Citrus Sinensis ID: 016636

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-----
MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVGKHSPLHCHVILKQDFDIST
ccccccccccccccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHEEEEEcEEEcccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccccc
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccEEEEEHHHHHHHHHHHEEEEHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHccccccccc
mgtqgpattdqnynhaTSEEQAAKQKAiddwlpitssrnaKWWYSAFHNVTAMVGAGVLSLPYAmaqlgwgpGVAILILSWIITLYTLWQMVEMhemvpgkrfdryhELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCkepckeikLSYFIMIFASVHFVLshlpnfnaiAGVSLAAAVMSLSYSTIAWSasvrkgvqpdvaygykaktaagTVFNFFSALGDVAFAYAGHNVVLEIQatipstpekpskgpmwrGVVVAYIVVALCYFPVALIGYWMFGNKVEDNIllslekptwlIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKklnfsptrlLRFVVRnlyvgkhsplhcHVILKQDFDIST
mgtqgpattdqnynhATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIpstpekpskgpMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYvgkhsplhchvilkqdfdist
MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVGKHSPLHCHVILKQDFDIST
***************************IDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATI**********PMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVGKHSPLHCHVILKQDF****
****************************************KWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQAT**********GPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVGKHSPLHCHVILKQDFDIST
*************************KAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVGKHSPLHCHVILKQDFDIST
****************************DDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVGKHSPLHCHVILKQDFDI**
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooo
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYVGKHSPLHCHVILKQDFDIST
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query385 2.2.26 [Sep-21-2011]
Q9FKS8446 Lysine histidine transpor yes no 0.911 0.786 0.849 1e-179
Q9LRB5441 Lysine histidine transpor no no 0.919 0.802 0.780 1e-166
Q9C733453 Lysine histidine transpor no no 0.927 0.788 0.763 1e-160
Q9SR44441 Lysine histidine transpor no no 0.903 0.789 0.776 1e-158
O22719451 Lysine histidine transpor no no 0.929 0.793 0.654 1e-142
Q9SS86455 Lysine histidine transpor no no 0.906 0.767 0.662 1e-137
Q9C6M2440 Lysine histidine transpor no no 0.893 0.781 0.602 1e-123
Q9C9J0448 Lysine histidine transpor no no 0.927 0.796 0.584 1e-115
Q9SX98519 Lysine histidine transpor no no 0.846 0.628 0.395 2e-67
Q84WE9478 Lysine histidine transpor no no 0.919 0.740 0.305 3e-50
>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  626 bits (1615), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 300/353 (84%), Positives = 325/353 (92%), Gaps = 2/353 (0%)

Query: 14  NHATSEE-QAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGP 72
           +H   E+  AA+QK I+DWLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAM+QLGWGP
Sbjct: 9   DHQDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGP 68

Query: 73  GVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEV 132
           G+A+L+LSW+ITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+
Sbjct: 69  GIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query: 133 GVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192
           GVCIVYMVTGGKSL K HEL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLA
Sbjct: 129 GVCIVYMVTGGKSLKKFHELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLA 187

Query: 193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE 252
           AAVMSLSYSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLE
Sbjct: 188 AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLE 247

Query: 253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTW 312
           IQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP W
Sbjct: 248 IQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAW 307

