +
Sbjct: 354 DRHINATSKNFEGVSWEYCYES 375

Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 3EC: .EC: -
>sp|Q9S9K4|ASPL2_ARATH Aspartic proteinase-like protein 2 OS=Arabidopsis thaliana GN=At1g65240 PE=1 SV=2 Back     alignment and function description
>sp|Q766C2|NEP2_NEPGR Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1 Back     alignment and function description
>sp|Q6XBF8|CDR1_ARATH Aspartic proteinase CDR1 OS=Arabidopsis thaliana GN=CDR1 PE=1 SV=1 Back     alignment and function description
>sp|Q0IU52|ASP1_ORYSJ Aspartic proteinase Asp1 OS=Oryza sativa subsp. japonica GN=ASP1 PE=2 SV=1 Back     alignment and function description
>sp|A2ZC67|ASP1_ORYSI Aspartic proteinase Asp1 OS=Oryza sativa subsp. indica GN=ASP1 PE=2 SV=2 Back     alignment and function description
>sp|Q766C3|NEP1_NEPGR Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LS40|ASPG1_ARATH Protein ASPARTIC PROTEASE IN GUARD CELL 1 OS=Arabidopsis thaliana GN=ASPG1 PE=1 SV=1 Back     alignment and function description
>sp|Q9LZL3|PCS1L_ARATH Aspartic proteinase PCS1 OS=Arabidopsis thaliana GN=PCS1 PE=2 SV=1 Back     alignment and function description
>sp|Q9GMY8|PEPA_SORUN Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
224063191 536 predicted protein [Populus trichocarpa] 0.937 0.673 0.662 1e-139
255545620 535 Aspartic proteinase nepenthesin-2 precur 0.950 0.684 0.643 1e-137
359492825 531 PREDICTED: aspartic proteinase-like prot 0.958 0.694 0.626 1e-135
302141912 521 unnamed protein product [Vitis vinifera] 0.932 0.689 0.640 1e-135
356551638 880 PREDICTED: aspartic proteinase-like prot 0.927 0.405 0.606 1e-130
449445106 523 PREDICTED: aspartic proteinase-like prot 0.963 0.709 0.570 1e-127
255576176 542 Aspartic proteinase nepenthesin-1 precur 0.942 0.669 0.586 1e-126
356548395 525 PREDICTED: aspartic proteinase-like prot 0.916 0.672 0.603 1e-126
296082464 530 unnamed protein product [Vitis vinifera] 0.961 0.698 0.578 1e-125
225438629 511 PREDICTED: aspartic proteinase-like prot 0.909 0.684 0.602 1e-125
>gi|224063191|ref|XP_002301033.1| predicted protein [Populus trichocarpa] gi|222842759|gb|EEE80306.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 245/370 (66%), Positives = 295/370 (79%), Gaps = 9/370 (2%)

Query: 13  CILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKR 72
           C   + S  ++FSSKL+HRFSDEAK   IS+ GN S  D WPK+ S EY +LLL ND KR
Sbjct: 17  CCQFEASIGLTFSSKLIHRFSDEAKSISISRKGNAS-GDLWPKRYSFEYFQLLLGNDLKR 75

Query: 73  QKTRVKLQSNNNSSRNQLLFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSN 132
           Q+ ++       S +NQLLFPS+GSQ  FFGN+  WLHYTWIDIGTPNVSFLVALDAGS+
Sbjct: 76  QRMKL------GSQKNQLLFPSQGSQALFFGNELDWLHYTWIDIGTPNVSFLVALDAGSD 129

Query: 133 LLWVPCQCIQCAPLSASYYT-SLDRNLSEYDPSSSSSSKNVSCSHPLCKSRSSCKSLKDP 191
           LLWVPC CIQCAPLSASYY  SLDR+LSEY PS SS+S+++SC H LC+  S+CK+ KDP
Sbjct: 130 LLWVPCDCIQCAPLSASYYNISLDRDLSEYSPSLSSTSRHLSCDHQLCEWGSNCKNPKDP 189

Query: 192 CPYIADYST-EDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAP 250
           CPYI +Y   E+T+S+G+LV+D LHLAS   H  +  +Q+SV++GCGRKQ GS+ DGAAP
Sbjct: 190 CPYIFNYDDFENTTSAGFLVEDKLHLASVGDHTARKMLQASVVLGCGRKQGGSFFDGAAP 249

Query: 251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTSFLPIGEK 310
           DGVMGLG GD+SVPSLLAKAGLIQN FS+CFDENDSG + FGD+G A+QQST FLPI   
Sbjct: 250 DGVMGLGPGDISVPSLLAKAGLIQNCFSLCFDENDSGRILFGDRGHASQQSTPFLPIQGT 309

Query: 311 YDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQ 370
           Y AYFVGVESYC+GNSCL +SGF+ALVDSG+SFT+LP+E+Y E+V +FDK V++KRIS Q
Sbjct: 310 YVAYFVGVESYCVGNSCLKRSGFKALVDSGSSFTYLPSEVYNELVSEFDKQVNAKRISFQ 369

Query: 371 GNSWKYCYNA 380
              W YCYNA
Sbjct: 370 DGLWDYCYNA 379

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255545620|ref|XP_002513870.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] gi|223546956|gb|EEF48453.1| Aspartic proteinase nepenthesin-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359492825|ref|XP_002284255.2| PREDICTED: aspartic proteinase-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|302141912|emb|CBI19115.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356551638|ref|XP_003544181.1| PREDICTED: aspartic proteinase-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|449445106|ref|XP_004140314.1| PREDICTED: aspartic proteinase-like protein 1-like [Cucumis sativus] gi|449479851|ref|XP_004155727.1| PREDICTED: aspartic proteinase-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255576176|ref|XP_002528982.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] gi|223531572|gb|EEF33401.1| Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356548395|ref|XP_003542587.1| PREDICTED: aspartic proteinase-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|296082464|emb|CBI21469.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225438629|ref|XP_002281243.1| PREDICTED: aspartic proteinase-like protein 1-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
TAIR|locus:2184138 528 AT5G10080 [Arabidopsis thalian 0.935 0.681 0.478 3.9e-92
TAIR|locus:2125324 524 AT4G35880 [Arabidopsis thalian 0.890 0.654 0.341 3.5e-52
TAIR|locus:2827921 513 AT2G17760 [Arabidopsis thalian 0.927 0.695 0.319 1.9e-44
TAIR|locus:2080903 529 AT3G51330 [Arabidopsis thalian 0.924 0.672 0.311 7.8e-39
TAIR|locus:2080913 528 AT3G51350 [Arabidopsis thalian 0.475 0.346 0.361 4.8e-37
TAIR|locus:2080908 530 AT3G51340 [Arabidopsis thalian 0.877 0.637 0.313 1.9e-35
TAIR|locus:2080973 488 AT3G51360 [Arabidopsis thalian 0.464 0.366 0.312 2.5e-33
TAIR|locus:2075512 488 AT3G02740 [Arabidopsis thalian 0.407 0.321 0.319 1.4e-22
TAIR|locus:2198753 485 AT1G05840 [Arabidopsis thalian 0.485 0.385 0.285 6.6e-22
TAIR|locus:2183617 482 AT5G36260 [Arabidopsis thalian 0.659 0.526 0.241 1.6e-16
TAIR|locus:2184138 AT5G10080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 181/378 (47%), Positives = 244/378 (64%)

Query:     8 CMLFGCILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLS 67
             C+LF  +  + + A  FSS+L+HRFSDE +    +     S +DS P K S+EY  LL  
Sbjct:    11 CVLF--LATEETLASLFSSRLIHRFSDEGR----ASIKTPSSSDSLPNKQSLEYYRLLAE 64

Query:    68 NDWKRQKTRVKXXXXXXXXXXXXXFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVAL 127
             +D++RQ+  +               PSEGS+T   GN F WLHYTWIDIGTP+VSFLVAL
Sbjct:    65 SDFRRQRMNL-------GAKVQSLVPSEGSKTISSGNDFGWLHYTWIDIGTPSVSFLVAL 117

Query:   128 DAGSNLLWVPCQCIQCAPLSASYYTSL-DRNLXXXXXXXXXXXXXXXXXHPXXXXXXXXX 186
             D GSNLLW+PC C+QCAPL+++YY+SL  ++L                 H          
Sbjct:   118 DTGSNLLWIPCNCVQCAPLTSTYYSSLATKDLNEYNPSSSSTSKVFLCSHKLCDSASDCE 177

Query:   187 XXXDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHA---PQSSVQSSVIIGCGRKQTGS 243
                + CPY  +Y + +TSSSG LV+DILHL   + +      SSV++ V+IGCG+KQ+G 
Sbjct:   178 SPKEQCPYTVNYLSGNTSSSGLLVEDILHLTYNTNNRLMNGSSSVKARVVIGCGKKQSGD 237

Query:   244 YLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSGSVFFGDQGPATQQSTS 303
             YLDG APDG+MGLG  ++SVPS L+KAGL++NSFS+CFDE DSG ++FGD GP+ QQST 
Sbjct:   238 YLDGVAPDGLMGLGPAEISVPSFLSKAGLMRNSFSLCFDEEDSGRIYFGDMGPSIQQSTP 297

Query:   304 FLPI-GEKYDAYFVGVESYCIGNSCLTQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLV 362
             FL +   KY  Y VGVE+ CIGNSCL Q+ F   +DSG SFT+LP EIY +V ++ D+ +
Sbjct:   298 FLQLDNNKYSGYIVGVEACCIGNSCLKQTSFTTFIDSGQSFTYLPEEIYRKVALEIDRHI 357

Query:   363 SSKRISLQGNSWKYCYNA 380
             ++   + +G SW+YCY +
Sbjct:   358 NATSKNFEGVSWEYCYES 375
GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0031225 "anchored to membrane" evidence=TAS
GO:0046658 "anchored to plasma membrane" evidence=IDA
TAIR|locus:2125324 AT4G35880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827921 AT2G17760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080903 AT3G51330 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080913 AT3G51350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080908 AT3G51340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080973 AT3G51360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2075512 AT3G02740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2198753 AT1G05840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2183617 AT5G36260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LX20ASPL1_ARATH3, ., 4, ., 2, 3, ., -0.52870.94540.6893yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.230.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
cd05471283 cd05471, pepsin_like, Pepsin-like aspartic proteas 2e-26
cd05476265 cd05476, pepsin_A_like_plant, Chroloplast Nucleoid 4e-23
cd05475273 cd05475, nucellin_like, Nucellins, plant aspartic 7e-21
PLN03146431 PLN03146, PLN03146, aspartyl protease family prote 1e-19
cd06096326 cd06096, Plasmepsin_5, Plasmepsins are a class of 4e-19
pfam00026316 pfam00026, Asp, Eukaryotic aspartyl protease 2e-14
cd05472299 cd05472, cnd41_like, Chloroplast Nucleoids DNA-bin 3e-13
cd05489362 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibit 4e-09
cd05470109 cd05470, pepsin_retropepsin_like, Cellular and ret 7e-07
cd05488320 cd05488, Proteinase_A_fungi, Fungal Proteinase A , 2e-06
cd05474295 cd05474, SAP_like, SAPs, pepsin-like proteinases s 2e-06
cd06098317 cd06098, phytepsin, Phytepsin, a plant homolog of 2e-06
cd05477318 cd05477, gastricsin, Gastricsins, asparate proteas 4e-06
cd05490325 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family 5e-06
cd05478317 cd05478, pepsin_A, Pepsin A, aspartic protease pro 1e-05
cd06097278 cd06097, Aspergillopepsin_like, Aspergillopepsin_l 4e-05
cd05485329 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsi 7e-05
cd05487326 cd05487, renin_like, Renin stimulates production o 1e-04
PTZ00165482 PTZ00165, PTZ00165, aspartyl protease; Provisional 3e-04
>gnl|CDD|133138 cd05471, pepsin_like, Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information 
 Score =  106 bits (267), Expect = 2e-26
 Identities = 65/283 (22%), Positives = 96/283 (33%), Gaps = 59/283 (20%)

Query: 114 IDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVS 173
           I IGTP   F V  D GS+LLWVP                          S+ +S     
Sbjct: 5   ITIGTPPQKFSVIFDTGSSLLWVPS-------------------------SNCTSCSCQK 39