Query: 313 LIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYV 365
           LI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YV
Sbjct: 308 LIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYV 360
Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1 Back     alignment and function description
>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2 Back     alignment and function description
>sp|Q9SR44|LHTL2_ARATH Lysine histidine transporter-like 2 OS=Arabidopsis thaliana GN=At1g67640 PE=2 SV=1 Back     alignment and function description
>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2 Back     alignment and function description
>sp|Q9SS86|LHTL4_ARATH Lysine histidine transporter-like 4 OS=Arabidopsis thaliana GN=At3g01760 PE=3 SV=2 Back     alignment and function description
>sp|Q9C6M2|LHTL6_ARATH Lysine histidine transporter-like 6 OS=Arabidopsis thaliana GN=At1g25530 PE=2 SV=1 Back     alignment and function description
>sp|Q9C9J0|LHTL5_ARATH Lysine histidine transporter-like 5 OS=Arabidopsis thaliana GN=At1g71680 PE=2 SV=2 Back     alignment and function description
>sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8 OS=Arabidopsis thaliana GN=AATL1 PE=1 SV=1 Back     alignment and function description
>sp|Q84WE9|LHTL7_ARATH Lysine histidine transporter-like 7 OS=Arabidopsis thaliana GN=At4g35180 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
356558769450 PREDICTED: lysine histidine transporter 0.948 0.811 0.836 0.0
255537003440 amino acid transporter, putative [Ricinu 0.911 0.797 0.863 1e-180
297805586445 hypothetical protein ARALYDRAFT_916150 [ 0.911 0.788 0.855 1e-178
356574036450 PREDICTED: lysine histidine transporter 0.945 0.808 0.813 1e-178
30693666445 Lysine histidine transporter 1 [Arabidop 0.911 0.788 0.849 1e-177
30693663446 Lysine histidine transporter 1 [Arabidop 0.911 0.786 0.849 1e-177
225452181442 PREDICTED: lysine histidine transporter 0.927 0.807 0.827 1e-176
224055679433 lysine/histidine transporter [Populus tr 0.888 0.789 0.871 1e-175
449441618 2819 PREDICTED: uncharacterized protein LOC10 0.909 0.124 0.831 1e-174
357454949 487 Lysine/histidine transporter [Medicago t 0.950 0.751 0.753 1e-174
>gi|356558769|ref|XP_003547675.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/366 (83%), Positives = 334/366 (91%), Gaps = 1/366 (0%)

Query: 1   MGTQGPATTDQNYNHATSEEQAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLS 60
           MGTQ     D NY    +EE+  +QKAI+DWLPITSSRNAKWWYSAFHNVTAMVGAGVLS
Sbjct: 1   MGTQSQTPIDNNYLKNATEEELQRQKAINDWLPITSSRNAKWWYSAFHNVTAMVGAGVLS 60

Query: 61  LPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGL 120
           LPYAM++LGWGPGV +LILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQ+AFGEKLGL
Sbjct: 61  LPYAMSELGWGPGVTVLILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQYAFGEKLGL 120

Query: 121 YIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL 180
           YIVVPQQL+VE+GV IVYMVTGGKSL K H+ +C + CK+IKL++FIMIFASVHFVLSHL
Sbjct: 121 YIVVPQQLVVEIGVNIVYMVTGGKSLQKFHDTVC-DSCKKIKLTFFIMIFASVHFVLSHL 179

Query: 181 PNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDV 240
           PNFN+I+GVSLAAAVMSLSYSTIAW+AS  KGVQ +V YGYKAK+ +GTVFNFFSALGDV
Sbjct: 180 PNFNSISGVSLAAAVMSLSYSTIAWAASAHKGVQENVEYGYKAKSTSGTVFNFFSALGDV 239

Query: 241 AFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVE 300
           AFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGN VE
Sbjct: 240 AFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNTVE 299

Query: 301 DNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVV 360
           DNIL+SLEKP WLI MAN FVV+HVIGSYQIYAMPVFDMIET++VKKLNF P+  LRF+V
Sbjct: 300 DNILISLEKPKWLIAMANMFVVIHVIGSYQIYAMPVFDMIETVMVKKLNFKPSMTLRFIV 359