Query: 174 CSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVI 233
                  S  S       C +   Y   D S +G L  D + +   +          +  
Sbjct: 40  HPRFKYDSSKSSTYKDTGCTFSITYG--DGSVTGGLGTDTVTIGGLTI--------PNQT 89

Query: 234 IGCGRKQTGSYLDGAAPDGVMGLGLGD------VSVPSLLAKAGLI-QNSFSICF----D 282
            GC   ++G +      DG++GLG          S    L   GLI    FS       D
Sbjct: 90  FGCATSESGDFSSSGF-DGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGD 148

Query: 283 ENDSGSVFFGDQGPATQQS----TSFLPIGEKYDAYFVGVESYCIGNSCLTQ--SGFQAL 336
             + G + FG   P+        T  +  G  Y  + V ++   +G   +     G  A+
Sbjct: 149 GGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGY--WQVPLDGISVGGKSVISSSGGGGAI 206

Query: 337 VDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYN 379
           VDSG S  +LP+ +Y  ++    K + +   S  G     C  
Sbjct: 207 VDSGTSLIYLPSSVYDAIL----KALGAAVSSSDGGYGVDCSP 245

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions. The active site is located at the groove formed by the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors in the active site. Specificity is determined by nearest-neighbor hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap.The enzymes are mostly secreted from cells as inactive proenzymes that activate autocatalytically at acidic pH. This family of aspartate proteases is classified by MEROPS as the peptidase family A1 (pepsin A, clan AA). Length = 283
>gnl|CDD|133143 cd05476, pepsin_A_like_plant, Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>gnl|CDD|133142 cd05475, nucellin_like, Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>gnl|CDD|178691 PLN03146, PLN03146, aspartyl protease family protein; Provisional Back     alignment and domain information
>gnl|CDD|133160 cd06096, Plasmepsin_5, Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>gnl|CDD|215663 pfam00026, Asp, Eukaryotic aspartyl protease Back     alignment and domain information
>gnl|CDD|133139 cd05472, cnd41_like, Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>gnl|CDD|133156 cd05489, xylanase_inhibitor_I_like, TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>gnl|CDD|133137 cd05470, pepsin_retropepsin_like, Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>gnl|CDD|133155 cd05488, Proteinase_A_fungi, Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>gnl|CDD|133141 cd05474, SAP_like, SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>gnl|CDD|133162 cd06098, phytepsin, Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>gnl|CDD|133144 cd05477, gastricsin, Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>gnl|CDD|133157 cd05490, Cathepsin_D2, Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133145 cd05478, pepsin_A, Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>gnl|CDD|133161 cd06097, Aspergillopepsin_like, Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>gnl|CDD|133152 cd05485, Cathepsin_D_like, Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>gnl|CDD|133154 cd05487, renin_like, Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>gnl|CDD|240300 PTZ00165, PTZ00165, aspartyl protease; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 385
PLN03146431 aspartyl protease family protein; Provisional 100.0
KOG1339398 consensus Aspartyl protease [Posttranslational mod 100.0
PTZ00165 482 aspartyl protease; Provisional 100.0
cd06096326 Plasmepsin_5 Plasmepsins are a class of aspartic p 100.0
cd05478317 pepsin_A Pepsin A, aspartic protease produced in g 100.0
cd05490325 Cathepsin_D2 Cathepsin_D2, pepsin family of protei 100.0
cd05477318 gastricsin Gastricsins, asparate proteases produce 100.0
cd05488320 Proteinase_A_fungi Fungal Proteinase A , aspartic 100.0
cd05485329 Cathepsin_D_like Cathepsin_D_like, pepsin family o 100.0
cd06098317 phytepsin Phytepsin, a plant homolog of mammalian 100.0
cd05486316 Cathespin_E Cathepsin E, non-lysosomal aspartic pr 100.0
cd05489362 xylanase_inhibitor_I_like TAXI-I inhibits degradat 100.0
cd06097278 Aspergillopepsin_like Aspergillopepsin_like, aspar 100.0
cd05472299 cnd41_like Chloroplast Nucleoids DNA-binding Prote 100.0
cd05487326 renin_like Renin stimulates production of angioten 100.0
PTZ00147453 plasmepsin-1; Provisional 100.0
cd05473364 beta_secretase_like Beta-secretase, aspartic-acid 100.0
PTZ00013450 plasmepsin 4 (PM4); Provisional 100.0
cd05475273 nucellin_like Nucellins, plant aspartic proteases 100.0
cd05471283 pepsin_like Pepsin-like aspartic proteases, biloba 100.0
cd05476265 pepsin_A_like_plant Chroloplast Nucleoids DNA-bind 100.0
PF00026317 Asp: Eukaryotic aspartyl protease The Prosite entr 100.0
cd05474295 SAP_like SAPs, pepsin-like proteinases secreted fr 100.0
PF14543164 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 100.0
cd05470109 pepsin_retropepsin_like Cellular and retroviral pe 99.9
PF14541161 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 99.15
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 97.63
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 94.98
PF1365090 Asp_protease_2: Aspartyl protease 93.87
cd05479124 RP_DDI RP_DDI; retropepsin-like domain of DNA dama 93.32
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 90.25
PF1365090 Asp_protease_2: Aspartyl protease 87.5
TIGR02281121 clan_AA_DTGA clan AA aspartic protease, TIGR02281 86.59
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 84.45
cd0548491 retropepsin_like_LTR_2 Retropepsins_like_LTR, peps 83.88
cd0548396 retropepsin_like_bacteria Bacterial aspartate prot 80.38
PF1397572 gag-asp_proteas: gag-polyprotein putative aspartyl 80.23
>PLN03146 aspartyl protease family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.7e-53  Score=429.00  Aligned_cols=332  Identities=25%  Similarity=0.460  Sum_probs=246.6

Q ss_pred             HHHHHHHHH-HHhhcccccccceEEEEeecChhhHhhhhccCCCCccCCCCCCCCcHHHHHHHhhchhhhhhhhhhhhcC
Q 016634            4 LVAICMLFG-CILLDGSDAVSFSSKLVHRFSDEAKERWISKSGNVSVADSWPKKNSVEYLELLLSNDWKRQKTRVKLQSN   82 (385)
Q Consensus         4 ~~~~~~~~~-~~~~~~~~~~~~~~~l~hr~s~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~   82 (385)
                      |++++|+.. .+....+...+++++|+||+++++|         +++    +.....+.++++++++.+|.+......  
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~l~h~~~~~sp---------~~~----~~~~~~~~~~~~~~~~~~r~~~~~~~~--   68 (431)
T PLN03146          4 LLALCLFSFSELSAAEAPKGGFTVDLIHRDSPKSP---------FYN----PSETPSQRLRNAFRRSISRVNHFRPTD--   68 (431)
T ss_pred             hHHHHHHHHhhhhhccccCCceEEEEEeCCCCCCC---------CCC----CCCChhHHHHHHHHHHHHHHHHHhhcc--
Confidence            344444433 2333556778999999999999865         322    222345666666666665554432210  


Q ss_pred             CCCCCccccccCCCCceeEeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCC
Q 016634           83 NNSSRNQLLFPSEGSQTHFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEY  161 (385)
Q Consensus        83 ~~~~~~~~~~~~~g~~~~~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f  161 (385)
                         ....   +..    .++ ...+..|+++|.||||||++.|++||||+++||+|. |..|..+.          .+.|
T Consensus        69 ---~~~~---~~~----~~~-~~~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~----------~~~f  127 (431)
T PLN03146         69 ---ASPN---DPQ----SDL-ISNGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV----------SPLF  127 (431)
T ss_pred             ---ccCC---ccc----cCc-ccCCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCcccccCC----------CCcc
Confidence               0000   000    011 122457999999999999999999999999999998 88887654          4789


Q ss_pred             CCCCCCCCccccCCCcCCCCCC---CCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEE
Q 016634          162 DPSSSSSSKNVSCSHPLCKSRS---SCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGR  238 (385)
Q Consensus       162 ~ps~SsT~~~v~C~~~~C~~~~---~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~  238 (385)
                      ||++|+||+.++|+++.|+...   .|... +.|.|.+.|+|| +.+.|.+++|+|+|++..+..   ...+++.|||++
T Consensus       128 dps~SST~~~~~C~s~~C~~~~~~~~c~~~-~~c~y~i~Ygdg-s~~~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~  202 (431)
T PLN03146        128 DPKKSSTYKDVSCDSSQCQALGNQASCSDE-NTCTYSYSYGDG-SFTKGNLAVETLTIGSTSGRP---VSFPGIVFGCGH  202 (431)
T ss_pred             cCCCCCCCcccCCCCcccccCCCCCCCCCC-CCCeeEEEeCCC-CceeeEEEEEEEEeccCCCCc---ceeCCEEEeCCC
Confidence            9999999999999999998642   37543 469999999996 678999999999998753211   246899999999


Q ss_pred             eccCCCCCCCCCCeeeecCCCCCChHHHHHHcCCCCCceEEeecC-----CCcceEEEcccCCCC---ceeeeeeecCCC
Q 016634          239 KQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE-----NDSGSVFFGDQGPAT---QQSTSFLPIGEK  310 (385)
Q Consensus       239 ~~~g~~~~~~~~dGIlGLg~~~~S~~~~l~~~g~i~~~FS~cl~~-----~~~G~l~fG~~d~~~---~~~tp~v~~~~~  310 (385)
                      .+.|.|..  ..+||||||++.+|+++||...  +.++|||||.+     ...|.|+||+.....   ..+||+++... 
T Consensus       203 ~~~g~f~~--~~~GilGLG~~~~Sl~sql~~~--~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-  277 (431)
T PLN03146        203 NNGGTFDE--KGSGIVGLGGGPLSLISQLGSS--IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-  277 (431)
T ss_pred             CCCCCccC--CCceeEecCCCCccHHHHhhHh--hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-
Confidence            88776532  4699999999999999999753  56699999964     236999999853221   34678775433 


Q ss_pred             CccEEEeEeEEEEcCeEeecCC--------ceEEEcCcccccccCHHHHHHHHHHHHHhhccccccccccccccccccc
Q 016634          311 YDAYFVGVESYCIGNSCLTQSG--------FQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNAR  381 (385)
Q Consensus       311 ~~~y~v~l~~isVg~~~~~~~~--------~~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~s  381 (385)
                      +.+|+|+|++|+||++.+....        ..+||||||++|+||+++|++|.++|.++++..+.......+++||+..
T Consensus       278 ~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~  356 (431)
T PLN03146        278 DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSST  356 (431)
T ss_pred             CCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCC
Confidence            3799999999999999875321        3699999999999999999999999999998765544444578999853

>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00165 aspartyl protease; Provisional Back     alignment and domain information
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite Back     alignment and domain information
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals Back     alignment and domain information
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases Back     alignment and domain information
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa Back     alignment and domain information
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily Back     alignment and domain information
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases Back     alignment and domain information
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins Back     alignment and domain information
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease Back     alignment and domain information
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall Back     alignment and domain information
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin Back     alignment and domain information
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase Back     alignment and domain information
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure Back     alignment and domain information
>PTZ00147 plasmepsin-1; Provisional Back     alignment and domain information
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease Back     alignment and domain information
>PTZ00013 plasmepsin 4 (PM4); Provisional Back     alignment and domain information
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation Back     alignment and domain information
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH Back     alignment and domain information
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants Back     alignment and domain information
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077 Back     alignment and domain information
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins Back     alignment and domain information
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A Back     alignment and domain information
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases Back     alignment and domain information
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>PF13650 Asp_protease_2: Aspartyl protease Back     alignment and domain information
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases Back     alignment and domain information
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family Back     alignment and domain information
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 2e-49
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 1e-43
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 1e-40
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 1e-18
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 9e-18
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 1e-17
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 3e-16
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 3e-16
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 1e-15
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 2e-15
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 3e-15
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 5e-15
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 7e-15
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 8e-15
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 8e-15
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 9e-15
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 1e-14
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 1e-14
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 1e-14
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 2e-14
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 3e-14
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 3e-14
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 4e-14
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 5e-14
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 6e-14
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 9e-14
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 1e-13
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 2e-13
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 2e-12
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 2e-11
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 5e-11
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 1e-10
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-06
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 2e-05
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Length = 403 Back     alignment and structure
 Score =  170 bits (432), Expect = 2e-49
 Identities = 52/299 (17%), Positives = 91/299 (30%), Gaps = 38/299 (12%)