Query: 361 RNLYVG 366
           RNLYV 
Sbjct: 360 RNLYVA 365

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255537003|ref|XP_002509568.1| amino acid transporter, putative [Ricinus communis] gi|223549467|gb|EEF50955.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297805586|ref|XP_002870677.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] gi|297316513|gb|EFH46936.1| hypothetical protein ARALYDRAFT_916150 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356574036|ref|XP_003555159.1| PREDICTED: lysine histidine transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|30693666|ref|NP_198894.2| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|332007211|gb|AED94594.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30693663|ref|NP_851109.1| Lysine histidine transporter 1 [Arabidopsis thaliana] gi|75262627|sp|Q9FKS8.1|LHT1_ARATH RecName: Full=Lysine histidine transporter 1 gi|14194151|gb|AAK56270.1|AF367281_1 AT5g40780/K1B16_3 [Arabidopsis thaliana] gi|10177957|dbj|BAB11340.1| amino acid permease [Arabidopsis thaliana] gi|22137070|gb|AAM91380.1| At5g40780/K1B16_3 [Arabidopsis thaliana] gi|332007210|gb|AED94593.1| Lysine histidine transporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225452181|ref|XP_002265308.1| PREDICTED: lysine histidine transporter 1 [Vitis vinifera] gi|296090261|emb|CBI40080.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224055679|ref|XP_002298599.1| lysine/histidine transporter [Populus trichocarpa] gi|222845857|gb|EEE83404.1| lysine/histidine transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449441618|ref|XP_004138579.1| PREDICTED: uncharacterized protein LOC101220661 [Cucumis sativus] Back     alignment and taxonomy information
>gi|357454949|ref|XP_003597755.1| Lysine/histidine transporter [Medicago truncatula] gi|355486803|gb|AES68006.1| Lysine/histidine transporter [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query385
TAIR|locus:2154815446 LHT1 "lysine histidine transpo 0.911 0.786 0.849 6.2e-165
UNIPROTKB|Q85V22441 ht "Histidine amino acid trans 0.896 0.782 0.812 2.8e-153
TAIR|locus:2024071441 LHT2 "lysine histidine transpo 0.916 0.800 0.782 7.4e-153
TAIR|locus:2008154453 AT1G48640 [Arabidopsis thalian 0.927 0.788 0.763 5.2e-152
TAIR|locus:2008605441 AT1G67640 "AT1G67640" [Arabido 0.901 0.786 0.778 6.9e-150
TAIR|locus:2008435451 AT1G61270 [Arabidopsis thalian 0.927 0.791 0.656 1.5e-131
TAIR|locus:2031215440 AT1G25530 [Arabidopsis thalian 0.901 0.788 0.600 6.4e-115
TAIR|locus:2013056448 AT1G71680 [Arabidopsis thalian 0.924 0.794 0.590 3.3e-111
TAIR|locus:2015383519 AT1G47670 [Arabidopsis thalian 0.833 0.618 0.398 1.1e-64
TAIR|locus:2132816478 LHT7 "LYS/HIS transporter 7" [ 0.862 0.694 0.320 1.5e-49
TAIR|locus:2154815 LHT1 "lysine histidine transporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1605 (570.0 bits), Expect = 6.2e-165, P = 6.2e-165
 Identities = 300/353 (84%), Positives = 325/353 (92%)

Query:    14 NHATSEE-QAAKQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGP 72
             +H   E+  AA+QK I+DWLPITSSRNAKWWYSAFHNVTAMVGAGVL LPYAM+QLGWGP
Sbjct:     9 DHQDDEKLAAARQKEIEDWLPITSSRNAKWWYSAFHNVTAMVGAGVLGLPYAMSQLGWGP 68

Query:    73 GVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEV 132
             G+A+L+LSW+ITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVE+
Sbjct:    69 GIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEI 128

Query:   133 GVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLA 192
             GVCIVYMVTGGKSL K HEL+C + CK IKL+YFIMIFASVHFVLSHLPNFN+I+GVSLA
Sbjct:   129 GVCIVYMVTGGKSLKKFHELVCDD-CKPIKLTYFIMIFASVHFVLSHLPNFNSISGVSLA 187

Query:   193 AAVMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLE 252
             AAVMSLSYSTIAW++S  KGVQ DV YGYKAKT AGTVFNFFS LGDVAFAYAGHNVVLE
Sbjct:   188 AAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTVFNFFSGLGDVAFAYAGHNVVLE 247

Query:   253 IQATIPSTPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTW 312
             IQATIPSTPEKPSKGPMWRGV+VAYIVVALCYFPVAL+GY++FGN VEDNIL+SL+KP W
Sbjct:   248 IQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGVEDNILMSLKKPAW 307

Query:   313 LIVMANFFVVVHVIGSYQIYAMPVFDMIETLLVKKLNFSPTRLLRFVVRNLYV 365
             LI  AN FVV+HVIGSYQIYAMPVFDM+ETLLVKKLNF PT  LRF VRN YV
Sbjct:   308 LIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNFRPTTTLRFFVRNFYV 360
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006865 "amino acid transport" evidence=ISS;RCA
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP
GO:0016020 "membrane" evidence=ISS
GO:0043090 "amino acid import" evidence=RCA;IMP
GO:0080167 "response to karrikin" evidence=IEP
GO:0006499 "N-terminal protein myristoylation" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015696 "ammonium transport" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)] Back     alignment and assigned GO terms
TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008154 AT1G48640 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008435 AT1G61270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031215 AT1G25530 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013056 AT1G71680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015383 AT1G47670 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2132816 LHT7 "LYS/HIS transporter 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FKS8LHT1_ARATHNo assigned EC number0.84980.91160.7869yesno
Q9LRB5LHT2_ARATHNo assigned EC number0.78020.91940.8027nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query385
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-101
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 3e-14
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 3e-05
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 4e-05
PLN03074473 PLN03074, PLN03074, auxin influx permease; Provisi 8e-05
PRK15132403 PRK15132, PRK15132, tyrosine transporter TyrP; Pro 0.004
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  304 bits (781), Expect = e-101
 Identities = 124/335 (37%), Positives = 185/335 (55%), Gaps = 14/335 (4%)

Query: 38  RNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEM 97
                W + F+ + A++GAGVLSLPYA  QLGW PG+ +L++  +I+LYTL  +V+  + 
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 98  VP---GKRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLC 154
           V    GKR   Y +LG   FG K G  +++   L+   GVCI Y++  G +L  + +   
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPK-GKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFF 119

Query: 155 KEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQ 214
                 I L YFI+IF  +   LS +PN +A++ +SL AAV SL Y  I   +    GV 
Sbjct: 120 DT--CHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSL-YIVILVLSVAELGVL 176

Query: 215 PDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV 274
                G         +   F A+G + FA+ GH V+L IQ T+ S P K     M + ++
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSK--FKAMTKVLL 233

Query: 275 VAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAM 334
            A I+V + Y  V L+GY  FGN V+ NILL+L K  WLI +AN  +V+H++ SY + A 
Sbjct: 234 TAIIIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAF 293

Query: 335 PVFDMIETLLVKK----LNFSPTRLLRFVVRNLYV 365
           P+  ++E LL +K     +   ++LLR V+R+  V
Sbjct: 294 PIRQIVENLLFRKGASGKHNPKSKLLRVVIRSGLV 328