Query: 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSS 167
           LH+  +   TP +   V +D   N LWV C+         A +             +  S
Sbjct: 22  LHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFC----------HSTQCS 71

Query: 168 SSKNVSCSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSS 227
            +    C      SR  C    + C  ++       +  G L +D+L + +      Q  
Sbjct: 72  RANTHQCLSCPAASRPGCHK--NTCGLMSTNPITQQTGLGELGEDVLAIHATQGSTQQLG 129

Query: 228 VQSSV---IIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICF--D 282
              +V   +  C               GV GLG   +S+P+ LA    +Q  F+ C    
Sbjct: 130 PLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGHAPISLPNQLASHFGLQRQFTTCLSRY 189

Query: 283 ENDSGSVFFGDQGPATQQSTSFL---------PIGEKYDAYFVGVESYCIGNSCL----- 328
               G++ FGD     +Q  +                   Y V V S  I    +     
Sbjct: 190 PTSKGAIIFGDAPNNMRQFQNQDIFHDLAFTPLTITLQGEYNVRVNSIRINQHSVFPLNK 249

Query: 329 ------TQSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNAR 381
                   +    ++ +      L   +Y      F + +  +        +  C+N+ 
Sbjct: 250 ISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGLCFNSN 308
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Length = 381 Back     alignment and structure
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Length = 413 Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Length = 342 Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Length = 342 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Length = 334 Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Length = 329 Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Length = 370 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Length = 455 Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Length = 324 Back     alignment and structure
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Length = 239 Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Length = 329 Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Length = 395 Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Length = 383 Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Length = 323 Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} PDB: 3tne_A* Length = 339 Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Length = 330 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Length = 329 Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Length = 329 Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Length = 453 Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Length = 451 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Length = 383 Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Length = 325 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Length = 375 Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Length = 478 Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Length = 323 Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Length = 351 Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Length = 341 Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Length = 361 Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Length = 323 Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Length = 340 Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Length = 325 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Length = 97 Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Length = 241 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
3vla_A413 EDGP; extracellular, inhibitor, plant protein; HET 100.0
1b5f_A239 Protein (cardosin A); hydrolase, aspartic proteina 100.0
2x0b_A383 Renin; hydrolase-hormone complex, hydrolase hormon 100.0
3psg_A370 Pepsinogen; hydrolase(acid proteinase zymogen); 1. 100.0
2apr_A325 Rhizopuspepsin; hydrolase (aspartic proteinase); 1 100.0
3aup_A403 SBG7S, BG, basic 7S globulin; pepsin-like fold, pl 100.0
1tzs_A351 Cathepsin E; hydrolase, aspartic protease, activat 100.0
1am5_A324 Pepsin, acid proteinase; aspartyl protease, hydrol 100.0
1j71_A334 Candidapepsin, aspartic proteinase; candida tropic 100.0
1dpj_A329 Proteinase A; proteinase A, hydrolase-hydrolase in 100.0
2bju_A453 Plasmepsin II; aspartic proteinase, drug design, m 100.0
3cms_A323 Chymosin B; hydrolase, acid proteinase; 2.00A {Bos 100.0
1htr_B329 Gastricsin; aspartyl protease; 1.62A {Homo sapiens 100.0
1mpp_A361 Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu 100.0
2qzx_A342 Candidapepsin-5; aspartic proteinase, aspartyl pro 100.0
3k1w_A341 Renin; protease, alternative splicing, aspartyl pr 100.0
3c9x_A329 Trichoderma reesei aspartic protease; aspartic pro 100.0
4aa9_A320 Chymosin; hydrolase, aspartic peptidase, rennet; H 100.0
1oew_A329 Endothiapepsin; hydrolase, aspartic proteinase mec 100.0
1qdm_A 478 Prophytepsin; aspartic proteinases, saposin-like d 100.0
1miq_A375 Plasmepsin; aspartic proteinase zymogen, domain op 100.0
3pvk_A342 Candidapepsin-2; hydrolase; 1.27A {Candida albican 100.0
2ewy_A 383 Beta-secretase 2; BACE2, aspartic protease, hydrol 100.0
3fv3_A339 SAPP1P-secreted aspartic protease 1; secreted aspa 100.0
2qp8_A 395 Beta-secretase 1; BACE1, protease, alternative spl 100.0
1t6e_X381 Xylanase inhibitor; two beta-barrel domain structu 100.0
3vf3_A 402 Beta-secretase 1; structure-based drug design, hyd 100.0
1yg9_A330 Aspartic protease BLA G 2; allegren, hydrolase, al 100.0
3qvc_A451 Histo-aspartic protease; HAP, plasmepsin, zymogen, 100.0
1ibq_A325 Aspergillopepsin; aspartic proteinase, hydrolase; 100.0
3lpj_A 455 Beta-secretase 1; alzheimer'S, aspartyl protease, 100.0
1izd_A323 Aspartic proteinase; sugar binding, acid protease, 100.0
1bxo_A323 Protein (penicillopepsin); hydrolase, phosphonate 100.0
1wkr_A340 Polyporopepsin; hydrolase, hydrolase-hydrolase inh 100.0
1lya_A97 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.89
1lya_B241 Cathepsin D; lysosomal aspartic protease; HET: NAG 99.87
1fmb_A104 EIAV protease; hydrolase (acid proteinase), RNA-di 81.4
2hs1_A99 HIV-1 protease; ultra-high resolution active site 80.75
>3vla_A EDGP; extracellular, inhibitor, plant protein; HET: NAG; 0.95A {Daucus carota} PDB: 3vlb_A Back     alignment and structure
Probab=100.00  E-value=3.5e-45  Score=366.09  Aligned_cols=253  Identities=23%  Similarity=0.369  Sum_probs=198.1

Q ss_pred             cccccEEEEEEEecCCCeEEEEEEEcCCCceeeecCCCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCcCCCCC-
Q 016634          104 NQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQCIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHPLCKSR-  182 (385)
Q Consensus       104 ~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~~C~~~-  182 (385)
                      +..+.+||++|.||||||+|.|++||||+++||+|.  .|                    .+|+||+.++|.++.|... 
T Consensus        16 d~~~~~Y~~~i~iGTPpq~~~v~~DTGS~~lWv~c~--~c--------------------~~Sst~~~v~C~s~~C~~~~   73 (413)
T 3vla_A           16 DASTLQYVTTINQRTPLVSENLVVDLGGRFLWVDCD--QN--------------------YVSSTYRPVRCRTSQCSLSG   73 (413)
T ss_dssp             CTTTCCEEEEEEETTTTEEEEEEEETTCSSEEEECS--SS--------------------CCCTTCEECBTTSHHHHHTT
T ss_pred             cCCCCeEEEEEEcCCCCcceEEEEeCCChhhhcccC--CC--------------------CCCCCcCccCCCcccccccc
Confidence            344678999999999999999999999999999993  33                    2699999999999999753 


Q ss_pred             -CCC---CC------CCCCCceEEecC-CCCceEEEEEEEEEEEeccCCCCCCC-cccccceEEEEEEeccCCCCCCCCC
Q 016634          183 -SSC---KS------LKDPCPYIADYS-TEDTSSSGYLVDDILHLASFSKHAPQ-SSVQSSVIIGCGRKQTGSYLDGAAP  250 (385)
Q Consensus       183 -~~C---~~------~~~~c~~~~~Y~-~g~s~~~G~l~~Dtl~l~~~~~~~~~-~~~~~~~~fGc~~~~~g~~~~~~~~  250 (385)
                       ..|   .+      .++.|.|.+.|+ ++ +++.|++++|+|+|+..++...+ ....+++.|||++.+.+... ..+.
T Consensus        74 ~~~~~~c~s~~~~~c~~~~c~~~i~Y~~d~-~~~~G~l~~Dtv~l~~~~g~~~~~~~~v~~~~FGc~~~~~~~g~-~~~~  151 (413)
T 3vla_A           74 SIACGDCFNGPRPGCNNNTCGVFPENPVIN-TATGGEVAEDVVSVESTDGSSSGRVVTVPRFIFSCAPTSLLQNL-ASGV  151 (413)
T ss_dssp             CCEEECCSSCCBTTBCSSEEEECCEETTTT-EECCEEEEEEEEEEEEECSSBEEEEEEEEEEEEEEECGGGGTTS-CTTC
T ss_pred             cCCCcccccCCCCCCCCCcCcceeecCcCC-ceeeeEEEEEEEEecccCCCCcccceeeCCEEEECcccccccCc-cccc
Confidence             223   21      134699999994 64 68899999999999864332100 12457899999998742211 2367


Q ss_pred             CeeeecCCCCCChHHHHHHcCCCCCceEEeecC--CCcceEEEcccCCCC----------ceeeeeeecCCC--------
Q 016634          251 DGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDE--NDSGSVFFGDQGPAT----------QQSTSFLPIGEK--------  310 (385)
Q Consensus       251 dGIlGLg~~~~S~~~~l~~~g~i~~~FS~cl~~--~~~G~l~fG~~d~~~----------~~~tp~v~~~~~--------  310 (385)
                      |||||||++.+|+++||+++++++++|||||.+  +.+|.|+||+.+..+          ..+||++.....        
T Consensus       152 dGIlGLg~~~lSl~sql~~~~~i~~~FS~cL~~~~~~~G~l~fGg~~~~~~p~~~~~g~~l~~tPl~~~~~~~~~~~~~~  231 (413)
T 3vla_A          152 VGMAGLGRTRIALPSQFASAFSFKRKFAMCLSGSTSSNSVIIFGNDPYTFLPNIIVSDKTLTYTPLLTNPVSTSATSTQG  231 (413)
T ss_dssp             CEEEECSSSSSSHHHHHHHHHTCCSEEEEECCSCSSSCEEEEEESCCEEETTTEEECTTTSEEEECBCCSSCCSSSCCTT
T ss_pred             ccccccCCCCcchHHHHhhhcCCCceEEEeCCCCCCCceEEEECCCcccccccccccCCceeEeecccCCcccccccccc
Confidence            999999999999999999998889999999987  357999999987531          345666543221        


Q ss_pred             --CccEEEeEeEEEEcCeEeecC----------CceEEEcCcccccccCHHHHHHHHHHHHHhhcc---ccccccccccc
Q 016634          311 --YDAYFVGVESYCIGNSCLTQS----------GFQALVDSGASFTFLPTEIYAEVVVKFDKLVSS---KRISLQGNSWK  375 (385)
Q Consensus       311 --~~~y~v~l~~isVg~~~~~~~----------~~~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~---~~~~~~~~~~~  375 (385)
                        +.+|+|+|++|+||++.+...          ..++||||||++|+||+++|++|.++|.+++.+   ++.. ...+++
T Consensus       232 ~~~~~y~V~l~~IsVgg~~l~~~~~~~~~~~~g~~~aIiDSGTslt~lp~~~y~~l~~a~~~~~~~~~~~~~~-~~~~~~  310 (413)
T 3vla_A          232 EPSVEYFIGVKSIKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRVA-SVAPFG  310 (413)
T ss_dssp             CCCCSCEECCCEEEETTEEECCCGGGTSBCTTSCBCEEECSSSSSEEEEHHHHHHHHHHHHHHHHHTTCCEEC-CCTTCS
T ss_pred             CCCceEEEEEEEEEECCEEccCCchhcccccCCCCCEEEECCCCcEEcCHHHHHHHHHHHHHHhcccCCCcCC-CCCCCc
Confidence              269999999999999988632          368999999999999999999999999998863   2222 234689