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information
>gnl|CDD|215559 PLN03074, PLN03074, auxin influx permease; Provisional Back     alignment and domain information
>gnl|CDD|185086 PRK15132, PRK15132, tyrosine transporter TyrP; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 385
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 99.98
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.97
PRK09664415 tryptophan permease TnaB; Provisional 99.88
PRK10483414 tryptophan permease; Provisional 99.88
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.86
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.86
PRK15132403 tyrosine transporter TyrP; Provisional 99.82
TIGR00814397 stp serine transporter. The HAAAP family includes 99.69
PRK13629443 threonine/serine transporter TdcC; Provisional 99.68
PRK10655438 potE putrescine transporter; Provisional 99.56
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.55
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.53
TIGR00909429 2A0306 amino acid transporter. 99.5
KOG1287 479 consensus Amino acid transporters [Amino acid tran 99.49
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 99.49
PRK10644 445 arginine:agmatin antiporter; Provisional 99.48
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.48
TIGR00930 953 2a30 K-Cl cotransporter. 99.48
PRK11021410 putative transporter; Provisional 99.47
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.46
PRK10249458 phenylalanine transporter; Provisional 99.46
PRK11387 471 S-methylmethionine transporter; Provisional 99.46
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 99.43
PRK15049 499 L-asparagine permease; Provisional 99.42
PRK10836 489 lysine transporter; Provisional 99.39
PRK10238 456 aromatic amino acid transporter; Provisional 99.37
TIGR00908 442 2A0305 ethanolamine permease. The three genes used 99.37
PRK10746 461 putative transport protein YifK; Provisional 99.36
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.36
PRK10580 457 proY putative proline-specific permease; Provision 99.35
TIGR00911 501 2A0308 L-type amino acid transporter. 99.35
PRK11357 445 frlA putative fructoselysine transporter; Provisio 99.34
TIGR00913 478 2A0310 amino acid permease (yeast). 99.3
PF03845320 Spore_permease: Spore germination protein; InterPr 99.3
COG1113 462 AnsP Gamma-aminobutyrate permease and related perm 99.27
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.27
PRK10197 446 gamma-aminobutyrate transporter; Provisional 99.25
COG0531 466 PotE Amino acid transporters [Amino acid transport 99.19
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.14
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.11
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 99.02
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 98.92
TIGR00907 482 2A0304 amino acid permease (GABA permease). 98.91
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 98.72
KOG3832319 consensus Predicted amino acid transporter [Genera 98.7
PRK15238 496 inner membrane transporter YjeM; Provisional 98.69
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 98.62
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.18
KOG1289 550 consensus Amino acid transporters [Amino acid tran 98.1
PRK11375 484 allantoin permease; Provisional 97.81
COG3949349 Uncharacterized membrane protein [Function unknown 97.68
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.38
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.22
TIGR00813407 sss transporter, SSS family. have different number 97.22
PRK09442 483 panF sodium/panthothenate symporter; Provisional 97.22
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 97.21
COG1953 497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.12
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 97.12
KOG1288 945 consensus Amino acid transporters [Amino acid tran 96.83
COG1457442 CodB Purine-cytosine permease and related proteins 96.7
TIGR00835425 agcS amino acid carrier protein. Members of the AG 96.66
PRK12488 549 acetate permease; Provisional 96.62
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 96.56
PRK11017404 codB cytosine permease; Provisional 96.43
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 96.38
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.35
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 96.29
PRK09395 551 actP acetate permease; Provisional 96.15
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 96.1
PRK15015 701 carbon starvation protein A; Provisional 96.04
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 96.04
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 95.66
PRK15419 502 proline:sodium symporter PutP; Provisional 95.64
PRK10484 523 putative transporter; Provisional 95.45
COG1966 575 CstA Carbon starvation protein, predicted membrane 95.19
COG0733439 Na+-dependent transporters of the SNF family [Gene 94.48
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 94.24
PF01566358 Nramp: Natural resistance-associated macrophage pr 94.21
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 92.89
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 92.57
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 91.87
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 91.09
COG4147 529 DhlC Predicted symporter [General function predict 90.03
PRK15433439 branched-chain amino acid transport system 2 carri 89.83
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 89.8
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 89.0
PHA02764399 hypothetical protein; Provisional 88.13
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 85.52
KOG2466 572 consensus Uridine permease/thiamine transporter/al 85.32
KOG3660 629 consensus Sodium-neurotransmitter symporter [Signa 81.27
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-46  Score=358.57  Aligned_cols=342  Identities=45%  Similarity=0.811  Sum_probs=294.3

Q ss_pred             hcccccccccccccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhc---CC
Q 016636           24 KQKAIDDWLPITSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMV---PG  100 (385)
Q Consensus        24 ~~~~~~~~~~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~---~~  100 (385)
                      +..++++|++..++|+.|++++.++.++.++|.|+|++|||+++.||+.|+++++..++++.||..+|.+|.+.+   ++
T Consensus        22 ~~~~~~~~~~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~  101 (437)
T KOG1303|consen   22 RKSDVDDWDPITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPG  101 (437)
T ss_pred             cccccccCCccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence            566777788888889999999999999999999999999999999999999999999999999999999987643   44


Q ss_pred             cccccHHHHHHHhcCccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCC
Q 016636          101 KRFDRYHELGQHAFGEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHL  180 (385)
Q Consensus       101 ~~~~~y~~i~~~~~G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~  180 (385)
                      +++++|.|+++++||++. ++++.+++.+.++++|+.|.+..+|++..+.+......+ ..+.+.|++++.++.+|++++
T Consensus       102 ~r~~~Y~dl~~~afG~~~-~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-~l~~~~f~iif~~i~~~~s~l  179 (437)
T KOG1303|consen  102 KRRYRYPDLGQAAFGPKG-RLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-SLDKQYFIIIFGLIVLPLSQL  179 (437)
T ss_pred             ccCCChHHHHHHHhCCCc-eEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cccceehhhhHHHHHHHHHHC
Confidence            456789999999999865 899999999999999999999999999999999864432 344678999999999999999