Q ss_pred             cccccc
Q 016634          376 YCYNAR  381 (385)
Q Consensus       376 ~Cy~~s  381 (385)
                      .||+.+
T Consensus       311 ~C~~~~  316 (413)
T 3vla_A          311 ACFSTD  316 (413)
T ss_dssp             CEEECT
T ss_pred             ceeccC
Confidence            999876
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2 Back     alignment and structure
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens} Back     alignment and structure
>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A Back     alignment and structure
>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A Back     alignment and structure
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max} Back     alignment and structure
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens} Back     alignment and structure
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2 Back     alignment and structure
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2 Back     alignment and structure
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A* Back     alignment and structure
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ... Back     alignment and structure
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A Back     alignment and structure
>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A Back     alignment and structure
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A* Back     alignment and structure
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans} Back     alignment and structure
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ... Back     alignment and structure
>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A* Back     alignment and structure
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A Back     alignment and structure
>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ... Back     alignment and structure
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2 Back     alignment and structure
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A* Back     alignment and structure
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A* Back     alignment and structure
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens} Back     alignment and structure
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A* Back     alignment and structure
>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ... Back     alignment and structure
>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A Back     alignment and structure
>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ... Back     alignment and structure
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A* Back     alignment and structure
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A* Back     alignment and structure
>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2 Back     alignment and structure
>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A* Back     alignment and structure
>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A* Back     alignment and structure
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A Back     alignment and structure
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2 Back     alignment and structure
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A* Back     alignment and structure
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B* Back     alignment and structure
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A* Back     alignment and structure
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 385
d1t6ex_381 b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Tr 3e-27
g1lya.1338 b.50.1.2 (A:,B:) Cathepsin D {Human (Homo sapiens) 3e-20
d3cmsa_323 b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos 2e-18
d1eaga_342 b.50.1.2 (A:) Acid protease {Yeast (Candida albica 2e-18
d1dpja_329 b.50.1.2 (A:) Acid protease {Baker's yeast (Saccha 3e-18
g1htr.1372 b.50.1.2 (P:,B:) Pepsin(ogen) {Human (Homo sapiens 6e-18
d1j71a_334 b.50.1.2 (A:) Acid protease {Yeast (Candida tropic 2e-17
d2qp8a1 387 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Hum 3e-17
d1oewa_330 b.50.1.2 (A:) Endothiapepsin {Chestnut blight fung 1e-16
d2apra_325 b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus 1e-16
d1am5a_324 b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus mo 1e-16
g1b5f.1326 b.50.1.2 (A:,B:) Plant acid proteinase, phytepsin 2e-16
d1miqa_373 b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading e 8e-16
d1mppa_357 b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840] 2e-15
d3psga_370 b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxI 3e-15
d1smra_335 b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mu 3e-15
d1izea_323 b.50.1.2 (A:) Acid protease {Fungus (Aspergillus o 2e-14
d1qdma2337 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase 2e-14
d2bjua1329 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrad 5e-13
d1bxoa_323 b.50.1.2 (A:) Acid protease {Fungus (Penicillium j 3e-12
d1hrna_337 b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Ho 6e-12
d1wkra_340 b.50.1.2 (A:) Acid protease {Irpex lacteus (Polypo 7e-09
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Length = 381 Back     information, alignment and structure

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

 Score =  108 bits (271), Expect = 3e-27
 Identities = 46/269 (17%), Positives = 88/269 (32%), Gaps = 31/269 (11%)

Query: 109 LHYTWIDIGTPNVSFLVALDAGSNLLWVPC-QCIQCAPLSASYYTSLDRNLSEYDPSSSS 167
           L+      G       + LD    L+W  C      A +            S      ++
Sbjct: 15  LYTIPFHDGAS-----LVLDVAGPLVWSTCDGGQPPAEIP----------CSSPTCLLAN 59

Query: 168 SSKNVSCSHPLCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSS 227
           +     C  P C S         PC            ++G L        +     P S 
Sbjct: 60  AYPAPGCPAPSCGSDKH----DKPCTAYPYNPVSGACAAGSLSHTRFVANTTDGSKPVSK 115

Query: 228 VQSSVIIGCGRKQTGSYLDGAAPDGVMGLGLGDVSVPSLLAKAGLIQNSFSICFDENDSG 287
           V   V+  C   +  + L   +  GV GL    +++P+ +A A  + N F +C      G
Sbjct: 116 VNVGVLAACAPSKLLASLPRGS-TGVAGLANSGLALPAQVASAQKVANRFLLCLPTGGPG 174

Query: 288 SVFFGDQGPATQQSTSFLP-----IGEKYDAYFVGVESYCIGNSCL-----TQSGFQALV 337
              FG       Q T  +P           A+++   S  +G++ +       +    ++
Sbjct: 175 VAIFGGGPVPWPQFTQSMPYTPLVTKGGSPAHYISARSIVVGDTRVPVPEGALATGGVML 234

Query: 338 DSGASFTFLPTEIYAEVVVKFDKLVSSKR 366
            +   +  L  ++Y  ++  F K ++++ 
Sbjct: 235 STRLPYVLLRPDVYRPLMDAFTKALAAQH 263
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Length = 323 Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Length = 342 Back     information, alignment and structure
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Length = 329 Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Length = 334 Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Length = 387 Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Length = 325 Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Length = 324 Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Length = 373 Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Length = 357 Back     information, alignment and structure
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Length = 370 Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Length = 335 Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Length = 323 Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 337 Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Length = 329 Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Length = 323 Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Length = 337 Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
d3psga_370 Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} 100.0
g1htr.1372 Pepsin(ogen) {Human (Homo sapiens), progastricsin 100.0
d1dpja_329 Acid protease {Baker's yeast (Saccharomyces cerevi 100.0
d2apra_325 Acid protease {Bread mold (Rhizopus chinensis) [Ta 100.0
d1oewa_330 Endothiapepsin {Chestnut blight fungus (Endothia p 100.0
d1am5a_324 Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 100.0
d1j71a_334 Acid protease {Yeast (Candida tropicalis) [TaxId: 100.0
d1smra_335 Chymosin (synonym: renin) {Mouse (Mus musculus) [T 100.0
d1eaga_342 Acid protease {Yeast (Candida albicans) [TaxId: 54 100.0
d1mppa_357 Pepsin {Mucor pusillus [TaxId: 4840]} 100.0
d1miqa_373 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
d2qp8a1 387 beta-secretase (memapsin) {Human (Homo sapiens) [T 100.0
g1lya.1338 Cathepsin D {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1hrna_337 Chymosin (synonym: renin) {Human (Homo sapiens) [T 100.0
d1qdma2337 Plant acid proteinase, phytepsin {Barley (Hordeum 100.0
d3cmsa_323 Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId 100.0
d1izea_323 Acid protease {Fungus (Aspergillus oryzae) [TaxId: 100.0
d1t6ex_381 Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu 100.0
d2bjua1329 Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo 100.0
g1b5f.1326 Plant acid proteinase, phytepsin {Cynara carduncul 100.0
d1bxoa_323 Acid protease {Fungus (Penicillium janthinellum), 100.0
d1wkra_340 Acid protease {Irpex lacteus (Polyporus tulipifera 99.98
>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.2e-40  Score=323.11  Aligned_cols=239  Identities=26%  Similarity=0.402  Sum_probs=198.3

Q ss_pred             eeEeccccccEEEEEEEecCCCeEEEEEEEcCCCceeeecC-CCCCCCCCcccccccCCCCCCCCCCCCCCCccccCCCc
Q 016634           99 THFFGNQFYWLHYTWIDIGTPNVSFLVALDAGSNLLWVPCQ-CIQCAPLSASYYTSLDRNLSEYDPSSSSSSKNVSCSHP  177 (385)
Q Consensus        99 ~~~~~~~~~~~y~~~i~iGTP~q~~~v~~DTGS~~~Wv~c~-c~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~v~C~~~  177 (385)
                      ..++.|+.+.+||++|.||||||+|.|++||||+++||+|. |..|..+.          ++.|||++|+|++..     
T Consensus        47 ~~~l~n~~d~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~----------~~~yd~~~Sst~~~~-----  111 (370)
T d3psga_          47 DEPLENYLDTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSD----------HNQFNPDDSSTFEAT-----  111 (370)
T ss_dssp             CCTTGGGTTCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTT----------SCCBCGGGCTTCEEE-----
T ss_pred             ccccccccCCEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCccccc----------ccccCCCcccccccC-----
Confidence            46788889999999999999999999999999999999997 87775333          588999999999985     


Q ss_pred             CCCCCCCCCCCCCCCceEEecCCCCceEEEEEEEEEEEeccCCCCCCCcccccceEEEEEEeccCCCCCCCCCCeeeecC
Q 016634          178 LCKSRSSCKSLKDPCPYIADYSTEDTSSSGYLVDDILHLASFSKHAPQSSVQSSVIIGCGRKQTGSYLDGAAPDGVMGLG  257 (385)
Q Consensus       178 ~C~~~~~C~~~~~~c~~~~~Y~~g~s~~~G~l~~Dtl~l~~~~~~~~~~~~~~~~~fGc~~~~~g~~~~~~~~dGIlGLg  257 (385)
                                   .|.|.+.|++|  ++.|.++.|++.+++.        ...++.|||+....+.+......+||+|||
T Consensus       112 -------------~~~~~~~Yg~G--s~~G~~~~d~~~~~~~--------~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~  168 (370)
T d3psga_         112 -------------SQELSITYGTG--SMTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFLYYAPFDGILGLA  168 (370)
T ss_dssp             -------------EEEEEEESSSC--EEEEEEEEEEEEETTE--------EEEEEEEEEECSCCCGGGGGCSCSEEEECS
T ss_pred             -------------CCcEEEEeCCc--eEEEEEEEEEEeeece--------eeeeeEEEEEeeccCceecccccccccccc
Confidence                         48999999997  7899999999999886        568999999998887766666789999999


Q ss_pred             CCCCC------hHHHHHHcCCC-CCceEEeecCC--CcceEEEcccCCCC-ceeeeeeecCCCCccEEEeEeEEEEcCeE
Q 016634          258 LGDVS------VPSLLAKAGLI-QNSFSICFDEN--DSGSVFFGDQGPAT-QQSTSFLPIGEKYDAYFVGVESYCIGNSC  327 (385)
Q Consensus       258 ~~~~S------~~~~l~~~g~i-~~~FS~cl~~~--~~G~l~fG~~d~~~-~~~tp~v~~~~~~~~y~v~l~~isVg~~~  327 (385)
                      ++..+      +..+|.+++++ .++||+|+.++  .+|.|+||++|+.+ .+.+.|+|+... .+|.|.++++.|+++.
T Consensus       169 ~~~~~~~~~~~~~~~l~~~~~i~~~~fs~~l~~~~~~~g~l~~Gg~d~~~~~~~l~~~p~~~~-~~w~v~~~~i~v~g~~  247 (370)
T d3psga_         169 YPSISASGATPVFDNLWDQGLVSQDLFSVYLSSNDDSGSVVLLGGIDSSYYTGSLNWVPVSVE-GYWQITLDSITMDGET  247 (370)
T ss_dssp             CGGGCGGGCCCHHHHHHHTTCSSSSEEEEEEC-----CEEEEETCCCGGGBSSCCEEEECSEE-TTEEEEECEEESSSSE
T ss_pred             cCcccccCCCchhhhhhhhcccccceeEEEeecCCCCCceEecCCcCchhcccceeEEeeccc-ceEEEEEeeEEeCCeE
Confidence            97654      46678999999 79999999864  56899999999987 568888888765 8999999999999988


Q ss_pred             ee-cCCceEEEcCcccccccCHHHHHHHHHHHHHhhccccccccccccccccccc
Q 016634          328 LT-QSGFQALVDSGASFTFLPTEIYAEVVVKFDKLVSSKRISLQGNSWKYCYNAR  381 (385)
Q Consensus       328 ~~-~~~~~~iiDSGTs~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~Cy~~s  381 (385)
                      +. .....+||||||++++||+++|++|.++|...    .... ......|++..
T Consensus       248 ~~~~~~~~aiiDSGTs~~~lp~~~~~~i~~~l~~~----~~~~-~~~~~~C~~~~  297 (370)
T d3psga_         248 IACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGAS----ENSD-GEMVISCSSID  297 (370)
T ss_dssp             EECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCE----ECTT-CCEECCGGGGG
T ss_pred             EecCCCccEEEecCCceEeCCHHHHHHHHHHhCCe----eecC-CcEEEeccccC
Confidence            75 35568999999999999999999887766433    2222 22345687643
>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]} Back     information, alignment and structure
>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]} Back     information, alignment and structure
>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]} Back     information, alignment and structure
>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]} Back     information, alignment and structure
>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]} Back     information, alignment and structure
>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]} Back     information, alignment and structure
>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]} Back     information, alignment and structure
>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]} Back     information, alignment and structure
>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]} Back     information, alignment and structure
>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]} Back     information, alignment and structure
>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]} Back     information, alignment and structure