Q ss_pred             CCchhhHHHHHHHHHHHHHHHhheeeeeeeecCCC-CcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCC
Q 016636          181 PNFNAIAGVSLAAAVMSLSYSTIAWSASVRKGVQP-DVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPS  259 (385)
Q Consensus       181 ~~l~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~  259 (385)
                      ++++.+++.|..+.++++.+..+.+..+..++... .+..++...... ...  ++++|++.|+|.+|.++|+|+++|  
T Consensus       180 p~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~-~~~--f~a~g~iaFaf~gH~v~peIq~tM--  254 (437)
T KOG1303|consen  180 PNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTI-PTV--FTALGIIAFAYGGHAVLPEIQHTM--  254 (437)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCC-cch--hhhhhheeeeecCCeeeeehHhhc--
Confidence            99999999999999999888877777777766443 222232221111 111  899999999999999999999999  


Q ss_pred             CCCCCCCCCCchhhhHHHHHHHHHHHhHHhHhhhccCCcchhhHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHH
Q 016636          260 TPEKPSKGPMWRGVVVAYIVVALCYFPVALIGYWMFGNKVEDNILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDM  339 (385)
Q Consensus       260 ~~~~p~~~~~~~~~~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~  339 (385)
                        |+|++  ++|++..+..+++.+|+..++.||++|||++++|++.|+.++.|....+++++.+|++.++.++..|+.+.
T Consensus       255 --k~p~~--f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~  330 (437)
T KOG1303|consen  255 --KSPPK--FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDV  330 (437)
T ss_pred             --CCchh--hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHH
Confidence              77887  77999999999999999999999999999999999999976689999999999999999999999999999


Q ss_pred             HHHHHhhhcC-CC-Ccchhhhheehhhh------hhchhHHHHHH
Q 016636          340 IETLLVKKLN-FS-PTRLLRFVVRNLYV------GKHSPLHCHVI  376 (385)
Q Consensus       340 l~~~~~~~~~-~~-~~~~~r~~~r~~~v------~~~~p~~~~~~  376 (385)
                      +|++...+++ .+ +...+|.+.|+.++      +..+|+++.+.
T Consensus       331 ~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~  375 (437)
T KOG1303|consen  331 VEKLIGVKHPDFKKRSLVLRLLVRTFFVAVTTFVALSFPFFGDLL  375 (437)
T ss_pred             HHHHhccCCccccccccceeeehhhHHHHHHHHHHHhccccHhHH
Confidence            9999986665 22 34567888887654      66778877765

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.62
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.48
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.2
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.17
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 96.29
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 95.66
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 94.46
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.62  E-value=4.3e-15  Score=144.75  Aligned_cols=295  Identities=15%  Similarity=0.092  Sum_probs=186.7

Q ss_pred             cccCCCchhHHHHHHHHhhhhhhhhhHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636           35 TSSRNAKWWYSAFHNVTAMVGAGVLSLPYAMAQLGWGPGVAILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF  114 (385)
Q Consensus        35 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~af~~~G~~~gii~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~  114 (385)
                      +++|+.|.++.+...+++++|+|++.+|....+.|. .+++.+++.+++.......+.|...+.|...  +..+..++.+
T Consensus         5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~p~~G--g~y~~~~~~~   81 (445)
T 3l1l_A            5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLDPSPG--GSYAYARRCF   81 (445)
T ss_dssp             --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTT--THHHHHHHHS
T ss_pred             CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccCCCCC--CchhhHHhHc
Confidence            457899999999999999999999999998888886 4788889999999999999999887777755  7888999999


Q ss_pred             CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHhhcCCCccccchhhhHHHHHHHHHhhCCCCchhhHHHHHHHH
Q 016636          115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELLCKEPCKEIKLSYFIMIFASVHFVLSHLPNFNAIAGVSLAAA  194 (385)
Q Consensus       115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~  194 (385)
                      ||.+| ++..+..++.......++....++++....+...    ..+....+.+++. +++-....+..+...+++.+..
T Consensus        82 G~~~g-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~in~~g~~~~~~~~~~~~  155 (445)
T 3l1l_A           82 GPFLG-YQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK----DPWVLTITCVVVL-WIFVLLNIVGPKMITRVQAVAT  155 (445)
T ss_dssp             CHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG----SHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc----ccHHHHHHHHHHH-HHHHHHHHhchHHHHHHHHHHH
Confidence            99888 7777777776666666666666666554433211    0111111111111 1222222235555666555544


Q ss_pred             HHHHHHHhheeeeeeeecCCCCcccccccccccchhhhHHHHHhhHHhhccCceeehhccccCCCCCCCCCCCCCchhhh
Q 016636          195 VMSLSYSTIAWSASVRKGVQPDVAYGYKAKTAAGTVFNFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVV  274 (385)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fsf~~~~~~~~i~~~m~~~~~~p~~~~~~~~~~  274 (385)
                      ...++..+++++..+.....+.....+. +....++.++..++...+|+|.|++......+|+    |||+| +.+|++.
T Consensus       156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~----k~p~r-~ip~a~~  229 (445)
T 3l1l_A          156 VLALIPIVGIAVFGWFWFRGETYMAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVV----KNPKR-NVPIATI  229 (445)
T ss_dssp             HHHHHHHHHHHHTTSTTCCCCCCCCC------------HHHHHHHHHHTTTTTTHHHHGGGGB----SSHHH-HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhChhhcccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHh----cCccc-cccHHHH
Confidence            4333322222222221111111111111 1111246678899999999999999999999999    77865 6889999


Q ss_pred             HHHHHHHHHHHhHHhHhhhccCCcch----h---hHhhcCCCchHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHh
Q 016636          275 VAYIVVALCYFPVALIGYWMFGNKVE----D---NILLSLEKPTWLIVMANFFVVVHVIGSYQIYAMPVFDMIETLLV  345 (385)
Q Consensus       275 ~s~~~~~~~Y~~~g~~gy~~fG~~~~----~---~il~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~p~~~~l~~~~~  345 (385)
                      .+..+..++|++..+......+.+..    +   .+..... +++...+..+...+..+.+.--..+...+.+..+-.
T Consensus       230 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~  306 (445)
T 3l1l_A          230 GGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMAL-GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD  306 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHH-CTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998877776654321    1   1122211 133445556666666666666666666666666543
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query385
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 95.42
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.42  E-value=0.81  Score=42.24  Aligned_cols=110  Identities=18%  Similarity=0.179  Sum_probs=62.3

Q ss_pred             CchhHHHHHHHHhhhhhhhh-hHHHHHHhhCchHHHH----HHHHHHHHHHHHHHHHHHcchhcCCcccccHHHHHHHhc
Q 016636           40 AKWWYSAFHNVTAMVGAGVL-SLPYAMAQLGWGPGVA----ILILSWIITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF  114 (385)
Q Consensus        40 ~s~~~~~~~l~~~~iG~GiL-~lP~af~~~G~~~gii----~l~~~~~l~~~s~~~l~~~~~~~~~~~~~~y~~i~~~~~  114 (385)
                      .|..+-++..++..+|.|=+ -.||...+-|-..-++    +++++++-..+.=..+.|..+ ...  ...+..+.....
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~-~g~--i~~~~~i~~~~~   81 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGG-AQG--HGTTPAIFYLLW   81 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHH-TTT--CCSHHHHHHHHS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCc--ccHHHHHHHHhc
Confidence            46688899999999999865 7999866555322222    222333322233333333322 111  336777777766


Q ss_pred             CccccccchhHHHHHHhhhhhhhhhhhhccchHHHHHHh
Q 016636          115 GEKLGLYIVVPQQLIVEVGVCIVYMVTGGKSLHKVHELL  153 (385)
Q Consensus       115 G~~~~~~~~~~~~~~~~~g~~~~y~i~~~~~l~~l~~~~  153 (385)
                      +.|.. ..+.....+..+..++-|.+..+-.+.-+...+
T Consensus        82 ~~~~~-~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~  119 (509)
T d2a65a1          82 RNRFA-KILGVFGLWIPLVVAIYYVYIESWTLGFAIKFL  119 (509)
T ss_dssp             CSHHH-HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcch-hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            54433 244555556666666777777666555444443